Citrus Sinensis ID: 039464

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVDSNEDEASSDASDDVLPPLEKNMNHMNLLESDGEESE
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccccccccHHHHHHccEEEEEcccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccEEEEcccccEEEcHHHHHHHHHcccEEEEccHHHHHcccHHHccccccccccEEEEEccccccccccccHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mqelrvssgfggivlspvgthcvskedyslikrkglavvdcswarlgdvpfvklrcsaprllpwlvaanpvnygrpcELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWlsqqsrvpkvpsdvegvdsnedeassdasddvlppleknmnhmnllesdgeese
Flexible Loop (DISEMBL)
mqelrvssgfggivlspvgtHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQSRVPKVPSDVEgvdsnedeassdasddvlppleknmnhmnllesdgeese
Low Complexity Region (SEG)
MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVdsnedeassdasddVLPPLEKNMNHMNLLESDGEESE
Disordered region (IsUnstruct)
********GFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWL*****************************************************
Disordered Region (DISOPRED)
*******SGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDW******************************************************
Disordered Region (DISEMBL)
********GFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWL****************************DDVLPPLEKNMNHMNLL********
Disordered Region (DISPRO)
MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQSRV***********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVDSNEDEASSDASDDVLPPLEKNMNHMNLLESDGEESE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q5HZH2	323	Ribosome biogenesis prote	yes	no	0.817	0.486	0.528	4e-42
Q9UJK0	312	Ribosome biogenesis prote	yes	no	0.906	0.557	0.450	1e-37
Q12094	313	Ribosome biogenesis prote	yes	no	0.734	0.450	0.468	7e-32
Q10409	288	Ribosome biogenesis prote	yes	no	0.916	0.611	0.366	7e-32
Q2NET3	171	Probable ribosome biogene	yes	no	0.677	0.760	0.492	3e-29
A5UJF3	171	Probable ribosome biogene	yes	no	0.687	0.771	0.446	1e-28
Q8TXM4	169	Probable ribosome biogene	yes	no	0.661	0.751	0.480	5e-28
O26654	169	Probable ribosome biogene	no	no	0.671	0.763	0.441	5e-28
Q12ZL9	173	Probable ribosome biogene	yes	no	0.656	0.728	0.415	3e-24
Q9HNJ6	176	Probable ribosome biogene	yes	no	0.640	0.698	0.441	5e-23

>sp|Q5HZH2|TSR3_MOUSE Ribosome biogenesis protein TSR3 homolog OS=Mus musculus GN=Tsr3 PE=2 SV=1

 Score =  170 bits (431), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 105/157 (66%)

Query: 4   LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
           LR+S  FGG+VLSPVGT  VS  D  L+ + G+AV+DCSWA+L D PF K+R S  RLLP
Sbjct: 87  LRLSQRFGGLVLSPVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRGSHLRLLP 146

Query: 64  WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
           +LVAANPVNYGRPC+LSCVEA +AA  I G  + A +LL KFKWG  FL LNRELL  Y+
Sbjct: 147 YLVAANPVNYGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNRELLDKYA 206

Query: 124 KCENSADIISVQNDWLSQQSRVPKVPSDVEGVDSNED 160
            C    +++  +  +L+     P+   D   VDS  +
Sbjct: 207 ACRGPEEVLQAEQGYLASTRDTPEEDIDPFDVDSGRE 243

Probable pre-rRNA processing protein involved in ribosome biogenesis.
Mus musculus (taxid: 10090)

>sp|Q9UJK0|TSR3_HUMAN Ribosome biogenesis protein TSR3 homolog OS=Homo sapiens GN=TSR3 PE=1 SV=1

 Score =  155 bits (392), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 112/191 (58%), Gaps = 17/191 (8%)

Query: 4   LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
           LR+   FGG+VLSPVG    S  D  L+ + G+AV+DCSWARL + PF K+R S  RLLP
Sbjct: 87  LRLGHRFGGLVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLP 146

Query: 64  WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
           +LVAANPVNYGRP  LSCVEA +A   I G  + A +LL KFKWG  FL LNR+LL  Y+
Sbjct: 147 YLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNRQLLDKYA 206

Query: 124 KCENSADIISVQNDWLSQQSRVPK--------VPSDVEGVDSNEDEAS---------SDA 166
            C +  +++  + ++L+     P+        V S  E  + N   AS         SDA
Sbjct: 207 ACGSPEEVLQAEQEFLANAKESPQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDA 266

Query: 167 SDDVLPPLEKN 177
           S+D  P  E+ 
Sbjct: 267 SEDPGPGAERG 277

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q12094|TSR3_YEAST Ribosome biogenesis protein TSR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR3 PE=1 SV=1

 Score =  136 bits (343), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 91/141 (64%)

Query: 1   MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
           ++ LRV   F GIV+SP G   V  +D  ++++ G +VV+CSWARL +VPF K+     R
Sbjct: 72  IKSLRVGQKFQGIVVSPNGKGVVCPDDLEIVEQHGASVVECSWARLEEVPFNKIGGKHER 131

Query: 61  LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
           LLP+LVAAN VNYGRP  L+CVEAL+A   I G  + A+ LL  F WG  FL LN+ELL+
Sbjct: 132 LLPYLVAANQVNYGRPWRLNCVEALAACFAIVGRMDWASELLSHFSWGMGFLELNKELLE 191

Query: 121 AYSKCENSADIISVQNDWLSQ 141
            Y +C +   +   + +WL +
Sbjct: 192 IYQQCTDCDSVKRAEEEWLQK 212

Ribosome biogenesis protein required for processing 35S pre-rRNA at site D.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q10409|TSR3_SCHPO Ribosome biogenesis protein tsr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr3 PE=3 SV=1

 Score =  136 bits (343), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 15/191 (7%)

Query: 1   MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
           ++ LR+   F G+V++P G   VS  D       G +VV+CSWAR+ ++PF ++     R
Sbjct: 53  VRNLRIGQKFRGVVITPNGKVPVSPADKEYFDNGGASVVECSWARIEEIPFSRIGGRCER 112

Query: 61  LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
           LLP+LVA+NPVNYGRP  L+C EAL+A + I G    A LL+  FKWGH+F  +N ELL 
Sbjct: 113 LLPYLVASNPVNYGRPWRLNCAEALAACMYIVGYPNEARLLMDNFKWGHSFFEVNEELLD 172

Query: 121 AYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVDSNEDEASSDASDDVLPPLEKNMNH 180
            Y++C ++ DI   +  +L             E ++++  E  +  +DD+      N+NH
Sbjct: 173 IYAQCHDAQDIQEKEKKYL-------------EEMEASYQEQRNQTTDDIWSA--GNLNH 217

Query: 181 MNLLESDGEES 191
              L +    S
Sbjct: 218 KPTLNTSSTHS 228

Ribosome biogenesis protein required for processing 35S pre-rRNA at site D.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2NET3|TSR3_METST Probable ribosome biogenesis protein Msp_1293 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=Msp_1293 PE=3 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 84/130 (64%)

Query: 10  FGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAAN 69
           +  IVL       VS+ED   I + GL+ +DCSW +L    F        RLLP+LVAAN
Sbjct: 39  YNAIVLDAEADKAVSREDREKITKYGLSALDCSWKKLKKSSFNFKSKKNHRLLPFLVAAN 98

Query: 70  PVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSA 129
           PVNYG+PC LS  EALSAAL I G ++ A  L+  FKWG  F++LN  LL+AYS+ +NS 
Sbjct: 99  PVNYGKPCILSSAEALSAALYIVGYKDEARDLMNSFKWGPHFITLNENLLEAYSEAKNST 158

Query: 130 DIISVQNDWL 139
           +I+ VQN++L
Sbjct: 159 EIVEVQNEFL 168

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860)

>sp|A5UJF3|TSR3_METS3 Probable ribosome biogenesis protein Msm_0126 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0126 PE=3 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 82/132 (62%)

Query: 11  GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANP 70
           G +VL+P     VS EDY  + R+G+  +DCSW  +             R LP+L+A NP
Sbjct: 39  GAVVLNPFAQKAVSYEDYRYVHRRGVVGLDCSWNEVSSSKKFFSLSKYHRSLPFLIATNP 98

Query: 71  VNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSAD 130
           VNYG+PC LS VEA+SA L I   ++ A  +L  FKWGH FL LN +LL+AYS+ + S D
Sbjct: 99  VNYGKPCILSTVEAVSATLYITRFKDEAKDILDGFKWGHTFLELNHDLLEAYSEADTSKD 158

Query: 131 IISVQNDWLSQQ 142
           ++ VQN++L  +
Sbjct: 159 VVRVQNEFLESK 170

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) (taxid: 420247)

>sp|Q8TXM4|TSR3_METKA Probable ribosome biogenesis protein MK0638 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0638 PE=3 SV=1

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 4/131 (3%)

Query: 11  GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPF--VKLRCSAPRLLPWLVAA 68
           G +VL P     +S+ED      +GL  VDCSW  +    F  ++ RC   R+LP+L+AA
Sbjct: 37  GAVVLDPTVEKALSREDRDAALERGLVAVDCSWEHVHRY-FGPLRRRCRH-RILPYLIAA 94

Query: 69  NPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENS 128
           NPVNYG+PC+LS VEAL+AAL I G    A   + +FKWG AFL LNRE L+AY + E S
Sbjct: 95  NPVNYGKPCKLSTVEALAAALYILGFRREAEEFISRFKWGPAFLELNRERLEAYRRAETS 154

Query: 129 ADIISVQNDWL 139
           A+++ VQ ++L
Sbjct: 155 AEVVRVQEEFL 165

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

>sp|O26654|TSR3_METTH Probable ribosome biogenesis protein MTH_554 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_554 PE=3 SV=2

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 84/129 (65%)

Query: 11  GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANP 70
           G +VL+P     VS ED  ++ R+G+A +DCSW ++     +       R LP+LVAANP
Sbjct: 39  GALVLNPFSEKAVSPEDRDMVLRRGIAALDCSWKKVKKSSVIFQTARNHRSLPFLVAANP 98

Query: 71  VNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSAD 130
            NYG+PC LS  EA++A L I G ++ A+ ++  FKWG  FL LNRELL+AYS+ ENS +
Sbjct: 99  TNYGKPCILSTAEAVAATLYIVGLKDIASDIMSYFKWGPHFLDLNRELLEAYSRAENSLE 158

Query: 131 IISVQNDWL 139
           ++ +Q  ++
Sbjct: 159 VVEIQKKFI 167

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

>sp|Q12ZL9|TSR3_METBU Probable ribosome biogenesis protein Mbur_0088 OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_0088 PE=3 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 82/130 (63%), Gaps = 4/130 (3%)

Query: 11  GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDV-PFVKLRCSAPRLLPWLVAAN 69
           G I+L P+    +S  D      + + V+DCSW  + +V P +       R LP+LVA N
Sbjct: 47  GSILLDPMAKQALSPADKH---EQNITVLDCSWETVEEVFPHLMRLHLQHRALPYLVATN 103

Query: 70  PVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSA 129
           PVN+GRP +L+ VEA +AAL I G ++ A  +L KF WGH FL +N+E L+ YSK ++S 
Sbjct: 104 PVNFGRPFKLTSVEAFAAALYILGNKKQAEKILSKFNWGHVFLDMNKEPLEDYSKAKDSN 163

Query: 130 DIISVQNDWL 139
           +II +Q++++
Sbjct: 164 EIIKIQSEYM 173

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

>sp|Q9HNJ6|TSR3_HALSA Probable ribosome biogenesis protein VNG_2075C OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=VNG_2075C PE=3 SV=2

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 6/129 (4%)

Query: 11  GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANP 70
            G+VL+P     +S  D + +    L  +DCSW   G   F        R LP+LVAANP
Sbjct: 49  AGVVLNPHAERALSPADDTDM----LVALDCSWETAGRAMFEI--DGEHRALPFLVAANP 102

Query: 71  VNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSAD 130
           VNYG+P +L+ VEA + AL I G  E A  LL KF WGH FL LN E L+ Y+ CE+S++
Sbjct: 103 VNYGQPFQLNTVEAFAGALAILGRWERAEELLSKFTWGHTFLELNEEPLRRYADCEDSSE 162

Query: 131 IISVQNDWL 139
           +++VQ  +L
Sbjct: 163 VVAVQQAYL 171

Probable pre-rRNA processing protein involved in ribosome biogenesis.

Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (taxid: 64091)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
224081192	213	predicted protein [Populus trichocarpa]	0.984	0.887	0.809	1e-85
255576192	285	conserved hypothetical protein [Ricinus	0.973	0.656	0.807	1e-83
449462828	265	PREDICTED: ribosome biogenesis protein T	1.0	0.724	0.787	5e-82
449509094	265	PREDICTED: ribosome biogenesis protein T	1.0	0.724	0.787	5e-82
359480842	302	PREDICTED: probable ribosome biogenesis	0.973	0.619	0.821	6e-82
296082467	326	unnamed protein product [Vitis vinifera]	0.979	0.576	0.807	7e-82
357519583	273	Putative metal-binding domain in RNase L	0.989	0.695	0.769	4e-81
356525511	270	PREDICTED: probable ribosome biogenesis	0.994	0.707	0.737	3e-79
255645341	270	unknown [Glycine max]	0.994	0.707	0.737	3e-79
356512726	271	PREDICTED: probable ribosome biogenesis	0.994	0.704	0.726	2e-78

>gi|224081192|ref|XP_002306328.1| predicted protein [Populus trichocarpa] gi|222855777|gb|EEE93324.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 153/189 (80%), Positives = 173/189 (91%)

Query: 1   MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
           ++ELRVSSGFGGIVLSPVG+HCVS+EDY+LIKRKGLAVVDCSWARL DVPFVKLRC++PR
Sbjct: 23  LKELRVSSGFGGIVLSPVGSHCVSREDYNLIKRKGLAVVDCSWARLEDVPFVKLRCASPR 82

Query: 61  LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
           LLPWLVAANPVNYGRPC+LSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK
Sbjct: 83  LLPWLVAANPVNYGRPCQLSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 142

Query: 121 AYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVDSNEDEASSDASDDVLPPLEKNMNH 180
           +YS+C NSA+IISVQN WL+QQ  VPK  SD +G D +E+E SS+ S+D LPPLE+NMNH
Sbjct: 143 SYSECGNSAEIISVQNAWLTQQREVPKAVSDTKGADLSENEGSSNDSEDGLPPLERNMNH 202

Query: 181 MNLLESDGE 189
           +N  ES+ E
Sbjct: 203 LNFQESEDE 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576192|ref|XP_002528990.1| conserved hypothetical protein [Ricinus communis] gi|223531580|gb|EEF33409.1| conserved hypothetical protein [Ricinus communis]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 151/187 (80%), Positives = 169/187 (90%)

Query: 1   MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
           ++ELRV+ GFGGIVLSPVG+ CVSK+D+SLIKRKGLAVVDCSWARL DVPFVKLRC+APR
Sbjct: 74  LKELRVNCGFGGIVLSPVGSQCVSKQDHSLIKRKGLAVVDCSWARLNDVPFVKLRCAAPR 133

Query: 61  LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
           LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETA+LLL KFKWGHAFLSLNRELLK
Sbjct: 134 LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETADLLLNKFKWGHAFLSLNRELLK 193

Query: 121 AYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVDSNEDEASSDASDDVLPPLEKNMNH 180
           AYS+CENSADIISVQN WLSQQS+VPK   D E  ++++DE S   S+D LPPLE+NMNH
Sbjct: 194 AYSECENSADIISVQNGWLSQQSKVPKAVPDSEEAETSKDEGSCSDSEDGLPPLERNMNH 253

Query: 181 MNLLESD 187
           +N  +SD
Sbjct: 254 LNFEDSD 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462828|ref|XP_004149142.1| PREDICTED: ribosome biogenesis protein TSR3 homolog [Cucumis sativus]

 Score =  308 bits (790), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 152/193 (78%), Positives = 171/193 (88%), Gaps = 1/193 (0%)

Query: 1   MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
           ++ELRV+SGFGGIVLSPVG +CVSKED+SL+K+KGLAVVDCSWARLGDVPFVKLRC+APR
Sbjct: 73  LKELRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPR 132

Query: 61  LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
           LLPWLVAANPVNYGRPCELSCVEAL+AALIICGE ETA+LLLGKFKWGHAFLS+NRELLK
Sbjct: 133 LLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLK 192

Query: 121 AYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVDS-NEDEASSDASDDVLPPLEKNMN 179
            YS CENSADIISVQN WLSQQ +VPK P +VE   S +E +  SD S+D LPPLEKN+N
Sbjct: 193 QYSACENSADIISVQNAWLSQQRQVPKEPHNVEDKSSVSEHDEGSDDSEDGLPPLEKNLN 252

Query: 180 HMNLLESDGEESE 192
           H+ L +   EESE
Sbjct: 253 HLTLQQESDEESE 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509094|ref|XP_004163491.1| PREDICTED: ribosome biogenesis protein TSR3 homolog [Cucumis sativus]

 Score =  308 bits (790), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 152/193 (78%), Positives = 171/193 (88%), Gaps = 1/193 (0%)

Query: 1   MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
           ++ELRV+SGFGGIVLSPVG +CVSKED+SL+K+KGLAVVDCSWARLGDVPFVKLRC+APR
Sbjct: 73  LKELRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPR 132

Query: 61  LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
           LLPWLVAANPVNYGRPCELSCVEAL+AALIICGE ETA+LLLGKFKWGHAFLS+NRELLK
Sbjct: 133 LLPWLVAANPVNYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLK 192

Query: 121 AYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVDS-NEDEASSDASDDVLPPLEKNMN 179
            YS CENSADIISVQN WLSQQ +VPK P +VE   S +E +  SD S+D LPPLEKN+N
Sbjct: 193 QYSACENSADIISVQNAWLSQQRQVPKEPHNVEDKSSVSEHDEGSDDSEDGLPPLEKNLN 252

Query: 180 HMNLLESDGEESE 192
           H+ L +   EESE
Sbjct: 253 HLTLQQESDEESE 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480842|ref|XP_002276760.2| PREDICTED: probable ribosome biogenesis protein C16orf42 homolog [Vitis vinifera]

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 156/190 (82%), Positives = 166/190 (87%), Gaps = 3/190 (1%)

Query: 4   LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
           LRV+SGFGGI LSPVG  CVSKEDY LIKRKGLAVVDCSWARL DVPF KLRC+APRLLP
Sbjct: 91  LRVTSGFGGIALSPVGNQCVSKEDYILIKRKGLAVVDCSWARLSDVPFTKLRCAAPRLLP 150

Query: 64  WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
           WLVAANPVNYGRPCELSCVEALSAAL ICGEEETANLLLGKFKWGHAFLSLNRELLKAYS
Sbjct: 151 WLVAANPVNYGRPCELSCVEALSAALFICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 210

Query: 124 KCENSADIISVQNDWLSQQS-RVPK-VPSDVEGVDS-NEDEASSDASDDVLPPLEKNMNH 180
           KCEN A+IISVQN WLSQQ  +V K +P D  GV S N+DE S D S+D LPPLEKN+NH
Sbjct: 211 KCENGAEIISVQNAWLSQQRLQVQKALPDDEAGVSSQNDDEGSCDDSEDGLPPLEKNLNH 270

Query: 181 MNLLESDGEE 190
           +NL ESD E+
Sbjct: 271 LNLEESDSED 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082467|emb|CBI21472.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 155/192 (80%), Positives = 164/192 (85%), Gaps = 4/192 (2%)

Query: 3   ELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLL 62
           ELRV+SGFGGI LSPVG  CVSKEDY LIKRKGLAVVDCSWARL DVPF KLRC+APRLL
Sbjct: 113 ELRVTSGFGGIALSPVGNQCVSKEDYILIKRKGLAVVDCSWARLSDVPFTKLRCAAPRLL 172

Query: 63  PWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAY 122
           PWLVAANPVNYGRPCELSCVEALSAAL ICGEEETANLLLGKFKWGHAFLSLNRELLKAY
Sbjct: 173 PWLVAANPVNYGRPCELSCVEALSAALFICGEEETANLLLGKFKWGHAFLSLNRELLKAY 232

Query: 123 SKCENSADIISVQNDWLSQQS-RVPKVPSDVEGV---DSNEDEASSDASDDVLPPLEKNM 178
           SKCEN A+IISVQN WLSQQ  +V K   D EG      N+DE S D S+D LPPLEKN+
Sbjct: 233 SKCENGAEIISVQNAWLSQQRLQVQKALPDDEGAGVSSQNDDEGSCDDSEDGLPPLEKNL 292

Query: 179 NHMNLLESDGEE 190
           NH+NL ESD E+
Sbjct: 293 NHLNLEESDSED 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519583|ref|XP_003630080.1| Putative metal-binding domain in RNase L inhibitor RLI family protein [Medicago truncatula] gi|355524102|gb|AET04556.1| Putative metal-binding domain in RNase L inhibitor RLI family protein [Medicago truncatula]

 Score =  305 bits (782), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 150/195 (76%), Positives = 171/195 (87%), Gaps = 5/195 (2%)

Query: 1   MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
           ++ELRV++GFGGI LSPVGT CVS+EDYSLI+ KGLAVVDCSWARL DVPFVKLRC+APR
Sbjct: 81  LKELRVTNGFGGIALSPVGTQCVSREDYSLIQNKGLAVVDCSWARLDDVPFVKLRCAAPR 140

Query: 61  LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
           LLPWLVAANP+NYGRPC+LSCVEAL+AAL ICGEEETANLLLGKF WGHAF SLN+ELLK
Sbjct: 141 LLPWLVAANPINYGRPCQLSCVEALAAALTICGEEETANLLLGKFNWGHAFSSLNKELLK 200

Query: 121 AYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGV---DSNEDEASSDASDDVLPPLEKN 177
           AYSKC+NSA+IISVQNDWLSQ  +VPK P+D E V   + + D+ SSD SDD LPPLE+N
Sbjct: 201 AYSKCQNSAEIISVQNDWLSQARQVPKAPTDSEVVKQENEDNDQNSSD-SDDGLPPLERN 259

Query: 178 MNHMNLLESDGEESE 192
           MNH+ +  SD EESE
Sbjct: 260 MNHLTIENSD-EESE 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525511|ref|XP_003531368.1| PREDICTED: probable ribosome biogenesis protein C16orf42 homolog [Glycine max]

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 143/194 (73%), Positives = 170/194 (87%), Gaps = 3/194 (1%)

Query: 1   MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
           ++ELRVS+GFGGIVLSP G  CVS+EDYSLI++KGLAVVDCSWARL DVPFV+LRC+APR
Sbjct: 78  LKELRVSNGFGGIVLSPAGNQCVSREDYSLIQKKGLAVVDCSWARLDDVPFVRLRCTAPR 137

Query: 61  LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
           LLPWLVAANPVNYGRPC+LSCVEALSAAL ICGEE+TANLLL KFKWGHAF+SLN ELL+
Sbjct: 138 LLPWLVAANPVNYGRPCQLSCVEALSAALTICGEEKTANLLLDKFKWGHAFMSLNGELLR 197

Query: 121 AYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVDSNEDEASSDASD--DVLPPLEKNM 178
           AYSKC+NSA+IISVQN WLSQ+S++P+ P+D E      ++   ++SD  D LPPLEKNM
Sbjct: 198 AYSKCQNSAEIISVQNAWLSQESQIPRAPTDSEVTTPESEDKIQNSSDSEDGLPPLEKNM 257

Query: 179 NHMNLLESDGEESE 192
           NH++++ SD EESE
Sbjct: 258 NHLSIVNSD-EESE 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645341|gb|ACU23167.1| unknown [Glycine max]

 Score =  299 bits (766), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 143/194 (73%), Positives = 170/194 (87%), Gaps = 3/194 (1%)

Query: 1   MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
           ++ELRVS+GFGGIVLSP G  CVS+EDYSLI++KGLAVVDCSWARL DVPFV+LRC+APR
Sbjct: 78  LKELRVSNGFGGIVLSPAGNQCVSREDYSLIQKKGLAVVDCSWARLDDVPFVRLRCTAPR 137

Query: 61  LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
           LLPWLVAANPVNYGRPC+LSCVEALSAAL ICGEE+TANLLL KFKWGHAF+SLN ELL+
Sbjct: 138 LLPWLVAANPVNYGRPCQLSCVEALSAALTICGEEKTANLLLDKFKWGHAFMSLNGELLR 197

Query: 121 AYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVDSNEDEASSDASD--DVLPPLEKNM 178
           AYSKC+NSA+IISVQN WLSQ+S++P+ P+D E      ++   ++SD  D LPPLEKNM
Sbjct: 198 AYSKCQNSAEIISVQNAWLSQESQIPRAPTDSEVTTPESEDKIQNSSDSEDGLPPLEKNM 257

Query: 179 NHMNLLESDGEESE 192
           NH++++ SD EESE
Sbjct: 258 NHLSIVNSD-EESE 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512726|ref|XP_003525067.1| PREDICTED: probable ribosome biogenesis protein C16orf42 homolog [Glycine max]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/194 (72%), Positives = 169/194 (87%), Gaps = 3/194 (1%)

Query: 1   MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
           ++ELRVS+GFGG+VLSP G  CVS+EDYSLI++KGLAVVDCSWARL DVPF++LRC+APR
Sbjct: 79  LKELRVSNGFGGVVLSPAGNQCVSREDYSLIQKKGLAVVDCSWARLDDVPFMRLRCAAPR 138

Query: 61  LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
           LLPWLVAANPVNYGRPC+LSCVEALSAAL ICGEE+TANLLL KFKWGHAF+SLN ELL+
Sbjct: 139 LLPWLVAANPVNYGRPCQLSCVEALSAALTICGEEKTANLLLDKFKWGHAFMSLNGELLR 198

Query: 121 AYSKCENSADIISVQNDWLSQQSRVPKVPSDVEGVDSNEDEASSDASD--DVLPPLEKNM 178
           AYSKC+NSA+IISVQN WLSQ+S++P+ P+D E      ++   ++SD  D LPPLEKNM
Sbjct: 199 AYSKCQNSAEIISVQNAWLSQESQIPRAPTDSEVTTPESEDKIQNSSDSEDGLPPLEKNM 258

Query: 179 NHMNLLESDGEESE 192
           NH+++  SD EESE
Sbjct: 259 NHLSIANSD-EESE 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2184128	266	AT5G10070 "AT5G10070" [Arabido	1.0	0.721	0.705	6.7e-72
MGI|MGI:1915577	323	Tsr3 "TSR3 20S rRNA accumulati	0.781	0.464	0.535	6.1e-39
UNIPROTKB|D4A6X9	263	RGD1565744 "Probable ribosome	0.75	0.547	0.534	1.1e-37
UNIPROTKB|A5PK98	315	C25H16ORF42 "Probable ribosome	0.75	0.457	0.527	4.9e-37
UNIPROTKB|F1RFZ6	316	TSR3 "Probable ribosome biogen	0.75	0.455	0.534	4.9e-37
UNIPROTKB|F1PWP9	312	TSR3 "Probable ribosome biogen	0.75	0.461	0.527	1.3e-36
ZFIN|ZDB-GENE-040718-63	297	tsr3 "TSR3, 20S rRNA accumulat	0.781	0.505	0.496	2.7e-36
UNIPROTKB|Q9UJK0	312	TSR3 "Ribosome biogenesis prot	0.75	0.461	0.506	5.1e-35
CGD|CAL0002246	346	orf19.5802 [Candida albicans (	0.734	0.407	0.489	6.7e-33
UNIPROTKB|Q5A0K9	346	TSR3 "Ribosome biogenesis prot	0.734	0.407	0.489	6.7e-33

TAIR|locus:2184128 AT5G10070 "AT5G10070" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 139/197 (70%), Positives = 162/197 (82%)

Query:     1 MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
             ++ELRV++GFGG+VLSPVG  CVS+EDY LIKRKGLAVVDCSWARL DVPF KLRC+APR
Sbjct:    70 LKELRVNTGFGGVVLSPVGRQCVSREDYDLIKRKGLAVVDCSWARLTDVPFAKLRCTAPR 129

Query:    61 LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
             LLPWLVAANPVNYGRPCELSCVEALSAALI+CGE+ETA LLLGKFKWGHAFLSLN+++LK
Sbjct:   130 LLPWLVAANPVNYGRPCELSCVEALSAALILCGEKETAELLLGKFKWGHAFLSLNKDILK 189

Query:   121 AYSKCENSADIISVQNDWLSQQSRVPKVPSDVE---GVXXXXXXXXXXXXXXV--LPPLE 175
              YSKCENSA+IISVQN WL+QQ+++PK P  +E    V                 LPPLE
Sbjct:   190 EYSKCENSAEIISVQNSWLTQQTQIPKQPPALEERKDVKKDGESGDESEEDDEDGLPPLE 249

Query:   176 KNMNHMNLLESDGEESE 192
             +NMNH+ L +S+ E+SE
Sbjct:   250 RNMNHIKLEDSEEEDSE 266

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:1915577 Tsr3 "TSR3 20S rRNA accumulation" [Mus musculus (taxid:10090)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 82/153 (53%), Positives = 104/153 (67%)

Query:     4 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
             LR+S  FGG+VLSPVGT  VS  D  L+ + G+AV+DCSWA+L D PF K+R S  RLLP
Sbjct:    87 LRLSQRFGGLVLSPVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRGSHLRLLP 146

Query:    64 WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
             +LVAANPVNYGRPC+LSCVEA +AA  I G  + A +LL KFKWG  FL LNRELL  Y+
Sbjct:   147 YLVAANPVNYGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNRELLDKYA 206

Query:   124 KCENSADIISVQNDWLSQQSRVPKV---PSDVE 153
              C    +++  +  +L+     P+    P DV+
Sbjct:   207 ACRGPEEVLQAEQGYLASTRDTPEEDIDPFDVD 239

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|D4A6X9 RGD1565744 "Probable ribosome biogenesis protein C16orf42 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 77/144 (53%), Positives = 100/144 (69%)

Query:     4 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
             LR+S  FGG+VLSPVGT  VS  D  L+ + G+AV+DCSWA+L + PF K+R S  RLLP
Sbjct:    26 LRLSQRFGGLVLSPVGTQYVSPADRQLVAQSGIAVIDCSWAKLDETPFGKMRGSHLRLLP 85

Query:    64 WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
             +LVAANPVNYGRPC+LSCVEA +AA  I G  + A +LL KFKWG  FL LNR+LL  Y+
Sbjct:    86 YLVAANPVNYGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNRQLLDKYA 145

Query:   124 KCENSADIISVQNDWLSQQSRVPK 147
              C    +++  +  +L+     P+
Sbjct:   146 ACCGPEEVLEAEQGYLASTKDTPE 169

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|A5PK98 C25H16ORF42 "Probable ribosome biogenesis protein C16orf42 homolog" [Bos taurus (taxid:9913)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 76/144 (52%), Positives = 99/144 (68%)

Query:     4 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
             LR+   FGG+VLSPVG+  VS  D  L+ + G+AV+DCSWARL + PF K+R S  RLLP
Sbjct:    87 LRLGHRFGGLVLSPVGSQYVSPADRHLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLP 146

Query:    64 WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
              LVAANPVNYGRPC LSCVEA +A   I G  + A +LL KFKWG  FL LNR+LL  Y+
Sbjct:   147 HLVAANPVNYGRPCRLSCVEAFAATFCILGFSDLAVILLRKFKWGKGFLDLNRQLLDKYA 206

Query:   124 KCENSADIISVQNDWLSQQSRVPK 147
              C +  +++  + ++L+Q    P+
Sbjct:   207 ACSSPEEVLQAEQEFLAQAKEHPE 230

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1RFZ6 TSR3 "Probable ribosome biogenesis protein C16orf42 homolog" [Sus scrofa (taxid:9823)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 77/144 (53%), Positives = 97/144 (67%)

Query:     4 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
             LR+   FGG+VLSPVG+  VS  D  L+ + G+AV+DCSWARL + PF K+R S  RLLP
Sbjct:    87 LRLGQRFGGLVLSPVGSQYVSPADRQLVAQSGVAVIDCSWARLNETPFGKMRGSHLRLLP 146

Query:    64 WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
              LVAANPVNYGRPC LSCVEA +A   I G  + A LLL KFKWG  FL LNRELL  Y+
Sbjct:   147 HLVAANPVNYGRPCRLSCVEAFAATFCILGFSDLAVLLLRKFKWGKGFLDLNRELLDKYA 206

Query:   124 KCENSADIISVQNDWLSQQSRVPK 147
              C    +++  + ++L+     P+
Sbjct:   207 ACSGPEEVLQAEQEFLALAKEHPE 230

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1PWP9 TSR3 "Probable ribosome biogenesis protein C16orf42 homolog" [Canis lupus familiaris (taxid:9615)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 76/144 (52%), Positives = 99/144 (68%)

Query:     4 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
             LR+   FGG+VLSPVG+  VS  D  L+ + G+AV+DCSWARL + PF K+R S  RLLP
Sbjct:    87 LRLGQRFGGLVLSPVGSQYVSCADRQLVAQCGVAVIDCSWARLNETPFGKMRGSHLRLLP 146

Query:    64 WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
              LVAANPVNYGRPC+LSCVEA +A L I G  + A +LL KFKWG  FL LNR+LL  Y+
Sbjct:   147 HLVAANPVNYGRPCKLSCVEAFAATLCILGFSDLAIILLRKFKWGKGFLDLNRQLLDKYA 206

Query:   124 KCENSADIISVQNDWLSQQSRVPK 147
              C    +++  + ++L+     P+
Sbjct:   207 ACSGPEEVLQAEQEFLAHARERPE 230

GO:0006364 "rRNA processing" evidence=IEA

ZFIN|ZDB-GENE-040718-63 tsr3 "TSR3, 20S rRNA accumulation, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 75/151 (49%), Positives = 106/151 (70%)

Query:     4 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
             LR++  F G++LSP+GT  V+  D  ++   GLAV+DCSWARL D PF K+  S PRLLP
Sbjct:    86 LRLNQRFNGLILSPMGTKYVTPADREIVAHGGLAVIDCSWARLEDTPFSKMIGSHPRLLP 145

Query:    64 WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
             +LVAANPVNYG+PC+LSCVEA +A   I G  + A LLL KFKWG  FL LN+ LL+ Y+
Sbjct:   146 YLVAANPVNYGKPCKLSCVEAYAATFCIVGFRDLAVLLLRKFKWGLGFLELNKTLLERYA 205

Query:   124 KCENSADIISVQNDWLSQQSRVPKV-PSDVE 153
               ++  ++++V+ ++LS   +  ++ P DV+
Sbjct:   206 SSQSEEELLAVEKEFLSATPQEEEIDPFDVD 236

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006364 "rRNA processing" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q9UJK0 TSR3 "Ribosome biogenesis protein TSR3 homolog" [Homo sapiens (taxid:9606)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 73/144 (50%), Positives = 96/144 (66%)

Query:     4 LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
             LR+   FGG+VLSPVG    S  D  L+ + G+AV+DCSWARL + PF K+R S  RLLP
Sbjct:    87 LRLGHRFGGLVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLP 146

Query:    64 WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
             +LVAANPVNYGRP  LSCVEA +A   I G  + A +LL KFKWG  FL LNR+LL  Y+
Sbjct:   147 YLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNRQLLDKYA 206

Query:   124 KCENSADIISVQNDWLSQQSRVPK 147
              C +  +++  + ++L+     P+
Sbjct:   207 ACGSPEEVLQAEQEFLANAKESPQ 230

GO:0006364 "rRNA processing" evidence=IEA

CGD|CAL0002246 orf19.5802 [Candida albicans (taxid:5476)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 69/141 (48%), Positives = 89/141 (63%)

Query:     1 MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
             ++ LRV   F GIV+SP G   V   D  +++  G AVV+CSWARL ++PF K+     R
Sbjct:    77 IKNLRVGQKFQGIVVSPNGKSIVCPNDKEIVETNGAAVVECSWARLDEIPFNKIGGKNER 136

Query:    61 LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
             LLP+LVAANPVNYGRP  L+CVEAL+A   I G  + A LLL  F WG  FL +N EL++
Sbjct:   137 LLPYLVAANPVNYGRPWRLNCVEALAACFAIVGHTDWAELLLSNFSWGLTFLKINEELIE 196

Query:   121 AYSKCENSADIISVQNDWLSQ 141
              Y +C +S  I   Q  WL +
Sbjct:   197 LYQQCTDSESITKAQEQWLEK 217

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030490 "maturation of SSU-rRNA" evidence=IEA

UNIPROTKB|Q5A0K9 TSR3 "Ribosome biogenesis protein TSR3" [Candida albicans SC5314 (taxid:237561)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 69/141 (48%), Positives = 89/141 (63%)

Query:     1 MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPR 60
             ++ LRV   F GIV+SP G   V   D  +++  G AVV+CSWARL ++PF K+     R
Sbjct:    77 IKNLRVGQKFQGIVVSPNGKSIVCPNDKEIVETNGAAVVECSWARLDEIPFNKIGGKNER 136

Query:    61 LLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLK 120
             LLP+LVAANPVNYGRP  L+CVEAL+A   I G  + A LLL  F WG  FL +N EL++
Sbjct:   137 LLPYLVAANPVNYGRPWRLNCVEALAACFAIVGHTDWAELLLSNFSWGLTFLKINEELIE 196

Query:   121 AYSKCENSADIISVQNDWLSQ 141
              Y +C +S  I   Q  WL +
Sbjct:   197 LYQQCTDSESITKAQEQWLEK 217

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
pfam04034	128	pfam04034, DUF367, Domain of unknown function (DUF	7e-70
COG2042	179	COG2042, COG2042, Uncharacterized conserved protei	3e-58
PRK02287	171	PRK02287, PRK02287, hypothetical protein; Provisio	2e-54

>gnl|CDD|112833 pfam04034, DUF367, Domain of unknown function (DUF367)

 Score =  207 bits (530), Expect = 7e-70
 Identities = 76/127 (59%), Positives = 101/127 (79%)

Query: 13  IVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVN 72
           +VL+P     +S ED  +++R G+AVVDCSWARL +VPF K+R    RLLP+LVAANPVN
Sbjct: 1   LVLTPFAEIALSPEDKDIVERSGIAVVDCSWARLEEVPFKKIRGRHERLLPFLVAANPVN 60

Query: 73  YGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADII 132
           YG+PC+LSCVEAL+AAL I G ++ A+ LL KFKWGH FL LN+ELL+AYS CE+S +I+
Sbjct: 61  YGKPCKLSCVEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEAYSNCEDSDEIV 120

Query: 133 SVQNDWL 139
            ++N++L
Sbjct: 121 EIENEYL 127

Length = 128

>gnl|CDD|224953 COG2042, COG2042, Uncharacterized conserved protein [Function unknown]

 Score =  180 bits (458), Expect = 3e-58
 Identities = 71/139 (51%), Positives = 96/139 (69%), Gaps = 1/139 (0%)

Query: 4   LRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLP 63
           LRV   F G+VL+P     +S  D  +++R G+ VVDCSW R+  V F KLR    R LP
Sbjct: 41  LRVGGKFPGVVLTPFAEKALSPADRDIVERFGITVVDCSWNRVERV-FKKLRGREHRRLP 99

Query: 64  WLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYS 123
           +LVAANPVNYG+P +LS  EAL+AAL I G ++ A+ LL KFKWGH FL LN+ELL+ YS
Sbjct: 100 FLVAANPVNYGKPFKLSSAEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEEYS 159

Query: 124 KCENSADIISVQNDWLSQQ 142
             E+SA+++ +Q ++L + 
Sbjct: 160 NAEDSAEVVEIQEEYLEKG 178

Length = 179

>gnl|CDD|235024 PRK02287, PRK02287, hypothetical protein; Provisional

 Score =  170 bits (433), Expect = 2e-54
 Identities = 62/129 (48%), Positives = 88/129 (68%), Gaps = 1/129 (0%)

Query: 11  GGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANP 70
           G IVL+P     +S  D  +++++G+  +DCSW     V F KL     R LP+LVAANP
Sbjct: 40  GSIVLNPFAEKALSPADRDIVEKRGIVALDCSWNEAERV-FFKLLRGHHRRLPFLVAANP 98

Query: 71  VNYGRPCELSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSAD 130
           VNYG+P +LS VEAL+AAL I G +E A  +L KFKWGH FL LN+E L+AY++ ++S +
Sbjct: 99  VNYGKPFKLSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEE 158

Query: 131 IISVQNDWL 139
           I+ +Q ++L
Sbjct: 159 IVEIQKEYL 167

Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
KOG3154	263	consensus Uncharacterized conserved protein [Funct	100.0
PF04034	127	DUF367: Domain of unknown function (DUF367); Inter	100.0
COG2042	179	Uncharacterized conserved protein [Function unknow	100.0
PRK02287	171	hypothetical protein; Provisional	100.0
PF03942	203	DTW: DTW domain; InterPro: IPR005636 This presumed	97.68
KOG3795	230	consensus Uncharacterized conserved protein [Funct	86.57
COG3148	231	Uncharacterized conserved protein [Function unknow	86.41
cd00593	133	RIBOc RIBOc. Ribonuclease III C terminal domain. T	82.84

>KOG3154 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.2e-73  Score=488.07  Aligned_cols=191  Identities=52%  Similarity=0.891  Sum_probs=171.3

Q ss_pred             CccccCCCCcccEEeCCCCCccCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCccccc
Q 039464            1 MQELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELS   80 (192)
Q Consensus         1 ~~~lr~~~~f~GIVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~kLs   80 (192)
                      ++.||++|+|+||||||.|++++||+|+++|+++|++||||||+||+++||.||+++|.|+||||||||||||||||+||
T Consensus        69 v~~lr~g~kF~GvVlSP~gk~~vsp~D~d~v~~~G~avvdCSWArLdevpF~kl~~~h~RLLP~lVAANpVNYGrP~rLn  148 (263)
T KOG3154|consen   69 VRNLRVGQKFGGVVLSPVGKQCVSPADRDVVERSGAAVVDCSWARLDEVPFGKLRGRHERLLPYLVAANPVNYGRPWRLN  148 (263)
T ss_pred             HHHhhccCccCceEECCCCCcccCHHHHHHHHhcCceEEecchhhccccchhhcCCCcccccchhhhcCccccCCCceec
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHhcCCchhhHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCCCCCCccc-CCCCc
Q 039464           81 CVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQSRVPKVPSDVEG-VDSNE  159 (192)
Q Consensus        81 cvEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~~~~~~~~~~~~~-~~~~~  159 (192)
                      |||||||+||||||.++|..||++|||||.||+||++||+.|++|.+++||+++|++||+++.+.++.+.+... .|++.
T Consensus       149 CvEAlaA~l~I~G~~e~A~~lL~~F~wG~~Fl~lN~~lLd~Ya~C~~s~ev~~~qn~~Le~~~~~~Qe~~~~~~~~d~g~  228 (263)
T KOG3154|consen  149 CVEALAACLYICGFPEEARELLDKFKWGHAFLELNKDLLDEYAKCASSAEVVEVQNEFLESQEKSPQEPRARPIDVDAGN  228 (263)
T ss_pred             HHHHHHhHeeeecChhHHHHHHhcCcchHHHHHHhHHHHHHHHhhCCHHHHHHHHHHHHHHhhhcccCCccccchhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999887654333222 11111


Q ss_pred             c--ccCCCCCCCCCCccccccCcCCCCCCCCCcC
Q 039464          160 D--EASSDASDDVLPPLEKNMNHMNLLESDGEES  191 (192)
Q Consensus       160 ~--~~~~~~~dd~~~~l~~n~n~~~~~~~~~~~~  191 (192)
                      +  ..+.++|++.+|+..++++|...+.+.+++.
T Consensus       229 ~~~~~s~~~sst~~~~~s~~~d~~~~~~~~~~d~  262 (263)
T KOG3154|consen  229 ENGKPSLSTSSTHLPEESRDSDHEPSEASLAEDD  262 (263)
T ss_pred             ccCCCCcCccccCCCccccCccccCCCcchhhcc
Confidence            1  2334446778999999999998887777664

>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function

Probab=100.00  E-value=6.3e-69  Score=427.64  Aligned_cols=127  Identities=60%  Similarity=1.074  Sum_probs=125.5

Q ss_pred             EEeCCCCCccCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCcccccHHHHHHHHHHHc
Q 039464           13 IVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALSAALIIC   92 (192)
Q Consensus        13 IVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~kLscvEAlAAaLyI~   92 (192)
                      |||||+|+++|||+||++|+++||+||||||++++++ |.+++.+++|+|||||||||||||||||||||||+||||||+
T Consensus         1 ivLsP~~~~~lSp~Dr~iv~~~Gi~viDCSW~~l~~~-f~k~~~~~~R~LP~LvAaNPVNYGkP~kLscvEAlAAaLyI~   79 (127)
T PF04034_consen    1 IVLSPFATKYLSPADREIVEKSGIAVIDCSWNRLDEV-FKKLRSRNHRLLPYLVAANPVNYGKPCKLSCVEALAAALYIL   79 (127)
T ss_pred             CeeCCCCCcccCHHHHHHHHHCCEEEEECcHHHHHHH-HHhcCCCCCccCchhhccCCcccCCcccccHHHHHHHHHHHc
Confidence            7999999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCchhhHHHHhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039464           93 GEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLS  140 (192)
Q Consensus        93 G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~  140 (192)
                      |++++|++||++|||||+|++||+++|++|++|+|++||+++|++||+
T Consensus        80 G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~le  127 (127)
T PF04034_consen   80 GFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYLE  127 (127)
T ss_pred             CCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999985

It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).

>COG2042 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.4e-66  Score=431.53  Aligned_cols=140  Identities=51%  Similarity=0.889  Sum_probs=137.0

Q ss_pred             ccccCCCCcccEEeCCCCCccCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCcccccH
Q 039464            2 QELRVSSGFGGIVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSC   81 (192)
Q Consensus         2 ~~lr~~~~f~GIVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~kLsc   81 (192)
                      +.+|++++|.||||+|++.++|||+|+++++++||+||||||++++.+ |.++++++||+||||||||||||||||+|||
T Consensus        39 ~~~r~~~~~~~vvL~P~ae~~lSp~D~~iver~Gi~vvdcSW~~~~~~-f~~l~~~~~R~LP~LvAaNPVNYGkp~kLss  117 (179)
T COG2042          39 RLLRVGGKFPGVVLTPFAEKALSPADRDIVERFGITVVDCSWNRVERV-FKKLRGREHRRLPFLVAANPVNYGKPFKLSS  117 (179)
T ss_pred             hhhcccCccceeEECCCcccccChhhHHHHHhcCeEEEEccHHHHHHH-HHhcCccccccccHhhhcCCcccCCcchhch
Confidence            568999999999999999999999999999999999999999999999 8999988999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHhcCCchhhHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039464           82 VEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQ  142 (192)
Q Consensus        82 vEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~  142 (192)
                      |||+||||||+||+++|.+||++|+|||+||+||+++|++|++|+++.||+++|++||+++
T Consensus       118 ~EAlaAaLYI~G~~deA~~lls~F~WG~~FleLN~e~Le~Y~~a~~s~eVveiq~~~l~~~  178 (179)
T COG2042         118 AEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEEYSNAEDSAEVVEIQEEYLEKG  178 (179)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHhhCcccHHHHHHhHHHHHHHHhccchHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999875

>PRK02287 hypothetical protein; Provisional

Probab=100.00  E-value=6.8e-65  Score=421.17  Aligned_cols=141  Identities=45%  Similarity=0.795  Sum_probs=134.2

Q ss_pred             CccccCCCCcc-c-EEeCCCCCccCCcccHHHHHhcCeEEEecccccccccccccccCCCCcccchhhhhCCCCCCCccc
Q 039464            1 MQELRVSSGFG-G-IVLSPVGTHCVSKEDYSLIKRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCE   78 (192)
Q Consensus         1 ~~~lr~~~~f~-G-IVLsP~~~~~lSp~D~~ii~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~LvAANPVNYGKP~k   78 (192)
                      +|.++++++|. | |||||+|+++|||+|+++++++||+||||||+++++++|.+++ +++|+||||||||||||||||+
T Consensus        28 ~~~~~~~~~~~~g~IvL~P~a~~~lSp~D~~~~~~~Gi~vlDcSW~~~~~~~~~~~~-~~~R~LP~LvAaNPvNYGkp~k  106 (171)
T PRK02287         28 ARLVRSIRKIPRGSIVLNPFAEKALSPADRDIVEKRGIVALDCSWNEAERVFFKLLR-GHHRRLPFLVAANPVNYGKPFK  106 (171)
T ss_pred             eeEecccccCCCCeEEECCCCCcCcCHHHHHhhhhCCEEEEECCHHHHhhhhhhccC-CCcccCccccccCCCcCCCccc
Confidence            46788899864 4 9999999999999999999999999999999999999998775 5689999999999999999999


Q ss_pred             ccHHHHHHHHHHHcCChHHHHHHHhcCCchhhHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 039464           79 LSCVEALSAALIICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENSADIISVQNDWLSQQ  142 (192)
Q Consensus        79 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~  142 (192)
                      ||||||+||||||+|++++|.+||++|+|||+||+||+++|++|++|+|++||+++|++||.+.
T Consensus       107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~~~  170 (171)
T PRK02287        107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLGKI  170 (171)
T ss_pred             ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999764

>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins

Probab=97.68  E-value=2.8e-05  Score=64.57  Aligned_cols=77  Identities=29%  Similarity=0.279  Sum_probs=51.5

Q ss_pred             HhcCeEEEecccccccccccccccCCCCcccch--hhhhCCCCCC-----CcccccHHHHHHHHHHHcCCh-HH-HHHHH
Q 039464           32 KRKGLAVVDCSWARLGDVPFVKLRCSAPRLLPW--LVAANPVNYG-----RPCELSCVEALSAALIICGEE-ET-ANLLL  102 (192)
Q Consensus        32 ~~~GlaVIDCSW~~l~~~~f~k~~~~~~R~LP~--LvAANPVNYG-----KP~kLscvEAlAAaLyI~G~~-~~-A~~lL  102 (192)
                      ....+.|||++|+++..|.-.   ....+.||-  |-...+-.|.     ++..|||+||+|.+|..+|.. +. ++.||
T Consensus       113 ~~~~lIviDgTW~qA~km~~~---~p~l~~lp~v~l~~~~~s~y~lRk~~~~~~lsT~EAv~~~L~~l~~~~~~~~~~Ll  189 (203)
T PF03942_consen  113 KPKTLIVIDGTWRQAKKMLRR---SPWLQQLPRVSLKPSPPSFYRLRKQPKEGCLSTLEAVAYALKELEEAPDEVADNLL  189 (203)
T ss_pred             CceEEEEECCchHHHHHHHhh---CccccCCceeeCCCCcccceeeEecCCCCCEeHHHHHHHHHHHhcchhHHHHHHHH
Confidence            346799999999998776320   112222332  1122222332     677999999999999999999 54 89999


Q ss_pred             hcCCchhhH
Q 039464          103 GKFKWGHAF  111 (192)
Q Consensus       103 ~~FkWG~~F  111 (192)
                      ..|+.--.+
T Consensus       190 ~~f~~~~~~  198 (203)
T PF03942_consen  190 DAFDAMVRR  198 (203)
T ss_pred             HHHHHHHHH
Confidence            888765443

Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.

>KOG3795 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.57  E-value=0.75  Score=40.08  Aligned_cols=97  Identities=20%  Similarity=0.290  Sum_probs=53.6

Q ss_pred             CeEEEecccccccccc-cccccCCCCcccc-hhhhh-CCCCCCCc-ccccHHHHHHHHHHHcCChHHHHHHHhcCCchhh
Q 039464           35 GLAVVDCSWARLGDVP-FVKLRCSAPRLLP-WLVAA-NPVNYGRP-CELSCVEALSAALIICGEEETANLLLGKFKWGHA  110 (192)
Q Consensus        35 GlaVIDCSW~~l~~~~-f~k~~~~~~R~LP-~LvAA-NPVNYGKP-~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~  110 (192)
                      -+.||||+|++...|- -.++++-.+-.|- ++-+- -| .-|-| +.|.++||+.-.|     .+-     ..-+||-.
T Consensus       124 r~v~~d~tw~q~~~~~~~~~i~gl~~v~lq~~~s~fwr~-q~~~p~~~latieai~~~l-----~e~-----~~~~~g~~  192 (230)
T KOG3795|consen  124 RIVVLDCTWFQVGVMQKTPQIQGLQHVSLQSYRTAFWRP-QHNVPETGLATIEAIYYSL-----REY-----QELGLGRK  192 (230)
T ss_pred             EEEEEeceehhhcceecCccccceeeeehhhHHHHhccc-ccCCchhhHhHHHHHHHHH-----HHH-----HHhhhhhh
Confidence            4899999999987662 1233332222222 12111 12 22233 5899999998776     221     22357764


Q ss_pred             HHHHhHHHHHHHhcCCCHHHHHHHHHHHHHhccc
Q 039464          111 FLSLNRELLKAYSKCENSADIISVQNDWLSQQSR  144 (192)
Q Consensus       111 Fl~LN~elLe~Y~~c~~~~Ev~~~q~~yl~~~~~  144 (192)
                      +--+..  ++.|.--.+-.++...|..|+..-++
T Consensus       193 y~g~~~--~~~~~~fh~~~~~~~k~a~~~~~~~e  224 (230)
T KOG3795|consen  193 YSGEFD--DLLYWFFHTKHFVDGKQADYLRRKDE  224 (230)
T ss_pred             hcCcch--hHHHhhhhhhhccccchhhhhhhccc
Confidence            443333  33455556677777777777755443

>COG3148 Uncharacterized conserved protein [Function unknown]

Probab=86.41  E-value=0.56  Score=41.48  Aligned_cols=79  Identities=19%  Similarity=0.267  Sum_probs=52.2

Q ss_pred             eEEEeccccccccccccc--ccC------CCCcccchhhhhCCCCCCCcccccHHHHHHHHHHHcCChHHHHHHHhcCCc
Q 039464           36 LAVVDCSWARLGDVPFVK--LRC------SAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEETANLLLGKFKW  107 (192)
Q Consensus        36 laVIDCSW~~l~~~~f~k--~~~------~~~R~LP~LvAANPVNYGKP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkW  107 (192)
                      +.++|.+|.++-+|.-+.  +..      ...|+=-|-+.-+|    .+-.|++||+.++.|-..|-...|+.|+..|- 
T Consensus       132 fIllDgTW~eArKMfrksPyLa~lP~vsl~~~~lS~YRLRka~----~e~~lcT~Eva~~lLd~~gd~~aae~L~~~f~-  206 (231)
T COG3148         132 FILLDGTWREARKMFRKSPYLADLPVVSLDPERLSAYRLRKAQ----AEGQLCTAEVAAALLDMAGDERAAEALGKHFD-  206 (231)
T ss_pred             EEEecCccHHHHHHHhcCchhccCCccccCHHHhhHHHHhhCC----CCCceeHHHHHHHHHHHhCChhhhHHHHHHHH-
Confidence            567799999877664211  000      01122223344455    77899999999999999999999999977662 


Q ss_pred             hhhHHHHhHHHHHHHhcCCCH
Q 039464          108 GHAFLSLNRELLKAYSKCENS  128 (192)
Q Consensus       108 G~~Fl~LN~elLe~Y~~c~~~  128 (192)
                               -..+.|-.|++.
T Consensus       207 ---------~f~e~yla~k~~  218 (231)
T COG3148         207 ---------AFKERYLAGKSE  218 (231)
T ss_pred             ---------HHHHHHHhcCcc
Confidence                     234556666543

>cd00593 RIBOc RIBOc

Probab=82.84  E-value=1.2  Score=33.44  Aligned_cols=28  Identities=29%  Similarity=0.268  Sum_probs=24.7

Q ss_pred             cccHHHHHHHHHHHcCChHHHHHHHhcC
Q 039464           78 ELSCVEALSAALIICGEEETANLLLGKF  105 (192)
Q Consensus        78 kLscvEAlAAaLyI~G~~~~A~~lL~~F  105 (192)
                      .=+++||+.+|+|+.+-.+.|.+++..+
T Consensus        96 ~ad~~eAliGAiyld~g~~~~~~~i~~~  123 (133)
T cd00593          96 LADVFEALIGAIYLDGGFEAARKFLLRL  123 (133)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4578999999999999989999998776

Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00