Citrus Sinensis ID: 039497

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640--
Protein Sequence
MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF
Secondary Structure (PSIPRED)
ccccccEEEEEEccccccccEEEEccccccccccccEEccccccccEEEccccccccEEEEEEEcccccEEEEEccccccEEEEcccccccccccccccccEEEEEEEEccccccccccEEEEEEEcccccEEEcccccccccEEEEcccccEEEEEEcccccccccccccEEEEEEEEcccccEEEEEEccccccEEcccccEEEEEEcccccEEEEEEEcccccccccccccEEEEcccccccccccccccccEEEEEEEcccccEEEEEEEEEcccccccccccEEcccccEEEEEEEEccccccccccEEEcccccccccEEEEcccccccEEEccccEEEEEEcccccEEEEEEEccccccEEEEcccccccEEEcccccEEEEEEccccccccccEEEEEEEEEEccccccccccccccccEEEcccccccccccEEcccccEEEEEEcccccccEEEEEcccccccccEEEcccccccccccEEcccccEEEEEEccccccccccEEEEEEccccccEEEEEEccccccccccccccccEEEcccccEEEEEEcccccccccccccccccccEEEEEEEccccccEEcccccccccccEEcccccEEEEEEEEcccccccEEccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccccEEEEEcccccccccccHccEcccccEEEEccccccccccEEEEEEEccccccEEEEcccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEccccccEEEEcccccEEEcccEcccccEEEEEEccccccccEEEEcccEEEEEEccccccEEEEEcccccccEcccccEEEEEEcccccEEEEEEEccccccccccccccEEccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccEEccccEcccccEEEEEEEEcccccccEEEEEEcccccccEEEEEEccccccccEcccccEEEEEcccccccEEEEEEcccccEEEEEcccccccccccccccEEEEEEEcccccccccEEEEEEEEccccccccEEEEEcccccEEEEEccccccccccccccccEEEEEEccccccEEEEEEcccccccccEEEEEccccccccccEcccccEEEEEEccccccccccEEEEEEEcccccEEEEEEccccccccccccccccccEcccccEEEEEEcccccccccccccccccccccEEEEEcccccEEEEcccccccccccccccccEEEEEEcccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mepkgtivfttvgrpyygfdvfsikspfvnapkfhehrltdgtsinfnaqfvdgqdqTIAFISersgspriyqtrpgssktellpsipcslfhdrpvarnnKLFFisaheqpdqIFKSWSALYstdlkaskftrltpygvvdyspsvsysgKFIAVAsyesrpwpgefhelnTDIVVFqesdpnkrVIVCerggwptwsgdstiyfhrqaddgwwsifrvsfpenleflgfpiaptrvtppgvhcftpaafhdgkRLAVATRrknrnfrhieiydltlnpnfhhynpfvsansefigyhrfrgestegqstiphlepvaspvKELRMLrlngsfpsfspdgglivfnhdfelnagikiaksdgskrwtLIKDRtafynswsptekhviytstgpifqserATVQIARVSfqldpsddnnreeipcdvkiltkeetgnnafpscspdgkflvfrsgrsghknlFVLDAvngefngdirqltdgpwidtmpswspkgdliafssnrhnpdnveafslyvikpdgsglrrihvagpegsgdvdrerinhvcfsadgEWLLFTANLgavmaepvswpnqfqpygdlyvvkldgsglrrltwngyengtpawhpgnqldlgklrleddigdklrgqfdeplwiscdf
Flexible Loop (DISEMBL)
mepkgtivfttvgrpyyGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFIsersgspriyqtrpgssktellPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTpaafhdgkrlavatrrknrnfRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGestegqstiphlepvASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIkiaksdgskrwTLIKDRTAfynswspteKHVIYTSTGPIFQSERATVQIARVsfqldpsddnnreEIPCDVKIltkeetgnnafpscspdGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAgpegsgdvdreRINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKlrgqfdeplwiscdf
Low Complexity Region (SEG)
MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF
Disordered region (IsUnstruct)
*****TIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI*********************LPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFR**********************LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ************PCDVKILT********F*SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG*****DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISC**
Disordered Region (DISOPRED)
*EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF
Disordered Region (DISEMBL)
MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIY*********ELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF
Disordered Region (DISPRO)
***KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP*G****DRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	642	2.2.26 [Sep-21-2011]
A8LHQ6	446	Protein TolB OS=Dinoroseo	yes	no	0.214	0.309	0.331	5e-11
Q145B2	430	Protein TolB OS=Burkholde	yes	no	0.338	0.504	0.243	5e-11
B2T077	430	Protein TolB OS=Burkholde	yes	no	0.338	0.504	0.240	8e-11
Q3APB5	440	Protein TolB OS=Chlorobiu	yes	no	0.272	0.397	0.279	1e-10
Q39PS9	429	Protein TolB OS=Geobacter	yes	no	0.358	0.536	0.269	1e-10
Q3B584	436	Protein TolB OS=Pelodicty	yes	no	0.211	0.311	0.317	2e-10
B2JGA0	430	Protein TolB OS=Burkholde	yes	no	0.423	0.632	0.242	2e-10
Q74H67	432	Protein TolB OS=Geobacter	yes	no	0.367	0.546	0.268	7e-10
Q83F59	437	Protein TolB OS=Coxiella	yes	no	0.277	0.407	0.248	1e-09
Q20X63	447	Protein TolB OS=Rhodopseu	yes	no	0.218	0.313	0.317	1e-09

>sp|A8LHQ6|TOLB_DINSH Protein TolB OS=Dinoroseobacter shibae (strain DFL 12) GN=tolB PE=3 SV=1

 Score = 70.1 bits (170), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 78/169 (46%), Gaps = 31/169 (18%)

Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
           PS SPDG+ +VF S RSG + L+V+ A  GE     R+++ GP     P WSP+GDLIAF
Sbjct: 306 PSFSPDGRQIVFESDRSGSQQLYVMSATGGE----ARRISFGPGRYGTPVWSPRGDLIAF 361

Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
           +       N   F + V++ DGS  R +       S  +D        +S +G  ++FT 
Sbjct: 362 TKQ-----NQGRFHIGVMRTDGSEERLLT------SSFLD----ESPTWSPNGRVIMFTR 406

Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
                   P            LY V + G  LRR+   G  +  PAW P
Sbjct: 407 ETSGAGGAP-----------SLYSVDISGRNLRRVPTPGAAS-DPAWSP 443

Involved in the TonB-independent uptake of proteins.
Dinoroseobacter shibae (strain DFL 12) (taxid: 398580)

>sp|Q145B2|TOLB_BURXL Protein TolB OS=Burkholderia xenovorans (strain LB400) GN=tolB PE=3 SV=1

 Score = 70.1 bits (170), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 111/287 (38%), Gaps = 70/287 (24%)

Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
           ++I+ SDG      +       + +WSP    V Y S    F+ ++  V I         
Sbjct: 178 LQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI--------- 224

Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
                  ++P   +I+  ++ GNN+ P+ SPDG+ L     R+G+  +F   AVN + +G
Sbjct: 225 ------HDLPTGRRIVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG 275

Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
            +R+LT G  IDT P +SP G  I F+S+R     +   S                    
Sbjct: 276 -LRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYNT 334

Query: 517 --VIKPDGSGLRRIH------------VAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
              + PDG  L  I             + G   +G  D        F+A+G+++L+    
Sbjct: 335 SPRVSPDGKQLAYISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYA--- 391

Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
                       Q    G L  V  DG   + L+  G     P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427

Involved in the TonB-independent uptake of proteins.

Burkholderia xenovorans (strain LB400) (taxid: 266265)

>sp|B2T077|TOLB_BURPP Protein TolB OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=tolB PE=3 SV=1

 Score = 69.7 bits (169), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 111/287 (38%), Gaps = 70/287 (24%)

Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
           ++I+ SDG      +       + +WSP    V Y S    F+ ++  V I         
Sbjct: 178 LQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI--------- 224

Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
                  ++P   +++  ++ GNN+ P+ SPDG+ L     R+G+  +F   AVN + +G
Sbjct: 225 ------HDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNADGSG 275

Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------------ 516
            +R+LT G  IDT P +SP G  I F+S+R     +   S                    
Sbjct: 276 -LRRLTQGSSIDTEPCFSPDGQSIYFTSDRGGQPQIYKMSAQGENAGAAQRVTFTGSYNT 334

Query: 517 --VIKPDGSGLRRIH------------VAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
              + PDG  L  I             + G   +G  D        F+A+G+++L+    
Sbjct: 335 SPRVSPDGKQLAYISRVGGGFKLYIQDLQGNTATGLTDTTHDESPSFAANGQYILYA--- 391

Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
                       Q    G L  V  DG   + L+  G     P+W P
Sbjct: 392 -----------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427

Involved in the TonB-independent uptake of proteins.

Burkholderia phytofirmans (strain DSM 17436 / PsJN) (taxid: 398527)

>sp|Q3APB5|TOLB_CHLCH Protein TolB OS=Chlorobium chlorochromatii (strain CaD3) GN=tolB PE=3 SV=1

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 47/222 (21%)

Query: 402 TVQIARVSFQLDPSDDNNRE----------------EIPCDVKILTKEETGNNAFPSCSP 445
           T ++A+    +DP+  N+RE                +    VK      +G +  P+ SP
Sbjct: 245 TTRVAKKGNSIDPAWRNSRELATTFSFEGDQELYLLDSAGAVKQRLTSSSGIDLSPTFSP 304

Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
           DG+ + F S RSG+  +FV D  +G+     ++LT     +T P+WSP GD IAFS+   
Sbjct: 305 DGRKMAFVSARSGNPQIFVYDFSSGK----SQRLTFSGRYNTQPAWSPIGDKIAFSTWES 360

Query: 506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
             +     +++VI  DGSGL ++     E              +S DG  ++F +N    
Sbjct: 361 GGE----INIFVINTDGSGLTQLTTQSGEN---------ESPSWSPDGRMIVFASNR--- 404

Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
                      Q    LYV+  DG   R L   G E   P+W
Sbjct: 405 -----------QGVKKLYVMMADGKNQRPLLAIGGEQTQPSW 435

Involved in the TonB-independent uptake of proteins.

Chlorobium chlorochromatii (strain CaD3) (taxid: 340177)

>sp|Q39PS9|TOLB_GEOMG Protein TolB OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=tolB PE=3 SV=1

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 119/304 (39%), Gaps = 74/304 (24%)

Query: 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS----TG 393
           P  G I F         I +   DG     L K+R+   N  +SP+ K +I+TS      
Sbjct: 165 PFTGKIAFVSTRAGAKAIFLMDYDGHNVQQLTKNRSINLNPDFSPSGKEIIFTSYRQGNP 224

Query: 394 PIFQSERATVQIARVS-----------------FQLDPSDDNNREEIPCDVKILTKEETG 436
            +F+ E  T   AR+S                   L  S D N E       I T    G
Sbjct: 225 DLFRRELFTGAEARISSYRGINATGAWSPDGKTIALTLSKDGNSE-------IYTISRDG 277

Query: 437 NN-----------AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI 485
            N             P+ SPD + +VF S R G   +F+++A +G     +R+LT     
Sbjct: 278 KNPHRLTNTSAIEVSPAWSPDVRKIVFVSDRLGKPQIFIMNA-DGT---GVRRLTTSGNY 333

Query: 486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN 545
           +  P WSPKGD I +S           F +Y I PDG+   R+     EGS +       
Sbjct: 334 NVSPRWSPKGDRIVYSRQEG------GFQIYAINPDGTNDTRLT---SEGSNE------- 377

Query: 546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
           H  +S DG ++ F++  G                  +YV++ DGSG  R++     +  P
Sbjct: 378 HPRWSPDGRFITFSSTRGGGEG--------------IYVMRADGSGQTRVSGGKGRDSHP 423

Query: 606 AWHP 609
            W P
Sbjct: 424 TWSP 427

Involved in the TonB-independent uptake of proteins.

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

>sp|Q3B584|TOLB_PELLD Protein TolB OS=Pelodictyon luteolum (strain DSM 273) GN=tolB PE=3 SV=2

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 31/167 (18%)

Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
           PS SPDG  + F S R G+  +F+LD   G+     R+LT     +T PSWSP GD IA+
Sbjct: 297 PSFSPDGTKMAFVSARFGNPQVFILDLGTGQ----TRRLTYNGNYNTQPSWSPGGDKIAY 352

Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
           ++   N +     +++ I+PDGSG  R+       SG  + E      +S  G+ ++FT+
Sbjct: 353 TTMEKNGE----INIFTIRPDGSGATRLT------SGARENE---SPSWSPGGDMIVFTS 399

Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
                           Q    LYV+  +G   RRL     E   P+W
Sbjct: 400 GR--------------QGQKKLYVMNANGDNQRRLLQMEGEQMQPSW 432

Involved in the TonB-independent uptake of proteins.

Pelodictyon luteolum (strain DSM 273) (taxid: 319225)

>sp|B2JGA0|TOLB_BURP8 Protein TolB OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=tolB PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 134/350 (38%), Gaps = 78/350 (22%)

Query: 300 RFRGESTEGQSTIPHLEPVASPVKELRMLRLNGS---FPSFSPDGGLIVFNHDFELNAG- 355
           RF+   T  Q ++  LE V SP   LRM     +   +       G+      + +  G 
Sbjct: 116 RFKLYDTVNQQSLGGLELV-SPEGGLRMSAHKVADYIYAKLMGGRGVFATRLSYVIKTGN 174

Query: 356 ---IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ 411
              ++I+ SDG      +       + +WSP    V Y S    F+ ++  V I      
Sbjct: 175 RYQLQISDSDGQDAHIALSSPEPIISPAWSPDGTKVAYVS----FEKKKPIVYI------ 224

Query: 412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
                     ++P   +++  ++ GNN+ P+ SPDG+ L     R+G+  +F   AVN +
Sbjct: 225 ---------HDLPTGRRVVVSDQKGNNSAPAWSPDGRTLAVALSRTGNTQIF---AVNAD 272

Query: 472 FNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN-------PDNVEAFSLYV------- 517
            +G +R+LT G  IDT PS+SP G  I F+S+R         P + EA            
Sbjct: 273 GSG-LRRLTQGSSIDTEPSYSPDGQSIYFTSDRGGQPQIYKMPASGEASGGAQRVTFTGN 331

Query: 518 ------IKPDGSGLRRIHVAGPE------------GSGDVDRERINHVCFSADGEWLLFT 559
                 + PDG  L  I   G               +   D        F+A+G+++L+ 
Sbjct: 332 YNTSPRVSPDGKQLAYISRTGGGFKLYIQDLQSGVATALTDTTHDESPSFAANGQYILYA 391

Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
                          Q    G L  V  DG   + L+  G     P+W P
Sbjct: 392 --------------TQVNGRGVLAAVSTDGRTRQVLSVQGGSVREPSWGP 427

Involved in the TonB-independent uptake of proteins.

Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038)

>sp|Q74H67|TOLB_GEOSL Protein TolB OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=tolB PE=3 SV=1

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 114/298 (38%), Gaps = 62/298 (20%)

Query: 339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTS------ 391
           P  G I F      N  I +   DG     L K+R+   N  +SP  + + YTS      
Sbjct: 168 PFTGKIAFVSTESGNKEIYLMDYDGHNVQRLTKNRSINLNPDFSPNGRELAYTSYRRGNP 227

Query: 392 ---TGPIFQSERATVQIAR------------VSFQLDPSDDNNREEIPC-----DVKILT 431
                 IF    A V   R                L  S D N E         D + LT
Sbjct: 228 DLFRREIFTGTEAVVSSHRGINVTGTWSPDGKQLALAMSRDGNSEIYAISRDGRDPRRLT 287

Query: 432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW 491
             +   +  P+ SPDGK + F S R G   +F+++A       D+R+LT     +  P W
Sbjct: 288 THQ-AIDVSPAWSPDGKRIAFVSDRLGKPQVFIMNADGS----DVRRLTTSGAYNVSPRW 342

Query: 492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA 551
           SPKGD + +            F +Y I  DG+G  R+     EGS +       H  +S 
Sbjct: 343 SPKGDRLVYCRQEG------GFQIYSIATDGTGDTRLT---SEGSNE-------HPRWSP 386

Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
           DG +L F++      A              +YV++ DGSG  R+  +  +   P W P
Sbjct: 387 DGRFLTFSSTRDGGEA--------------IYVMRSDGSGQTRVYRSKGKASHPTWSP 430

Involved in the TonB-independent uptake of proteins.

Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231)

>sp|Q83F59|TOLB_COXBU Protein TolB OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=tolB PE=1 SV=1

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 27/205 (13%)

Query: 314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG---IKIAKSDG-SKRWTL 369
            L  +A  + +L   +L G    FS     ++     E  A    +++A +DG + +  L
Sbjct: 142 ELRNLAHHISDLIYQKLTGVRGVFSTKIAYVLVQASSENTAAKYTLEVADADGFNPQPLL 201

Query: 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
           + D      +WSP    + Y S    F+  RA + +               +++    + 
Sbjct: 202 VSDMPIMSPTWSPDGNKIAYVS----FEGHRAAIYL---------------QDLATGRRQ 242

Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
              E  G N  P+ SPDGK L     ++G+  +++L+  +G     +R++T G  IDT P
Sbjct: 243 RLSEAPGINGAPAFSPDGKQLALVLTKTGNPKIYILNLADGH----LREITKGWSIDTEP 298

Query: 490 SWSPKGDLIAFSSNRHNPDNVEAFS 514
           +WSP G  + F+SNR     +  +S
Sbjct: 299 AWSPDGKSLLFTSNRDGTPQIYNYS 323

Involved in the TonB-independent uptake of proteins.

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

>sp|Q20X63|TOLB_RHOPB Protein TolB OS=Rhodopseudomonas palustris (strain BisB18) GN=tolB PE=3 SV=2

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 33/173 (19%)

Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
           P  SPDG+ ++    + G+ NLFV+D  +        +LTD P IDT PS++P G  I F
Sbjct: 264 PRFSPDGQRVIMSLQQGGNSNLFVMDLRSKSTT----RLTDTPAIDTSPSYAPDGSKICF 319

Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA 560
            S+R     +     YV+   G G +RI     EGS        +   +S  G+++ FT 
Sbjct: 320 ESDRGGKPQI-----YVMPAGGGGAQRISFG--EGS-------YSTPVWSPRGDYIAFTK 365

Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
             G           QF     + ++K DGSG R LT +GY N  P + P  ++
Sbjct: 366 QGGG----------QF----SIGIMKPDGSGERLLT-SGYHNEGPTFAPNGRV 403

Involved in the TonB-independent uptake of proteins.

Rhodopseudomonas palustris (strain BisB18) (taxid: 316056)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	642
225437689	677	PREDICTED: uncharacterized protein LOC10	0.995	0.943	0.712	0.0
147767869	677	hypothetical protein VITISV_027089 [Viti	0.995	0.943	0.705	0.0
255548311	666	conserved hypothetical protein [Ricinus	0.992	0.956	0.707	0.0
20259480	657	unknown protein [Arabidopsis thaliana]	0.985	0.963	0.672	0.0
297809975	652	hypothetical protein ARALYDRAFT_490390 [	0.985	0.970	0.675	0.0
15234357	652	tolB-related protein [Arabidopsis thalia	0.985	0.970	0.672	0.0
449436369	642	PREDICTED: uncharacterized protein LOC10	0.973	0.973	0.637	0.0
356521141	656	PREDICTED: uncharacterized protein LOC10	0.984	0.963	0.627	0.0
358347278	650	Protein tolB [Medicago truncatula] gi|35	0.978	0.966	0.619	0.0
358347274	657	Protein tolB [Medicago truncatula] gi|35	0.976	0.954	0.603	0.0

>gi|225437689|ref|XP_002279803.1| PREDICTED: uncharacterized protein LOC100264112 [Vitis vinifera]

 Score =  971 bits (2510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/653 (71%), Positives = 541/653 (82%), Gaps = 14/653 (2%)

Query: 1   MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIA 60
           MEP GTI FTTVGRP+YGFD+FS+           E RLT GTSINFN  F+D ++QT+ 
Sbjct: 28  MEPTGTIAFTTVGRPHYGFDLFSLNLDPNLINHTSERRLTGGTSINFNGHFLD-ENQTLV 86

Query: 61  FISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWS 120
           ++SERSGSPRIYQ RPG +K E L S+P SL+HDRP+ +N +L+F+SAHE+P++ F SWS
Sbjct: 87  YVSERSGSPRIYQIRPGVTKPEQLLSVPGSLYHDRPIVKNGRLYFVSAHERPEKPFISWS 146

Query: 121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQE 180
           A+YST L      +LTP+GVVDYSP++S SGKFIAVASY SRPW GEFHEL+TDIVVF+E
Sbjct: 147 AVYSTGLDDKAVVQLTPHGVVDYSPAISRSGKFIAVASYGSRPWGGEFHELHTDIVVFRE 206

Query: 181 SDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP 240
           S+P KRV+VCERGGWPTWSGDS +YFHRQADDGWWSIF V+ PE  +      AP R+TP
Sbjct: 207 SEPEKRVVVCERGGWPTWSGDSNLYFHRQADDGWWSIFSVNLPEGFQSSSISEAPRRITP 266

Query: 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPFVS 290
           P VHCFTPAA    KR+AVATRRK  NFRHIEI+D+          +LNPNFHHYNPFVS
Sbjct: 267 PRVHCFTPAAMQGSKRIAVATRRKGSNFRHIEIFDIDSKKFYPVTESLNPNFHHYNPFVS 326

Query: 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF 350
               F+GYHRFRGES+ G+STIPHL+PV SP+ ELRMLRLNGSFPSFSP G LI FNHDF
Sbjct: 327 PECGFLGYHRFRGESSPGESTIPHLDPVVSPINELRMLRLNGSFPSFSPAGDLIAFNHDF 386

Query: 351 ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
           E   G+KI KSDGSKRWT++KDRTAFYNSWSPTEKHVIYTS GPIF+S +ATVQIAR+SF
Sbjct: 387 EAKGGLKIVKSDGSKRWTVLKDRTAFYNSWSPTEKHVIYTSVGPIFESVKATVQIARISF 446

Query: 411 QLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
             DPS  D++RE+IP DVKILT+EETGNNAFPSCSPDGK +VFRSGRSG+KNL+++DAVN
Sbjct: 447 --DPSYLDDDREDIPADVKILTREETGNNAFPSCSPDGKSVVFRSGRSGNKNLYIIDAVN 504

Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
           GE  G IRQLT+GPWIDTMPSWSP G LIAFSSNRHNPDN+ AFS+YVI+PDGS LRR++
Sbjct: 505 GELEGGIRQLTEGPWIDTMPSWSPDGKLIAFSSNRHNPDNLNAFSIYVIRPDGSDLRRVY 564

Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
           VAG EGS DVDRERINHVCFSAD EWLLF ANLG + AEP+S PNQFQPYGDL+VV+LDG
Sbjct: 565 VAGSEGSVDVDRERINHVCFSADCEWLLFAANLGGMTAEPISLPNQFQPYGDLFVVRLDG 624

Query: 590 SGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
           SGL+RLTWNGYENGTPAWH GN++D+G++ L  + GDKL G+FDEPLWISC+ 
Sbjct: 625 SGLKRLTWNGYENGTPAWHTGNEVDMGRMCLGSENGDKLTGEFDEPLWISCEL 677

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767869|emb|CAN71280.1| hypothetical protein VITISV_027089 [Vitis vinifera]

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/653 (70%), Positives = 535/653 (81%), Gaps = 14/653 (2%)

Query: 1   MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIA 60
           MEP GTI FTTVGRP+YGFD+FS+           E RLT GTSINFN  F+D ++QT+ 
Sbjct: 28  MEPTGTIAFTTVGRPHYGFDLFSLNLDPNLINHTSERRLTGGTSINFNGHFLD-ENQTLV 86

Query: 61  FISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWS 120
           ++SE SGSPRIYQ RPG +K E L S+P SL+HDRP+ +N +L+F+SAHE+P++ F SWS
Sbjct: 87  YVSEXSGSPRIYQIRPGVTKPEQLLSVPGSLYHDRPIVKNGRLYFVSAHERPEKPFISWS 146

Query: 121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQE 180
           A+YST L       LTP+GVVDYSP++S SGKFIAVASY SRPW GEFHEL+TDIVVF+E
Sbjct: 147 AVYSTGLDDKAVVXLTPHGVVDYSPAISRSGKFIAVASYGSRPWGGEFHELHTDIVVFRE 206

Query: 181 SDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP 240
            +P KRV+VCERGGWPTWSGDS +YFHRQADDGWWSIF V+ PE  +      AP R+TP
Sbjct: 207 XEPEKRVVVCERGGWPTWSGDSNLYFHRQADDGWWSIFSVTLPEXFQSSSISEAPRRITP 266

Query: 241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPFVS 290
           P VHCFTPAA    KR+AVATRRK  NFRHIEI+D+          +LNPNFHHYNPFVS
Sbjct: 267 PRVHCFTPAAMQGSKRIAVATRRKGSNFRHIEIFDIDSKKFYPVTESLNPNFHHYNPFVS 326

Query: 291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF 350
               F+GYHRFRGES+ G+STIPHL+PV SP+ ELRMLRLNGSFP FSP G LI FNHDF
Sbjct: 327 PECGFLGYHRFRGESSPGESTIPHLDPVXSPINELRMLRLNGSFPXFSPAGDLIAFNHDF 386

Query: 351 ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
           E   G+KI KSDGSKRWT++KDRTAFYNSWSPTEKHVIYTS GPIF+S +ATVQIAR+SF
Sbjct: 387 EAKGGLKIVKSDGSKRWTVLKDRTAFYNSWSPTEKHVIYTSXGPIFESVKATVQIARISF 446

Query: 411 QLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
             DPS  D++RE+IP DVKILT+EETGNNAFPSCSPDGK +VFRSGRSG+KNL+++DAVN
Sbjct: 447 --DPSYLDDDREDIPADVKILTREETGNNAFPSCSPDGKSVVFRSGRSGNKNLYIIDAVN 504

Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
           GE  G IRQLT+G WIDTMPSWSP G LIAFSSNRHNPDN+ AFS+YVI+PDGS LRR++
Sbjct: 505 GELEGGIRQLTEGXWIDTMPSWSPDGKLIAFSSNRHNPDNLNAFSIYVIRPDGSDLRRVY 564

Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
           VAG EGS DVDRERINHVCFSAD EWLLF ANLG   AEP+S PNQFQPYGDL+VV+LDG
Sbjct: 565 VAGSEGSVDVDRERINHVCFSADCEWLLFAANLGGXTAEPISLPNQFQPYGDLFVVRLDG 624

Query: 590 SGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
           SGL+RLTWNGYENGTPAWH GN++D+G++ L  + GDKL G+FDEPLWISC+ 
Sbjct: 625 SGLKRLTWNGYENGTPAWHTGNEVDMGRMCLGSENGDKLTGEFDEPLWISCEL 677

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548311|ref|XP_002515212.1| conserved hypothetical protein [Ricinus communis] gi|223545692|gb|EEF47196.1| conserved hypothetical protein [Ricinus communis]

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/666 (70%), Positives = 552/666 (82%), Gaps = 29/666 (4%)

Query: 3   PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFH-----EHRLTDGTSINFNAQFVDGQ-- 55
           PKGT+VFTTVGRP YGFDVFSIK P  +   FH     EH LTDGTSIN+NAQFV  Q  
Sbjct: 4   PKGTVVFTTVGRPSYGFDVFSIKLP-SDLNSFHFSNSDEHCLTDGTSINYNAQFVTQQHH 62

Query: 56  -DQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQ 114
            +Q+I +ISERSG P +Y ++P  SK E LPS P SLFHDRP+ +N++L+FISAHE+PDQ
Sbjct: 63  QNQSIVYISERSGFPAMYLSKPNLSKPEQLPSAPESLFHDRPIIKNDRLYFISAHEKPDQ 122

Query: 115 IFKSWSALYSTDLKASK-----FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFH 169
           +F+SWSALYSTDL  S+      TRLTP+GVVD+SP++S SG FIAVASY SRPW GEFH
Sbjct: 123 LFRSWSALYSTDLSHSRREGDNVTRLTPFGVVDFSPAISLSGNFIAVASYGSRPWSGEFH 182

Query: 170 ELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFL 229
           ELNTDIVVF+ SDP+KR +V ERGGWPTWS DS IYFHRQA+DGWWSIF+V FPEN++ +
Sbjct: 183 ELNTDIVVFKASDPDKRAVVSERGGWPTWSLDSAIYFHRQAEDGWWSIFQVKFPENMDDV 242

Query: 230 GFPI-APTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT----------L 278
              + AP RVTPPGVHCFTPAA HDGKR+AVATRR ++ +RHIEI+DL           L
Sbjct: 243 SGSVNAPLRVTPPGVHCFTPAAMHDGKRIAVATRRPDKKYRHIEIFDLASGTFYPVTELL 302

Query: 279 NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFS 338
           NP+ HHYNPFVSA+S FIGYHRFRG S  G+ TI +LEPV SP+K+LRMLRLNGSFPSFS
Sbjct: 303 NPSLHHYNPFVSADSLFIGYHRFRGGSGHGERTIRNLEPVRSPIKDLRMLRLNGSFPSFS 362

Query: 339 PDGGLIVFNHDF-ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQ 397
           PDG L+ FN DF + + G+K+ KS+GSKRWTLIKDR AF NSWSPTEKHVI+TS GPIF+
Sbjct: 363 PDGNLMAFNPDFVDSSGGLKVVKSNGSKRWTLIKDRVAFCNSWSPTEKHVIFTSLGPIFE 422

Query: 398 SERATVQIARVSFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR 456
           S + TVQIARV+F+  PSD  ++  E+ CDVKILT+E+TGNNAFPSCSPDG+ LVFRSGR
Sbjct: 423 SAKTTVQIARVTFK--PSDLKSDHNEVSCDVKILTREDTGNNAFPSCSPDGESLVFRSGR 480

Query: 457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY 516
           SGHKNL+++DAV GEFNG IRQLT+GPWIDTMPSWSPKGDLIAFSSNRHNP+NV AFS+Y
Sbjct: 481 SGHKNLYIIDAVEGEFNGGIRQLTEGPWIDTMPSWSPKGDLIAFSSNRHNPNNVNAFSIY 540

Query: 517 VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF 576
           VI+PDGSGL+RIHVAG EGS + +R RINHVCFS DGEWLLFT NLG+V AEPVSWPNQF
Sbjct: 541 VIRPDGSGLKRIHVAGSEGSSEGERGRINHVCFSRDGEWLLFTGNLGSVTAEPVSWPNQF 600

Query: 577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPL 636
           QPYGDL+V +LDGSGL RLTWNG+ENGTPAWHP ++L+L  L L++D+ DKL GQFD+PL
Sbjct: 601 QPYGDLHVTRLDGSGLSRLTWNGFENGTPAWHPRSELELDSLCLDEDVEDKLTGQFDDPL 660

Query: 637 WISCDF 642
           WI+CD 
Sbjct: 661 WINCDI 666

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20259480|gb|AAM13860.1| unknown protein [Arabidopsis thaliana]

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/656 (67%), Positives = 525/656 (80%), Gaps = 23/656 (3%)

Query: 3   PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI 62
           PKGTI+FTTVGR +YGFDVFS+     N     E RLTDG S+NFNAQFV+ +   + F+
Sbjct: 9   PKGTIIFTTVGRTHYGFDVFSL-----NIATSVERRLTDGVSVNFNAQFVNDKSDDVVFV 63

Query: 63  SERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV-ARNNKLFFISAHEQPDQIFKSWSA 121
           SER+GS RIY+TR G SK E +P  P S FHDRP+  +NN+L+FISAHEQPD+ FK+WSA
Sbjct: 64  SERNGSARIYKTRSGISKPEQIPGAPESYFHDRPIITQNNRLYFISAHEQPDRYFKNWSA 123

Query: 122 LYSTDLKASK--FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
           LY+ +L ++K   TR+TP    D+SP+VS SG F+AVASY +R W GEFHE+NTDI VF+
Sbjct: 124 LYTVELNSAKREVTRVTPPDTTDFSPAVSQSGDFLAVASYGTRSWGGEFHEINTDITVFK 183

Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL-EFLGFPIAPTRV 238
            S P  RV++CERGGWPTWSGDST++FH QADDGWWSIFRV  PEN  E+  FPI P RV
Sbjct: 184 ASKPETRVVICERGGWPTWSGDSTVFFHHQADDGWWSIFRVDIPENFTEYTDFPITPIRV 243

Query: 239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPF 288
           TP G+HCFTPAAF DGKR+A+ATRR+  N RHIEIYDL          +LNP+FHHYNPF
Sbjct: 244 TPSGLHCFTPAAFRDGKRIALATRRRGVNHRHIEIYDLENTTFQPVTESLNPSFHHYNPF 303

Query: 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348
           VS +SEF+GYHRFRGEST+G+S +P++E + SP+K LR+LR+NGSFPS SP+G LI  N 
Sbjct: 304 VSPDSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNS 363

Query: 349 DFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408
           DF++N GIK++KSDGSKRWTLIKDRTAFYNSWSPTE+HVIYTS GPIF   R  VQIAR+
Sbjct: 364 DFDINGGIKVSKSDGSKRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFSPARIAVQIARI 423

Query: 409 SFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
            F  DPSD   ++E++PCDVKILT E TGNNAFPSCSPDGK +VFRSGRSGHKNL+++DA
Sbjct: 424 KF--DPSDLTADKEDLPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYIVDA 481

Query: 468 VNGEFNGD-IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
           VNGE NG  IR+LTDGPWIDTMP WSPKGDLI FSSNRHNP+N   F  YV++PDG+GLR
Sbjct: 482 VNGESNGGGIRRLTDGPWIDTMPCWSPKGDLIGFSSNRHNPENTAVFGAYVVRPDGTGLR 541

Query: 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
           RI ++GPEGS +  RER+NHV F+ DG+WL+F ANL  V AEPV+ PNQFQPYGDLYVVK
Sbjct: 542 RIQISGPEGSEEAARERVNHVSFNKDGDWLVFAANLSGVTAEPVTMPNQFQPYGDLYVVK 601

Query: 587 LDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
           LDG+GLRRLTWNGYE+GTP WH  ++LDL +L L    GDKL GQF+EPLWISCD 
Sbjct: 602 LDGTGLRRLTWNGYEDGTPTWHTADELDLSQLNLNGQDGDKLEGQFEEPLWISCDI 657

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809975|ref|XP_002872871.1| hypothetical protein ARALYDRAFT_490390 [Arabidopsis lyrata subsp. lyrata] gi|297318708|gb|EFH49130.1| hypothetical protein ARALYDRAFT_490390 [Arabidopsis lyrata subsp. lyrata]

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/656 (67%), Positives = 529/656 (80%), Gaps = 23/656 (3%)

Query: 3   PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI 62
           PKGTI+FTTVGR +YGFDVFS+     +     E RLTDG S+NFNAQFV+ +   + F+
Sbjct: 4   PKGTIIFTTVGRTHYGFDVFSL-----HIATAVERRLTDGVSVNFNAQFVNDKSDDVVFV 58

Query: 63  SERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV-ARNNKLFFISAHEQPDQIFKSWSA 121
           SER+GS RIY+TRPG S+ E LP  P S FHDRP+  ++N+L+FISAHEQPD+ FK+WSA
Sbjct: 59  SERNGSARIYKTRPGISEPEQLPGAPESYFHDRPIITQSNRLYFISAHEQPDRHFKNWSA 118

Query: 122 LYSTDLKASK--FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
           LY+ +L   +   TR+TP    D+SP+VS SG F+AVASY SR W GEFHE+NTDI VF+
Sbjct: 119 LYTVELNGEEREVTRVTPLDTADFSPAVSQSGDFLAVASYGSRSWGGEFHEINTDITVFK 178

Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLE-FLGFPIAPTRV 238
            S+P  RV++CERGGWPTWSGDST++FH QADDGWWSIFRV  PEN + +  FPI P RV
Sbjct: 179 ASEPETRVVICERGGWPTWSGDSTVFFHHQADDGWWSIFRVDIPENFKKYSDFPITPIRV 238

Query: 239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT----------LNPNFHHYNPF 288
           TP G+HCFTPAAFHDGKR+AVATRR+  N RHIEIYDL           LNP+FHHYNPF
Sbjct: 239 TPSGLHCFTPAAFHDGKRIAVATRRRGVNHRHIEIYDLDHKTFQPVTEPLNPSFHHYNPF 298

Query: 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348
           VS+NSEF+GYHRFRGEST+G+S +P++E + SP+K LR+LR+NGSFPS SP+G LI  N 
Sbjct: 299 VSSNSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNS 358

Query: 349 DFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408
           DF++N GIK+AKSDGSKRWTLIKDRTAFYNSWSPTE+HVIYTS GPIF+     VQIAR+
Sbjct: 359 DFDINGGIKVAKSDGSKRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFRPAGIAVQIARI 418

Query: 409 SFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
            F  DPSD   ++EE+PCDVKILT E TGNNAFPSCSPDGK +VFRSGRSGHKNL+++DA
Sbjct: 419 KF--DPSDLTADKEELPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYIVDA 476

Query: 468 VNGEFNGD-IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
           VNGE NG  IR+LT+GPWIDTMP WSPKGDLI FSSNRHNP N++AF  YV++PDGSGLR
Sbjct: 477 VNGESNGGGIRRLTEGPWIDTMPCWSPKGDLIGFSSNRHNPANIDAFGAYVVRPDGSGLR 536

Query: 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
           RI ++GPEGS +  RER+NHV F+ DG+WL+FTANL  + AEPV+ PNQFQPYGDLYVVK
Sbjct: 537 RILISGPEGSEEAARERVNHVSFNKDGDWLVFTANLCGITAEPVAMPNQFQPYGDLYVVK 596

Query: 587 LDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
           LDG+GLRRLTWNGYE+GTP WH  ++LDL ++ L    GDKL GQF+EPLWISCD 
Sbjct: 597 LDGTGLRRLTWNGYEDGTPTWHTADELDLSRMSLNGQDGDKLDGQFEEPLWISCDI 652

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234357|ref|NP_192096.1| tolB-related protein [Arabidopsis thaliana] gi|4558556|gb|AAD22649.1|AC007138_13 predicted protein of unknown function [Arabidopsis thaliana] gi|7268571|emb|CAB80680.1| predicted protein of unknown function [Arabidopsis thaliana] gi|29824389|gb|AAP04154.1| unknown protein [Arabidopsis thaliana] gi|110742479|dbj|BAE99158.1| hypothetical protein [Arabidopsis thaliana] gi|332656688|gb|AEE82088.1| tolB-related protein [Arabidopsis thaliana]

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/656 (67%), Positives = 525/656 (80%), Gaps = 23/656 (3%)

Query: 3   PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI 62
           PKGTI+FTTVGR +YGFDVFS+     N     E RLTDG S+NFNAQFV+ +   + F+
Sbjct: 4   PKGTIIFTTVGRTHYGFDVFSL-----NIATSVERRLTDGVSVNFNAQFVNDKSDDVVFV 58

Query: 63  SERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV-ARNNKLFFISAHEQPDQIFKSWSA 121
           SER+GS RIY+TR G SK E +P  P S FHDRP+  +NN+L+FISAHEQPD+ FK+WSA
Sbjct: 59  SERNGSARIYKTRSGISKPEQIPGAPESYFHDRPIITQNNRLYFISAHEQPDRYFKNWSA 118

Query: 122 LYSTDLKASK--FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
           LY+ +L ++K   TR+TP    D+SP+VS SG F+AVASY +R W GEFHE+NTDI VF+
Sbjct: 119 LYTVELNSAKREVTRVTPPDTADFSPAVSQSGDFLAVASYGTRSWGGEFHEINTDITVFK 178

Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL-EFLGFPIAPTRV 238
            S P  RV++CERGGWPTWSGDST++FH QADDGWWSIFRV  PEN  E+  FPI P RV
Sbjct: 179 ASKPETRVVICERGGWPTWSGDSTVFFHHQADDGWWSIFRVDIPENFTEYTDFPITPIRV 238

Query: 239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPF 288
           TP G+HCFTPAAF DGKR+A+ATRR+  N RHIEIYDL          +LNP+FHHYNPF
Sbjct: 239 TPSGLHCFTPAAFRDGKRIALATRRRGVNHRHIEIYDLENTTFQPVTESLNPSFHHYNPF 298

Query: 289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH 348
           VS +SEF+GYHRFRGEST+G+S +P++E + SP+K LR+LR+NGSFPS SP+G LI  N 
Sbjct: 299 VSPDSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIALNS 358

Query: 349 DFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV 408
           DF++N GIK++KSDGSKRWTLIKDRTAFYNSWSPTE+HVIYTS GPIF   R  VQIAR+
Sbjct: 359 DFDINGGIKVSKSDGSKRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFSPARIAVQIARI 418

Query: 409 SFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
            F  DPSD   ++E++PCDVKILT E TGNNAFPSCSPDGK +VFRSGRSGHKNL+++DA
Sbjct: 419 KF--DPSDLTADKEDLPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYIVDA 476

Query: 468 VNGEFNGD-IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
           VNGE NG  IR+LTDGPWIDTMP WSPKGDLI FSSNRHNP+N   F  YV++PDG+GLR
Sbjct: 477 VNGESNGGGIRRLTDGPWIDTMPCWSPKGDLIGFSSNRHNPENTAVFGAYVVRPDGTGLR 536

Query: 527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
           RI ++GPEGS +  RER+NHV F+ DG+WL+F ANL  V AEPV+ PNQFQPYGDLYVVK
Sbjct: 537 RIQISGPEGSEEAARERVNHVSFNKDGDWLVFAANLSGVTAEPVTMPNQFQPYGDLYVVK 596

Query: 587 LDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
           LDG+GLRRLTWNGYE+GTP WH  ++LDL +L L    GDKL GQF+EPLWISCD 
Sbjct: 597 LDGTGLRRLTWNGYEDGTPTWHTADELDLSQLNLNGQDGDKLEGQFEEPLWISCDI 652

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436369|ref|XP_004135965.1| PREDICTED: uncharacterized protein LOC101214858 [Cucumis sativus] gi|449488783|ref|XP_004158170.1| PREDICTED: uncharacterized protein LOC101226808 [Cucumis sativus]

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/653 (63%), Positives = 503/653 (77%), Gaps = 28/653 (4%)

Query: 3   PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI 62
           P G ++FTTVG   YGFD+FS+    +      E +LTDG S+NFNAQF++ Q  ++ FI
Sbjct: 4   PTGAVLFTTVGLNQYGFDIFSVPLNSLTV----ERQLTDGISVNFNAQFLNNQ-LSVVFI 58

Query: 63  SERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSAL 122
           SERSGS RIY +   +S  +LL S P S FHDRP+  N +L FISAHE P + F SW+AL
Sbjct: 59  SERSGSSRIYLSDSPNSSPKLLASAPGSCFHDRPIVTNGRLLFISAHENPHKPFTSWAAL 118

Query: 123 YSTDLKA-SKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES 181
           YST L      TRLTP G VD+SP+VS SGKF+AVASY SR W GEFHELN +IVVF+ S
Sbjct: 119 YSTPLDGHDSVTRLTPLGSVDFSPAVSESGKFVAVASYGSRSWGGEFHELNLEIVVFKSS 178

Query: 182 DPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPT--RVT 239
           DP +RV+V  RGGWP+WSGDST++FHR+ADDGWWSIF+V  PENL+     ++P   RVT
Sbjct: 179 DPGQRVVVAGRGGWPSWSGDSTVFFHRKADDGWWSIFKVEIPENLDSSRSSVSPVAIRVT 238

Query: 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD----------LTLNPNFHHYNPFV 289
           P G+HCFTPAA +DG+R+ VATRR +  +RHIEI+D            LNP FHHYNPFV
Sbjct: 239 PAGLHCFTPAAMNDGRRVVVATRRADSKYRHIEIFDSELEEFIPITQKLNPEFHHYNPFV 298

Query: 290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD 349
           S +S FIGYHRFRGEST+ +  IP+L PV SP+KEL+++R+NGSFP+ SPDG LI FN  
Sbjct: 299 SPDSNFIGYHRFRGESTQSE-LIPYLYPVISPIKELQIIRVNGSFPTPSPDGDLIAFNPG 357

Query: 350 FELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS 409
           F    G++I K DGSK  T++KDRTAF NSWSPTEK+VIYTS GPIF +  ATVQIAR++
Sbjct: 358 F---IGLQIVKFDGSKCRTVLKDRTAFCNSWSPTEKNVIYTSLGPIFGAVTATVQIARIT 414

Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
                SD     E+  +VKILTK+ TGNNAFP+CSPDGKFLVFRSGR+GHKNL+++DA+ 
Sbjct: 415 INSGDSD-----EVSNEVKILTKDNTGNNAFPACSPDGKFLVFRSGRTGHKNLYIVDAMK 469

Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
           GEF G++RQLTDGPWIDTMP+WSP+GDLI FSSN HNP N EAFS+YVI+PDGSGLRR++
Sbjct: 470 GEFEGELRQLTDGPWIDTMPNWSPRGDLIVFSSNMHNPKNTEAFSIYVIRPDGSGLRRVY 529

Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
           VAGPEGS +VDRERINHVCFS DG WLLFTANL  V AEPVS PNQFQPYGDL+VV+LDG
Sbjct: 530 VAGPEGSSEVDRERINHVCFSRDGNWLLFTANLSGVTAEPVSLPNQFQPYGDLFVVRLDG 589

Query: 590 SGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDD-IGDKLRGQFDEPLWISCD 641
           +GLRRLT N YENGTP W+ G++L L  L L+D+ +G+KL+G FDEPLWI  D
Sbjct: 590 TGLRRLTCNAYENGTPTWYYGSELALSGLSLKDEVVGEKLKGDFDEPLWIKFD 642

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521141|ref|XP_003529216.1| PREDICTED: uncharacterized protein LOC100814036 [Glycine max]

 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/665 (62%), Positives = 503/665 (75%), Gaps = 33/665 (4%)

Query: 1   MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAP--KFHEHRLTDGTSINFNAQFVDGQDQT 58
           + P GTIVF TVGR  YGFDVFS+       P     +HRLTDG SINFNAQF++ Q+  
Sbjct: 2   LPPAGTIVFNTVGRVQYGFDVFSVDLNHQQPPPHATADHRLTDGVSINFNAQFINPQND- 60

Query: 59  IAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKS 118
           + F+SER+GSPR Y T+P  +K + LP +P +LFHDRP+ +N KL+F+S HE+ D +F S
Sbjct: 61  VVFVSERTGSPRFYITKP-DTKPQPLPFLPNALFHDRPIVKNGKLYFVSTHEENDAVFTS 119

Query: 119 WSALYSTDLKASKFT--RLTPYGVVDYSPSVSYSGKFIAVASYESRPW-PGEFHELNTDI 175
           WSA+YST +  S  T  RLTP G VDYSP+VS +GKF+ VASY SR W   +F EL T+I
Sbjct: 120 WSAVYSTAIDDSTATVKRLTPRGEVDYSPAVSLTGKFLGVASYRSRRWQTNDFRELQTEI 179

Query: 176 VVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAP 235
           VVF ESDP  RV V ERGGWP+WS DSTI+FHR A+DGWWSIFRV   ++ E      +P
Sbjct: 180 VVFPESDPKNRVTVSERGGWPSWSQDSTIFFHRIAEDGWWSIFRVDLTDS-ELSESRNSP 238

Query: 236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT----------LNPNFHHY 285
            RVTPPG+HCFTPAAFHDGKR+AVATRR+  N RH+EI+DL           +NPNF+HY
Sbjct: 239 IRVTPPGLHCFTPAAFHDGKRVAVATRRRESNLRHVEIFDLESQTFQRITEDINPNFNHY 298

Query: 286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
           NPFVS +S  +GYHRFRGES +G+   PHL+ V SPV++L++LRLNGSFP+FSPDG  I 
Sbjct: 299 NPFVSLDSRHLGYHRFRGESIQGEPIYPHLDKVLSPVRDLQLLRLNGSFPTFSPDGDFIA 358

Query: 346 FNH--DFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATV 403
           FNH  D  +N G+KI KS+GSKRWTL+K RT F+N+WSPTEK+VIYTS GPIF+S   TV
Sbjct: 359 FNHGLDGNVNGGVKIVKSNGSKRWTLLKGRTCFHNAWSPTEKNVIYTSVGPIFESVYKTV 418

Query: 404 QIARVSFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL 462
           QIAR+ F  DP    N+REE+P  + ILT+E+TGNNAFPSCSPDGK +VFRSGR G+KNL
Sbjct: 419 QIARIEF--DPVHLTNDREEVPFKLTILTREDTGNNAFPSCSPDGKSIVFRSGREGYKNL 476

Query: 463 FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG 522
           +++DAV GEF+G IR+LT+G WIDTMP WSPKGDLIAFSSNRH+P N E F +Y++ P+G
Sbjct: 477 YIVDAVKGEFDGGIRRLTEGEWIDTMPCWSPKGDLIAFSSNRHDPKNSEVFGIYLVGPNG 536

Query: 523 SGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD 581
           SGLRR+ VA G EG     +ER+NHVCFS DGEWLLFTANLG V AEPV  PNQFQPYGD
Sbjct: 537 SGLRRVEVAKGVEGM----KERLNHVCFSRDGEWLLFTANLGGVSAEPVGLPNQFQPYGD 592

Query: 582 LYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIG----DKLRGQFDEPLW 637
           LYVV+LDGSGLRRLT N YENGTP WH G+ L L   R +D  G    DKL+G+F EPLW
Sbjct: 593 LYVVRLDGSGLRRLTCNAYENGTPTWHHGD-LALCAPREDDGEGGQDWDKLKGEFQEPLW 651

Query: 638 ISCDF 642
           I+CD 
Sbjct: 652 ITCDI 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358347278|ref|XP_003637686.1| Protein tolB [Medicago truncatula] gi|355503621|gb|AES84824.1| Protein tolB [Medicago truncatula]

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/659 (61%), Positives = 496/659 (75%), Gaps = 31/659 (4%)

Query: 3   PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFH-EHRLTDGTSINFNAQFVDGQDQTIAF 61
           P GTIVF TVGR  YGFDVF     + +    H +HRLTDG S+NFNAQF +   QTI F
Sbjct: 4   PSGTIVFNTVGRTQYGFDVF-----YTHLNNNHNDHRLTDGISVNFNAQFTNDH-QTIVF 57

Query: 62  ISERSGSPRIYQTRPGSSKTELLPSIPC-SLFHDRPVARNNKLFFISAHEQPDQIFKSWS 120
           +SER+GSPR Y TR  +    LLPS+P  +LF D P+ +N+K++F S H+QP+ +FKS S
Sbjct: 58  VSERTGSPRFYLTRSENKPELLLPSLPNNTLFQDCPIIKNSKIYFSSTHDQPNALFKSAS 117

Query: 121 ALYSTDLKAS-KFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
           A+YST +  +   TRLTP+GVVDYSP+VS +G  IAVASY SR W G+F EL TDIVVF+
Sbjct: 118 AVYSTAVDGTGTLTRLTPHGVVDYSPAVSLTGNLIAVASYGSRNWDGDFRELKTDIVVFE 177

Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT 239
           ES P  RV+V ERGGWPTW GDST++FHR ADDGWWSIFR    ++    G   +P R+T
Sbjct: 178 ESVPENRVVVAERGGWPTWLGDSTVFFHRIADDGWWSIFRADLKDS-NLTGIQSSPIRIT 236

Query: 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPFV 289
           PPG+HCFTPAA  +  R+AVATRRK  ++RHIEI+DL          ++NP+FHHYNPFV
Sbjct: 237 PPGLHCFTPAAIQNSNRIAVATRRKESDYRHIEIFDLETKTFQKITYSVNPDFHHYNPFV 296

Query: 290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD 349
           S +S +IGYHRFRGES +G+ST PHL+ V SPV ++R+LRLNGSFPSFSPDG  I FNH+
Sbjct: 297 SPDSCYIGYHRFRGESVQGESTYPHLDQVKSPVDDIRLLRLNGSFPSFSPDGDFIAFNHE 356

Query: 350 FE--LNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407
            +  LN G+KI +S+GSKRW+L+K RT F NSWSPTEK+VIYTS GPIF+S   TVQIAR
Sbjct: 357 LDGNLNGGVKIIRSNGSKRWSLLKGRTCFGNSWSPTEKNVIYTSIGPIFESVTKTVQIAR 416

Query: 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
           + F+ D     +REEIP  +KILTK ++GNNAFPSCSPDGKF+VFRSGR+G KNL+++DA
Sbjct: 417 IEFEPDHL-SKDREEIPFTLKILTKYDSGNNAFPSCSPDGKFIVFRSGRTGFKNLYIVDA 475

Query: 468 VNG-EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR 526
           VNG E +G +R+LT+G WIDTMP WSPKGDLIAFSSNRH+  N E F +YV+  DGSG+R
Sbjct: 476 VNGEEVDGGLRRLTEGEWIDTMPCWSPKGDLIAFSSNRHDAKNSEVFGIYVVNVDGSGVR 535

Query: 527 RIHVAGPEGSG-DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV 585
           R+ +    G G D +RER+NHVCFS DGEWLLFTANLG V AEPV  PNQFQPYGDL+VV
Sbjct: 536 RVEI----GKGVDGERERLNHVCFSGDGEWLLFTANLGGVSAEPVGLPNQFQPYGDLFVV 591

Query: 586 KLDGSGLRRLTWNGYENGTPAWHPGNQL--DLGKLRLEDDIGDKLRGQFDEPLWISCDF 642
           KLDGSGLRRLT N YENGTP WH G  L  + G    ++   DKL+G F EPLWI+CD 
Sbjct: 592 KLDGSGLRRLTCNAYENGTPTWHHGELLLCNDGDEDGDNGDWDKLKGAFQEPLWITCDI 650

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358347274|ref|XP_003637684.1| Protein tolB [Medicago truncatula] gi|355503619|gb|AES84822.1| Protein tolB [Medicago truncatula]

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/660 (60%), Positives = 494/660 (74%), Gaps = 33/660 (5%)

Query: 3   PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI 62
           P GTIVF+T+GR  YGFDVF      +     H+H LTDG SINFNAQF D   +TI F+
Sbjct: 4   PIGTIVFSTIGRAQYGFDVFYTN---LKNHSNHDHCLTDGISINFNAQFTDDDQKTIVFV 60

Query: 63  SERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSAL 122
           SER+GSPR Y ++ G+ + ELLPS   ++F DRP  RN KL+F+S HEQP+++FKSW+A+
Sbjct: 61  SERTGSPRFYLSKLGN-EPELLPSPLNAVFLDRPTIRNGKLYFVSTHEQPNELFKSWTAV 119

Query: 123 YSTDLKA---SKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQ 179
           YST + +   S FTRLTPYGVVDYSP+VS +G  IAVASY +R W GE  EL T+IVVF+
Sbjct: 120 YSTAINSAGTSTFTRLTPYGVVDYSPAVSLTGSLIAVASYGTRRWNGEIRELETEIVVFE 179

Query: 180 ESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT 239
           ES P  RV+V ERGGWPTW GDST++FH+ A+DGWWSIFR+  P+     GFP+   RVT
Sbjct: 180 ESVPENRVVVSERGGWPTWLGDSTLFFHKIAEDGWWSIFRIDLPDT-NLNGFPVPSVRVT 238

Query: 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPFV 289
           PPG+HCFTP A HDG  +A+ATRR+  +FRHIEI++L          T+NPNFHHYNPF+
Sbjct: 239 PPGLHCFTPVAMHDGNHIALATRRRESDFRHIEIFNLETQTFQKITETINPNFHHYNPFI 298

Query: 290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD 349
           S +S ++GYHRFRGES++G+ST PHL+PV S    +++LRLNGSFPSFSP+G  I FNH 
Sbjct: 299 SRDSCYLGYHRFRGESSQGESTYPHLDPVKSLDPNIQLLRLNGSFPSFSPNGDFIAFNHG 358

Query: 350 FEL--NAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407
           F++  N+G+KI KS+GSKRW LIK R  F ++WS TEK++IYT+ GPIFQ    TVQIAR
Sbjct: 359 FDVRNNSGVKIIKSNGSKRWNLIKGRMCFGHAWSATEKNIIYTTIGPIFQLVSKTVQIAR 418

Query: 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA 467
           + F       N++EEIP  +KILTK+++GNNAFPSCSPDGKF+VFRSGRSG KNL+++DA
Sbjct: 419 IEFD-SVHLTNDQEEIPYTLKILTKDDSGNNAFPSCSPDGKFVVFRSGRSGFKNLYIVDA 477

Query: 468 VNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR 527
           VNGEF+G +R+LT+G WIDTMP WSPKGDLIAFSSNRH+  N +AF +YV++ DGSGLRR
Sbjct: 478 VNGEFDGGLRRLTEGEWIDTMPCWSPKGDLIAFSSNRHDGGNSQAFGIYVVRVDGSGLRR 537

Query: 528 IHVAGPEGSG-DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVK 586
           + V    G G D +RE +NHV FS DGEWLLFT NL  + AEP S PNQ+QPYGDL+VVK
Sbjct: 538 VEV----GKGVDGEREMLNHVRFSGDGEWLLFTGNLVGLTAEPASIPNQYQPYGDLFVVK 593

Query: 587 LDGSGLRRLTWNGYENGTPAWHPGNQL-------DLGKLRLEDDIGDKLRGQFDEPLWIS 639
           LDGSGLRRLT N YENGTPAWH G+ L       D      +    DKL+G F+E LWI+
Sbjct: 594 LDGSGLRRLTCNAYENGTPAWHYGDLLLSNDDDDDDDDDDGDACDWDKLKGAFEESLWIT 653

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	642
TAIR|locus:2141405	652	AT4G01870 "AT4G01870" [Arabido	0.987	0.972	0.673	3.8e-252
TAIR|locus:2036916	706	AT1G21680 "AT1G21680" [Arabido	0.795	0.723	0.434	3.1e-115
TAIR|locus:2036982	703	AT1G21670 [Arabidopsis thalian	0.830	0.758	0.379	2.7e-109
ASPGD|ASPL0000037579	679	AN2818 [Emericella nidulans (t	0.331	0.313	0.265	2.3e-10
TIGR_CMR|CBU_0090	437	CBU_0090 "tolB protein" [Coxie	0.475	0.697	0.228	3.7e-07
TIGR_CMR|SPO_3109	439	SPO_3109 "tolB protein, putati	0.194	0.284	0.304	5.4e-07
UNIPROTKB|Q74H67	432	tolB "Protein TolB" [Geobacter	0.302	0.449	0.281	2.7e-06
TIGR_CMR|GSU_0025	432	GSU_0025 "tolB protein" [Geoba	0.302	0.449	0.281	2.7e-06
UNIPROTKB|P0A855	430	tolB [Escherichia coli K-12 (t	0.168	0.251	0.322	7.5e-06
TIGR_CMR|CPS_1731	449	CPS_1731 "tolB protein" [Colwe	0.222	0.318	0.277	7.8e-05

TAIR|locus:2141405 AT4G01870 "AT4G01870" [Arabidopsis thaliana (taxid:3702)]

 Score = 2428 (859.8 bits), Expect = 3.8e-252, P = 3.8e-252
 Identities = 443/658 (67%), Positives = 527/658 (80%)

Query:     1 ME-PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTI 59
             ME PKGTI+FTTVGR +YGFDVFS+     N     E RLTDG S+NFNAQFV+ +   +
Sbjct:     1 METPKGTIIFTTVGRTHYGFDVFSL-----NIATSVERRLTDGVSVNFNAQFVNDKSDDV 55

Query:    60 AFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV-ARNNKLFFISAHEQPDQIFKS 118
              F+SER+GS RIY+TR G SK E +P  P S FHDRP+  +NN+L+FISAHEQPD+ FK+
Sbjct:    56 VFVSERNGSARIYKTRSGISKPEQIPGAPESYFHDRPIITQNNRLYFISAHEQPDRYFKN 115

Query:   119 WSALYSTDLKASK--FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIV 176
             WSALY+ +L ++K   TR+TP    D+SP+VS SG F+AVASY +R W GEFHE+NTDI 
Sbjct:   116 WSALYTVELNSAKREVTRVTPPDTADFSPAVSQSGDFLAVASYGTRSWGGEFHEINTDIT 175

Query:   177 VFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL-EFLGFPIAP 235
             VF+ S P  RV++CERGGWPTWSGDST++FH QADDGWWSIFRV  PEN  E+  FPI P
Sbjct:   176 VFKASKPETRVVICERGGWPTWSGDSTVFFHHQADDGWWSIFRVDIPENFTEYTDFPITP 235

Query:   236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHY 285
              RVTP G+HCFTPAAF DGKR+A+ATRR+  N RHIEIYDL          +LNP+FHHY
Sbjct:   236 IRVTPSGLHCFTPAAFRDGKRIALATRRRGVNHRHIEIYDLENTTFQPVTESLNPSFHHY 295

Query:   286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV 345
             NPFVS +SEF+GYHRFRGEST+G+S +P++E + SP+K LR+LR+NGSFPS SP+G LI 
Sbjct:   296 NPFVSPDSEFLGYHRFRGESTQGESIVPNIESIVSPIKTLRLLRINGSFPSSSPNGDLIA 355

Query:   346 FNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI 405
              N DF++N GIK++KSDGSKRWTLIKDRTAFYNSWSPTE+HVIYTS GPIF   R  VQI
Sbjct:   356 LNSDFDINGGIKVSKSDGSKRWTLIKDRTAFYNSWSPTERHVIYTSLGPIFSPARIAVQI 415

Query:   406 ARVSFQLDPSD-DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV 464
             AR+ F  DPSD   ++E++PCDVKILT E TGNNAFPSCSPDGK +VFRSGRSGHKNL++
Sbjct:   416 ARIKF--DPSDLTADKEDLPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRSGHKNLYI 473

Query:   465 LDAVNGEFNGD-IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523
             +DAVNGE NG  IR+LTDGPWIDTMP WSPKGDLI FSSNRHNP+N   F  YV++PDG+
Sbjct:   474 VDAVNGESNGGGIRRLTDGPWIDTMPCWSPKGDLIGFSSNRHNPENTAVFGAYVVRPDGT 533

Query:   524 GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY 583
             GLRRI ++GPEGS +  RER+NHV F+ DG+WL+F ANL  V AEPV+ PNQFQPYGDLY
Sbjct:   534 GLRRIQISGPEGSEEAARERVNHVSFNKDGDWLVFAANLSGVTAEPVTMPNQFQPYGDLY 593

Query:   584 VVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEPLWISCD 641
             VVKLDG+GLRRLTWNGYE+GTP WH  ++LDL +L L    GDKL GQF+EPLWISCD
Sbjct:   594 VVKLDGTGLRRLTWNGYEDGTPTWHTADELDLSQLNLNGQDGDKLEGQFEEPLWISCD 651

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2036916 AT1G21680 "AT1G21680" [Arabidopsis thaliana (taxid:3702)]

 Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
 Identities = 237/546 (43%), Positives = 336/546 (61%)

Query:    76 PGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRL 135
             P  S+ + L  +  + F D+P      + ++S HE   +   SW+A+YST+LK     RL
Sbjct:   145 PLLSRFDHLSGMTVNSFKDKPSLSGEFIVYVSTHESSGEPRASWTAVYSTELKTGLTRRL 204

Query:   136 TPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGW 195
             TP GV D+SP+VS SG   AVASY  R W GE  EL TDI VF   D + RV V E GGW
Sbjct:   205 TPSGVADFSPAVSPSGNLTAVASYGERGWTGEVEELRTDIYVFLTRDGSHRVKVVEHGGW 264

Query:   196 PTWSGDSTIYFHRQAD-DGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDG 254
             P W  +ST+YFHR+++ DGW S++R   PEN       +   RVTPPGVH FTPA   + 
Sbjct:   265 PCWVDESTLYFHRRSEEDGWISVYRAILPENGPLTTESVTIQRVTPPGVHAFTPATSPNN 324

Query:   255 KR-LAVATRRKNRNFRHIEIYDLTLN----------PNFHHYNPFVSANSEFIGYHRFRG 303
                +AVATRR   ++RH+E++DL  N          P  HH NPF+S +S  +GYH  RG
Sbjct:   325 HEFVAVATRRPGSDYRHVELFDLKRNEFIELTRLVAPKSHHLNPFLSPDSSRVGYHSCRG 384

Query:   304 ESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG 363
             ++   +S +  LE + +  ++L + R++GSFPSFSP G  I +    ++  G+ + K DG
Sbjct:   385 DANGRRSPLLFLENIQTTTRDLSLFRIDGSFPSFSPGGDRIAY---VKM-PGVFVVKPDG 440

Query:   364 SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI 423
             S +  + K   AF  +W P    ++Y+S+GP F +ER  V +  +S  +D +D ++    
Sbjct:   441 SGQREVYKGM-AFSTAWDPVRPGIVYSSSGPTFATERTEVDV--ISIDVDAADKSS---- 493

Query:   424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP 483
                V+ LT     NNAFP  SPDGK +VFRSGR+GHKNL+++DA  GE +G + +LT+G 
Sbjct:   494 --SVRRLTTNGK-NNAFPWPSPDGKRIVFRSGRTGHKNLYIMDAEKGE-SGGLWRLTEGA 549

Query:   484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER 543
             W DTM +WSP G+ IAF+S+R +P +  +F L++I P+G+GLR++  +G  G       R
Sbjct:   550 WTDTMCNWSPDGEWIAFASDRESPGS-GSFELFLIHPNGTGLRKLIQSGTGG-------R 601

Query:   544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENG 603
              NH  FS D + L+FT++   + AEP+S P+ +QPYGD++ VKLDGS +RRLT N YE+G
Sbjct:   602 TNHPIFSPDSKSLVFTSDYAGISAEPISNPHHYQPYGDIFTVKLDGSNVRRLTHNSYEDG 661

Query:   604 TPAWHP 609
             TPAW P
Sbjct:   662 TPAWAP 667

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2036982 AT1G21670 [Arabidopsis thaliana (taxid:3702)]

 Score = 962 (343.7 bits), Expect = 2.7e-109, Sum P(2) = 2.7e-109
 Identities = 222/585 (37%), Positives = 322/585 (55%)

Query:    52 VDGQDQTIAFISERSGSPR-----IYQTRPGS-------SKTELLPSIPCSLFHDRPVAR 99
             +  QD  + +++ER+G+P      ++    GS       S  E    +  +   D PV  
Sbjct:    95 IQPQDVHLIYVTERAGTPSLNYDVVHSDNVGSRIQVPLFSGEEQQSGMNVNSMKDTPVLT 154

Query:   100 NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASY 159
             N  L  +S HE P +   SW+A+YST+L+     RLTP G+ D+SP+VS SGK+ AVAS+
Sbjct:   155 NGYLVHVSTHENPGKPMASWAAVYSTELRTKSTRRLTPLGIADFSPAVSPSGKWTAVASF 214

Query:   160 ESRPWPGEF--HELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSI 217
               + W       E+++D+ VF   D  +RV V E+GGWP W  DST+YFHR++DDGW S+
Sbjct:   215 GEKGWTWSMVEKEISSDVYVFLTQDGTQRVKVVEQGGWPRWVDDSTLYFHRKSDDGWISV 274

Query:   218 FRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKR-LAVATRRKNRNFRHIEIYDL 276
             +R   P+        +   RVTPPG+H FTPA   +    +AVATRR     RH+E++DL
Sbjct:   275 YRAILPKTGPVTTKSVTIQRVTPPGLHAFTPATSPNNNNFIAVATRRPGSEIRHVELFDL 334

Query:   277 TLN----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL-EPVASPVKEL 325
               N          P  HH+NPF+S +S  +GYH  RG++T G+ T  +L + + +   +L
Sbjct:   335 KKNEFVELTRLVSPKSHHFNPFLSPDSSRVGYHSCRGDAT-GRKTPRNLLQSLKTTSNDL 393

Query:   326 RMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEK 385
              + R +G+FPS SP+G    F   F    G+ +   DGS    L+  +  F   W P   
Sbjct:   394 SLFRFDGAFPSISPEGDRFAFV-SF---TGVFVVNPDGSGLRQLLP-QMGFGTVWDPIRH 448

Query:   386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSCS 444
              ++YTS+GP     ++ + I  ++    PS           VK LT   TG NNAFP  S
Sbjct:   449 GIVYTSSGPALAPGKSQIDILAINVDA-PSPATA-------VKKLTT--TGENNAFPWPS 498

Query:   445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
             PDGK +VFRS RSG KNL+++DA  GE +G + +LT+G W DT+ +WSP G+ I F+SNR
Sbjct:   499 PDGKRIVFRSARSGTKNLYIMDAEKGE-SGGLFRLTNGNWNDTIATWSPDGNWIVFASNR 557

Query:   505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA 564
               P  +   ++YV+ PDG+GLR++       +G V      H  FS D + ++FT     
Sbjct:   558 EFPGTL-LMNIYVVHPDGTGLRKL---AQNLTGLVSM----HPMFSPDSKRIVFTTIYAG 609

Query:   565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
             + AE +  P+   P  +++ V LDGSGL RLT N  E+G P W P
Sbjct:   610 ISAEQIGNPHFNVPSSEIFTVNLDGSGLTRLTHNSVEDGPPMWFP 654

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

ASPGD|ASPL0000037579 AN2818 [Emericella nidulans (taxid:162425)]

 Score = 153 (58.9 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 64/241 (26%), Positives = 105/241 (43%)

Query:   375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQ-IARVSFQLDPSDDNNREEIPCDVKILTKE 433
             AF  SWSP  + +++   G  FQS  +T   + R +     ++ +  E +      +   
Sbjct:   457 AFQPSWSPDGEWLVF-GEGAWFQSRASTGGWLVRAT-----ANGSEYEVLTASNTSIANT 510

Query:   434 ETGNNAFPSCSPDGKFLVFR--SGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPS 490
                N+ FPS S DG  +VFR     S + +   L     + N  +I  LT+  W D +P 
Sbjct:   511 SIMNSGFPSYSHDGSKIVFRVWGANSTNGDTGQLGLRVMDLNTRNITALTN-EW-DNLPF 568

Query:   491 WSPKG--DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
             +SP G  + I F+        V  + +  IKPDG+ L    V    G  D       H  
Sbjct:   569 FSPAGFEERIVFTRKT----GVYNYDVCTIKPDGTDLE---VLTSSGGNDA------HAV 615

Query:   549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH 608
             +S DG  ++++  +     E   + + FQPYG + ++  DG   + LT + +E+  P   
Sbjct:   616 WSYDGR-IMYSTGMFGFQYECALYDDTFQPYGQVMIMDADGGNKQVLTDSIWEDSMPLLV 674

Query:   609 P 609
             P
Sbjct:   675 P 675

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TIGR_CMR|CBU_0090 CBU_0090 "tolB protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 149 (57.5 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 81/354 (22%), Positives = 140/354 (39%)

Query:   278 LNP-NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPS 336
             +NP     Y    +  + F   +R   ES    +    L  +A  + +L   +L G    
Sbjct:   107 INPLGMRRYRVAFTLINVFDSNNRLLSESFNVNAK--ELRNLAHHISDLIYQKLTGVRGV 164

Query:   337 FSPDGGLIVFNHDFELNAG---IKIAKSDG-SKRWTLIKDRTAFYNSWSPTEKHVIYTST 392
             FS     ++     E  A    +++A +DG + +  L+ D      +WSP    + Y S 
Sbjct:   165 FSTKIAYVLVQASSENTAAKYTLEVADADGFNPQPLLVSDMPIMSPTWSPDGNKIAYVS- 223

Query:   393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
                F+  RA + +  ++          R+ +         E  G N  P+ SPDGK L  
Sbjct:   224 ---FEGHRAAIYLQDLA-------TGRRQRL--------SEAPGINGAPAFSPDGKQLAL 265

Query:   453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
                ++G+  +++L+  +G     +R++T G  IDT P+WSP G  + F+SNR     +  
Sbjct:   266 VLTKTGNPKIYILNLADGH----LREITKGWSIDTEPAWSPDGKSLLFTSNRDGTPQIYN 321

Query:   513 FSLYVIKPDGSGLRRIHVAGP----EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE 568
             +S      +    R  + A P    +G   +   R N +   A  +  L T  +  +   
Sbjct:   322 YSFADGSINRVTYRGDYNARPSFMPDGKSIIMMHRENGLFGIARQD--LSTGQVQILSES 379

Query:   569 PVSWPNQFQPYGDL--YVVKLDGSG-LRRLTWNGY-------ENGT---PAWHP 609
                      P G +  Y ++  G G L +++ +G         NG    PAW P
Sbjct:   380 GTDESPSLAPNGKMAIYAMEYGGRGVLAQVSIDGQIKLRLPARNGNVQEPAWSP 433

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0019534 "toxin transporter activity" evidence=ISS

TIGR_CMR|SPO_3109 SPO_3109 "tolB protein, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 131 (51.2 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
 Identities = 42/138 (30%), Positives = 62/138 (44%)

Query:   441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
             PS +PDG  +VF S RSG   L+V+ A  GE      +++ G      P WSP+GDLIAF
Sbjct:   299 PSYAPDGSRIVFESDRSGTPQLYVMSAAGGEAT----RISFGQGRYGTPVWSPRGDLIAF 354

Query:   501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWL 556
             +           F + V++ DGS  R +  +    GP  S +            A G   
Sbjct:   355 TKQSKG-----RFHIGVMRADGSEERLLTASFLDEGPTWSPNGRVIMFTRETQGASGRAA 409

Query:   557 LFTANLGAVMAEPVSWPN 574
             L++ ++      PV  P+
Sbjct:   410 LYSVDISGRNLRPVRTPD 427

GO:0006810 "transport" evidence=ISS

GO:0019534 "toxin transporter activity" evidence=ISS

UNIPROTKB|Q74H67 tolB "Protein TolB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 141 (54.7 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 64/227 (28%), Positives = 100/227 (44%)

Query:   404 QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLF 463
             ++A  S++   + D  R EI    + +     G N   + SPDGK L     R G+  ++
Sbjct:   216 ELAYTSYRRG-NPDLFRREIFTGTEAVVSSHRGINVTGTWSPDGKQLALAMSRDGNSEIY 274

Query:   464 VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523
              +   +G    D R+LT    ID  P+WSP G  IAF S+R     V     +++  DGS
Sbjct:   275 AISR-DGR---DPRRLTTHQAIDVSPAWSPDGKRIAFVSDRLGKPQV-----FIMNADGS 325

Query:   524 GLRRIHVAG-----PEGS--GD---VDRERINHVCFS--ADGEWLLFTANLGAVMAEPVS 571
              +RR+  +G     P  S  GD     R+      +S   DG       + G+   E   
Sbjct:   326 DVRRLTTSGAYNVSPRWSPKGDRLVYCRQEGGFQIYSIATDGTGDTRLTSEGS--NEHPR 383

Query:   572 W-PN-QFQPY------GD-LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
             W P+ +F  +      G+ +YV++ DGSG  R+  +  +   P W P
Sbjct:   384 WSPDGRFLTFSSTRDGGEAIYVMRSDGSGQTRVYRSKGKASHPTWSP 430

GO:0006810 "transport" evidence=ISS

GO:0019534 "toxin transporter activity" evidence=ISS

TIGR_CMR|GSU_0025 GSU_0025 "tolB protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 141 (54.7 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 64/227 (28%), Positives = 100/227 (44%)

Query:   404 QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLF 463
             ++A  S++   + D  R EI    + +     G N   + SPDGK L     R G+  ++
Sbjct:   216 ELAYTSYRRG-NPDLFRREIFTGTEAVVSSHRGINVTGTWSPDGKQLALAMSRDGNSEIY 274

Query:   464 VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS 523
              +   +G    D R+LT    ID  P+WSP G  IAF S+R     V     +++  DGS
Sbjct:   275 AISR-DGR---DPRRLTTHQAIDVSPAWSPDGKRIAFVSDRLGKPQV-----FIMNADGS 325

Query:   524 GLRRIHVAG-----PEGS--GD---VDRERINHVCFS--ADGEWLLFTANLGAVMAEPVS 571
              +RR+  +G     P  S  GD     R+      +S   DG       + G+   E   
Sbjct:   326 DVRRLTTSGAYNVSPRWSPKGDRLVYCRQEGGFQIYSIATDGTGDTRLTSEGS--NEHPR 383

Query:   572 W-PN-QFQPY------GD-LYVVKLDGSGLRRLTWNGYENGTPAWHP 609
             W P+ +F  +      G+ +YV++ DGSG  R+  +  +   P W P
Sbjct:   384 WSPDGRFLTFSSTRDGGEAIYVMRSDGSGQTRVYRSKGKASHPTWSP 430

GO:0006810 "transport" evidence=ISS

GO:0019534 "toxin transporter activity" evidence=ISS

UNIPROTKB|P0A855 tolB [Escherichia coli K-12 (taxid:83333)]

 Score = 137 (53.3 bits), Expect = 7.5e-06, P = 7.5e-06
 Identities = 38/118 (32%), Positives = 60/118 (50%)

Query:   437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
             +N  P+ SPDG  L F   ++G  NL+V+D  +G+    IRQ+TDG   +T P+W P   
Sbjct:   245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300

Query:   497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
              +AF+S++     V     Y +  +G   +RI   G +    DV  +    V  S++G
Sbjct:   301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG 353

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043213 "bacteriocin transport" evidence=IEA;IMP

GO:0017038 "protein import" evidence=IEA;IMP

GO:0015031 "protein transport" evidence=IMP

GO:0042597 "periplasmic space" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

TIGR_CMR|CPS_1731 CPS_1731 "tolB protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 128 (50.1 bits), Expect = 7.8e-05, P = 7.8e-05
 Identities = 43/155 (27%), Positives = 72/155 (46%)

Query:   385 KHVIYTSTGPIFQSERATV--QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS 442
             +HV+ +S  P+          Q+A VSF+   +  ++ + I   V+       G N+ P 
Sbjct:   211 EHVLLSSKEPLMSPSWHPNGDQLAYVSFENRQAQIHSID-IYTGVRKSISSFNGINSAPR 269

Query:   443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
              SPDGK +     + G+ +L+V++    +    +R++T    IDT PSW+P G+ + FSS
Sbjct:   270 FSPDGKSMAMVLSKDGNPDLYVMELATMK----LRRITRNRAIDTEPSWTPDGNSLIFSS 325

Query:   503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG 537
              R          LY +   G  +RR+   G    G
Sbjct:   326 ERGGKPQ-----LYRVDLAGGKVRRLTFDGEVNLG 355

GO:0042891 "antibiotic transport" evidence=ISS

GO:0042895 "antibiotic transporter activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	642
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	2e-16
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	2e-16
PRK05137	435	PRK05137, tolB, translocation protein TolB; Provis	3e-14
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	6e-14
PRK05137	435	PRK05137, tolB, translocation protein TolB; Provis	2e-13
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	8e-12
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	9e-12
PRK04922	433	PRK04922, tolB, translocation protein TolB; Provis	2e-11
PRK02889	427	PRK02889, tolB, translocation protein TolB; Provis	3e-11
PRK00178	430	PRK00178, tolB, translocation protein TolB; Provis	9e-10
PRK01742	429	PRK01742, tolB, translocation protein TolB; Provis	1e-09
PRK04922	433	PRK04922, tolB, translocation protein TolB; Provis	7e-09
PRK03629	429	PRK03629, tolB, translocation protein TolB; Provis	1e-08
PRK02889	427	PRK02889, tolB, translocation protein TolB; Provis	3e-08
PRK04922	433	PRK04922, tolB, translocation protein TolB; Provis	2e-07
PRK04792	448	PRK04792, tolB, translocation protein TolB; Provis	1e-06
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	3e-06
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	3e-06
pfam07676	37	pfam07676, PD40, WD40-like Beta Propeller Repeat	9e-06
PRK04792	448	PRK04792, tolB, translocation protein TolB; Provis	2e-05
PRK02889	427	PRK02889, tolB, translocation protein TolB; Provis	1e-04
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	2e-04
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	3e-04
PRK04043	419	PRK04043, tolB, translocation protein TolB; Provis	3e-04
TIGR02800	417	TIGR02800, propeller_TolB, tol-pal system beta pro	7e-04
PRK03629	429	PRK03629, tolB, translocation protein TolB; Provis	7e-04
pfam00930	348	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP I	7e-04
COG0823	425	COG0823, TolB, Periplasmic component of the Tol bi	0.001
PRK00178	430	PRK00178, tolB, translocation protein TolB; Provis	0.001
PRK03629	429	PRK03629, tolB, translocation protein TolB; Provis	0.001
PRK01742	429	PRK01742, tolB, translocation protein TolB; Provis	0.003
PRK01029	428	PRK01029, tolB, translocation protein TolB; Provis	0.004

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 81.9 bits (203), Expect = 2e-16
 Identities = 66/289 (22%), Positives = 100/289 (34%), Gaps = 81/289 (28%)

Query: 334 FPSFSPDGGLI-----------VFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSP 382
            P++SPDG  +           ++  D       K+A   G               ++SP
Sbjct: 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG----------MNGAPAFSP 243

Query: 383 TEKHVIYTSTGP----IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
               +  + +      I+  +    Q+ R++        N                 G +
Sbjct: 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT--------NGP---------------GID 280

Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
             PS SPDGK + F S R G   ++++DA  GE     R+LT     +  PSWSP GDLI
Sbjct: 281 TEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----ARRLTFRGNYNASPSWSPDGDLI 336

Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
           AF            F++ V+  DG G R +   G                F+ +G  +L+
Sbjct: 337 AFVHREGG-----GFNIAVMDLDGGGERVLTDTG----------LDESPSFAPNGRMILY 381

Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
               G                G L +V  DG    RL     +   PAW
Sbjct: 382 ATTRGG--------------RGVLGLVSTDGRFRARLPLGQGDVREPAW 416

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 81.5 bits (202), Expect = 2e-16
 Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 63/263 (23%)

Query: 356 IKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGP----IFQSERATVQIARV-S 409
           +++A  DG+   T+ +        +WSP  + + Y S       I+  + AT Q  +V S
Sbjct: 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS 231

Query: 410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
           F                         G N  P+ SPDG  L     + G+ +++V+D   
Sbjct: 232 FP------------------------GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267

Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
                 + +LT+GP IDT PSWSP G  IAF+S+R     +     Y++  DG   RR+ 
Sbjct: 268 K----QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQI-----YMMDADGGEARRLT 318

Query: 530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG 589
             G   +            +S DG+ + F    G            F     + V+ LDG
Sbjct: 319 FRGNYNASPS---------WSPDGDLIAFVHREG----------GGFN----IAVMDLDG 355

Query: 590 SGLRRLTWNGYENGTPAWHPGNQ 612
            G R LT  G  + +P++ P  +
Sbjct: 356 GGERVLTDTGL-DESPSFAPNGR 377

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|235351 PRK05137, tolB, translocation protein TolB; Provisional

 Score = 74.6 bits (184), Expect = 3e-14
 Identities = 58/173 (33%), Positives = 79/173 (45%), Gaps = 41/173 (23%)

Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
           P  SPDG+ +V    + G+ +++ +D  +G       +LTD P IDT PS+SP G  I F
Sbjct: 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT----TTRLTDSPAIDTSPSYSPDGSQIVF 306

Query: 501 SSNRHNPDNVEAFS----LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
            S+R         S    LYV+  DGS  RRI      G G     R +   +S  G+ +
Sbjct: 307 ESDR---------SGSPQLYVMNADGSNPRRISF----GGG-----RYSTPVWSPRGDLI 348

Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
            FT   G           QF     + V+K DGSG R LT +G+    P W P
Sbjct: 349 AFTKQGG----------GQFS----IGVMKPDGSGERILT-SGFLVEGPTWAP 386

Length = 435

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 74.0 bits (182), Expect = 6e-14
 Identities = 61/233 (26%), Positives = 90/233 (38%), Gaps = 56/233 (24%)

Query: 380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA 439
           WSP  K + Y S            +I  +                    IL     GNN 
Sbjct: 200 WSPDGKKLAYVS-----FELGGCPRIYYLD-----------LNTGKRPVILNFN--GNNG 241

Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
            P+ SPDG  L F S R G  +++++D           +LT+G  I+T PSWSP G  I 
Sbjct: 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL----PRLTNGFGINTSPSWSPDGSKIV 297

Query: 500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT 559
           F+S+R     +     Y+   +GS + R+  +G   S  V          S DG+ ++F 
Sbjct: 298 FTSDRGGRPQI-----YLYDLEGSQVTRLTFSGGGNSNPVW---------SPDGDKIVFE 343

Query: 560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLD---GSGLRRLTWNGYENGTPAWHP 609
           +                   G   + K D   G  +R LT + Y N +P+W P
Sbjct: 344 S----------------SSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAP 379

Length = 425

>gnl|CDD|235351 PRK05137, tolB, translocation protein TolB; Provisional

 Score = 72.6 bits (179), Expect = 2e-13
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 33/126 (26%)

Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
           PS SPDG  +VF S RSG   L+V++A +G    + R+++ G    + P WSP+GDLIAF
Sbjct: 295 PSYSPDGSQIVFESDRSGSPQLYVMNA-DG---SNPRRISFGGGRYSTPVWSPRGDLIAF 350

Query: 501 ---SSNRHNPDNVEAFSLYVIKPDGSGLRRI----HVAGPEGSGDVDRERINHVCFSADG 553
                 +        FS+ V+KPDGSG R +     V GP               ++ +G
Sbjct: 351 TKQGGGQ--------FSIGVMKPDGSGERILTSGFLVEGP--------------TWAPNG 388

Query: 554 EWLLFT 559
             ++F 
Sbjct: 389 RVIMFF 394

Length = 435

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 67.3 bits (165), Expect = 8e-12
 Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 44/185 (23%)

Query: 330 LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-----SWSPTE 384
           +NG+ P+FSPDG  +  +   + N  I +   DG +   L    T         SWSP  
Sbjct: 235 MNGA-PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL----TNGPGIDTEPSWSPDG 289

Query: 385 KHVIYTST---GP-IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NA 439
           K + +TS     P I+  +    +  R++F                         GN NA
Sbjct: 290 KSIAFTSDRGGSPQIYMMDADGGEARRLTF------------------------RGNYNA 325

Query: 440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA 499
            PS SPDG  + F     G  N+ V+D   G      R LTD   +D  PS++P G +I 
Sbjct: 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGG----GERVLTDT-GLDESPSFAPNGRMIL 380

Query: 500 FSSNR 504
           +++ R
Sbjct: 381 YATTR 385

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 67.1 bits (164), Expect = 9e-12
 Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 32/181 (17%)

Query: 329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHV 387
             N   P+FSPDG  + F+   + +  I +   DG     L        + SWSP    +
Sbjct: 237 NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKI 296

Query: 388 IYTSTG----PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC 443
           ++TS       I+  +    Q+ R++F                         G N+ P  
Sbjct: 297 VFTSDRGGRPQIYLYDLEGSQVTRLTFSG-----------------------GGNSNPVW 333

Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
           SPDG  +VF S   G  ++   D  +G   G IR LT    ++  PSW+P G +I FSS 
Sbjct: 334 SPDGDKIVFESSSGGQWDIDKNDLASG---GKIRILTSTY-LNESPSWAPNGRMIMFSSG 389

Query: 504 R 504
           +
Sbjct: 390 Q 390

Length = 425

>gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 31/177 (17%)

Query: 358 IAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD 416
           +A SDG    T+++      + +WSP  K + Y S    F+  R+ + +           
Sbjct: 188 VADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVS----FERGRSAIYV----------- 232

Query: 417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI 476
               +++    + L     G N  PS SPDG+ L     R G+  ++V+D  + +    +
Sbjct: 233 ----QDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----L 284

Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRH-NPDNVEAFSLYVIKPDGSGLRRIHVAG 532
            +LT+   IDT P+W+P G  I F+S+R   P       +Y +   G    R+   G
Sbjct: 285 TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRP------QIYRVAASGGSAERLTFQG 335

Length = 433

>gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional

 Score = 65.8 bits (161), Expect = 3e-11
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 39/186 (20%)

Query: 379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN 438
           +WSP    + Y S    F+S++  V +                ++    + +     G+N
Sbjct: 202 AWSPDGTKLAYVS----FESKKPVVYV---------------HDLATGRRRVVANFKGSN 242

Query: 439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
           + P+ SPDG+ L     R G+  ++ ++A +G     +R+LT    IDT P +SP G  I
Sbjct: 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNA-DG---SGLRRLTQSSGIDTEPFFSPDGRSI 298

Query: 499 AFSSNRH-NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL 557
            F+S+R   P       +Y +   G   +R+      GS +    RI     S DG+ L 
Sbjct: 299 YFTSDRGGAP------QIYRMPASGGAAQRVTF---TGSYNTS-PRI-----SPDGKLLA 343

Query: 558 FTANLG 563
           + + +G
Sbjct: 344 YISRVG 349

Length = 427

>gnl|CDD|166839 PRK00178, tolB, translocation protein TolB; Provisional

 Score = 60.9 bits (148), Expect = 9e-10
 Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 24/147 (16%)

Query: 359 AKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDD 417
           +  DG++  TL++ R    +  WSP  K + Y S    F+ +R  + +  +       D 
Sbjct: 184 SDYDGARAVTLLQSREPILSPRWSPDGKRIAYVS----FEQKRPRIFVQNL-------DT 232

Query: 418 NNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR 477
             RE+I       T  E G N  P+ SPDG  L F   + G+  ++V+D  +      + 
Sbjct: 233 GRREQI-------TNFE-GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR----QLS 280

Query: 478 QLTDGPWIDTMPSWSPKGDLIAFSSNR 504
           ++T+ P IDT P W   G  + F+S+R
Sbjct: 281 RVTNHPAIDTEPFWGKDGRTLYFTSDR 307

Length = 430

>gnl|CDD|179329 PRK01742, tolB, translocation protein TolB; Provisional

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 24/150 (16%)

Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
           +++A  DG  ++ + +      + +WSP    + Y S    F+++++ + +         
Sbjct: 186 VRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVS----FENKKSQLVV--------- 232

Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
                  ++    + +     G+N  P+ SPDG  L F S + G  N++V+ A  G    
Sbjct: 233 ------HDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT--- 283

Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
              QLT G   +T PSWSP G  I F+S+R
Sbjct: 284 -PSQLTSGAGNNTEPSWSPDGQSILFTSDR 312

Length = 429

>gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional

 Score = 58.1 bits (141), Expect = 7e-09
 Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 40/173 (23%)

Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL-TDGPWIDTMPSWSPKGDLIA 499
           P+ SPDGK L + S   G   ++V D   G+     R+L      I+  PS+SP G  +A
Sbjct: 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-----RELVASFRGINGAPSFSPDGRRLA 263

Query: 500 FSSNRH-NPDNVEAFSLYVIKPDGSGLRRI--HVAGPEGSGDVDRERINHVCFSADGEWL 556
            + +R  NP+      +YV+      L R+  H         +D E      ++ DG+ +
Sbjct: 264 LTLSRDGNPE------IYVMDLGSRQLTRLTNHFG-------IDTE----PTWAPDGKSI 306

Query: 557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
            FT++ G             +P   +Y V   G    RLT+ G  N   +  P
Sbjct: 307 YFTSDRGG------------RP--QIYRVAASGGSAERLTFQGNYNARASVSP 345

Length = 433

>gnl|CDD|235143 PRK03629, tolB, translocation protein TolB; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
            +N  P+ SPDG  L F   ++G  NL+V+D  +G+    IRQ+TDG   +T P+W P  
Sbjct: 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDS 298

Query: 496 DLIAFSSNR 504
             +A++S++
Sbjct: 299 QNLAYTSDQ 307

Length = 429

>gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 44/175 (25%)

Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE------FNGDIRQLTDGPWIDTMPSWSPK 494
           P+ SPDG  L + S  S    ++V D   G       F G           ++ P+WSP 
Sbjct: 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGS----------NSAPAWSPD 250

Query: 495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE 554
           G  +A + +R          +Y +  DGSGLRR+       S  +D E      FS DG 
Sbjct: 251 GRTLAVALSRDG-----NSQIYTVNADGSGLRRL-----TQSSGIDTEP----FFSPDGR 296

Query: 555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
            + FT++ G              P   +Y +   G   +R+T+ G  N +P   P
Sbjct: 297 SIYFTSDRGG------------AP--QIYRMPASGGAAQRVTFTGSYNTSPRISP 337

Length = 427

>gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 42/217 (19%)

Query: 330 LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN--SWSPTEKHV 387
           +NG+ PSFSPDG  +      + N  I +    GS++ T + +        +W+P  K +
Sbjct: 249 INGA-PSFSPDGRRLALTLSRDGNPEIYVMDL-GSRQLTRLTNHFGIDTEPTWAPDGKSI 306

Query: 388 IYTSTGPIFQSERA-TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFPSCSP 445
            +TS       +R    QI RV+                  + LT +  GN NA  S SP
Sbjct: 307 YFTS-------DRGGRPQIYRVAASGGS------------AERLTFQ--GNYNARASVSP 345

Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
           DGK +    G  G   + V+D   G      R LT G   D  PS++P G ++ +++ R 
Sbjct: 346 DGKKIAMVHGSGGQYRIAVMDLSTGSV----RTLTPGSL-DESPSFAPNGSMVLYAT-RE 399

Query: 506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE 542
               V    L  +  DG   +R+        G+V RE
Sbjct: 400 GGRGV----LAAVSTDGRVRQRL----VSADGEV-RE 427

Length = 433

>gnl|CDD|235312 PRK04792, tolB, translocation protein TolB; Provisional

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 17/107 (15%)

Query: 404 QIARVSFQLDPSDDNNREEIPCDVKILTKEET------GNNAFPSCSPDGKFLVFRSGRS 457
           ++A VSF+      N + EI     I T+         G N  P  SPDGK L     + 
Sbjct: 231 KLAYVSFE------NRKAEIFV-QDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD 283

Query: 458 GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
           G   ++V+D         + ++T    IDT PSW P G  + F+S R
Sbjct: 284 GQPEIYVVDIATK----ALTRITRHRAIDTEPSWHPDGKSLIFTSER 326

Length = 448

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 45/169 (26%)

Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTS 391
           PS+SPDG  I F  D   +  I +  +DG +    +  R   YN   SWSP    + +  
Sbjct: 283 PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEA-RRLTFRGN-YNASPSWSPDGDLIAFVH 340

Query: 392 -TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL 450
             G  F        IA     +D              ++LT  +TG +  PS +P+G+ +
Sbjct: 341 REGGGFN-------IAV----MDLDGG--------GERVLT--DTGLDESPSFAPNGRMI 379

Query: 451 VFRSGRSGHKNLFVLDAVNGEF-------NGDIRQLTDGPWIDTMPSWS 492
           ++ + R G   L +  + +G F        GD+R           P+WS
Sbjct: 380 LYATTRGGRGVLGL-VSTDGRFRARLPLGQGDVR----------EPAWS 417

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 72/263 (27%), Positives = 99/263 (37%), Gaps = 52/263 (19%)

Query: 247 TPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFI-GYHRFRG-- 303
           TPA   DGK+LA  +       R   IY L LN         V  N     G   F    
Sbjct: 197 TPAWSPDGKKLAYVSFELGGCPR---IYYLDLNTG----KRPVILNFNGNNGAPAFSPDG 249

Query: 304 ------ESTEGQSTIPHLEPVASPVKELRMLRLNGSF-----PSFSPDGGLIVFNHDFEL 352
                  S +G   I +L  +    K L   RL   F     PS+SPDG  IVF  D   
Sbjct: 250 SKLAFSSSRDGSPDI-YLMDLDG--KNLP--RLTNGFGINTSPSWSPDGSKIVFTSDRGG 304

Query: 353 NAGIKIAKSDGSK--RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
              I +   +GS+  R T           WSP    +++ S      S      I     
Sbjct: 305 RPQIYLYDLEGSQVTRLTF-SGGGNSNPVWSPDGDKIVFES------SSGGQWDI----- 352

Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG 470
                D N+       ++ILT   T  N  PS +P+G+ ++F SG+ G   L ++   +G
Sbjct: 353 -----DKNDLASGG-KIRILTS--TYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSL-DG 403

Query: 471 EFNGDIRQLTDGPWIDTMPSWSP 493
             +  +  L DG      P+WSP
Sbjct: 404 RVSRPL-PLADGDVRV--PAWSP 423

Length = 425

>gnl|CDD|203719 pfam07676, PD40, WD40-like Beta Propeller Repeat

 Score = 42.5 bits (101), Expect = 9e-06
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
           ++LT+ P  +  PSWSP G  +AF+S+R 
Sbjct: 2   KRLTNTPGNEGEPSWSPDGKRLAFTSDRG 30

This family appears to be related to the pfam00400 repeat This This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Length = 37

>gnl|CDD|235312 PRK04792, tolB, translocation protein TolB; Provisional

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 38/165 (23%)

Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
           P+ SPDG+ L + S  +    +FV D     +     ++T  P I+  P +SP G  +A 
Sbjct: 223 PAWSPDGRKLAYVSFENRKAEIFVQDI----YTQVREKVTSFPGINGAPRFSPDGKKLAL 278

Query: 501 S-SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV--CFSADGEWLL 557
             S    P+      +YV+      L RI            R R       +  DG+ L+
Sbjct: 279 VLSKDGQPE------IYVVDIATKALTRI-----------TRHRAIDTEPSWHPDGKSLI 321

Query: 558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN 602
           FT+  G             +P   +Y V L    + RLT+ G +N
Sbjct: 322 FTSERGG------------KP--QIYRVNLASGKVSRLTFEGEQN 352

Length = 448

>gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 41/181 (22%)

Query: 331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYN---SWSPTEK 385
           + S P++SPDG  +      + N+ I    +DGS  +R T    +++  +    +SP  +
Sbjct: 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT----QSSGIDTEPFFSPDGR 296

Query: 386 HVIYTST---GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN-NAFP 441
            + +TS     P         QI R+     P+     + +           TG+ N  P
Sbjct: 297 SIYFTSDRGGAP---------QIYRM-----PASGGAAQRVTF---------TGSYNTSP 333

Query: 442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
             SPDGK L + S   G   L+V D       G +  LTD    D  PS++P G  I ++
Sbjct: 334 RISPDGKLLAYISRVGGAFKLYVQDLA----TGQVTALTDTTR-DESPSFAPNGRYILYA 388

Query: 502 S 502
           +
Sbjct: 389 T 389

Length = 427

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 56/282 (19%), Positives = 89/282 (31%), Gaps = 46/282 (16%)

Query: 16  YYGFDVFSIKSPFVNAPKFH-------EHRLTDGTSINFNAQFVDGQDQT-IAFISERSG 67
           +  FD  +      N+            H + D          + G   T IA+++E  G
Sbjct: 111 FQLFDTSTGFQLLGNSLVVTALLLRRAAHTIADAIYEKLTG--IKGAFDTRIAYVAESDG 168

Query: 68  SPRIYQTRPGSSKTE----LLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALY 123
            P  Y+   G         L  S    L      + + K     + E           +Y
Sbjct: 169 GPLPYELALGDYDGYNQQKLTDSGSLILTPA--WSPDGKKLAYVSFE-----LGGCPRIY 221

Query: 124 STDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDP 183
             DL   K   +  +   + +P+ S  G  +A +S  SR         + DI +      
Sbjct: 222 YLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSS--SRDG-------SPDIYLMDLDGK 272

Query: 184 NKRVIVCERG--GWPTWSGD-STIYFHRQADDGWWS-IFRVSFPENLEFLGFPIAPTRVT 239
           N   +    G    P+WS D S I F   +D G    I+      +LE        TR+T
Sbjct: 273 NLPRLTNGFGINTSPSWSPDGSKIVF--TSDRGGRPQIYLY----DLE----GSQVTRLT 322

Query: 240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN 281
             G     P    DG ++   +   +     I+  DL     
Sbjct: 323 FSGGGNSNPVWSPDGDKIVFESS--SGGQWDIDKNDLASGGK 362

Length = 425

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 69/202 (34%)

Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF-------- 500
           ++    G      L + D  +G      ++LTD   +   P+WSP G  +A+        
Sbjct: 162 YVAESDGGPLPYELALGDY-DGYNQ---QKLTDSGSLILTPAWSPDGKKLAYVSFELGGC 217

Query: 501 -----------------SSNRHN------PDNVE-AFS--------LYVIKPDGSGLRRI 528
                            + N +N      PD  + AFS        +Y++  DG  L R+
Sbjct: 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL 277

Query: 529 -HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL 587
            +  G   S            +S DG  ++FT++ G                  +Y+  L
Sbjct: 278 TNGFGINTSPS----------WSPDGSKIVFTSDRGGRP--------------QIYLYDL 313

Query: 588 DGSGLRRLTWNGYENGTPAWHP 609
           +GS + RLT++G  N  P W P
Sbjct: 314 EGSQVTRLTFSGGGNSNPVWSP 335

Length = 425

>gnl|CDD|235212 PRK04043, tolB, translocation protein TolB; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 38  RLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR-- 95
           ++T+   I+ N  FV+  D+ I F+S+R G P I+  +  S   E +      +FH +  
Sbjct: 271 QITNYPGIDVNGNFVED-DKRIVFVSDRLGYPNIFMKKLNSGSVEQV------VFHGKNN 323

Query: 96  -PVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGV 140
             V+        S+ E  ++  K+   LY     +    RLT  GV
Sbjct: 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV 369

Length = 419

>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB

 Score = 42.2 bits (100), Expect = 7e-04
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 27/134 (20%)

Query: 36  EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELL---------PS 86
             RLT+G  I+    +     ++IAF S+R GSP+IY       +   L         PS
Sbjct: 270 LTRLTNGPGIDTEPSW-SPDGKSIAFTSDRGGSPQIYMMDADGGEARRLTFRGNYNASPS 328

Query: 87  IPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPS 146
                         + + F+    +    F     +   DL      R+     +D SPS
Sbjct: 329 WS---------PDGDLIAFVH---REGGGFN----IAVMDL-DGGGERVLTDTGLDESPS 371

Query: 147 VSYSGKFIAVASYE 160
            + +G+ I  A+  
Sbjct: 372 FAPNGRMILYATTR 385

Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417

>gnl|CDD|235143 PRK03629, tolB, translocation protein TolB; Provisional

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP 493
           E   N     S DGKF+V  S   G +++   D   G     ++ LTD  ++D  PS +P
Sbjct: 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----VQVLTD-TFLDETPSIAP 383

Query: 494 KGDLIAFSS 502
            G ++ +SS
Sbjct: 384 NGTMVIYSS 392

Length = 429

>gnl|CDD|216201 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 444 SPDGKFLVFRSGRSGH-----KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI 498
           SPDGK+L+  +             + +  +     G +  L  G        WSP G  +
Sbjct: 1   SPDGKYLLLATNYEKIWRHSYTASYYIYDLE---TGTVEPLPPGEGKIQYAKWSPDGHKL 57

Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG-----SGDVDRERI----NHVCF 549
           A+  +          +LYV +       +I   G  G     +  V  E +    +   +
Sbjct: 58  AYVRDN---------NLYVRELATGKETQITSDGSNGIFNGLADWVYEEEVFGSNSAYWW 108

Query: 550 SADGEWLLFT 559
           S DG  L F 
Sbjct: 109 SPDGSRLAFL 118

This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry. Length = 348

>gnl|CDD|223893 COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 45/213 (21%), Positives = 65/213 (30%), Gaps = 42/213 (19%)

Query: 15  PYYGFDVFSIKSPFVNAPKFHE-HRLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIY 72
            Y  F++      +       +   + +    N    F  DG    +AF S R GSP IY
Sbjct: 208 AYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGS--KLAFSSSRDGSPDIY 265

Query: 73  QTRPGSSKTELLPSIPCSLFHDRPVARN---------NKLFFISAHEQPDQIFKSWSALY 123
                  K   LP +            N         +K+ F S      QI+     LY
Sbjct: 266 LM-DLDGKN--LPRL------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIY-----LY 311

Query: 124 STDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVF-QESD 182
             +      TRLT  G  + +P  S  G  I   S     W         DI      S 
Sbjct: 312 DLEGSQV--TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQW---------DIDKNDLASG 360

Query: 183 PNKRVI-VCERGGWPTWS--GDSTIYFHRQADD 212
              R++        P+W+  G   ++   Q   
Sbjct: 361 GKIRILTSTYLNESPSWAPNGRMIMFSSGQGGG 393

Length = 425

>gnl|CDD|166839 PRK00178, tolB, translocation protein TolB; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)

Query: 38  RLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV 97
           R+T+  +I+    F     +T+ F S+R G P+IY+      + E +  +       R  
Sbjct: 281 RVTNHPAIDTEP-FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLS 339

Query: 98  ARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVA 157
           A    L  +  H Q D  F     + + DL+      LT    +D SPSV+ +G  +  A
Sbjct: 340 ADGKTLVMV--HRQ-DGNFH----VAAQDLQRGSVRILTDTS-LDESPSVAPNGTMLIYA 391

Query: 158 S 158
           +
Sbjct: 392 T 392

Length = 430

>gnl|CDD|235143 PRK03629, tolB, translocation protein TolB; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 36/168 (21%)

Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
           P+ SPDG  L + +  SG   L V+  +    NG +RQ+   P  +  P++SP G  +AF
Sbjct: 204 PAWSPDGSKLAYVTFESGRSAL-VIQTLA---NGAVRQVASFPRHNGAPAFSPDGSKLAF 259

Query: 501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV--CFSADGEWLLF 558
           + ++    N     LYV+    SG  R           V   R N+    +  D + L +
Sbjct: 260 ALSKTGSLN-----LYVMDL-ASGQIR----------QVTDGRSNNTEPTWFPDSQNLAY 303

Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPA 606
           T++           P        +Y V ++G   +R+TW G +N    
Sbjct: 304 TSDQAGR-------PQ-------VYKVNINGGAPQRITWEGSQNQDAD 337

Length = 429

>gnl|CDD|179329 PRK01742, tolB, translocation protein TolB; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 32/102 (31%)

Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE--------FNGDI---------- 476
            GNN  PS SPDG+ ++F S RSG   ++ + A  G         ++  I          
Sbjct: 291 AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMI 350

Query: 477 -------RQLTDG-------PWIDTMPSWSPKGDLIAFSSNR 504
                  + LT G        ++D  PS SP G +I +SS +
Sbjct: 351 NGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQ 392

Length = 429

>gnl|CDD|234889 PRK01029, tolB, translocation protein TolB; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT 487
           ++LTK+   N++ P+ SPDGK + F S   G + + V D   G       QLT  P    
Sbjct: 320 RLLTKKYR-NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----DYQLTTSPENKE 374

Query: 488 MPSWSPKGDLIAFSS 502
            PSW+     + +S+
Sbjct: 375 SPSWAIDSLHLVYSA 389

Length = 428

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	642
COG4946	668	Uncharacterized protein related to the periplasmic	100.0
COG4946	668	Uncharacterized protein related to the periplasmic	99.97
PRK01029	428	tolB translocation protein TolB; Provisional	99.95
PRK01029	428	tolB translocation protein TolB; Provisional	99.94
PRK03629	429	tolB translocation protein TolB; Provisional	99.94
PRK02889	427	tolB translocation protein TolB; Provisional	99.94
PRK05137	435	tolB translocation protein TolB; Provisional	99.94
PRK04043	419	tolB translocation protein TolB; Provisional	99.94
PRK04792	448	tolB translocation protein TolB; Provisional	99.94
PRK03629	429	tolB translocation protein TolB; Provisional	99.94
PRK04922	433	tolB translocation protein TolB; Provisional	99.93
PRK00178	430	tolB translocation protein TolB; Provisional	99.93
PRK05137	435	tolB translocation protein TolB; Provisional	99.92
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.92
PRK04043	419	tolB translocation protein TolB; Provisional	99.92
PRK01742	429	tolB translocation protein TolB; Provisional	99.91
PRK02889	427	tolB translocation protein TolB; Provisional	99.91
PRK04792	448	tolB translocation protein TolB; Provisional	99.91
PRK04922	433	tolB translocation protein TolB; Provisional	99.9
PRK00178	430	tolB translocation protein TolB; Provisional	99.9
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.9
PRK01742	429	tolB translocation protein TolB; Provisional	99.89
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.88
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.88
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.87
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.85
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.85
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.84
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.84
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.81
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.8
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	99.78
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.75
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.73
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	99.73
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.71
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.71
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.68
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.68
KOG0286	343	consensus G-protein beta subunit [General function	99.68
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.64
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.63
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.62
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.62
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.61
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.6
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.6
KOG2096	420	consensus WD40 repeat protein [General function pr	99.6
PRK11028	330	6-phosphogluconolactonase; Provisional	99.59
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.59
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.58
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.58
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.57
KOG2314	698	consensus Translation initiation factor 3, subunit	99.56
KOG0296	399	consensus Angio-associated migratory cell protein	99.56
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.56
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.55
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.55
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.53
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.53
KOG0286	343	consensus G-protein beta subunit [General function	99.52
PRK11028	330	6-phosphogluconolactonase; Provisional	99.52
KOG2055	514	consensus WD40 repeat protein [General function pr	99.52
KOG0266	456	consensus WD40 repeat-containing protein [General	99.49
KOG0266	456	consensus WD40 repeat-containing protein [General	99.49
KOG2048	691	consensus WD40 repeat protein [General function pr	99.48
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.47
KOG2314	698	consensus Translation initiation factor 3, subunit	99.47
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.47
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.46
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.46
KOG2096	420	consensus WD40 repeat protein [General function pr	99.45
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.44
KOG0296	399	consensus Angio-associated migratory cell protein	99.44
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.41
KOG1539	910	consensus WD repeat protein [General function pred	99.4
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.39
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.39
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.37
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.36
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.36
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.35
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.35
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.34
PLN00181	793	protein SPA1-RELATED; Provisional	99.33
PLN00181	793	protein SPA1-RELATED; Provisional	99.32
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.31
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.3
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.3
KOG0645	312	consensus WD40 repeat protein [General function pr	99.29
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.29
KOG2048	691	consensus WD40 repeat protein [General function pr	99.29
KOG2055	514	consensus WD40 repeat protein [General function pr	99.28
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.27
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.27
KOG1274	933	consensus WD40 repeat protein [General function pr	99.27
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.26
PTZ00421	493	coronin; Provisional	99.25
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.22
KOG0643	327	consensus Translation initiation factor 3, subunit	99.22
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.22
KOG2315	566	consensus Predicted translation initiation factor	99.22
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.21
PTZ00421	493	coronin; Provisional	99.21
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.21
KOG2315	566	consensus Predicted translation initiation factor	99.2
KOG0639	705	consensus Transducin-like enhancer of split protei	99.2
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.19
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	99.18
KOG0645	312	consensus WD40 repeat protein [General function pr	99.17
PTZ00420	568	coronin; Provisional	99.17
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.17
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.15
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.15
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.15
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.14
PRK10115	686	protease 2; Provisional	99.14
KOG0643	327	consensus Translation initiation factor 3, subunit	99.13
PTZ00420	568	coronin; Provisional	99.1
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.09
KOG1274	933	consensus WD40 repeat protein [General function pr	99.07
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.05
KOG1539	910	consensus WD repeat protein [General function pred	99.04
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.03
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.03
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.0
KOG2139	445	consensus WD40 repeat protein [General function pr	99.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.98
KOG0295	406	consensus WD40 repeat-containing protein [Function	98.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	98.95
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.94
PRK13616	591	lipoprotein LpqB; Provisional	98.93
KOG0639	705	consensus Transducin-like enhancer of split protei	98.92
KOG1273	405	consensus WD40 repeat protein [General function pr	98.9
KOG2139	445	consensus WD40 repeat protein [General function pr	98.87
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.87
KOG0278	334	consensus Serine/threonine kinase receptor-associa	98.86
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.86
KOG0289	506	consensus mRNA splicing factor [General function p	98.85
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	98.84
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	98.83
PRK13616	591	lipoprotein LpqB; Provisional	98.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.81
KOG0283	712	consensus WD40 repeat-containing protein [Function	98.79
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	98.78
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.78
KOG0289	506	consensus mRNA splicing factor [General function p	98.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.77
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.76
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.75
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.74
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.73
KOG1273	405	consensus WD40 repeat protein [General function pr	98.72
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.72
KOG0316	307	consensus Conserved WD40 repeat-containing protein	98.7
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.7
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.69
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.68
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.67
KOG0278	334	consensus Serine/threonine kinase receptor-associa	98.67
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.66
PRK10115	686	protease 2; Provisional	98.66
KOG0641	350	consensus WD40 repeat protein [General function pr	98.63
KOG4328	498	consensus WD40 protein [Function unknown]	98.62
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.61
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.61
KOG0641	350	consensus WD40 repeat protein [General function pr	98.6
COG1770	682	PtrB Protease II [Amino acid transport and metabol	98.59
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.56
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.53
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	98.51
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.49
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.46
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.46
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	98.46
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.46
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.45
KOG0316	307	consensus Conserved WD40 repeat-containing protein	98.44
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.44
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.44
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.44
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.44
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.43
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.42
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.39
PRK02888	635	nitrous-oxide reductase; Validated	98.38
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.38
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.38
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.38
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	98.37
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	98.35
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.35
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	98.35
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.32
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.31
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.31
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.28
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	98.28
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.28
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.28
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	98.27
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.26
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.26
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.25
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.24
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.23
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	98.23
KOG1963	792	consensus WD40 repeat protein [General function pr	98.21
KOG0647	347	consensus mRNA export protein (contains WD40 repea	98.19
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.18
PRK02888	635	nitrous-oxide reductase; Validated	98.16
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.14
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.13
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.13
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.13
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.09
KOG0646	476	consensus WD40 repeat protein [General function pr	98.09
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.08
KOG0646	476	consensus WD40 repeat protein [General function pr	98.07
COG3391	381	Uncharacterized conserved protein [Function unknow	98.07
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.07
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.06
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	98.04
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	98.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	97.97
KOG1963	792	consensus WD40 repeat protein [General function pr	97.94
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	97.92
KOG0303	472	consensus Actin-binding protein Coronin, contains	97.91
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	97.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	97.85
KOG0300	481	consensus WD40 repeat-containing protein [Function	97.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	97.84
KOG4283	397	consensus Transcription-coupled repair protein CSA	97.84
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	97.82
COG3391	381	Uncharacterized conserved protein [Function unknow	97.8
KOG4328	498	consensus WD40 protein [Function unknown]	97.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	97.78
KOG2111	346	consensus Uncharacterized conserved protein, conta	97.76
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.73
COG1770	682	PtrB Protease II [Amino acid transport and metabol	97.7
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.68
KOG0308	735	consensus Conserved WD40 repeat-containing protein	97.66
KOG2321	703	consensus WD40 repeat protein [General function pr	97.63
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.58
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	97.56
KOG0300	481	consensus WD40 repeat-containing protein [Function	97.52
KOG0267	825	consensus Microtubule severing protein katanin p80	97.52
KOG0290	364	consensus Conserved WD40 repeat-containing protein	97.48
KOG0302	440	consensus Ribosome Assembly protein [General funct	97.45
KOG4227	609	consensus WD40 repeat protein [General function pr	97.43
KOG0649	325	consensus WD40 repeat protein [General function pr	97.42
KOG2321	703	consensus WD40 repeat protein [General function pr	97.4
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.39
COG2319	466	FOG: WD40 repeat [General function prediction only	97.38
KOG2100	755	consensus Dipeptidyl aminopeptidase [Posttranslati	97.37
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	97.36
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	97.34
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.33
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.31
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	97.28
KOG0290	364	consensus Conserved WD40 repeat-containing protein	97.27
KOG0267	825	consensus Microtubule severing protein katanin p80	97.26
KOG2111	346	consensus Uncharacterized conserved protein, conta	97.26
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.25
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	97.22
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.2
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.19
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.18
KOG4547	541	consensus WD40 repeat-containing protein [General	97.15
KOG0270	463	consensus WD40 repeat-containing protein [Function	97.14
KOG4227	609	consensus WD40 repeat protein [General function pr	97.12
COG2319	466	FOG: WD40 repeat [General function prediction only	97.1
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.1
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.06
KOG4547	541	consensus WD40 repeat-containing protein [General	97.04
KOG0301	745	consensus Phospholipase A2-activating protein (con	96.97
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.93
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	96.93
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.89
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.88
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.84
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.83
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.82
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.76
KOG2100	755	consensus Dipeptidyl aminopeptidase [Posttranslati	96.76
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	96.73
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.66
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.64
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	96.61
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.57
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.41
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	96.41
KOG0649	325	consensus WD40 repeat protein [General function pr	96.4
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.3
KOG3881	412	consensus Uncharacterized conserved protein [Funct	96.25
KOG1310	758	consensus WD40 repeat protein [General function pr	96.23
KOG0301	745	consensus Phospholipase A2-activating protein (con	96.19
PRK13614	573	lipoprotein LpqB; Provisional	96.17
KOG0270	463	consensus WD40 repeat-containing protein [Function	96.13
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.12
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.1
KOG1188	376	consensus WD40 repeat protein [General function pr	96.08
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.07
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.03
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	95.96
PRK13613	599	lipoprotein LpqB; Provisional	95.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	95.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	95.81
KOG4532	344	consensus WD40-like repeat containing protein [Gen	95.8
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.75
PRK13613	599	lipoprotein LpqB; Provisional	95.7
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	95.59
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.47
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.32
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.27
PRK13615	557	lipoprotein LpqB; Provisional	95.25
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.06
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	94.91
KOG1912	1062	consensus WD40 repeat protein [General function pr	94.77
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	94.75
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	94.73
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	94.72
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	94.6
PRK13614	573	lipoprotein LpqB; Provisional	94.59
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	94.55
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	94.54
PRK13615	557	lipoprotein LpqB; Provisional	94.26
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	94.06
KOG3621	726	consensus WD40 repeat-containing protein [General	94.0
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.97
KOG0644	1113	consensus Uncharacterized conserved protein, conta	93.97
KOG0644	1113	consensus Uncharacterized conserved protein, conta	93.97
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	93.87
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.75
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	93.64
KOG3621	726	consensus WD40 repeat-containing protein [General	93.4
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.14
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	92.99
PHA03098	534	kelch-like protein; Provisional	92.84
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.74
KOG1334	559	consensus WD40 repeat protein [General function pr	92.59
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	92.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.36
KOG1214	1289	consensus Nidogen and related basement membrane pr	92.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	92.12
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.95
KOG2281	867	consensus Dipeptidyl aminopeptidases/acylaminoacyl	91.83
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.69
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.54
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	91.14
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	91.12
KOG1188	376	consensus WD40 repeat protein [General function pr	90.79
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.6
KOG1214	1289	consensus Nidogen and related basement membrane pr	89.88
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.67
COG1505	648	Serine proteases of the peptidase family S9A [Amin	89.24
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	88.59
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	88.25
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	88.07
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	88.07
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	87.93
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.52
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.29
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	87.21
KOG1334	559	consensus WD40 repeat protein [General function pr	87.2
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	86.88
COG3211	616	PhoX Predicted phosphatase [General function predi	86.68
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.44
KOG1310	758	consensus WD40 repeat protein [General function pr	86.23
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	86.1
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	85.69
KOG2395	644	consensus Protein involved in vacuole import and d	85.63
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	84.49
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	83.65
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.34
KOG2395	644	consensus Protein involved in vacuole import and d	83.27
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	81.28
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	81.18

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=100.00  E-value=3.2e-30  Score=246.27  Aligned_cols=447  Identities=19%  Similarity=0.237  Sum_probs=317.6

Q ss_pred             CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCC----CcceEEEcCCC
Q 039497            3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSG----SPRIYQTRPGS   78 (642)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g----~~~l~~~~~~g   78 (642)
                      .|++|.|+      +..|+|..++..     |.++|||.+-+.+-+|+|| |||+.|||+...-|    ..+||++...+
T Consensus        49 ~GD~IiFt------~~DdlWe~slk~-----g~~~ritS~lGVvnn~kf~-pdGrkvaf~rv~~~ss~~taDly~v~~e~  116 (668)
T COG4946          49 YGDRIIFT------CCDDLWEYSLKD-----GKPLRITSGLGVVNNPKFS-PDGRKVAFSRVMLGSSLQTADLYVVPSED  116 (668)
T ss_pred             cCcEEEEE------echHHHHhhhcc-----CCeeEEecccceeccccCC-CCCcEEEEEEEEecCCCccccEEEEeCCC
Confidence            58999999      999999999998     9999999999999999999 99999999533322    57899994443


Q ss_pred             CcccccCCCCCCcccccccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEE
Q 039497           79 SKTELLPSIPCSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAV  156 (642)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~  156 (642)
                      ..+.+++-. +..+.+..-|  +|..++.+....    ++..|.+||.++.++.+..+|..+++..  . +-.|| .|+.
T Consensus       117 Ge~kRiTyf-Gr~fT~VaG~~~dg~iiV~TD~~t----PF~q~~~lYkv~~dg~~~e~LnlGpath--i-v~~dg-~ivi  187 (668)
T COG4946         117 GEAKRITYF-GRRFTRVAGWIPDGEIIVSTDFHT----PFSQWTELYKVNVDGIKTEPLNLGPATH--I-VIKDG-IIVI  187 (668)
T ss_pred             CcEEEEEEe-ccccceeeccCCCCCEEEEeccCC----CcccceeeeEEccCCceeeeccCCceee--E-EEeCC-EEEE
Confidence            322222211 1112222222  555555544432    6777889999999999999998776543  2 34577 3444


Q ss_pred             Ee--cCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCC
Q 039497          157 AS--YESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFP  232 (642)
Q Consensus       157 ~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~  232 (642)
                      .+  .+.+.|+++..+..+.||+-...+...+++..-.+  .+|..-.+ ++||.. +.+|.-+||.+|+++.       
T Consensus       188 gRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~-RvYFls-D~eG~GnlYSvdldGk-------  258 (668)
T COG4946         188 GRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGE-RVYFLS-DHEGVGNLYSVDLDGK-------  258 (668)
T ss_pred             ccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcc-eEEEEe-cccCccceEEeccCCc-------
Confidence            43  46779999988888899887766656666665433  45665544 888888 7788889999999997       


Q ss_pred             ccceeeCCC-CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcc
Q 039497          233 IAPTRVTPP-GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQST  311 (642)
Q Consensus       233 ~~~~~l~~~-~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  311 (642)
                       ...+.|.. ++...+  .+.|||+|+|.  .    ...|++||..+.....                            
T Consensus       259 -DlrrHTnFtdYY~R~--~nsDGkrIvFq--~----~GdIylydP~td~lek----------------------------  301 (668)
T COG4946         259 -DLRRHTNFTDYYPRN--ANSDGKRIVFQ--N----AGDIYLYDPETDSLEK----------------------------  301 (668)
T ss_pred             -hhhhcCCchhccccc--cCCCCcEEEEe--c----CCcEEEeCCCcCccee----------------------------
Confidence             66777765 433332  35799999993  2    3389999873322000                            


Q ss_pred             cceEe-eccCCCceeEEeeeCCCcc-EEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEE
Q 039497          312 IPHLE-PVASPVKELRMLRLNGSFP-SFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVI  388 (642)
Q Consensus       312 ~~~~~-~~~~~~~~~~~~~~~~~~~-~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~  388 (642)
                       +.+. ++..+... ...-...... .|++ +|++|++++.    ++.++++...+-..++...+.+....+.-|++.++
T Consensus       302 -ldI~lpl~rk~k~-~k~~~pskyledfa~~~Gd~ia~VSR----GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~v  375 (668)
T COG4946         302 -LDIGLPLDRKKKQ-PKFVNPSKYLEDFAVVNGDYIALVSR----GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDV  375 (668)
T ss_pred             -eecCCcccccccc-ccccCHHHhhhhhccCCCcEEEEEec----CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceE
Confidence             0000 11111000 0000000011 2333 6899999885    78999999888888888777788888998998887


Q ss_pred             EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497          389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV  468 (642)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~  468 (642)
                      ...+      +...+.+++.+.         +     +.+++...- +.+..+..||||++++.+.+   +.+||++|++
T Consensus       376 igt~------dgD~l~iyd~~~---------~-----e~kr~e~~l-g~I~av~vs~dGK~~vvaNd---r~el~vidid  431 (668)
T COG4946         376 IGTN------DGDKLGIYDKDG---------G-----EVKRIEKDL-GNIEAVKVSPDGKKVVVAND---RFELWVIDID  431 (668)
T ss_pred             Eecc------CCceEEEEecCC---------c-----eEEEeeCCc-cceEEEEEcCCCcEEEEEcC---ceEEEEEEec
Confidence            7764      345777877754         3     566666665 77888999999999988764   4599999999


Q ss_pred             CCccccceeeCCCCC-CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccce
Q 039497          469 NGEFNGDIRQLTDGP-WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV  547 (642)
Q Consensus       469 ~g~~~~~~~~l~~~~-~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~  547 (642)
                      +|+.    +.+.... +-+..+.|||++++|+|+--.+-    ...+|.++|+++++.-.+|....         +-.++
T Consensus       432 ngnv----~~idkS~~~lItdf~~~~nsr~iAYafP~gy----~tq~Iklydm~~~Kiy~vTT~ta---------~DfsP  494 (668)
T COG4946         432 NGNV----RLIDKSEYGLITDFDWHPNSRWIAYAFPEGY----YTQSIKLYDMDGGKIYDVTTPTA---------YDFSP  494 (668)
T ss_pred             CCCe----eEecccccceeEEEEEcCCceeEEEecCcce----eeeeEEEEecCCCeEEEecCCcc---------cccCc
Confidence            9993    7776543 45678899999999999987653    67889999999999988886543         33789


Q ss_pred             EEcCCCCEEEEEEecC
Q 039497          548 CFSADGEWLLFTANLG  563 (642)
Q Consensus       548 ~~S~Dg~~l~~~~~~~  563 (642)
                      +|.|||++|||.+.+.
T Consensus       495 aFD~d~ryLYfLs~Rs  510 (668)
T COG4946         495 AFDPDGRYLYFLSARS  510 (668)
T ss_pred             ccCCCCcEEEEEeccc
Confidence            9999999999999765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.97  E-value=1.1e-26  Score=222.22  Aligned_cols=437  Identities=17%  Similarity=0.199  Sum_probs=299.5

Q ss_pred             ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeee
Q 039497           95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTD  174 (642)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~  174 (642)
                      .|.+-|.+++|+...           +||..++..|++.+||.+-+....|.|||||++|||.+--.    +. .....+
T Consensus        45 ~PDI~GD~IiFt~~D-----------dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~----~s-s~~taD  108 (668)
T COG4946          45 NPDIYGDRIIFTCCD-----------DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVML----GS-SLQTAD  108 (668)
T ss_pred             CCcccCcEEEEEech-----------HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEe----cC-CCcccc
Confidence            577789999999976           69999999999999999999999999999999999954211    00 124679


Q ss_pred             EEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEecCCC---ceEEEEEecCCCcccccCCccceeeCCCCCccccc
Q 039497          175 IVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQADDG---WWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTP  248 (642)
Q Consensus       175 l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~~~g---~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  248 (642)
                      ||+++.++|+.+++|....   ..+.|+|||.++++......   .-.+|+++.++.        ..++|.-..  +.++
T Consensus       109 ly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~--------~~e~LnlGp--athi  178 (668)
T COG4946         109 LYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI--------KTEPLNLGP--ATHI  178 (668)
T ss_pred             EEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCc--------eeeeccCCc--eeeE
Confidence            9999999999999998633   35699999998888743322   238999998886        344543322  2223


Q ss_pred             eeecCCcEEEEEEe---------ccCCceeeEEEEEe-------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCccc
Q 039497          249 AAFHDGKRLAVATR---------RKNRNFRHIEIYDL-------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTI  312 (642)
Q Consensus       249 ~~SpdG~~l~~~~~---------~~~~~~~~i~~~d~-------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  312 (642)
                      .+ .|| .++..+.         .+|+....||+-.-       ...-..++++|.+-  |.+++|...-...     -.
T Consensus       179 v~-~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV--~~RvYFlsD~eG~-----Gn  249 (668)
T COG4946         179 VI-KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV--GERVYFLSDHEGV-----GN  249 (668)
T ss_pred             EE-eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE--cceEEEEecccCc-----cc
Confidence            33 577 3444321         23455556555332       11223445555554  5677777543332     24


Q ss_pred             ceEeeccCCCceeEEeeeCCCcc-EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-----C----Cce----ee
Q 039497          313 PHLEPVASPVKELRMLRLNGSFP-SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-----R----TAF----YN  378 (642)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~-~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-----~----~~~----~~  378 (642)
                      ++..+++++--. ..+.+....+ ..+.||++|+|..    .+.||++|.++.....+...     .    ...    .+
T Consensus       250 lYSvdldGkDlr-rHTnFtdYY~R~~nsDGkrIvFq~----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyl  324 (668)
T COG4946         250 LYSVDLDGKDLR-RHTNFTDYYPRNANSDGKRIVFQN----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYL  324 (668)
T ss_pred             eEEeccCCchhh-hcCCchhccccccCCCCcEEEEec----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhh
Confidence            455666654111 1223333333 3588999999944    57899999988876665431     0    000    01


Q ss_pred             -eeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC
Q 039497          379 -SWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR  456 (642)
Q Consensus       379 -~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~  456 (642)
                       .|++ +|..+++++++        +..|.+...         +     -.-++...  +.+..-.++-|++.++....+
T Consensus       325 edfa~~~Gd~ia~VSRG--------kaFi~~~~~---------~-----~~iqv~~~--~~VrY~r~~~~~e~~vigt~d  380 (668)
T COG4946         325 EDFAVVNGDYIALVSRG--------KAFIMRPWD---------G-----YSIQVGKK--GGVRYRRIQVDPEGDVIGTND  380 (668)
T ss_pred             hhhccCCCcEEEEEecC--------cEEEECCCC---------C-----eeEEcCCC--CceEEEEEccCCcceEEeccC
Confidence             1333 78999999954        333333211         1     22222222  345556677777776666543


Q ss_pred             CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCC
Q 039497          457 SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS  536 (642)
Q Consensus       457 ~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~  536 (642)
                      .  ..|-++|..+|+    ++.+...-+.+..+..+|||++++.+.++.        +||++|+++++.+.+.... .+ 
T Consensus       381 g--D~l~iyd~~~~e----~kr~e~~lg~I~av~vs~dGK~~vvaNdr~--------el~vididngnv~~idkS~-~~-  444 (668)
T COG4946         381 G--DKLGIYDKDGGE----VKRIEKDLGNIEAVKVSPDGKKVVVANDRF--------ELWVIDIDNGNVRLIDKSE-YG-  444 (668)
T ss_pred             C--ceEEEEecCCce----EEEeeCCccceEEEEEcCCCcEEEEEcCce--------EEEEEEecCCCeeEecccc-cc-
Confidence            2  268888999888    588888878888999999999998887665        4999999999999887633 34 


Q ss_pred             CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceE--
Q 039497          537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLD--  614 (642)
Q Consensus       537 ~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~--  614 (642)
                            .+....|+|++++|+|.-.++-.             .+.|.++|.+++++-.+|.......+|+|.|||+++  
T Consensus       445 ------lItdf~~~~nsr~iAYafP~gy~-------------tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         445 ------LITDFDWHPNSRWIAYAFPEGYY-------------TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             ------eeEEEEEcCCceeEEEecCccee-------------eeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence                  57889999999999998776543             358999999999999999877778999999999664  


Q ss_pred             EeecCCCcccccceeee
Q 039497          615 LGKLRLEDDIGDKLRGQ  631 (642)
Q Consensus       615 ~~~~~~~~~~~~~~~~~  631 (642)
                      ++.+.+. ++.+...-.
T Consensus       506 Ls~RsLd-Ps~Drv~fn  521 (668)
T COG4946         506 LSARSLD-PSNDRVIFN  521 (668)
T ss_pred             EeccccC-CCCCeeEEE
Confidence            8888887 666655433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.95  E-value=1.4e-25  Score=232.61  Aligned_cols=257  Identities=19%  Similarity=0.239  Sum_probs=188.5

Q ss_pred             ccceEeeccCCC-ceeEEeeeCCCccEEcCCCCE--EEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCE
Q 039497          311 TIPHLEPVASPV-KELRMLRLNGSFPSFSPDGGL--IVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKH  386 (642)
Q Consensus       311 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~  386 (642)
                      ..+|+.+.++.. ..++........|.|||||++  ++|++.+.+..+||++++++++.++++. .+....+.|||||++
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            345666665543 223222223367899999987  5568887888999999999999888887 556678999999999


Q ss_pred             EEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEE
Q 039497          387 VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD  466 (642)
Q Consensus       387 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d  466 (642)
                      |+|+...    .+...+.+..++.  +.  ..++     ..++++.........+.|||||++|+|.+.+++..+||+++
T Consensus       245 Laf~s~~----~g~~di~~~~~~~--~~--g~~g-----~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        245 LAFISDR----YGNPDLFIQSFSL--ET--GAIG-----KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             EEEEECC----CCCcceeEEEeec--cc--CCCC-----cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            9999853    1122333322232  10  0012     45666654323456799999999999999888888999998


Q ss_pred             CCC-CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccccc
Q 039497          467 AVN-GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN  545 (642)
Q Consensus       467 ~~~-g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~  545 (642)
                      +.. +..   .+.++........+.|||||++|+|.....     +..+|+++|+++++.++++...  .       ...
T Consensus       312 ~~~~g~~---~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-----g~~~I~v~dl~~g~~~~Lt~~~--~-------~~~  374 (428)
T PRK01029        312 IDPEGQS---PRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-----GVRQICVYDLATGRDYQLTTSP--E-------NKE  374 (428)
T ss_pred             Ccccccc---eEEeccCCCCccceeECCCCCEEEEEEcCC-----CCcEEEEEECCCCCeEEccCCC--C-------Ccc
Confidence            853 222   477776655667899999999999998754     3467999999999998887532  1       246


Q ss_pred             ceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCC
Q 039497          546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN  611 (642)
Q Consensus       546 ~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg  611 (642)
                      .+.|||||+.|+|.+...+.              ..||.+++++++.++|+...+....|+|||-.
T Consensus       375 ~p~wSpDG~~L~f~~~~~g~--------------~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        375 SPSWAIDSLHLVYSAGNSNE--------------SELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             ceEECCCCCEEEEEECCCCC--------------ceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            79999999999998876543              38999999999999999877777899999854

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.94  E-value=4.9e-25  Score=228.49  Aligned_cols=265  Identities=20%  Similarity=0.259  Sum_probs=190.7

Q ss_pred             cceEEEEeecCC----ceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCe--EEEEEccCCCcceEEEcCC
Q 039497            4 KGTIVFTTVGRP----YYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQT--IAFISERSGSPRIYQTRPG   77 (642)
Q Consensus         4 ~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~--laf~~~~~g~~~l~~~~~~   77 (642)
                      +++|||+.....    .+...||+++..|     +.+++||...+....|+|| |||+.  ++|++.+.|..+       
T Consensus       146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG-----~~~~~lt~~~~~~~sP~wS-PDG~~~~~~y~S~~~g~~~-------  212 (428)
T PRK01029        146 SGKIIFSLSTTNSDTELKQGELWSVDYDG-----QNLRPLTQEHSLSITPTWM-HIGSGFPYLYVSYKLGVPK-------  212 (428)
T ss_pred             cCEEEEEEeeCCcccccccceEEEEcCCC-----CCceEcccCCCCcccceEc-cCCCceEEEEEEccCCCce-------
Confidence            688999955321    1246899999999     9999999998889999999 99987  555776555443       


Q ss_pred             CCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEE
Q 039497           78 SSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVA  157 (642)
Q Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~  157 (642)
                                                                  ||++++.+|+.++|+........|+|||||++|||.
T Consensus       213 --------------------------------------------I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~  248 (428)
T PRK01029        213 --------------------------------------------IFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFI  248 (428)
T ss_pred             --------------------------------------------EEEEECCCCCceEeecCCCCccceEECCCCCEEEEE
Confidence                                                        555567777778888776667789999999999999


Q ss_pred             ecCCCCCCCCCCCCeeeEEEE--EecC---CCceeEeecC-C--CcceEeeCCe-EEEEEecCCCceEEEEEecCCCccc
Q 039497          158 SYESRPWPGEFHELNTDIVVF--QESD---PNKRVIVCER-G--GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEF  228 (642)
Q Consensus       158 ~~~~~~~~~~~~~~~~~l~~~--~~~~---g~~~~l~~~~-~--~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~  228 (642)
                      ....         +..++|+.  ++.+   ++.++++... +  ..|.|||||+ ++|+. ..+|..+||.++..+... 
T Consensus       249 s~~~---------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s-~~~g~~~ly~~~~~~~g~-  317 (428)
T PRK01029        249 SDRY---------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS-NKDGRPRIYIMQIDPEGQ-  317 (428)
T ss_pred             ECCC---------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE-CCCCCceEEEEECccccc-
Confidence            8654         34467774  5554   4667787543 2  4689999995 66666 556778999998753210 


Q ss_pred             ccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCC
Q 039497          229 LGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEG  308 (642)
Q Consensus       229 ~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~  308 (642)
                           ..++++........++|||||++|+|+....+  ...|+++|+..+.              .             
T Consensus       318 -----~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g--~~~I~v~dl~~g~--------------~-------------  363 (428)
T PRK01029        318 -----SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG--VRQICVYDLATGR--------------D-------------  363 (428)
T ss_pred             -----ceEEeccCCCCccceeECCCCCEEEEEEcCCC--CcEEEEEECCCCC--------------e-------------
Confidence                 45677766555678999999999999765543  3467777662211              0             


Q ss_pred             CcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCC
Q 039497          309 QSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTE  384 (642)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg  384 (642)
                                    ..++........+.|+|||+.|+|.....+...||++++++++.++++. .+....+.|||-.
T Consensus       364 --------------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        364 --------------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             --------------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence                          0000000112357999999999998776677899999999999888876 4557789999854

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.94  E-value=1.4e-24  Score=226.31  Aligned_cols=246  Identities=15%  Similarity=0.196  Sum_probs=189.0

Q ss_pred             cceEeeccCCCc-eeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEE
Q 039497          312 IPHLEPVASPVK-ELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIY  389 (642)
Q Consensus       312 ~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~  389 (642)
                      .+|+.+.++... .++........|.|||||++|+|.+...+..+|+++++++++.+.+.. .+....+.|||||++|+|
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~  259 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF  259 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence            456666555432 222111123578999999999998766677899999999998777765 455678999999999999


Q ss_pred             EEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497          390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN  469 (642)
Q Consensus       390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~  469 (642)
                      +...      .+...||.++.  +     ++     ..++++... .....+.|||||++|+|.+.+.+..+||++++.+
T Consensus       260 ~~~~------~g~~~I~~~d~--~-----tg-----~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~  320 (429)
T PRK03629        260 ALSK------TGSLNLYVMDL--A-----SG-----QIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING  320 (429)
T ss_pred             EEcC------CCCcEEEEEEC--C-----CC-----CEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence            8642      33334555554  2     33     667777665 5677899999999999999888888999999998


Q ss_pred             CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE
Q 039497          470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF  549 (642)
Q Consensus       470 g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  549 (642)
                      |+.    ++++........+.|||||++|+|.+...     +..+|+++|+++++.+.++... .         ...+.|
T Consensus       321 g~~----~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-----g~~~I~~~dl~~g~~~~Lt~~~-~---------~~~p~~  381 (429)
T PRK03629        321 GAP----QRITWEGSQNQDADVSSDGKFMVMVSSNG-----GQQHIAKQDLATGGVQVLTDTF-L---------DETPSI  381 (429)
T ss_pred             CCe----EEeecCCCCccCEEECCCCCEEEEEEccC-----CCceEEEEECCCCCeEEeCCCC-C---------CCCceE
Confidence            874    77776555556789999999999988654     3467999999999988887422 1         247899


Q ss_pred             cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497          550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP  609 (642)
Q Consensus       550 S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~  609 (642)
                      ||||+.|+|.+.+++.              ..|++++++|+..++|+.+.+....|+|||
T Consensus       382 SpDG~~i~~~s~~~~~--------------~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        382 APNGTMVIYSSSQGMG--------------SVLNLVSTDGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCCCEEEEEEcCCCc--------------eEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence            9999999999987653              279999999999999988777788999997

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.94  E-value=3.1e-24  Score=223.93  Aligned_cols=226  Identities=25%  Similarity=0.391  Sum_probs=181.7

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..++|||||++|+|.+...+..+||++|+.+++.+++.. .+....+.|||||++|++...      .++..+||.++. 
T Consensus       199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~------~~g~~~Iy~~d~-  271 (427)
T PRK02889        199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALS------RDGNSQIYTVNA-  271 (427)
T ss_pred             ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEc------cCCCceEEEEEC-
Confidence            578999999999998876667889999999998777764 555678999999999998764      255678888876 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                       +     ++     ..++++... .....+.|||||++|+|.+++.+..+||.+++.+++.    +.++........+.|
T Consensus       272 -~-----~~-----~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~----~~lt~~g~~~~~~~~  335 (427)
T PRK02889        272 -D-----GS-----GLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA----QRVTFTGSYNTSPRI  335 (427)
T ss_pred             -C-----CC-----CcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce----EEEecCCCCcCceEE
Confidence             3     33     567777655 5567799999999999999888888999999987763    666544344557899


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      ||||++|+|.+..+     +..+|+++|+.+++.+.++...          ....+.|||||+.|+|.+.+++..     
T Consensus       336 SpDG~~Ia~~s~~~-----g~~~I~v~d~~~g~~~~lt~~~----------~~~~p~~spdg~~l~~~~~~~g~~-----  395 (427)
T PRK02889        336 SPDGKLLAYISRVG-----GAFKLYVQDLATGQVTALTDTT----------RDESPSFAPNGRYILYATQQGGRS-----  395 (427)
T ss_pred             CCCCCEEEEEEccC-----CcEEEEEEECCCCCeEEccCCC----------CccCceECCCCCEEEEEEecCCCE-----
Confidence            99999999988764     3468999999999888876432          125789999999999999877643     


Q ss_pred             CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497          572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG  610 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d  610 (642)
                               .|+.+++++...++++...+....|+|||-
T Consensus       396 ---------~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        396 ---------VLAAVSSDGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ---------EEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence                     799999988778888776677889999983

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.94  E-value=3.5e-24  Score=224.76  Aligned_cols=228  Identities=27%  Similarity=0.425  Sum_probs=180.9

Q ss_pred             CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          332 GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       332 ~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ...+.|||||++|+|.+...+..+||++++.+++.++++. .+....+.|||||++|+|....      ++...||.++.
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~------~g~~~Iy~~d~  277 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQ------GGNTDIYTMDL  277 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEec------CCCceEEEEEC
Confidence            3578999999999999876677899999999998877765 5566789999999999988642      44566777766


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                        +     ++     ..++|+... .....+.|||||++|+|.+.+.+..+||++|+.+++    .+.++........+.
T Consensus       278 --~-----~~-----~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~~~~~~~  340 (435)
T PRK05137        278 --R-----SG-----TTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGGRYSTPV  340 (435)
T ss_pred             --C-----CC-----ceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCCcccCeE
Confidence              3     33     667787766 566779999999999999988888899999998777    478876555567799


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      |||||++|+|.....     +..+|+++|++++..+.++.. .         ....+.|||||+.|+|.+...+..    
T Consensus       341 ~SpdG~~ia~~~~~~-----~~~~i~~~d~~~~~~~~lt~~-~---------~~~~p~~spDG~~i~~~~~~~~~~----  401 (435)
T PRK05137        341 WSPRGDLIAFTKQGG-----GQFSIGVMKPDGSGERILTSG-F---------LVEGPTWAPNGRVIMFFRQTPGSG----  401 (435)
T ss_pred             ECCCCCEEEEEEcCC-----CceEEEEEECCCCceEeccCC-C---------CCCCCeECCCCCEEEEEEccCCCC----
Confidence            999999999988654     346899999988877766542 1         236799999999999988765320    


Q ss_pred             CCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497          571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP  609 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~  609 (642)
                             ....||.++++++..++|+. .+....|+|||
T Consensus       402 -------~~~~L~~~dl~g~~~~~l~~-~~~~~~p~Wsp  432 (435)
T PRK05137        402 -------GAPKLYTVDLTGRNEREVPT-PGDASDPAWSP  432 (435)
T ss_pred             -------CcceEEEEECCCCceEEccC-CCCccCcccCC
Confidence                   01379999999988888885 45678999987

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.94  E-value=6.6e-24  Score=218.27  Aligned_cols=248  Identities=18%  Similarity=0.184  Sum_probs=187.1

Q ss_pred             ccceEeeccCCCceeEEeeeCCCccEEcCCCCE-EEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEE
Q 039497          311 TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGL-IVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVI  388 (642)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~  388 (642)
                      ..+++.+.++...+..........|.|||||++ ++|.+...+..+||++|+.+++.++++. .+....+.|||||++|+
T Consensus       169 ~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la  248 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL  248 (419)
T ss_pred             ceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence            345555555553332122112246899999996 6666665457899999999999888876 44456789999999999


Q ss_pred             EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497          389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV  468 (642)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~  468 (642)
                      |....      .+...||.++.  +     ++     ..++|+... .....+.|||||++|+|.+++.+..+||++++.
T Consensus       249 ~~~~~------~g~~~Iy~~dl--~-----~g-----~~~~LT~~~-~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~  309 (419)
T PRK04043        249 LTMAP------KGQPDIYLYDT--N-----TK-----TLTQITNYP-GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN  309 (419)
T ss_pred             EEEcc------CCCcEEEEEEC--C-----CC-----cEEEcccCC-CccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence            98753      34566777765  3     34     678888766 556678999999999999999888999999999


Q ss_pred             CCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC-CceeEEEEeCCCCceEEeeecCCCCCCCcccccccce
Q 039497          469 NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV-EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV  547 (642)
Q Consensus       469 ~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~  547 (642)
                      +|+.    ++++.....  .+.|||||++|+|.......... +..+||++|++++..+.|+....          ...+
T Consensus       310 ~g~~----~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~----------~~~p  373 (419)
T PRK04043        310 SGSV----EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV----------NQFP  373 (419)
T ss_pred             CCCe----EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC----------cCCe
Confidence            8884    777754222  46999999999999875431111 23689999999999999886432          2469


Q ss_pred             EEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEE
Q 039497          548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW  607 (642)
Q Consensus       548 ~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~  607 (642)
                      .|||||+.|+|.+..++.              ..|+.++++|....+|....+.+..|+|
T Consensus       374 ~~SPDG~~I~f~~~~~~~--------------~~L~~~~l~g~~~~~l~~~~g~~~~p~W  419 (419)
T PRK04043        374 RFSSDGGSIMFIKYLGNQ--------------SALGIIRLNYNKSFLFPLKVGKIQSIDW  419 (419)
T ss_pred             EECCCCCEEEEEEccCCc--------------EEEEEEecCCCeeEEeecCCCccCCCCC
Confidence            999999999999887654              3899999999888888876777788877

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.94  E-value=7.9e-24  Score=221.37  Aligned_cols=225  Identities=20%  Similarity=0.274  Sum_probs=180.2

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..+.|||||++|+|.....+..+||++|+++++.++++. .+....+.|||||++|+|+...      ++...||.++. 
T Consensus       221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~------~g~~~Iy~~dl-  293 (448)
T PRK04792        221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSK------DGQPEIYVVDI-  293 (448)
T ss_pred             cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeC------CCCeEEEEEEC-
Confidence            578999999999998876677899999999988777765 4445688999999999998642      45566777766 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                       +     ++     ..++++... .....+.|||||++|+|.+.+.+..+||++++.+|+.    +.|+........+.|
T Consensus       294 -~-----tg-----~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----~~Lt~~g~~~~~~~~  357 (448)
T PRK04792        294 -A-----TK-----ALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----SRLTFEGEQNLGGSI  357 (448)
T ss_pred             -C-----CC-----CeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEEecCCCCCcCeeE
Confidence             3     33     667777665 5567799999999999999888888999999998884    777643334456899


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      ||||++|+|.+...     +..+|+++|+++++.+.++....          ...+.|+|||+.|+|.+..++..     
T Consensus       358 SpDG~~l~~~~~~~-----g~~~I~~~dl~~g~~~~lt~~~~----------d~~ps~spdG~~I~~~~~~~g~~-----  417 (448)
T PRK04792        358 TPDGRSMIMVNRTN-----GKFNIARQDLETGAMQVLTSTRL----------DESPSVAPNGTMVIYSTTYQGKQ-----  417 (448)
T ss_pred             CCCCCEEEEEEecC-----CceEEEEEECCCCCeEEccCCCC----------CCCceECCCCCEEEEEEecCCce-----
Confidence            99999999987654     45679999999998887764321          23679999999999999876542     


Q ss_pred             CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497          572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP  609 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~  609 (642)
                               .||.++.+++..++++...+....|+|||
T Consensus       418 ---------~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        418 ---------VLAAVSIDGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             ---------EEEEEECCCCceEECcCCCCCcCCCccCC
Confidence                     79999999988888987767778999998

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.94  E-value=4.9e-24  Score=222.12  Aligned_cols=259  Identities=18%  Similarity=0.304  Sum_probs=192.9

Q ss_pred             ceEEEEeec-CCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccc
Q 039497            5 GTIVFTTVG-RPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTEL   83 (642)
Q Consensus         5 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~   83 (642)
                      ++|||+... +..+...||+++..|     ...++||.+......|+|| |||++|||.+...+..              
T Consensus       164 ~riayv~~~~~~~~~~~l~~~d~dg-----~~~~~lt~~~~~~~~p~wS-PDG~~la~~s~~~g~~--------------  223 (429)
T PRK03629        164 TRIAYVVQTNGGQFPYELRVSDYDG-----YNQFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRS--------------  223 (429)
T ss_pred             CeEEEEEeeCCCCcceeEEEEcCCC-----CCCEEeecCCCceeeeEEc-CCCCEEEEEEecCCCc--------------
Confidence            678999663 223456899999999     8899999998899999999 9999999987543333              


Q ss_pred             cCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCC
Q 039497           84 LPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRP  163 (642)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~  163 (642)
                                                           +||++++.+|+.++|+........|+|||||++|||.....  
T Consensus       224 -------------------------------------~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~--  264 (429)
T PRK03629        224 -------------------------------------ALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT--  264 (429)
T ss_pred             -------------------------------------EEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC--
Confidence                                                 35555667777777776655566799999999999986543  


Q ss_pred             CCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCC
Q 039497          164 WPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP  240 (642)
Q Consensus       164 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~  240 (642)
                             +..+||++++++++.++++....  ..+.|+|||+ ++|+. +..+..+||.+++.++        ..++++.
T Consensus       265 -------g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s-~~~g~~~Iy~~d~~~g--------~~~~lt~  328 (429)
T PRK03629        265 -------GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTS-DQAGRPQVYKVNINGG--------APQRITW  328 (429)
T ss_pred             -------CCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEe-CCCCCceEEEEECCCC--------CeEEeec
Confidence                   34579999999999998887543  4689999996 55666 5567789999999988        6677766


Q ss_pred             CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497          241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS  320 (642)
Q Consensus       241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~  320 (642)
                      .+.....+.|||||++|++.....+  ...++++|+..+.                                        
T Consensus       329 ~~~~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~----------------------------------------  366 (429)
T PRK03629        329 EGSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGG----------------------------------------  366 (429)
T ss_pred             CCCCccCEEECCCCCEEEEEEccCC--CceEEEEECCCCC----------------------------------------
Confidence            5545567899999999999765433  2356666652110                                        


Q ss_pred             CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeec
Q 039497          321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSP  382 (642)
Q Consensus       321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~sp  382 (642)
                       ...++ .......+.|||||++|+|.....+...|+++++++...+.+.. .+.+..++|||
T Consensus       367 -~~~Lt-~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        367 -VQVLT-DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             -eEEeC-CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence             00000 00122367999999999998876666789999999988777765 56678899997

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.93  E-value=1.3e-23  Score=220.19  Aligned_cols=225  Identities=24%  Similarity=0.332  Sum_probs=177.7

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..+.|||||++|+|.+...+..+||++++++++.+++.. .+....+.|||||++|+|....      ++...||.++. 
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~------~g~~~Iy~~d~-  279 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSR------DGNPEIYVMDL-  279 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeC------CCCceEEEEEC-
Confidence            578999999999998876677899999999988777765 4455678999999999987642      33344555554 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                       +     ++     ..++++... .....+.|||||++|+|.+++.+..+||++++.+++.    +.++........++|
T Consensus       280 -~-----~g-----~~~~lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~----~~lt~~g~~~~~~~~  343 (433)
T PRK04922        280 -G-----SR-----QLTRLTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA----ERLTFQGNYNARASV  343 (433)
T ss_pred             -C-----CC-----CeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe----EEeecCCCCccCEEE
Confidence             2     33     567777655 4556799999999999999888888999999988874    777654444557899


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      ||||++|+|.+...     +..+|+++|+.+++.+.++... .         ...+.|||||+.|+|.+...+.      
T Consensus       344 SpDG~~Ia~~~~~~-----~~~~I~v~d~~~g~~~~Lt~~~-~---------~~~p~~spdG~~i~~~s~~~g~------  402 (433)
T PRK04922        344 SPDGKKIAMVHGSG-----GQYRIAVMDLSTGSVRTLTPGS-L---------DESPSFAPNGSMVLYATREGGR------  402 (433)
T ss_pred             CCCCCEEEEEECCC-----CceeEEEEECCCCCeEECCCCC-C---------CCCceECCCCCEEEEEEecCCc------
Confidence            99999999987643     3458999999999888777532 1         2468999999999999987543      


Q ss_pred             CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497          572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP  609 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~  609 (642)
                              ..||.++++++..++|+...+....|+|||
T Consensus       403 --------~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        403 --------GVLAAVSTDGRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             --------eEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence                    389999999988888987767778999987

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.93  E-value=2e-23  Score=219.60  Aligned_cols=226  Identities=18%  Similarity=0.283  Sum_probs=179.5

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..+.|||||++|+|++...+..+||++++++++.+++.. .+....+.|||||++|+|....      .+...||.++. 
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~------~g~~~Iy~~d~-  274 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSK------DGNPEIYVMDL-  274 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEcc------CCCceEEEEEC-
Confidence            467999999999998876677899999999998877765 4455679999999999988742      33455666665 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                       +     ++     ..++++... .....+.|||||++|+|.+++.+..+||++++.+|+.    ++++........+.|
T Consensus       275 -~-----~~-----~~~~lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~lt~~~~~~~~~~~  338 (430)
T PRK00178        275 -A-----SR-----QLSRVTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERVTFVGNYNARPRL  338 (430)
T ss_pred             -C-----CC-----CeEEcccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeecCCCCccceEE
Confidence             3     33     567777665 5667799999999999999888888999999998884    666644444557899


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      ||||++|+|.....     +..+|+++|+++++.+.++....          ...+.|||||+.|+|++.+++.      
T Consensus       339 Spdg~~i~~~~~~~-----~~~~l~~~dl~tg~~~~lt~~~~----------~~~p~~spdg~~i~~~~~~~g~------  397 (430)
T PRK00178        339 SADGKTLVMVHRQD-----GNFHVAAQDLQRGSVRILTDTSL----------DESPSVAPNGTMLIYATRQQGR------  397 (430)
T ss_pred             CCCCCEEEEEEccC-----CceEEEEEECCCCCEEEccCCCC----------CCCceECCCCCEEEEEEecCCc------
Confidence            99999999998654     34579999999998888875321          2367999999999999987654      


Q ss_pred             CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497          572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG  610 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d  610 (642)
                              ..||.++++++..++|+...+....|+|||-
T Consensus       398 --------~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        398 --------GVLMLVSINGRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             --------eEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence                    3899999999888788866677789999973

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.92  E-value=4.7e-23  Score=216.28  Aligned_cols=241  Identities=23%  Similarity=0.291  Sum_probs=181.8

Q ss_pred             cceEEEEeecCC--ceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcc
Q 039497            4 KGTIVFTTVGRP--YYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKT   81 (642)
Q Consensus         4 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~   81 (642)
                      ..+|+|+.....  .....||+++..|     ...++||.+......|+|| |||++|||.+...|..+||+++..+...
T Consensus       165 ~~~iafv~~~~~~~~~~~~l~~~d~dg-----~~~~~lt~~~~~v~~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~~  238 (435)
T PRK05137        165 DTRIVYVAESGPKNKRIKRLAIMDQDG-----ANVRYLTDGSSLVLTPRFS-PNRQEITYMSYANGRPRVYLLDLETGQR  238 (435)
T ss_pred             CCeEEEEEeeCCCCCcceEEEEECCCC-----CCcEEEecCCCCeEeeEEC-CCCCEEEEEEecCCCCEEEEEECCCCcE
Confidence            457999966322  1245999999998     8899999999999999999 9999999999877888999997655444


Q ss_pred             cccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCC
Q 039497           82 ELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYES  161 (642)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~  161 (642)
                      ..+............+.+|+.|+|+...+..       .+||.+++.+++.++|+........|+|||||++|+|.++..
T Consensus       239 ~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~-------~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~  311 (435)
T PRK05137        239 ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGN-------TDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS  311 (435)
T ss_pred             EEeecCCCcccCcEECCCCCEEEEEEecCCC-------ceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence            4444333322222334478889888764321       279999999999999998887778899999999999998654


Q ss_pred             CCCCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceee
Q 039497          162 RPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV  238 (642)
Q Consensus       162 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l  238 (642)
                               +..+||++++.+++.++++...+  ..+.|||||+ ++|+. ...+...|+.+++.++        ....+
T Consensus       312 ---------g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~-~~~~~~~i~~~d~~~~--------~~~~l  373 (435)
T PRK05137        312 ---------GSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTK-QGGGQFSIGVMKPDGS--------GERIL  373 (435)
T ss_pred             ---------CCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEE-cCCCceEEEEEECCCC--------ceEec
Confidence                     45689999999999999987543  3579999996 44554 4455679999998776        44555


Q ss_pred             CCCCCccccceeecCCcEEEEEEeccCCce-eeEEEEEe
Q 039497          239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNF-RHIEIYDL  276 (642)
Q Consensus       239 ~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~-~~i~~~d~  276 (642)
                      +.. .....+.|||||+.|+|.....+... ..++++|+
T Consensus       374 t~~-~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        374 TSG-FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             cCC-CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            543 34678999999999999876543322 46788877

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.92  E-value=2.4e-20  Score=181.40  Aligned_cols=491  Identities=12%  Similarity=0.069  Sum_probs=275.2

Q ss_pred             CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcC-CCCcc
Q 039497            3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRP-GSSKT   81 (642)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~-~g~~~   81 (642)
                      .|+.|+|.      .+.-+++.++.- +   ..+...|.|....--+++| |.|-++| ..+..|..+||...- +.-.-
T Consensus        29 kgd~ilY~------nGksv~ir~i~~-~---~~~~iYtEH~~~vtVAkyS-PsG~yiA-SGD~sG~vRIWdtt~~~hiLK   96 (603)
T KOG0318|consen   29 KGDNILYT------NGKSVIIRNIDN-P---ASVDIYTEHAHQVTVAKYS-PSGFYIA-SGDVSGKVRIWDTTQKEHILK   96 (603)
T ss_pred             CCCeEEEe------CCCEEEEEECCC-c---cceeeeccccceeEEEEeC-CCceEEe-ecCCcCcEEEEeccCcceeee
Confidence            57889999      788899999985 3   4578899999999999999 9999999 677789999998721 11000


Q ss_pred             cccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCc-EEEEEecC
Q 039497           82 ELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGK-FIAVASYE  160 (642)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~-~la~~~~~  160 (642)
                      .......+.--.-....++++|+.+..+...      .+..+..+.- ...-.++.+........|-|.-- +|+..+++
T Consensus        97 nef~v~aG~I~Di~Wd~ds~RI~avGEGrer------fg~~F~~DSG-~SvGei~GhSr~ins~~~KpsRPfRi~T~sdD  169 (603)
T KOG0318|consen   97 NEFQVLAGPIKDISWDFDSKRIAAVGEGRER------FGHVFLWDSG-NSVGEITGHSRRINSVDFKPSRPFRIATGSDD  169 (603)
T ss_pred             eeeeecccccccceeCCCCcEEEEEecCccc------eeEEEEecCC-CccceeeccceeEeeeeccCCCceEEEeccCC
Confidence            0011000000000123378888888775432      3466665532 22333444333333444444333 25555554


Q ss_pred             CCCCCCCCCCCeeeEEEEEecCCCceeEeec---CC---CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCcc
Q 039497          161 SRPWPGEFHELNTDIVVFQESDPNKRVIVCE---RG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIA  234 (642)
Q Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~  234 (642)
                      .            .+-++   .|.+.+....   +.   ....|+|||..+++. +.||  +++.+|-.+++       +
T Consensus       170 n------------~v~ff---eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~-gsDg--ki~iyDGktge-------~  224 (603)
T KOG0318|consen  170 N------------TVAFF---EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA-GSDG--KIYIYDGKTGE-------K  224 (603)
T ss_pred             C------------eEEEe---eCCCeeeeecccccccceeeEEECCCCCeEEEe-cCCc--cEEEEcCCCcc-------E
Confidence            4            22222   2333333321   11   245999999888887 5677  88888888874       4


Q ss_pred             ceeeC---CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec---------------------------------
Q 039497          235 PTRVT---PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL---------------------------------  278 (642)
Q Consensus       235 ~~~l~---~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~---------------------------------  278 (642)
                      ...+.   .+...++.++||||+++++.++.++     .+.+||+.+                                 
T Consensus       225 vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk-----t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~  299 (603)
T KOG0318|consen  225 VGELEDSDAHKGSIFALSWSPDSTQFLTVSADK-----TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS  299 (603)
T ss_pred             EEEecCCCCccccEEEEEECCCCceEEEecCCc-----eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence            55555   4566888999999999999976555     788888821                                 


Q ss_pred             ------------------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCC--CccEEc
Q 039497          279 ------------------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNG--SFPSFS  338 (642)
Q Consensus       279 ------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s  338 (642)
                                        +++-.+..+..+||+++|+....+|-      ...|.... +....+.-.....  ..+.-+
T Consensus       300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~------I~~W~~~~-g~~~~~~g~~h~nqI~~~~~~  372 (603)
T KOG0318|consen  300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH------INSWDSGS-GTSDRLAGKGHTNQIKGMAAS  372 (603)
T ss_pred             cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce------EEEEecCC-ccccccccccccceEEEEeec
Confidence                              12222333344444444444333332      11111100 0000000000000  001111


Q ss_pred             CCCCEEEEEecCCCceeEEEEECCCCCeeE---EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497          339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWT---LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS  415 (642)
Q Consensus       339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~---l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  415 (642)
                      ..+. |+..+.   ...|++.++.++....   +....-...++..+|+..++.+.        ...+.|..- .     
T Consensus       373 ~~~~-~~t~g~---Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~--------~~~iv~l~~-~-----  434 (603)
T KOG0318|consen  373 ESGE-LFTIGW---DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC--------ISDIVLLQD-Q-----  434 (603)
T ss_pred             CCCc-EEEEec---CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe--------cCcEEEEec-C-----
Confidence            1121 222211   2345555543322111   11122233566777776666665        233333321 1     


Q ss_pred             CCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC
Q 039497          416 DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG  495 (642)
Q Consensus       416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG  495 (642)
                          +     ....+...  ......+++||++.++.... ++  .|+++.+.+++. .+...+..+.+.+..++|||||
T Consensus       435 ----~-----~~~~~~~~--y~~s~vAv~~~~~~vaVGG~-Dg--kvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~  499 (603)
T KOG0318|consen  435 ----T-----KVSSIPIG--YESSAVAVSPDGSEVAVGGQ-DG--KVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDG  499 (603)
T ss_pred             ----C-----cceeeccc--cccceEEEcCCCCEEEEecc-cc--eEEEEEecCCcc-cceeeeecccCCceEEEECCCC
Confidence                1     22222221  34567899999999987764 34  466666665442 1134566677888999999999


Q ss_pred             CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCC
Q 039497          496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ  575 (642)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~  575 (642)
                      .+|+.......        +.+||+.+.+.....-.-+..       .+..++|||+.+.++..+-+.            
T Consensus       500 ~yla~~Da~rk--------vv~yd~~s~~~~~~~w~FHta-------kI~~~aWsP~n~~vATGSlDt------------  552 (603)
T KOG0318|consen  500 AYLAAGDASRK--------VVLYDVASREVKTNRWAFHTA-------KINCVAWSPNNKLVATGSLDT------------  552 (603)
T ss_pred             cEEEEeccCCc--------EEEEEcccCceecceeeeeee-------eEEEEEeCCCceEEEeccccc------------
Confidence            99988876654        899999887663211111223       567899999999888877664            


Q ss_pred             CCCCCcEEEEEcCCCc--eeeccCCCCCCCCcEEecCCceE
Q 039497          576 FQPYGDLYVVKLDGSG--LRRLTWNGYENGTPAWHPGNQLD  614 (642)
Q Consensus       576 ~~~~~~l~~~~~~~~~--~~~lt~~~~~~~~~~~s~dg~~~  614 (642)
                           .|+.|+++...  ++-.-.+...+..+.|-.+..++
T Consensus       553 -----~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvv  588 (603)
T KOG0318|consen  553 -----NVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVV  588 (603)
T ss_pred             -----eEEEEEccChhhheEeccccccCceeEEEecCceEE
Confidence                 56666665533  33333455557888997665533

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.92  E-value=1.1e-22  Score=209.35  Aligned_cols=238  Identities=16%  Similarity=0.153  Sum_probs=178.4

Q ss_pred             ceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCe-EEEEEccCCCcceEEEcCCCCcccc
Q 039497            5 GTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQT-IAFISERSGSPRIYQTRPGSSKTEL   83 (642)
Q Consensus         5 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~-laf~~~~~g~~~l~~~~~~g~~~~~   83 (642)
                      .+|+|+.........+||+++..|     ...+++|.+. ....|+|| |||++ ++|++.+.+..+||+++..+...+.
T Consensus       155 ~r~~~v~~~~~~~~~~l~~~d~dg-----~~~~~~~~~~-~~~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~  227 (419)
T PRK04043        155 KRKVVFSKYTGPKKSNIVLADYTL-----TYQKVIVKGG-LNIFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEK  227 (419)
T ss_pred             eeEEEEEEccCCCcceEEEECCCC-----CceeEEccCC-CeEeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEE
Confidence            467777552211356999999999     8888898875 88899999 99996 7777765567899999766544455


Q ss_pred             cCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCC
Q 039497           84 LPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRP  163 (642)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~  163 (642)
                      +............+.+|++|+|+......       .+||.+++.+++.++||.....+..|.|||||++|+|.+++.  
T Consensus       228 lt~~~g~~~~~~~SPDG~~la~~~~~~g~-------~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~--  298 (419)
T PRK04043        228 IASSQGMLVVSDVSKDGSKLLLTMAPKGQ-------PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL--  298 (419)
T ss_pred             EecCCCcEEeeEECCCCCEEEEEEccCCC-------cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC--
Confidence            54433332222344478899998765321       389999999999999998877677899999999999998765  


Q ss_pred             CCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeCCe-EEEEEecCC-----CceEEEEEecCCCcccccCCcccee
Q 039497          164 WPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDST-IYFHRQADD-----GWWSIFRVSFPENLEFLGFPIAPTR  237 (642)
Q Consensus       164 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspdg~-~~~~~~~~~-----g~~~l~~~~~~~~~~~~~~~~~~~~  237 (642)
                             +..+||++++.+|+.++++......+.|||||+ ++|+....+     +..+|+.+++.++        ..++
T Consensus       299 -------g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--------~~~~  363 (419)
T PRK04043        299 -------GYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--------YIRR  363 (419)
T ss_pred             -------CCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--------CeEE
Confidence                   456999999999999899875434579999995 666653221     3479999999988        6788


Q ss_pred             eCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497          238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL  276 (642)
Q Consensus       238 l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~  276 (642)
                      |+..+ ....+.|||||+.|+|....++  ...+.++++
T Consensus       364 LT~~~-~~~~p~~SPDG~~I~f~~~~~~--~~~L~~~~l  399 (419)
T PRK04043        364 LTANG-VNQFPRFSSDGGSIMFIKYLGN--QSALGIIRL  399 (419)
T ss_pred             CCCCC-CcCCeEECCCCCEEEEEEccCC--cEEEEEEec
Confidence            88764 3447999999999999876533  335666655

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.91  E-value=3.8e-22  Score=208.62  Aligned_cols=219  Identities=20%  Similarity=0.260  Sum_probs=172.5

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..+.|||||++|+|.+..++..+|+++|+.+++.+.+.. .+....+.|||||++|+++...      ++...||.++. 
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~------~g~~~Iy~~d~-  279 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSK------DGVLNIYVMGA-  279 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEec------CCcEEEEEEEC-
Confidence            578999999999998876667889999999888766665 4455689999999999998632      45567887776 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                       +     ++     ..++++.+. .....+.|||||++|+|.+.+.+..+||.++..++..    +.+.. ..  ..+.|
T Consensus       280 -~-----~~-----~~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~----~~l~~-~~--~~~~~  340 (429)
T PRK01742        280 -N-----GG-----TPSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA----SLVGG-RG--YSAQI  340 (429)
T ss_pred             -C-----CC-----CeEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe----EEecC-CC--CCccC
Confidence             3     33     667777765 6677899999999999999888889999999887663    55532 22  45789


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      ||||++|++.+...         ++++|+.+++.+.++.. ..         ...+.|||||+.|++.+.+++.      
T Consensus       341 SpDG~~ia~~~~~~---------i~~~Dl~~g~~~~lt~~-~~---------~~~~~~sPdG~~i~~~s~~g~~------  395 (429)
T PRK01742        341 SADGKTLVMINGDN---------VVKQDLTSGSTEVLSST-FL---------DESPSISPNGIMIIYSSTQGLG------  395 (429)
T ss_pred             CCCCCEEEEEcCCC---------EEEEECCCCCeEEecCC-CC---------CCCceECCCCCEEEEEEcCCCc------
Confidence            99999999987633         88999999888776642 22         2468999999999999887654      


Q ss_pred             CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497          572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG  610 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d  610 (642)
                              ..++.++.++...++|+.+.+....|+|||-
T Consensus       396 --------~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        396 --------KVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             --------eEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence                    2566778889889999887777789999984

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.91  E-value=3e-22  Score=209.01  Aligned_cols=229  Identities=24%  Similarity=0.407  Sum_probs=178.4

Q ss_pred             CEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                      .+|+|+....+..+||++|.++...++++. ...+..+.|||||++|+|++..    .+...+.++++..         +
T Consensus       164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~----~~~~~I~~~dl~~---------g  230 (427)
T PRK02889        164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFE----SKKPVVYVHDLAT---------G  230 (427)
T ss_pred             cEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEcc----CCCcEEEEEECCC---------C
Confidence            568998765566899999999888777765 5667899999999999999853    2233455555432         3


Q ss_pred             CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEE
Q 039497          421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~  500 (642)
                           ....++... +....+.|||||++|+|+..+++..+||++|+++++    .++|+........+.|||||++|+|
T Consensus       231 -----~~~~l~~~~-g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~l~f  300 (427)
T PRK02889        231 -----RRRVVANFK-GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG----LRRLTQSSGIDTEPFFSPDGRSIYF  300 (427)
T ss_pred             -----CEEEeecCC-CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC----cEECCCCCCCCcCeEEcCCCCEEEE
Confidence                 556666554 566789999999999998888888899999998777    4888877666778999999999999


Q ss_pred             EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497          501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG  580 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  580 (642)
                      .+++.     +..+||++++++++.++++..+.         ....+.|||||++|+|.+..++.              .
T Consensus       301 ~s~~~-----g~~~Iy~~~~~~g~~~~lt~~g~---------~~~~~~~SpDG~~Ia~~s~~~g~--------------~  352 (427)
T PRK02889        301 TSDRG-----GAPQIYRMPASGGAAQRVTFTGS---------YNTSPRISPDGKLLAYISRVGGA--------------F  352 (427)
T ss_pred             EecCC-----CCcEEEEEECCCCceEEEecCCC---------CcCceEECCCCCEEEEEEccCCc--------------E
Confidence            87654     45689999999888887774321         23468999999999999876543              2


Q ss_pred             cEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCCc
Q 039497          581 DLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLED  622 (642)
Q Consensus       581 ~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~~  622 (642)
                      +|+++++.+++.++++... ....|.|+|||+.++...+.++
T Consensus       353 ~I~v~d~~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g  393 (427)
T PRK02889        353 KLYVQDLATGQVTALTDTT-RDESPSFAPNGRYILYATQQGG  393 (427)
T ss_pred             EEEEEECCCCCeEEccCCC-CccCceECCCCCEEEEEEecCC
Confidence            8999999999999998653 4479999999998877665553

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.91  E-value=9.5e-22  Score=205.71  Aligned_cols=228  Identities=21%  Similarity=0.322  Sum_probs=176.0

Q ss_pred             CEEEEEecCCC---ceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCC
Q 039497          342 GLIVFNHDFEL---NAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDD  417 (642)
Q Consensus       342 ~~l~~~~~~~~---~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  417 (642)
                      .+|+|+....+   ..+|+++|.++...+.++. ...+..+.|||||++|+|++..      .+...||.++.  +    
T Consensus       183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~------~g~~~L~~~dl--~----  250 (448)
T PRK04792        183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFE------NRKAEIFVQDI--Y----  250 (448)
T ss_pred             CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEec------CCCcEEEEEEC--C----
Confidence            56777654332   3689999999988777766 5567889999999999999853      33455666655  2    


Q ss_pred             CCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCE
Q 039497          418 NNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL  497 (642)
Q Consensus       418 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~  497 (642)
                       ++     +.+.++... +....+.|||||++|+|....++..+||++|+++++    .++++........+.|||||++
T Consensus       251 -tg-----~~~~lt~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~~~~~~p~wSpDG~~  319 (448)
T PRK04792        251 -TQ-----VREKVTSFP-GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA----LTRITRHRAIDTEPSWHPDGKS  319 (448)
T ss_pred             -CC-----CeEEecCCC-CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC----eEECccCCCCccceEECCCCCE
Confidence             33     556666554 455679999999999998888888899999999888    4888877666778999999999


Q ss_pred             EEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCC
Q 039497          498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ  577 (642)
Q Consensus       498 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~  577 (642)
                      |+|.+...     +..+||++|+++++.+.++..+.         ....+.|||||++|+|.+...+.            
T Consensus       320 I~f~s~~~-----g~~~Iy~~dl~~g~~~~Lt~~g~---------~~~~~~~SpDG~~l~~~~~~~g~------------  373 (448)
T PRK04792        320 LIFTSERG-----GKPQIYRVNLASGKVSRLTFEGE---------QNLGGSITPDGRSMIMVNRTNGK------------  373 (448)
T ss_pred             EEEEECCC-----CCceEEEEECCCCCEEEEecCCC---------CCcCeeECCCCCEEEEEEecCCc------------
Confidence            99998765     45789999999998888874322         22457999999999998765442            


Q ss_pred             CCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          578 PYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       578 ~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                        .+||.+++++++++.|+... ....|.|+|||++++...+.+
T Consensus       374 --~~I~~~dl~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        374 --FNIARQDLETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             --eEEEEEECCCCCeEEccCCC-CCCCceECCCCCEEEEEEecC
Confidence              38999999999988888653 446899999998886654444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.90  E-value=1.6e-21  Score=204.45  Aligned_cols=228  Identities=25%  Similarity=0.422  Sum_probs=174.1

Q ss_pred             CEEEEEecCC----CceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497          342 GLIVFNHDFE----LNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD  416 (642)
Q Consensus       342 ~~l~~~~~~~----~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  416 (642)
                      .+|+|+....    ...+|+++|.++...++++. ...+..+.|||||++|+|++..    .....+.++++.       
T Consensus       168 ~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~----~~~~~l~~~dl~-------  236 (433)
T PRK04922        168 TRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFE----RGRSAIYVQDLA-------  236 (433)
T ss_pred             ceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecC----CCCcEEEEEECC-------
Confidence            5688865421    24679999999888888876 4567899999999999999853    223344444443       


Q ss_pred             CCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC
Q 039497          417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD  496 (642)
Q Consensus       417 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~  496 (642)
                        ++     ..+.++... +....+.|||||++|+|....++..+||++|+.+|+    +++++........+.|||||+
T Consensus       237 --~g-----~~~~l~~~~-g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~  304 (433)
T PRK04922        237 --TG-----QRELVASFR-GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGK  304 (433)
T ss_pred             --CC-----CEEEeccCC-CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC----eEECccCCCCccceEECCCCC
Confidence              23     556666554 556679999999999998877788899999999888    488887766667899999999


Q ss_pred             EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCC
Q 039497          497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF  576 (642)
Q Consensus       497 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~  576 (642)
                      +|+|.+.+.     +..+||++++++++.++++..+.         ....++|||||++|+|.+..++.           
T Consensus       305 ~l~f~sd~~-----g~~~iy~~dl~~g~~~~lt~~g~---------~~~~~~~SpDG~~Ia~~~~~~~~-----------  359 (433)
T PRK04922        305 SIYFTSDRG-----GRPQIYRVAASGGSAERLTFQGN---------YNARASVSPDGKKIAMVHGSGGQ-----------  359 (433)
T ss_pred             EEEEEECCC-----CCceEEEEECCCCCeEEeecCCC---------CccCEEECCCCCEEEEEECCCCc-----------
Confidence            999998764     34689999999988888875332         23468999999999998765432           


Q ss_pred             CCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       577 ~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                         ..|+++++.++++++|+... ...++.|||||++++...+.+
T Consensus       360 ---~~I~v~d~~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~~  400 (433)
T PRK04922        360 ---YRIAVMDLSTGSVRTLTPGS-LDESPSFAPNGSMVLYATREG  400 (433)
T ss_pred             ---eeEEEEECCCCCeEECCCCC-CCCCceECCCCCEEEEEEecC
Confidence               28999999999999998654 457899999999876554433

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.90  E-value=2.8e-21  Score=203.37  Aligned_cols=228  Identities=24%  Similarity=0.375  Sum_probs=175.9

Q ss_pred             CEEEEEecC----CCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497          342 GLIVFNHDF----ELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD  416 (642)
Q Consensus       342 ~~l~~~~~~----~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  416 (642)
                      ++|+|+...    ....+|+++|.+++..++++. ...+..+.|||||++|+|++..      .....||.++.  +   
T Consensus       163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~------~~~~~l~~~~l--~---  231 (430)
T PRK00178        163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFE------QKRPRIFVQNL--D---  231 (430)
T ss_pred             eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcC------CCCCEEEEEEC--C---
Confidence            568886542    235679999999988777766 4567889999999999998853      23334555544  2   


Q ss_pred             CCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC
Q 039497          417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD  496 (642)
Q Consensus       417 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~  496 (642)
                        ++     ..+.++... +....+.|||||++|+|...+++..+||++|+++++    .++|+........+.|||||+
T Consensus       232 --~g-----~~~~l~~~~-g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~~spDg~  299 (430)
T PRK00178        232 --TG-----RREQITNFE-GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----LSRVTNHPAIDTEPFWGKDGR  299 (430)
T ss_pred             --CC-----CEEEccCCC-CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEcccCCCCcCCeEECCCCC
Confidence              33     566676554 556679999999999999888888899999999887    488887766777899999999


Q ss_pred             EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCC
Q 039497          497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF  576 (642)
Q Consensus       497 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~  576 (642)
                      .|+|.+...     +..+||++++.+++.++++..+.         ....+.|||||++|+|.....+.           
T Consensus       300 ~i~f~s~~~-----g~~~iy~~d~~~g~~~~lt~~~~---------~~~~~~~Spdg~~i~~~~~~~~~-----------  354 (430)
T PRK00178        300 TLYFTSDRG-----GKPQIYKVNVNGGRAERVTFVGN---------YNARPRLSADGKTLVMVHRQDGN-----------  354 (430)
T ss_pred             EEEEEECCC-----CCceEEEEECCCCCEEEeecCCC---------CccceEECCCCCEEEEEEccCCc-----------
Confidence            999998754     45689999999998888875331         23468999999999999865432           


Q ss_pred             CCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       577 ~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                         .+|+++|+.+++.++|+... ....+.|||||++++...+.+
T Consensus       355 ---~~l~~~dl~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~  395 (430)
T PRK00178        355 ---FHVAAQDLQRGSVRILTDTS-LDESPSVAPNGTMLIYATRQQ  395 (430)
T ss_pred             ---eEEEEEECCCCCEEEccCCC-CCCCceECCCCCEEEEEEecC
Confidence               27999999999999998753 446899999999886655443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=4.2e-19  Score=179.73  Aligned_cols=469  Identities=15%  Similarity=0.093  Sum_probs=261.2

Q ss_pred             ecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccccc-CCCEEEEEEeccCCCcccc
Q 039497           39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQIFK  117 (642)
Q Consensus        39 lt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~  117 (642)
                      |.+..-...+..|+ |||..|.+-.   | .+|.+.+........++-..+..+. ..++ +++.++.+.....      
T Consensus        10 llGTvyr~Gnl~ft-~dG~sviSPv---G-Nrvsv~dLknN~S~Tl~~e~~~NI~-~ialSp~g~lllavdE~g------   77 (893)
T KOG0291|consen   10 LLGTVYRAGNLVFT-KDGNSVISPV---G-NRVSVFDLKNNKSYTLPLETRYNIT-RIALSPDGTLLLAVDERG------   77 (893)
T ss_pred             cccceeecCcEEEC-CCCCEEEecc---C-CEEEEEEccCCcceeEEeecCCceE-EEEeCCCceEEEEEcCCC------
Confidence            34455556788899 9999998643   2 2344442222111111110111111 1222 4555555444321      


Q ss_pred             cccceEEEEccCCc-eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee------
Q 039497          118 SWSALYSTDLKASK-FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC------  190 (642)
Q Consensus       118 ~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~------  190 (642)
                         ....+++.... ...... .....+..|||||+.+|.....             .|-+|...+.....+..      
T Consensus        78 ---~~~lvs~~~r~Vlh~f~f-k~~v~~i~fSPng~~fav~~gn-------------~lqiw~~P~~~~~~~~pFvl~r~  140 (893)
T KOG0291|consen   78 ---RALLVSLLSRSVLHRFNF-KRGVGAIKFSPNGKFFAVGCGN-------------LLQIWHAPGEIKNEFNPFVLHRT  140 (893)
T ss_pred             ---cEEEEecccceeeEEEee-cCccceEEECCCCcEEEEEecc-------------eeEEEecCcchhcccCcceEeee
Confidence               22233433322 222222 2234568999999999987533             34555544332211111      


Q ss_pred             cCC-----CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccC
Q 039497          191 ERG-----GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKN  265 (642)
Q Consensus       191 ~~~-----~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~  265 (642)
                      ..+     .++.||.|++++.+. ..|-...||-++...+.       ....+..+...+....|+.|...|+.+..++ 
T Consensus       141 ~~g~fddi~si~Ws~DSr~l~~g-srD~s~rl~~v~~~k~~-------~~~~l~gHkd~VvacfF~~~~~~l~tvskdG-  211 (893)
T KOG0291|consen  141 YLGHFDDITSIDWSDDSRLLVTG-SRDLSARLFGVDGNKNL-------FTYALNGHKDYVVACFFGANSLDLYTVSKDG-  211 (893)
T ss_pred             ecCCccceeEEEeccCCceEEec-cccceEEEEEecccccc-------ceEeccCCCcceEEEEeccCcceEEEEecCc-
Confidence            001     256999999988886 45666677777655442       4556666655565555666666666655444 


Q ss_pred             CceeeEEEEEeecC-----------------------CC-------------------CcccCCeecCCCCEEEEEEeec
Q 039497          266 RNFRHIEIYDLTLN-----------------------PN-------------------FHHYNPFVSANSEFIGYHRFRG  303 (642)
Q Consensus       266 ~~~~~i~~~d~~~~-----------------------~~-------------------~~~~~~~~spDg~~l~~~~~~~  303 (642)
                          .+.+|.....                       .+                   .......+.+.-..|+.. ...
T Consensus       212 ----~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvg-Fss  286 (893)
T KOG0291|consen  212 ----ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVG-FSS  286 (893)
T ss_pred             ----eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEE-ecC
Confidence                3333333100                       00                   000111111111111111 111


Q ss_pred             CCCCCCcccceEeeccCC--CceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEeecCCceeee
Q 039497          304 ESTEGQSTIPHLEPVASP--VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIKDRTAFYNS  379 (642)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~  379 (642)
                      +       ...+..+..-  ...+.+.........|+..|++|+|.+.+  .++|.+|+-....  .++-.+-..+..++
T Consensus       287 G-------~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVweWqsEsYVlKQQgH~~~i~~l~  357 (893)
T KOG0291|consen  287 G-------EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWEWQSESYVLKQQGHSDRITSLA  357 (893)
T ss_pred             C-------eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEEeeccceeeeccccccceeeEE
Confidence            0       0001111110  11111112223456888899999997744  4566666654432  22222245678899


Q ss_pred             eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC--
Q 039497          380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS--  457 (642)
Q Consensus       380 ~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~--  457 (642)
                      +||||+.|+...       +++++++|+...        +.     ....++.+. ..+..+.|+..|+.|+-.+.+.  
T Consensus       358 YSpDgq~iaTG~-------eDgKVKvWn~~S--------gf-----C~vTFteHt-s~Vt~v~f~~~g~~llssSLDGtV  416 (893)
T KOG0291|consen  358 YSPDGQLIATGA-------EDGKVKVWNTQS--------GF-----CFVTFTEHT-SGVTAVQFTARGNVLLSSSLDGTV  416 (893)
T ss_pred             ECCCCcEEEecc-------CCCcEEEEeccC--------ce-----EEEEeccCC-CceEEEEEEecCCEEEEeecCCeE
Confidence            999999998876       488999999865        33     555566655 5566666766666555433211  


Q ss_pred             ---------------------------------------CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEE
Q 039497          458 ---------------------------------------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI  498 (642)
Q Consensus       458 ---------------------------------------g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l  498 (642)
                                                             ...+|++|+++||+.   +..|..+.+.+..+.|+|+|..|
T Consensus       417 RAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql---lDiLsGHEgPVs~l~f~~~~~~L  493 (893)
T KOG0291|consen  417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL---LDILSGHEGPVSGLSFSPDGSLL  493 (893)
T ss_pred             EeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee---eehhcCCCCcceeeEEccccCeE
Confidence                                                   245899999999998   77888888999999999999988


Q ss_pred             EEEecCCCCCCCCceeEEEEeCCCC--ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCC
Q 039497          499 AFSSNRHNPDNVEAFSLYVIKPDGS--GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF  576 (642)
Q Consensus       499 ~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~  576 (642)
                      +-.+-+.+        |.+||+-..  ..+.+...   .       .+..++|+|||+.|++..-++             
T Consensus       494 aS~SWDkT--------VRiW~if~s~~~vEtl~i~---s-------dvl~vsfrPdG~elaVaTldg-------------  542 (893)
T KOG0291|consen  494 ASGSWDKT--------VRIWDIFSSSGTVETLEIR---S-------DVLAVSFRPDGKELAVATLDG-------------  542 (893)
T ss_pred             Eeccccce--------EEEEEeeccCceeeeEeec---c-------ceeEEEEcCCCCeEEEEEecc-------------
Confidence            87775554        777777443  44444331   1       457899999999999988775             


Q ss_pred             CCCCcEEEEEcCCCce-----------------eeccCC----CCCCCCcEEecCCceEEeec
Q 039497          577 QPYGDLYVVKLDGSGL-----------------RRLTWN----GYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       577 ~~~~~l~~~~~~~~~~-----------------~~lt~~----~~~~~~~~~s~dg~~~~~~~  618 (642)
                          +|-.||...+..                 -++|..    +-....+.||+||.++++..
T Consensus       543 ----qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG  601 (893)
T KOG0291|consen  543 ----QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG  601 (893)
T ss_pred             ----eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence                566666543211                 122221    11236789999999998853

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.89  E-value=4.6e-21  Score=200.47  Aligned_cols=254  Identities=19%  Similarity=0.287  Sum_probs=179.9

Q ss_pred             cceEEEEeecC-CceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCccc
Q 039497            4 KGTIVFTTVGR-PYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTE   82 (642)
Q Consensus         4 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~   82 (642)
                      +++|+|+.... ......||+++..|     ...++||.+......|+|| |||++|||++..++..+            
T Consensus       168 ~~ria~v~~~~~~~~~~~i~i~d~dg-----~~~~~lt~~~~~v~~p~wS-PDG~~la~~s~~~~~~~------------  229 (429)
T PRK01742        168 RTRIAYVVQKNGGSQPYEVRVADYDG-----FNQFIVNRSSQPLMSPAWS-PDGSKLAYVSFENKKSQ------------  229 (429)
T ss_pred             CCEEEEEEEEcCCCceEEEEEECCCC-----CCceEeccCCCccccceEc-CCCCEEEEEEecCCCcE------------
Confidence            57899986532 22357999999998     7888999999899999999 99999999875443333            


Q ss_pred             ccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCC
Q 039497           83 LLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESR  162 (642)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~  162 (642)
                                                             ||++++.+++.++++........|+|||||++||+..... 
T Consensus       230 ---------------------------------------i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-  269 (429)
T PRK01742        230 ---------------------------------------LVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD-  269 (429)
T ss_pred             ---------------------------------------EEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecC-
Confidence                                                   4444555555555554444455699999999999986543 


Q ss_pred             CCCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeC
Q 039497          163 PWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT  239 (642)
Q Consensus       163 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~  239 (642)
                              +..+||++++.+++.++++....  ..+.|+|||+ ++|++ ..+|..+||.++..++        ....+.
T Consensus       270 --------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s-~~~g~~~I~~~~~~~~--------~~~~l~  332 (429)
T PRK01742        270 --------GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTS-DRSGSPQVYRMSASGG--------GASLVG  332 (429)
T ss_pred             --------CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEE-CCCCCceEEEEECCCC--------CeEEec
Confidence                    35689999999999888887543  3689999996 56665 5667889999998876        445553


Q ss_pred             CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc
Q 039497          240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA  319 (642)
Q Consensus       240 ~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~  319 (642)
                      ...   ..++|||||++|++...      ..+.++|+..+              +..                    .+.
T Consensus       333 ~~~---~~~~~SpDG~~ia~~~~------~~i~~~Dl~~g--------------~~~--------------------~lt  369 (429)
T PRK01742        333 GRG---YSAQISADGKTLVMING------DNVVKQDLTSG--------------STE--------------------VLS  369 (429)
T ss_pred             CCC---CCccCCCCCCEEEEEcC------CCEEEEECCCC--------------CeE--------------------Eec
Confidence            222   45789999999988643      13555555211              000                    000


Q ss_pred             CCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecC
Q 039497          320 SPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPT  383 (642)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spd  383 (642)
                              .......+.|+|||+.|+|.....+...+++++.++...+++.. .+.+..++|||-
T Consensus       370 --------~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        370 --------STFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             --------CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence                    00112357899999999998765555567778888887777764 556788999984

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.5e-21  Score=178.24  Aligned_cols=329  Identities=16%  Similarity=0.170  Sum_probs=209.8

Q ss_pred             eEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCc---ceE
Q 039497          122 LYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGW---PTW  198 (642)
Q Consensus       122 l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~---~~w  198 (642)
                      ++++.+.+.....+..+.....+.+|||||++||..+.+.            .+.+||+.+..+......+..|   ++|
T Consensus        98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~------------TvR~WD~~TeTp~~t~KgH~~WVlcvaw  165 (480)
T KOG0271|consen   98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDT------------TVRLWDLDTETPLFTCKGHKNWVLCVAW  165 (480)
T ss_pred             hhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCc------------eEEeeccCCCCcceeecCCccEEEEEEE
Confidence            4555555555555566666678899999999999877554            7889999887766666666655   499


Q ss_pred             eeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCcccccee-----ecCCcEEEEEEeccCCceeeEEE
Q 039497          199 SGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAA-----FHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       199 spdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      ||||+.+++. ..+|  .|..+++++|++      ....+..+.-.+..++|     .|..++|+..+.+     ..+++
T Consensus       166 sPDgk~iASG-~~dg--~I~lwdpktg~~------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skD-----g~vrI  231 (480)
T KOG0271|consen  166 SPDGKKIASG-SKDG--SIRLWDPKTGQQ------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKD-----GSVRI  231 (480)
T ss_pred             CCCcchhhcc-ccCC--eEEEecCCCCCc------ccccccCcccceeEEeecccccCCCccceecccCC-----CCEEE
Confidence            9999999888 6678  566667777753      44566777666666666     5677877774443     38889


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  353 (642)
                      ||+..+.               .++                  .+.+-...       .....|--+|  ++|.+..+  
T Consensus       232 Wd~~~~~---------------~~~------------------~lsgHT~~-------VTCvrwGG~g--liySgS~D--  267 (480)
T KOG0271|consen  232 WDTKLGT---------------CVR------------------TLSGHTAS-------VTCVRWGGEG--LIYSGSQD--  267 (480)
T ss_pred             EEccCce---------------EEE------------------EeccCccc-------eEEEEEcCCc--eEEecCCC--
Confidence            9883211               000                  00000000       0122333222  44433222  


Q ss_pred             eeEEEEECCCCCeeEEee--cCCce-----------eeeeecCC-------------------------CEEEEEEcCCC
Q 039497          354 AGIKIAKSDGSKRWTLIK--DRTAF-----------YNSWSPTE-------------------------KHVIYTSTGPI  395 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~--~~~~~-----------~~~~spdg-------------------------~~l~~~~~~~~  395 (642)
                      ..|.+++...+..-....  ...+.           .-+|.|.|                         ++|+-.+    
T Consensus       268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs----  343 (480)
T KOG0271|consen  268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS----  343 (480)
T ss_pred             ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec----
Confidence            233333333322111110  11111           11222333                         3355554    


Q ss_pred             cccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccc
Q 039497          396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD  475 (642)
Q Consensus       396 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~  475 (642)
                         ++..+.+|.-..  .     ..     .+.+++.+. ..+.++.||||+++|+-++.+   ..|.+|+..+|+.   
T Consensus       344 ---Dd~tlflW~p~~--~-----kk-----pi~rmtgHq-~lVn~V~fSPd~r~IASaSFD---kSVkLW~g~tGk~---  401 (480)
T KOG0271|consen  344 ---DDFTLFLWNPFK--S-----KK-----PITRMTGHQ-ALVNHVSFSPDGRYIASASFD---KSVKLWDGRTGKF---  401 (480)
T ss_pred             ---CCceEEEecccc--c-----cc-----chhhhhchh-hheeeEEECCCccEEEEeecc---cceeeeeCCCcch---
Confidence               367788887543  1     11     556777776 788899999999999998854   4799999999987   


Q ss_pred             eeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCE
Q 039497          476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW  555 (642)
Q Consensus       476 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~  555 (642)
                      +..+-.+-..+..++||.|.+.|+-.+.+.+        |.+|++.++++..-.+ ++..       .+..+-|||||++
T Consensus       402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsT--------LKvw~V~tkKl~~DLp-Gh~D-------EVf~vDwspDG~r  465 (480)
T KOG0271|consen  402 LASFRGHVAAVYQVAWSADSRLLVSGSKDST--------LKVWDVRTKKLKQDLP-GHAD-------EVFAVDWSPDGQR  465 (480)
T ss_pred             hhhhhhccceeEEEEeccCccEEEEcCCCce--------EEEEEeeeeeecccCC-CCCc-------eEEEEEecCCCce
Confidence            6777767778889999999987777666654        9999998887765443 4444       6788999999998


Q ss_pred             EEEEEec
Q 039497          556 LLFTANL  562 (642)
Q Consensus       556 l~~~~~~  562 (642)
                      ++-...+
T Consensus       466 V~sggkd  472 (480)
T KOG0271|consen  466 VASGGKD  472 (480)
T ss_pred             eecCCCc
Confidence            8765543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.88  E-value=5.5e-20  Score=193.43  Aligned_cols=224  Identities=28%  Similarity=0.425  Sum_probs=173.7

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..+.|||||++|+|.....+...|+++++.+++...+.. .+....+.|+|||+.|+|....      .+...||.++. 
T Consensus       193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~------~~~~~i~~~d~-  265 (417)
T TIGR02800       193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSK------DGNPDIYVMDL-  265 (417)
T ss_pred             ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECC------CCCccEEEEEC-
Confidence            467899999999998876666899999999887666655 4456679999999999988642      33445555555 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                       +     ++     ..+.++... .....+.|+|||++|+|.+.+.+..+||++++.+++.    +.++........+.|
T Consensus       266 -~-----~~-----~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~----~~l~~~~~~~~~~~~  329 (417)
T TIGR02800       266 -D-----GK-----QLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV----RRLTFRGGYNASPSW  329 (417)
T ss_pred             -C-----CC-----CEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeecCCCCccCeEE
Confidence             2     23     556666554 4556789999999999999888888999999998774    777755556678899


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      ||||++|++.....     +..+|+++|++++..+.++...          ....+.|+|||+.|++.+.+++..     
T Consensus       330 spdg~~i~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~----------~~~~p~~spdg~~l~~~~~~~~~~-----  389 (417)
T TIGR02800       330 SPDGDLIAFVHREG-----GGFNIAVMDLDGGGERVLTDTG----------LDESPSFAPNGRMILYATTRGGRG-----  389 (417)
T ss_pred             CCCCCEEEEEEccC-----CceEEEEEeCCCCCeEEccCCC----------CCCCceECCCCCEEEEEEeCCCcE-----
Confidence            99999999998764     4567999999988777665422          124679999999999999877642     


Q ss_pred             CCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEe
Q 039497          572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH  608 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s  608 (642)
                               .|++++.+++..+.++...+....|.||
T Consensus       390 ---------~l~~~~~~g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       390 ---------VLGLVSTDGRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             ---------EEEEEECCCceeeECCCCCCCcCCCCCC
Confidence                     7888888888888888766677788875

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.87  E-value=1.5e-18  Score=169.07  Aligned_cols=392  Identities=18%  Similarity=0.191  Sum_probs=230.9

Q ss_pred             eCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCceEEEEEecC
Q 039497          147 VSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGWWSIFRVSFP  223 (642)
Q Consensus       147 ~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~  223 (642)
                      -.|-|..|+|..             +..+++.+++.+....+..++..   .+.+||.|..+++. +..|...||-..-+
T Consensus        26 ~dpkgd~ilY~n-------------Gksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASG-D~sG~vRIWdtt~~   91 (603)
T KOG0318|consen   26 GDPKGDNILYTN-------------GKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASG-DVSGKVRIWDTTQK   91 (603)
T ss_pred             cCCCCCeEEEeC-------------CCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeec-CCcCcEEEEeccCc
Confidence            367799999974             45699999999988777766653   45899999855555 66786666644322


Q ss_pred             CCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee------cCCCCcccCCeecCCCC-EE
Q 039497          224 ENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT------LNPNFHHYNPFVSANSE-FI  296 (642)
Q Consensus       224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~------~~~~~~~~~~~~spDg~-~l  296 (642)
                      +-.       ....+......+..++|++|+++|+.+..-++. ...+.+||--      .++...+....+-|.-- ++
T Consensus        92 ~hi-------LKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi  163 (603)
T KOG0318|consen   92 EHI-------LKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRI  163 (603)
T ss_pred             cee-------eeeeeeecccccccceeCCCCcEEEEEecCccc-eeEEEEecCCCccceeeccceeEeeeeccCCCceEE
Confidence            210       122333344567889999999999998765443 6677888871      12211122222222111 11


Q ss_pred             EEEEeecCCCCCCcccceEeeccCCCceeEE-----eeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee
Q 039497          297 GYHRFRGESTEGQSTIPHLEPVASPVKELRM-----LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK  371 (642)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~  371 (642)
                      +....++.       .   .-..+++=+...     ..+ ....+|||||++++.++.   ...++++|-.+++..-...
T Consensus       164 ~T~sdDn~-------v---~ffeGPPFKFk~s~r~HskF-V~~VRysPDG~~Fat~gs---Dgki~iyDGktge~vg~l~  229 (603)
T KOG0318|consen  164 ATGSDDNT-------V---AFFEGPPFKFKSSFREHSKF-VNCVRYSPDGSRFATAGS---DGKIYIYDGKTGEKVGELE  229 (603)
T ss_pred             EeccCCCe-------E---EEeeCCCeeeeecccccccc-eeeEEECCCCCeEEEecC---CccEEEEcCCCccEEEEec
Confidence            11111111       0   001111100000     000 135689999999888754   4789999988887655443


Q ss_pred             -----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCc----c---------------cc--
Q 039497          372 -----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE----I---------------PC--  425 (642)
Q Consensus       372 -----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~---------------~~--  425 (642)
                           .+.+..+.||||+++++.++.       +...+||++...+--..-+-+.+    +               .+  
T Consensus       230 ~~~aHkGsIfalsWsPDs~~~~T~Sa-------Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i  302 (603)
T KOG0318|consen  230 DSDAHKGSIFALSWSPDSTQFLTVSA-------DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI  302 (603)
T ss_pred             CCCCccccEEEEEECCCCceEEEecC-------CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence                 678999999999999999874       67788888865200000000000    0               00  


Q ss_pred             ---------ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc------------------------
Q 039497          426 ---------DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF------------------------  472 (642)
Q Consensus       426 ---------~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~------------------------  472 (642)
                               ....+..+. ..+..++.+|||++|+-.+.+ |  .|-.|+..+|..                        
T Consensus       303 n~ln~~d~~~~~~i~GHn-K~ITaLtv~~d~~~i~SgsyD-G--~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~  378 (603)
T KOG0318|consen  303 NYLNPSDPSVLKVISGHN-KSITALTVSPDGKTIYSGSYD-G--HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF  378 (603)
T ss_pred             EEecccCCChhheecccc-cceeEEEEcCCCCEEEeeccC-c--eEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence                     111222222 456678999999888765432 1  222222222111                        


Q ss_pred             -----------------------------c-----------------cceeeCCC--------CCCcccceeEecCCCEE
Q 039497          473 -----------------------------N-----------------GDIRQLTD--------GPWIDTMPSWSPKGDLI  498 (642)
Q Consensus       473 -----------------------------~-----------------~~~~~l~~--------~~~~~~~~~~spdG~~l  498 (642)
                                                   |                 +.+..|..        ........+.+||++.+
T Consensus       379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v  458 (603)
T KOG0318|consen  379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV  458 (603)
T ss_pred             EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence                                         0                 00000000        01122345788888888


Q ss_pred             EEEecCCCCCCCCceeEEEEeCCCCceEE-eeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCC
Q 039497          499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRR-IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ  577 (642)
Q Consensus       499 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~  577 (642)
                      +....+..        |++|.+.+++... .....+.+       .+..+++||||++|+.....               
T Consensus       459 aVGG~Dgk--------vhvysl~g~~l~ee~~~~~h~a-------~iT~vaySpd~~yla~~Da~---------------  508 (603)
T KOG0318|consen  459 AVGGQDGK--------VHVYSLSGDELKEEAKLLEHRA-------AITDVAYSPDGAYLAAGDAS---------------  508 (603)
T ss_pred             EEecccce--------EEEEEecCCcccceeeeecccC-------CceEEEECCCCcEEEEeccC---------------
Confidence            88777654        8888887765322 12223344       67899999999998877543               


Q ss_pred             CCCcEEEEEcCCCc--eeeccCCCCCCCCcEEecCCceEEee
Q 039497          578 PYGDLYVVKLDGSG--LRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       578 ~~~~l~~~~~~~~~--~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                        ..+.+|++...+  ..+.+.+...+..++|||+++++++.
T Consensus       509 --rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATG  548 (603)
T KOG0318|consen  509 --RKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATG  548 (603)
T ss_pred             --CcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEec
Confidence              278888887765  44566677778899999999988764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.85  E-value=1e-18  Score=177.90  Aligned_cols=330  Identities=20%  Similarity=0.316  Sum_probs=206.6

Q ss_pred             CCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec--CCCcceEeeCC-eEEEEEecCCCceEEEEEecCC
Q 039497          148 SYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE--RGGWPTWSGDS-TIYFHRQADDGWWSIFRVSFPE  224 (642)
Q Consensus       148 SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~~~~~wspdg-~~~~~~~~~~g~~~l~~~~~~~  224 (642)
                      ||||+++++.....+.|+..   ....+|++++++++.+++...  ....+.||||| .++|+.   ++  +||..+..+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s---~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~---~~--nly~~~~~~   72 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHS---FKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR---DN--NLYLRDLAT   72 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSE---EEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE---TT--EEEEESSTT
T ss_pred             CCCCCeEEEEECcEEeeeec---cceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe---cC--ceEEEECCC
Confidence            89999999988766666554   456899999999998888875  23578999999 566776   33  899999888


Q ss_pred             CcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecC
Q 039497          225 NLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGE  304 (642)
Q Consensus       225 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~  304 (642)
                      +        ...+|+..+...   .+  +|.              .=|++..+.  -.....+.|||||++|+|.+.+..
T Consensus        73 ~--------~~~~lT~dg~~~---i~--nG~--------------~dwvyeEEv--~~~~~~~~WSpd~~~la~~~~d~~  123 (353)
T PF00930_consen   73 G--------QETQLTTDGEPG---IY--NGV--------------PDWVYEEEV--FDRRSAVWWSPDSKYLAFLRFDER  123 (353)
T ss_dssp             S--------EEEESES--TTT---EE--ESB----------------HHHHHHT--SSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred             C--------CeEEecccccee---EE--cCc--------------cceeccccc--cccccceEECCCCCEEEEEEECCc
Confidence            7        667777765111   00  110              001111110  011234579999999999987766


Q ss_pred             CCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe--cCCCceeEEEEECCCCCeeEEee-------cCCc
Q 039497          305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH--DFELNAGIKIAKSDGSKRWTLIK-------DRTA  375 (642)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~~l~~~d~~~~~~~~l~~-------~~~~  375 (642)
                      ..    ....+........         ..|..    ..+-|-.  ..+....|+++++++++...+..       ...+
T Consensus       124 ~v----~~~~~~~~~~~~~---------~yp~~----~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl  186 (353)
T PF00930_consen  124 EV----PEYPLPDYSPPDS---------QYPEV----ESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYL  186 (353)
T ss_dssp             TS-----EEEEEEESSSTE---------SS-EE----EEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEE
T ss_pred             CC----ceEEeeccCCccc---------cCCcc----cccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCc
Confidence            31    1111111111100         01111    1122211  11345789999999988655443       3456


Q ss_pred             eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc-ccCCCC---ccCcEEC-CCCCeE
Q 039497          376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT-KEETGN---NAFPSCS-PDGKFL  450 (642)
Q Consensus       376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~---~~~~~~S-pDg~~l  450 (642)
                      ..+.|++|++.|++....    .......++.++.  .     .+     ..+.+. ......   ...+.|. +++..+
T Consensus       187 ~~v~W~~d~~~l~~~~~n----R~q~~~~l~~~d~--~-----tg-----~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~  250 (353)
T PF00930_consen  187 TRVGWSPDGKRLWVQWLN----RDQNRLDLVLCDA--S-----TG-----ETRVVLEETSDGWVDVYDPPHFLGPDGNEF  250 (353)
T ss_dssp             EEEEEEETTEEEEEEEEE----TTSTEEEEEEEEE--C-----TT-----TCEEEEEEESSSSSSSSSEEEE-TTTSSEE
T ss_pred             ccceecCCCcEEEEEEcc----cCCCEEEEEEEEC--C-----CC-----ceeEEEEecCCcceeeecccccccCCCCEE
Confidence            788999999966665532    2355666666655  2     22     222221 111122   2234555 899999


Q ss_pred             EEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEe
Q 039497          451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRI  528 (642)
Q Consensus       451 ~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l  528 (642)
                      ++.+.++|..+||+++.+++.    .++|+.+.+.+.. ..|+++++.|+|.+....   +...+||+++++ +++.++|
T Consensus       251 l~~s~~~G~~hly~~~~~~~~----~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~---p~~r~lY~v~~~~~~~~~~L  323 (353)
T PF00930_consen  251 LWISERDGYRHLYLYDLDGGK----PRQLTSGDWEVTSILGWDEDNNRIYFTANGDN---PGERHLYRVSLDSGGEPKCL  323 (353)
T ss_dssp             EEEEETTSSEEEEEEETTSSE----EEESS-SSS-EEEEEEEECTSSEEEEEESSGG---TTSBEEEEEETTETTEEEES
T ss_pred             EEEEEcCCCcEEEEEcccccc----eeccccCceeecccceEcCCCCEEEEEecCCC---CCceEEEEEEeCCCCCeEec
Confidence            999999999999999999877    4899999888855 589999999999998754   378999999999 9999999


Q ss_pred             eecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          529 HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      +.....         ...+.|||||++++.+....
T Consensus       324 T~~~~~---------~~~~~~Spdg~y~v~~~s~~  349 (353)
T PF00930_consen  324 TCEDGD---------HYSASFSPDGKYYVDTYSGP  349 (353)
T ss_dssp             STTSST---------TEEEEE-TTSSEEEEEEESS
T ss_pred             cCCCCC---------ceEEEECCCCCEEEEEEcCC
Confidence            864321         14799999999999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=6.3e-20  Score=171.67  Aligned_cols=321  Identities=17%  Similarity=0.149  Sum_probs=213.0

Q ss_pred             EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCC
Q 039497          216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNP  287 (642)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~  287 (642)
                      .+|++...+.        ....+.+++..+...+|||+|++|+.     |+...++++||+.+        ++...+...
T Consensus        97 avfrvrpvtr--------CssS~~GH~e~Vl~~~fsp~g~~l~t-----GsGD~TvR~WD~~TeTp~~t~KgH~~WVlcv  163 (480)
T KOG0271|consen   97 AVFRVRPVTR--------CSSSIAGHGEAVLSVQFSPTGSRLVT-----GSGDTTVRLWDLDTETPLFTCKGHKNWVLCV  163 (480)
T ss_pred             hhhcccccce--------eccccCCCCCcEEEEEecCCCceEEe-----cCCCceEEeeccCCCCcceeecCCccEEEEE
Confidence            4555555444        44567777778889999999999998     66677999999932        445556788


Q ss_pred             eecCCCCEEEEEEeecCCCCCCcccceEeeccCCC-ceeEEeeeCCCcc-----EEcCCCCEEEEEecCCCceeEEEEEC
Q 039497          288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV-KELRMLRLNGSFP-----SFSPDGGLIVFNHDFELNAGIKIAKS  361 (642)
Q Consensus       288 ~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~spdg~~l~~~~~~~~~~~l~~~d~  361 (642)
                      +|||||++|+.-..++.      ..+|-....... ..+.-..-....+     ...|..++++-.+   ..+.+.++|+
T Consensus       164 awsPDgk~iASG~~dg~------I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s---kDg~vrIWd~  234 (480)
T KOG0271|consen  164 AWSPDGKKIASGSKDGS------IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS---KDGSVRIWDT  234 (480)
T ss_pred             EECCCcchhhccccCCe------EEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc---CCCCEEEEEc
Confidence            99999999998776665      233321111110 1110000111222     3467777766643   3567888888


Q ss_pred             CCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCcc
Q 039497          362 DGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA  439 (642)
Q Consensus       362 ~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  439 (642)
                      ..+.......  ...+..+.|--+|  ++|..      ..+.++++|+...        |.     ..+.|..+. ..+.
T Consensus       235 ~~~~~~~~lsgHT~~VTCvrwGG~g--liySg------S~DrtIkvw~a~d--------G~-----~~r~lkGHa-hwvN  292 (480)
T KOG0271|consen  235 KLGTCVRTLSGHTASVTCVRWGGEG--LIYSG------SQDRTIKVWRALD--------GK-----LCRELKGHA-HWVN  292 (480)
T ss_pred             cCceEEEEeccCccceEEEEEcCCc--eEEec------CCCceEEEEEccc--------hh-----HHHhhcccc-hhee
Confidence            8877555544  4557788886444  66665      3478999998754        22     334444433 3333


Q ss_pred             CcEEC-----------CCCCe-------------------------EEEEeCCCCceeEEEEECCCCccccceeeCCCCC
Q 039497          440 FPSCS-----------PDGKF-------------------------LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP  483 (642)
Q Consensus       440 ~~~~S-----------pDg~~-------------------------l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~  483 (642)
                      +++.|           |-|++                         ++-.+   .+..+|+|+....+  +++...+.+.
T Consensus       293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs---Dd~tlflW~p~~~k--kpi~rmtgHq  367 (480)
T KOG0271|consen  293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS---DDFTLFLWNPFKSK--KPITRMTGHQ  367 (480)
T ss_pred             eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec---CCceEEEecccccc--cchhhhhchh
Confidence            33333           33433                         55554   33589999976433  1256777787


Q ss_pred             CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      ..++++.|||||++|+-++-+..        |.+|+..+|+.-.... ++-+       .++.++||.|.+.|+-.+.+.
T Consensus       368 ~lVn~V~fSPd~r~IASaSFDkS--------VkLW~g~tGk~lasfR-GHv~-------~VYqvawsaDsRLlVS~SkDs  431 (480)
T KOG0271|consen  368 ALVNHVSFSPDGRYIASASFDKS--------VKLWDGRTGKFLASFR-GHVA-------AVYQVAWSADSRLLVSGSKDS  431 (480)
T ss_pred             hheeeEEECCCccEEEEeecccc--------eeeeeCCCcchhhhhh-hccc-------eeEEEEeccCccEEEEcCCCc
Confidence            88899999999999999988765        8999998887643222 4444       678999999999887777664


Q ss_pred             CcccCCCCCCCCCCCCCcEEEEEcCCCce-eeccCCCCCCCCcEEecCCceEEeec
Q 039497          564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RRLTWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lt~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                                       -|-+|++.++++ .-|..+...++.+.|||||+.+++..
T Consensus       432 -----------------TLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg  470 (480)
T KOG0271|consen  432 -----------------TLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG  470 (480)
T ss_pred             -----------------eEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence                             566667776664 45666778889999999999988753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.84  E-value=7.3e-19  Score=184.92  Aligned_cols=229  Identities=28%  Similarity=0.478  Sum_probs=173.2

Q ss_pred             CCEEEEEecC--CCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCC
Q 039497          341 GGLIVFNHDF--ELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDD  417 (642)
Q Consensus       341 g~~l~~~~~~--~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  417 (642)
                      +.+++|....  .+...|+++|.++...+++.. ...+..+.|||||++|+|+...    .+...++++++..       
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~----~~~~~i~v~d~~~-------  223 (417)
T TIGR02800       155 STRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFE----SGKPEIYVQDLAT-------  223 (417)
T ss_pred             CCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcC----CCCcEEEEEECCC-------
Confidence            5678887653  356789999999888788776 4457889999999999998753    2233455555433       


Q ss_pred             CCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCE
Q 039497          418 NNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL  497 (642)
Q Consensus       418 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~  497 (642)
                        +     ....+.... +....+.|||||+.|+|....++..+||++++.+++.    ++++........+.|+|||++
T Consensus       224 --g-----~~~~~~~~~-~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~s~dg~~  291 (417)
T TIGR02800       224 --G-----QREKVASFP-GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL----TRLTNGPGIDTEPSWSPDGKS  291 (417)
T ss_pred             --C-----CEEEeecCC-CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE----EECCCCCCCCCCEEECCCCCE
Confidence              3     345555444 4556789999999999988777778999999998874    788776656668899999999


Q ss_pred             EEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCC
Q 039497          498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ  577 (642)
Q Consensus       498 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~  577 (642)
                      |+|.+.+.     +..+||++++++++.++++....         ....+.|||||++|+++....+.            
T Consensus       292 l~~~s~~~-----g~~~iy~~d~~~~~~~~l~~~~~---------~~~~~~~spdg~~i~~~~~~~~~------------  345 (417)
T TIGR02800       292 IAFTSDRG-----GSPQIYMMDADGGEVRRLTFRGG---------YNASPSWSPDGDLIAFVHREGGG------------  345 (417)
T ss_pred             EEEEECCC-----CCceEEEEECCCCCEEEeecCCC---------CccCeEECCCCCEEEEEEccCCc------------
Confidence            99988765     34589999999988877764322         34678999999999999876532            


Q ss_pred             CCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          578 PYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       578 ~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                        .+|+.++++++..+.++... ....+.|+|||++++...+.+
T Consensus       346 --~~i~~~d~~~~~~~~l~~~~-~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       346 --FNIAVMDLDGGGERVLTDTG-LDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             --eEEEEEeCCCCCeEEccCCC-CCCCceECCCCCEEEEEEeCC
Confidence              38999999998888777543 446889999998876655544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.84  E-value=4e-19  Score=181.15  Aligned_cols=225  Identities=25%  Similarity=0.392  Sum_probs=179.6

Q ss_pred             CccEEcCCCCEEEEEecCCCc-eeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          333 SFPSFSPDGGLIVFNHDFELN-AGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~-~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ..|.|+|+++.++|.....+. ..++++++++++...+.. .+....+.|||||++|+|+..+      ++...||.+++
T Consensus       196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~r------dg~~~iy~~dl  269 (425)
T COG0823         196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSR------DGSPDIYLMDL  269 (425)
T ss_pred             eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECC------CCCccEEEEcC
Confidence            568999999999998765555 799999999998777766 7778899999999999999964      67777888877


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                        .     ++     ...+|+... +....+.|||||++|+|.+++.|..+||+++.++++    .++++........|.
T Consensus       270 --~-----~~-----~~~~Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~----~~riT~~~~~~~~p~  332 (425)
T COG0823         270 --D-----GK-----NLPRLTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ----VTRLTFSGGGNSNPV  332 (425)
T ss_pred             --C-----CC-----cceecccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc----eeEeeccCCCCcCcc
Confidence              3     23     455577777 777799999999999999999999999999999777    488887766666899


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc-eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG-LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP  569 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~  569 (642)
                      |||||++|+|.+...     +...|.+.|+.++. .+.++....          ...+.|+++|+.|+|.+...+.    
T Consensus       333 ~SpdG~~i~~~~~~~-----g~~~i~~~~~~~~~~~~~lt~~~~----------~e~ps~~~ng~~i~~~s~~~~~----  393 (425)
T COG0823         333 WSPDGDKIVFESSSG-----GQWDIDKNDLASGGKIRILTSTYL----------NESPSWAPNGRMIMFSSGQGGG----  393 (425)
T ss_pred             CCCCCCEEEEEeccC-----CceeeEEeccCCCCcEEEcccccc----------CCCCCcCCCCceEEEeccCCCC----
Confidence            999999999999543     34779999997766 555554322          2478999999999999877643    


Q ss_pred             CCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497          570 VSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP  609 (642)
Q Consensus       570 ~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~  609 (642)
                                ..|+.+..++.....+....+....++|+|
T Consensus       394 ----------~~l~~~s~~g~~~~~~~~~~~~~~~p~w~~  423 (425)
T COG0823         394 ----------SVLSLVSLDGRVSRPLPLADGDVRVPAWSP  423 (425)
T ss_pred             ----------ceEEEeeccceeEEEEeccCcceecccccC
Confidence                      388888888766665555556677888875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.81  E-value=2.3e-18  Score=175.58  Aligned_cols=219  Identities=27%  Similarity=0.478  Sum_probs=170.0

Q ss_pred             CCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCC-CeEEEEEEEeecCCCCCCCCCccccceE
Q 039497          351 ELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSER-ATVQIARVSFQLDPSDDNNREEIPCDVK  428 (642)
Q Consensus       351 ~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  428 (642)
                      ....++++.|-++...+.++. ...+..+.|+|+++.++|....    ... ..+.+++++.         +     ...
T Consensus       170 ~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~----~~~~~~i~~~~l~~---------g-----~~~  231 (425)
T COG0823         170 PLPYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFE----LGGCPRIYYLDLNT---------G-----KRP  231 (425)
T ss_pred             CCCceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEe----cCCCceEEEEeccC---------C-----ccc
Confidence            345789999988766666666 5567789999999999999753    222 3455555544         2     333


Q ss_pred             EccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497          429 ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       429 ~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~  508 (642)
                      .+.... +....++|||||++|+|...+++..+||++|+.+++.    ..|+...+....|.|||||++|+|.+++.   
T Consensus       232 ~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~---  303 (425)
T COG0823         232 VILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL----PRLTNGFGINTSPSWSPDGSKIVFTSDRG---  303 (425)
T ss_pred             eeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc----eecccCCccccCccCCCCCCEEEEEeCCC---
Confidence            344344 6778899999999999999999999999999998874    77999888888999999999999999887   


Q ss_pred             CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497          509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD  588 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  588 (642)
                        +..+||+++++++..++++.....         ...+.|||||++|+|....++.              ..|...++.
T Consensus       304 --G~p~I~~~~~~g~~~~riT~~~~~---------~~~p~~SpdG~~i~~~~~~~g~--------------~~i~~~~~~  358 (425)
T COG0823         304 --GRPQIYLYDLEGSQVTRLTFSGGG---------NSNPVWSPDGDKIVFESSSGGQ--------------WDIDKNDLA  358 (425)
T ss_pred             --CCcceEEECCCCCceeEeeccCCC---------CcCccCCCCCCEEEEEeccCCc--------------eeeEEeccC
Confidence              567999999999999999875432         2479999999999999854332              268888877


Q ss_pred             CCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          589 GSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       589 ~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      .+. .+.++ .......+.|.++|+.++.....+
T Consensus       359 ~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         359 SGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             CCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence            665 55555 455667999999999997766555

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=2.6e-15  Score=152.56  Aligned_cols=462  Identities=13%  Similarity=0.123  Sum_probs=269.8

Q ss_pred             CCcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcc
Q 039497            2 EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKT   81 (642)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~   81 (642)
                      +|.++++-+.+    ..|....++..-    -...++++ .........|| |||+.+|...  ..-.+||.. ++--+.
T Consensus        64 Sp~g~lllavd----E~g~~~lvs~~~----r~Vlh~f~-fk~~v~~i~fS-Png~~fav~~--gn~lqiw~~-P~~~~~  130 (893)
T KOG0291|consen   64 SPDGTLLLAVD----ERGRALLVSLLS----RSVLHRFN-FKRGVGAIKFS-PNGKFFAVGC--GNLLQIWHA-PGEIKN  130 (893)
T ss_pred             CCCceEEEEEc----CCCcEEEEeccc----ceeeEEEe-ecCccceEEEC-CCCcEEEEEe--cceeEEEec-Ccchhc
Confidence            56666666644    456666666653    13334444 33446788899 9999998543  345788886 221110


Q ss_pred             cccCCCCCCcccc------cccc-CCCEEEEEEeccCCCcccccccceEEEEcc-CCceEecccCCCccCCceeCCCCcE
Q 039497           82 ELLPSIPCSLFHD------RPVA-RNNKLFFISAHEQPDQIFKSWSALYSTDLK-ASKFTRLTPYGVVDYSPSVSYSGKF  153 (642)
Q Consensus        82 ~~~~~~~~~~~~~------~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lt~~~~~~~~~~~SPDG~~  153 (642)
                      +-.+-..+.++..      ...| +|.+++.+...+-.       ..||.++.. +-.+..+..+..+.....|+.|...
T Consensus       131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s-------~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~  203 (893)
T KOG0291|consen  131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLS-------ARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLD  203 (893)
T ss_pred             ccCcceEeeeecCCccceeEEEeccCCceEEeccccce-------EEEEEeccccccceEeccCCCcceEEEEeccCcce
Confidence            1111111122221      2233 56666666555422       246655433 2345667777766666667777766


Q ss_pred             EEEEecCCCCCCCCCCCCeeeEEEEEec-----------------------CCCc--ee-----E----eecCC---Ccc
Q 039497          154 IAVASYESRPWPGEFHELNTDIVVFQES-----------------------DPNK--RV-----I----VCERG---GWP  196 (642)
Q Consensus       154 la~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~g~~--~~-----l----~~~~~---~~~  196 (642)
                      |..++.++            .|++|...                       .++.  .+     +    .....   ...
T Consensus       204 l~tvskdG------------~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa  271 (893)
T KOG0291|consen  204 LYTVSKDG------------ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAA  271 (893)
T ss_pred             EEEEecCc------------eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeee
Confidence            66665444            23333222                       1111  00     0    00111   123


Q ss_pred             eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497          197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL  276 (642)
Q Consensus       197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~  276 (642)
                      ++.+...++++. -..|...||.++--.         .+..+.-....+..++|+.-|.+|++....-    ..+-+|++
T Consensus       272 ~fH~~t~~lvvg-FssG~f~LyelP~f~---------lih~LSis~~~I~t~~~N~tGDWiA~g~~kl----gQLlVweW  337 (893)
T KOG0291|consen  272 AFHKGTNLLVVG-FSSGEFGLYELPDFN---------LIHSLSISDQKILTVSFNSTGDWIAFGCSKL----GQLLVWEW  337 (893)
T ss_pred             eccCCceEEEEE-ecCCeeEEEecCCce---------EEEEeecccceeeEEEecccCCEEEEcCCcc----ceEEEEEe
Confidence            566666666665 345666677654222         3444444455677788888999999965443    36777777


Q ss_pred             --------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEee--eCCCccEEcCCCCEEEE
Q 039497          277 --------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLR--LNGSFPSFSPDGGLIVF  346 (642)
Q Consensus       277 --------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~  346 (642)
                              +.++...+...+.||||+.|+.-..+++.      .+|-..-  .-=..+...  .....+.|+..|+.++.
T Consensus       338 qsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV------KvWn~~S--gfC~vTFteHts~Vt~v~f~~~g~~lls  409 (893)
T KOG0291|consen  338 QSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV------KVWNTQS--GFCFVTFTEHTSGVTAVQFTARGNVLLS  409 (893)
T ss_pred             eccceeeeccccccceeeEEECCCCcEEEeccCCCcE------EEEeccC--ceEEEEeccCCCceEEEEEEecCCEEEE
Confidence                    34556667788999999999998877773      3332221  100111111  12245688999986666


Q ss_pred             EecCCCceeEEEEECCCCCee-EEeecCC--ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcc
Q 039497          347 NHDFELNAGIKIAKSDGSKRW-TLIKDRT--AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI  423 (642)
Q Consensus       347 ~~~~~~~~~l~~~d~~~~~~~-~l~~~~~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  423 (642)
                      .+- +  +.+..+|+....-. ..+....  ...++..|.|..+....      .+.-.+.+|.+.+        |.   
T Consensus       410 sSL-D--GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~------~d~F~IfvWS~qT--------Gq---  469 (893)
T KOG0291|consen  410 SSL-D--GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA------QDSFEIFVWSVQT--------GQ---  469 (893)
T ss_pred             eec-C--CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec------cceEEEEEEEeec--------Ce---
Confidence            543 3  45666677655433 3333332  34566677788766665      3467889999987        44   


Q ss_pred             ccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC--CccccceeeCCCCCCcccceeEecCCCEEEEE
Q 039497          424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN--GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS  501 (642)
Q Consensus       424 ~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~  501 (642)
                        ....|..++ +.+..+.|+|+|..|+-.+.+   ..|.+||+-.  |+    ++.|.-. ..+..++|+|||+.|+++
T Consensus       470 --llDiLsGHE-gPVs~l~f~~~~~~LaS~SWD---kTVRiW~if~s~~~----vEtl~i~-sdvl~vsfrPdG~elaVa  538 (893)
T KOG0291|consen  470 --LLDILSGHE-GPVSGLSFSPDGSLLASGSWD---KTVRIWDIFSSSGT----VETLEIR-SDVLAVSFRPDGKELAVA  538 (893)
T ss_pred             --eeehhcCCC-CcceeeEEccccCeEEecccc---ceEEEEEeeccCce----eeeEeec-cceeEEEEcCCCCeEEEE
Confidence              566677777 888889999999988877643   2667777643  34    3444432 356788999999999999


Q ss_pred             ecCCCCCCCCceeEEEEeCCCCceE-----------------EeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497          502 SNRHNPDNVEAFSLYVIKPDGSGLR-----------------RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       502 ~~~~~~~~~~~~~l~~~d~~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                      .-++.        |-.||...+...                 .++..+     ......+..+.+|+||+.|+....
T Consensus       539 Tldgq--------Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~-----sa~~K~Ftti~ySaDG~~IlAgG~  602 (893)
T KOG0291|consen  539 TLDGQ--------ITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN-----SAKGKTFTTICYSADGKCILAGGE  602 (893)
T ss_pred             Eecce--------EEEEEhhhceeeccccchhhccccccccceeehhh-----cccCCceEEEEEcCCCCEEEecCC
Confidence            98864        777877543322                 111110     011235678999999998876554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=99.78  E-value=1.2e-15  Score=148.74  Aligned_cols=323  Identities=17%  Similarity=0.172  Sum_probs=168.0

Q ss_pred             eeeEEEecCCCCCCCCCceeeecCCceee-----eeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcc
Q 039497           18 GFDVFSIKSPFVNAPKFHEHRLTDGTSIN-----FNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLF   92 (642)
Q Consensus        18 ~~~i~~~~~~~~~~~~~~~~rlt~~~~~~-----~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~   92 (642)
                      +..-|.-+..|     -+.+|||...+..     .++.|+ +||++|+|.+.++|..                       
T Consensus        10 ~~~~~~D~~TG-----~~VtrLT~~~~~~h~~YF~~~~ft-~dG~kllF~s~~dg~~-----------------------   60 (386)
T PF14583_consen   10 EFKTWIDPDTG-----HRVTRLTPPDGHSHRLYFYQNCFT-DDGRKLLFASDFDGNR-----------------------   60 (386)
T ss_dssp             -EEEEE-TTT-------EEEE-S-TTS-EE---TTS--B--TTS-EEEEEE-TTSS------------------------
T ss_pred             ceeEEeCCCCC-----ceEEEecCCCCcccceeecCCCcC-CCCCEEEEEeccCCCc-----------------------
Confidence            45788999998     8899999655533     567788 8888888887765543                       


Q ss_pred             ccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCc-cCCceeCCCCcEEEEEecCCCCCCCCCCCC
Q 039497           93 HDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVV-DYSPSVSYSGKFIAVASYESRPWPGEFHEL  171 (642)
Q Consensus        93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~-~~~~~~SPDG~~la~~~~~~~~~~~~~~~~  171 (642)
                                                  +||.+++++++++|||..+.. .....+||+.+.|.|.....          
T Consensus        61 ----------------------------nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~----------  102 (386)
T PF14583_consen   61 ----------------------------NLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGR----------  102 (386)
T ss_dssp             ----------------------------EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTT----------
T ss_pred             ----------------------------ceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCC----------
Confidence                                        577779999999999987644 34678999999999887544          


Q ss_pred             eeeEEEEEecCCCceeEeecCCCc---ceEee--CCeEEE-EEe-cC-----------------CCceEEEEEecCCCcc
Q 039497          172 NTDIVVFQESDPNKRVIVCERGGW---PTWSG--DSTIYF-HRQ-AD-----------------DGWWSIFRVSFPENLE  227 (642)
Q Consensus       172 ~~~l~~~~~~~g~~~~l~~~~~~~---~~wsp--dg~~~~-~~~-~~-----------------~g~~~l~~~~~~~~~~  227 (642)
                        .|+.+++++.+.+.|......+   -.|..  |++.++ +.. ..                 .-...|+.+++.+|  
T Consensus       103 --~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG--  178 (386)
T PF14583_consen  103 --SLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG--  178 (386)
T ss_dssp             --EEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---
T ss_pred             --eEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC--
Confidence              7999999999988887755543   37764  444443 321 11                 11238889999988  


Q ss_pred             cccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCc-eeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCC
Q 039497          228 FLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRN-FRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGES  305 (642)
Q Consensus       228 ~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~  305 (642)
                            +.+.+........++.+|| |...|+|+-.-.-.. ...||+.+.                         ++..
T Consensus       179 ------~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~-------------------------dg~~  227 (386)
T PF14583_consen  179 ------ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT-------------------------DGSN  227 (386)
T ss_dssp             -------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-------------------------TS--
T ss_pred             ------ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-------------------------CCCc
Confidence                  6677766666677888887 456666654322111 124444332                         1110


Q ss_pred             CCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC--CCceeEEEEECCCCCeeEEeecCCceeeeeecC
Q 039497          306 TEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF--ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPT  383 (642)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spd  383 (642)
                             .+  .+..... .    ....+.-|+|||+.|.|....  .....|.-+++++++.+.+.......++.-++|
T Consensus       228 -------~~--~v~~~~~-~----e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~D  293 (386)
T PF14583_consen  228 -------VK--KVHRRME-G----ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPD  293 (386)
T ss_dssp             --------E--ESS---T-T----EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TT
T ss_pred             -------ce--eeecCCC-C----cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCC
Confidence                   00  0000000 0    011355899999999997652  223457778898888777665445667888899


Q ss_pred             CCEEEEEEcC-CCccc------CCCeEEEEEEEeecCCCCCCCCCccccceEEcccc---------C-CCCccCcEECCC
Q 039497          384 EKHVIYTSTG-PIFQS------ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE---------E-TGNNAFPSCSPD  446 (642)
Q Consensus       384 g~~l~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~-~~~~~~~~~SpD  446 (642)
                      |+.++=-... +....      -.....|+.++.  .     .+     ....|..+         . .....++.||||
T Consensus       294 g~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~--~-----~~-----~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPD  361 (386)
T PF14583_consen  294 GKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV--E-----AG-----RFRKLARHDTSWKVLDGDRQVTHPHPSFSPD  361 (386)
T ss_dssp             SSEEEEEE-------------------EEEEEET--T-----TT-----EEEEEEE-------BTTBSSTT----EE-TT
T ss_pred             CCEEEecCCCCCccccccccceecCCcEEEEecc--c-----cC-----ceeeeeeccCcceeecCCCccCCCCCccCCC
Confidence            9865432221 10000      012235555544  2     11     22222221         1 113457899999


Q ss_pred             CCeEEEEeCCCCceeEEEEECC
Q 039497          447 GKFLVFRSGRSGHKNLFVLDAV  468 (642)
Q Consensus       447 g~~l~~~~~~~g~~~l~~~d~~  468 (642)
                      |++|+|.++..|...||++++.
T Consensus       362 gk~VlF~Sd~~G~~~vY~v~i~  383 (386)
T PF14583_consen  362 GKWVLFRSDMEGPPAVYLVEIP  383 (386)
T ss_dssp             SSEEEEEE-TTSS-EEEEEE--
T ss_pred             CCEEEEECCCCCCccEEEEeCc
Confidence            9999999999999999999875

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.75  E-value=4.6e-16  Score=158.39  Aligned_cols=241  Identities=23%  Similarity=0.290  Sum_probs=161.9

Q ss_pred             CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecC-------------------CceeeeeecCCCEEEEEEc
Q 039497          332 GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR-------------------TAFYNSWSPTEKHVIYTST  392 (642)
Q Consensus       332 ~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-------------------~~~~~~~spdg~~l~~~~~  392 (642)
                      ...+.|||||++|+|+..    .+||+.++.++..++++.++                   ....+.|||||++|+|...
T Consensus        45 ~~~~~~sP~g~~~~~v~~----~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   45 LQDAKWSPDGKYIAFVRD----NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             BSEEEE-SSSTEEEEEET----TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             cccceeecCCCeeEEEec----CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            356799999999999875    68999999888888888732                   2246789999999999886


Q ss_pred             CCCcc---------------------------cCCCeEEEEEEEeecCCCCCCCCCccccceEEccc-----cCCCCccC
Q 039497          393 GPIFQ---------------------------SERATVQIARVSFQLDPSDDNNREEIPCDVKILTK-----EETGNNAF  440 (642)
Q Consensus       393 ~~~~~---------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~  440 (642)
                      .....                           .....+.++.++.  +     ++     +...+..     ........
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~--~-----~~-----~~~~~~~~~~~~~~~~yl~~  188 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL--A-----SG-----KTTELDPPNSLNPQDYYLTR  188 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES--S-----ST-----CCCEE---HHHHTSSEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC--C-----CC-----cEEEeeeccccCCCccCccc
Confidence            31100                           0123444555544  2     22     2212211     11245667


Q ss_pred             cEECCCCCeEEEEe-CC-CCceeEEEEECCCCccccceeeCC---CCCCc--ccceeEe-cCCCEEEEEecCCCCCCCCc
Q 039497          441 PSCSPDGKFLVFRS-GR-SGHKNLFVLDAVNGEFNGDIRQLT---DGPWI--DTMPSWS-PKGDLIAFSSNRHNPDNVEA  512 (642)
Q Consensus       441 ~~~SpDg~~l~~~~-~~-~g~~~l~~~d~~~g~~~~~~~~l~---~~~~~--~~~~~~s-pdG~~l~~~~~~~~~~~~~~  512 (642)
                      +.|++|++.|++.. +| .....|++.|..+|+.    +.+.   ...+.  ...+.|. +++..+++.+...     +.
T Consensus       189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~----~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~-----G~  259 (353)
T PF00930_consen  189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET----RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD-----GY  259 (353)
T ss_dssp             EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC----EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT-----SS
T ss_pred             ceecCCCcEEEEEEcccCCCEEEEEEEECCCCce----eEEEEecCCcceeeecccccccCCCCEEEEEEEcC-----CC
Confidence            89999999555433 33 3455888999988774    3221   22221  1234555 8999998888854     68


Q ss_pred             eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC-CCc
Q 039497          513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD-GSG  591 (642)
Q Consensus       513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~  591 (642)
                      .+||+++.+++..+.||......        ...+.|+++++.|+|++.....            ...+||.++++ ++.
T Consensus       260 ~hly~~~~~~~~~~~lT~G~~~V--------~~i~~~d~~~~~iyf~a~~~~p------------~~r~lY~v~~~~~~~  319 (353)
T PF00930_consen  260 RHLYLYDLDGGKPRQLTSGDWEV--------TSILGWDEDNNRIYFTANGDNP------------GERHLYRVSLDSGGE  319 (353)
T ss_dssp             EEEEEEETTSSEEEESS-SSS-E--------EEEEEEECTSSEEEEEESSGGT------------TSBEEEEEETTETTE
T ss_pred             cEEEEEcccccceeccccCceee--------cccceEcCCCCEEEEEecCCCC------------CceEEEEEEeCCCCC
Confidence            99999999999999998754331        1357899999999999987442            24599999999 999


Q ss_pred             eeeccCCCCCCCCcEEecCCceEEee
Q 039497          592 LRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       592 ~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      +++||.......++.|||||++++-.
T Consensus       320 ~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  320 PKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             EEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             eEeccCCCCCceEEEECCCCCEEEEE
Confidence            99999876664589999999998543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.73  E-value=2.7e-15  Score=133.18  Aligned_cols=265  Identities=17%  Similarity=0.180  Sum_probs=178.8

Q ss_pred             EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497          204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH  283 (642)
Q Consensus       204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~  283 (642)
                      ++.+..+-|-  .|..+...+|.       ....+...+..+..+.++||++.|+.+.      ...|++||+..+..- 
T Consensus        11 viLvsA~YDh--TIRfWqa~tG~-------C~rTiqh~dsqVNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~-   74 (311)
T KOG0315|consen   11 VILVSAGYDH--TIRFWQALTGI-------CSRTIQHPDSQVNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPN-   74 (311)
T ss_pred             eEEEeccCcc--eeeeeehhcCe-------EEEEEecCccceeeEEEcCCcchhhhcc------CCeeEEEEccCCCCC-
Confidence            4444324455  44445556664       5666777788899999999999999854      347999998443211 


Q ss_pred             ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497          284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG  363 (642)
Q Consensus       284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~  363 (642)
                         |       .+-|.                    +.       ..+.....|..||++++..++ ++.  +.++|+..
T Consensus        75 ---P-------v~t~e--------------------~h-------~kNVtaVgF~~dgrWMyTgse-Dgt--~kIWdlR~  114 (311)
T KOG0315|consen   75 ---P-------VATFE--------------------GH-------TKNVTAVGFQCDGRWMYTGSE-DGT--VKIWDLRS  114 (311)
T ss_pred             ---c-------eeEEe--------------------cc-------CCceEEEEEeecCeEEEecCC-Cce--EEEEeccC
Confidence               0       01111                    00       011124578889998766544 444  44556555


Q ss_pred             CCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE
Q 039497          364 SKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS  442 (642)
Q Consensus       364 ~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  442 (642)
                      -...++.. ...+..+...|+...|+....       .+.+++|++..  +      -     ....+..+....+..++
T Consensus       115 ~~~qR~~~~~spVn~vvlhpnQteLis~dq-------sg~irvWDl~~--~------~-----c~~~liPe~~~~i~sl~  174 (311)
T KOG0315|consen  115 LSCQRNYQHNSPVNTVVLHPNQTELISGDQ-------SGNIRVWDLGE--N------S-----CTHELIPEDDTSIQSLT  174 (311)
T ss_pred             cccchhccCCCCcceEEecCCcceEEeecC-------CCcEEEEEccC--C------c-----cccccCCCCCcceeeEE
Confidence            44444433 677889999999988887753       78999999966  2      2     23444444436788899


Q ss_pred             ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEe
Q 039497          443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT---DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK  519 (642)
Q Consensus       443 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~---~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d  519 (642)
                      ..|||++++.+.++   ...|.|++-+++.+++++.++   .+......+.+|||+++|+..+.+..        +++|+
T Consensus       175 v~~dgsml~a~nnk---G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt--------v~iwn  243 (311)
T KOG0315|consen  175 VMPDGSMLAAANNK---GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT--------VKIWN  243 (311)
T ss_pred             EcCCCcEEEEecCC---ccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce--------EEEEe
Confidence            99999999877754   378999987666533344443   34556677899999999999998875        89999


Q ss_pred             CCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          520 PDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       520 ~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      .++- +.+..+. +.+.       .+.+.+||.||++|+..+++.
T Consensus       244 ~~~~~kle~~l~-gh~r-------WvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  244 TDDFFKLELVLT-GHQR-------WVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             cCCceeeEEEee-cCCc-------eEEeeeeccCccEEEecCCCC
Confidence            8876 3333333 4555       678999999999999888875

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=99.73  E-value=3.5e-15  Score=145.48  Aligned_cols=328  Identities=20%  Similarity=0.205  Sum_probs=165.2

Q ss_pred             ceEEEEccCCceEecccCCCc-----cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-
Q 039497          121 ALYSTDLKASKFTRLTPYGVV-----DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG-  194 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~-----~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-  194 (642)
                      +-|.-+..+.++++||.....     -..+.|++||++|+|.++..         +..++|++++++++.+|||...+. 
T Consensus        12 ~~~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d---------g~~nly~lDL~t~~i~QLTdg~g~~   82 (386)
T PF14583_consen   12 KTWIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD---------GNRNLYLLDLATGEITQLTDGPGDN   82 (386)
T ss_dssp             EEEE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT---------SS-EEEEEETTT-EEEE---SS-B-
T ss_pred             eEEeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC---------CCcceEEEEcccCEEEECccCCCCC
Confidence            345545566688999987653     36789999999999988755         677999999999999999996542 


Q ss_pred             --cceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceee-CCCCCcccccee--ecCCcEEEEEEeccCCce
Q 039497          195 --WPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV-TPPGVHCFTPAA--FHDGKRLAVATRRKNRNF  268 (642)
Q Consensus       195 --~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~--SpdG~~l~~~~~~~~~~~  268 (642)
                        ...++|+++ ++|+..    ..+|+++++.+.        +.+.| ..++.......|  ..|+++++.....+. ..
T Consensus        83 ~~g~~~s~~~~~~~Yv~~----~~~l~~vdL~T~--------e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~-d~  149 (386)
T PF14583_consen   83 TFGGFLSPDDRALYYVKN----GRSLRRVDLDTL--------EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE-DW  149 (386)
T ss_dssp             TTT-EE-TTSSEEEEEET----TTEEEEEETTT----------EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG-G-
T ss_pred             ccceEEecCCCeEEEEEC----CCeEEEEECCcC--------cEEEEEECCcccccccceeeCCCccEEEEEEEeeh-hc
Confidence              358889985 555552    138999999997        44443 223322222333  457877766543221 00


Q ss_pred             eeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC-CCceeEEeeeCCCccEEcC-CCCEEEE
Q 039497          269 RHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS-PVKELRMLRLNGSFPSFSP-DGGLIVF  346 (642)
Q Consensus       269 ~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp-dg~~l~~  346 (642)
                      ..+.-|+-       ... .+..                +....+....++. ....+........++.+|| |...|+|
T Consensus       150 ~~l~~~~~-------f~e-~~~a----------------~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f  205 (386)
T PF14583_consen  150 KPLTKWKG-------FRE-FYEA----------------RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF  205 (386)
T ss_dssp             ----SHHH-------HHH-HHHC-------------------EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred             cCccccHH-------HHH-HHhh----------------CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence            00000000       000 0000                0001111122222 2111111111224678888 4677888


Q ss_pred             EecC---CCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          347 NHDF---ELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       347 ~~~~---~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                      +.+.   ....+||+++.+++..+.+..   ...+.+-.|+|||+.|+|....    .......|+.++.  +     .+
T Consensus       206 CHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~----~~~~~~~i~~~d~--~-----t~  274 (386)
T PF14583_consen  206 CHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT----PGGQDFWIAGYDP--D-----TG  274 (386)
T ss_dssp             EE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEE----TTT--EEEEEE-T--T-----T-
T ss_pred             eccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeec----CCCCceEEEeeCC--C-----CC
Confidence            7653   224589999999998777755   4456678999999999998752    2344556777766  3     23


Q ss_pred             CccccceEEccccCCCCccCcEECCCCCeEEEEeCCC-------------CceeEEEEECCCCccccceeeCCCC-----
Q 039497          421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS-------------GHKNLFVLDAVNGEFNGDIRQLTDG-----  482 (642)
Q Consensus       421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~-------------g~~~l~~~d~~~g~~~~~~~~l~~~-----  482 (642)
                           ..+.+...+  ...++.-|+||+.++--....             +..-||++++.+++.    ..|..+     
T Consensus       275 -----~~~~~~~~p--~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~----~~l~~h~~sw~  343 (386)
T PF14583_consen  275 -----ERRRLMEMP--WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF----RKLARHDTSWK  343 (386)
T ss_dssp             ------EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE----EEEEE------
T ss_pred             -----CceEEEeCC--ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce----eeeeeccCcce
Confidence                 334444333  355788899999887654321             234678889887774    333221     


Q ss_pred             ------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          483 ------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       483 ------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                            .....+|.|||||++|+|.++..     +...||.+++.
T Consensus       344 v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~-----G~~~vY~v~i~  383 (386)
T PF14583_consen  344 VLDGDRQVTHPHPSFSPDGKWVLFRSDME-----GPPAVYLVEIP  383 (386)
T ss_dssp             -BTTBSSTT----EE-TTSSEEEEEE-TT-----SS-EEEEEE--
T ss_pred             eecCCCccCCCCCccCCCCCEEEEECCCC-----CCccEEEEeCc
Confidence                  11345789999999999999986     67889998874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.71  E-value=8.1e-14  Score=139.64  Aligned_cols=289  Identities=17%  Similarity=0.178  Sum_probs=171.3

Q ss_pred             EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497          204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH  283 (642)
Q Consensus       204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~  283 (642)
                      ++++. ..++  .|+.++..++.       ....+.. ......++|+|||+.++++...    ...+.+||+...    
T Consensus         3 ~~~s~-~~d~--~v~~~d~~t~~-------~~~~~~~-~~~~~~l~~~~dg~~l~~~~~~----~~~v~~~d~~~~----   63 (300)
T TIGR03866         3 AYVSN-EKDN--TISVIDTATLE-------VTRTFPV-GQRPRGITLSKDGKLLYVCASD----SDTIQVIDLATG----   63 (300)
T ss_pred             EEEEe-cCCC--EEEEEECCCCc-------eEEEEEC-CCCCCceEECCCCCEEEEEECC----CCeEEEEECCCC----
Confidence            44444 4456  67777777662       2233332 2235568899999987664332    236777776211    


Q ss_pred             ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497          284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG  363 (642)
Q Consensus       284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~  363 (642)
                                +.+                   ..+...        .......|+|+|+.++....  ....|+++|+.+
T Consensus        64 ----------~~~-------------------~~~~~~--------~~~~~~~~~~~g~~l~~~~~--~~~~l~~~d~~~  104 (300)
T TIGR03866        64 ----------EVI-------------------GTLPSG--------PDPELFALHPNGKILYIANE--DDNLVTVIDIET  104 (300)
T ss_pred             ----------cEE-------------------EeccCC--------CCccEEEECCCCCEEEEEcC--CCCeEEEEECCC
Confidence                      100                   000000        01123578999997766543  235799999987


Q ss_pred             CCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE
Q 039497          364 SKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS  442 (642)
Q Consensus       364 ~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  442 (642)
                      .+...... ......+.|+|||+.+++....      ...+.+|+...         +.    ....+...  .....+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~------~~~~~~~d~~~---------~~----~~~~~~~~--~~~~~~~  163 (300)
T TIGR03866       105 RKVLAEIPVGVEPEGMAVSPDGKIVVNTSET------TNMAHFIDTKT---------YE----IVDNVLVD--QRPRFAE  163 (300)
T ss_pred             CeEEeEeeCCCCcceEEECCCCCEEEEEecC------CCeEEEEeCCC---------Ce----EEEEEEcC--CCccEEE
Confidence            65333222 3346778999999998887631      23344444422         21    11222211  2345689


Q ss_pred             ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-------CCcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497          443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL  515 (642)
Q Consensus       443 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l  515 (642)
                      |+|||++|++.+..+  ..|++||+.+++.   +..+...       ......+.|+|||+.+++.....       ..|
T Consensus       164 ~s~dg~~l~~~~~~~--~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-------~~i  231 (300)
T TIGR03866       164 FTADGKELWVSSEIG--GTVSVIDVATRKV---IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-------NRV  231 (300)
T ss_pred             ECCCCCEEEEEcCCC--CEEEEEEcCccee---eeeeeecccccccccCCccceEECCCCCEEEEEcCCC-------CeE
Confidence            999999988776433  3799999998874   3443311       11123578999999876654432       248


Q ss_pred             EEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-ee
Q 039497          516 YVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RR  594 (642)
Q Consensus       516 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~  594 (642)
                      .+||+.+++.......+  .       .+..+.|+|||++|+.+....                +.|.+||+.++++ .+
T Consensus       232 ~v~d~~~~~~~~~~~~~--~-------~~~~~~~~~~g~~l~~~~~~~----------------~~i~v~d~~~~~~~~~  286 (300)
T TIGR03866       232 AVVDAKTYEVLDYLLVG--Q-------RVWQLAFTPDEKYLLTTNGVS----------------NDVSVIDVAALKVIKS  286 (300)
T ss_pred             EEEECCCCcEEEEEEeC--C-------CcceEEECCCCCEEEEEcCCC----------------CeEEEEECCCCcEEEE
Confidence            99999877665433222  2       356899999999988765432                2799999998874 55


Q ss_pred             ccCCCCCCCCcEEec
Q 039497          595 LTWNGYENGTPAWHP  609 (642)
Q Consensus       595 lt~~~~~~~~~~~s~  609 (642)
                      +.. +.....++++|
T Consensus       287 ~~~-~~~~~~~~~~~  300 (300)
T TIGR03866       287 IKV-GRLPWGVVVRP  300 (300)
T ss_pred             EEc-ccccceeEeCC
Confidence            543 34445666654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.71  E-value=1.4e-15  Score=144.77  Aligned_cols=267  Identities=16%  Similarity=0.120  Sum_probs=191.0

Q ss_pred             CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCC--eEEEEEecCCCceEE
Q 039497          143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDS--TIYFHRQADDGWWSI  217 (642)
Q Consensus       143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg--~~~~~~~~~~g~~~l  217 (642)
                      ....||+|++.||..+..+            .+-+|...+....+....+.   +.+.|+|..  .-+++. ..||...|
T Consensus       179 s~~~fS~ds~~laT~swsG------------~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~-s~Dgtvkl  245 (459)
T KOG0272|consen  179 SGCSFSRDSKHLATGSWSG------------LVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATA-SADGTVKL  245 (459)
T ss_pred             eeeEeecCCCeEEEeecCC------------ceeEeecCCcceeEEEeccccceeeEEEccCCCccceeee-ccCCceee
Confidence            3468999999999988765            67788888886666655443   456999983  344444 67999999


Q ss_pred             EEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEE
Q 039497          218 FRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIG  297 (642)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~  297 (642)
                      |.++..+         ....++++...+..++|.|+|++|+.+.-+.     .-++||+.+......             
T Consensus       246 w~~~~e~---------~l~~l~gH~~RVs~VafHPsG~~L~TasfD~-----tWRlWD~~tk~ElL~-------------  298 (459)
T KOG0272|consen  246 WKLSQET---------PLQDLEGHLARVSRVAFHPSGKFLGTASFDS-----TWRLWDLETKSELLL-------------  298 (459)
T ss_pred             eccCCCc---------chhhhhcchhhheeeeecCCCceeeeccccc-----chhhcccccchhhHh-------------
Confidence            9887654         4677888888899999999999999865444     778888843221100             


Q ss_pred             EEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCc
Q 039497          298 YHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTA  375 (642)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~  375 (642)
                       .                   .+-       .......+|.|||..++..+ -+....|  +|+.++.......  ...+
T Consensus       299 -Q-------------------EGH-------s~~v~~iaf~~DGSL~~tGG-lD~~~Rv--WDlRtgr~im~L~gH~k~I  348 (459)
T KOG0272|consen  299 -Q-------------------EGH-------SKGVFSIAFQPDGSLAATGG-LDSLGRV--WDLRTGRCIMFLAGHIKEI  348 (459)
T ss_pred             -h-------------------ccc-------ccccceeEecCCCceeeccC-ccchhhe--eecccCcEEEEecccccce
Confidence             0                   000       01113568999998555432 2333444  4777776544443  5568


Q ss_pred             eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC-CCeEEEEe
Q 039497          376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD-GKFLVFRS  454 (642)
Q Consensus       376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD-g~~l~~~~  454 (642)
                      ..+.|||+|-.|+..+       .++..+||++..        ..     ....+..+. ..+..+.|+|+ |++|+..+
T Consensus       349 ~~V~fsPNGy~lATgs-------~Dnt~kVWDLR~--------r~-----~ly~ipAH~-nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  349 LSVAFSPNGYHLATGS-------SDNTCKVWDLRM--------RS-----ELYTIPAHS-NLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             eeEeECCCceEEeecC-------CCCcEEEeeecc--------cc-----cceeccccc-chhhheEecccCCeEEEEcc
Confidence            8999999999998876       488999999976        12     556666666 78899999995 55555444


Q ss_pred             CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCC
Q 039497          455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN  506 (642)
Q Consensus       455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~  506 (642)
                      . ++  .+-+|...+.+.   ++.|..+...+.++.+|+||.+|+..+-+..
T Consensus       408 y-D~--t~kiWs~~~~~~---~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT  453 (459)
T KOG0272|consen  408 Y-DN--TVKIWSTRTWSP---LKSLAGHEGKVISLDISPDSQAIATSSFDRT  453 (459)
T ss_pred             c-Cc--ceeeecCCCccc---chhhcCCccceEEEEeccCCceEEEeccCce
Confidence            3 33  677788888887   8889999899999999999999998887653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.68  E-value=4.9e-15  Score=131.59  Aligned_cols=225  Identities=15%  Similarity=0.088  Sum_probs=165.7

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      ..+.++||++.|+.    .+..+|.++|+.++...++..    ...+..+.|--||+++|..+       +++.++||++
T Consensus        44 NrLeiTpdk~~LAa----a~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs-------eDgt~kIWdl  112 (311)
T KOG0315|consen   44 NRLEITPDKKDLAA----AGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS-------EDGTVKIWDL  112 (311)
T ss_pred             eeEEEcCCcchhhh----ccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC-------CCceEEEEec
Confidence            35678999999988    556899999999888755544    46788999999999998776       4899999999


Q ss_pred             EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCccc
Q 039497          409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDT  487 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~  487 (642)
                      ..  -            ...++.... ..+..+...|+-..|+... ++|  .|++||+.....   ..++. .....+.
T Consensus       113 R~--~------------~~qR~~~~~-spVn~vvlhpnQteLis~d-qsg--~irvWDl~~~~c---~~~liPe~~~~i~  171 (311)
T KOG0315|consen  113 RS--L------------SCQRNYQHN-SPVNTVVLHPNQTELISGD-QSG--NIRVWDLGENSC---THELIPEDDTSIQ  171 (311)
T ss_pred             cC--c------------ccchhccCC-CCcceEEecCCcceEEeec-CCC--cEEEEEccCCcc---ccccCCCCCccee
Confidence            76  2            344444444 5677889999888876543 333  899999976543   34444 3344667


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc----eEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG----LRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      ++...|||+.|+-..+.++        .|+|++-+..    ++++++. .+++       ......+|||+++|+..+.+
T Consensus       172 sl~v~~dgsml~a~nnkG~--------cyvW~l~~~~~~s~l~P~~k~~ah~~-------~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  172 SLTVMPDGSMLAAANNKGN--------CYVWRLLNHQTASELEPVHKFQAHNG-------HILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             eEEEcCCCcEEEEecCCcc--------EEEEEccCCCccccceEhhheecccc-------eEEEEEECCCCcEEEeecCC
Confidence            8899999999988887775        9999986542    2333332 2333       56778999999999999887


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEcCC--CceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          563 GAVMAEPVSWPNQFQPYGDLYVVKLDG--SGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      .                 .++.|+.++  +...+|+.+..++.+.+||.||+||++..+.+
T Consensus       237 k-----------------tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  237 K-----------------TVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             c-----------------eEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence            6                 455555554  34567777878889999999999999876543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.68  E-value=3.5e-13  Score=135.00  Aligned_cols=265  Identities=16%  Similarity=0.132  Sum_probs=161.4

Q ss_pred             eEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceee
Q 039497          174 DIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAF  251 (642)
Q Consensus       174 ~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  251 (642)
                      .|++|++.+++..+......  ..+.|+|||+.+|+....++  .|+.++..++        +.............++++
T Consensus        12 ~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~--~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~   81 (300)
T TIGR03866        12 TISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSD--TIQVIDLATG--------EVIGTLPSGPDPELFALH   81 (300)
T ss_pred             EEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCC--eEEEEECCCC--------cEEEeccCCCCccEEEEC
Confidence            78899998887655544322  34699999976655434445  6777787776        333222222234567889


Q ss_pred             cCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeC
Q 039497          252 HDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLN  331 (642)
Q Consensus       252 pdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (642)
                      |||+.+++....    ...+.+||+...              +.+..                   +..        ...
T Consensus        82 ~~g~~l~~~~~~----~~~l~~~d~~~~--------------~~~~~-------------------~~~--------~~~  116 (300)
T TIGR03866        82 PNGKILYIANED----DNLVTVIDIETR--------------KVLAE-------------------IPV--------GVE  116 (300)
T ss_pred             CCCCEEEEEcCC----CCeEEEEECCCC--------------eEEeE-------------------eeC--------CCC
Confidence            999987664322    236777776221              00000                   000        011


Q ss_pred             CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          332 GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       332 ~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ...+.|+|||+.+++....  ...++.++..+++...... ......+.|+|||+.|++...      .++.+.+|++..
T Consensus       117 ~~~~~~~~dg~~l~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~i~d~~~  188 (300)
T TIGR03866       117 PEGMAVSPDGKIVVNTSET--TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE------IGGTVSVIDVAT  188 (300)
T ss_pred             cceEEECCCCCEEEEEecC--CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC------CCCEEEEEEcCc
Confidence            1245899999988876532  2346667877765433222 445567899999999887652      356788888754


Q ss_pred             ecCCCCCCCCCccccceEEcccc------CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497          411 QLDPSDDNNREEIPCDVKILTKE------ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                              +.     ....+...      .......+.|+|||++++.....  ...|.+||+.+++.   ...+.. ..
T Consensus       189 --------~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--~~~i~v~d~~~~~~---~~~~~~-~~  249 (300)
T TIGR03866       189 --------RK-----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--ANRVAVVDAKTYEV---LDYLLV-GQ  249 (300)
T ss_pred             --------ce-----eeeeeeecccccccccCCccceEECCCCCEEEEEcCC--CCeEEEEECCCCcE---EEEEEe-CC
Confidence                    11     22222211      00123357899999987665432  23699999988875   333332 23


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                      ....+.|+|||++|+......       ..|.+||+.+++...
T Consensus       250 ~~~~~~~~~~g~~l~~~~~~~-------~~i~v~d~~~~~~~~  285 (300)
T TIGR03866       250 RVWQLAFTPDEKYLLTTNGVS-------NDVSVIDVAALKVIK  285 (300)
T ss_pred             CcceEEECCCCCEEEEEcCCC-------CeEEEEECCCCcEEE
Confidence            566789999999988765432       239999999887543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.68  E-value=3e-14  Score=129.60  Aligned_cols=271  Identities=14%  Similarity=0.060  Sum_probs=184.5

Q ss_pred             cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEE
Q 039497          278 LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIK  357 (642)
Q Consensus       278 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~  357 (642)
                      .++...+....|++|+++|+..+.++.      +++|-.-...++..+.+.......-+|+|.|+.|+...- ++.-.||
T Consensus        52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGk------lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGL-dN~Csiy  124 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDSRRIVSASQDGK------LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGL-DNKCSIY  124 (343)
T ss_pred             cccccceeeeEecCCcCeEEeeccCCe------EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCc-CceeEEE
Confidence            344444555566777766666655555      444444333343333333333345689999999988543 3334444


Q ss_pred             EEECCCC--C-----eeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497          358 IAKSDGS--K-----RWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI  429 (642)
Q Consensus       358 ~~d~~~~--~-----~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  429 (642)
                        ++...  +     .+.+.. .+.+....|-+|+. |+..+       ++....+|+++.        +.     ..+.
T Consensus       125 --~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-ilT~S-------GD~TCalWDie~--------g~-----~~~~  181 (343)
T KOG0286|consen  125 --PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-ILTGS-------GDMTCALWDIET--------GQ-----QTQV  181 (343)
T ss_pred             --ecccccccccceeeeeecCccceeEEEEEcCCCc-eEecC-------CCceEEEEEccc--------ce-----EEEE
Confidence              44432  1     112222 55677778887665 55554       478899999987        34     6677


Q ss_pred             ccccCCCCccCcEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497          430 LTKEETGNNAFPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       430 l~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~  508 (642)
                      +..+. +.+..+.++| |++.++-.+-   +..-++||+..|..   .+.+..+...++.+.|.|+|.-++..+++..  
T Consensus       182 f~GH~-gDV~slsl~p~~~ntFvSg~c---D~~aklWD~R~~~c---~qtF~ghesDINsv~ffP~G~afatGSDD~t--  252 (343)
T KOG0286|consen  182 FHGHT-GDVMSLSLSPSDGNTFVSGGC---DKSAKLWDVRSGQC---VQTFEGHESDINSVRFFPSGDAFATGSDDAT--  252 (343)
T ss_pred             ecCCc-ccEEEEecCCCCCCeEEeccc---ccceeeeeccCcce---eEeecccccccceEEEccCCCeeeecCCCce--
Confidence            77776 8889999999 9998776552   34678999998886   5667778888999999999998888877765  


Q ss_pred             CCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc
Q 039497          509 NVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL  587 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  587 (642)
                            ..+||+...+...+... ....       .+.++.||..|+.|+..+.+.                 .+.+||.
T Consensus       253 ------cRlyDlRaD~~~a~ys~~~~~~-------gitSv~FS~SGRlLfagy~d~-----------------~c~vWDt  302 (343)
T KOG0286|consen  253 ------CRLYDLRADQELAVYSHDSIIC-------GITSVAFSKSGRLLFAGYDDF-----------------TCNVWDT  302 (343)
T ss_pred             ------eEEEeecCCcEEeeeccCcccC-------CceeEEEcccccEEEeeecCC-----------------ceeEeec
Confidence                  78889987665444432 1111       578999999999887776654                 6777775


Q ss_pred             C-CCceeeccCCCCCCCCcEEecCCceEEee
Q 039497          588 D-GSGLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       588 ~-~~~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      = +.....|..++..+..+..+|||..+.+.
T Consensus       303 lk~e~vg~L~GHeNRvScl~~s~DG~av~Tg  333 (343)
T KOG0286|consen  303 LKGERVGVLAGHENRVSCLGVSPDGMAVATG  333 (343)
T ss_pred             cccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence            4 44567888888888899999999888764

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.64  E-value=1.2e-14  Score=138.57  Aligned_cols=264  Identities=12%  Similarity=0.071  Sum_probs=182.5

Q ss_pred             ccccceeecCCcEEEEEEeccCCceeeEEEEEe--------ecCCCCcccCCeecCC--CCEEEEEEeecCCCCCCcccc
Q 039497          244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL--------TLNPNFHHYNPFVSAN--SEFIGYHRFRGESTEGQSTIP  313 (642)
Q Consensus       244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~--------~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~~~~~~~  313 (642)
                      .+....||.|++.|+...-.+     .+.+|..        ..++...+....|.|.  +..|+....++.      ..+
T Consensus       177 Pis~~~fS~ds~~laT~swsG-----~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt------vkl  245 (459)
T KOG0272|consen  177 PISGCSFSRDSKHLATGSWSG-----LVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT------VKL  245 (459)
T ss_pred             cceeeEeecCCCeEEEeecCC-----ceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCc------eee
Confidence            455567899999999866554     6677776        3456677778899997  556888777666      333


Q ss_pred             eEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe--ecCCceeeeeecCCCEEEEEE
Q 039497          314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI--KDRTAFYNSWSPTEKHVIYTS  391 (642)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~spdg~~l~~~~  391 (642)
                      |-..-......++.........+|+|+|++|+..+. +....||  |+.++..-.+.  +...+..++|.|||..++...
T Consensus       246 w~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf-D~tWRlW--D~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG  322 (459)
T KOG0272|consen  246 WKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF-DSTWRLW--DLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG  322 (459)
T ss_pred             eccCCCcchhhhhcchhhheeeeecCCCceeeeccc-ccchhhc--ccccchhhHhhcccccccceeEecCCCceeeccC
Confidence            433222222222211122246789999999988776 3445555  66665533222  266789999999999776654


Q ss_pred             cCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497          392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE  471 (642)
Q Consensus       392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~  471 (642)
                      .       +...+||++..        +.     .+..|..+. ..+..+.|||+|-.|+..+.+   ...-+||+..-.
T Consensus       323 l-------D~~~RvWDlRt--------gr-----~im~L~gH~-k~I~~V~fsPNGy~lATgs~D---nt~kVWDLR~r~  378 (459)
T KOG0272|consen  323 L-------DSLGRVWDLRT--------GR-----CIMFLAGHI-KEILSVAFSPNGYHLATGSSD---NTCKVWDLRMRS  378 (459)
T ss_pred             c-------cchhheeeccc--------Cc-----EEEEecccc-cceeeEeECCCceEEeecCCC---CcEEEeeecccc
Confidence            3       67789999987        45     677777766 788899999999888876643   367788887555


Q ss_pred             cccceeeCCCCCCcccceeEec-CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEc
Q 039497          472 FNGDIRQLTDGPWIDTMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS  550 (642)
Q Consensus       472 ~~~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S  550 (642)
                      .   +..+..+...+..+.|+| .|++|+..+.++.        +.+|...+...-+... ++++       .+.++.+|
T Consensus       379 ~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t--------~kiWs~~~~~~~ksLa-GHe~-------kV~s~Dis  439 (459)
T KOG0272|consen  379 E---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT--------VKIWSTRTWSPLKSLA-GHEG-------KVISLDIS  439 (459)
T ss_pred             c---ceecccccchhhheEecccCCeEEEEcccCcc--------eeeecCCCcccchhhc-CCcc-------ceEEEEec
Confidence            4   677888877889999999 5566666665554        7777766654433332 6666       78889999


Q ss_pred             CCCCEEEEEEecCC
Q 039497          551 ADGEWLLFTANLGA  564 (642)
Q Consensus       551 ~Dg~~l~~~~~~~~  564 (642)
                      +||..|+..+.+..
T Consensus       440 ~d~~~i~t~s~DRT  453 (459)
T KOG0272|consen  440 PDSQAIATSSFDRT  453 (459)
T ss_pred             cCCceEEEeccCce
Confidence            99999998886643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.63  E-value=2e-13  Score=123.64  Aligned_cols=225  Identities=13%  Similarity=0.130  Sum_probs=155.2

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ....++||++.+-.+-   ...+.++|+.+++.++...  ...+..++||||.++|+..++       +..+.+|++-. 
T Consensus        68 dv~~s~dg~~alS~sw---D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr-------DkTiklwnt~g-  136 (315)
T KOG0279|consen   68 DVVLSSDGNFALSASW---DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR-------DKTIKLWNTLG-  136 (315)
T ss_pred             ceEEccCCceEEeccc---cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC-------cceeeeeeecc-
Confidence            4578999996555433   3678888999987666554  567889999999999998875       78899999854 


Q ss_pred             cCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                              .     ....+.... ...+..+.|+|.....++.+.. -+..+.+||+.+-+.   ......+.++++.+.
T Consensus       137 --------~-----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s-~DktvKvWnl~~~~l---~~~~~gh~~~v~t~~  199 (315)
T KOG0279|consen  137 --------V-----CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS-WDKTVKVWNLRNCQL---RTTFIGHSGYVNTVT  199 (315)
T ss_pred             --------c-----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-CCceEEEEccCCcch---hhccccccccEEEEE
Confidence                    2     334443332 3678889999985332222211 345899999997765   455666778889999


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      +||||..++....++        ++++||++.++-  +...+...       .+.+++|||.--+|......        
T Consensus       200 vSpDGslcasGgkdg--------~~~LwdL~~~k~--lysl~a~~-------~v~sl~fspnrywL~~at~~--------  254 (315)
T KOG0279|consen  200 VSPDGSLCASGGKDG--------EAMLWDLNEGKN--LYSLEAFD-------IVNSLCFSPNRYWLCAATAT--------  254 (315)
T ss_pred             ECCCCCEEecCCCCc--------eEEEEEccCCce--eEeccCCC-------eEeeEEecCCceeEeeccCC--------
Confidence            999999888755554        499999987655  33334344       57899999987766554432        


Q ss_pred             CCCCCCCCCCcEEEEEcCCCce-eeccCC--C-----CC--CCCcEEecCCceEEeecCCC
Q 039497          571 SWPNQFQPYGDLYVVKLDGSGL-RRLTWN--G-----YE--NGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~~~~~~~-~~lt~~--~-----~~--~~~~~~s~dg~~~~~~~~~~  621 (642)
                                .|-.|+++++.. ..|.-.  +     ..  -.+++||+||+.|++....+
T Consensus       255 ----------sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  255 ----------SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             ----------ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence                      577778877652 222211  1     11  25789999999998766554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=2.8e-12  Score=121.27  Aligned_cols=285  Identities=14%  Similarity=0.231  Sum_probs=178.5

Q ss_pred             ceeeEEEEEee-----------cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccce-EeeccCCCceeEEeeeCC--
Q 039497          267 NFRHIEIYDLT-----------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH-LEPVASPVKELRMLRLNG--  332 (642)
Q Consensus       267 ~~~~i~~~d~~-----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--  332 (642)
                      ....|+.|++.           .......+..+|+|++++|+.....+...   ....+ +...++....+......+  
T Consensus        14 ~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~g---gvaay~iD~~~G~Lt~ln~~~~~g~~   90 (346)
T COG2706          14 ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEG---GVAAYRIDPDDGRLTFLNRQTLPGSP   90 (346)
T ss_pred             CCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcC---cEEEEEEcCCCCeEEEeeccccCCCC
Confidence            34567777773           23345566778999999998887664421   12222 222222222221111111  


Q ss_pred             -CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE---e-ecC----------CceeeeeecCCCEEEEEEcCCCcc
Q 039497          333 -SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL---I-KDR----------TAFYNSWSPTEKHVIYTSTGPIFQ  397 (642)
Q Consensus       333 -~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l---~-~~~----------~~~~~~~spdg~~l~~~~~~~~~~  397 (642)
                       .+.+++++|+.|+......+...++-++.++ ....+   . ..+          ..+...+.||+++|+....+    
T Consensus        91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG-~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG----  165 (346)
T COG2706          91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADG-SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG----  165 (346)
T ss_pred             CeEEEECCCCCEEEEEEccCceEEEEEcccCC-ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----
Confidence             5678899999887777655555555554443 22222   1 112          26678999999999999854    


Q ss_pred             cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee
Q 039497          398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR  477 (642)
Q Consensus       398 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~  477 (642)
                        ..++.+|+++.        +..+ +.....+.  +.....++.|+|+|++.+....-++.-.+|.++...|+. ..++
T Consensus       166 --~Dri~~y~~~d--------g~L~-~~~~~~v~--~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~-~~lQ  231 (346)
T COG2706         166 --TDRIFLYDLDD--------GKLT-PADPAEVK--PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF-EELQ  231 (346)
T ss_pred             --CceEEEEEccc--------Cccc-cccccccC--CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE-EEee
Confidence              67888888864        2211 11222232  224678999999999998888877777888888776774 1222


Q ss_pred             eCCCC------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcC
Q 039497          478 QLTDG------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA  551 (642)
Q Consensus       478 ~l~~~------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~  551 (642)
                      .+...      ......+..||||++||.. +++.    +...+|.+|..+++++.+......+.      .+.+..|++
T Consensus       232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYas-NRg~----dsI~~f~V~~~~g~L~~~~~~~teg~------~PR~F~i~~  300 (346)
T COG2706         232 TIDTLPEDFTGTNWAAAIHISPDGRFLYAS-NRGH----DSIAVFSVDPDGGKLELVGITPTEGQ------FPRDFNINP  300 (346)
T ss_pred             eeccCccccCCCCceeEEEECCCCCEEEEe-cCCC----CeEEEEEEcCCCCEEEEEEEeccCCc------CCccceeCC
Confidence            22221      1223456889999976555 4432    56677788888888877665444441      257889999


Q ss_pred             CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC
Q 039497          552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN  598 (642)
Q Consensus       552 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~  598 (642)
                      +|+.|+....+.+..              .+|..|-.+|+++.+...
T Consensus       301 ~g~~Liaa~q~sd~i--------------~vf~~d~~TG~L~~~~~~  333 (346)
T COG2706         301 SGRFLIAANQKSDNI--------------TVFERDKETGRLTLLGRY  333 (346)
T ss_pred             CCCEEEEEccCCCcE--------------EEEEEcCCCceEEecccc
Confidence            999998887766532              778888888888877653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.62  E-value=3.5e-13  Score=133.14  Aligned_cols=267  Identities=20%  Similarity=0.190  Sum_probs=174.6

Q ss_pred             eCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecCCCCCC
Q 039497          238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQ  309 (642)
Q Consensus       238 l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~  309 (642)
                      +..+...+..+.|+|+|++|++....     ..+.+|++..        .+........|+|+++.+++...++.     
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~-----g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-----   74 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGD-----GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT-----   74 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecC-----cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCe-----
Confidence            33444567788999999999886543     3788998832        22333457789999988888755433     


Q ss_pred             cccceEeeccC--CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCC
Q 039497          310 STIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEK  385 (642)
Q Consensus       310 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~  385 (642)
                       ..+|  .+..  ....+.........+.|+++++.++...   ....|.++++..++......  ...+..+.|+|+++
T Consensus        75 -i~i~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  148 (289)
T cd00200          75 -IRLW--DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT  148 (289)
T ss_pred             -EEEE--EcCcccceEEEeccCCcEEEEEEcCCCCEEEEec---CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence             2222  2222  1111111111224568899977555533   24678889988655444333  44688999999988


Q ss_pred             EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497          386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL  465 (642)
Q Consensus       386 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~  465 (642)
                      .++...       .++.+.+|++..        +.     ....+..+. ..+..+.|+|+++.|++.+.   ...|.+|
T Consensus       149 ~l~~~~-------~~~~i~i~d~~~--------~~-----~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~---~~~i~i~  204 (289)
T cd00200         149 FVASSS-------QDGTIKLWDLRT--------GK-----CVATLTGHT-GEVNSVAFSPDGEKLLSSSS---DGTIKLW  204 (289)
T ss_pred             EEEEEc-------CCCcEEEEEccc--------cc-----cceeEecCc-cccceEEECCCcCEEEEecC---CCcEEEE
Confidence            776654       257888998864        12     334444333 56778999999999988875   3479999


Q ss_pred             ECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccccc
Q 039497          466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN  545 (642)
Q Consensus       466 d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~  545 (642)
                      |+.+++.   ...+..+...+..+.|+|++++++....++.        |++|++..++...... ....       .+.
T Consensus       205 d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------i~i~~~~~~~~~~~~~-~~~~-------~i~  265 (289)
T cd00200         205 DLSTGKC---LGTLRGHENGVNSVAFSPDGYLLASGSEDGT--------IRVWDLRTGECVQTLS-GHTN-------SVT  265 (289)
T ss_pred             ECCCCce---ecchhhcCCceEEEEEcCCCcEEEEEcCCCc--------EEEEEcCCceeEEEcc-ccCC-------cEE
Confidence            9987775   4555455556778899999776666553443        9999998665544333 3333       567


Q ss_pred             ceEEcCCCCEEEEEEecC
Q 039497          546 HVCFSADGEWLLFTANLG  563 (642)
Q Consensus       546 ~~~~S~Dg~~l~~~~~~~  563 (642)
                      .+.|+++++.|+..+.++
T Consensus       266 ~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         266 SLAWSPDGKRLASGSADG  283 (289)
T ss_pred             EEEECCCCCEEEEecCCC
Confidence            899999999888777654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.61  E-value=3.8e-12  Score=129.84  Aligned_cols=428  Identities=13%  Similarity=0.044  Sum_probs=247.8

Q ss_pred             eEEEEccCCceEeccc--CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cc
Q 039497          122 LYSTDLKASKFTRLTP--YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WP  196 (642)
Q Consensus       122 l~~~~~~~~~~~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~  196 (642)
                      |-.+.+++|+..+.-.  +.+...-.+|+|-|..+|....+.            .+-+|++.++.-..-....++   .+
T Consensus        86 lrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~------------~v~VWdi~~~~~th~fkG~gGvVssl  153 (775)
T KOG0319|consen   86 LRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADG------------RVKVWDIKNGYCTHSFKGHGGVVSSL  153 (775)
T ss_pred             EEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccc------------eEEEEEeeCCEEEEEecCCCceEEEE
Confidence            3444777776554432  344445578999997777765444            788999998876655554443   23


Q ss_pred             eEeeCC--eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497          197 TWSGDS--TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY  274 (642)
Q Consensus       197 ~wspdg--~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~  274 (642)
                      .|.|+-  .++++. +.++...+|.+.....        ....+..+...+..+++++|+..++++.+++     -+.+|
T Consensus       154 ~F~~~~~~~lL~sg-~~D~~v~vwnl~~~~t--------cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk-----vi~vw  219 (775)
T KOG0319|consen  154 LFHPHWNRWLLASG-ATDGTVRVWNLNDKRT--------CLHTMILHKSAVTSLAFSEDSLELLSVGRDK-----VIIVW  219 (775)
T ss_pred             EeCCccchhheeec-CCCceEEEEEcccCch--------HHHHHHhhhhheeeeeeccCCceEEEeccCc-----EEEEe
Confidence            677776  355555 6677555554443322        2344556666788899999999999977665     89999


Q ss_pred             EeecCC-------CCcccCCeecCC-----CCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee---CCC-ccEEc
Q 039497          275 DLTLNP-------NFHHYNPFVSAN-----SEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL---NGS-FPSFS  338 (642)
Q Consensus       275 d~~~~~-------~~~~~~~~~spD-----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~s  338 (642)
                      |+....       .-.......-++     |.++.....++.      .  .+....+..-.....+.   ... .....
T Consensus       220 d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~------~--~~~d~es~~~~~~~~~~~~~e~~~~~~~~  291 (775)
T KOG0319|consen  220 DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGV------V--QYWDSESGKCVYKQRQSDSEEIDHLLAIE  291 (775)
T ss_pred             ehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCce------E--EEEecccchhhhhhccCCchhhhcceecc
Confidence            992110       001111222222     223333322221      1  11111111000000000   011 11223


Q ss_pred             CCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceee-eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497          339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS  415 (642)
Q Consensus       339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~-~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  415 (642)
                      ..++.++...    ..+|+++|.++.+...-..  +..+.++ .|-|+.++|++.++       .+.+++|....     
T Consensus       292 ~~~~~l~vta----eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN-------s~~lr~y~~~~-----  355 (775)
T KOG0319|consen  292 SMSQLLLVTA----EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN-------SPELRLYTLPT-----  355 (775)
T ss_pred             ccCceEEEEc----cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC-------CCceEEEecCC-----
Confidence            3444444433    4789999888766543322  5556666 45778889988875       67888886543     


Q ss_pred             CCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC
Q 039497          416 DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG  495 (642)
Q Consensus       416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG  495 (642)
                          -     ..+.+..+. ..+.++....+|-.| .+..++..-.||+++-...+. ..+.+.+.+...+..++++..|
T Consensus       356 ----~-----~c~ii~GH~-e~vlSL~~~~~g~ll-at~sKD~svilWr~~~~~~~~-~~~a~~~gH~~svgava~~~~~  423 (775)
T KOG0319|consen  356 ----S-----YCQIIPGHT-EAVLSLDVWSSGDLL-ATGSKDKSVILWRLNNNCSKS-LCVAQANGHTNSVGAVAGSKLG  423 (775)
T ss_pred             ----C-----ceEEEeCch-hheeeeeecccCcEE-EEecCCceEEEEEecCCcchh-hhhhhhcccccccceeeecccC
Confidence                1     445556655 666666645577444 455566666778775433332 1133445566667778888777


Q ss_pred             CEEEEEecCCCCCCCCceeEEEEeCCCCceEE--eee------cCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR--IHV------AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~------~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      --++.+...+       ..|.+|++...+...  +..      ..+..       .++.++.+|+.+.|+..+.+...  
T Consensus       424 asffvsvS~D-------~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK-------dIN~Vaia~ndkLiAT~SqDkta--  487 (775)
T KOG0319|consen  424 ASFFVSVSQD-------CTLKLWDLPKSKETAFPIVLTCRYTERAHDK-------DINCVAIAPNDKLIATGSQDKTA--  487 (775)
T ss_pred             ccEEEEecCC-------ceEEEecCCCcccccccceehhhHHHHhhcc-------cccceEecCCCceEEecccccce--
Confidence            5555444432       237888876532211  111      11222       46789999999988888877654  


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee-----------------cCCCcccccceee
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK-----------------LRLEDDIGDKLRG  630 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~-----------------~~~~~~~~~~~~~  630 (642)
                                   .||.++ +......|..|...+.++.|+|..+.++++                 .++.|+.+.++.-
T Consensus       488 -------------KiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra  553 (775)
T KOG0319|consen  488 -------------KIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA  553 (775)
T ss_pred             -------------eeeccc-CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence                         888776 555567888888888999999999999876                 4455555555555


Q ss_pred             eeccc--ceeccC
Q 039497          631 QFDEP--LWISCD  641 (642)
Q Consensus       631 ~~~~~--~~~~~~  641 (642)
                      .|=-.  ..|||+
T Consensus       554 ~F~~~~~qliS~~  566 (775)
T KOG0319|consen  554 SFIRNGKQLISAG  566 (775)
T ss_pred             eeeeCCcEEEecc
Confidence            55222  246664

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.60  E-value=6.1e-13  Score=131.45  Aligned_cols=272  Identities=16%  Similarity=0.120  Sum_probs=176.8

Q ss_pred             CCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEE
Q 039497          281 NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAK  360 (642)
Q Consensus       281 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d  360 (642)
                      ...+..+.|+|+++.|++...++.      ..+|-.........+.........+.|+|+++.|+....   ...|++++
T Consensus         9 ~~~i~~~~~~~~~~~l~~~~~~g~------i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~~   79 (289)
T cd00200           9 TGGVTCVAFSPDGKLLATGSGDGT------IKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLWD   79 (289)
T ss_pred             CCCEEEEEEcCCCCEEEEeecCcE------EEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEEE
Confidence            344556789999999888765433      233322211111111111111236789999988877653   46788889


Q ss_pred             CCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCc
Q 039497          361 SDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN  438 (642)
Q Consensus       361 ~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  438 (642)
                      +..++......  ...+..+.|+|+++.++...       .++.+.+|++..        ..     ....+..+. ..+
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~--------~~-----~~~~~~~~~-~~i  138 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSS-------RDKTIKVWDVET--------GK-----CLTTLRGHT-DWV  138 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCCCCEEEEec-------CCCeEEEEECCC--------cE-----EEEEeccCC-CcE
Confidence            88754333322  44688899999977665554       267888888864        12     334444343 567


Q ss_pred             cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEE
Q 039497          439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI  518 (642)
Q Consensus       439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~  518 (642)
                      ..+.|+|+++.++....   ...|++||+.+++.   ...+..+...+..+.|+|+++.|++.+.++.        |.+|
T Consensus       139 ~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~--------i~i~  204 (289)
T cd00200         139 NSVAFSPDGTFVASSSQ---DGTIKLWDLRTGKC---VATLTGHTGEVNSVAFSPDGEKLLSSSSDGT--------IKLW  204 (289)
T ss_pred             EEEEEcCcCCEEEEEcC---CCcEEEEEcccccc---ceeEecCccccceEEECCCcCEEEEecCCCc--------EEEE
Confidence            88999999887776552   23789999987765   4555555556788999999998988887543        9999


Q ss_pred             eCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccC
Q 039497          519 KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTW  597 (642)
Q Consensus       519 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~  597 (642)
                      |+..++...... ....       .+..+.|++++..++....++                 .|+.|+...+. ...+..
T Consensus       205 d~~~~~~~~~~~-~~~~-------~i~~~~~~~~~~~~~~~~~~~-----------------~i~i~~~~~~~~~~~~~~  259 (289)
T cd00200         205 DLSTGKCLGTLR-GHEN-------GVNSVAFSPDGYLLASGSEDG-----------------TIRVWDLRTGECVQTLSG  259 (289)
T ss_pred             ECCCCceecchh-hcCC-------ceEEEEEcCCCcEEEEEcCCC-----------------cEEEEEcCCceeEEEccc
Confidence            998755443321 2222       467899999976665544232                 78888887544 455555


Q ss_pred             CCCCCCCcEEecCCceEEeecCCC
Q 039497          598 NGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       598 ~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      +...+..+.|+++++++++....+
T Consensus       260 ~~~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         260 HTNSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             cCCcEEEEEECCCCCEEEEecCCC
Confidence            556678899999998887765443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.60  E-value=7.1e-13  Score=128.23  Aligned_cols=300  Identities=17%  Similarity=0.139  Sum_probs=200.4

Q ss_pred             ceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceee------------CCCCCccccceeecCCcEEEEEEe
Q 039497          196 PTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV------------TPPGVHCFTPAAFHDGKRLAVATR  262 (642)
Q Consensus       196 ~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~SpdG~~l~~~~~  262 (642)
                      .+|.|-.. +|.+. ..+-...+|.+......       ...++            .+....+..++|+.||..|++...
T Consensus       184 ~~WnP~~~~llasg-~~~s~ari~~l~e~~~~-------~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  184 CAWNPLRDGLLASG-SGDSTARIWNLLENSNI-------GSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             EecCchhhhhhhcc-CCccceeeeeehhhccc-------cchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            49999875 66555 44555677776542211       11100            111235778999999999999544


Q ss_pred             ccCCceeeEEEEEe-------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCcee-EEeeeCCCc
Q 039497          263 RKNRNFRHIEIYDL-------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKEL-RMLRLNGSF  334 (642)
Q Consensus       263 ~~~~~~~~i~~~d~-------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  334 (642)
                           ...+++|+.       ...+.+.+....|+.+|.+|+....++.      .++|- ...+...+. ++.....-.
T Consensus       256 -----~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~t------tilwd-~~~g~~~q~f~~~s~~~lD  323 (524)
T KOG0273|consen  256 -----DGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGT------TILWD-AHTGTVKQQFEFHSAPALD  323 (524)
T ss_pred             -----CcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCcc------EEEEe-ccCceEEEeeeeccCCccc
Confidence                 348999998       2356677888899999999988755554      33332 222222111 111112233


Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE--EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT--LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~--l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..|-.+.+++..    .....|+++.+....+..  .-+.+.+..+.|.|.|..|+.++.       +.+++||.+..  
T Consensus       324 VdW~~~~~F~ts----~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd-------D~TlkiWs~~~--  390 (524)
T KOG0273|consen  324 VDWQSNDEFATS----STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD-------DGTLKIWSMGQ--  390 (524)
T ss_pred             eEEecCceEeec----CCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC-------CCeeEeeecCC--
Confidence            566554442222    334556666665544332  223678999999999998888874       89999999865  


Q ss_pred             CCCCCCCCCccccceEEccccCCCCccCcEECCCCC---------eEEEEeCCCCceeEEEEECCCCccccceeeCCCCC
Q 039497          413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK---------FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP  483 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~---------~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~  483 (642)
                            ++     ....|..+. ..+..+.|||+|.         .|+.++   .+..|.+||+..|..   +..++.+.
T Consensus       391 ------~~-----~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sas---~dstV~lwdv~~gv~---i~~f~kH~  452 (524)
T KOG0273|consen  391 ------SN-----SVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASAS---FDSTVKLWDVESGVP---IHTLMKHQ  452 (524)
T ss_pred             ------Cc-----chhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEee---cCCeEEEEEccCCce---eEeeccCC
Confidence                  33     455565555 6677788998764         344444   234789999999987   78888998


Q ss_pred             CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      ..+..++|||+|++|++.+.++.        |.+|+...++..+-...  .+       .+..+.|+.+|.+|.....++
T Consensus       453 ~pVysvafS~~g~ylAsGs~dg~--------V~iws~~~~~l~~s~~~--~~-------~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  453 EPVYSVAFSPNGRYLASGSLDGC--------VHIWSTKTGKLVKSYQG--TG-------GIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             CceEEEEecCCCcEEEecCCCCe--------eEeccccchheeEeecC--CC-------eEEEEEEcCCCCEEEEEecCC
Confidence            89999999999999999988765        89999888776554332  22       467899999999998887765

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.60  E-value=1.1e-13  Score=127.76  Aligned_cols=341  Identities=14%  Similarity=0.117  Sum_probs=190.3

Q ss_pred             CceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec--CCCcceEeeCCeEEEEEecCCCceEEEEEe
Q 039497          144 SPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE--RGGWPTWSGDSTIYFHRQADDGWWSIFRVS  221 (642)
Q Consensus       144 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~~~~~wspdg~~~~~~~~~~g~~~l~~~~  221 (642)
                      ...|||+|+|||....             ..+.+.|..+-+..++..-  .-....|+.|...+......++..++|.+.
T Consensus        13 ~c~fSp~g~yiAs~~~-------------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~   79 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSR-------------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLV   79 (447)
T ss_pred             ceeECCCCCeeeeeee-------------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEee
Confidence            3689999999998753             3577787777665555432  223579999995444443567766676653


Q ss_pred             cCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEe
Q 039497          222 FPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRF  301 (642)
Q Consensus       222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~  301 (642)
                      ...         --..+...........|||||+.|+..+.    -...|.+|.+.+..               .++.  
T Consensus        80 Qpe---------w~ckIdeg~agls~~~WSPdgrhiL~tse----F~lriTVWSL~t~~---------------~~~~--  129 (447)
T KOG4497|consen   80 QPE---------WYCKIDEGQAGLSSISWSPDGRHILLTSE----FDLRITVWSLNTQK---------------GYLL--  129 (447)
T ss_pred             cce---------eEEEeccCCCcceeeeECCCcceEeeeec----ceeEEEEEEeccce---------------eEEe--
Confidence            211         12344444446777889999998887542    23355666552211               1111  


Q ss_pred             ecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCce
Q 039497          302 RGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTAF  376 (642)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~~  376 (642)
                                    .-.+          ......+|+|||++.+....++-+.-+-+   ...+...+..     .....
T Consensus       130 --------------~~pK----------~~~kg~~f~~dg~f~ai~sRrDCkdyv~i---~~c~~W~ll~~f~~dT~Dlt  182 (447)
T KOG4497|consen  130 --------------PHPK----------TNVKGYAFHPDGQFCAILSRRDCKDYVQI---SSCKAWILLKEFKLDTIDLT  182 (447)
T ss_pred             --------------cccc----------cCceeEEECCCCceeeeeecccHHHHHHH---HhhHHHHHHHhcCCCccccc
Confidence                          0000          11124488999998888766432221111   1111111111     22355


Q ss_pred             eeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC
Q 039497          377 YNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR  456 (642)
Q Consensus       377 ~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~  456 (642)
                      .+.|||||..|++..+.       -...++...-         +               -.+....|||.++.|+..+.+
T Consensus       183 gieWsPdg~~laVwd~~-------Leykv~aYe~---------~---------------lG~k~v~wsP~~qflavGsyD  231 (447)
T KOG4497|consen  183 GIEWSPDGNWLAVWDNV-------LEYKVYAYER---------G---------------LGLKFVEWSPCNQFLAVGSYD  231 (447)
T ss_pred             CceECCCCcEEEEecch-------hhheeeeeee---------c---------------cceeEEEeccccceEEeeccc
Confidence            78899999999887642       1222222211         0               011223444444444433321


Q ss_pred             ------------------------CCc-------------------------e--eEE-----EEECCC-Cccc---cce
Q 039497          457 ------------------------SGH-------------------------K--NLF-----VLDAVN-GEFN---GDI  476 (642)
Q Consensus       457 ------------------------~g~-------------------------~--~l~-----~~d~~~-g~~~---~~~  476 (642)
                                              +-.                         .  .++     ++.... -...   +++
T Consensus       232 ~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~  311 (447)
T KOG4497|consen  232 QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPP  311 (447)
T ss_pred             hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCC
Confidence                                    100                         0  000     000000 0000   001


Q ss_pred             eeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEE
Q 039497          477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL  556 (642)
Q Consensus       477 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l  556 (642)
                      +...+....+..++||+|..+++...+.      .++.||+||+...+...+....+         ++....|.|.-.+|
T Consensus       312 tD~pnPk~g~g~lafs~Ds~y~aTrnd~------~PnalW~Wdlq~l~l~avLiQk~---------piraf~WdP~~prL  376 (447)
T KOG4497|consen  312 TDFPNPKCGAGKLAFSCDSTYAATRNDK------YPNALWLWDLQNLKLHAVLIQKH---------PIRAFEWDPGRPRL  376 (447)
T ss_pred             CCCCCcccccceeeecCCceEEeeecCC------CCceEEEEechhhhhhhhhhhcc---------ceeEEEeCCCCceE
Confidence            1111222344567999999877665543      56789999998766544432221         45778999999999


Q ss_pred             EEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497          557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      ++.....                 +||.|.+.+.....+...+..+.++.|.-+|..++-.
T Consensus       377 ~vctg~s-----------------rLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~  420 (447)
T KOG4497|consen  377 VVCTGKS-----------------RLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLC  420 (447)
T ss_pred             EEEcCCc-----------------eEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEE
Confidence            8876542                 8999999997777777777788899999999876544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=3.3e-13  Score=124.20  Aligned_cols=279  Identities=15%  Similarity=0.105  Sum_probs=172.0

Q ss_pred             eeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee------------cCCCCcccCCeecCCCCEEEEEEeecC
Q 039497          237 RVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT------------LNPNFHHYNPFVSANSEFIGYHRFRGE  304 (642)
Q Consensus       237 ~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~------------~~~~~~~~~~~~spDg~~l~~~~~~~~  304 (642)
                      .|..++..+..++||.|||+|+.+..++     .|++|++.            .-.........|+||-+.+++...++.
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr-----~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDR-----SIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCc-----eEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence            3455666788899999999999987665     89999992            112234556789999998888766544


Q ss_pred             CCCCCcccce-Eeec-cCCCceeEEeeeC-----------CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee
Q 039497          305 STEGQSTIPH-LEPV-ASPVKELRMLRLN-----------GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK  371 (642)
Q Consensus       305 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~-----------~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~  371 (642)
                      .     ...+ +... ++. -.+......           ...+.....+++|+..+.   ...|.+|++.|.....+..
T Consensus       156 ~-----l~vyk~~K~~dG~-~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~---dt~i~lw~lkGq~L~~idt  226 (420)
T KOG2096|consen  156 K-----LCVYKLVKKTDGS-GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL---DTKICLWDLKGQLLQSIDT  226 (420)
T ss_pred             E-----EEEEEeeecccCC-CCcccccccccccchhcccceEEEeecCCceEEEEecC---CCcEEEEecCCceeeeecc
Confidence            2     1111 1111 111 111111111           012233445555555443   4678888998655444443


Q ss_pred             -cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeE
Q 039497          372 -DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL  450 (642)
Q Consensus       372 -~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l  450 (642)
                       .......+.||||++|+.+..       ...+.+|.+-..++|+.     +.......|..+. ..+..++|||+.+++
T Consensus       227 nq~~n~~aavSP~GRFia~~gF-------TpDVkVwE~~f~kdG~f-----qev~rvf~LkGH~-saV~~~aFsn~S~r~  293 (420)
T KOG2096|consen  227 NQSSNYDAAVSPDGRFIAVSGF-------TPDVKVWEPIFTKDGTF-----QEVKRVFSLKGHQ-SAVLAAAFSNSSTRA  293 (420)
T ss_pred             ccccccceeeCCCCcEEEEecC-------CCCceEEEEEeccCcch-----hhhhhhheeccch-hheeeeeeCCCccee
Confidence             334567899999999998875       56788898877444221     1111334445554 567778999999998


Q ss_pred             EEEeCCCCceeEEEEECC--CCccccceeeCCC-------CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          451 VFRSGRSGHKNLFVLDAV--NGEFNGDIRQLTD-------GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       451 ~~~~~~~g~~~l~~~d~~--~g~~~~~~~~l~~-------~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      +..+ ++|.+.||-.|+.  .++-   ++.|..       .....-.+..||.|+.|+......         |.++...
T Consensus       294 vtvS-kDG~wriwdtdVrY~~~qD---pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~---------l~~~~se  360 (420)
T KOG2096|consen  294 VTVS-KDGKWRIWDTDVRYEAGQD---PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSD---------LKVFASE  360 (420)
T ss_pred             EEEe-cCCcEEEeeccceEecCCC---chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCc---------eEEEEcc
Confidence            8766 5688888766653  2222   122221       122333568999999998887665         7777766


Q ss_pred             CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       522 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      .++...-...-+..       .+..++|++||++++....+
T Consensus       361 ~g~~~~~~e~~h~~-------~Is~is~~~~g~~~atcGdr  394 (420)
T KOG2096|consen  361 DGKDYPELEDIHST-------TISSISYSSDGKYIATCGDR  394 (420)
T ss_pred             cCccchhHHHhhcC-------ceeeEEecCCCcEEeeecce
Confidence            65543322222333       46789999999999877654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.59  E-value=6.5e-12  Score=127.51  Aligned_cols=194  Identities=11%  Similarity=0.073  Sum_probs=111.3

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCC-CCe-eEEe--e-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKR-WTLI--K-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~-~~l~--~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      ++.++|+|++|+.....  ...|.+++++. +.. ..+.  . ......+.++|||+++++...      ..+.+.+|++
T Consensus        84 ~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~  155 (330)
T PRK11028         84 HISTDHQGRFLFSASYN--ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTL  155 (330)
T ss_pred             EEEECCCCCEEEEEEcC--CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEE
Confidence            56889999988776543  45666676653 211 1111  1 234567789999999988774      4778899988


Q ss_pred             EeecCCCCCCCCCcccc--ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--CCccccceeeCCCCC-
Q 039497          409 SFQLDPSDDNNREEIPC--DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NGEFNGDIRQLTDGP-  483 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~~~~~~~l~~~~-  483 (642)
                      +.  +      +.-...  ....+..+  ....+++|+|||++++......+  .|.+|+++  +++. .....+...+ 
T Consensus       156 ~~--~------g~l~~~~~~~~~~~~g--~~p~~~~~~pdg~~lyv~~~~~~--~v~v~~~~~~~~~~-~~~~~~~~~p~  222 (330)
T PRK11028        156 SD--D------GHLVAQEPAEVTTVEG--AGPRHMVFHPNQQYAYCVNELNS--SVDVWQLKDPHGEI-ECVQTLDMMPA  222 (330)
T ss_pred             CC--C------CcccccCCCceecCCC--CCCceEEECCCCCEEEEEecCCC--EEEEEEEeCCCCCE-EEEEEEecCCC
Confidence            65  2      210000  01111122  24567899999999988765444  66666665  3442 0012221111 


Q ss_pred             -----CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC--CCceEEeeecCCCCCCCcccccccceEEcCCCCEE
Q 039497          484 -----WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD--GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL  556 (642)
Q Consensus       484 -----~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l  556 (642)
                           .....+.++|||++||......       ..|.+++++  ++..+.+.......       .+..+.|+|||++|
T Consensus       223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~-------~~I~v~~i~~~~~~~~~~~~~~~~~-------~p~~~~~~~dg~~l  288 (330)
T PRK11028        223 DFSDTRWAADIHITPDGRHLYACDRTA-------SLISVFSVSEDGSVLSFEGHQPTET-------QPRGFNIDHSGKYL  288 (330)
T ss_pred             cCCCCccceeEEECCCCCEEEEecCCC-------CeEEEEEEeCCCCeEEEeEEEeccc-------cCCceEECCCCCEE
Confidence                 1122467999999888764322       236666664  33333222211111       34678999999999


Q ss_pred             EEEEec
Q 039497          557 LFTANL  562 (642)
Q Consensus       557 ~~~~~~  562 (642)
                      +.+...
T Consensus       289 ~va~~~  294 (330)
T PRK11028        289 IAAGQK  294 (330)
T ss_pred             EEEEcc
Confidence            887643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.59  E-value=9.1e-14  Score=132.02  Aligned_cols=277  Identities=15%  Similarity=0.165  Sum_probs=174.1

Q ss_pred             CceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee----cCC--CcceEeeCCe
Q 039497          130 SKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC----ERG--GWPTWSGDST  203 (642)
Q Consensus       130 ~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~----~~~--~~~~wspdg~  203 (642)
                      .+..-|..+........||++|||||.++.+.          ..-||.+.....  .++..    ...  ....||||.+
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~----------Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdr  282 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDS----------TAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDR  282 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCc----------eEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCC
Confidence            34445566666667899999999999887655          333444333332  22222    112  2469999997


Q ss_pred             EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC--CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCC
Q 039497          204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP--GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN  281 (642)
Q Consensus       204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~  281 (642)
                      .+++- +.+.  .++++|..+|        .....-+.  +..+.+.+|-|||.+++.     |+....+..||+     
T Consensus       283 yLlaC-g~~e--~~~lwDv~tg--------d~~~~y~~~~~~S~~sc~W~pDg~~~V~-----Gs~dr~i~~wdl-----  341 (519)
T KOG0293|consen  283 YLLAC-GFDE--VLSLWDVDTG--------DLRHLYPSGLGFSVSSCAWCPDGFRFVT-----GSPDRTIIMWDL-----  341 (519)
T ss_pred             eEEec-CchH--heeeccCCcc--------hhhhhcccCcCCCcceeEEccCCceeEe-----cCCCCcEEEecC-----
Confidence            55554 2233  4888888888        33333322  567888899999999888     444557776665     


Q ss_pred             CcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEEC
Q 039497          282 FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKS  361 (642)
Q Consensus       282 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~  361 (642)
                                ||..+.-               |...   ..+.  +     ..+++++||++++.+..   ...|.+++.
T Consensus       342 ----------Dgn~~~~---------------W~gv---r~~~--v-----~dlait~Dgk~vl~v~~---d~~i~l~~~  383 (519)
T KOG0293|consen  342 ----------DGNILGN---------------WEGV---RDPK--V-----HDLAITYDGKYVLLVTV---DKKIRLYNR  383 (519)
T ss_pred             ----------Ccchhhc---------------cccc---ccce--e-----EEEEEcCCCcEEEEEec---ccceeeech
Confidence                      3321100               1000   0001  1     24578999999888653   478889998


Q ss_pred             CCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCcc-
Q 039497          362 DGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA-  439 (642)
Q Consensus       362 ~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  439 (642)
                      +....+.+.. ...+.++..|.||+.+++--       ....+++|++..  .      .     .+++...+. .... 
T Consensus       384 e~~~dr~lise~~~its~~iS~d~k~~LvnL-------~~qei~LWDl~e--~------~-----lv~kY~Ghk-q~~fi  442 (519)
T KOG0293|consen  384 EARVDRGLISEEQPITSFSISKDGKLALVNL-------QDQEIHLWDLEE--N------K-----LVRKYFGHK-QGHFI  442 (519)
T ss_pred             hhhhhhccccccCceeEEEEcCCCcEEEEEc-------ccCeeEEeecch--h------h-----HHHHhhccc-ccceE
Confidence            8877664544 77889999999998666543       378999999964  1      1     333333332 1111 


Q ss_pred             -CcEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497          440 -FPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR  504 (642)
Q Consensus       440 -~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~  504 (642)
                       .-.|-- |.++|+-.+   .+.+||+|+..+|+.   +..|+.+...++.++|+|.....+..+.+
T Consensus       443 IrSCFgg~~~~fiaSGS---ED~kvyIWhr~sgkl---l~~LsGHs~~vNcVswNP~~p~m~ASasD  503 (519)
T KOG0293|consen  443 IRSCFGGGNDKFIASGS---EDSKVYIWHRISGKL---LAVLSGHSKTVNCVSWNPADPEMFASASD  503 (519)
T ss_pred             EEeccCCCCcceEEecC---CCceEEEEEccCCce---eEeecCCcceeeEEecCCCCHHHhhccCC
Confidence             112221 334444333   345899999999998   88899998899999999977665444443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.58  E-value=1.8e-11  Score=115.89  Aligned_cols=284  Identities=15%  Similarity=0.152  Sum_probs=179.7

Q ss_pred             ceEEEEccCCceE--ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-----
Q 039497          121 ALYSTDLKASKFT--RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-----  193 (642)
Q Consensus       121 ~l~~~~~~~~~~~--~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-----  193 (642)
                      ..|.++.++|+..  ++..........+|+|++++|..+....       ..++...|.+|..+|....+.....     
T Consensus        19 ~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~-------~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p   91 (346)
T COG2706          19 YVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG-------EEGGVAAYRIDPDDGRLTFLNRQTLPGSPP   91 (346)
T ss_pred             EEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC-------CcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence            3444444455443  3334455567789999999998765542       1245556666666687776665322     


Q ss_pred             CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCC----------ccccceeecCCcEEEEEEec
Q 039497          194 GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGV----------HCFTPAAFHDGKRLAVATRR  263 (642)
Q Consensus       194 ~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~SpdG~~l~~~~~~  263 (642)
                      ..++.+++|+++|+++-..|...++.+..++...      ...++..+..          .+....++|||++|+.+.--
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~------~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG  165 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ------PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG  165 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccc------cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence            2348889999999987777877888776664311      1212211111          14456689999988885432


Q ss_pred             cCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe-eeCCCccEEcCCCC
Q 039497          264 KNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML-RLNGSFPSFSPDGG  342 (642)
Q Consensus       264 ~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~  342 (642)
                          ...+.+|++..              |+.-..             .           +.... ....+++.|+|+|+
T Consensus       166 ----~Dri~~y~~~d--------------g~L~~~-------------~-----------~~~v~~G~GPRHi~FHpn~k  203 (346)
T COG2706         166 ----TDRIFLYDLDD--------------GKLTPA-------------D-----------PAEVKPGAGPRHIVFHPNGK  203 (346)
T ss_pred             ----CceEEEEEccc--------------Cccccc-------------c-----------ccccCCCCCcceEEEcCCCc
Confidence                23677777631              110000             0           00011 12235779999999


Q ss_pred             EEEEEecCCCceeEEEEECCCCCeeEEee----------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK----------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      .++.+.+-++...+|.++...++...+..          ......+..+|||++|+.+.++      ...+.++.++.  
T Consensus       204 ~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg------~dsI~~f~V~~--  275 (346)
T COG2706         204 YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG------HDSIAVFSVDP--  275 (346)
T ss_pred             EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC------CCeEEEEEEcC--
Confidence            76667666667777888877676655543          2345678999999999887753      56777888876  


Q ss_pred             CCCCCCCCCccccceEEc--cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497          413 DPSDDNNREEIPCDVKIL--TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD  481 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~  481 (642)
                      +     ++     +...+  ...+......+.++|+|++|+.+..++..-.+|..|.++|+.    ..+..
T Consensus       276 ~-----~g-----~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L----~~~~~  332 (346)
T COG2706         276 D-----GG-----KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL----TLLGR  332 (346)
T ss_pred             C-----CC-----EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE----Eeccc
Confidence            3     33     22222  222213477899999999999998888888999999999984    66554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.58  E-value=4.4e-14  Score=134.11  Aligned_cols=268  Identities=16%  Similarity=0.116  Sum_probs=171.7

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe-----------ecCCCCcccCCeecCCCCEEEEEEeecC
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL-----------TLNPNFHHYNPFVSANSEFIGYHRFRGE  304 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~-----------~~~~~~~~~~~~~spDg~~l~~~~~~~~  304 (642)
                      ..+..+..++....||++|++||.++.+.     +.-+|++           ..++...+....||||.++|+.+..+..
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsaSkD~-----Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~  292 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASASKDS-----TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV  292 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeeccCCc-----eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence            34455666788899999999999965443     3444444           3455566677899999999988754433


Q ss_pred             CCCCCcccceEeeccCCCceeEEe---eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE--eecCCceeee
Q 039497          305 STEGQSTIPHLEPVASPVKELRML---RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL--IKDRTAFYNS  379 (642)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~~~~~~  379 (642)
                            .  ++.++..........   .+.....+|.|||.+++..+.   ..++..+++++.....-  .....+.+++
T Consensus       293 ------~--~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~---dr~i~~wdlDgn~~~~W~gvr~~~v~dla  361 (519)
T KOG0293|consen  293 ------L--SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP---DRTIIMWDLDGNILGNWEGVRDPKVHDLA  361 (519)
T ss_pred             ------e--eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC---CCcEEEecCCcchhhcccccccceeEEEE
Confidence                  2  333332221111111   122345689999999777543   47899999998763211  1145688999


Q ss_pred             eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCc
Q 039497          380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH  459 (642)
Q Consensus       380 ~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~  459 (642)
                      .++||++++.+..       +..+.++....  .            ..+.+.... ..+..+..|.||++++..-   ..
T Consensus       362 it~Dgk~vl~v~~-------d~~i~l~~~e~--~------------~dr~lise~-~~its~~iS~d~k~~LvnL---~~  416 (519)
T KOG0293|consen  362 ITYDGKYVLLVTV-------DKKIRLYNREA--R------------VDRGLISEE-QPITSFSISKDGKLALVNL---QD  416 (519)
T ss_pred             EcCCCcEEEEEec-------ccceeeechhh--h------------hhhcccccc-CceeEEEEcCCCcEEEEEc---cc
Confidence            9999999998873       67888888765  1            222233333 5778899999999877654   33


Q ss_pred             eeEEEEECCCCccccceeeCCCCCC---cccceeEe-cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCC
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTDGPW---IDTMPSWS-PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG  535 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~~~~---~~~~~~~s-pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~  535 (642)
                      .+|++||++..+.   +++...+..   .+.+ .|- -|.++|+-.+.+.        .||+|+..++++-.... ++..
T Consensus       417 qei~LWDl~e~~l---v~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSED~--------kvyIWhr~sgkll~~Ls-GHs~  483 (519)
T KOG0293|consen  417 QEIHLWDLEENKL---VRKYFGHKQGHFIIRS-CFGGGNDKFIASGSEDS--------KVYIWHRISGKLLAVLS-GHSK  483 (519)
T ss_pred             CeeEEeecchhhH---HHHhhcccccceEEEe-ccCCCCcceEEecCCCc--------eEEEEEccCCceeEeec-CCcc
Confidence            4899999985443   233222221   1111 232 2334454444443        49999999888765554 5555


Q ss_pred             CCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          536 SGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       536 ~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                             .+..++|+|-...++..+.+.+
T Consensus       484 -------~vNcVswNP~~p~m~ASasDDg  505 (519)
T KOG0293|consen  484 -------TVNCVSWNPADPEMFASASDDG  505 (519)
T ss_pred             -------eeeEEecCCCCHHHhhccCCCC
Confidence                   5778999998888777766654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.57  E-value=1.2e-12  Score=118.60  Aligned_cols=272  Identities=17%  Similarity=0.151  Sum_probs=168.6

Q ss_pred             ccccceeecCCcEEEEEEeccCCceeeEEEEEe-------------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCc
Q 039497          244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL-------------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQS  310 (642)
Q Consensus       244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~-------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  310 (642)
                      .+...+..+.+..+++...+    ...+.+|++             ..++.-.+.....|+||...+....++.      
T Consensus        17 ~Vt~la~~~~~~~~l~sasr----Dk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~------   86 (315)
T KOG0279|consen   17 WVTALAIKIKNSDILVSASR----DKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT------   86 (315)
T ss_pred             eEEEEEeecCCCceEEEccc----ceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce------
Confidence            44444444444444443322    225556666             2344555678899999998777655544      


Q ss_pred             ccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCC
Q 039497          311 TIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEK  385 (642)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~  385 (642)
                      ..+  .++.......++...  .....++|+|.++|+..+.   ...|-+++..+.-...+..   ..-+..+.|+|+..
T Consensus        87 lrl--WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr---DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   87 LRL--WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR---DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             EEE--EEecCCcEEEEEEecCCceEEEEecCCCceeecCCC---cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence            233  333333222222211  2245789999999988544   4678888988876666654   34588999999964


Q ss_pred             EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497          386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL  465 (642)
Q Consensus       386 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~  465 (642)
                      ..++++.     ..+..+++|++..          .+   ....+..+. +.+..+++||||...+... +  ..++++|
T Consensus       162 ~p~Ivs~-----s~DktvKvWnl~~----------~~---l~~~~~gh~-~~v~t~~vSpDGslcasGg-k--dg~~~Lw  219 (315)
T KOG0279|consen  162 NPIIVSA-----SWDKTVKVWNLRN----------CQ---LRTTFIGHS-GYVNTVTVSPDGSLCASGG-K--DGEAMLW  219 (315)
T ss_pred             CcEEEEc-----cCCceEEEEccCC----------cc---hhhcccccc-ccEEEEEECCCCCEEecCC-C--CceEEEE
Confidence            4444443     3588999999965          11   223333444 7788899999998877633 3  3489999


Q ss_pred             ECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccc
Q 039497          466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERI  544 (642)
Q Consensus       466 d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~  544 (642)
                      |+..++.   +..+.. ...+..++|+|+--+|..+....         |.+||++++... .+................
T Consensus       220 dL~~~k~---lysl~a-~~~v~sl~fspnrywL~~at~~s---------IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c  286 (315)
T KOG0279|consen  220 DLNEGKN---LYSLEA-FDIVNSLCFSPNRYWLCAATATS---------IKIWDLESKAVVEELKLDGIGPSSKAGDPIC  286 (315)
T ss_pred             EccCCce---eEeccC-CCeEeeEEecCCceeEeeccCCc---------eEEEeccchhhhhhccccccccccccCCcEE
Confidence            9998875   555544 35678899999865555444332         999999887542 222111100000111245


Q ss_pred             cceEEcCCCCEEEEEEecCCc
Q 039497          545 NHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       545 ~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                      ..++||+||..|+....++..
T Consensus       287 lslaws~dG~tLf~g~td~~i  307 (315)
T KOG0279|consen  287 LSLAWSADGQTLFAGYTDNVI  307 (315)
T ss_pred             EEEEEcCCCcEEEeeecCCcE
Confidence            678999999999988877643

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=5.3e-12  Score=124.63  Aligned_cols=335  Identities=12%  Similarity=0.103  Sum_probs=200.6

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC----ceeEeecCCCcceEeeCCeEEEEEecC------
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN----KRVIVCERGGWPTWSGDSTIYFHRQAD------  211 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~l~~~~~~~~~wspdg~~~~~~~~~------  211 (642)
                      +...+|||-|.||+..-..+             |-+|   +|+    .++..++......|||..+.|++-+..      
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-------------I~lW---GG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~  276 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-------------IALW---GGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEE  276 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-------------eeee---cCccHHHHHhccCCCceeeecCCccceEEEecCCccccCc
Confidence            46689999999999553322             2233   443    233334444567899998777664211      


Q ss_pred             --CCceEEEEEecCCCcccccCCccceeeCCC-CCccc--cceeecCCcEEEEEEeccC--CceeeEEEEEeecCCCCcc
Q 039497          212 --DGWWSIFRVSFPENLEFLGFPIAPTRVTPP-GVHCF--TPAAFHDGKRLAVATRRKN--RNFRHIEIYDLTLNPNFHH  284 (642)
Q Consensus       212 --~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~SpdG~~l~~~~~~~~--~~~~~i~~~d~~~~~~~~~  284 (642)
                        +...+|..||+.+|.       ....+... +....  .+.||.|+|++|-...+.-  -....+.++|...-....+
T Consensus       277 ~d~e~~~l~IWDI~tG~-------lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gI  349 (698)
T KOG2314|consen  277 DDNEGQQLIIWDIATGL-------LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGI  349 (698)
T ss_pred             ccCCCceEEEEEccccc-------hhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccc
Confidence              123589999999983       22222221 21222  2457999999886544210  0011234444455667788


Q ss_pred             cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC--CceeEEeeeCCCccEEcCCCCEEEEEecCCCc-------ee
Q 039497          285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP--VKELRMLRLNGSFPSFSPDGGLIVFNHDFELN-------AG  355 (642)
Q Consensus       285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-------~~  355 (642)
                      .++.|||-+..|||.......   ......+..+...  .+...+.......+.|-..|++|++-.++..+       .+
T Consensus       350 r~FswsP~~~llAYwtpe~~~---~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n  426 (698)
T KOG2314|consen  350 RDFSWSPTSNLLAYWTPETNN---IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN  426 (698)
T ss_pred             cCcccCCCcceEEEEcccccC---CcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence            999999999999997644331   1222233333222  22223334455678899999999995543221       22


Q ss_pred             EEEEECCCCCe--eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc
Q 039497          356 IKIAKSDGSKR--WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE  433 (642)
Q Consensus       356 l~~~d~~~~~~--~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  433 (642)
                      +-++.+.....  ..+.....+..++|-|.|+++++.+..    ....++.+|.+..  +     ..     +.+.+..-
T Consensus       427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~----~~k~tvsfY~~e~--~-----~~-----~~~lVk~~  490 (698)
T KOG2314|consen  427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN----TVKNTVSFYAVET--N-----IK-----KPSLVKEL  490 (698)
T ss_pred             EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc----ccccceeEEEeec--C-----CC-----chhhhhhh
Confidence            33333333332  222226778899999999999988754    4577889999985  2     22     34433333


Q ss_pred             CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497          434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA  512 (642)
Q Consensus       434 ~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~  512 (642)
                      .......+.|||.|++++.+........|+.+|++-...    +.... .........|.|.|+++...+......  -.
T Consensus       491 dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~----k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk--~d  564 (698)
T KOG2314|consen  491 DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL----KDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK--VD  564 (698)
T ss_pred             cccccceEEEcCCCcEEEEEEecccccceEEEecchhhh----hhccCccccccccceECCCCCEEEEeeehhhhc--cc
Confidence            324566799999999999988765566888888873231    22221 112446789999999998877654211  22


Q ss_pred             eeEEEEeCCCCc
Q 039497          513 FSLYVIKPDGSG  524 (642)
Q Consensus       513 ~~l~~~d~~~~~  524 (642)
                      ..-.++++.|..
T Consensus       565 ~GYri~tfqGrl  576 (698)
T KOG2314|consen  565 NGYRIFTFQGRL  576 (698)
T ss_pred             cceEEEEeecHH
Confidence            334556665543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.56  E-value=6e-12  Score=118.21  Aligned_cols=278  Identities=15%  Similarity=0.122  Sum_probs=174.3

Q ss_pred             ceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC-C--CcceEeeCCeEEEE
Q 039497          131 KFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER-G--GWPTWSGDSTIYFH  207 (642)
Q Consensus       131 ~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~--~~~~wspdg~~~~~  207 (642)
                      .+-.|+.+........||.||.+||.....+            .|.++...+|..+...... .  .|..|.|-+.+++.
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG------------~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illA  165 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSG------------KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLA  165 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCc------------cEEEEEcccCceEEEeecccCceEEEEecccccEEEe
Confidence            4567788888888899999999999876555            7999999998877666532 2  48899998888888


Q ss_pred             EecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCC
Q 039497          208 RQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNP  287 (642)
Q Consensus       208 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  287 (642)
                      . ..+|  .+|.+.+..+.       ..+.+.++...+....|.||||+|+....++     .|.+|++.++...     
T Consensus       166 G-~~DG--svWmw~ip~~~-------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg-----ti~~Wn~ktg~p~-----  225 (399)
T KOG0296|consen  166 G-STDG--SVWMWQIPSQA-------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDG-----TIIVWNPKTGQPL-----  225 (399)
T ss_pred             e-cCCC--cEEEEECCCcc-------eeeEecCCCCCcccccccCCCceEEEEecCc-----eEEEEecCCCcee-----
Confidence            8 5678  77888777642       4556677777888889999999998865544     8899988554311     


Q ss_pred             eecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCee
Q 039497          288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW  367 (642)
Q Consensus       288 ~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~  367 (642)
                               .-.                   +... .+...     ...++.++.. ++..  +.....+..+..+++..
T Consensus       226 ---------~~~-------------------~~~e-~~~~~-----~~~~~~~~~~-~~~g--~~e~~~~~~~~~sgKVv  268 (399)
T KOG0296|consen  226 ---------HKI-------------------TQAE-GLELP-----CISLNLAGST-LTKG--NSEGVACGVNNGSGKVV  268 (399)
T ss_pred             ---------EEe-------------------cccc-cCcCC-----ccccccccce-eEec--cCCccEEEEccccceEE
Confidence                     000                   0000 00000     0111222211 1111  00111222222222111


Q ss_pred             --------EEee--cCCceeeeeec---CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497          368 --------TLIK--DRTAFYNSWSP---TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE  434 (642)
Q Consensus       368 --------~l~~--~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  434 (642)
                              .+..  .....++.++|   +=...+..       .-++++.||++..  .            +.+.+-.++
T Consensus       269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G-------~vdG~i~iyD~a~--~------------~~R~~c~he  327 (399)
T KOG0296|consen  269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG-------SVDGTIAIYDLAA--S------------TLRHICEHE  327 (399)
T ss_pred             EecCCCCccccccchhhhhhhhhcccccccchhhcc-------cccceEEEEeccc--c------------hhheeccCC
Confidence                    1111  22233444444   33322332       2478999999866  2            556666665


Q ss_pred             CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCC
Q 039497          435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN  506 (642)
Q Consensus       435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~  506 (642)
                       ..+..+.|-+ -.+|+... -+  ..|+.||..+|+.   ....+.+...+..++++|++++++..+.++.
T Consensus       328 -~~V~~l~w~~-t~~l~t~c-~~--g~v~~wDaRtG~l---~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  328 -DGVTKLKWLN-TDYLLTAC-AN--GKVRQWDARTGQL---KFTYTGHQMGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             -CceEEEEEcC-cchheeec-cC--ceEEeeeccccce---EEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence             5677889987 45555444 33  3899999999997   5667777778888999999999888887754

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.56  E-value=8.6e-13  Score=127.66  Aligned_cols=264  Identities=17%  Similarity=0.172  Sum_probs=170.6

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY  274 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~  274 (642)
                      .++|+.||.++++. ..+|...||  +..+.        ....+-.+...++.+.|+.+|.+|+....++     .+-+|
T Consensus       240 ~L~Wn~~G~~LatG-~~~G~~riw--~~~G~--------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~-----ttilw  303 (524)
T KOG0273|consen  240 SLDWNNDGTLLATG-SEDGEARIW--NKDGN--------LISTLGQHKGPIFSLKWNKKGTYILSGGVDG-----TTILW  303 (524)
T ss_pred             eEEecCCCCeEEEe-ecCcEEEEE--ecCch--------hhhhhhccCCceEEEEEcCCCCEEEeccCCc-----cEEEE
Confidence            46999999999988 567855555  55565        5566777777899999999999999855444     88899


Q ss_pred             EeecCC--------CCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc--CCCceeEEeeeCCCccEEcCCCCEE
Q 039497          275 DLTLNP--------NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA--SPVKELRMLRLNGSFPSFSPDGGLI  344 (642)
Q Consensus       275 d~~~~~--------~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l  344 (642)
                      |...+.        .....+..|-.+.+. +..  ..+      ..+.+..+.  .+..+..-.......+.|.|.|..|
T Consensus       304 d~~~g~~~q~f~~~s~~~lDVdW~~~~~F-~ts--~td------~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LL  374 (524)
T KOG0273|consen  304 DAHTGTVKQQFEFHSAPALDVDWQSNDEF-ATS--STD------GCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLL  374 (524)
T ss_pred             eccCceEEEeeeeccCCccceEEecCceE-eec--CCC------ceEEEEEecCCCcceeeecccCceEEEEECCCCceE
Confidence            983221        111122334333221 111  111      011222222  2322222212223567899999988


Q ss_pred             EEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCC---------EEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497          345 VFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEK---------HVIYTSTGPIFQSERATVQIARVSFQLDPS  415 (642)
Q Consensus       345 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~---------~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  415 (642)
                      +..++ ++.-.||-+.-.+.....-.+...+..+.|||+|.         .|+.++.       +..+.+|++..     
T Consensus       375 aS~Sd-D~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~-------dstV~lwdv~~-----  441 (524)
T KOG0273|consen  375 ASCSD-DGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF-------DSTVKLWDVES-----  441 (524)
T ss_pred             EEecC-CCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec-------CCeEEEEEccC-----
Confidence            77765 55555554433322211112256678888888765         3444442       78999999976     


Q ss_pred             CCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC
Q 039497          416 DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG  495 (642)
Q Consensus       416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG  495 (642)
                         +-     ....+..+. ..++.++|||||+++++.+..   ..|.+|+.++++.    .+-..+...+..+.|+.+|
T Consensus       442 ---gv-----~i~~f~kH~-~pVysvafS~~g~ylAsGs~d---g~V~iws~~~~~l----~~s~~~~~~Ifel~Wn~~G  505 (524)
T KOG0273|consen  442 ---GV-----PIHTLMKHQ-EPVYSVAFSPNGRYLASGSLD---GCVHIWSTKTGKL----VKSYQGTGGIFELCWNAAG  505 (524)
T ss_pred             ---Cc-----eeEeeccCC-CceEEEEecCCCcEEEecCCC---CeeEeccccchhe----eEeecCCCeEEEEEEcCCC
Confidence               33     566677777 789999999999999987643   3799999999985    5544455667889999999


Q ss_pred             CEEEEEecCCCCCCCCceeEEEEeC
Q 039497          496 DLIAFSSNRHNPDNVEAFSLYVIKP  520 (642)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~l~~~d~  520 (642)
                      ++|.....++.        ++++|+
T Consensus       506 ~kl~~~~sd~~--------vcvldl  522 (524)
T KOG0273|consen  506 DKLGACASDGS--------VCVLDL  522 (524)
T ss_pred             CEEEEEecCCC--------ceEEEe
Confidence            99888877664        777776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.55  E-value=1.8e-11  Score=124.34  Aligned_cols=220  Identities=16%  Similarity=0.255  Sum_probs=131.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCC-CCeeEE---ee------------cCCceeeeeecCCCEEEEEEcCCCcc
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKRWTL---IK------------DRTAFYNSWSPTEKHVIYTSTGPIFQ  397 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~~~l---~~------------~~~~~~~~~spdg~~l~~~~~~~~~~  397 (642)
                      ++.++|||++|+......+.  |.+++++. +.....   ..            ....+.+.++|||++|+....     
T Consensus        91 ~i~~~~~g~~l~vany~~g~--v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----  163 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGS--VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----  163 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTE--EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----
T ss_pred             EEEEecCCCEEEEEEccCCe--EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----
Confidence            55789999988887765444  55555543 332222   11            234668899999999988875     


Q ss_pred             cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee
Q 039497          398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR  477 (642)
Q Consensus       398 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~  477 (642)
                       +...+.+|+++.  .      ..++. ....+.........++.|+|||++++......+.-.++.++..+|+. ..+.
T Consensus       164 -G~D~v~~~~~~~--~------~~~l~-~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~-~~~~  232 (345)
T PF10282_consen  164 -GADRVYVYDIDD--D------TGKLT-PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL-TEIQ  232 (345)
T ss_dssp             -TTTEEEEEEE-T--T------S-TEE-EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE-EEEE
T ss_pred             -CCCEEEEEEEeC--C------CceEE-EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce-eEEE
Confidence             367888888866  2      21111 11222222224567899999999999888766655555555446653 1111


Q ss_pred             eCCCC------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcC
Q 039497          478 QLTDG------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA  551 (642)
Q Consensus       478 ~l~~~------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~  551 (642)
                      .+...      ......+.+||||++||++....     +...+|.+|..+++++.+......+      ..+..+.++|
T Consensus       233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-----~sI~vf~~d~~~g~l~~~~~~~~~G------~~Pr~~~~s~  301 (345)
T PF10282_consen  233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-----NSISVFDLDPATGTLTLVQTVPTGG------KFPRHFAFSP  301 (345)
T ss_dssp             EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-----TEEEEEEECTTTTTEEEEEEEEESS------SSEEEEEE-T
T ss_pred             EeeeccccccccCCceeEEEecCCCEEEEEeccC-----CEEEEEEEecCCCceEEEEEEeCCC------CCccEEEEeC
Confidence            12111      11345678999999888877654     3333444444566776654432222      1467899999


Q ss_pred             CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497          552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       552 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                      ||++|+++....+..              .+|.+|.++|.++.+.
T Consensus       302 ~g~~l~Va~~~s~~v--------------~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  302 DGRYLYVANQDSNTV--------------SVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             TSSEEEEEETTTTEE--------------EEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEecCCCeE--------------EEEEEeCCCCcEEEec
Confidence            999998877665432              5666677787776554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.55  E-value=1.8e-13  Score=140.68  Aligned_cols=268  Identities=14%  Similarity=0.111  Sum_probs=179.1

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeCCeEEEEEecCCCceEEEEEe
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVS  221 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspdg~~~~~~~~~~g~~~l~~~~  221 (642)
                      ..++.||+|++.||-.-.            ...|++|.+...+.+++...     .|...-..     ..++ ..+-..|
T Consensus       381 v~ca~fSddssmlA~Gf~------------dS~i~~~Sl~p~kl~~lk~~-----~~l~~~d~-----~sad-~~~~~~D  437 (707)
T KOG0263|consen  381 VTCAEFSDDSSMLACGFV------------DSSVRVWSLTPKKLKKLKDA-----SDLSNIDT-----ESAD-VDVDMLD  437 (707)
T ss_pred             ceeEeecCCcchhhcccc------------ccEEEEEecchhhhccccch-----hhhccccc-----cccc-hhhhhcc
Confidence            466889999998884433            33788888877666666431     11110000     0000 0122223


Q ss_pred             cCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEe
Q 039497          222 FPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRF  301 (642)
Q Consensus       222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~  301 (642)
                      ...+.       ..+.+.++...++...|+||.++|+.++.+.     .+++|.+.+..                     
T Consensus       438 ~~~~~-------~~~~L~GH~GPVyg~sFsPd~rfLlScSED~-----svRLWsl~t~s---------------------  484 (707)
T KOG0263|consen  438 DDSSG-------TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDS-----SVRLWSLDTWS---------------------  484 (707)
T ss_pred             ccCCc-------eeEEeecCCCceeeeeecccccceeeccCCc-----ceeeeecccce---------------------
Confidence            33221       4456888877899999999999999866544     78888873321                     


Q ss_pred             ecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeee
Q 039497          302 RGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNS  379 (642)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~  379 (642)
                                  .++..++...+       .....|+|-|-++|..+. +....||..|-  ....++..  ...+..+.
T Consensus       485 ------------~~V~y~GH~~P-------VwdV~F~P~GyYFatas~-D~tArLWs~d~--~~PlRifaghlsDV~cv~  542 (707)
T KOG0263|consen  485 ------------CLVIYKGHLAP-------VWDVQFAPRGYYFATASH-DQTARLWSTDH--NKPLRIFAGHLSDVDCVS  542 (707)
T ss_pred             ------------eEEEecCCCcc-------eeeEEecCCceEEEecCC-Cceeeeeeccc--CCchhhhcccccccceEE
Confidence                        01111111111       123468888866555533 55667776664  33333322  56678899


Q ss_pred             eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCc
Q 039497          380 WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH  459 (642)
Q Consensus       380 ~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~  459 (642)
                      |.|+..+++..+.       +..+++|++..        |.     ..+.++.+. ..+..++|||+|++|+..+.   .
T Consensus       543 FHPNs~Y~aTGSs-------D~tVRlWDv~~--------G~-----~VRiF~GH~-~~V~al~~Sp~Gr~LaSg~e---d  598 (707)
T KOG0263|consen  543 FHPNSNYVATGSS-------DRTVRLWDVST--------GN-----SVRIFTGHK-GPVTALAFSPCGRYLASGDE---D  598 (707)
T ss_pred             ECCcccccccCCC-------CceEEEEEcCC--------Cc-----EEEEecCCC-CceEEEEEcCCCceEeeccc---C
Confidence            9999999987753       78999999977        44     566666666 88999999999999987663   3


Q ss_pred             eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      ..|.+||+.+|+.   +.++..+.+.+.++.||.||..|+..+.+..        |.+||+..
T Consensus       599 ~~I~iWDl~~~~~---v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns--------V~lWD~~~  650 (707)
T KOG0263|consen  599 GLIKIWDLANGSL---VKQLKGHTGTIYSLSFSRDGNVLASGGADNS--------VRLWDLTK  650 (707)
T ss_pred             CcEEEEEcCCCcc---hhhhhcccCceeEEEEecCCCEEEecCCCCe--------EEEEEchh
Confidence            4799999999887   7777778888899999999999888887654        88888753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.54  E-value=4.4e-12  Score=113.89  Aligned_cols=275  Identities=15%  Similarity=0.169  Sum_probs=173.9

Q ss_pred             eeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccccc--CCCEEEEEEeccCCCc
Q 039497           37 HRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA--RNNKLFFISAHEQPDQ  114 (642)
Q Consensus        37 ~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~  114 (642)
                      +.+-.+.+.....+|. -||.+||- +.-++...+|.++.+... ..+.--.+...-+...+  ...-++++...+.   
T Consensus        14 r~~~~~~~~v~Sv~wn-~~g~~las-gs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d~~atas~dk---   87 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWN-CDGTKLAS-GSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPDLFATASGDK---   87 (313)
T ss_pred             HHhhhhhhcceEEEEc-ccCceeee-cccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCcceEEecCCc---
Confidence            4455677788888999 99999994 444778889988444211 00000000001112223  1222333333331   


Q ss_pred             ccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee--cC
Q 039497          115 IFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC--ER  192 (642)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~--~~  192 (642)
                            .|-+.+...++.+.-+..........|||||+++++...+.            .|-.++...-+...-..  ..
T Consensus        88 ------~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD------------~it~id~r~~~~~~~~~~~~e  149 (313)
T KOG1407|consen   88 ------TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDD------------RITFIDARTYKIVNEEQFKFE  149 (313)
T ss_pred             ------eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc------------cEEEEEecccceeehhcccce
Confidence                  34444778888777666666667789999999999987555            56666665443222111  11


Q ss_pred             CCcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497          193 GGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE  272 (642)
Q Consensus       193 ~~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~  272 (642)
                      .....|..++.++|..+ ..|..+|..+..-.         ....+..+......+.|+|+||++|.     |++..-+-
T Consensus       150 ~ne~~w~~~nd~Fflt~-GlG~v~ILsypsLk---------pv~si~AH~snCicI~f~p~GryfA~-----GsADAlvS  214 (313)
T KOG1407|consen  150 VNEISWNNSNDLFFLTN-GLGCVEILSYPSLK---------PVQSIKAHPSNCICIEFDPDGRYFAT-----GSADALVS  214 (313)
T ss_pred             eeeeeecCCCCEEEEec-CCceEEEEeccccc---------cccccccCCcceEEEEECCCCceEee-----ccccceee
Confidence            23568988878888873 35777888776322         34556666667778899999999999     55666888


Q ss_pred             EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497          273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL  352 (642)
Q Consensus       273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  352 (642)
                      |||+..                 |+..+             .+.+++.+          .+.++||.||++||..++   
T Consensus       215 LWD~~E-----------------LiC~R-------------~isRldwp----------VRTlSFS~dg~~lASaSE---  251 (313)
T KOG1407|consen  215 LWDVDE-----------------LICER-------------CISRLDWP----------VRTLSFSHDGRMLASASE---  251 (313)
T ss_pred             ccChhH-----------------hhhhe-------------eeccccCc----------eEEEEeccCcceeeccCc---
Confidence            888721                 22221             12222333          234589999999988664   


Q ss_pred             ceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcC
Q 039497          353 NAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTG  393 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~  393 (642)
                      ..-|-+.++++|....-.. .+....++|.|....|+|+...
T Consensus       252 Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  252 DHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence            3567778888776544333 7888999999999999999864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.53  E-value=6.9e-12  Score=127.40  Aligned_cols=295  Identities=19%  Similarity=0.225  Sum_probs=163.5

Q ss_pred             eeEEEEEe--cCCCceeEee-cCC---CcceEeeCCeEEEEEec---CCCceEEEEEecCCCcccccCCccceee---CC
Q 039497          173 TDIVVFQE--SDPNKRVIVC-ERG---GWPTWSGDSTIYFHRQA---DDGWWSIFRVSFPENLEFLGFPIAPTRV---TP  240 (642)
Q Consensus       173 ~~l~~~~~--~~g~~~~l~~-~~~---~~~~wspdg~~~~~~~~---~~g~~~l~~~~~~~~~~~~~~~~~~~~l---~~  240 (642)
                      ..|+++.+  ++++...+.. ...   .+++++|+++++|+...   ..|....|.++.+++        ..+.+   ..
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g--------~L~~~~~~~~   84 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG--------TLTLLNSVPS   84 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT--------EEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc--------eeEEeeeecc
Confidence            35666555  6666554443 122   46788999987777644   456677788877744        33332   22


Q ss_pred             CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc-
Q 039497          241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA-  319 (642)
Q Consensus       241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~-  319 (642)
                      .+....+++++|||++|+++.-..+    .+.++++.             .+|+......              ..... 
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g----~v~v~~l~-------------~~g~l~~~~~--------------~~~~~g  133 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGG----SVSVFPLD-------------DDGSLGEVVQ--------------TVRHEG  133 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTT----EEEEEEEC-------------TTSEEEEEEE--------------EEESEE
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCC----eEEEEEcc-------------CCcccceeee--------------ecccCC
Confidence            3334456788999998888654333    56666652             2222111100              00000 


Q ss_pred             -CCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEe---e--cCCceeeeeecCCCEEEEEE
Q 039497          320 -SPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLI---K--DRTAFYNSWSPTEKHVIYTS  391 (642)
Q Consensus       320 -~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~---~--~~~~~~~~~spdg~~l~~~~  391 (642)
                       +.... ...........++|||++++...  .+...|++++++...  .....   .  .....++.|+|||+++|++.
T Consensus       134 ~g~~~~-rq~~~h~H~v~~~pdg~~v~v~d--lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~  210 (345)
T PF10282_consen  134 SGPNPD-RQEGPHPHQVVFSPDGRFVYVPD--LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN  210 (345)
T ss_dssp             EESSTT-TTSSTCEEEEEE-TTSSEEEEEE--TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred             CCCccc-ccccccceeEEECCCCCEEEEEe--cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec
Confidence             00000 00000012457899999887655  345677777776544  33211   1  56688999999999998887


Q ss_pred             cCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc---CC--CCccCcEECCCCCeEEEEeCCCCceeEEEEE
Q 039497          392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE---ET--GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD  466 (642)
Q Consensus       392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d  466 (642)
                      .      ..+.+.++.++.  .     .+ .+. ....+...   ..  .....+.+||||++|+.+....+.-.+|.+|
T Consensus       211 e------~s~~v~v~~~~~--~-----~g-~~~-~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  211 E------LSNTVSVFDYDP--S-----DG-SLT-EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             T------TTTEEEEEEEET--T-----TT-EEE-EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             C------CCCcEEEEeecc--c-----CC-cee-EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            3      477888888873  1     12 000 11112111   10  1345689999999988776544433444444


Q ss_pred             CCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       467 ~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      ..+|+. ..+..+.........+.++|||++|+.+....     +...+|.+|.++|.++.+..
T Consensus       276 ~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l~~~~~  333 (345)
T PF10282_consen  276 PATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKLTPVGS  333 (345)
T ss_dssp             TTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEE
T ss_pred             cCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcEEEecc
Confidence            456663 11222222222356789999999999988765     45667777878888776653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=3e-11  Score=123.38  Aligned_cols=458  Identities=12%  Similarity=0.028  Sum_probs=266.1

Q ss_pred             CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCC-eEEEEEccCCCcceEEEcCCCCcc
Q 039497            3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQ-TIAFISERSGSPRIYQTRPGSSKT   81 (642)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~-~laf~~~~~g~~~l~~~~~~g~~~   81 (642)
                      |.+.++.+.+    ..+-+-++++.+    ..-.++|-+|++.+....|- |+=. .|.+.+..++...+|.......-.
T Consensus       115 ~~g~LlAtgg----aD~~v~VWdi~~----~~~th~fkG~gGvVssl~F~-~~~~~~lL~sg~~D~~v~vwnl~~~~tcl  185 (775)
T KOG0319|consen  115 PTGTLLATGG----ADGRVKVWDIKN----GYCTHSFKGHGGVVSSLLFH-PHWNRWLLASGATDGTVRVWNLNDKRTCL  185 (775)
T ss_pred             CCCceEEecc----ccceEEEEEeeC----CEEEEEecCCCceEEEEEeC-CccchhheeecCCCceEEEEEcccCchHH
Confidence            4445555533    344555555555    14468999999999999999 8854 466677778888889873322100


Q ss_pred             ----cccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCc-eEecccCCCccCCceeCCC-----C
Q 039497           82 ----ELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASK-FTRLTPYGVVDYSPSVSYS-----G  151 (642)
Q Consensus        82 ----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~SPD-----G  151 (642)
                          .+.+....+    ...-++..++..+...          .+++.++..-+ .+.++....- ....+-++     |
T Consensus       186 ~~~~~H~S~vtsL----~~~~d~~~~ls~~RDk----------vi~vwd~~~~~~l~~lp~ye~~-E~vv~l~~~~~~~~  250 (775)
T KOG0319|consen  186 HTMILHKSAVTSL----AFSEDSLELLSVGRDK----------VIIVWDLVQYKKLKTLPLYESL-ESVVRLREELGGKG  250 (775)
T ss_pred             HHHHhhhhheeee----eeccCCceEEEeccCc----------EEEEeehhhhhhhheechhhhe-eeEEEechhcCCcc
Confidence                011111111    1111455566555443          23444654332 2233322222 22333333     4


Q ss_pred             cEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC-C----CcceEeeCCeEEEEEecCCCceEEEEEecCCCc
Q 039497          152 KFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER-G----GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL  226 (642)
Q Consensus       152 ~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~----~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~  226 (642)
                      .++..+...+            .+-.|+.++++........ .    ....-...++++.+..  +  .+|+.++.++..
T Consensus       251 ~~~~TaG~~g------------~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta--e--Qnl~l~d~~~l~  314 (775)
T KOG0319|consen  251 EYIITAGGSG------------VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA--E--QNLFLYDEDELT  314 (775)
T ss_pred             eEEEEecCCc------------eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc--c--ceEEEEEccccE
Confidence            4666665443            6778888888643332211 1    1123333445444442  2  377888777663


Q ss_pred             ccccCCccceeeCCCCCcccccee-ecCCcEEEEEEeccCCceeeEEEEEee-------cCCCCcccCCeecCCCCEEEE
Q 039497          227 EFLGFPIAPTRVTPPGVHCFTPAA-FHDGKRLAVATRRKNRNFRHIEIYDLT-------LNPNFHHYNPFVSANSEFIGY  298 (642)
Q Consensus       227 ~~~~~~~~~~~l~~~~~~~~~~~~-SpdG~~l~~~~~~~~~~~~~i~~~d~~-------~~~~~~~~~~~~spDg~~l~~  298 (642)
                             ...++.+-...+..+.| .|+-++|+++++..     .+++|++.       .++...+.....+.+|-.|+.
T Consensus       315 -------i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~-----~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat  382 (775)
T KOG0319|consen  315 -------IVKQIVGYNDEILDMKFLGPEESHLAVATNSP-----ELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLAT  382 (775)
T ss_pred             -------EehhhcCCchhheeeeecCCccceEEEEeCCC-----ceEEEecCCCceEEEeCchhheeeeeecccCcEEEE
Confidence                   34455554445666665 77888999977655     78888872       233333333443345544444


Q ss_pred             EEeecCCCCCCcccceEeeccCCCceeEEe-----eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCC--CeeEE--
Q 039497          299 HRFRGESTEGQSTIPHLEPVASPVKELRML-----RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTL--  369 (642)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~--~~~~l--  369 (642)
                      .+.+..      .++|..+-+.. ...-..     .......+++..+-.++.....+..-.+|.+..+..  ....+  
T Consensus       383 ~sKD~s------vilWr~~~~~~-~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~  455 (775)
T KOG0319|consen  383 GSKDKS------VILWRLNNNCS-KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC  455 (775)
T ss_pred             ecCCce------EEEEEecCCcc-hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence            433322      45554421111 110000     111134455555543333332233444454443111  11111  


Q ss_pred             -----eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEEC
Q 039497          370 -----IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCS  444 (642)
Q Consensus       370 -----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S  444 (642)
                           .++..+..++++|+.+.|+..+.       +....||+++.        .+     -.-.|..+. ..++.+.|+
T Consensus       456 ~~t~~aHdKdIN~Vaia~ndkLiAT~Sq-------DktaKiW~le~--------~~-----l~~vLsGH~-RGvw~V~Fs  514 (775)
T KOG0319|consen  456 RYTERAHDKDINCVAIAPNDKLIATGSQ-------DKTAKIWDLEQ--------LR-----LLGVLSGHT-RGVWCVSFS  514 (775)
T ss_pred             hHHHHhhcccccceEecCCCceEEeccc-------ccceeeecccC--------ce-----EEEEeeCCc-cceEEEEec
Confidence                 11677999999999998888774       78899999975        33     556677777 889999999


Q ss_pred             CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497          445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG  524 (642)
Q Consensus       445 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~  524 (642)
                      |..+.++..+   ++..|.+|.+++..-   ++.+..+...+-...|-.+|+.|+-...++-        |.+|++++++
T Consensus       515 ~~dq~laT~S---gD~TvKIW~is~fSC---lkT~eGH~~aVlra~F~~~~~qliS~~adGl--------iKlWnikt~e  580 (775)
T KOG0319|consen  515 KNDQLLATCS---GDKTVKIWSISTFSC---LKTFEGHTSAVLRASFIRNGKQLISAGADGL--------IKLWNIKTNE  580 (775)
T ss_pred             cccceeEecc---CCceEEEEEecccee---eeeecCccceeEeeeeeeCCcEEEeccCCCc--------EEEEeccchh
Confidence            9988887776   566888889888887   7888888777888899999999988887764        8899998876


Q ss_pred             eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       525 ~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      ...-. ..++.       .++.+.-++++..++..+.+
T Consensus       581 C~~tl-D~H~D-------rvWaL~~~~~~~~~~tgg~D  610 (775)
T KOG0319|consen  581 CEMTL-DAHND-------RVWALSVSPLLDMFVTGGGD  610 (775)
T ss_pred             hhhhh-hhccc-------eeEEEeecCccceeEecCCC
Confidence            65433 24444       67888888988855544444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.52  E-value=4.8e-11  Score=109.02  Aligned_cols=270  Identities=16%  Similarity=0.107  Sum_probs=180.8

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      ..|++|++.++++ ..+|  .|..||.-+..       +...++-+...++.-++||.|+.++-..-     .....+|+
T Consensus        61 ~~ws~Dsr~ivSa-SqDG--klIvWDs~Ttn-------K~haipl~s~WVMtCA~sPSg~~VAcGGL-----dN~Csiy~  125 (343)
T KOG0286|consen   61 MDWSTDSRRIVSA-SQDG--KLIVWDSFTTN-------KVHAIPLPSSWVMTCAYSPSGNFVACGGL-----DNKCSIYP  125 (343)
T ss_pred             eEecCCcCeEEee-ccCC--eEEEEEccccc-------ceeEEecCceeEEEEEECCCCCeEEecCc-----CceeEEEe
Confidence            5899999988887 5678  67777776653       45566666778888999999998888433     33556666


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCC--CccEEcCCCCEEEEEecCCCc
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNG--SFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~spdg~~l~~~~~~~~~  353 (642)
                      +......          |          .           .++.   ++  +....+  ....|-+|+. |+..   .+.
T Consensus       126 ls~~d~~----------g----------~-----------~~v~---r~--l~gHtgylScC~f~dD~~-ilT~---SGD  165 (343)
T KOG0286|consen  126 LSTRDAE----------G----------N-----------VRVS---RE--LAGHTGYLSCCRFLDDNH-ILTG---SGD  165 (343)
T ss_pred             ccccccc----------c----------c-----------ceee---ee--ecCccceeEEEEEcCCCc-eEec---CCC
Confidence            6321100          0          0           0000   00  111111  2335666665 4442   455


Q ss_pred             eeEEEEECCCCCeeEEee--cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      ...-++|+++++..+...  .+.+..+.++| +++.++-..       -+...+||++..        +.     ..+.+
T Consensus       166 ~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~-------cD~~aklWD~R~--------~~-----c~qtF  225 (343)
T KOG0286|consen  166 MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG-------CDKSAKLWDVRS--------GQ-----CVQTF  225 (343)
T ss_pred             ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc-------cccceeeeeccC--------cc-----eeEee
Confidence            778888999998777665  56788999999 888766554       377889999976        44     66777


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--CCcccceeEecCCCEEEEEecCCCCC
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTMPSWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~~~~  508 (642)
                      ..++ ..+..+.|-|+|..++..+++   ....++|+...+.   +......  ...+.+++||..|++|+....+.+  
T Consensus       226 ~ghe-sDINsv~ffP~G~afatGSDD---~tcRlyDlRaD~~---~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~--  296 (343)
T KOG0286|consen  226 EGHE-SDINSVRFFPSGDAFATGSDD---ATCRLYDLRADQE---LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT--  296 (343)
T ss_pred             cccc-cccceEEEccCCCeeeecCCC---ceeEEEeecCCcE---EeeeccCcccCCceeEEEcccccEEEeeecCCc--
Confidence            7777 788899999999887766532   3566778877664   2333222  234678899999997666555543  


Q ss_pred             CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                            +.+||.=.++..-+. .++++       ++..+..+|||.-|+..+-+.
T Consensus       297 ------c~vWDtlk~e~vg~L-~GHeN-------RvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  297 ------CNVWDTLKGERVGVL-AGHEN-------RVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             ------eeEeeccccceEEEe-eccCC-------eeEEEEECCCCcEEEecchhH
Confidence                  899997544444333 36776       789999999999887776553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.52  E-value=8.6e-11  Score=119.31  Aligned_cols=277  Identities=12%  Similarity=0.090  Sum_probs=151.8

Q ss_pred             ceEEEEcc-CCceEecc--cCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEec-CCCceeEee-cCC--
Q 039497          121 ALYSTDLK-ASKFTRLT--PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES-DPNKRVIVC-ERG--  193 (642)
Q Consensus       121 ~l~~~~~~-~~~~~~lt--~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~l~~-~~~--  193 (642)
                      .|..+++. +++.+.+.  .........++||||++|+.....           ...|.+|++. +++...+.. ...  
T Consensus        13 ~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~-----------~~~i~~~~~~~~g~l~~~~~~~~~~~   81 (330)
T PRK11028         13 QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP-----------EFRVLSYRIADDGALTFAAESPLPGS   81 (330)
T ss_pred             CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC-----------CCcEEEEEECCCCceEEeeeecCCCC
Confidence            45555654 34433332  222344567899999998766432           2357777776 344332221 112  


Q ss_pred             -CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497          194 -GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE  272 (642)
Q Consensus       194 -~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~  272 (642)
                       ...+++|||+.+|+....++...+|.++.++...      ...............+++|||++++++....    ..|.
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~------~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~----~~v~  151 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV------APIQIIEGLEGCHSANIDPDNRTLWVPCLKE----DRIR  151 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC------CceeeccCCCcccEeEeCCCCCEEEEeeCCC----CEEE
Confidence             2458899998888775556756666665333210      1111111222345567899999887755432    3788


Q ss_pred             EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497          273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL  352 (642)
Q Consensus       273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  352 (642)
                      +||+........                   .       ........        .......+.|+|||++++.....  
T Consensus       152 v~d~~~~g~l~~-------------------~-------~~~~~~~~--------~g~~p~~~~~~pdg~~lyv~~~~--  195 (330)
T PRK11028        152 LFTLSDDGHLVA-------------------Q-------EPAEVTTV--------EGAGPRHMVFHPNQQYAYCVNEL--  195 (330)
T ss_pred             EEEECCCCcccc-------------------c-------CCCceecC--------CCCCCceEEECCCCCEEEEEecC--
Confidence            888732110000                   0       00000000        00112356899999987776543  


Q ss_pred             ceeEEEEECC--CCCeeEEee----cC------CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          353 NAGIKIAKSD--GSKRWTLIK----DR------TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       353 ~~~l~~~d~~--~~~~~~l~~----~~------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                      ...|.+++++  +++.+.+..    ..      ....+.++|||++|+....      ..+.+.+|+++.  +     ++
T Consensus       196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~------~~~~I~v~~i~~--~-----~~  262 (330)
T PRK11028        196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR------TASLISVFSVSE--D-----GS  262 (330)
T ss_pred             CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC------CCCeEEEEEEeC--C-----CC
Confidence            4566666665  334322211    11      1224779999998888753      367888888866  3     11


Q ss_pred             CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497          421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE  471 (642)
Q Consensus       421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~  471 (642)
                       .+. ....+...  .....+.++|||++|+.+...++.-.||.++..+|.
T Consensus       263 -~~~-~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~  309 (330)
T PRK11028        263 -VLS-FEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGL  309 (330)
T ss_pred             -eEE-EeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCc
Confidence             000 11111111  244578999999999988765666667777766666

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=2.7e-12  Score=124.00  Aligned_cols=284  Identities=14%  Similarity=0.132  Sum_probs=181.9

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCc-EEEEEEeccCCceeeEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK-RLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~-~l~~~~~~~~~~~~~i~~  273 (642)
                      .+.|.|...++.+. +-++..+||.+|-+...       ..+.+--.++.+....|.|+|+ .+++..+++     -++.
T Consensus       218 sv~FHp~~plllva-G~d~~lrifqvDGk~N~-------~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk-----y~ys  284 (514)
T KOG2055|consen  218 SVQFHPTAPLLLVA-GLDGTLRIFQVDGKVNP-------KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK-----YLYS  284 (514)
T ss_pred             EEEecCCCceEEEe-cCCCcEEEEEecCccCh-------hheeeeeccCccceeeecCCCceEEEecccce-----EEEE
Confidence            46899998888888 77899999999866542       3333333466777889999999 555544443     7888


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  353 (642)
                      ||++.......                               .++.+-.      ......+..|||+++|++...   .
T Consensus       285 yDle~ak~~k~-------------------------------~~~~g~e------~~~~e~FeVShd~~fia~~G~---~  324 (514)
T KOG2055|consen  285 YDLETAKVTKL-------------------------------KPPYGVE------EKSMERFEVSHDSNFIAIAGN---N  324 (514)
T ss_pred             eeccccccccc-------------------------------cCCCCcc------cchhheeEecCCCCeEEEccc---C
Confidence            99854331111                               1111100      111234578999999999643   4


Q ss_pred             eeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497          354 AGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK  432 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (642)
                      +.|+++...+++...-.. .+.+..+.|+.||+.|+.+.       +.+.+.+|++..  .      .     ...+...
T Consensus       325 G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~-------~~GeV~v~nl~~--~------~-----~~~rf~D  384 (514)
T KOG2055|consen  325 GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG-------GTGEVYVWNLRQ--N------S-----CLHRFVD  384 (514)
T ss_pred             ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc-------CCceEEEEecCC--c------c-----eEEEEee
Confidence            789999888887544333 78899999999999888775       366888888865  1      2     4455554


Q ss_pred             cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC-CCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497          433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV-NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE  511 (642)
Q Consensus       433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~-~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~  511 (642)
                      .....-.++..|++|++++..+. .|--+||-.+.. .+..+++++.+.+....+.+++|+||+..|+..+...      
T Consensus       385 ~G~v~gts~~~S~ng~ylA~GS~-~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~------  457 (514)
T KOG2055|consen  385 DGSVHGTSLCISLNGSYLATGSD-SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK------  457 (514)
T ss_pred             cCccceeeeeecCCCceEEeccC-cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc------
Confidence            43234456888999999887764 354455543321 1222234555666666788899999999998888753      


Q ss_pred             ceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       512 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      ...|.++.+-+-.  ...  ++.. .+-.-..+..++|||.|.+|++....+
T Consensus       458 knalrLVHvPS~T--VFs--NfP~-~n~~vg~vtc~aFSP~sG~lAvGNe~g  504 (514)
T KOG2055|consen  458 KNALRLVHVPSCT--VFS--NFPT-SNTKVGHVTCMAFSPNSGYLAVGNEAG  504 (514)
T ss_pred             ccceEEEecccee--eec--cCCC-CCCcccceEEEEecCCCceEEeecCCC
Confidence            3446666654311  111  1100 000011577899999999998876654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.49  E-value=6.9e-12  Score=131.91  Aligned_cols=228  Identities=22%  Similarity=0.221  Sum_probs=161.8

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEEC-CCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKS-DGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~-~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      ....|||||+.++-.+.   ...|+++++ +.+...+...  ...+..+.|+|+|+.|+..+       .+..++||++.
T Consensus       207 ~~~~fs~d~~~l~s~s~---D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs-------~D~tvriWd~~  276 (456)
T KOG0266|consen  207 SDVAFSPDGSYLLSGSD---DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS-------DDGTVRIWDVR  276 (456)
T ss_pred             eeeEECCCCcEEEEecC---CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec-------CCCcEEEEecc
Confidence            45689999997766543   478888888 4434333333  56688999999997666665       38999999997


Q ss_pred             eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC--ccc
Q 039497          410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW--IDT  487 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~--~~~  487 (642)
                      .        +.     ..+.|..+. ..+..+.|++||+.|+..+.   +..|.+||+.++... -...+.....  .+.
T Consensus       277 ~--------~~-----~~~~l~~hs-~~is~~~f~~d~~~l~s~s~---d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~  338 (456)
T KOG0266|consen  277 T--------GE-----CVRKLKGHS-DGISGLAFSPDGNLLVSASY---DGTIRVWDLETGSKL-CLKLLSGAENSAPVT  338 (456)
T ss_pred             C--------Ce-----EEEeeeccC-CceEEEEECCCCCEEEEcCC---CccEEEEECCCCcee-eeecccCCCCCCcee
Confidence            6        23     667777776 78888999999999987753   348999999988820 0134443333  367


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      ...|+|+|++|+....+..        |.+||+..+....... .+....    .....+..+++|++++..+.+.    
T Consensus       339 ~~~fsp~~~~ll~~~~d~~--------~~~w~l~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~i~sg~~d~----  401 (456)
T KOG0266|consen  339 SVQFSPNGKYLLSASLDRT--------LKLWDLRSGKSVGTYT-GHSNLV----RCIFSPTLSTGGKLIYSGSEDG----  401 (456)
T ss_pred             EEEECCCCcEEEEecCCCe--------EEEEEccCCcceeeec-ccCCcc----eeEecccccCCCCeEEEEeCCc----
Confidence            7899999999998887754        8999998665543332 222100    0234556688999888777664    


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCc-eeeccCC-CCCCCCcEEecCCceEEeec
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWN-GYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~-~~~~~~~~~s~dg~~~~~~~  618 (642)
                                   .|+.|++.++. +.++..+ ...+..+.|+|...++++..
T Consensus       402 -------------~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  402 -------------SVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             -------------eEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence                         78899988554 5666666 55667889999998887765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.49  E-value=9e-12  Score=131.07  Aligned_cols=267  Identities=19%  Similarity=0.184  Sum_probs=179.6

Q ss_pred             CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC--ceeEeecCC---CcceEeeCCeEEEEEecCCCceEE
Q 039497          143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN--KRVIVCERG---GWPTWSGDSTIYFHRQADDGWWSI  217 (642)
Q Consensus       143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~l~~~~~---~~~~wspdg~~~~~~~~~~g~~~l  217 (642)
                      ....|||||++++....+.            .+.+|...+.+  ..+....+.   ....|+|||++++.. ..|.+..|
T Consensus       163 ~~~~fs~~g~~l~~~~~~~------------~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~-s~D~tiri  229 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDG------------LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG-SDDKTLRI  229 (456)
T ss_pred             EEEEEcCCCCeEEEccCCC------------cEEEeecccccchhhccccccccceeeeEECCCCcEEEEe-cCCceEEE
Confidence            4468999999999886555            57777776665  222221111   245999999977776 56776666


Q ss_pred             EEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEE
Q 039497          218 FRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIG  297 (642)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~  297 (642)
                      |.+ ...+.       ..+.+..+...+...+|+|+|+.|+....+     ..+++||+....                 
T Consensus       230 wd~-~~~~~-------~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~-----------------  279 (456)
T KOG0266|consen  230 WDL-KDDGR-------NLKTLKGHSTYVTSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGE-----------------  279 (456)
T ss_pred             eec-cCCCe-------EEEEecCCCCceEEEEecCCCCEEEEecCC-----CcEEEEeccCCe-----------------
Confidence            666 23332       556777887788999999999777774444     489999983311                 


Q ss_pred             EEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCee---EEee--c
Q 039497          298 YHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW---TLIK--D  372 (642)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~---~l~~--~  372 (642)
                                   ..   .       .+...........|++||+.|+..+.   .+.|.++|+.++...   .+..  .
T Consensus       280 -------------~~---~-------~l~~hs~~is~~~f~~d~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~~~~~~  333 (456)
T KOG0266|consen  280 -------------CV---R-------KLKGHSDGISGLAFSPDGNLLVSASY---DGTIRVWDLETGSKLCLKLLSGAEN  333 (456)
T ss_pred             -------------EE---E-------eeeccCCceEEEEECCCCCEEEEcCC---CccEEEEECCCCceeeeecccCCCC
Confidence                         00   0       01111112234589999998887643   578899999998843   2222  2


Q ss_pred             C-CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC--CccCcEECCCCCe
Q 039497          373 R-TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG--NNAFPSCSPDGKF  449 (642)
Q Consensus       373 ~-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~SpDg~~  449 (642)
                      . .+..+.|+|++++|+....       +..+.+|++..        +.     .......+...  ....+..+++|++
T Consensus       334 ~~~~~~~~fsp~~~~ll~~~~-------d~~~~~w~l~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (456)
T KOG0266|consen  334 SAPVTSVQFSPNGKYLLSASL-------DRTLKLWDLRS--------GK-----SVGTYTGHSNLVRCIFSPTLSTGGKL  393 (456)
T ss_pred             CCceeEEEECCCCcEEEEecC-------CCeEEEEEccC--------Cc-----ceeeecccCCcceeEecccccCCCCe
Confidence            2 4688999999999988863       67999999975        22     33444333311  3345566889998


Q ss_pred             EEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecC
Q 039497          450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNR  504 (642)
Q Consensus       450 l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~  504 (642)
                      ++..+.   +..|++|++.++..   +..+..+ ...+..+.|+|..+.++..+..
T Consensus       394 i~sg~~---d~~v~~~~~~s~~~---~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~  443 (456)
T KOG0266|consen  394 IYSGSE---DGSVYVWDSSSGGI---LQRLEGHSKAAVSDLSSHPTENLIASSSFE  443 (456)
T ss_pred             EEEEeC---CceEEEEeCCccch---hhhhcCCCCCceeccccCCCcCeeeecCcC
Confidence            887764   34899999998776   5666666 5566778999999988888744

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=9.9e-10  Score=111.51  Aligned_cols=470  Identities=13%  Similarity=0.089  Sum_probs=241.5

Q ss_pred             ecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCC--CcccccCCCCCCcccccccc-CCCEEEEEEeccCCCcc
Q 039497           39 LTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGS--SKTELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQI  115 (642)
Q Consensus        39 lt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~  115 (642)
                      ++-.++.....++| -+.++|| .++.+|..+||.....=  +....++....   -...+| ++++|+-+.-.      
T Consensus        21 ~d~~Ps~I~slA~s-~kS~~lA-vsRt~g~IEiwN~~~~w~~~~vi~g~~drs---IE~L~W~e~~RLFS~g~s------   89 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYS-HKSNQLA-VSRTDGNIEIWNLSNNWFLEPVIHGPEDRS---IESLAWAEGGRLFSSGLS------   89 (691)
T ss_pred             EeeeccceEEEEEe-ccCCcee-eeccCCcEEEEccCCCceeeEEEecCCCCc---eeeEEEccCCeEEeecCC------
Confidence            33456666788899 8888899 67789999999973321  11111111111   113344 35555433322      


Q ss_pred             cccccceEEEEccCCceEe-cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCcee--EeecC
Q 039497          116 FKSWSALYSTDLKASKFTR-LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV--IVCER  192 (642)
Q Consensus       116 ~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--l~~~~  192 (642)
                          |.|--+|+-+++... +........+.+++|.++.++...+++            .++.+....++.+-  +....
T Consensus        90 ----g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddG------------vl~~~s~~p~~I~~~r~l~rq  153 (691)
T KOG2048|consen   90 ----GSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDG------------VLYDFSIGPDKITYKRSLMRQ  153 (691)
T ss_pred             ----ceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCc------------eEEEEecCCceEEEEeecccc
Confidence                256666777766543 444444556788999999999886654            56666655544221  11111


Q ss_pred             -CC--cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC----CCccccceee----cCCcEEEEEE
Q 039497          193 -GG--WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP----GVHCFTPAAF----HDGKRLAVAT  261 (642)
Q Consensus       193 -~~--~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~S----pdG~~l~~~~  261 (642)
                       +.  .+.|.|++..++.. ..||...  .+|...+.       ....++-.    ......+.||    .|+. |+.  
T Consensus       154 ~sRvLslsw~~~~~~i~~G-s~Dg~Ir--iwd~~~~~-------t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~s--  220 (691)
T KOG2048|consen  154 KSRVLSLSWNPTGTKIAGG-SIDGVIR--IWDVKSGQ-------TLHIITMQLDRLSKREPTIVWSVLFLRDST-IAS--  220 (691)
T ss_pred             cceEEEEEecCCccEEEec-ccCceEE--EEEcCCCc-------eEEEeeecccccccCCceEEEEEEEeecCc-EEE--
Confidence             21  46999999877777 5677444  44555542       12211111    1111223332    3332 333  


Q ss_pred             eccCCceeeEEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe-----
Q 039497          262 RRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML-----  328 (642)
Q Consensus       262 ~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  328 (642)
                         +.....+.+||...        .+...+...+..+++.+++....++..      ..+...  ....+....     
T Consensus       221 ---gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~i------i~~~~~--~~~~~wv~~~~r~~  289 (691)
T KOG2048|consen  221 ---GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKI------IQYSLT--TNKSEWVINSRRDL  289 (691)
T ss_pred             ---ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCce------EEEEec--CCccceeeeccccC
Confidence               44556899999843        334455556666666666665444441      111111  110000000     


Q ss_pred             -eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC---CCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497          329 -RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG---SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ  404 (642)
Q Consensus       329 -~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~---~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  404 (642)
                       ....+..+..++   +.+..  .....|++.....   ...++......-..+..+|.. +|+....       .....
T Consensus       290 h~hdvrs~av~~~---~l~sg--G~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~-~L~~~w~-------~h~v~  356 (691)
T KOG2048|consen  290 HAHDVRSMAVIEN---ALISG--GRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPEN-RLLVLWK-------AHGVD  356 (691)
T ss_pred             Ccccceeeeeecc---eEEec--ceeeEEEEccccccCchhhhccccccccceeecCccc-eEEEEec-------ccccc
Confidence             000011111211   11111  1112222222111   000110000011112223332 3333322       45566


Q ss_pred             EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-  483 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-  483 (642)
                      +|.+..  ..   ..|+.-....-.+...+...+...+.||||++|++..-.  ...||.+.......   ++.+...+ 
T Consensus       357 lwrlGS--~~---~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~--~~~iy~L~~~~~vk---~~~v~~~~~  426 (691)
T KOG2048|consen  357 LWRLGS--VI---LQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS--RTKIYRLQPDPNVK---VINVDDVPL  426 (691)
T ss_pred             ceeccC--cc---cccccChhhheeeecCCccceeeeccCCCCCEEEEeecc--ceEEEEeccCccee---EEEeccchh
Confidence            777644  10   011100002222322222567778999999999998753  34777777664221   23333222 


Q ss_pred             --CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497          484 --WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       484 --~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                        .......|+-|++.+++.+.+       ...|...++++...+.+.......    .+..+..++.|+||++|+..+.
T Consensus       427 ~~~~a~~i~ftid~~k~~~~s~~-------~~~le~~el~~ps~kel~~~~~~~----~~~~I~~l~~SsdG~yiaa~~t  495 (691)
T KOG2048|consen  427 ALLDASAISFTIDKNKLFLVSKN-------IFSLEEFELETPSFKELKSIQSQA----KCPSISRLVVSSDGNYIAAIST  495 (691)
T ss_pred             hhccceeeEEEecCceEEEEecc-------cceeEEEEecCcchhhhhcccccc----CCCcceeEEEcCCCCEEEEEec
Confidence              234567899999998888833       234888888776665554322221    1235778999999999999986


Q ss_pred             cCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc-CCCCCCCCcEEecC
Q 039497          562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT-WNGYENGTPAWHPG  610 (642)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt-~~~~~~~~~~~s~d  610 (642)
                      .+                 .|++|++.+.+...|. .-+..++..+++|.
T Consensus       496 ~g-----------------~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~  528 (691)
T KOG2048|consen  496 RG-----------------QIFVYNLETLESHLLKVRLNIDVTAAAFSPF  528 (691)
T ss_pred             cc-----------------eEEEEEcccceeecchhccCcceeeeecccc
Confidence            54                 8999999998866655 33345566677754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2.9e-10  Score=105.46  Aligned_cols=272  Identities=13%  Similarity=0.180  Sum_probs=166.5

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY  274 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~  274 (642)
                      .+.|+++|..+.+. ..+...+||  +...+.       +...+....+.+..+.|......+......   ...+|+..
T Consensus        19 sl~fs~~G~~lits-s~dDsl~LY--d~~~g~-------~~~ti~skkyG~~~~~Fth~~~~~i~sStk---~d~tIryL   85 (311)
T KOG1446|consen   19 SLDFSDDGLLLITS-SEDDSLRLY--DSLSGK-------QVKTINSKKYGVDLACFTHHSNTVIHSSTK---EDDTIRYL   85 (311)
T ss_pred             EEEecCCCCEEEEe-cCCCeEEEE--EcCCCc-------eeeEeecccccccEEEEecCCceEEEccCC---CCCceEEE
Confidence            46899999877775 445544554  555553       445555555556666665444445553331   12356655


Q ss_pred             EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce
Q 039497          275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA  354 (642)
Q Consensus       275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  354 (642)
                      ++..              .++|                   ....+-...+       ..+..+|-++.++-.+   -..
T Consensus        86 sl~d--------------Nkyl-------------------RYF~GH~~~V-------~sL~~sP~~d~FlS~S---~D~  122 (311)
T KOG1446|consen   86 SLHD--------------NKYL-------------------RYFPGHKKRV-------NSLSVSPKDDTFLSSS---LDK  122 (311)
T ss_pred             Eeec--------------CceE-------------------EEcCCCCceE-------EEEEecCCCCeEEecc---cCC
Confidence            5522              1111                   1111111111       1346788777554433   235


Q ss_pred             eEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497          355 GIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE  434 (642)
Q Consensus       355 ~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  434 (642)
                      .|.+||+...+..-+........++|.|.|-.+|....       ...+.||++..- +     .|   |+..-.+....
T Consensus       123 tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~-------~~~IkLyD~Rs~-d-----kg---PF~tf~i~~~~  186 (311)
T KOG1446|consen  123 TVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG-------SELIKLYDLRSF-D-----KG---PFTTFSITDND  186 (311)
T ss_pred             eEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC-------CCeEEEEEeccc-C-----CC---CceeEccCCCC
Confidence            78888888777666666555667899999987777653       448999998651 1     12   22333344233


Q ss_pred             CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC---cccceeEecCCCEEEEEecCCCCCCCC
Q 039497          435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW---IDTMPSWSPKGDLIAFSSNRHNPDNVE  511 (642)
Q Consensus       435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~---~~~~~~~spdG~~l~~~~~~~~~~~~~  511 (642)
                      ......+.||||||+|+...+.   ..++++|.=+|..   ...+...+.   ......|+|||++|+..+.++.     
T Consensus       187 ~~ew~~l~FS~dGK~iLlsT~~---s~~~~lDAf~G~~---~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~-----  255 (311)
T KOG1446|consen  187 EAEWTDLEFSPDGKSILLSTNA---SFIYLLDAFDGTV---KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT-----  255 (311)
T ss_pred             ccceeeeEEcCCCCEEEEEeCC---CcEEEEEccCCcE---eeeEeeccCCCCcceeEEECCCCcEEEEecCCCc-----
Confidence            2456679999999999988843   4799999988885   344443322   2245699999998888877765     


Q ss_pred             ceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497          512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       512 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                         |++|++++++..........+       .+..+.|.|-  +..|.+.
T Consensus       256 ---i~vw~~~tg~~v~~~~~~~~~-------~~~~~~fnP~--~~mf~sa  293 (311)
T KOG1446|consen  256 ---IHVWNLETGKKVAVLRGPNGG-------PVSCVRFNPR--YAMFVSA  293 (311)
T ss_pred             ---EEEEEcCCCcEeeEecCCCCC-------CccccccCCc--eeeeeec
Confidence               999999998887766543233       3455667773  4444443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=5.5e-11  Score=117.60  Aligned_cols=336  Identities=15%  Similarity=0.184  Sum_probs=197.7

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEecc------CCce
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRK------NRNF  268 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~------~~~~  268 (642)
                      ...|||-|..+++-- ..| ..||     +|.    +-....++..++  +..+.|||.-++|+.-+...      ....
T Consensus       215 yv~wSP~GTYL~t~H-k~G-I~lW-----GG~----~f~r~~RF~Hp~--Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~  281 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFH-KQG-IALW-----GGE----SFDRIQRFYHPG--VQFIDFSPNEKYLVTYSPEPIIVEEDDNEG  281 (698)
T ss_pred             eEEecCCceEEEEEe-ccc-eeee-----cCc----cHHHHHhccCCC--ceeeecCCccceEEEecCCccccCcccCCC
Confidence            469999998887751 112 2343     221    011345555555  55678999999998754322      1234


Q ss_pred             eeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe
Q 039497          269 RHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH  348 (642)
Q Consensus       269 ~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  348 (642)
                      ..+.+||+.++..-..             |                 ...+.+.....       ...||.|++++|-..
T Consensus       282 ~~l~IWDI~tG~lkrs-------------F-----------------~~~~~~~~~WP-------~frWS~DdKy~Arm~  324 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRS-------------F-----------------PVIKSPYLKWP-------IFRWSHDDKYFARMT  324 (698)
T ss_pred             ceEEEEEccccchhcc-------------e-----------------eccCCCccccc-------eEEeccCCceeEEec
Confidence            5777888744321100             0                 00011111111       348999999988755


Q ss_pred             cCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccc
Q 039497          349 DFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIP  424 (642)
Q Consensus       349 ~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  424 (642)
                      .    ..|-+++...-  ..+-.    ..++..+.|||.+..|||....    .++...++-.+..       |.+.   
T Consensus       325 ~----~sisIyEtpsf--~lld~Kslki~gIr~FswsP~~~llAYwtpe----~~~~parvtL~ev-------Ps~~---  384 (698)
T KOG2314|consen  325 G----NSISIYETPSF--MLLDKKSLKISGIRDFSWSPTSNLLAYWTPE----TNNIPARVTLMEV-------PSKR---  384 (698)
T ss_pred             c----ceEEEEecCce--eeecccccCCccccCcccCCCcceEEEEccc----ccCCcceEEEEec-------Cccc---
Confidence            3    56666665441  11111    4578899999999999998743    2222223333332       1121   


Q ss_pred             cceEEccccCCCCccCcEECCCCCeEEEEeCCCC---------ceeEEEEECCCCccccceeeCCCCCCcccceeEecCC
Q 039497          425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG---------HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG  495 (642)
Q Consensus       425 ~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g---------~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG  495 (642)
                       .++.-.-.. .....+.|-..|++|++-..|..         +-+|+++.-  ...   +.........+..++|-|.|
T Consensus       385 -~iRt~nlfn-VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire--KdI---pve~velke~vi~FaWEP~g  457 (698)
T KOG2314|consen  385 -EIRTKNLFN-VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE--KDI---PVEVVELKESVIAFAWEPHG  457 (698)
T ss_pred             -eeeecccee-eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec--cCC---CceeeecchheeeeeeccCC
Confidence             222211111 33455789999999999765532         124555443  232   12222233446678999999


Q ss_pred             CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCC
Q 039497          496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ  575 (642)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~  575 (642)
                      ++++..+.+...   ...+.|-+....++.+.+......        ..+.+.|||-|++++..+..+.           
T Consensus       458 dkF~vi~g~~~k---~tvsfY~~e~~~~~~~lVk~~dk~--------~~N~vfwsPkG~fvvva~l~s~-----------  515 (698)
T KOG2314|consen  458 DKFAVISGNTVK---NTVSFYAVETNIKKPSLVKELDKK--------FANTVFWSPKGRFVVVAALVSR-----------  515 (698)
T ss_pred             CeEEEEEccccc---cceeEEEeecCCCchhhhhhhccc--------ccceEEEcCCCcEEEEEEeccc-----------
Confidence            999998877642   455566666555555555433221        4578999999999998876542           


Q ss_pred             CCCCCcEEEEEcCCCceeeccCCC-CCCCCcEEecCCceEEeecCCCcccccceeeee
Q 039497          576 FQPYGDLYVVKLDGSGLRRLTWNG-YENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQF  632 (642)
Q Consensus       576 ~~~~~~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~  632 (642)
                         .++|+.||.+-...+++.... .....+.|.|.|+|++++.+..-+-.+..|-.|
T Consensus       516 ---~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~  570 (698)
T KOG2314|consen  516 ---RGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIF  570 (698)
T ss_pred             ---ccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEE
Confidence               459999998854444333322 234678999999999998877755555555544

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.47  E-value=4.3e-10  Score=115.26  Aligned_cols=231  Identities=19%  Similarity=0.204  Sum_probs=159.3

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..|-|.++.|+....   .+.|.++|+.+........  .+.+..+..+||++.++..+.       +..+.+|+.....
T Consensus       418 ~~Fvpgd~~Iv~G~k---~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa-------DktVkfWdf~l~~  487 (888)
T KOG0306|consen  418 SKFVPGDRYIVLGTK---NGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSA-------DKTVKFWDFKLVV  487 (888)
T ss_pred             EEecCCCceEEEecc---CCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecC-------CcEEEEEeEEEEe
Confidence            367888887777433   4678888888776554444  778999999999999988874       7899999987622


Q ss_pred             CCCCCCCCCc--ccc-ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce
Q 039497          413 DPSDDNNREE--IPC-DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP  489 (642)
Q Consensus       413 ~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~  489 (642)
                      +   .|+...  +.- ..+.|.-.  ..+..+.+||||++|+..--. ..-.||.+|  +=+.   -..|..+.-.+..+
T Consensus       488 ~---~~gt~~k~lsl~~~rtLel~--ddvL~v~~Spdgk~LaVsLLd-nTVkVyflD--tlKF---flsLYGHkLPV~sm  556 (888)
T KOG0306|consen  488 S---VPGTQKKVLSLKHTRTLELE--DDVLCVSVSPDGKLLAVSLLD-NTVKVYFLD--TLKF---FLSLYGHKLPVLSM  556 (888)
T ss_pred             c---cCcccceeeeeccceEEecc--ccEEEEEEcCCCcEEEEEecc-CeEEEEEec--ceee---eeeecccccceeEE
Confidence            2   111110  000 01222222  356678999999999876543 334555555  4443   35567777788889


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP  569 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~  569 (642)
                      ..|||++.|+..+.+.+        +.+|-++-|....-.. .++.       .+..+.|-|+ .+++|++...+     
T Consensus       557 DIS~DSklivTgSADKn--------VKiWGLdFGDCHKS~f-AHdD-------Svm~V~F~P~-~~~FFt~gKD~-----  614 (888)
T KOG0306|consen  557 DISPDSKLIVTGSADKN--------VKIWGLDFGDCHKSFF-AHDD-------SVMSVQFLPK-THLFFTCGKDG-----  614 (888)
T ss_pred             eccCCcCeEEeccCCCc--------eEEeccccchhhhhhh-cccC-------ceeEEEEccc-ceeEEEecCcc-----
Confidence            99999999998888765        7788777666544332 3344       5678999995 45777776543     


Q ss_pred             CCCCCCCCCCCcEEEEEcCC-CceeeccCCCCCCCCcEEecCCceEEeecC
Q 039497          570 VSWPNQFQPYGDLYVVKLDG-SGLRRLTWNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       570 ~~~~~~~~~~~~l~~~~~~~-~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                                 .+-.||-+. ..++.|..+...+..++.+|+|.+++++..
T Consensus       615 -----------kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh  654 (888)
T KOG0306|consen  615 -----------KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH  654 (888)
T ss_pred             -----------eEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence                       788887543 346778888888899999999999998755

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.46  E-value=2.8e-11  Score=108.83  Aligned_cols=220  Identities=15%  Similarity=0.108  Sum_probs=141.9

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+..|+|...-++++.  .+...|.++|...++....+. .+.-..+.|+|+|+++++..+       +..+.+.+... 
T Consensus        68 dql~w~~~~~d~~ata--s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-------dD~it~id~r~-  137 (313)
T KOG1407|consen   68 DQLCWDPKHPDLFATA--SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-------DDRITFIDART-  137 (313)
T ss_pred             hhheeCCCCCcceEEe--cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-------cccEEEEEecc-
Confidence            3567877655455544  234677888887777665554 556678899999999999875       45565555533 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                       .            ....-.... .....+.|+-++ -+.|..+..|..+|..|.  .-+.   +..|..++..-..+.|
T Consensus       138 -~------------~~~~~~~~~-~e~ne~~w~~~n-d~Fflt~GlG~v~ILsyp--sLkp---v~si~AH~snCicI~f  197 (313)
T KOG1407|consen  138 -Y------------KIVNEEQFK-FEVNEISWNNSN-DLFFLTNGLGCVEILSYP--SLKP---VQSIKAHPSNCICIEF  197 (313)
T ss_pred             -c------------ceeehhccc-ceeeeeeecCCC-CEEEEecCCceEEEEecc--cccc---ccccccCCcceEEEEE
Confidence             1            111111111 234557888555 456666655655666555  3333   5677777777777899


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      +|+|++++..+.+.-        +-+||++.- ..+.++...+         ++..++||-||+.|+..+.+--.     
T Consensus       198 ~p~GryfA~GsADAl--------vSLWD~~ELiC~R~isRldw---------pVRTlSFS~dg~~lASaSEDh~I-----  255 (313)
T KOG1407|consen  198 DPDGRYFATGSADAL--------VSLWDVDELICERCISRLDW---------PVRTLSFSHDGRMLASASEDHFI-----  255 (313)
T ss_pred             CCCCceEeeccccce--------eeccChhHhhhheeeccccC---------ceEEEEeccCcceeeccCccceE-----
Confidence            999999999988763        678888643 2344554443         46889999999999877765311     


Q ss_pred             CCCCCCCCCCcEEEEEcCCC-ceeeccCCCCCCCCcEEecCCceEEee
Q 039497          571 SWPNQFQPYGDLYVVKLDGS-GLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                                +|.  ++.+| ++..+. ..+...+++|+|...+|+..
T Consensus       256 ----------DIA--~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA  290 (313)
T KOG1407|consen  256 ----------DIA--EVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYA  290 (313)
T ss_pred             ----------EeE--ecccCCeEEEee-ccCCceeEEecCCCceeeEE
Confidence                      333  33444 345544 34556799999998777543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.46  E-value=1.9e-09  Score=110.65  Aligned_cols=471  Identities=14%  Similarity=0.046  Sum_probs=261.5

Q ss_pred             eeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCC-CCcccccccc--CCCEEEEEEeccCCCcccccccc
Q 039497           45 INFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIP-CSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSA  121 (642)
Q Consensus        45 ~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~  121 (642)
                      ..-..+-+ ||+-.|| .+=.+|..+||....+- .+..+...+ .++   ...+  .|.+++- +..+         ++
T Consensus        67 evt~l~~~-~d~l~lA-VGYaDGsVqif~~~s~~-~~~tfngHK~AVt---~l~fd~~G~rlaS-GskD---------t~  130 (888)
T KOG0306|consen   67 EVTCLRSS-DDILLLA-VGYADGSVQIFSLESEE-ILITFNGHKAAVT---TLKFDKIGTRLAS-GSKD---------TD  130 (888)
T ss_pred             eEEEeecc-CCcceEE-EEecCceEEeeccCCCc-eeeeecccccceE---EEEEcccCceEee-cCCC---------cc
Confidence            44555566 7777666 55668999999872221 111110001 111   0112  2333332 3222         25


Q ss_pred             eEEEEccCCce-EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-cceEe
Q 039497          122 LYSTDLKASKF-TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG-WPTWS  199 (642)
Q Consensus       122 l~~~~~~~~~~-~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~ws  199 (642)
                      |..+|+-+... .+|-.+.......-|.-+.++|+.++-+.            .|-+|++++..-....-.+.+ .-++.
T Consensus       131 IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs------------~iK~WdL~tqhCf~Thvd~r~Eiw~l~  198 (888)
T KOG0306|consen  131 IIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDS------------MIKFWDLETQHCFETHVDHRGEIWALV  198 (888)
T ss_pred             EEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCc------------eEEEEecccceeeeEEecccceEEEEE
Confidence            66667765432 35555555555666776667777665544            688899988764443332222 11333


Q ss_pred             eCCeEEEEEecCCCceEEEEEecCCCcccccCCcccee------e-CCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497          200 GDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTR------V-TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE  272 (642)
Q Consensus       200 pdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~------l-~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~  272 (642)
                      -+++++++. ..++...+|.+........   ......      + ..........+..+++++++....++     -+.
T Consensus       199 ~~~~~lvt~-~~dse~~v~~L~~~~D~~~---~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~-----~~e  269 (888)
T KOG0306|consen  199 LDEKLLVTA-GTDSELKVWELAFEDDEKE---TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADK-----VIE  269 (888)
T ss_pred             EecceEEEE-ecCCceEEEEeeccccccc---ccccceeeccceeeeccCCceeEEeecCcccEEEEecchh-----hhh
Confidence            333555555 4567778898865543210   000000      1 11112233444567788777753322     222


Q ss_pred             EEEe------------------------------------------ecCCCCcccCCeecCCCCEE-EEEEeecCCCCCC
Q 039497          273 IYDL------------------------------------------TLNPNFHHYNPFVSANSEFI-GYHRFRGESTEGQ  309 (642)
Q Consensus       273 ~~d~------------------------------------------~~~~~~~~~~~~~spDg~~l-~~~~~~~~~~~~~  309 (642)
                      +|.+                                          .......+.++.|.|+++.. .+....+.     
T Consensus       270 ~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nN-----  344 (888)
T KOG0306|consen  270 LFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANN-----  344 (888)
T ss_pred             heeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecC-----
Confidence            2222                                          00112234456677766543 11111111     


Q ss_pred             cccceEeeccCCC-------ceeEEe--eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeee
Q 039497          310 STIPHLEPVASPV-------KELRML--RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSW  380 (642)
Q Consensus       310 ~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  380 (642)
                      ....+-.....+.       ..++..  +...+.+.+|.|...++-    .....|-+|+.++.+..+....+.+....|
T Consensus       345 tv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S----ga~~SikiWn~~t~kciRTi~~~y~l~~~F  420 (888)
T KOG0306|consen  345 TVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS----GAGESIKIWNRDTLKCIRTITCGYILASKF  420 (888)
T ss_pred             ceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee----cCCCcEEEEEccCcceeEEeccccEEEEEe
Confidence            1111211111111       111111  112245677877653333    334678888888776555545567788899


Q ss_pred             ecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCce
Q 039497          381 SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK  460 (642)
Q Consensus       381 spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~  460 (642)
                      -|.+++++....       .+.+.++++..        ..     ....+..+. +.++.++.+||++.++..+.+   .
T Consensus       421 vpgd~~Iv~G~k-------~Gel~vfdlaS--------~~-----l~Eti~AHd-gaIWsi~~~pD~~g~vT~saD---k  476 (888)
T KOG0306|consen  421 VPGDRYIVLGTK-------NGELQVFDLAS--------AS-----LVETIRAHD-GAIWSISLSPDNKGFVTGSAD---K  476 (888)
T ss_pred             cCCCceEEEecc-------CCceEEEEeeh--------hh-----hhhhhhccc-cceeeeeecCCCCceEEecCC---c
Confidence            999998887764       78899999876        22     344445555 888999999999999887733   3


Q ss_pred             eEEEEECC-----CCccccceeeC-------CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEe
Q 039497          461 NLFVLDAV-----NGEFNGDIRQL-------TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI  528 (642)
Q Consensus       461 ~l~~~d~~-----~g~~~~~~~~l-------~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  528 (642)
                      .+-.|+..     .|..   -+.|       ......+..+.+||||++|+..--+++        +.+|-+++-+.. +
T Consensus       477 tVkfWdf~l~~~~~gt~---~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT--------VkVyflDtlKFf-l  544 (888)
T KOG0306|consen  477 TVKFWDFKLVVSVPGTQ---KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNT--------VKVYFLDTLKFF-L  544 (888)
T ss_pred             EEEEEeEEEEeccCccc---ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCe--------EEEEEecceeee-e
Confidence            44444421     1221   0111       112334567899999999998887654        555555554443 3


Q ss_pred             eecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEE
Q 039497          529 HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAW  607 (642)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~  607 (642)
                      ...++.-       ++..+.+|||++.|+..+.+.+.               .||  -++-|. .+-+-.+...+.++.|
T Consensus       545 sLYGHkL-------PV~smDIS~DSklivTgSADKnV---------------KiW--GLdFGDCHKS~fAHdDSvm~V~F  600 (888)
T KOG0306|consen  545 SLYGHKL-------PVLSMDISPDSKLIVTGSADKNV---------------KIW--GLDFGDCHKSFFAHDDSVMSVQF  600 (888)
T ss_pred             eeccccc-------ceeEEeccCCcCeEEeccCCCce---------------EEe--ccccchhhhhhhcccCceeEEEE
Confidence            3345544       67889999999999888877643               455  455444 4556667777789999


Q ss_pred             ecCCceEEeecCCC
Q 039497          608 HPGNQLDLGKLRLE  621 (642)
Q Consensus       608 s~dg~~~~~~~~~~  621 (642)
                      -|+...|.++...+
T Consensus       601 ~P~~~~FFt~gKD~  614 (888)
T KOG0306|consen  601 LPKTHLFFTCGKDG  614 (888)
T ss_pred             cccceeEEEecCcc
Confidence            99888888875555

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=2.3e-11  Score=112.28  Aligned_cols=281  Identities=16%  Similarity=0.165  Sum_probs=157.8

Q ss_pred             cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCce-----eEeecCC--CcceEeeCCeEEEE
Q 039497          135 LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKR-----VIVCERG--GWPTWSGDSTIYFH  207 (642)
Q Consensus       135 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~l~~~~~--~~~~wspdg~~~~~  207 (642)
                      |..+........||.|||+||....++            .|.+|++.+=..+     +...+.+  ..+.|+||-+-+++
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr------------~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv  149 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDR------------SIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV  149 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCc------------eEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE
Confidence            444556667899999999999998776            6778887653211     1111112  24589999864444


Q ss_pred             EecCCCceEEEEEecCCCcccccCCccceeeCC---------CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec
Q 039497          208 RQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP---------PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL  278 (642)
Q Consensus       208 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~  278 (642)
                      .........+|.++-.+...      -....+.         +...+..+-+...+++|+.++...     .|.+|++. 
T Consensus       150 ~~~~g~~l~vyk~~K~~dG~------~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt-----~i~lw~lk-  217 (420)
T KOG2096|consen  150 SVKRGNKLCVYKLVKKTDGS------GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDT-----KICLWDLK-  217 (420)
T ss_pred             EEccCCEEEEEEeeecccCC------CCcccccccccccchhcccceEEEeecCCceEEEEecCCC-----cEEEEecC-
Confidence            42334445666665433210      1111111         011122233345667776654433     77777772 


Q ss_pred             CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEE
Q 039497          279 NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKI  358 (642)
Q Consensus       279 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~  358 (642)
                                    |+.|-                          .+...+......+.||+|++|+.... .....+|-
T Consensus       218 --------------Gq~L~--------------------------~idtnq~~n~~aavSP~GRFia~~gF-TpDVkVwE  256 (420)
T KOG2096|consen  218 --------------GQLLQ--------------------------SIDTNQSSNYDAAVSPDGRFIAVSGF-TPDVKVWE  256 (420)
T ss_pred             --------------Cceee--------------------------eeccccccccceeeCCCCcEEEEecC-CCCceEEE
Confidence                          10000                          00011122234467888877766443 22233332


Q ss_pred             E--ECCCC--CeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          359 A--KSDGS--KRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       359 ~--d~~~~--~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      .  .-+|.  +..++..    ...+..++||++.++++.++.       ++..+||+.+.+-.    .+.     .++.|
T Consensus       257 ~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk-------DG~wriwdtdVrY~----~~q-----Dpk~L  320 (420)
T KOG2096|consen  257 PIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK-------DGKWRIWDTDVRYE----AGQ-----DPKIL  320 (420)
T ss_pred             EEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec-------CCcEEEeeccceEe----cCC-----CchHh
Confidence            1  11221  1111111    345778899999999999985       78999999865211    111     22222


Q ss_pred             cc-------cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccceeEecCCCEEEEEe
Q 039497          431 TK-------EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIAFSS  502 (642)
Q Consensus       431 ~~-------~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~  502 (642)
                      ..       .. ...-.+.+||.|+.|+.+..    ..|.++...+|+.   ...+. -+...+..++|++||++++..+
T Consensus       321 k~g~~pl~aag-~~p~RL~lsP~g~~lA~s~g----s~l~~~~se~g~~---~~~~e~~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  321 KEGSAPLHAAG-SEPVRLELSPSGDSLAVSFG----SDLKVFASEDGKD---YPELEDIHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             hcCCcchhhcC-CCceEEEeCCCCcEEEeecC----CceEEEEcccCcc---chhHHHhhcCceeeEEecCCCcEEeeec
Confidence            22       11 23346899999999887763    3688888888874   22232 2445678899999999998776


Q ss_pred             cC
Q 039497          503 NR  504 (642)
Q Consensus       503 ~~  504 (642)
                      ++
T Consensus       393 dr  394 (420)
T KOG2096|consen  393 DR  394 (420)
T ss_pred             ce
Confidence            65

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.44  E-value=1.5e-11  Score=120.37  Aligned_cols=301  Identities=15%  Similarity=0.091  Sum_probs=176.9

Q ss_pred             eeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe
Q 039497          237 RVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE  316 (642)
Q Consensus       237 ~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~  316 (642)
                      ++..+.--+...++.|.|-+++.     |+....+.+||+..-.                      ..       .....
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~s-----Gs~Dy~v~~wDf~gMd----------------------as-------~~~fr  207 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVS-----GSLDYTVKFWDFQGMD----------------------AS-------MRSFR  207 (641)
T ss_pred             eccCCceEEEEeeecCCCceeee-----ccccceEEEEeccccc----------------------cc-------chhhh
Confidence            34444334566778899988887     6667799999983211                      00       00000


Q ss_pred             eccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----------cC---Cceeeeeec
Q 039497          317 PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----------DR---TAFYNSWSP  382 (642)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----------~~---~~~~~~~sp  382 (642)
                      .+...      -......+.||+.|.+|+.++.   ..+..++|.+|.+......           .+   .+....|.|
T Consensus       208 ~l~P~------E~h~i~sl~ys~Tg~~iLvvsg---~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP  278 (641)
T KOG0772|consen  208 QLQPC------ETHQINSLQYSVTGDQILVVSG---SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHP  278 (641)
T ss_pred             ccCcc------cccccceeeecCCCCeEEEEec---CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccccc
Confidence            00000      0011234578888888777643   4666777777766544332           11   244668999


Q ss_pred             CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497          383 TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL  462 (642)
Q Consensus       383 dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l  462 (642)
                      +.+..+.++      ..++.++||+++.        ..+++.--......+....+...+|+|||++|+..- .+|  .|
T Consensus       279 ~~k~~FlT~------s~DgtlRiWdv~~--------~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc-~DG--SI  341 (641)
T KOG0772|consen  279 DNKEEFLTC------SYDGTLRIWDVNN--------TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC-LDG--SI  341 (641)
T ss_pred             CcccceEEe------cCCCcEEEEecCC--------chhheeEEeeccCCCcccCceeeecCCCcchhhhcc-cCC--ce
Confidence            988887776      3589999999965        222110000011111113456789999999977554 345  45


Q ss_pred             EEEECCC--CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcc
Q 039497          463 FVLDAVN--GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD  540 (642)
Q Consensus       463 ~~~d~~~--g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  540 (642)
                      -+|+..+  -...-.++.-......+.+++||+||++|+-.+.++.        |.+||+..-+.......+...     
T Consensus       342 Q~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t--------LKvWDLrq~kkpL~~~tgL~t-----  408 (641)
T KOG0772|consen  342 QIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT--------LKVWDLRQFKKPLNVRTGLPT-----  408 (641)
T ss_pred             eeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc--------eeeeeccccccchhhhcCCCc-----
Confidence            5555421  1110001111222336788999999999998887765        999999865544433333322     


Q ss_pred             cccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecC-CceEEeec
Q 039497          541 RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPG-NQLDLGKL  618 (642)
Q Consensus       541 ~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~d-g~~~~~~~  618 (642)
                      +..-.+..||||.+.|+....-....           ..+.|+.++.-+-+ +..|-.....+....|+|- +|.++++.
T Consensus       409 ~~~~tdc~FSPd~kli~TGtS~~~~~-----------~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg  477 (641)
T KOG0772|consen  409 PFPGTDCCFSPDDKLILTGTSAPNGM-----------TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG  477 (641)
T ss_pred             cCCCCccccCCCceEEEecccccCCC-----------CCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence            11336889999999777665433221           23479998866543 4445445566678899997 67778777


Q ss_pred             CCC
Q 039497          619 RLE  621 (642)
Q Consensus       619 ~~~  621 (642)
                      +.+
T Consensus       478 dG~  480 (641)
T KOG0772|consen  478 DGT  480 (641)
T ss_pred             CCc
Confidence            643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.44  E-value=5.7e-11  Score=111.77  Aligned_cols=308  Identities=11%  Similarity=0.070  Sum_probs=201.2

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe--------ecCCCCcccCCeecCCCCEEEEEEeecCCCC
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL--------TLNPNFHHYNPFVSANSEFIGYHRFRGESTE  307 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~--------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~  307 (642)
                      ..+..+...++..+++|+..+++.     |+.....++|+.        .+++...+....||.||..|+.--+.+.   
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aT-----GGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~---  129 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVAT-----GGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGK---  129 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEe-----cCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCcc---
Confidence            445556667788888897776555     444556778888        4566777888899999999998766665   


Q ss_pred             CCcccceEeeccCCCceeEEe-ee-CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecC
Q 039497          308 GQSTIPHLEPVASPVKELRML-RL-NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPT  383 (642)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spd  383 (642)
                         ..+|....+.  ....+. .. ...-+.|+|-+..|++.   .....+|++.+..+...++..  ......-.|.||
T Consensus       130 ---v~v~~~stg~--~~~~~~~e~~dieWl~WHp~a~illAG---~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd  201 (399)
T KOG0296|consen  130 ---VLVFKVSTGG--EQWKLDQEVEDIEWLKWHPRAHILLAG---STDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD  201 (399)
T ss_pred             ---EEEEEcccCc--eEEEeecccCceEEEEecccccEEEee---cCCCcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence               3333333222  222221 11 11346789988766554   345789999998865555555  445667789999


Q ss_pred             CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEE
Q 039497          384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLF  463 (642)
Q Consensus       384 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~  463 (642)
                      |++++....       ++.+.+|+..+        +.     ....+...+......+.++-++. +++..++++  ..+
T Consensus       202 GKr~~tgy~-------dgti~~Wn~kt--------g~-----p~~~~~~~e~~~~~~~~~~~~~~-~~~~g~~e~--~~~  258 (399)
T KOG0296|consen  202 GKRILTGYD-------DGTIIVWNPKT--------GQ-----PLHKITQAEGLELPCISLNLAGS-TLTKGNSEG--VAC  258 (399)
T ss_pred             CceEEEEec-------CceEEEEecCC--------Cc-----eeEEecccccCcCCccccccccc-eeEeccCCc--cEE
Confidence            999988763       78999999876        33     44445433323344456666664 445555443  566


Q ss_pred             EEECCCCccccceeeCCCC---------C---CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          464 VLDAVNGEFNGDIRQLTDG---------P---WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       464 ~~d~~~g~~~~~~~~l~~~---------~---~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                      ..+..+|+.    ......         .   ..+..+.||.+=...+..+.++.        |.+||+....+|.+...
T Consensus       259 ~~~~~sgKV----v~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~--------i~iyD~a~~~~R~~c~h  326 (399)
T KOG0296|consen  259 GVNNGSGKV----VNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGT--------IAIYDLAASTLRHICEH  326 (399)
T ss_pred             EEccccceE----EEecCCCCccccccchhhhhhhhhcccccccchhhcccccce--------EEEEecccchhheeccC
Confidence            677766763    332221         1   12333455655555666666664        99999998888877642


Q ss_pred             CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecC
Q 039497          532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPG  610 (642)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~d  610 (642)
                        +.       .+..+.|-+ -.+|+....++                 .|+.||..+|+ +..++.+...+...+++|+
T Consensus       327 --e~-------~V~~l~w~~-t~~l~t~c~~g-----------------~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~  379 (399)
T KOG0296|consen  327 --ED-------GVTKLKWLN-TDYLLTACANG-----------------KVRQWDARTGQLKFTYTGHQMGILDFALSPQ  379 (399)
T ss_pred             --CC-------ceEEEEEcC-cchheeeccCc-----------------eEEeeeccccceEEEEecCchheeEEEEcCC
Confidence              32       467889988 55666555443                 89999988877 5577778888899999999


Q ss_pred             CceEEeecCCC
Q 039497          611 NQLDLGKLRLE  621 (642)
Q Consensus       611 g~~~~~~~~~~  621 (642)
                      .+++++....+
T Consensus       380 ~~~vvT~s~D~  390 (399)
T KOG0296|consen  380 KRLVVTVSDDN  390 (399)
T ss_pred             CcEEEEecCCC
Confidence            99998865443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.41  E-value=1.1e-11  Score=127.75  Aligned_cols=187  Identities=14%  Similarity=0.154  Sum_probs=142.6

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      .+.+....|+||.++|+-++.       +..++||.+.+  .      .     .......+. ..++.+.|+|-|=|++
T Consensus       451 ~GPVyg~sFsPd~rfLlScSE-------D~svRLWsl~t--~------s-----~~V~y~GH~-~PVwdV~F~P~GyYFa  509 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRFLLSCSE-------DSSVRLWSLDT--W------S-----CLVIYKGHL-APVWDVQFAPRGYYFA  509 (707)
T ss_pred             CCceeeeeecccccceeeccC-------Ccceeeeeccc--c------e-----eEEEecCCC-cceeeEEecCCceEEE
Confidence            566888999999999988873       78999999977  2      1     233334343 6788899999997776


Q ss_pred             EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                      .++ .+....||..|  .-..   ++.+..+...+..+.|+|+..+++..+.+..        +.+||+.+|...++.. 
T Consensus       510 tas-~D~tArLWs~d--~~~P---lRifaghlsDV~cv~FHPNs~Y~aTGSsD~t--------VRlWDv~~G~~VRiF~-  574 (707)
T KOG0263|consen  510 TAS-HDQTARLWSTD--HNKP---LRIFAGHLSDVDCVSFHPNSNYVATGSSDRT--------VRLWDVSTGNSVRIFT-  574 (707)
T ss_pred             ecC-CCceeeeeecc--cCCc---hhhhcccccccceEEECCcccccccCCCCce--------EEEEEcCCCcEEEEec-
Confidence            664 33334555544  3343   4556666667777999999999988877654        8999999998888775 


Q ss_pred             CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecC
Q 039497          532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPG  610 (642)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~d  610 (642)
                      ++.+       .+.++.|||+|++|+..+.++                 .|.+||+.++. +.++-.+.+.+.++.||.|
T Consensus       575 GH~~-------~V~al~~Sp~Gr~LaSg~ed~-----------------~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d  630 (707)
T KOG0263|consen  575 GHKG-------PVTALAFSPCGRYLASGDEDG-----------------LIKIWDLANGSLVKQLKGHTGTIYSLSFSRD  630 (707)
T ss_pred             CCCC-------ceEEEEEcCCCceEeecccCC-----------------cEEEEEcCCCcchhhhhcccCceeEEEEecC
Confidence            5666       789999999999998877664                 78888998865 6677777778899999999


Q ss_pred             CceEEeec
Q 039497          611 NQLDLGKL  618 (642)
Q Consensus       611 g~~~~~~~  618 (642)
                      |..|++..
T Consensus       631 g~vLasgg  638 (707)
T KOG0263|consen  631 GNVLASGG  638 (707)
T ss_pred             CCEEEecC
Confidence            99998753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.41  E-value=3.5e-09  Score=104.82  Aligned_cols=293  Identities=13%  Similarity=0.154  Sum_probs=148.7

Q ss_pred             eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEe-----ccCCceeeEEEEEeecCCCCcccCCee
Q 039497          215 WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATR-----RKNRNFRHIEIYDLTLNPNFHHYNPFV  289 (642)
Q Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~-----~~~~~~~~i~~~d~~~~~~~~~~~~~~  289 (642)
                      -+|+.+|.++.        +.......+..... .+||||+.|+++..     ..|.....|.++|..+....       
T Consensus        27 ~~v~ViD~~~~--------~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~-------   90 (352)
T TIGR02658        27 TQVYTIDGEAG--------RVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI-------   90 (352)
T ss_pred             ceEEEEECCCC--------EEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE-------
Confidence            48889998887        33333333333333 49999999998765     11333446777776332100       


Q ss_pred             cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE
Q 039497          290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL  369 (642)
Q Consensus       290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l  369 (642)
                                              ....+..+++.  +.........+||||++|++.. .+....+-++|+.+++....
T Consensus        91 ------------------------~~i~~p~~p~~--~~~~~~~~~~ls~dgk~l~V~n-~~p~~~V~VvD~~~~kvv~e  143 (352)
T TIGR02658        91 ------------------------ADIELPEGPRF--LVGTYPWMTSLTPDNKTLLFYQ-FSPSPAVGVVDLEGKAFVRM  143 (352)
T ss_pred             ------------------------eEEccCCCchh--hccCccceEEECCCCCEEEEec-CCCCCEEEEEECCCCcEEEE
Confidence                                    00011001000  0111113568999999776543 24467899999998876553


Q ss_pred             eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc-CCCCccCcEECC-CC
Q 039497          370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSP-DG  447 (642)
Q Consensus       370 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~Sp-Dg  447 (642)
                      ..-.....+.-+++.+..+.+.        ++....+.++.  +      |+. ......+... .......+.+++ ||
T Consensus       144 i~vp~~~~vy~t~e~~~~~~~~--------Dg~~~~v~~d~--~------g~~-~~~~~~vf~~~~~~v~~rP~~~~~dg  206 (352)
T TIGR02658       144 MDVPDCYHIFPTANDTFFMHCR--------DGSLAKVGYGT--K------GNP-KIKPTEVFHPEDEYLINHPAYSNKSG  206 (352)
T ss_pred             EeCCCCcEEEEecCCccEEEee--------cCceEEEEecC--C------Cce-EEeeeeeecCCccccccCCceEcCCC
Confidence            3311111111111111111121        22222222222  1      110 0011122111 101223446677 88


Q ss_pred             CeEEEEeCCCCceeEEEEECCCCccc--cceeeCCCC-------CCcccceeEecCCCEEEEEecCCCCC--CCCceeEE
Q 039497          448 KFLVFRSGRSGHKNLFVLDAVNGEFN--GDIRQLTDG-------PWIDTMPSWSPKGDLIAFSSNRHNPD--NVEAFSLY  516 (642)
Q Consensus       448 ~~l~~~~~~~g~~~l~~~d~~~g~~~--~~~~~l~~~-------~~~~~~~~~spdG~~l~~~~~~~~~~--~~~~~~l~  516 (642)
                      ++++.+..    ..|+.+|+.+.+..  .....++..       ++....++++|||+++++.......+  .....+|+
T Consensus       207 ~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~  282 (352)
T TIGR02658       207 RLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF  282 (352)
T ss_pred             cEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence            76655543    48999996543320  001112211       11122379999999999854322100  11346899


Q ss_pred             EEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeec
Q 039497          517 VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRL  595 (642)
Q Consensus       517 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l  595 (642)
                      ++|..+++...-...+.         .+..+++||||+.++|..+...               ..|.++|..+++ ++.+
T Consensus       283 ViD~~t~kvi~~i~vG~---------~~~~iavS~Dgkp~lyvtn~~s---------------~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       283 VVDAKTGKRLRKIELGH---------EIDSINVSQDAKPLLYALSTGD---------------KTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEECCCCeEEEEEeCCC---------ceeeEEECCCCCeEEEEeCCCC---------------CcEEEEECcCCeEEeee
Confidence            99998877655443332         4578999999994445554322               279999988765 4444

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.40  E-value=2.2e-09  Score=111.40  Aligned_cols=367  Identities=11%  Similarity=0.027  Sum_probs=207.0

Q ss_pred             ceEEEEccCCceEeccc-CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cC-C--Cc
Q 039497          121 ALYSTDLKASKFTRLTP-YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ER-G--GW  195 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~-~--~~  195 (642)
                      +|.+.++..++...-.. ..+.....+|.-||..+..+...           .+.+.+||++..+..-++. .+ +  ..
T Consensus       225 ~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~-----------~G~m~~wDLe~kkl~~v~~nah~~sv~~  293 (910)
T KOG1539|consen  225 TVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS-----------NGDMAFWDLEKKKLINVTRNAHYGSVTG  293 (910)
T ss_pred             eEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC-----------CceEEEEEcCCCeeeeeeeccccCCccc
Confidence            45555666554432222 23556778999999998766533           3479999999987666654 22 2  24


Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceee-CCCCCccccceee-cCCcEEEEEEeccCCceeeEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV-TPPGVHCFTPAAF-HDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~S-pdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      ..+.|...+++++ ..|....+|..|...|.+      +..+. .++......+.+. ..|..|..+..++     .++.
T Consensus       294 ~~fl~~epVl~ta-~~DnSlk~~vfD~~dg~p------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr-----t~r~  361 (910)
T KOG1539|consen  294 ATFLPGEPVLVTA-GADNSLKVWVFDSGDGVP------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDR-----TLRS  361 (910)
T ss_pred             ceecCCCceEeec-cCCCceeEEEeeCCCCcc------hheeeccCCCCCchheeeeccCcEEEEecccCc-----chhh
Confidence            4788887888887 677888999999776632      22222 2223334445553 5666666654433     3444


Q ss_pred             EEee-------cCC--------CCccc------C---CeecCCCCEE-----EEEEeecCCCCCCcccceEeeccCCCce
Q 039497          274 YDLT-------LNP--------NFHHY------N---PFVSANSEFI-----GYHRFRGESTEGQSTIPHLEPVASPVKE  324 (642)
Q Consensus       274 ~d~~-------~~~--------~~~~~------~---~~~spDg~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (642)
                      +++.       ...        .....      .   ..+.-++.+.     ++..+.++..    ...|-...+.. .+
T Consensus       362 fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~----~~tW~~~n~~~-G~  436 (910)
T KOG1539|consen  362 FSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS----AYTWNFRNKTS-GR  436 (910)
T ss_pred             hhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce----EEEEeccCccc-cc
Confidence            4440       000        00000      0   0000000000     0000111100    01111110000 00


Q ss_pred             eEEe-------eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEc
Q 039497          325 LRML-------RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTST  392 (642)
Q Consensus       325 ~~~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~  392 (642)
                      ..+.       .......+.|+-|++. |++  ...+.|-++|+.+|-.+.-..     ...+..++..--++.++.+. 
T Consensus       437 ~~L~~~~~~~~~~~~~av~vs~CGNF~-~IG--~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-  512 (910)
T KOG1539|consen  437 HVLDPKRFKKDDINATAVCVSFCGNFV-FIG--YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-  512 (910)
T ss_pred             EEecCccccccCcceEEEEEeccCceE-EEe--ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-
Confidence            0010       1112356778889854 443  235788899999887655431     44566666554455455443 


Q ss_pred             CCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497          393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       393 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~  472 (642)
                            -++-+.+|+...  .        .   -...+.-+.  ....+..+.....++..-   +...|.++|..+-+.
T Consensus       513 ------~~Gilkfw~f~~--k--------~---l~~~l~l~~--~~~~iv~hr~s~l~a~~~---ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  513 ------ADGILKFWDFKK--K--------V---LKKSLRLGS--SITGIVYHRVSDLLAIAL---DDFSIRVVDVVTRKV  568 (910)
T ss_pred             ------CcceEEEEecCC--c--------c---eeeeeccCC--Ccceeeeeehhhhhhhhc---CceeEEEEEchhhhh
Confidence                  367888888854  1        0   112221111  233344444444444333   455899999988776


Q ss_pred             ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC
Q 039497          473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD  552 (642)
Q Consensus       473 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D  552 (642)
                         ++.+..+...++...|||||+||+.++.+..        |.+||+-++..--...  ...       ....+.|||.
T Consensus       569 ---vR~f~gh~nritd~~FS~DgrWlisasmD~t--------Ir~wDlpt~~lID~~~--vd~-------~~~sls~SPn  628 (910)
T KOG1539|consen  569 ---VREFWGHGNRITDMTFSPDGRWLISASMDST--------IRTWDLPTGTLIDGLL--VDS-------PCTSLSFSPN  628 (910)
T ss_pred             ---hHHhhccccceeeeEeCCCCcEEEEeecCCc--------EEEEeccCcceeeeEe--cCC-------cceeeEECCC
Confidence               6777777778899999999999999998876        9999998876543222  222       4578999999


Q ss_pred             CCEEEEEEecC
Q 039497          553 GEWLLFTANLG  563 (642)
Q Consensus       553 g~~l~~~~~~~  563 (642)
                      |.+|+.+..+.
T Consensus       629 gD~LAT~Hvd~  639 (910)
T KOG1539|consen  629 GDFLATVHVDQ  639 (910)
T ss_pred             CCEEEEEEecC
Confidence            99999888664

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.39  E-value=5.6e-11  Score=126.89  Aligned_cols=243  Identities=18%  Similarity=0.169  Sum_probs=149.3

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEEC------CC--CC--------eeEEee--cCCceeeeeecCCCEEEEEEcCC
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKS------DG--SK--------RWTLIK--DRTAFYNSWSPTEKHVIYTSTGP  394 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~------~~--~~--------~~~l~~--~~~~~~~~~spdg~~l~~~~~~~  394 (642)
                      ....|||||+++|..++ +....||-+..      -+  +.        ...+..  ...+.++.|+||+.+|+-++.  
T Consensus        73 ~CVR~S~dG~~lAsGSD-D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~--  149 (942)
T KOG0973|consen   73 NCVRFSPDGSYLASGSD-DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL--  149 (942)
T ss_pred             eEEEECCCCCeEeeccC-cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc--
Confidence            46789999999999765 33334455541      11  11        111111  567889999999999998875  


Q ss_pred             CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccc
Q 039497          395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG  474 (642)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~  474 (642)
                           ++.+.||+...        -.     ..+.+..+. ..+..++|-|=|+||+..+++   ..|.+|.+.+-..  
T Consensus       150 -----DnsViiwn~~t--------F~-----~~~vl~~H~-s~VKGvs~DP~Gky~ASqsdD---rtikvwrt~dw~i--  205 (942)
T KOG0973|consen  150 -----DNSVIIWNAKT--------FE-----LLKVLRGHQ-SLVKGVSWDPIGKYFASQSDD---RTLKVWRTSDWGI--  205 (942)
T ss_pred             -----cceEEEEcccc--------ce-----eeeeeeccc-ccccceEECCccCeeeeecCC---ceEEEEEccccee--
Confidence                 78899999865        11     566777776 888899999999999988743   4677777544222  


Q ss_pred             ceeeCCCCC------CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceE
Q 039497          475 DIRQLTDGP------WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC  548 (642)
Q Consensus       475 ~~~~l~~~~------~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  548 (642)
                       .+.++..-      .....+.|||||++|+....-++    ....+-+++.++=+. ....-++..       .+..++
T Consensus       206 -~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~----~~~~~~IieR~tWk~-~~~LvGH~~-------p~evvr  272 (942)
T KOG0973|consen  206 -EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG----GKSTIAIIERGTWKV-DKDLVGHSA-------PVEVVR  272 (942)
T ss_pred             -eEeeccchhhCCCcceeeecccCCCcCeecchhhccC----CcceeEEEecCCcee-eeeeecCCC-------ceEEEE
Confidence             34454321      23455799999999998876554    455666666533221 111224444       344555


Q ss_pred             EcC--------CCCE--------EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC--CCCCCCcEEecC
Q 039497          549 FSA--------DGEW--------LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN--GYENGTPAWHPG  610 (642)
Q Consensus       549 ~S~--------Dg~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~--~~~~~~~~~s~d  610 (642)
                      |+|        +|..        ++.+....                ..|-+|......+..+...  .-.+.+++||||
T Consensus       273 FnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD----------------rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspd  336 (942)
T KOG0973|consen  273 FNPKLFERNNKNGTSTQPNCYYCIAAVGSQD----------------RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPD  336 (942)
T ss_pred             eChHHhccccccCCccCCCcceEEEEEecCC----------------ccEEEEecCCCCchhhhhhhhcCceeeeeEcCC
Confidence            544        2211        33333222                2677776655444433332  345689999999


Q ss_pred             CceEEeecCCCcccccceeeeeccc
Q 039497          611 NQLDLGKLRLEDDIGDKLRGQFDEP  635 (642)
Q Consensus       611 g~~~~~~~~~~~~~~~~~~~~~~~~  635 (642)
                      |..|+.+...|    .+..-.|+|.
T Consensus       337 G~~LfacS~DG----tV~~i~Fee~  357 (942)
T KOG0973|consen  337 GFSLFACSLDG----TVALIHFEEK  357 (942)
T ss_pred             CCeEEEEecCC----eEEEEEcchH
Confidence            98887776555    2344556554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.39  E-value=7.3e-11  Score=109.45  Aligned_cols=356  Identities=15%  Similarity=0.143  Sum_probs=197.2

Q ss_pred             ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec-CCC--cce
Q 039497          121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-RGG--WPT  197 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~~--~~~  197 (642)
                      .+.+.+..+-+..+|...-.......|+.|.-+|.-+....           .-|.+|++...+..--..+ ..+  ...
T Consensus        30 rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~-----------~~vqvwsl~Qpew~ckIdeg~agls~~~   98 (447)
T KOG4497|consen   30 RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKD-----------PKVQVWSLVQPEWYCKIDEGQAGLSSIS   98 (447)
T ss_pred             EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeecc-----------ceEEEEEeecceeEEEeccCCCcceeee
Confidence            46666777666666654433456678999999987554332           2588999988875544332 222  569


Q ss_pred             EeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEE---EE
Q 039497          198 WSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE---IY  274 (642)
Q Consensus       198 wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~---~~  274 (642)
                      |||||+.+...+..+-...+|.++...+          .-+..+...+...+|.|||++.+...++.-...-.|.   -|
T Consensus        99 WSPdgrhiL~tseF~lriTVWSL~t~~~----------~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W  168 (447)
T KOG4497|consen   99 WSPDGRHILLTSEFDLRITVWSLNTQKG----------YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW  168 (447)
T ss_pred             ECCCcceEeeeecceeEEEEEEecccee----------EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence            9999965544435556667777765544          4455555556678999999999998766411110110   01


Q ss_pred             Ee---ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC
Q 039497          275 DL---TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE  351 (642)
Q Consensus       275 d~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  351 (642)
                      .+   ............|||||..|+....--+.     .+....   .        ........|||-++.|+..+.. 
T Consensus       169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley-----kv~aYe---~--------~lG~k~v~wsP~~qflavGsyD-  231 (447)
T KOG4497|consen  169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY-----KVYAYE---R--------GLGLKFVEWSPCNQFLAVGSYD-  231 (447)
T ss_pred             HHHHhcCCCcccccCceECCCCcEEEEecchhhh-----eeeeee---e--------ccceeEEEeccccceEEeeccc-
Confidence            11   01112233467899999999886321110     000000   0        0111245899999998886552 


Q ss_pred             CceeEEEEECCCCCe----eEEee-c----------------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          352 LNAGIKIAKSDGSKR----WTLIK-D----------------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       352 ~~~~l~~~d~~~~~~----~~l~~-~----------------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                        ..+.++|--+-+.    -.+.. .                -....+.|.|.                +....+|....
T Consensus       232 --~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~----------------~~~a~~~~~se  293 (447)
T KOG4497|consen  232 --QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT----------------DLEAHIWEESE  293 (447)
T ss_pred             --hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC----------------ccccCccccch
Confidence              2222222111000    00000 0                00111122221                11111111110


Q ss_pred             ecCCCCCCCCCc---ccc---ceEE---ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497          411 QLDPSDDNNREE---IPC---DVKI---LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD  481 (642)
Q Consensus       411 ~~~~~~~~~~~~---~~~---~~~~---l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~  481 (642)
                              ..-+   .+-   +.++   ..... -.+..++||+|..+++... +.-...||+||++.-+.    ..+..
T Consensus       294 --------~~YE~~~~pv~~~~lkp~tD~pnPk-~g~g~lafs~Ds~y~aTrn-d~~PnalW~Wdlq~l~l----~avLi  359 (447)
T KOG4497|consen  294 --------TIYEQQMTPVKVHKLKPPTDFPNPK-CGAGKLAFSCDSTYAATRN-DKYPNALWLWDLQNLKL----HAVLI  359 (447)
T ss_pred             --------hhhhhhhcceeeecccCCCCCCCcc-cccceeeecCCceEEeeec-CCCCceEEEEechhhhh----hhhhh
Confidence                    0000   000   1111   11222 3456789999998877554 34456899999997663    44333


Q ss_pred             CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497          482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       482 ~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                      ....+..+.|.|.-.+|+.-...        .+||.|.+.+.....+...+.         .+..+.|.-+|..|+..+.
T Consensus       360 Qk~piraf~WdP~~prL~vctg~--------srLY~W~psg~~~V~vP~~GF---------~i~~l~W~~~g~~i~l~~k  422 (447)
T KOG4497|consen  360 QKHPIRAFEWDPGRPRLVVCTGK--------SRLYFWAPSGPRVVGVPKKGF---------NIQKLQWLQPGEFIVLCGK  422 (447)
T ss_pred             hccceeEEEeCCCCceEEEEcCC--------ceEEEEcCCCceEEecCCCCc---------eeeeEEecCCCcEEEEEcC
Confidence            33456778999988888777644        349999998855444444332         4678999999999988876


Q ss_pred             cC
Q 039497          562 LG  563 (642)
Q Consensus       562 ~~  563 (642)
                      +.
T Consensus       423 Da  424 (447)
T KOG4497|consen  423 DA  424 (447)
T ss_pred             Cc
Confidence            53

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.37  E-value=3.2e-12  Score=121.61  Aligned_cols=223  Identities=11%  Similarity=0.080  Sum_probs=156.1

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      +...||++|.+++-..   ...-|-+++..-.....+..  ...+..++|||+..+++.++       +++.+.||+..-
T Consensus       142 r~m~ws~~g~wmiSgD---~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~S-------dDg~ikiWdf~~  211 (464)
T KOG0284|consen  142 RTMKWSHNGTWMISGD---KGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS-------DDGTIKIWDFRM  211 (464)
T ss_pred             eeEEEccCCCEEEEcC---CCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEec-------CCCeEEEEeccC
Confidence            4568999999887643   23445555554443332222  46788999999888888776       489999999865


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                              ..     ..+.|..+. ..+..+.|.|.-..|+ ...++.  -|-+||..+|+.   +..|..+...+....
T Consensus       212 --------~k-----ee~vL~GHg-wdVksvdWHP~kgLia-sgskDn--lVKlWDprSg~c---l~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  212 --------PK-----EERVLRGHG-WDVKSVDWHPTKGLIA-SGSKDN--LVKLWDPRSGSC---LATLHGHKNTVLAVK  271 (464)
T ss_pred             --------Cc-----hhheeccCC-CCcceeccCCccceeE-EccCCc--eeEeecCCCcch---hhhhhhccceEEEEE
Confidence                    22     556676665 7889999999755444 444433  788999999987   677777878888999


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      |+|+|++|+..+.+..        +.++|+.+.+.-.... ++..       .+..+.|+|=..-|+.+....+      
T Consensus       272 f~~n~N~Llt~skD~~--------~kv~DiR~mkEl~~~r-~Hkk-------dv~~~~WhP~~~~lftsgg~Dg------  329 (464)
T KOG0284|consen  272 FNPNGNWLLTGSKDQS--------CKVFDIRTMKELFTYR-GHKK-------DVTSLTWHPLNESLFTSGGSDG------  329 (464)
T ss_pred             EcCCCCeeEEccCCce--------EEEEehhHhHHHHHhh-cchh-------hheeeccccccccceeeccCCC------
Confidence            9999999998887754        8899987433322221 3333       5678999999888877765443      


Q ss_pred             CCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEecCCceEEee
Q 039497          571 SWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~dg~~~~~~  617 (642)
                                .|+.+.+...++....  .+...+.+++|+|=|-.|++.
T Consensus       330 ----------svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tg  368 (464)
T KOG0284|consen  330 ----------SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATG  368 (464)
T ss_pred             ----------ceEEEeccccccccCCCcccccceeeeeccccceeEeec
Confidence                      5555555533333222  356778899999999888775

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.36  E-value=3.3e-09  Score=107.98  Aligned_cols=524  Identities=13%  Similarity=0.100  Sum_probs=251.5

Q ss_pred             CCcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEE--EccCCCcceEEEcCCCC
Q 039497            2 EPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFI--SERSGSPRIYQTRPGSS   79 (642)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~--~~~~g~~~l~~~~~~g~   79 (642)
                      .+++.++|.      .+-.|-+.+-.-    ....+.|-+|.+.+-..++- |+.+..+|.  +..||...+|......-
T Consensus        23 ~~~~~vafG------a~~~Iav~dp~k----~~i~t~l~GH~a~VnC~~~l-~~s~~~a~~vsG~sD~~v~lW~l~~~~~   91 (764)
T KOG1063|consen   23 GPGGLVAFG------AGPAIAVADPEK----ILIVTTLDGHVARVNCVHWL-PTSEIVAEMVSGDSDGRVILWKLRDEYL   91 (764)
T ss_pred             cccceEEec------CCceEEEeCccc----ceeEEeccCCccceEEEEEc-ccccccceEEEccCCCcEEEEEEeehhe
Confidence            477888888      555565543322    03456677899999999999 999866653  34456777898742221


Q ss_pred             cccccCCCCCCccccccccCCCE-EEEEEeccCCCcccccccceEEEEccCCc-----eEecccCCCccCCceeCCCCcE
Q 039497           80 KTELLPSIPCSLFHDRPVARNNK-LFFISAHEQPDQIFKSWSALYSTDLKASK-----FTRLTPYGVVDYSPSVSYSGKF  153 (642)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~lt~~~~~~~~~~~SPDG~~  153 (642)
                        ..+.+.+...- .-..+.... +.+....       +....+|  +.+..+     ..+.........+.++.|+-+.
T Consensus        92 --~~i~~~~g~~~-~~~cv~a~~~~~~~~~a-------d~~v~vw--~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~  159 (764)
T KOG1063|consen   92 --IKIYTIQGHCK-ECVCVVARSSVMTCKAA-------DGTVSVW--DKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKT  159 (764)
T ss_pred             --EEEEeecCcce-eEEEEEeeeeEEEeecc-------CceEEEe--ecCCCceeeehheehhhhhHhhHHHhhhccCCc
Confidence              11111111000 001111221 2221111       1111344  433333     2233333344566677775555


Q ss_pred             EEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC--Cc---ceEeeCC--eEEEEEecCCCceEEEEEecCCCc
Q 039497          154 IAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GW---PTWSGDS--TIYFHRQADDGWWSIFRVSFPENL  226 (642)
Q Consensus       154 la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~---~~wspdg--~~~~~~~~~~g~~~l~~~~~~~~~  226 (642)
                      ++.+....          ...|.++.-..++.+++..-.+  .|   ++|..-+  .+++.+...|-..+||++-+.+..
T Consensus       160 ~lla~Ggs----------~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~  229 (764)
T KOG1063|consen  160 FLLACGGS----------KFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE  229 (764)
T ss_pred             EEEEecCc----------ceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc
Confidence            44443222          2344444444444555554333  23   4666444  455555466777899998877642


Q ss_pred             ccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCC
Q 039497          227 EFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGEST  306 (642)
Q Consensus       227 ~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~  306 (642)
                              . ......    ....-+++...+. . ..  -...|.+--+..++...+....|.|++..|+..+.+..  
T Consensus       230 --------~-~~~~e~----~~t~~~~~~~f~~-l-~~--i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDks--  290 (764)
T KOG1063|consen  230 --------D-SNERED----SLTTLSNLPVFMI-L-EE--IQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKS--  290 (764)
T ss_pred             --------c-cccccc----ccccccCCceeee-e-ee--EEEEEehhhhhcCcccceEEEEEccchhhheecccCcc--
Confidence                    1 111000    0111112111111 0 00  00122222335567777778889999977777766555  


Q ss_pred             CCCcccceEeeccCC--CceeEEeeeCC-----CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCc
Q 039497          307 EGQSTIPHLEPVASP--VKELRMLRLNG-----SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTA  375 (642)
Q Consensus       307 ~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~  375 (642)
                          .++|....+..  ...+.+....+     ....|+|+++.|+-.+. .+.-++|. +.+.....+...    -..+
T Consensus       291 ----miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~-~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V  364 (764)
T KOG1063|consen  291 ----MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR-TGGFHLWK-TKDKTFWTQEPVISGHVDGV  364 (764)
T ss_pred             ----eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc-cCcEEEEe-ccCccceeeccccccccccc
Confidence                34443332211  11222222221     23579999986665443 55566666 233333233222    4568


Q ss_pred             eeeeeecCCCEEEEEEcCC---Cccc----------CCCeEEEEEEEee---c-CCCCCCCCCccccceEEccccCCC--
Q 039497          376 FYNSWSPTEKHVIYTSTGP---IFQS----------ERATVQIARVSFQ---L-DPSDDNNREEIPCDVKILTKEETG--  436 (642)
Q Consensus       376 ~~~~~spdg~~l~~~~~~~---~~~~----------~~~~~~l~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~--  436 (642)
                      .++.|+|.|++|+.++...   +|..          .+.+++=|++.-.   . +..+..+..+   ++.+....+..  
T Consensus       365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE---KVlRvF~aPk~fv  441 (764)
T KOG1063|consen  365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE---KVLRVFEAPKSFV  441 (764)
T ss_pred             eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc---eeeeeecCcHHHH
Confidence            8999999999998877531   0100          1122222222110   0 0000001111   11111111100  


Q ss_pred             ---------CccCcEECCCCCeEEE--EeCCCCceeEEEEECCCCcc-------------------c-----------cc
Q 039497          437 ---------NNAFPSCSPDGKFLVF--RSGRSGHKNLFVLDAVNGEF-------------------N-----------GD  475 (642)
Q Consensus       437 ---------~~~~~~~SpDg~~l~~--~~~~~g~~~l~~~d~~~g~~-------------------~-----------~~  475 (642)
                               ......-.|+|--+=.  .+++    .++.-+..+|..                   +           -+
T Consensus       442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnK----a~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE  517 (764)
T KOG1063|consen  442 KSLMAICGKCFKGSDELPDGANVPALGLSNK----AFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE  517 (764)
T ss_pred             HHHHHHhCccccCchhcccccccccccccCC----CCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence                     0001112233221111  1111    111111112211                   0           01


Q ss_pred             eeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE-eeecCCCCCCCcccccccceEEcCCCC
Q 039497          476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR-IHVAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       476 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      ++.|..+...+..++.||+|+.|+........   ....|++|+..+=.... |.  .+.-       -++.+.|||||+
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~---ehAvI~lw~t~~W~~~~~L~--~HsL-------TVT~l~FSpdg~  585 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLK---EHAVIRLWNTANWLQVQELE--GHSL-------TVTRLAFSPDGR  585 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCc---cceEEEEEeccchhhhheec--ccce-------EEEEEEECCCCc
Confidence            23334445566778999999988877665533   67789999876533332 32  2222       468899999999


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee---eccCCCCCCCCcEEecCCceEEee
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR---RLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      +|+..+.+-.               ..||..-.+-..-.   .+..+...+.+..|+||+.+|++.
T Consensus       586 ~LLsvsRDRt---------------~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTa  636 (764)
T KOG1063|consen  586 YLLSVSRDRT---------------VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATA  636 (764)
T ss_pred             EEEEeecCce---------------EEeeeeecccchhhhhccccccceEEEEcccCcccceeEEe
Confidence            9998886642               25665422111111   244455666789999999998875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.36  E-value=1.8e-10  Score=123.10  Aligned_cols=299  Identities=18%  Similarity=0.070  Sum_probs=168.5

Q ss_pred             eEeeCCeEEEEEe-cCCCceEEEEEecCCCcccccC---CccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497          197 TWSGDSTIYFHRQ-ADDGWWSIFRVSFPENLEFLGF---PIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE  272 (642)
Q Consensus       197 ~wspdg~~~~~~~-~~~g~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~  272 (642)
                      .-+|||..+.+.. ..+|...||..+.-.......+   +.....+..+...+..+.|||||++||+     |+..+-+.
T Consensus        20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs-----GSDD~~v~   94 (942)
T KOG0973|consen   20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS-----GSDDRLVM   94 (942)
T ss_pred             EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee-----ccCcceEE
Confidence            4567776666651 1344445676554332110000   0122334445557778889999999999     44445777


Q ss_pred             EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497          273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL  352 (642)
Q Consensus       273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  352 (642)
                      +|+....   ......+|-.|..              .+..|-..     ..+.-.........|+||+.+++..+.   
T Consensus        95 iW~~~~~---~~~~~fgs~g~~~--------------~vE~wk~~-----~~l~~H~~DV~Dv~Wsp~~~~lvS~s~---  149 (942)
T KOG0973|consen   95 IWERAEI---GSGTVFGSTGGAK--------------NVESWKVV-----SILRGHDSDVLDVNWSPDDSLLVSVSL---  149 (942)
T ss_pred             Eeeeccc---CCccccccccccc--------------ccceeeEE-----EEEecCCCccceeccCCCccEEEEecc---
Confidence            7876321   1111122211110              01111111     001111122346799999998888754   


Q ss_pred             ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      .+.|.+++..+-+......  ...+-.+.|.|-|++++..+       ++..+.+|+...        -+     ..+.+
T Consensus       150 DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs-------dDrtikvwrt~d--------w~-----i~k~I  209 (942)
T KOG0973|consen  150 DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS-------DDRTLKVWRTSD--------WG-----IEKSI  209 (942)
T ss_pred             cceEEEEccccceeeeeeecccccccceEECCccCeeeeec-------CCceEEEEEccc--------ce-----eeEee
Confidence            4778888887775444443  45677899999999999886       478999999532        12     33333


Q ss_pred             cccCC-----CCccCcEECCCCCeEEEEeCC-CCceeEEEEECCCCccccceeeCCCCCCcccceeEec--------CCC
Q 039497          431 TKEET-----GNNAFPSCSPDGKFLVFRSGR-SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP--------KGD  496 (642)
Q Consensus       431 ~~~~~-----~~~~~~~~SpDg~~l~~~~~~-~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp--------dG~  496 (642)
                      +....     .....+.|||||++|+....- .+...+-+++-++-+.   -..|..+........|+|        +|.
T Consensus       210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~---~~~LvGH~~p~evvrFnP~lfe~~~~ng~  286 (942)
T KOG0973|consen  210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV---DKDLVGHSAPVEVVRFNPKLFERNNKNGT  286 (942)
T ss_pred             ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee---eeeeecCCCceEEEEeChHHhccccccCC
Confidence            33220     245568999999999876532 3444666666544432   244555555555566665        111


Q ss_pred             ---------EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          497 ---------LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       497 ---------~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                               .++..+.+.        .|-+|.....++-.+...-.+.       .+.+++|||||-.|+..+.++
T Consensus       287 ~~~~~~~y~i~AvgSqDr--------SlSVW~T~~~RPl~vi~~lf~~-------SI~DmsWspdG~~LfacS~DG  347 (942)
T KOG0973|consen  287 STQPNCYYCIAAVGSQDR--------SLSVWNTALPRPLFVIHNLFNK-------SIVDMSWSPDGFSLFACSLDG  347 (942)
T ss_pred             ccCCCcceEEEEEecCCc--------cEEEEecCCCCchhhhhhhhcC-------ceeeeeEcCCCCeEEEEecCC
Confidence                     122333332        3777775433332222222222       578999999999999999887

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.3e-09  Score=101.17  Aligned_cols=274  Identities=15%  Similarity=0.191  Sum_probs=168.0

Q ss_pred             CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497          241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS  320 (642)
Q Consensus       241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~  320 (642)
                      ....+..+.++++|..|+.+..+.     .+.+||...+.              .+-.                      
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dD-----sl~LYd~~~g~--------------~~~t----------------------   51 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDD-----SLRLYDSLSGK--------------QVKT----------------------   51 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCC-----eEEEEEcCCCc--------------eeeE----------------------
Confidence            356788888999999888855443     78888873221              1111                      


Q ss_pred             CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCccc
Q 039497          321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQS  398 (642)
Q Consensus       321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~  398 (642)
                          +....+......|....+.+.+.+. -....|..+++...+-.+...  ...+..+..+|-+..++-.+.      
T Consensus        52 ----i~skkyG~~~~~Fth~~~~~i~sSt-k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~------  120 (311)
T KOG1446|consen   52 ----INSKKYGVDLACFTHHSNTVIHSST-KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL------  120 (311)
T ss_pred             ----eecccccccEEEEecCCceEEEccC-CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEeccc------
Confidence                1111122223355444555555443 234678888887776555444  556888999998887776654      


Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497          399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ  478 (642)
Q Consensus       399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~  478 (642)
                       +..+++|++..  .      .     ..-.+...   ...-++|.|.|-.+|.+...   ..|.++|+..=.. ++-..
T Consensus       121 -D~tvrLWDlR~--~------~-----cqg~l~~~---~~pi~AfDp~GLifA~~~~~---~~IkLyD~Rs~dk-gPF~t  179 (311)
T KOG1446|consen  121 -DKTVRLWDLRV--K------K-----CQGLLNLS---GRPIAAFDPEGLIFALANGS---ELIKLYDLRSFDK-GPFTT  179 (311)
T ss_pred             -CCeEEeeEecC--C------C-----CceEEecC---CCcceeECCCCcEEEEecCC---CeEEEEEecccCC-CCcee
Confidence             78999999986  2      2     22222221   22347899999666655532   2788888753110 00122


Q ss_pred             C--C-CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCE
Q 039497          479 L--T-DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW  555 (642)
Q Consensus       479 l--~-~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~  555 (642)
                      +  . ........+.|||||++|+...+.+.        ++++|.-.|....-.......     ..-.....|+|||+.
T Consensus       180 f~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~--------~~~lDAf~G~~~~tfs~~~~~-----~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  180 FSITDNDEAEWTDLEFSPDGKSILLSTNASF--------IYLLDAFDGTVKSTFSGYPNA-----GNLPLSATFTPDSKF  246 (311)
T ss_pred             EccCCCCccceeeeEEcCCCCEEEEEeCCCc--------EEEEEccCCcEeeeEeeccCC-----CCcceeEEECCCCcE
Confidence            2  2 12334567899999999999887664        899998777643322211111     012357899999999


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceee-ccC-CCCCCCCcEEecCCceEEee
Q 039497          556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR-LTW-NGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-lt~-~~~~~~~~~~s~dg~~~~~~  617 (642)
                      |+..+.++                 .|++|++..+.... +.. ..+...-+.|.|.--.+++.
T Consensus       247 vl~gs~dg-----------------~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa  293 (311)
T KOG1446|consen  247 VLSGSDDG-----------------TIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA  293 (311)
T ss_pred             EEEecCCC-----------------cEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec
Confidence            88887765                 78999988776443 333 23445566788876555554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.35  E-value=5.9e-11  Score=109.17  Aligned_cols=164  Identities=17%  Similarity=0.138  Sum_probs=112.6

Q ss_pred             ccEEcCCCCEEEEEecC---------CCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497          334 FPSFSPDGGLIVFNHDF---------ELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT  402 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~---------~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  402 (642)
                      .+.|+|+|+.|++....         -+...||.++..+.....+..  .+.+.+++|+|+|+.++++..     .....
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g-----~~~~~   84 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG-----SMPAK   84 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc-----cCCcc
Confidence            45899999999885441         234678888877766555544  446999999999999988753     12447


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG  482 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~  482 (642)
                      +.||++..  .            ....+..   .....+.|||+|++|+.++..+....|.+||..+.+.   +.... +
T Consensus        85 v~lyd~~~--~------------~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~---i~~~~-~  143 (194)
T PF08662_consen   85 VTLYDVKG--K------------KIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK---ISTFE-H  143 (194)
T ss_pred             cEEEcCcc--c------------EeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE---eeccc-c
Confidence            88888854  2            4444432   3445689999999999988655556899999986653   22222 2


Q ss_pred             CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497          483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                       .....+.|||||++|+.......  ....+.+.+|+..|....
T Consensus       144 -~~~t~~~WsPdGr~~~ta~t~~r--~~~dng~~Iw~~~G~~l~  184 (194)
T PF08662_consen  144 -SDATDVEWSPDGRYLATATTSPR--LRVDNGFKIWSFQGRLLY  184 (194)
T ss_pred             -CcEEEEEEcCCCCEEEEEEeccc--eeccccEEEEEecCeEeE
Confidence             34577899999999998876421  113355777777665443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.34  E-value=7.9e-10  Score=101.60  Aligned_cols=279  Identities=13%  Similarity=0.083  Sum_probs=178.4

Q ss_pred             cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCcee--EeecCCC--cceEeeCCeEEEEEec
Q 039497          135 LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV--IVCERGG--WPTWSGDSTIYFHRQA  210 (642)
Q Consensus       135 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--l~~~~~~--~~~wspdg~~~~~~~~  210 (642)
                      +..+.+......|+|||.++|....+.            .|++|++-+...-.  +....+.  .+.|++|+..+++. +
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr------------~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~-g  109 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDR------------AIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSC-G  109 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcc------------eEEEEeccccccceeeeccccceeEeeeeccCCCEEEEe-c
Confidence            344555566789999999999887766            79999976654322  2222222  35999999888887 3


Q ss_pred             CCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeec
Q 039497          211 DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS  290 (642)
Q Consensus       211 ~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s  290 (642)
                      .|-  .++.+|..+|+       ...+...+..-+.....+--|-.|+...    +...++.+||+......        
T Consensus       110 tDk--~v~~wD~~tG~-------~~rk~k~h~~~vNs~~p~rrg~~lv~Sg----sdD~t~kl~D~R~k~~~--------  168 (338)
T KOG0265|consen  110 TDK--TVRGWDAETGK-------RIRKHKGHTSFVNSLDPSRRGPQLVCSG----SDDGTLKLWDIRKKEAI--------  168 (338)
T ss_pred             CCc--eEEEEecccce-------eeehhccccceeeecCccccCCeEEEec----CCCceEEEEeecccchh--------
Confidence            444  77888888885       5555555543333333333455555432    33447888887321100        


Q ss_pred             CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe
Q 039497          291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI  370 (642)
Q Consensus       291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~  370 (642)
                                                  +....+.+++     .+.|..++..+....-   .+.|-++|+..+....+.
T Consensus       169 ----------------------------~t~~~kyqlt-----Av~f~d~s~qv~sggI---dn~ikvWd~r~~d~~~~l  212 (338)
T KOG0265|consen  169 ----------------------------KTFENKYQLT-----AVGFKDTSDQVISGGI---DNDIKVWDLRKNDGLYTL  212 (338)
T ss_pred             ----------------------------hccccceeEE-----EEEecccccceeeccc---cCceeeeccccCcceEEe
Confidence                                        0000111222     4467777777665332   356777788666655555


Q ss_pred             e--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc-eEEccccC---CCCccCcEEC
Q 039497          371 K--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD-VKILTKEE---TGNNAFPSCS  444 (642)
Q Consensus       371 ~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~---~~~~~~~~~S  444 (642)
                      .  ...+..+..||+|.++.--+-       +..+++|++..- .    ++.     . ......+.   .......+||
T Consensus       213 sGh~DtIt~lsls~~gs~llsnsM-------d~tvrvwd~rp~-~----p~~-----R~v~if~g~~hnfeknlL~csws  275 (338)
T KOG0265|consen  213 SGHADTITGLSLSRYGSFLLSNSM-------DNTVRVWDVRPF-A----PSQ-----RCVKIFQGHIHNFEKNLLKCSWS  275 (338)
T ss_pred             ecccCceeeEEeccCCCccccccc-------cceEEEEEeccc-C----CCC-----ceEEEeecchhhhhhhcceeecc
Confidence            4  567889999999998876543       788999998651 1    111     2 22222111   0122346999


Q ss_pred             CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCC
Q 039497          445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN  506 (642)
Q Consensus       445 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~  506 (642)
                      |+++++.+.+.   +..+|+||..+...   +..|..+.+.+...+|+|....|...+.+.+
T Consensus       276 p~~~~i~ags~---dr~vyvwd~~~r~~---lyklpGh~gsvn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  276 PNGTKITAGSA---DRFVYVWDTTSRRI---LYKLPGHYGSVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             CCCCccccccc---cceEEEeecccccE---EEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence            99999988773   45899999987565   6888888889999999999998887777654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.33  E-value=1.3e-09  Score=123.84  Aligned_cols=225  Identities=11%  Similarity=0.092  Sum_probs=143.4

Q ss_pred             ccEEcCC-CCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          334 FPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       334 ~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      ...|++. +++|+....   ...|.++|+.+++......  ...+..+.|+| ++..|+..+       .++.+++|++.
T Consensus       537 ~l~~~~~~~~~las~~~---Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iWd~~  606 (793)
T PLN00181        537 GICWNSYIKSQVASSNF---EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-------DDGSVKLWSIN  606 (793)
T ss_pred             eEEeccCCCCEEEEEeC---CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-------CCCEEEEEECC
Confidence            4477764 566665443   4678888988765443332  56688999997 677776665       37899999986


Q ss_pred             eecCCCCCCCCCccccceEEccccCCCCccCcEE-CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccc
Q 039497          410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC-SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM  488 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~  488 (642)
                      .        +.     ....+...  ..+..+.| +++|+.|+..+.   +..|++||+.+++.  ....+..+...+..
T Consensus       607 ~--------~~-----~~~~~~~~--~~v~~v~~~~~~g~~latgs~---dg~I~iwD~~~~~~--~~~~~~~h~~~V~~  666 (793)
T PLN00181        607 Q--------GV-----SIGTIKTK--ANICCVQFPSESGRSLAFGSA---DHKVYYYDLRNPKL--PLCTMIGHSKTVSY  666 (793)
T ss_pred             C--------Cc-----EEEEEecC--CCeEEEEEeCCCCCEEEEEeC---CCeEEEEECCCCCc--cceEecCCCCCEEE
Confidence            5        22     33333322  34556777 567888887763   34899999976541  13455556566778


Q ss_pred             eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc----eEEee-ecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG----LRRIH-VAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      +.|+ ++.+|+..+.++.        |.+||+..+.    ...+. ..++..       .+..+.|++++++|+..+.++
T Consensus       667 v~f~-~~~~lvs~s~D~~--------ikiWd~~~~~~~~~~~~l~~~~gh~~-------~i~~v~~s~~~~~lasgs~D~  730 (793)
T PLN00181        667 VRFV-DSSTLVSSSTDNT--------LKLWDLSMSISGINETPLHSFMGHTN-------VKNFVGLSVSDGYIATGSETN  730 (793)
T ss_pred             EEEe-CCCEEEEEECCCE--------EEEEeCCCCccccCCcceEEEcCCCC-------CeeEEEEcCCCCEEEEEeCCC
Confidence            8897 7788887776654        8899986421    11121 123333       456789999999888877654


Q ss_pred             CcccCCCCCCCCCCCCCcEEEEEcCCCcee--------------eccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLR--------------RLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                                       .|++|+.....+.              .+..+...+.++.|+|++..+++....|
T Consensus       731 -----------------~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG  785 (793)
T PLN00181        731 -----------------EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG  785 (793)
T ss_pred             -----------------EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence                             6777765443211              0111223457889999999888776555

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.32  E-value=1.9e-09  Score=122.33  Aligned_cols=285  Identities=13%  Similarity=0.164  Sum_probs=170.4

Q ss_pred             CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC----c-----eeEeecCC-CcceEeeC-CeEEE
Q 039497          138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN----K-----RVIVCERG-GWPTWSGD-STIYF  206 (642)
Q Consensus       138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~-----~~l~~~~~-~~~~wspd-g~~~~  206 (642)
                      +.......+|+|||++||.+..+.            .|.+|+.....    .     ..+..... ....|++. +.+++
T Consensus       482 ~~~~V~~i~fs~dg~~latgg~D~------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~la  549 (793)
T PLN00181        482 SSNLVCAIGFDRDGEFFATAGVNK------------KIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVA  549 (793)
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCC------------EEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEE
Confidence            334456689999999999887665            67888865321    0     01111111 24589875 46666


Q ss_pred             EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCceeeEEEEEeecCCCCccc
Q 039497          207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHY  285 (642)
Q Consensus       207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~  285 (642)
                      +. ..+|...||  +..++.       ....+..+...+..++|+| +|..|+....+     ..+.+||+...      
T Consensus       550 s~-~~Dg~v~lW--d~~~~~-------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~------  608 (793)
T PLN00181        550 SS-NFEGVVQVW--DVARSQ-------LVTEMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQG------  608 (793)
T ss_pred             EE-eCCCeEEEE--ECCCCe-------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCC------
Confidence            66 567855555  555542       4455666666788899986 78877775443     38999997321      


Q ss_pred             CCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEE-cCCCCEEEEEecCCCceeEEEEECCCC
Q 039497          286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSF-SPDGGLIVFNHDFELNAGIKIAKSDGS  364 (642)
Q Consensus       286 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~l~~~d~~~~  364 (642)
                              ..+....                   ..        .......| +++|+.|+..+.   ...|+++|+...
T Consensus       609 --------~~~~~~~-------------------~~--------~~v~~v~~~~~~g~~latgs~---dg~I~iwD~~~~  650 (793)
T PLN00181        609 --------VSIGTIK-------------------TK--------ANICCVQFPSESGRSLAFGSA---DHKVYYYDLRNP  650 (793)
T ss_pred             --------cEEEEEe-------------------cC--------CCeEEEEEeCCCCCEEEEEeC---CCeEEEEECCCC
Confidence                    1111100                   00        00112355 467888877653   468888998765


Q ss_pred             Ce-e-EEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCc
Q 039497          365 KR-W-TLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFP  441 (642)
Q Consensus       365 ~~-~-~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  441 (642)
                      .. . .+.. ...+..+.|. ++..|+..+.       ++.++||++..  ........     ....+..+. .....+
T Consensus       651 ~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~-------D~~ikiWd~~~--~~~~~~~~-----~l~~~~gh~-~~i~~v  714 (793)
T PLN00181        651 KLPLCTMIGHSKTVSYVRFV-DSSTLVSSST-------DNTLKLWDLSM--SISGINET-----PLHSFMGHT-NVKNFV  714 (793)
T ss_pred             CccceEecCCCCCEEEEEEe-CCCEEEEEEC-------CCEEEEEeCCC--CccccCCc-----ceEEEcCCC-CCeeEE
Confidence            42 1 2221 4567788897 7777777663       78899999864  10000001     344555544 555678


Q ss_pred             EECCCCCeEEEEeCCCCceeEEEEECCCCcccc--------cee--eCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497          442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG--------DIR--QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE  511 (642)
Q Consensus       442 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~--------~~~--~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~  511 (642)
                      .|+|+|++|+..+.+   ..|++|+...+....        .+.  .+......+..+.|+|+|+.|+..+.++.     
T Consensus       715 ~~s~~~~~lasgs~D---~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~-----  786 (793)
T PLN00181        715 GLSVSDGYIATGSET---NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN-----  786 (793)
T ss_pred             EEcCCCCEEEEEeCC---CEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc-----
Confidence            999999988877743   378888876443100        000  01112234677899999998888877664     


Q ss_pred             ceeEEEEeC
Q 039497          512 AFSLYVIKP  520 (642)
Q Consensus       512 ~~~l~~~d~  520 (642)
                         |.+|++
T Consensus       787 ---I~i~~~  792 (793)
T PLN00181        787 ---IKILEM  792 (793)
T ss_pred             ---EEEEec
Confidence               777765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.31  E-value=1.7e-08  Score=99.97  Aligned_cols=287  Identities=13%  Similarity=0.077  Sum_probs=156.5

Q ss_pred             cceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCcee-EeecCC-----
Q 039497          120 SALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV-IVCERG-----  193 (642)
Q Consensus       120 ~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~-----  193 (642)
                      +.++.+|.++++...-...+..... .+||||+.|+.+....++  +.+......|-++|+++.+... |..+..     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R--~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-VVASDGSFFAHASTVYSR--IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-eECCCCCEEEEEeccccc--cccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            4799999998876543333333333 499999999877652110  1111234578899999988653 332211     


Q ss_pred             ----CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCcee
Q 039497          194 ----GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFR  269 (642)
Q Consensus       194 ----~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~  269 (642)
                          ...+.||||+.+|+.+ .+....+-.+|+.+++       ....+.-           |++..++.+....     
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n-~~p~~~V~VvD~~~~k-------vv~ei~v-----------p~~~~vy~t~e~~-----  159 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQ-FSPSPAVGVVDLEGKA-------FVRMMDV-----------PDCYHIFPTANDT-----  159 (352)
T ss_pred             cCccceEEECCCCCEEEEec-CCCCCEEEEEECCCCc-------EEEEEeC-----------CCCcEEEEecCCc-----
Confidence                1458999999888774 2223377888888773       2222222           5655544432221     


Q ss_pred             eEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEe
Q 039497          270 HIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNH  348 (642)
Q Consensus       270 ~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~  348 (642)
                                      ....+.||+.+.+........    ........+..  .    ..-...|.+++ ||+ .+|++
T Consensus       160 ----------------~~~~~~Dg~~~~v~~d~~g~~----~~~~~~vf~~~--~----~~v~~rP~~~~~dg~-~~~vs  212 (352)
T TIGR02658       160 ----------------FFMHCRDGSLAKVGYGTKGNP----KIKPTEVFHPE--D----EYLINHPAYSNKSGR-LVWPT  212 (352)
T ss_pred             ----------------cEEEeecCceEEEEecCCCce----EEeeeeeecCC--c----cccccCCceEcCCCc-EEEEe
Confidence                            123456666555443222210    00000000000  0    00113445666 776 55555


Q ss_pred             cCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCEEEEEEcCCC-cccCCCeEEEEEEEeecC
Q 039497          349 DFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKHVIYTSTGPI-FQSERATVQIARVSFQLD  413 (642)
Q Consensus       349 ~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~  413 (642)
                      ..   +.|+++|+.+........              .+....++++|||+++++...+.. ..-..+.-++|.++.  .
T Consensus       213 ~e---G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~--~  287 (352)
T TIGR02658       213 YT---GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA--K  287 (352)
T ss_pred             cC---CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC--C
Confidence            43   889999976554332211              122334899999999998653211 001122335666655  2


Q ss_pred             CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497          414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT  480 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~  480 (642)
                           +++    ....+..+  .....+++||||+.++|..+. ....|.++|..+++.   ++.+.
T Consensus       288 -----t~k----vi~~i~vG--~~~~~iavS~Dgkp~lyvtn~-~s~~VsViD~~t~k~---i~~i~  339 (352)
T TIGR02658       288 -----TGK----RLRKIELG--HEIDSINVSQDAKPLLYALST-GDKTLYIFDAETGKE---LSSVN  339 (352)
T ss_pred             -----CCe----EEEEEeCC--CceeeEEECCCCCeEEEEeCC-CCCcEEEEECcCCeE---Eeeec
Confidence                 221    34444433  367789999999955555543 234799999999876   55553

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.30  E-value=4e-10  Score=103.53  Aligned_cols=282  Identities=13%  Similarity=0.020  Sum_probs=185.1

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL  315 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~  315 (642)
                      ..+..+...+....|+|||..++.     ++....|.+|++....                     +         ..|.
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aS-----gG~Dr~I~LWnv~gdc---------------------e---------N~~~   85 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFAS-----GGSDRAIVLWNVYGDC---------------------E---------NFWV   85 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEee-----cCCcceEEEEeccccc---------------------c---------ceee
Confidence            455666778889999999999888     4555688888862111                     0         0010


Q ss_pred             eeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcC
Q 039497          316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTG  393 (642)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~  393 (642)
                      .  ++       .........|++|++.|+..+.   ...|+.+|+++++...--.  ...+..+.-+.-|-.++...  
T Consensus        86 l--kg-------HsgAVM~l~~~~d~s~i~S~gt---Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg--  151 (338)
T KOG0265|consen   86 L--KG-------HSGAVMELHGMRDGSHILSCGT---DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSG--  151 (338)
T ss_pred             e--cc-------ccceeEeeeeccCCCEEEEecC---CceEEEEecccceeeehhccccceeeecCccccCCeEEEec--
Confidence            0  00       0111134588999998877653   4789999999887544322  23344444333455555554  


Q ss_pred             CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc
Q 039497          394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN  473 (642)
Q Consensus       394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~  473 (642)
                          .++.+++||++..  +      .     .++.+. .. .....+.|..++..+....-+   .+|-+||+..+.. 
T Consensus       152 ----sdD~t~kl~D~R~--k------~-----~~~t~~-~k-yqltAv~f~d~s~qv~sggId---n~ikvWd~r~~d~-  208 (338)
T KOG0265|consen  152 ----SDDGTLKLWDIRK--K------E-----AIKTFE-NK-YQLTAVGFKDTSDQVISGGID---NDIKVWDLRKNDG-  208 (338)
T ss_pred             ----CCCceEEEEeecc--c------c-----hhhccc-cc-eeEEEEEecccccceeecccc---CceeeeccccCcc-
Confidence                4689999999976  2      1     222222 22 466778899888887655432   3688899876654 


Q ss_pred             cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC--ceEEeee-cCCCCCCCcccccccceEEc
Q 039497          474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS--GLRRIHV-AGPEGSGDVDRERINHVCFS  550 (642)
Q Consensus       474 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~-~~~~~~~~~~~~~~~~~~~S  550 (642)
                        ...+..+...+.++..||+|.++.-.+.+..        +.+||+.--  ..+.+.. .+...   +-.......+||
T Consensus       209 --~~~lsGh~DtIt~lsls~~gs~llsnsMd~t--------vrvwd~rp~~p~~R~v~if~g~~h---nfeknlL~csws  275 (338)
T KOG0265|consen  209 --LYTLSGHADTITGLSLSRYGSFLLSNSMDNT--------VRVWDVRPFAPSQRCVKIFQGHIH---NFEKNLLKCSWS  275 (338)
T ss_pred             --eEEeecccCceeeEEeccCCCccccccccce--------EEEEEecccCCCCceEEEeecchh---hhhhhcceeecc
Confidence              5667777778899999999999887776654        888887532  1221211 12111   000134567999


Q ss_pred             CCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC-CceeeccCCCCCCCCcEEecCCceEEeecC
Q 039497          551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG-SGLRRLTWNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       551 ~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      |+++.+-+.+.+.                 .+|+||..+ .-+-.|..+.+.+....|+|....++++..
T Consensus       276 p~~~~i~ags~dr-----------------~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s  328 (338)
T KOG0265|consen  276 PNGTKITAGSADR-----------------FVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS  328 (338)
T ss_pred             CCCCccccccccc-----------------eEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence            9999998877653                 799999877 446788888888899999999998887654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=7e-10  Score=112.52  Aligned_cols=259  Identities=15%  Similarity=0.137  Sum_probs=176.5

Q ss_pred             ceEEEEccCCceEecccC-CCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec-CC---Cc
Q 039497          121 ALYSTDLKASKFTRLTPY-GVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-RG---GW  195 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~---~~  195 (642)
                      .+|+.+..++.++.|... ........|+++|++||.....+            .|.+||.+..+..+-... +.   +.
T Consensus       198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g------------~v~iwD~~~~k~~~~~~~~h~~rvg~  265 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDG------------TVQIWDVKEQKKTRTLRGSHASRVGS  265 (484)
T ss_pred             eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCC------------eEEEEehhhccccccccCCcCceeEE
Confidence            577779999999998876 44567889999999999987655            799999887665444333 22   45


Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      .+|.  +.++.+. ..++.+..+.+.....        ....+..+..++-.+.|++||+++|.     |+....+.+||
T Consensus       266 laW~--~~~lssG-sr~~~I~~~dvR~~~~--------~~~~~~~H~qeVCgLkws~d~~~lAS-----GgnDN~~~Iwd  329 (484)
T KOG0305|consen  266 LAWN--SSVLSSG-SRDGKILNHDVRISQH--------VVSTLQGHRQEVCGLKWSPDGNQLAS-----GGNDNVVFIWD  329 (484)
T ss_pred             Eecc--CceEEEe-cCCCcEEEEEEecchh--------hhhhhhcccceeeeeEECCCCCeecc-----CCCccceEecc
Confidence            6887  3455554 4567555555443332        22235566667888999999999998     44555788887


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG  355 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  355 (642)
                      .....                              ....+..          .......++|+|=..-|+-.+.+.....
T Consensus       330 ~~~~~------------------------------p~~~~~~----------H~aAVKA~awcP~q~~lLAsGGGs~D~~  369 (484)
T KOG0305|consen  330 GLSPE------------------------------PKFTFTE----------HTAAVKALAWCPWQSGLLATGGGSADRC  369 (484)
T ss_pred             CCCcc------------------------------ccEEEec----------cceeeeEeeeCCCccCceEEcCCCcccE
Confidence            61100                              0000000          0111124588886655666555566788


Q ss_pred             EEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497          356 IKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE  434 (642)
Q Consensus       356 l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  434 (642)
                      |..+|..++....... ...+..+.|++..+.|+.+..     .....+.||....  -      .     ....+..+.
T Consensus       370 i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG-----~s~n~i~lw~~ps--~------~-----~~~~l~gH~  431 (484)
T KOG0305|consen  370 IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHG-----YSENQITLWKYPS--M------K-----LVAELLGHT  431 (484)
T ss_pred             EEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecC-----CCCCcEEEEeccc--c------c-----eeeeecCCc
Confidence            9999998877555444 667899999999998887754     3466889999865  1      1     566677776


Q ss_pred             CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497          435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN  469 (642)
Q Consensus       435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~  469 (642)
                       ..+.++++||||..|+.++.+   ..|..|++-+
T Consensus       432 -~RVl~la~SPdg~~i~t~a~D---ETlrfw~~f~  462 (484)
T KOG0305|consen  432 -SRVLYLALSPDGETIVTGAAD---ETLRFWNLFD  462 (484)
T ss_pred             -ceeEEEEECCCCCEEEEeccc---CcEEeccccC
Confidence             789999999999999988743   4677777654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=3.8e-09  Score=95.81  Aligned_cols=275  Identities=14%  Similarity=0.118  Sum_probs=160.4

Q ss_pred             cccCCCccCCceeCCC-CcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCce---eEeec-CC---CcceEeeCCeEEE
Q 039497          135 LTPYGVVDYSPSVSYS-GKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKR---VIVCE-RG---GWPTWSGDSTIYF  206 (642)
Q Consensus       135 lt~~~~~~~~~~~SPD-G~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~l~~~-~~---~~~~wspdg~~~~  206 (642)
                      +..+.......+|.|- |..||..+.+.            .|.+|+..++..-   .+... +.   ...+|+|.|++++
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk------------~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La   77 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDK------------AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLA   77 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCc------------eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEE
Confidence            3333444455788887 88888777655            6888888754322   12211 11   2579999999888


Q ss_pred             EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccC
Q 039497          207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYN  286 (642)
Q Consensus       207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  286 (642)
                      ++ ..+.+..||.-.-..-       +....|.++..++..++||++|.+||.+++.+     .+|+|..........  
T Consensus        78 ~a-SFD~t~~Iw~k~~~ef-------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK-----SVWiWe~deddEfec--  142 (312)
T KOG0645|consen   78 SA-SFDATVVIWKKEDGEF-------ECVATLEGHENEVKCVAWSASGNYLATCSRDK-----SVWIWEIDEDDEFEC--  142 (312)
T ss_pred             Ee-eccceEEEeecCCCce-------eEEeeeeccccceeEEEEcCCCCEEEEeeCCC-----eEEEEEecCCCcEEE--
Confidence            77 5677777876442221       14556778888899999999999999998877     799998742221111  


Q ss_pred             CeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe
Q 039497          287 PFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR  366 (642)
Q Consensus       287 ~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~  366 (642)
                               ++.                          |+..........|+|....|+-.++ ++...+|.-.. ...-
T Consensus       143 ---------~aV--------------------------L~~HtqDVK~V~WHPt~dlL~S~SY-DnTIk~~~~~~-dddW  185 (312)
T KOG0645|consen  143 ---------IAV--------------------------LQEHTQDVKHVIWHPTEDLLFSCSY-DNTIKVYRDED-DDDW  185 (312)
T ss_pred             ---------Eee--------------------------eccccccccEEEEcCCcceeEEecc-CCeEEEEeecC-CCCe
Confidence                     000                          0011112235589998876655554 44445554332 3322


Q ss_pred             --eEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE
Q 039497          367 --WTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS  442 (642)
Q Consensus       367 --~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  442 (642)
                        .+...  ...+..+.|.|.|.+|+.++.       +..+.||....  +             ...+.   .+..+.+.
T Consensus       186 ~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd-------D~tv~Iw~~~~--~-------------~~~~~---sr~~Y~v~  240 (312)
T KOG0645|consen  186 ECVQTLDGHENTVWSLAFDNIGSRLVSCSD-------DGTVSIWRLYT--D-------------LSGMH---SRALYDVP  240 (312)
T ss_pred             eEEEEecCccceEEEEEecCCCceEEEecC-------CcceEeeeecc--C-------------cchhc---ccceEeee
Confidence              22222  347889999999999998874       78899998644  1             11111   13455566


Q ss_pred             ECCCCCeEEEEeCCCCceeEEEEEC--CCCccccceeeC----CCCCCcccceeEecCC-CEEEEEecCC
Q 039497          443 CSPDGKFLVFRSGRSGHKNLFVLDA--VNGEFNGDIRQL----TDGPWIDTMPSWSPKG-DLIAFSSNRH  505 (642)
Q Consensus       443 ~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~~~~~~~l----~~~~~~~~~~~~spdG-~~l~~~~~~~  505 (642)
                      |- +| .|+ +...++...||.-..  +...    ...+    ..+...+++++|.|.+ ++|+..++++
T Consensus       241 W~-~~-~Ia-S~ggD~~i~lf~~s~~~d~p~----~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG  303 (312)
T KOG0645|consen  241 WD-NG-VIA-SGGGDDAIRLFKESDSPDEPS----WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDG  303 (312)
T ss_pred             ec-cc-ceE-eccCCCEEEEEEecCCCCCch----HHHHHhhhcccccccceEEEcCCCCCceeecCCCc
Confidence            76 33 333 333333334444331  1111    1222    2244577899999964 4454444443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.29  E-value=1.1e-09  Score=111.08  Aligned_cols=324  Identities=16%  Similarity=0.159  Sum_probs=159.6

Q ss_pred             eeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccc
Q 039497          172 NTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTP  248 (642)
Q Consensus       172 ~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  248 (642)
                      ...|.++|.++.+..........   .+.++|||+.+|+.+ .+|  .|..+|+.+.+       ...++. .+.....+
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg--~vsviD~~~~~-------~v~~i~-~G~~~~~i   83 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDG--TVSVIDLATGK-------VVATIK-VGGNPRGI   83 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTS--EEEEEETTSSS-------EEEEEE--SSEEEEE
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-CCC--eEEEEECCccc-------EEEEEe-cCCCcceE
Confidence            34788999888775554443222   347899998888773 466  78889998873       333443 34456678


Q ss_pred             eeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe
Q 039497          249 AAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML  328 (642)
Q Consensus       249 ~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (642)
                      ++|+||++++.+....+    .+.++|..+..              .+..... +.           .........    
T Consensus        84 ~~s~DG~~~~v~n~~~~----~v~v~D~~tle--------------~v~~I~~-~~-----------~~~~~~~~R----  129 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPG----TVSVIDAETLE--------------PVKTIPT-GG-----------MPVDGPESR----  129 (369)
T ss_dssp             EE--TTTEEEEEEEETT----EEEEEETTT----------------EEEEEE---E-----------E-TTTS-------
T ss_pred             EEcCCCCEEEEEecCCC----ceeEecccccc--------------ceeeccc-cc-----------ccccccCCC----
Confidence            99999999988654433    66676652211              0000000 00           000000000    


Q ss_pred             eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEE
Q 039497          329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI  405 (642)
Q Consensus       329 ~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l  405 (642)
                         ...+.-+|....+++...  ...+||++|...........   ....+...|+|++++++.....      ...+.+
T Consensus       130 ---v~aIv~s~~~~~fVv~lk--d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~------sn~i~v  198 (369)
T PF02239_consen  130 ---VAAIVASPGRPEFVVNLK--DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG------SNKIAV  198 (369)
T ss_dssp             ---EEEEEE-SSSSEEEEEET--TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG------GTEEEE
T ss_pred             ---ceeEEecCCCCEEEEEEc--cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc------cceeEE
Confidence               012344777776666543  25789999977654333222   5667889999999999887642      333333


Q ss_pred             EEEEeecCCCCCCCCCccccceEEc-cccC---CCCccCcEECCCCCeEEEEeCCC-------CceeEEEEECCCCcccc
Q 039497          406 ARVSFQLDPSDDNNREEIPCDVKIL-TKEE---TGNNAFPSCSPDGKFLVFRSGRS-------GHKNLFVLDAVNGEFNG  474 (642)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~~~~~~~~SpDg~~l~~~~~~~-------g~~~l~~~d~~~g~~~~  474 (642)
                      ++...         +     +...+ ....   ...... ..+|..-.+.......       +...+.+++..+.+.  
T Consensus       199 iD~~~---------~-----k~v~~i~~g~~p~~~~~~~-~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv--  261 (369)
T PF02239_consen  199 IDTKT---------G-----KLVALIDTGKKPHPGPGAN-FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV--  261 (369)
T ss_dssp             EETTT---------T-----EEEEEEE-SSSBEETTEEE-EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE--
T ss_pred             Eeecc---------c-----eEEEEeecccccccccccc-ccCCCcceEEeeccccceecccccCCccccchhhcCeE--
Confidence            33211         1     11111 1110   000000 1222222222222111       001122334444443  


Q ss_pred             ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497          475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       475 ~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                       ++.+...... ..+.-+||+++|++....+.    ....|.++|.++-+...-.......       .+.++.|++||+
T Consensus       262 -v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~----~~~~v~viD~~tl~~~~~i~~~~~~-------~~~h~ef~~dG~  328 (369)
T PF02239_consen  262 -VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNP----DADTVQVIDKKTLKVVKTITPGPGK-------RVVHMEFNPDGK  328 (369)
T ss_dssp             -EEEEE-SSSS---EE--TT-SEEEEE-TT-S----SHT-EEEEECCGTEEEE-HHHHHT---------EEEEEE-TTSS
T ss_pred             -EEEEECCCCc-ceeecCCCCccEEeeccCCC----CCceEEEEECcCcceeEEEeccCCC-------cEeccEECCCCC
Confidence             4555543333 55678999999998843322    3567999999876432211111111       357899999999


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeecc
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLT  596 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt  596 (642)
                      .++++..+.+               ..|.++|..+.+ +.+++
T Consensus       329 ~v~vS~~~~~---------------~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  329 EVWVSVWDGN---------------GAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEEEEE--T---------------TEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEecCC---------------CEEEEEECCCcEEEEEEE
Confidence            9999877653               279999988765 44544

...

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=4.3e-08  Score=99.90  Aligned_cols=166  Identities=14%  Similarity=0.122  Sum_probs=109.3

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCe
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKF  449 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~  449 (642)
                      ...+...+.||||+.|++.+        -.+..||.+..  +      ...   +...+....  ......+.|+-|+..
T Consensus       382 ~~nIs~~aiSPdg~~Ia~st--------~~~~~iy~L~~--~------~~v---k~~~v~~~~~~~~~a~~i~ftid~~k  442 (691)
T KOG2048|consen  382 KENISCAAISPDGNLIAIST--------VSRTKIYRLQP--D------PNV---KVINVDDVPLALLDASAISFTIDKNK  442 (691)
T ss_pred             ccceeeeccCCCCCEEEEee--------ccceEEEEecc--C------cce---eEEEeccchhhhccceeeEEEecCce
Confidence            45677889999999999987        56778888876  3      111   222222111  124556789999999


Q ss_pred             EEEEeCCCCceeEEEEECCCCccccceeeCCCC--CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       450 l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                      +++.+..  ..++..+++.+... +++..+...  ...+..+.-||||++|+..+..+.        |++|++++.+.+.
T Consensus       443 ~~~~s~~--~~~le~~el~~ps~-kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~--------I~v~nl~~~~~~~  511 (691)
T KOG2048|consen  443 LFLVSKN--IFSLEEFELETPSF-KELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQ--------IFVYNLETLESHL  511 (691)
T ss_pred             EEEEecc--cceeEEEEecCcch-hhhhccccccCCCcceeEEEcCCCCEEEEEeccce--------EEEEEcccceeec
Confidence            9888843  34667777666553 113333322  234567789999999999997765        9999999988877


Q ss_pred             eeecCCCCCCCcccccccceEEcCC-CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497          528 IHVAGPEGSGDVDRERINHVCFSAD-GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL  592 (642)
Q Consensus       528 l~~~~~~~~~~~~~~~~~~~~~S~D-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  592 (642)
                      +... .+.       .++.+.|+|. -..|+.....+                 ++|.+|++..++
T Consensus       512 l~~r-ln~-------~vTa~~~~~~~~~~lvvats~n-----------------Qv~efdi~~~~l  552 (691)
T KOG2048|consen  512 LKVR-LNI-------DVTAAAFSPFVRNRLVVATSNN-----------------QVFEFDIEARNL  552 (691)
T ss_pred             chhc-cCc-------ceeeeeccccccCcEEEEecCC-----------------eEEEEecchhhh
Confidence            6531 122       4678889954 45555554432                 788888854443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1.7e-10  Score=111.77  Aligned_cols=227  Identities=14%  Similarity=0.141  Sum_probs=147.0

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ..+.|+|.-. |+.+..-++..+||.+|-+.....+-..  .-.+....|+|+|+..++++.      ...-++.|++..
T Consensus       217 ~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~------rrky~ysyDle~  289 (514)
T KOG2055|consen  217 TSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSG------RRKYLYSYDLET  289 (514)
T ss_pred             eEEEecCCCc-eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecc------cceEEEEeeccc
Confidence            3567888766 4454444666666666655444333322  556888999999996666653      255667777755


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                        .      ...   +..++...+...+..+.+|||+++|++...   ...|+++...|++.    ..-....+.+..+.
T Consensus       290 --a------k~~---k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G~I~lLhakT~el----i~s~KieG~v~~~~  351 (514)
T KOG2055|consen  290 --A------KVT---KLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NGHIHLLHAKTKEL----ITSFKIEGVVSDFT  351 (514)
T ss_pred             --c------ccc---cccCCCCcccchhheeEecCCCCeEEEccc---CceEEeehhhhhhh----hheeeeccEEeeEE
Confidence              1      111   222222222245667899999999988763   34899999888875    33233457788899


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee-cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP  569 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~  569 (642)
                      |+.||+.|+..+..+        +||+||+.......... .+..        .-..++.|++|.+|+..+..+-.    
T Consensus       352 fsSdsk~l~~~~~~G--------eV~v~nl~~~~~~~rf~D~G~v--------~gts~~~S~ng~ylA~GS~~GiV----  411 (514)
T KOG2055|consen  352 FSSDSKELLASGGTG--------EVYVWNLRQNSCLHRFVDDGSV--------HGTSLCISLNGSYLATGSDSGIV----  411 (514)
T ss_pred             EecCCcEEEEEcCCc--------eEEEEecCCcceEEEEeecCcc--------ceeeeeecCCCceEEeccCcceE----
Confidence            999999888877655        39999998765443322 2211        23678889999988888776533    


Q ss_pred             CCCCCCCCCCCcEEEEE--cCCCceeeccC---CCCCCCCcEEecCCceEE
Q 039497          570 VSWPNQFQPYGDLYVVK--LDGSGLRRLTW---NGYENGTPAWHPGNQLDL  615 (642)
Q Consensus       570 ~~~~~~~~~~~~l~~~~--~~~~~~~~lt~---~~~~~~~~~~s~dg~~~~  615 (642)
                                 +||-.+  ..+..++.+..   -...+.++.|++|+|.++
T Consensus       412 -----------NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA  451 (514)
T KOG2055|consen  412 -----------NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA  451 (514)
T ss_pred             -----------EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence                       666543  23344444443   223467999999999874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=9.1e-10  Score=111.68  Aligned_cols=269  Identities=16%  Similarity=0.094  Sum_probs=176.1

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-CCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      .+.|+..+- ++++.+    ..+|.++..++        ....+... ...+..+.|+++|++|++....+     .+.+
T Consensus       182 lldWss~n~-laValg----~~vylW~~~s~--------~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g-----~v~i  243 (484)
T KOG0305|consen  182 LLDWSSANV-LAVALG----QSVYLWSASSG--------SVTELCSFGEELVTSVKWSPDGSHLAVGTSDG-----TVQI  243 (484)
T ss_pred             HhhcccCCe-EEEEec----ceEEEEecCCC--------ceEEeEecCCCceEEEEECCCCCEEEEeecCC-----eEEE
Confidence            358996654 444322    27899998887        66666555 55788899999999999955443     8999


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  353 (642)
                      ||.........                                 +...      ........+|.  +. ++....+  .
T Consensus       244 wD~~~~k~~~~---------------------------------~~~~------h~~rvg~laW~--~~-~lssGsr--~  279 (484)
T KOG0305|consen  244 WDVKEQKKTRT---------------------------------LRGS------HASRVGSLAWN--SS-VLSSGSR--D  279 (484)
T ss_pred             Eehhhcccccc---------------------------------ccCC------cCceeEEEecc--Cc-eEEEecC--C
Confidence            99733221100                                 0000      00011133454  22 2222222  2


Q ss_pred             eeEEEEECCCCCe--eEEe-ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          354 AGIKIAKSDGSKR--WTLI-KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       354 ~~l~~~d~~~~~~--~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      ..|..+|+...+.  ..+. +...+..+.|++|+++++-..       .++.+.||+...        ..     ....+
T Consensus       280 ~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg-------nDN~~~Iwd~~~--------~~-----p~~~~  339 (484)
T KOG0305|consen  280 GKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG-------NDNVVFIWDGLS--------PE-----PKFTF  339 (484)
T ss_pred             CcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCC-------CccceEeccCCC--------cc-----ccEEE
Confidence            3444444433322  1111 256788899999999998765       378999999843        12     56667


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      ..+. ..+..++|+|=-+-|+.+.....+..|..||..+|+.   +..+..+ ..+.++.|++..+.|+.+.....    
T Consensus       340 ~~H~-aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~---i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~----  410 (484)
T KOG0305|consen  340 TEHT-AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR---IDSVDTG-SQVCSLIWSKKYKELLSTHGYSE----  410 (484)
T ss_pred             eccc-eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE---ecccccC-CceeeEEEcCCCCEEEEecCCCC----
Confidence            7776 7888899999887788777766778999999999986   4445444 45788999999999998887643    


Q ss_pred             CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                        .+|-+|+..+-+..... .++..       .+..+++||||+.|+..+.+++
T Consensus       411 --n~i~lw~~ps~~~~~~l-~gH~~-------RVl~la~SPdg~~i~t~a~DET  454 (484)
T KOG0305|consen  411 --NQITLWKYPSMKLVAEL-LGHTS-------RVLYLALSPDGETIVTGAADET  454 (484)
T ss_pred             --CcEEEEeccccceeeee-cCCcc-------eeEEEEECCCCCEEEEecccCc
Confidence              34666666553333222 25555       7889999999999999998764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.27  E-value=4.1e-09  Score=103.73  Aligned_cols=328  Identities=11%  Similarity=0.051  Sum_probs=193.8

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC-ceeEeecCCCcceEeeCCeEEEEEecC-------CC
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN-KRVIVCERGGWPTWSGDSTIYFHRQAD-------DG  213 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~l~~~~~~~~~wspdg~~~~~~~~~-------~g  213 (642)
                      ....++||-|++|+......             |-+|.-.... ..+..+...-...+||.+++|.+-..+       ++
T Consensus        35 ~~~~~~SP~G~~l~~~~~~~-------------V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~  101 (561)
T COG5354          35 VAYVSESPLGTYLFSEHAAG-------------VECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEI  101 (561)
T ss_pred             hhheeecCcchheehhhccc-------------eEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhcc
Confidence            35678999999998764332             4444433332 222222333456888888777653211       01


Q ss_pred             ---c--eEEEEEecCCCcccccCCcccee-eCCCCC-c-cc-cceeecCCcEEEEEEeccCCceeeEEEEEee-------
Q 039497          214 ---W--WSIFRVSFPENLEFLGFPIAPTR-VTPPGV-H-CF-TPAAFHDGKRLAVATRRKNRNFRHIEIYDLT-------  277 (642)
Q Consensus       214 ---~--~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~-~-~~-~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~-------  277 (642)
                         +  -+++.+|..+|.        +.. ...... . .. ...||-|.++++...      ...+.++++.       
T Consensus       102 sp~~~~n~~~vwd~~sg~--------iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv------~~sl~i~e~t~n~~~~p  167 (561)
T COG5354         102 SPFTSKNNVFVWDIASGM--------IVFSFNGISQPYLGWPVLKFSIDDKYVARVV------GSSLYIHEITDNIEEHP  167 (561)
T ss_pred             CCccccCceeEEeccCce--------eEeeccccCCcccccceeeeeecchhhhhhc------cCeEEEEecCCccccCc
Confidence               1  168899988883        222 111111 1 11 356788888777642      2367788851       


Q ss_pred             --cCCCCcccCCeecCCCC--EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC---
Q 039497          278 --LNPNFHHYNPFVSANSE--FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF---  350 (642)
Q Consensus       278 --~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---  350 (642)
                        .-...++..+.|||-|.  .|+|..-..... -..+.++....+.......+....+..+.|.+.|+.|++....   
T Consensus       168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~k-pa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~k  246 (561)
T COG5354         168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNK-PAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTK  246 (561)
T ss_pred             hhhccccceeeEEecCCCCCceEEEEccccCCC-CcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeee
Confidence              11234566788999654  455543222211 1123333333333344445556667788999999999884431   


Q ss_pred             -----CCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccc
Q 039497          351 -----ELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIP  424 (642)
Q Consensus       351 -----~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  424 (642)
                           -+..+|+++++.....+.... .+.++.+.|.|+++.+++++.     .....+.++++..              
T Consensus       247 snKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g-----~~pa~~s~~~lr~--------------  307 (561)
T COG5354         247 SNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISG-----YMPASVSVFDLRG--------------  307 (561)
T ss_pred             cccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEec-----ccccceeeccccc--------------
Confidence                 134789999988666544423 678999999999999998873     1234455555543              


Q ss_pred             cceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEec
Q 039497          425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSN  503 (642)
Q Consensus       425 ~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~  503 (642)
                       ..+.....  ..-..+.|||.+++++++.-.+-...+-+++.. |+.    ..+.. .......+.|||||.++.....
T Consensus       308 -Nl~~~~Pe--~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~-~rf----~~~~~~~~~n~s~~~wspd~qF~~~~~t  379 (561)
T COG5354         308 -NLRFYFPE--QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA-GRF----KVAGAFNGLNTSYCDWSPDGQFYDTDTT  379 (561)
T ss_pred             -ceEEecCC--cccccccccCcccEEEEecCCccccceEEeccC-Cce----EEEEEeecCCceEeeccCCceEEEecCC
Confidence             33333222  233458899999999998877666688889987 443    33322 1123355689999997766554


Q ss_pred             CCCCCCCCceeEEEEeCCCCceE
Q 039497          504 RHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       504 ~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                      ...  ....+.+-+||+.+...-
T Consensus       380 s~k--~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         380 SEK--LRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             Ccc--cccCcceEEEEecCchhh
Confidence            432  113455777887665443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=7.7e-10  Score=116.06  Aligned_cols=213  Identities=17%  Similarity=0.195  Sum_probs=144.0

Q ss_pred             EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      +.-++.+++..+.   .+.|.++....++...+..  .-.+..++++.+|+.+++.+.       +..+.+..+..    
T Consensus        62 ia~~s~~f~~~s~---~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsd-------D~~vK~~~~~D----  127 (933)
T KOG1274|consen   62 IACYSNHFLTGSE---QNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSD-------DTAVKLLNLDD----  127 (933)
T ss_pred             EeecccceEEeec---cceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecC-------ceeEEEEeccc----
Confidence            3444555555443   3677788887777654433  456788999999999999874       66777777654    


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC---C-----CCcc
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD---G-----PWID  486 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~---~-----~~~~  486 (642)
                          +.     ..+.+..+. ..+..+.|+|.|+.|+..+   .++.|++|+++++..   ...++.   .     ....
T Consensus       128 ----~s-----~~~~lrgh~-apVl~l~~~p~~~fLAvss---~dG~v~iw~~~~~~~---~~tl~~v~k~n~~~~s~i~  191 (933)
T KOG1274|consen  128 ----SS-----QEKVLRGHD-APVLQLSYDPKGNFLAVSS---CDGKVQIWDLQDGIL---SKTLTGVDKDNEFILSRIC  191 (933)
T ss_pred             ----cc-----hheeecccC-CceeeeeEcCCCCEEEEEe---cCceEEEEEcccchh---hhhcccCCcccccccccee
Confidence                23     445555555 8889999999999999887   445899999998876   344432   1     2234


Q ss_pred             cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497          487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM  566 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~  566 (642)
                      ..++|+|+|..+++...++.        |.+|+.++-+..-....+...+      .+..++|||.|++|+....++   
T Consensus       192 ~~~aW~Pk~g~la~~~~d~~--------Vkvy~r~~we~~f~Lr~~~~ss------~~~~~~wsPnG~YiAAs~~~g---  254 (933)
T KOG1274|consen  192 TRLAWHPKGGTLAVPPVDNT--------VKVYSRKGWELQFKLRDKLSSS------KFSDLQWSPNGKYIAASTLDG---  254 (933)
T ss_pred             eeeeecCCCCeEEeeccCCe--------EEEEccCCceeheeeccccccc------ceEEEEEcCCCcEEeeeccCC---
Confidence            56799999877877776654        8888887765543322222220      367899999999999888665   


Q ss_pred             cCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCce
Q 039497          567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL  613 (642)
Q Consensus       567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~  613 (642)
                                    .|-+||.++-..   ......+...+|-|+...
T Consensus       255 --------------~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~  284 (933)
T KOG1274|consen  255 --------------QILVWNVDTHER---HEFKRAVCCEAWKPNANA  284 (933)
T ss_pred             --------------cEEEEecccchh---ccccceeEEEecCCCCCe
Confidence                          788888876221   112234456677776633

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.26  E-value=2e-08  Score=102.01  Aligned_cols=317  Identities=16%  Similarity=0.163  Sum_probs=157.3

Q ss_pred             ceEEEEccCCceE-ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC--Ccce
Q 039497          121 ALYSTDLKASKFT-RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPT  197 (642)
Q Consensus       121 ~l~~~~~~~~~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~  197 (642)
                      .+..++.++.+.. ++.........+.+||||++++....++            .|-++|+.+.+..+-.....  ...+
T Consensus        17 ~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg------------~vsviD~~~~~~v~~i~~G~~~~~i~   84 (369)
T PF02239_consen   17 SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDG------------TVSVIDLATGKVVATIKVGGNPRGIA   84 (369)
T ss_dssp             EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTS------------EEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred             EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCC------------eEEEEECCcccEEEEEecCCCcceEE
Confidence            7999998887654 4544333334467999999988775433            68899999988544433222  2469


Q ss_pred             EeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCC-------ccccceeecCCcEEEEEEeccCCceee
Q 039497          198 WSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGV-------HCFTPAAFHDGKRLAVATRRKNRNFRH  270 (642)
Q Consensus       198 wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~SpdG~~l~~~~~~~~~~~~~  270 (642)
                      +|+||+++++++...+  ++..+|..+.+       ..+.+...+.       .+..+..+|....+++...+.+    .
T Consensus        85 ~s~DG~~~~v~n~~~~--~v~v~D~~tle-------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~----~  151 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPG--TVSVIDAETLE-------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG----E  151 (369)
T ss_dssp             E--TTTEEEEEEEETT--EEEEEETTT---------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT----E
T ss_pred             EcCCCCEEEEEecCCC--ceeEecccccc-------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCC----e
Confidence            9999998888765556  67777877763       2333322211       1122233666665555333322    4


Q ss_pred             EEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeC--CCccEEcCCCCEEEEEe
Q 039497          271 IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLN--GSFPSFSPDGGLIVFNH  348 (642)
Q Consensus       271 i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~~~  348 (642)
                      +++.|....              +.+..                           ......  .....|+|+|++++...
T Consensus       152 I~vVdy~d~--------------~~~~~---------------------------~~i~~g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  152 IWVVDYSDP--------------KNLKV---------------------------TTIKVGRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             EEEEETTTS--------------SCEEE---------------------------EEEE--TTEEEEEE-TTSSEEEEEE
T ss_pred             EEEEEeccc--------------cccce---------------------------eeecccccccccccCcccceeeecc
Confidence            555443110              00000                           000000  01347999999876654


Q ss_pred             cCCCceeEEEEECCCCCeeEEeecC-Cce---ee-eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC--CCCCC
Q 039497          349 DFELNAGIKIAKSDGSKRWTLIKDR-TAF---YN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD--DNNRE  421 (642)
Q Consensus       349 ~~~~~~~l~~~d~~~~~~~~l~~~~-~~~---~~-~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~  421 (642)
                      .  ....|-++|.++++...+...+ ...   .. ...|..-.+.....       .....+-.+..  +...  .....
T Consensus       191 ~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~-------~~~~~~~~ig~--~~v~v~d~~~w  259 (369)
T PF02239_consen  191 N--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG-------LGYFAIPLIGT--DPVSVHDDYAW  259 (369)
T ss_dssp             G--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB-------SSSSEEEEEE----TTT-STTTBT
T ss_pred             c--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc-------ccceecccccC--CccccchhhcC
Confidence            3  3458888898887765554311 111   11 12233222332221       11111111211  1000  00000


Q ss_pred             ccccceEEccccCCCCccCcEECCCCCeEEEEeC-CCCceeEEEEECCCCccccceeeCCCCCC-cccceeEecCCCEEE
Q 039497          422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG-RSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIA  499 (642)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~-~~g~~~l~~~d~~~g~~~~~~~~l~~~~~-~~~~~~~spdG~~l~  499 (642)
                      +   ..+.+.... .. ..+..+||++++++... ......|.++|.++-+.   ...+....+ ...++.|++||++++
T Consensus       260 k---vv~~I~~~G-~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~---~~~i~~~~~~~~~h~ef~~dG~~v~  331 (369)
T PF02239_consen  260 K---VVKTIPTQG-GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV---VKTITPGPGKRVVHMEFNPDGKEVW  331 (369)
T ss_dssp             S---EEEEEE-SS-SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE---EE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred             e---EEEEEECCC-Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce---eEEEeccCCCcEeccEECCCCCEEE
Confidence            0   334444332 22 45678999999988721 12355899999988664   455543322 367899999999999


Q ss_pred             EEecCCCCCCCCceeEEEEeCCCCceEEe
Q 039497          500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRI  528 (642)
Q Consensus       500 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  528 (642)
                      ++....+      ..|.++|..+-++...
T Consensus       332 vS~~~~~------~~i~v~D~~Tl~~~~~  354 (369)
T PF02239_consen  332 VSVWDGN------GAIVVYDAKTLKEKKR  354 (369)
T ss_dssp             EEEE--T------TEEEEEETTTTEEEEE
T ss_pred             EEEecCC------CEEEEEECCCcEEEEE
Confidence            9877653      1699999988665443

...

>PTZ00421 coronin; Provisional

Probab=99.25  E-value=9.5e-09  Score=108.02  Aligned_cols=206  Identities=13%  Similarity=0.111  Sum_probs=131.7

Q ss_pred             CccEEcC-CCCEEEEEecCCCceeEEEEECCCCCe--------eEEee-cCCceeeeeecCCC-EEEEEEcCCCcccCCC
Q 039497          333 SFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKR--------WTLIK-DRTAFYNSWSPTEK-HVIYTSTGPIFQSERA  401 (642)
Q Consensus       333 ~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~--------~~l~~-~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~  401 (642)
                      ....|+| +++.|+..+.   ...|.++++..+..        ..+.. ...+..+.|+|++. .|+..+       .++
T Consensus        79 ~~v~fsP~d~~~LaSgS~---DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs-------~Dg  148 (493)
T PTZ00421         79 IDVAFNPFDPQKLFTASE---DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG-------ADM  148 (493)
T ss_pred             EEEEEcCCCCCEEEEEeC---CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe-------CCC
Confidence            4568999 8887777654   35666777654321        11211 45678899999875 555444       378


Q ss_pred             eEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497          402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD  481 (642)
Q Consensus       402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~  481 (642)
                      .++||++..        +.     ....+..+. ..+..+.|+|||+.|+..+.   +..|.+||+.+++.   +..+..
T Consensus       149 tVrIWDl~t--------g~-----~~~~l~~h~-~~V~sla~spdG~lLatgs~---Dg~IrIwD~rsg~~---v~tl~~  208 (493)
T PTZ00421        149 VVNVWDVER--------GK-----AVEVIKCHS-DQITSLEWNLDGSLLCTTSK---DKKLNIIDPRDGTI---VSSVEA  208 (493)
T ss_pred             EEEEEECCC--------Ce-----EEEEEcCCC-CceEEEEEECCCCEEEEecC---CCEEEEEECCCCcE---EEEEec
Confidence            999999965        22     344555454 66888999999998876653   34799999998875   455554


Q ss_pred             CCCc-ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497          482 GPWI-DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFT  559 (642)
Q Consensus       482 ~~~~-~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~  559 (642)
                      +... .....|.+++..|+..+....    ....|.+||+...... .........       ....+.|++|++.|+..
T Consensus       209 H~~~~~~~~~w~~~~~~ivt~G~s~s----~Dr~VklWDlr~~~~p~~~~~~d~~~-------~~~~~~~d~d~~~L~lg  277 (493)
T PTZ00421        209 HASAKSQRCLWAKRKDLIITLGCSKS----QQRQIMLWDTRKMASPYSTVDLDQSS-------ALFIPFFDEDTNLLYIG  277 (493)
T ss_pred             CCCCcceEEEEcCCCCeEEEEecCCC----CCCeEEEEeCCCCCCceeEeccCCCC-------ceEEEEEcCCCCEEEEE
Confidence            4332 345789999888776553321    2345999999754322 111111111       23456899999988877


Q ss_pred             EecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497          560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL  595 (642)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  595 (642)
                      ....+                .|..|++..+.+...
T Consensus       278 gkgDg----------------~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        278 SKGEG----------------NIRCFELMNERLTFC  297 (493)
T ss_pred             EeCCC----------------eEEEEEeeCCceEEE
Confidence            64222                688888887765443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.22  E-value=1.9e-10  Score=106.31  Aligned_cols=227  Identities=15%  Similarity=0.162  Sum_probs=161.6

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----------cCCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----------DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT  402 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  402 (642)
                      ....|||||++++..+.   .+-|-++|..+|+.+.-..          +..+..+.||.|...|+..+       .++.
T Consensus       217 EcA~FSPDgqyLvsgSv---DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs-------qDGk  286 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSV---DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS-------QDGK  286 (508)
T ss_pred             hheeeCCCCceEeeccc---cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC-------cCCc
Confidence            35689999998887543   3556667777776554222          55677889999999888776       3899


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG  482 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~  482 (642)
                      +.+|.+.+        |.     ..+++.......+..+.||.|+..|+-++.+   ..+.+.-+++|+.   ++.+..+
T Consensus       287 IKvWri~t--------G~-----ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD---~tvRiHGlKSGK~---LKEfrGH  347 (508)
T KOG0275|consen  287 IKVWRIET--------GQ-----CLRRFDRAHTKGVTCLSFSRDNSQILSASFD---QTVRIHGLKSGKC---LKEFRGH  347 (508)
T ss_pred             EEEEEEec--------ch-----HHHHhhhhhccCeeEEEEccCcchhhccccc---ceEEEeccccchh---HHHhcCc
Confidence            99999987        44     6777764444778899999999999877743   4677778888887   7778888


Q ss_pred             CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee-ecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497          483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH-VAGPEGSGDVDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                      ...++...|++||.+|+..+.++.        +.+|+.++.+...-. ..+..-       .+..+-.-|.+.--++..+
T Consensus       348 sSyvn~a~ft~dG~~iisaSsDgt--------vkvW~~KtteC~~Tfk~~~~d~-------~vnsv~~~PKnpeh~iVCN  412 (508)
T KOG0275|consen  348 SSYVNEATFTDDGHHIISASSDGT--------VKVWHGKTTECLSTFKPLGTDY-------PVNSVILLPKNPEHFIVCN  412 (508)
T ss_pred             cccccceEEcCCCCeEEEecCCcc--------EEEecCcchhhhhhccCCCCcc-------cceeEEEcCCCCceEEEEc
Confidence            888899999999999999998876        899998776532211 111111       3344544454433333444


Q ss_pred             cCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC---CCCCCCcEEecCCceEEeecC
Q 039497          562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN---GYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~---~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      +.                ..||.+++.|.-++..+.+   ++.......||.|.|+.....
T Consensus       413 rs----------------ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE  457 (508)
T KOG0275|consen  413 RS----------------NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE  457 (508)
T ss_pred             CC----------------CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence            33                2799999999877777764   344567789999998755433

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.22  E-value=7.8e-09  Score=93.60  Aligned_cols=272  Identities=14%  Similarity=0.135  Sum_probs=168.2

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      +.+.-+|.++|+. +.+...++|... .+.        ..-...++...+....++-+.++++.     +++...+.|||
T Consensus        16 iKyN~eGDLlFsc-aKD~~~~vw~s~-nGe--------rlGty~GHtGavW~~Did~~s~~liT-----GSAD~t~kLWD   80 (327)
T KOG0643|consen   16 IKYNREGDLLFSC-AKDSTPTVWYSL-NGE--------RLGTYDGHTGAVWCCDIDWDSKHLIT-----GSADQTAKLWD   80 (327)
T ss_pred             EEecCCCcEEEEe-cCCCCceEEEec-CCc--------eeeeecCCCceEEEEEecCCcceeee-----ccccceeEEEE
Confidence            6888899999987 667777888652 222        44555666656777777888888887     56667999999


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC--CCc
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF--ELN  353 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~  353 (642)
                      +.              .|+.|+....                 .          .......|+++|+++++..+.  ...
T Consensus        81 v~--------------tGk~la~~k~-----------------~----------~~Vk~~~F~~~gn~~l~~tD~~mg~~  119 (327)
T KOG0643|consen   81 VE--------------TGKQLATWKT-----------------N----------SPVKRVDFSFGGNLILASTDKQMGYT  119 (327)
T ss_pred             cC--------------CCcEEEEeec-----------------C----------CeeEEEeeccCCcEEEEEehhhcCcc
Confidence            93              3444444311                 0          011134789999998886653  233


Q ss_pred             eeEEEEECC-------CCCe-eEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccc
Q 039497          354 AGIKIAKSD-------GSKR-WTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIP  424 (642)
Q Consensus       354 ~~l~~~d~~-------~~~~-~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  424 (642)
                      ..|.++++.       +.++ ..+.. ...+..+.|+|-++.|++...       ++.+.+|++..         |.+  
T Consensus       120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe-------~G~is~~da~~---------g~~--  181 (327)
T KOG0643|consen  120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE-------DGSISIYDART---------GKE--  181 (327)
T ss_pred             eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC-------CCcEEEEEccc---------Cce--
Confidence            456666665       2332 22222 566788999999999988763       78999999875         211  


Q ss_pred             cceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497          425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR  504 (642)
Q Consensus       425 ~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~  504 (642)
                       .......+. ..+..+.+|||..+++..+.+   .+-.++|..+=+.   ++.... ...++..+++|--..++.....
T Consensus       182 -~v~s~~~h~-~~Ind~q~s~d~T~FiT~s~D---ttakl~D~~tl~v---~Kty~t-e~PvN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  182 -LVDSDEEHS-SKINDLQFSRDRTYFITGSKD---TTAKLVDVRTLEV---LKTYTT-ERPVNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             -eeechhhhc-cccccccccCCcceEEecccC---ccceeeeccceee---EEEeee-cccccceecccccceEEecCCc
Confidence             222222333 467789999999998876643   2556677766543   333322 2456778999988877776654


Q ss_pred             CCCCCCCceeEEEEeCCCCceEE-----eee------cCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          505 HNPDNVEAFSLYVIKPDGSGLRR-----IHV------AGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       505 ~~~~~~~~~~l~~~d~~~~~~~~-----l~~------~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      +.      ..+---+...++.+.     +..      .++.+       +++.++|+|||+... +..+.+
T Consensus       253 eA------~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-------PINsvAfhPdGksYs-SGGEDG  309 (327)
T KOG0643|consen  253 EA------MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-------PINSVAFHPDGKSYS-SGGEDG  309 (327)
T ss_pred             ee------eeeeeecccccchhhhHHHHHHHHHhcccccccc-------CcceeEECCCCcccc-cCCCCc
Confidence            32      122222222222110     000      14455       678999999998543 333333

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.22  E-value=1.5e-10  Score=110.43  Aligned_cols=264  Identities=14%  Similarity=0.057  Sum_probs=172.4

Q ss_pred             ccccceeecCCcEEEEEEeccCCceeeEEEEEe--------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497          244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL--------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL  315 (642)
Q Consensus       244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~--------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~  315 (642)
                      .+..+.|.|+|++|+.....+     ++.||+.        ...+...+....||++|.+++.....+-      ...|.
T Consensus        98 ~V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~------iKyWq  166 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGM------IKYWQ  166 (464)
T ss_pred             ceeeEEEcCCCceeEeecccc-----cEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCce------EEecc
Confidence            456688999999999954433     7888887        2356667788999999998876522211      22332


Q ss_pred             eeccCCCceeE-EeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEee-cCCceeeeeecCCCEEEEEEc
Q 039497          316 EPVASPVKELR-MLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIK-DRTAFYNSWSPTEKHVIYTST  392 (642)
Q Consensus       316 ~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~-~~~~~~~~~spdg~~l~~~~~  392 (642)
                      ...+.- .... ......+..+|||...+++..++   .+.|.++|..-.+. ++|.. ...+.++.|.|....|+..+.
T Consensus       167 pnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~Sd---Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk  242 (464)
T KOG0284|consen  167 PNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSD---DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK  242 (464)
T ss_pred             cchhhh-HHhhHhhhhhhheeccCCCCceeEEecC---CCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC
Confidence            222110 0000 01122356789997666655544   35677777654443 44433 567889999998887776653


Q ss_pred             CCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497          393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       393 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~  472 (642)
                             +.-+.+|+-..        +.     ....+..+. ..+..+.|+|++.+|+..+.+   ..+-++|+.+-+.
T Consensus       243 -------DnlVKlWDprS--------g~-----cl~tlh~HK-ntVl~~~f~~n~N~Llt~skD---~~~kv~DiR~mkE  298 (464)
T KOG0284|consen  243 -------DNLVKLWDPRS--------GS-----CLATLHGHK-NTVLAVKFNPNGNWLLTGSKD---QSCKVFDIRTMKE  298 (464)
T ss_pred             -------CceeEeecCCC--------cc-----hhhhhhhcc-ceEEEEEEcCCCCeeEEccCC---ceEEEEehhHhHH
Confidence                   55888888765        33     556666666 778889999999999988743   4788889875333


Q ss_pred             ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC
Q 039497          473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD  552 (642)
Q Consensus       473 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D  552 (642)
                         +...-.+...+....|+|=-.-|+.+.....       .|+.+.+...++.......+.+       .+.+++|.|=
T Consensus       299 ---l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg-------svvh~~v~~~~p~~~i~~AHd~-------~iwsl~~hPl  361 (464)
T KOG0284|consen  299 ---LFTYRGHKKDVTSLTWHPLNESLFTSGGSDG-------SVVHWVVGLEEPLGEIPPAHDG-------EIWSLAYHPL  361 (464)
T ss_pred             ---HHHhhcchhhheeeccccccccceeeccCCC-------ceEEEeccccccccCCCccccc-------ceeeeecccc
Confidence               4555556677888999997666666555432       2677766544443333344555       6789999999


Q ss_pred             CCEEEEEEecC
Q 039497          553 GEWLLFTANLG  563 (642)
Q Consensus       553 g~~l~~~~~~~  563 (642)
                      |..|+..+++.
T Consensus       362 Ghil~tgsnd~  372 (464)
T KOG0284|consen  362 GHILATGSNDR  372 (464)
T ss_pred             ceeEeecCCCc
Confidence            98887766654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=2.4e-08  Score=99.67  Aligned_cols=321  Identities=14%  Similarity=0.152  Sum_probs=178.9

Q ss_pred             ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec--CCC-cce
Q 039497          121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE--RGG-WPT  197 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~~-~~~  197 (642)
                      .+++.+...+. ..|+..........|||-|.+|..-.-.. ++ .+.......+-+|+++++..+--...  ..+ .+.
T Consensus        56 ~v~i~~~~~~~-~~lt~~~~~~~~L~fSP~g~yL~T~e~~~-i~-~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~q  132 (566)
T KOG2315|consen   56 VVKVFEIATLK-VVLCVELKKTYDLLFSPKGNYLLTWEPWA-IY-GPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQ  132 (566)
T ss_pred             eEEEEEccCCc-EEEEeccceeeeeeecccccccccccccc-cc-cCCCCCCCceeeeeeccceehhheehhhhcCcccc
Confidence            56776766664 44444444556689999999998432111 11 11123346788888888543222221  112 469


Q ss_pred             EeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCC--cEEEEEEeccCCceeeEEEEE
Q 039497          198 WSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDG--KRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       198 wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG--~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      |+.|..+.+--  ..+..++|..+-..+        ...++-..+  +..+.+||.+  -.+++-.-..++....+++|.
T Consensus       133 fs~dEsl~arl--v~nev~f~~~~~f~~--------~~~kl~~~~--i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~  200 (566)
T KOG2315|consen  133 FSIDESLAARL--VSNEVQFYDLGSFKT--------IQHKLSVSG--ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYK  200 (566)
T ss_pred             cccchhhhhhh--hcceEEEEecCCccc--------eeeeeeccc--eeeEEecCCCCCceEEEEccCCCCCCcEEEEec
Confidence            99996433221  134344544433222        333444333  4455666653  445554444555666666665


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec------
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD------  349 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------  349 (642)
                      ........                                     ....-.....+-..+.|++-|+-|+....      
T Consensus       201 ~~~~~~~~-------------------------------------~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt  243 (566)
T KOG2315|consen  201 YPEEGQHQ-------------------------------------PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT  243 (566)
T ss_pred             cccccccc-------------------------------------hhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence            52110000                                     00000011111123467776665555221      


Q ss_pred             ---CCCceeEEEEECCCCCee-EEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcccc
Q 039497          350 ---FELNAGIKIAKSDGSKRW-TLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC  425 (642)
Q Consensus       350 ---~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  425 (642)
                         .-+...||+++.++...+ ++...+.++++.|+|+|+.++++-.     ---..+.|++++-  +            
T Consensus       244 n~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG-----fMPAkvtifnlr~--~------------  304 (566)
T KOG2315|consen  244 NASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYG-----FMPAKVTIFNLRG--K------------  304 (566)
T ss_pred             CccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEe-----cccceEEEEcCCC--C------------
Confidence               125678999999854432 3333788999999999999887753     2245666666633  1            


Q ss_pred             ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-CcccceeEecCCCEEEEEecC
Q 039497          426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-WIDTMPSWSPKGDLIAFSSNR  504 (642)
Q Consensus       426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-~~~~~~~~spdG~~l~~~~~~  504 (642)
                      ....+..   +.-..+.|+|.|+.|+++...+-.+++-+||+.+-      +.|.... .....+.|+|||.+|+.+...
T Consensus       305 ~v~df~e---gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~------K~i~~~~a~~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  305 PVFDFPE---GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR------KLIAKFKAANTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             EeEeCCC---CCccceEECCCCCEEEEeecCCCCCceEEEeccch------hhccccccCCceEEEEcCCCcEEEEEecc
Confidence            3333333   33446889999999999998776778889998863      3444322 233567999999999888765


Q ss_pred             CCCCCCCceeEEEEeCCCC
Q 039497          505 HNPDNVEAFSLYVIKPDGS  523 (642)
Q Consensus       505 ~~~~~~~~~~l~~~d~~~~  523 (642)
                      ..-+  -.+.+.+|+..|.
T Consensus       376 PRlr--vdNg~KiwhytG~  392 (566)
T KOG2315|consen  376 PRLR--VDNGIKIWHYTGS  392 (566)
T ss_pred             ccEE--ecCCeEEEEecCc
Confidence            3211  1233555555543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.21  E-value=1.8e-09  Score=99.38  Aligned_cols=175  Identities=15%  Similarity=0.173  Sum_probs=110.2

Q ss_pred             eeeeeecCCCEEEEEEcCCCccc---CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497          376 FYNSWSPTEKHVIYTSTGPIFQS---ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       376 ~~~~~spdg~~l~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      ..+.|+|+|+.|++......-..   --+...|+.++.  .     +.     ....+.....+.+..++|+|+|+.+++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~--~-----~~-----~~~~i~l~~~~~I~~~~WsP~g~~fav   76 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE--K-----NI-----PVESIELKKEGPIHDVAWSPNGNEFAV   76 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec--C-----CC-----ccceeeccCCCceEEEEECcCCCEEEE
Confidence            46789999999988765210001   123567777765  2     22     344443332245888999999999987


Q ss_pred             EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497          453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG  532 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  532 (642)
                      .... ....+.++|++ ++.   +..+..  .....+.|||+|++|++++..+     ....|.+||+...  +.+....
T Consensus        77 i~g~-~~~~v~lyd~~-~~~---i~~~~~--~~~n~i~wsP~G~~l~~~g~~n-----~~G~l~~wd~~~~--~~i~~~~  142 (194)
T PF08662_consen   77 IYGS-MPAKVTLYDVK-GKK---IFSFGT--QPRNTISWSPDGRFLVLAGFGN-----LNGDLEFWDVRKK--KKISTFE  142 (194)
T ss_pred             EEcc-CCcccEEEcCc-ccE---eEeecC--CCceEEEECCCCCEEEEEEccC-----CCcEEEEEECCCC--EEeeccc
Confidence            7642 22378888887 443   455543  3446789999999999987543     2235899999743  3343323


Q ss_pred             CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497          533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL  595 (642)
Q Consensus       533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  595 (642)
                      +.        ....+.|||||++|+.........           ....+.+|+..|..+.+.
T Consensus       143 ~~--------~~t~~~WsPdGr~~~ta~t~~r~~-----------~dng~~Iw~~~G~~l~~~  186 (194)
T PF08662_consen  143 HS--------DATDVEWSPDGRYLATATTSPRLR-----------VDNGFKIWSFQGRLLYKK  186 (194)
T ss_pred             cC--------cEEEEEEcCCCCEEEEEEecccee-----------ccccEEEEEecCeEeEec
Confidence            22        357899999999999876542110           112556667777655443

>PTZ00421 coronin; Provisional

Probab=99.21  E-value=5.1e-09  Score=110.03  Aligned_cols=199  Identities=11%  Similarity=0.094  Sum_probs=127.8

Q ss_pred             cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeE
Q 039497          372 DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL  450 (642)
Q Consensus       372 ~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l  450 (642)
                      .+.+..+.|+| |++.|+..+.       ++.+++|++..  .+.    ..........+..+. ..+..+.|+|++..+
T Consensus        75 ~~~V~~v~fsP~d~~~LaSgS~-------DgtIkIWdi~~--~~~----~~~~~~~l~~L~gH~-~~V~~l~f~P~~~~i  140 (493)
T PTZ00421         75 EGPIIDVAFNPFDPQKLFTASE-------DGTIMGWGIPE--EGL----TQNISDPIVHLQGHT-KKVGIVSFHPSAMNV  140 (493)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeC-------CCEEEEEecCC--Ccc----ccccCcceEEecCCC-CcEEEEEeCcCCCCE
Confidence            56788999999 8888877763       78999999965  200    000000234555555 677889999987544


Q ss_pred             EEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       451 ~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      ++++..  +..|.+||+.+++.   +..+..+...+..++|+|||+.|+..+.++.        |.+||+.+++...-..
T Consensus       141 LaSgs~--DgtVrIWDl~tg~~---~~~l~~h~~~V~sla~spdG~lLatgs~Dg~--------IrIwD~rsg~~v~tl~  207 (493)
T PTZ00421        141 LASAGA--DMVVNVWDVERGKA---VEVIKCHSDQITSLEWNLDGSLLCTTSKDKK--------LNIIDPRDGTIVSSVE  207 (493)
T ss_pred             EEEEeC--CCEEEEEECCCCeE---EEEEcCCCCceEEEEEECCCCEEEEecCCCE--------EEEEECCCCcEEEEEe
Confidence            444433  34799999998875   5666666667888999999998888876654        9999998776533222


Q ss_pred             cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeec-cCC-CCCCCCcEE
Q 039497          531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRL-TWN-GYENGTPAW  607 (642)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l-t~~-~~~~~~~~~  607 (642)
                       .+.+.      ....+.|.+++..|+.+......             ...|.+||+.... +... ..+ ......+.|
T Consensus       208 -~H~~~------~~~~~~w~~~~~~ivt~G~s~s~-------------Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~  267 (493)
T PTZ00421        208 -AHASA------KSQRCLWAKRKDLIITLGCSKSQ-------------QRQIMLWDTRKMASPYSTVDLDQSSALFIPFF  267 (493)
T ss_pred             -cCCCC------cceEEEEcCCCCeEEEEecCCCC-------------CCeEEEEeCCCCCCceeEeccCCCCceEEEEE
Confidence             22220      22357899998887765532211             2378888886432 2222 111 123345789


Q ss_pred             ecCCceEEee
Q 039497          608 HPGNQLDLGK  617 (642)
Q Consensus       608 s~dg~~~~~~  617 (642)
                      ++|+.+++..
T Consensus       268 d~d~~~L~lg  277 (493)
T PTZ00421        268 DEDTNLLYIG  277 (493)
T ss_pred             cCCCCEEEEE
Confidence            9999776543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.21  E-value=2e-07  Score=91.77  Aligned_cols=183  Identities=17%  Similarity=0.190  Sum_probs=112.9

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ....|.|.| .|+...   ..+..+++|.++....++-. +..+..+.|+|||..|++.+.       ++.++||.++. 
T Consensus       411 ~~~~fhpsg-~va~Gt---~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~-------d~~iyiy~Vs~-  478 (626)
T KOG2106|consen  411 ECADFHPSG-VVAVGT---ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH-------DNHIYIYRVSA-  478 (626)
T ss_pred             eEeeccCcc-eEEEee---ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC-------CCeEEEEEECC-
Confidence            456788888 565532   34677888988865555544 566788999999999999985       78999999987 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC---------
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG---------  482 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~---------  482 (642)
                       +     +.     +..++.......+.++.||+|+++|...+   ++.+|..|...  ..    .++++.         
T Consensus       479 -~-----g~-----~y~r~~k~~gs~ithLDwS~Ds~~~~~~S---~d~eiLyW~~~--~~----~~~ts~kDvkW~t~~  538 (626)
T KOG2106|consen  479 -N-----GR-----KYSRVGKCSGSPITHLDWSSDSQFLVSNS---GDYEILYWKPS--EC----KQITSVKDVKWATYT  538 (626)
T ss_pred             -C-----Cc-----EEEEeeeecCceeEEeeecCCCceEEecc---CceEEEEEccc--cC----cccceecceeeeeeE
Confidence             3     22     34444333324677899999999987665   56677777432  21    232221         


Q ss_pred             ------------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEc
Q 039497          483 ------------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS  550 (642)
Q Consensus       483 ------------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S  550 (642)
                                  ...+...+-|.+.+.++....      .+..+||.+.-..-...-....++..       .+..++|+
T Consensus       539 c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd------~g~v~lf~yPc~s~rA~~he~~ghs~-------~vt~V~Fl  605 (626)
T KOG2106|consen  539 CTLGFEVFGGSDGTDINAVARSHCEKLLASGDD------FGKVHLFSYPCSSPRAPSHEYGGHSS-------HVTNVAFL  605 (626)
T ss_pred             EEEEEEEecccCCchHHHhhhhhhhhhhhcccc------CceEEEEccccCCCcccceeeccccc-------eeEEEEEe
Confidence                        111122233444443333322      25677887776543332222234444       67788998


Q ss_pred             CCCCEEEEEE
Q 039497          551 ADGEWLLFTA  560 (642)
Q Consensus       551 ~Dg~~l~~~~  560 (642)
                      -+-..++.+.
T Consensus       606 ~~d~~li~tg  615 (626)
T KOG2106|consen  606 CKDSHLISTG  615 (626)
T ss_pred             eCCceEEecC
Confidence            7777666555

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=3.2e-08  Score=98.86  Aligned_cols=315  Identities=16%  Similarity=0.143  Sum_probs=180.0

Q ss_pred             cccceeecCCcEEEEEEeccCCceeeEEEEEeecC------CCCcccCCeecCCCCEEEEEEeecCCCC----CCcccce
Q 039497          245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLN------PNFHHYNPFVSANSEFIGYHRFRGESTE----GQSTIPH  314 (642)
Q Consensus       245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~spDg~~l~~~~~~~~~~~----~~~~~~~  314 (642)
                      ....++|++|+.+++....      .+++++....      .........+||-|.+|...........    +.....|
T Consensus        37 ~~v~~~S~~G~lfA~~~~~------~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~  110 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSDNQ------VVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY  110 (566)
T ss_pred             ceeEEEcCCCcEEEEEcCC------eEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence            4456789999999996433      4556655211      1124566788888888766432221110    1111122


Q ss_pred             EeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE-eecCCceeeeeecCCCEEEEEEcC
Q 039497          315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL-IKDRTAFYNSWSPTEKHVIYTSTG  393 (642)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~  393 (642)
                      -....-....++.....+..+.||+|....+...    .+.++.++..+.....- .....+..+.+||-+..-.++...
T Consensus       111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv----~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyv  186 (566)
T KOG2315|consen  111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLV----SNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYV  186 (566)
T ss_pred             eeccceehhheehhhhcCcccccccchhhhhhhh----cceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEc
Confidence            1111111111222222335789999998666643    46788888776432221 125677888888864433333322


Q ss_pred             CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC---------CCceeEEE
Q 039497          394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR---------SGHKNLFV  464 (642)
Q Consensus       394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~---------~g~~~l~~  464 (642)
                      +.-.+....++||.+..        .+..-+-..+.+...   .--.+.|.+-|.-|+.....         -|...||+
T Consensus       187 Pe~kGaPa~vri~~~~~--------~~~~~~~a~ksFFka---dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyl  255 (566)
T KOG2315|consen  187 PEKKGAPASVRIYKYPE--------EGQHQPVANKSFFKA---DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYL  255 (566)
T ss_pred             cCCCCCCcEEEEecccc--------ccccchhhhcccccc---ceeEEEeccCCceEEEEEEEeecCCCccccccceEEE
Confidence            21122345677777754        121000011111111   12246788888876654321         25669999


Q ss_pred             EECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497          465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI  544 (642)
Q Consensus       465 ~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~  544 (642)
                      ++++ |+.  ....|.. .+.++.+.|+|+|+.+++...-      ++..+-++|+++.-.- ....+          .-
T Consensus       256 l~t~-g~s--~~V~L~k-~GPVhdv~W~~s~~EF~VvyGf------MPAkvtifnlr~~~v~-df~eg----------pR  314 (566)
T KOG2315|consen  256 LATQ-GES--VSVPLLK-EGPVHDVTWSPSGREFAVVYGF------MPAKVTIFNLRGKPVF-DFPEG----------PR  314 (566)
T ss_pred             EEec-Cce--EEEecCC-CCCceEEEECCCCCEEEEEEec------ccceEEEEcCCCCEeE-eCCCC----------Cc
Confidence            9998 542  1344543 4678899999999998877654      4556889998764332 22222          33


Q ss_pred             cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC-CCCCCcEEecCCceEEee
Q 039497          545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG-YENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~dg~~~~~~  617 (642)
                      ..+.|+|-|+.|++..-..              ..+++-+||...  .+.|.... .+..-..|+|||++|++.
T Consensus       315 N~~~fnp~g~ii~lAGFGN--------------L~G~mEvwDv~n--~K~i~~~~a~~tt~~eW~PdGe~flTA  372 (566)
T KOG2315|consen  315 NTAFFNPHGNIILLAGFGN--------------LPGDMEVWDVPN--RKLIAKFKAANTTVFEWSPDGEYFLTA  372 (566)
T ss_pred             cceEECCCCCEEEEeecCC--------------CCCceEEEeccc--hhhccccccCCceEEEEcCCCcEEEEE
Confidence            5789999999888876543              356888888766  23333322 233567999999999875

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.20  E-value=3.1e-10  Score=110.86  Aligned_cols=245  Identities=15%  Similarity=0.102  Sum_probs=171.6

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCee-EEe------ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-TLI------KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-~l~------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      ..+|...++++.    .++..|-+||+.....+ .+.      .+..+.....+|||+.|++...       ...+.||+
T Consensus       425 vtIS~~trhVyT----gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe-------astlsiWD  493 (705)
T KOG0639|consen  425 VTISNPTRHVYT----GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE-------ASTLSIWD  493 (705)
T ss_pred             EEecCCcceeEe----cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc-------cceeeeee
Confidence            356666666555    45677777787654322 221      2567888999999999998763       67899999


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT  487 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~  487 (642)
                      +...+.      .     ....|+... -....++.|||.+ ++|+.-.+|  .|.+||+.....   ++++..+.....
T Consensus       494 LAapTp------r-----ikaeltssa-paCyALa~spDak-vcFsccsdG--nI~vwDLhnq~~---VrqfqGhtDGas  555 (705)
T KOG0639|consen  494 LAAPTP------R-----IKAELTSSA-PACYALAISPDAK-VCFSCCSDG--NIAVWDLHNQTL---VRQFQGHTDGAS  555 (705)
T ss_pred             ccCCCc------c-----hhhhcCCcc-hhhhhhhcCCccc-eeeeeccCC--cEEEEEccccee---eecccCCCCCce
Confidence            976111      0     222333332 3455689999985 677776555  788899987665   788888877888


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      .+..|+||..|+...-++.        |..||+..+..  +.......       .+.++...|.+.||++.-...    
T Consensus       556 cIdis~dGtklWTGGlDnt--------vRcWDlregrq--lqqhdF~S-------QIfSLg~cP~~dWlavGMens----  614 (705)
T KOG0639|consen  556 CIDISKDGTKLWTGGLDNT--------VRCWDLREGRQ--LQQHDFSS-------QIFSLGYCPTGDWLAVGMENS----  614 (705)
T ss_pred             eEEecCCCceeecCCCccc--------eeehhhhhhhh--hhhhhhhh-------hheecccCCCccceeeecccC----
Confidence            8999999999988877664        89999976543  32223333       567888999999999876533    


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCCc-ccccceeee--e--ccc-ceeccC
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLED-DIGDKLRGQ--F--DEP-LWISCD  641 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~~-~~~~~~~~~--~--~~~-~~~~~~  641 (642)
                                   ++++....+.+..+|.-+..-+.++.|++=|+||++-....- ..=.-+||+  |  .|. ..++||
T Consensus       615 -------------~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCD  681 (705)
T KOG0639|consen  615 -------------NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD  681 (705)
T ss_pred             -------------cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeee
Confidence                         889999899889999998888899999999999987532210 112224444  3  233 479998


Q ss_pred             C
Q 039497          642 F  642 (642)
Q Consensus       642 ~  642 (642)
                      +
T Consensus       682 I  682 (705)
T KOG0639|consen  682 I  682 (705)
T ss_pred             e
Confidence            5

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.19  E-value=6.8e-09  Score=102.15  Aligned_cols=199  Identities=16%  Similarity=0.098  Sum_probs=115.8

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      ...|+|+.+..+.....++.-.||-++-...+ .++..       .-.+..-+|+|||+.|+....       ++.+++|
T Consensus       273 ~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~-------DGSIQ~W  344 (641)
T KOG0772|consen  273 CGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCL-------DGSIQIW  344 (641)
T ss_pred             ccccccCcccceEEecCCCcEEEEecCCchhh-eeEEeeccCCCcccCceeeecCCCcchhhhccc-------CCceeee
Confidence            44899998887776655555555544432222 33332       123556799999999887764       7899999


Q ss_pred             EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCC
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPW  484 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~  484 (642)
                      +...  -      ...-....+.-.... ..+..++||+||++|+..+.   +..|.+||+..-+.  .+...+.  ...
T Consensus       345 ~~~~--~------~v~p~~~vk~AH~~g-~~Itsi~FS~dg~~LlSRg~---D~tLKvWDLrq~kk--pL~~~tgL~t~~  410 (641)
T KOG0772|consen  345 DKGS--R------TVRPVMKVKDAHLPG-QDITSISFSYDGNYLLSRGF---DDTLKVWDLRQFKK--PLNVRTGLPTPF  410 (641)
T ss_pred             ecCC--c------ccccceEeeeccCCC-CceeEEEeccccchhhhccC---CCceeeeecccccc--chhhhcCCCccC
Confidence            9633  1      100000112222222 36788999999999986664   44799999875442  0121121  123


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      .-..+.||||.+.|+....-.+.  .....|+.+|..+=....-.  ....      -.+....|.|-=..|+..+.+++
T Consensus       411 ~~tdc~FSPd~kli~TGtS~~~~--~~~g~L~f~d~~t~d~v~ki--~i~~------aSvv~~~WhpkLNQi~~gsgdG~  480 (641)
T KOG0772|consen  411 PGTDCCFSPDDKLILTGTSAPNG--MTAGTLFFFDRMTLDTVYKI--DIST------ASVVRCLWHPKLNQIFAGSGDGT  480 (641)
T ss_pred             CCCccccCCCceEEEecccccCC--CCCceEEEEeccceeeEEEe--cCCC------ceEEEEeecchhhheeeecCCCc
Confidence            34678999999877666554332  13335888887553332211  1111      04556678776666666666653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.18  E-value=2.8e-08  Score=104.26  Aligned_cols=260  Identities=16%  Similarity=0.130  Sum_probs=162.4

Q ss_pred             cceeecCCcEEEEEEeccCCceeeEEEEEeecCCC-------CcccCCeecCCCCEEEEEEeecCCC---CCCcccceEe
Q 039497          247 TPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN-------FHHYNPFVSANSEFIGYHRFRGEST---EGQSTIPHLE  316 (642)
Q Consensus       247 ~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~spDg~~l~~~~~~~~~~---~~~~~~~~~~  316 (642)
                      ...+||||++|+|.....|+....++++|+..+..       .....+.|++||+.++|.+.+....   .+....++..
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~  207 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH  207 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence            45679999999999999999999999999943321       1111279999999999998766422   1113456666


Q ss_pred             eccCCCce-eEEeeeCC--C---ccEEcCCCCEEEEEecCCCc-eeEEEEECCCC-----CeeEEeec-CCceeeeeecC
Q 039497          317 PVASPVKE-LRMLRLNG--S---FPSFSPDGGLIVFNHDFELN-AGIKIAKSDGS-----KRWTLIKD-RTAFYNSWSPT  383 (642)
Q Consensus       317 ~~~~~~~~-~~~~~~~~--~---~~~~spdg~~l~~~~~~~~~-~~l~~~d~~~~-----~~~~l~~~-~~~~~~~~spd  383 (642)
                      .+...... ..+.....  .   .+..|+||++|++....... ..+|++++..+     ..+.+... ....... ...
T Consensus       208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v-~~~  286 (414)
T PF02897_consen  208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV-DHH  286 (414)
T ss_dssp             ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE-EEE
T ss_pred             ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE-Ecc
Confidence            76655443 22222222  1   34679999998886665555 89999999875     44555542 2222222 223


Q ss_pred             CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE-EccccCCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497          384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK-ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL  462 (642)
Q Consensus       384 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l  462 (642)
                      |..+++.++     .+....+|+.++.  +     .. ... ... .+..+. ....--.++..+++|++...+++..+|
T Consensus       287 ~~~~yi~Tn-----~~a~~~~l~~~~l--~-----~~-~~~-~~~~~l~~~~-~~~~l~~~~~~~~~Lvl~~~~~~~~~l  351 (414)
T PF02897_consen  287 GDRLYILTN-----DDAPNGRLVAVDL--A-----DP-SPA-EWWTVLIPED-EDVSLEDVSLFKDYLVLSYRENGSSRL  351 (414)
T ss_dssp             TTEEEEEE------TT-TT-EEEEEET--T-----ST-SGG-GEEEEEE--S-SSEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred             CCEEEEeeC-----CCCCCcEEEEecc--c-----cc-ccc-cceeEEcCCC-CceeEEEEEEECCEEEEEEEECCccEE
Confidence            777777775     3456677888877  2     11 100 122 344333 322333556678899998888899999


Q ss_pred             EEEECC-CCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          463 FVLDAV-NGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       463 ~~~d~~-~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      .++++. +...    ..+.- ..+.+......++++.+.|....-.    .+..+|.+|+++++.+.+..
T Consensus       352 ~v~~~~~~~~~----~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~----~P~~~y~~d~~t~~~~~~k~  413 (414)
T PF02897_consen  352 RVYDLDDGKES----REIPLPEAGSVSGVSGDFDSDELRFSYSSFT----TPPTVYRYDLATGELTLLKQ  413 (414)
T ss_dssp             EEEETT-TEEE----EEEESSSSSEEEEEES-TT-SEEEEEEEETT----EEEEEEEEETTTTCEEEEEE
T ss_pred             EEEECCCCcEE----eeecCCcceEEeccCCCCCCCEEEEEEeCCC----CCCEEEEEECCCCCEEEEEe
Confidence            999998 4442    33332 2233445566778888888877654    67899999999999887753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.17  E-value=7.6e-09  Score=93.92  Aligned_cols=192  Identities=20%  Similarity=0.266  Sum_probs=128.4

Q ss_pred             ccEEcCC-CCEEEEEecCCCceeEEEEECCCCCeeEEe---e---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497          334 FPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSKRWTLI---K---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       334 ~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~---~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      ..+|+|- |..|+..   .....|.+++..++......   .   ...+..++|+|.|++|+..+.       +....||
T Consensus        19 ~~awhp~~g~ilAsc---g~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF-------D~t~~Iw   88 (312)
T KOG0645|consen   19 SVAWHPGKGVILASC---GTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF-------DATVVIW   88 (312)
T ss_pred             EEEeccCCceEEEee---cCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec-------cceEEEe
Confidence            4588998 7644443   33467777777754333222   1   457889999999999999886       5677777


Q ss_pred             EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcc
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID  486 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~  486 (642)
                      .-..  .      .=+   ....|..++ ..+..++||++|++|+..+.   ...+|+|.++.+..-.-...|..+...+
T Consensus        89 ~k~~--~------efe---cv~~lEGHE-nEVK~Vaws~sG~~LATCSR---DKSVWiWe~deddEfec~aVL~~HtqDV  153 (312)
T KOG0645|consen   89 KKED--G------EFE---CVATLEGHE-NEVKCVAWSASGNYLATCSR---DKSVWIWEIDEDDEFECIAVLQEHTQDV  153 (312)
T ss_pred             ecCC--C------cee---EEeeeeccc-cceeEEEEcCCCCEEEEeeC---CCeEEEEEecCCCcEEEEeeeccccccc
Confidence            6432  1      100   445555565 77888999999999998874   3479999987554311234567788889


Q ss_pred             cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEee-ecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRIH-VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~-~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      ..+.|+|....|+-.+.++.        |.+|.-. .+....+. ..+..+       -+..+.|.+.|.+|+..+++..
T Consensus       154 K~V~WHPt~dlL~S~SYDnT--------Ik~~~~~~dddW~c~~tl~g~~~-------TVW~~~F~~~G~rl~s~sdD~t  218 (312)
T KOG0645|consen  154 KHVIWHPTEDLLFSCSYDNT--------IKVYRDEDDDDWECVQTLDGHEN-------TVWSLAFDNIGSRLVSCSDDGT  218 (312)
T ss_pred             cEEEEcCCcceeEEeccCCe--------EEEEeecCCCCeeEEEEecCccc-------eEEEEEecCCCceEEEecCCcc
Confidence            99999998776665555543        5555544 44443322 234443       4788999999999998888765


Q ss_pred             c
Q 039497          565 V  565 (642)
Q Consensus       565 ~  565 (642)
                      .
T Consensus       219 v  219 (312)
T KOG0645|consen  219 V  219 (312)
T ss_pred             e
Confidence            4

>PTZ00420 coronin; Provisional

Probab=99.17  E-value=2.7e-08  Score=105.24  Aligned_cols=221  Identities=10%  Similarity=0.056  Sum_probs=134.6

Q ss_pred             CccEEcCC-CCEEEEEecCCCceeEEEEECCCCCe--e-------EEee-cCCceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497          333 SFPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSKR--W-------TLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERA  401 (642)
Q Consensus       333 ~~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~~--~-------~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  401 (642)
                      ....|+|+ ++.|+..+.   ...|.++++..+..  .       .+.. ...+..+.|+|++..++.+.      ..++
T Consensus        78 ~~lafsP~~~~lLASgS~---DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg------S~Dg  148 (568)
T PTZ00420         78 LDLQFNPCFSEILASGSE---DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS------GFDS  148 (568)
T ss_pred             EEEEEcCCCCCEEEEEeC---CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE------eCCC
Confidence            35689997 666666543   34666777654321  1       1111 45688999999998776554      2378


Q ss_pred             eEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497          402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD  481 (642)
Q Consensus       402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~  481 (642)
                      .++||++..        +.     ....+. .. ..+..+.|+|||+.|+.++.   ...|.+||+.+++.   +..+..
T Consensus       149 tIrIWDl~t--------g~-----~~~~i~-~~-~~V~SlswspdG~lLat~s~---D~~IrIwD~Rsg~~---i~tl~g  207 (568)
T PTZ00420        149 FVNIWDIEN--------EK-----RAFQIN-MP-KKLSSLKWNIKGNLLSGTCV---GKHMHIIDPRKQEI---ASSFHI  207 (568)
T ss_pred             eEEEEECCC--------Cc-----EEEEEe-cC-CcEEEEEECCCCCEEEEEec---CCEEEEEECCCCcE---EEEEec
Confidence            999999965        22     233333 22 46778999999998876652   23799999998875   555554


Q ss_pred             CCCcccc-----eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-CceEEe-eecCCCCCCCcccccccceEEcCC-C
Q 039497          482 GPWIDTM-----PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRRI-HVAGPEGSGDVDRERINHVCFSAD-G  553 (642)
Q Consensus       482 ~~~~~~~-----~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l-~~~~~~~~~~~~~~~~~~~~~S~D-g  553 (642)
                      +.+....     ..|++|+++|+..+.+..    ...+|.+||+.. ++.... ......+        ...+.|.++ |
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~----~~R~VkLWDlr~~~~pl~~~~ld~~~~--------~L~p~~D~~tg  275 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKN----NMREMKLWDLKNTTSALVTMSIDNASA--------PLIPHYDESTG  275 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCC----CccEEEEEECCCCCCceEEEEecCCcc--------ceEEeeeCCCC
Confidence            4433211     235689998888776542    234699999974 333222 2211111        123455455 5


Q ss_pred             CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC--CCCCCcEEecCCc
Q 039497          554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG--YENGTPAWHPGNQ  612 (642)
Q Consensus       554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~--~~~~~~~~s~dg~  612 (642)
                      ..++....++                 .|++|++..+.+..|....  .....++|.|...
T Consensus       276 ~l~lsGkGD~-----------------tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        276 LIYLIGKGDG-----------------NCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             CEEEEEECCC-----------------eEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence            5444444333                 6888888777777776533  2235678888753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.17  E-value=1.6e-09  Score=105.84  Aligned_cols=274  Identities=12%  Similarity=0.073  Sum_probs=175.6

Q ss_pred             cceEee-CCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          195 WPTWSG-DSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       195 ~~~wsp-dg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      .+.|.| .+.++.+. ..++...||-+--++.        ..+.+..+...+..+.|+.+|..++.++-+.     .+.+
T Consensus       219 ai~~fp~~~hLlLS~-gmD~~vklW~vy~~~~--------~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~-----~lKl  284 (503)
T KOG0282|consen  219 AIQWFPKKGHLLLSG-GMDGLVKLWNVYDDRR--------CLRTFKGHRKPVRDASFNNCGTSFLSASFDR-----FLKL  284 (503)
T ss_pred             hhhhccceeeEEEec-CCCceEEEEEEecCcc--------eehhhhcchhhhhhhhccccCCeeeeeecce-----eeee
Confidence            468999 55666665 6677555554333333        5566677777788999999999999865444     8999


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  353 (642)
                      ||++++..                ..+...                         ........+.||+..+++++.  ..
T Consensus       285 wDtETG~~----------------~~~f~~-------------------------~~~~~cvkf~pd~~n~fl~G~--sd  321 (503)
T KOG0282|consen  285 WDTETGQV----------------LSRFHL-------------------------DKVPTCVKFHPDNQNIFLVGG--SD  321 (503)
T ss_pred             eccccceE----------------EEEEec-------------------------CCCceeeecCCCCCcEEEEec--CC
Confidence            99855320                000000                         011124478999976777653  35


Q ss_pred             eeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ..|..+|..+++..+-..  -+.+..+.|-++|++++.++.       +..++||....  .      -     ..+.+.
T Consensus       322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD-------dks~riWe~~~--~------v-----~ik~i~  381 (503)
T KOG0282|consen  322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD-------DKSVRIWENRI--P------V-----PIKNIA  381 (503)
T ss_pred             CcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc-------CccEEEEEcCC--C------c-----cchhhc
Confidence            678889998888554433  456888999999999988874       67999999865  1      1     333343


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCCcccceeEecCCCEEEEEecCCCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPWIDTMPSWSPKGDLIAFSSNRHNPDN  509 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~  509 (642)
                      .........+..+|++++++..+..+   .|+++.+.-.-....-+....  ..+....+.|||||++|+....++.   
T Consensus       382 ~~~~hsmP~~~~~P~~~~~~aQs~dN---~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~---  455 (503)
T KOG0282|consen  382 DPEMHTMPCLTLHPNGKWFAAQSMDN---YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK---  455 (503)
T ss_pred             chhhccCcceecCCCCCeehhhccCc---eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc---
Confidence            33323455678999999998777543   566665431100000011221  2345566799999999988887765   


Q ss_pred             CCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          510 VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       510 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                           ++.||-++-++..... .+..       .+..+.|.|-....+.++.-.+
T Consensus       456 -----v~~wdwkt~kl~~~lk-ah~~-------~ci~v~wHP~e~Skvat~~w~G  497 (503)
T KOG0282|consen  456 -----VNFWDWKTTKLVSKLK-AHDQ-------PCIGVDWHPVEPSKVATCGWDG  497 (503)
T ss_pred             -----EEEeechhhhhhhccc-cCCc-------ceEEEEecCCCcceeEecccCc
Confidence                 9999987655443333 2233       5678899998777666665544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=1e-06  Score=92.73  Aligned_cols=460  Identities=12%  Similarity=0.116  Sum_probs=247.6

Q ss_pred             eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCE--EEEEEeccCCC
Q 039497           36 EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNK--LFFISAHEQPD  113 (642)
Q Consensus        36 ~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~  113 (642)
                      ..|+-.|.+.++...|. |++...+ ++..|-...+|.+....  + ..+-..++.|-+...+.-..  |+-++. ++  
T Consensus        44 i~rFdeHdGpVRgv~FH-~~qplFV-SGGDDykIkVWnYk~rr--c-lftL~GHlDYVRt~~FHheyPWIlSASD-DQ--  115 (1202)
T KOG0292|consen   44 IDRFDEHDGPVRGVDFH-PTQPLFV-SGGDDYKIKVWNYKTRR--C-LFTLLGHLDYVRTVFFHHEYPWILSASD-DQ--  115 (1202)
T ss_pred             HhhhhccCCccceeeec-CCCCeEE-ecCCccEEEEEecccce--e-hhhhccccceeEEeeccCCCceEEEccC-CC--
Confidence            57888999999999999 9998544 44444567889873222  0 11111233333333333332  222222 11  


Q ss_pred             cccccccceEEEEccCCc-eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCcee-----
Q 039497          114 QIFKSWSALYSTDLKASK-FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV-----  187 (642)
Q Consensus       114 ~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-----  187 (642)
                             .|.+.+-.+++ .-.||.+..+.++++|-|--..|+.++-+.            .|.+||+.+-..+.     
T Consensus       116 -------TIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ------------TVRVWDisGLRkk~~~pg~  176 (1202)
T KOG0292|consen  116 -------TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ------------TVRVWDISGLRKKNKAPGS  176 (1202)
T ss_pred             -------eEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc------------eEEEEeecchhccCCCCCC
Confidence                   34444766655 455777888899999999888999887665            56677764432221     


Q ss_pred             ------------------------EeecC--C-CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCC
Q 039497          188 ------------------------IVCER--G-GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP  240 (642)
Q Consensus       188 ------------------------l~~~~--~-~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~  240 (642)
                                              +...+  + +|.+|.|.-.++++. +.|-...+|+++....=       +....-+
T Consensus       177 ~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG-~DDRqVKlWrmnetKaW-------EvDtcrg  248 (1202)
T KOG0292|consen  177 LEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNETKAW-------EVDTCRG  248 (1202)
T ss_pred             chhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec-CCcceeeEEEeccccce-------eehhhhc
Confidence                                    11111  1 467888877777776 55667799999754320       2222334


Q ss_pred             CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497          241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS  320 (642)
Q Consensus       241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~  320 (642)
                      +-..+....|.|.-..|+..+.     ...|++||+........    +-.+..+..+.......      .++-..-++
T Consensus       249 H~nnVssvlfhp~q~lIlSnsE-----DksirVwDm~kRt~v~t----frrendRFW~laahP~l------NLfAAgHDs  313 (1202)
T KOG0292|consen  249 HYNNVSSVLFHPHQDLILSNSE-----DKSIRVWDMTKRTSVQT----FRRENDRFWILAAHPEL------NLFAAGHDS  313 (1202)
T ss_pred             ccCCcceEEecCccceeEecCC-----CccEEEEecccccceee----eeccCCeEEEEEecCCc------ceeeeecCC
Confidence            4446777788887777777443     44899999943321111    21222222222221110      000000000


Q ss_pred             CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------cCCceeeeeecCCCEEEEEEcC
Q 039497          321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------DRTAFYNSWSPTEKHVIYTSTG  393 (642)
Q Consensus       321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~spdg~~l~~~~~~  393 (642)
                         .+......-..|++.=.++.|.|+.+    ..|+.+|+.+.+...+..       .....++.++|..+.++.+++ 
T Consensus       314 ---Gm~VFkleRErpa~~v~~n~LfYvkd----~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~-  385 (1202)
T KOG0292|consen  314 ---GMIVFKLERERPAYAVNGNGLFYVKD----RFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSN-  385 (1202)
T ss_pred             ---ceEEEEEcccCceEEEcCCEEEEEcc----ceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEec-
Confidence               01111122223444445677888653    688888988765555544       234667899999888888874 


Q ss_pred             CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc
Q 039497          394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN  473 (642)
Q Consensus       394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~  473 (642)
                          .+.+...++.+...++     +..    ..+....++ + .. ..|-.-++..++..+   ..++.+-++....  
T Consensus       386 ----~~n~~y~L~~ipk~~~-----~~~----~~~~~~k~t-G-~~-a~fvarNrfavl~k~---~~~v~ik~l~N~v--  444 (1202)
T KOG0292|consen  386 ----LDNGEYELVQIPKDSD-----GVS----DGKDVKKGT-G-EG-ALFVARNRFAVLDKS---NEQVVIKNLKNKV--  444 (1202)
T ss_pred             ----cCCCeEEEEEecCccc-----ccC----CchhhhcCC-C-Cc-eEEEEecceEEEEec---CcceEEecccchh--
Confidence                3567778888765222     110    111112222 1 11 222222333333331   2245555655333  


Q ss_pred             cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCC
Q 039497          474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG  553 (642)
Q Consensus       474 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg  553 (642)
                        .+.+... .....+.+.-.|..|+ .+.+.         |.++|+..++..--..  ..        .+.-+.||.|+
T Consensus       445 --tkkl~~~-~~~~~IF~ag~g~lll-~~~~~---------v~lfdvQq~~~~~si~--~s--------~vkyvvws~dm  501 (1202)
T KOG0292|consen  445 --TKKLLLP-ESTDDIFYAGTGNLLL-RSPDS---------VTLFDVQQKKKVGSIK--VS--------KVKYVVWSNDM  501 (1202)
T ss_pred             --hhcccCc-ccccceeeccCccEEE-EcCCe---------EEEEEeecceEEEEEe--cC--------ceeEEEEcCcc
Confidence              2333322 2233456666666443 33332         8888987654432221  11        45678999999


Q ss_pred             CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEe
Q 039497          554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLG  616 (642)
Q Consensus       554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~  616 (642)
                      .++++.+.-                  .|..++..=..+..+. ....+.+-+|..+|-++-+
T Consensus       502 ~~vAll~Kh------------------~i~i~~kkL~l~~sih-Etiriksgawde~gVfiYt  545 (1202)
T KOG0292|consen  502 SRVALLSKH------------------TITIADKKLELLCSIH-ETIRIKSGAWDEDGVFIYT  545 (1202)
T ss_pred             chhhhcccc------------------eEEEEecchhheecch-heeEeeeceeccCceEEEE
Confidence            999888743                  5776664322222111 1234567789888876643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.15  E-value=7.8e-10  Score=102.29  Aligned_cols=280  Identities=16%  Similarity=0.183  Sum_probs=173.4

Q ss_pred             ccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCc
Q 039497          244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVK  323 (642)
Q Consensus       244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (642)
                      .+....|||||++|+..+.     ..-|.+|+...+.....           |-|...+                     
T Consensus       215 h~EcA~FSPDgqyLvsgSv-----DGFiEVWny~~GKlrKD-----------LkYQAqd---------------------  257 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSV-----DGFIEVWNYTTGKLRKD-----------LKYQAQD---------------------  257 (508)
T ss_pred             chhheeeCCCCceEeeccc-----cceeeeehhccchhhhh-----------hhhhhhc---------------------
Confidence            4556789999999998443     44788888744321100           1111000                     


Q ss_pred             eeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE-Ee--ecCCceeeeeecCCCEEEEEEcCCCcccCC
Q 039497          324 ELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT-LI--KDRTAFYNSWSPTEKHVIYTSTGPIFQSER  400 (642)
Q Consensus       324 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  400 (642)
                      ..-........+.||.|...++..+. ++  .|-++.+.+|...+ ..  ...++..+.||.|+..|+-.+.       +
T Consensus       258 ~fMMmd~aVlci~FSRDsEMlAsGsq-DG--kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf-------D  327 (508)
T KOG0275|consen  258 NFMMMDDAVLCISFSRDSEMLASGSQ-DG--KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF-------D  327 (508)
T ss_pred             ceeecccceEEEeecccHHHhhccCc-CC--cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc-------c
Confidence            00001111124578999888777544 34  44444555655322 21  2567889999999999988775       5


Q ss_pred             CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497          401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT  480 (642)
Q Consensus       401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~  480 (642)
                      ..+++.-+..        |+     ..+.+..+. ..+....|++||.+|+.++.+   ..+.+|+.++++-   +..+.
T Consensus       328 ~tvRiHGlKS--------GK-----~LKEfrGHs-Syvn~a~ft~dG~~iisaSsD---gtvkvW~~KtteC---~~Tfk  387 (508)
T KOG0275|consen  328 QTVRIHGLKS--------GK-----CLKEFRGHS-SYVNEATFTDDGHHIISASSD---GTVKVWHGKTTEC---LSTFK  387 (508)
T ss_pred             ceEEEecccc--------ch-----hHHHhcCcc-ccccceEEcCCCCeEEEecCC---ccEEEecCcchhh---hhhcc
Confidence            5666666654        33     556666666 778889999999999988743   3788889888764   33332


Q ss_pred             CC--CCcccceeEecCC-CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497          481 DG--PWIDTMPSWSPKG-DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL  557 (642)
Q Consensus       481 ~~--~~~~~~~~~spdG-~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~  557 (642)
                      ..  ...+.++..-|.. ..+++....+        .||++++.+--.+......-++      ..+.....||-|.++|
T Consensus       388 ~~~~d~~vnsv~~~PKnpeh~iVCNrsn--------tv~imn~qGQvVrsfsSGkREg------GdFi~~~lSpkGewiY  453 (508)
T KOG0275|consen  388 PLGTDYPVNSVILLPKNPEHFIVCNRSN--------TVYIMNMQGQVVRSFSSGKREG------GDFINAILSPKGEWIY  453 (508)
T ss_pred             CCCCcccceeEEEcCCCCceEEEEcCCC--------eEEEEeccceEEeeeccCCccC------CceEEEEecCCCcEEE
Confidence            22  2334444444433 3344443333        3999999775555554432222      1455678999999998


Q ss_pred             EEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      ....++                 .+|.+...+|. .+.|..+...+..++.+|-..++++-...|
T Consensus       454 cigED~-----------------vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDg  501 (508)
T KOG0275|consen  454 CIGEDG-----------------VLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDG  501 (508)
T ss_pred             EEccCc-----------------EEEEEEeecCceeeeeecccccccccccCcccchhhhhcccc
Confidence            887654                 78888766555 556666777777888888777666554433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.15  E-value=1.2e-09  Score=106.70  Aligned_cols=225  Identities=13%  Similarity=0.107  Sum_probs=153.1

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ....|+++|..++.++.   ...|.++|+++|+...-.. +..+..+.|.||+..++++.      ..+..+..|++.. 
T Consensus       262 rd~~~s~~g~~fLS~sf---D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G------~sd~ki~~wDiRs-  331 (503)
T KOG0282|consen  262 RDASFNNCGTSFLSASF---DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG------GSDKKIRQWDIRS-  331 (503)
T ss_pred             hhhhccccCCeeeeeec---ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe------cCCCcEEEEeccc-
Confidence            45689999999888765   3678889999998766554 67788899999997777776      3488999999976 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-Cccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-WIDTMPS  490 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-~~~~~~~  490 (642)
                             +.     ..+....+- +.+..+.|-++|++++.+++.   ..+.+|+...+-.   ++.+.... .....+.
T Consensus       332 -------~k-----vvqeYd~hL-g~i~~i~F~~~g~rFissSDd---ks~riWe~~~~v~---ik~i~~~~~hsmP~~~  392 (503)
T KOG0282|consen  332 -------GK-----VVQEYDRHL-GAILDITFVDEGRRFISSSDD---KSVRIWENRIPVP---IKNIADPEMHTMPCLT  392 (503)
T ss_pred             -------hH-----HHHHHHhhh-hheeeeEEccCCceEeeeccC---ccEEEEEcCCCcc---chhhcchhhccCccee
Confidence                   22     333333333 667789999999999887754   3666777665543   33333222 2334557


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc---eEEeee-cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG---LRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM  566 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~  566 (642)
                      .+|.|++++..+.++.        |+++.+.-.-   .+.... ....+       ....+.|||||++|+....++   
T Consensus       393 ~~P~~~~~~aQs~dN~--------i~ifs~~~~~r~nkkK~feGh~vaG-------ys~~v~fSpDG~~l~SGdsdG---  454 (503)
T KOG0282|consen  393 LHPNGKWFAAQSMDNY--------IAIFSTVPPFRLNKKKRFEGHSVAG-------YSCQVDFSPDGRTLCSGDSDG---  454 (503)
T ss_pred             cCCCCCeehhhccCce--------EEEEecccccccCHhhhhcceeccC-------ceeeEEEcCCCCeEEeecCCc---
Confidence            8999999988887654        6666543210   011111 01122       456789999999998887765   


Q ss_pred             cCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCce-EEeec
Q 039497          567 AEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQL-DLGKL  618 (642)
Q Consensus       567 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~-~~~~~  618 (642)
                                    .++.||..+-+ ...+-.+........|+|...- ++++.
T Consensus       455 --------------~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~  494 (503)
T KOG0282|consen  455 --------------KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG  494 (503)
T ss_pred             --------------cEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc
Confidence                          78888877644 5566666667788999998743 44444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.14  E-value=1.1e-07  Score=96.01  Aligned_cols=232  Identities=17%  Similarity=0.154  Sum_probs=139.9

Q ss_pred             EcCCCCEEEEEecCCCceeEEEEECCCCC--e----eEEeecCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          337 FSPDGGLIVFNHDFELNAGIKIAKSDGSK--R----WTLIKDRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~----~~l~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      |..+.++++.--. ...+.|-++++....  .    -.+.....+.++.|.| |..+|++..       +++.+.||.+.
T Consensus       587 fcan~~rvAVPL~-g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~-------ddg~i~lWr~~  658 (1012)
T KOG1445|consen  587 FCANNKRVAVPLA-GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT-------DDGQINLWRLT  658 (1012)
T ss_pred             eeeccceEEEEec-CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc-------cCceEEEEEec
Confidence            4445556655222 223455555554321  1    1122245578899999 778888876       48999999998


Q ss_pred             eecCCCCCCCCCcccc-ceEEccccCCCCccCcEECCCCCe-EEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccc
Q 039497          410 FQLDPSDDNNREEIPC-DVKILTKEETGNNAFPSCSPDGKF-LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT  487 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~SpDg~~-l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~  487 (642)
                      .  +     +..+... ....|+.+. ..+..+.|+|=..- |+.++   -+..|-+||+.+++.   --.|..+...+.
T Consensus       659 a--~-----gl~e~~~tPe~~lt~h~-eKI~slRfHPLAadvLa~as---yd~Ti~lWDl~~~~~---~~~l~gHtdqIf  724 (1012)
T KOG1445|consen  659 A--N-----GLPENEMTPEKILTIHG-EKITSLRFHPLAADVLAVAS---YDSTIELWDLANAKL---YSRLVGHTDQIF  724 (1012)
T ss_pred             c--C-----CCCcccCCcceeeeccc-ceEEEEEecchhhhHhhhhh---ccceeeeeehhhhhh---hheeccCcCcee
Confidence            7  4     2222111 334455554 66788889884433 33333   345899999998875   455777777788


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      .++|||||++++....++.        |.+|....++...-.-.+..+      ..--.+.|.-||+.|+.+.-+...  
T Consensus       725 ~~AWSpdGr~~AtVcKDg~--------~rVy~Prs~e~pv~Eg~gpvg------tRgARi~wacdgr~viv~Gfdk~S--  788 (1012)
T KOG1445|consen  725 GIAWSPDGRRIATVCKDGT--------LRVYEPRSREQPVYEGKGPVG------TRGARILWACDGRIVIVVGFDKSS--  788 (1012)
T ss_pred             EEEECCCCcceeeeecCce--------EEEeCCCCCCCccccCCCCcc------CcceeEEEEecCcEEEEecccccc--
Confidence            9999999999999988875        899988766543222112111      033468899999999888765432  


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCceeeccC----CCCCCCCcEEecCCc-eEEee
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTW----NGYENGTPAWHPGNQ-LDLGK  617 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~----~~~~~~~~~~s~dg~-~~~~~  617 (642)
                                 ..+|-+|+...-....|..    ..-...-|.|.+|.. +|++.
T Consensus       789 -----------eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG  832 (1012)
T KOG1445|consen  789 -----------ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG  832 (1012)
T ss_pred             -----------hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence                       2356666654433222222    112234456666653 33443

>PRK10115 protease 2; Provisional

Probab=99.14  E-value=1.9e-07  Score=102.90  Aligned_cols=258  Identities=12%  Similarity=0.060  Sum_probs=157.1

Q ss_pred             cccceeecCCcEEEEEEeccCCceeeEEEEEeecCC--CCc----ccCCeecCCCCEEEEEEeecCCCCCCcccceEeec
Q 039497          245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP--NFH----HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPV  318 (642)
Q Consensus       245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~--~~~----~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~  318 (642)
                      +....+||||++|+|.....|.....|++.|+..+.  ...    .....|++|++.++|.+.+....  ....++...+
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~--~~~~v~~h~l  206 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTL--LPYQVWRHTI  206 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCC--CCCEEEEEEC
Confidence            445678999999999988889999999999995433  111    13579999999999988753211  1245677777


Q ss_pred             cCCC--ceeEEeeeCC-C--ccEEcCCCCEEEEEecCCCceeEEEEEC--CCCCeeEEee-cCCceeeeeecCCCEEEEE
Q 039497          319 ASPV--KELRMLRLNG-S--FPSFSPDGGLIVFNHDFELNAGIKIAKS--DGSKRWTLIK-DRTAFYNSWSPTEKHVIYT  390 (642)
Q Consensus       319 ~~~~--~~~~~~~~~~-~--~~~~spdg~~l~~~~~~~~~~~l~~~d~--~~~~~~~l~~-~~~~~~~~~spdg~~l~~~  390 (642)
                      ....  ..+....... .  ....+.|++++++.........+++++.  ..++.+.+.. ..... ......+..+++.
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~  285 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLR  285 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEE
Confidence            6552  2222221111 1  1123558998877555555567888774  2333333333 22222 2222345667776


Q ss_pred             EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497          391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN  469 (642)
Q Consensus       391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~  469 (642)
                      ++.     +..+..|+.++.  ..    .+     ..+.+..+ ....+..+.++  +++|++...+++...|++++..+
T Consensus       286 tn~-----~~~~~~l~~~~~--~~----~~-----~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~  347 (686)
T PRK10115        286 SNR-----HGKNFGLYRTRV--RD----EQ-----QWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKT  347 (686)
T ss_pred             EcC-----CCCCceEEEecC--CC----cc-----cCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCC
Confidence            642     345666777765  20    01     34455444 21345556665  66899988888999999999875


Q ss_pred             CccccceeeCC-CCCCcccceeEe--cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          470 GEFNGDIRQLT-DGPWIDTMPSWS--PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       470 g~~~~~~~~l~-~~~~~~~~~~~s--pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                      ++    +..|. ..+.......++  ++++.+++....-.    .+..+|.+|+++++.+.++..
T Consensus       348 ~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~----~P~~~y~~d~~~~~~~~l~~~  404 (686)
T PRK10115        348 RE----VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMT----TPDTLFELDMDTGERRVLKQT  404 (686)
T ss_pred             Cc----eEEecCCCCceEeeecccCCCCCceEEEEEecCC----CCCEEEEEECCCCcEEEEEec
Confidence            55    36555 333222333344  56666666665543    578899999998887777653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.13  E-value=3.5e-08  Score=89.46  Aligned_cols=235  Identities=11%  Similarity=0.060  Sum_probs=150.8

Q ss_pred             EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497          337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS  415 (642)
Q Consensus       337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  415 (642)
                      ..-+.++++..   .....+.+||+++|+...... +..+..+.|+++|+.++++...  .+.....+.++++..  +.+
T Consensus        60 id~~s~~liTG---SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~--~mg~~~~v~~fdi~~--~~~  132 (327)
T KOG0643|consen   60 IDWDSKHLITG---SADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDK--QMGYTCFVSVFDIRD--DSS  132 (327)
T ss_pred             ecCCcceeeec---cccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehh--hcCcceEEEEEEccC--Chh
Confidence            34455655553   334678888999988655554 6778899999999999988753  223355677777764  211


Q ss_pred             CCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee-CCCCCCcccceeEecC
Q 039497          416 DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDGPWIDTMPSWSPK  494 (642)
Q Consensus       416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~~~~~~~~~~~spd  494 (642)
                      .. ..++   ....+.... .......|+|-|+.|++...   ...|-+||+.+|+.   ... ...+...++.+++|||
T Consensus       133 ~~-~s~e---p~~kI~t~~-skit~a~Wg~l~~~ii~Ghe---~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d  201 (327)
T KOG0643|consen  133 DI-DSEE---PYLKIPTPD-SKITSALWGPLGETIIAGHE---DGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRD  201 (327)
T ss_pred             hh-cccC---ceEEecCCc-cceeeeeecccCCEEEEecC---CCcEEEEEcccCce---eeechhhhccccccccccCC
Confidence            00 1111   244454444 56677899999999887653   33789999999863   232 2334456788999999


Q ss_pred             CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497          495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN  574 (642)
Q Consensus       495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~  574 (642)
                      ..+++..+.+.+        -.++|+.+-+...  ....+.       +++..+++|--..++.....+..         
T Consensus       202 ~T~FiT~s~Dtt--------akl~D~~tl~v~K--ty~te~-------PvN~aaisP~~d~VilgGGqeA~---------  255 (327)
T KOG0643|consen  202 RTYFITGSKDTT--------AKLVDVRTLEVLK--TYTTER-------PVNTAAISPLLDHVILGGGQEAM---------  255 (327)
T ss_pred             cceEEecccCcc--------ceeeeccceeeEE--Eeeecc-------cccceecccccceEEecCCceee---------
Confidence            998888887765        5788876543322  211122       56788999988888776544321         


Q ss_pred             CCCCCCcEEEEEcCCC-------------ceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          575 QFQPYGDLYVVKLDGS-------------GLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       575 ~~~~~~~l~~~~~~~~-------------~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                            ++-.-....+             +.-++-.+=+.+.+++|+|||+.+.+....|
T Consensus       256 ------dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG  309 (327)
T KOG0643|consen  256 ------DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG  309 (327)
T ss_pred             ------eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence                  2222221112             2345555556678999999999988765554

>PTZ00420 coronin; Provisional

Probab=99.10  E-value=7.9e-08  Score=101.80  Aligned_cols=256  Identities=11%  Similarity=0.037  Sum_probs=147.3

Q ss_pred             ecCCcEEEEEEec-cCCceeeEEEEEe--------ecCCCCcccCCeecCC-CCEEEEEEeecCCCCCCcccceEeeccC
Q 039497          251 FHDGKRLAVATRR-KNRNFRHIEIYDL--------TLNPNFHHYNPFVSAN-SEFIGYHRFRGESTEGQSTIPHLEPVAS  320 (642)
Q Consensus       251 SpdG~~l~~~~~~-~~~~~~~i~~~d~--------~~~~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~  320 (642)
                      +..++++++...- .|+....+.+|+.        ..++...+....|+|+ +..|+....++.      ..+|-.....
T Consensus        35 a~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt------IrIWDi~t~~  108 (568)
T PTZ00420         35 ACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLT------IRVWEIPHND  108 (568)
T ss_pred             eeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe------EEEEECCCCC
Confidence            4456666664432 3445556677764        2345666778899997 667776655444      3444332211


Q ss_pred             C-Cc----ee-EEee--eCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe-ecCCceeeeeecCCCEEEEEE
Q 039497          321 P-VK----EL-RMLR--LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI-KDRTAFYNSWSPTEKHVIYTS  391 (642)
Q Consensus       321 ~-~~----~~-~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~  391 (642)
                      . ..    .+ .+..  .......|+|++..++....  ....|.++|+.+++..... ....+..+.|+|||+.|+.++
T Consensus       109 ~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s  186 (568)
T PTZ00420        109 ESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC  186 (568)
T ss_pred             ccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe
Confidence            1 00    01 1111  12246789999987765432  2367888898877643322 255688999999999887765


Q ss_pred             cCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCc-----cCcEECCCCCeEEEEeCCC-CceeEEEE
Q 039497          392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN-----AFPSCSPDGKFLVFRSGRS-GHKNLFVL  465 (642)
Q Consensus       392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~SpDg~~l~~~~~~~-g~~~l~~~  465 (642)
                      .       +..++||++..        +.     ....+..+. +..     ....|++|+++|+.++... ...+|.+|
T Consensus       187 ~-------D~~IrIwD~Rs--------g~-----~i~tl~gH~-g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW  245 (568)
T PTZ00420        187 V-------GKHMHIIDPRK--------QE-----IASSFHIHD-GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW  245 (568)
T ss_pred             c-------CCEEEEEECCC--------Cc-----EEEEEeccc-CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence            3       67899999865        22     334444443 221     1124569999988766432 23479999


Q ss_pred             ECCC-CccccceeeCCCCC-CcccceeEecC-CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccc
Q 039497          466 DAVN-GEFNGDIRQLTDGP-WIDTMPSWSPK-GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE  542 (642)
Q Consensus       466 d~~~-g~~~~~~~~l~~~~-~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~  542 (642)
                      |+.. ++.   +..+.-.. ...-.|.|.++ |.+++....+..        |++|++..+....+.......       
T Consensus       246 Dlr~~~~p---l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t--------Ir~~e~~~~~~~~l~~~~s~~-------  307 (568)
T PTZ00420        246 DLKNTTSA---LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN--------CRYYQHSLGSIRKVNEYKSCS-------  307 (568)
T ss_pred             ECCCCCCc---eEEEEecCCccceEEeeeCCCCCEEEEEECCCe--------EEEEEccCCcEEeecccccCC-------
Confidence            9884 332   33322111 12224566665 555544444443        889998777666665433222       


Q ss_pred             cccceEEcCCC
Q 039497          543 RINHVCFSADG  553 (642)
Q Consensus       543 ~~~~~~~S~Dg  553 (642)
                      ....++|.|+-
T Consensus       308 p~~g~~f~Pkr  318 (568)
T PTZ00420        308 PFRSFGFLPKQ  318 (568)
T ss_pred             CccceEEcccc
Confidence            34556777754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.09  E-value=4.7e-08  Score=96.50  Aligned_cols=313  Identities=16%  Similarity=0.076  Sum_probs=183.8

Q ss_pred             CCCccccceeecCCcEEEEEEeccCCceeeEEEEEe------ecCCCCcccCCeecCCCCEEEEEEeecCCC-CCCcccc
Q 039497          241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL------TLNPNFHHYNPFVSANSEFIGYHRFRGEST-EGQSTIP  313 (642)
Q Consensus       241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~-~~~~~~~  313 (642)
                      ....+...++||-|++|++....      .|.+|.-      .......+....+||.+++|......+... .......
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~------~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~  104 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA------GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF  104 (561)
T ss_pred             cCcchhheeecCcchheehhhcc------ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCc
Confidence            45566778899999998875433      3333333      112233455678999999988865433310 0000000


Q ss_pred             ----eEeeccCCCceeEEeeeC-------CC-ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCcee
Q 039497          314 ----HLEPVASPVKELRMLRLN-------GS-FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFY  377 (642)
Q Consensus       314 ----~~~~~~~~~~~~~~~~~~-------~~-~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~  377 (642)
                          .+...+.....+ +..+.       +. ...||-|.++++.+.    ...|+++++ ++...+...    ..++..
T Consensus       105 ~~~n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv----~~sl~i~e~-t~n~~~~p~~~lr~~gi~d  178 (561)
T COG5354         105 TSKNNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARVV----GSSLYIHEI-TDNIEEHPFKNLRPVGILD  178 (561)
T ss_pred             cccCceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhhc----cCeEEEEec-CCccccCchhhccccceee
Confidence                011111111111 11111       11 456788888777754    367888886 444333222    467888


Q ss_pred             eeeecCC--CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC
Q 039497          378 NSWSPTE--KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG  455 (642)
Q Consensus       378 ~~~spdg--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~  455 (642)
                      +.|||-|  ..|+|....  -......+.+|.+..        +.     ....-+-.. .....+.|.+.|++|++...
T Consensus       179 FsisP~~n~~~la~~tPE--k~~kpa~~~i~sIp~--------~s-----~l~tk~lfk-~~~~qLkW~~~g~~ll~l~~  242 (561)
T COG5354         179 FSISPEGNHDELAYWTPE--KLNKPAMVRILSIPK--------NS-----VLVTKNLFK-VSGVQLKWQVLGKYLLVLVM  242 (561)
T ss_pred             EEecCCCCCceEEEEccc--cCCCCcEEEEEEccC--------CC-----eeeeeeeEe-ecccEEEEecCCceEEEEEE
Confidence            9999964  345555432  112355677888865        12     222212222 33456899999999988543


Q ss_pred             CC--------CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          456 RS--------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       456 ~~--------g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                      ++        |..+||++++.....    .......+.+..+.|.|+++.++..+.-      ....+-.+|+.+. ++.
T Consensus       243 t~~ksnKsyfgesnLyl~~~~e~~i----~V~~~~~~pVhdf~W~p~S~~F~vi~g~------~pa~~s~~~lr~N-l~~  311 (561)
T COG5354         243 THTKSNKSYFGESNLYLLRITERSI----PVEKDLKDPVHDFTWEPLSSRFAVISGY------MPASVSVFDLRGN-LRF  311 (561)
T ss_pred             EeeecccceeccceEEEEeeccccc----ceeccccccceeeeecccCCceeEEecc------cccceeecccccc-eEE
Confidence            32        346899999884332    2222445678899999999999888743      3345888888775 544


Q ss_pred             eeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec-cCCCCCCCCcE
Q 039497          528 IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL-TWNGYENGTPA  606 (642)
Q Consensus       528 l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l-t~~~~~~~~~~  606 (642)
                      ..+...          -..+.|||.++++++..-+.              ..+++-.++..+.- ..+ +..+....-..
T Consensus       312 ~~Pe~~----------rNT~~fsp~~r~il~agF~n--------------l~gni~i~~~~~rf-~~~~~~~~~n~s~~~  366 (561)
T COG5354         312 YFPEQK----------RNTIFFSPHERYILFAGFDN--------------LQGNIEIFDPAGRF-KVAGAFNGLNTSYCD  366 (561)
T ss_pred             ecCCcc----------cccccccCcccEEEEecCCc--------------cccceEEeccCCce-EEEEEeecCCceEee
Confidence            433222          24689999999999876554              24588888877643 333 33333444568


Q ss_pred             EecCCceEEee
Q 039497          607 WHPGNQLDLGK  617 (642)
Q Consensus       607 ~s~dg~~~~~~  617 (642)
                      |||||++|...
T Consensus       367 wspd~qF~~~~  377 (561)
T COG5354         367 WSPDGQFYDTD  377 (561)
T ss_pred             ccCCceEEEec
Confidence            99999999764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=1.5e-08  Score=106.53  Aligned_cols=231  Identities=16%  Similarity=0.138  Sum_probs=148.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCC--CeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+.|.|+|+.|+.... +  +.|.+++....  ++..+. ........+.-++.+++.++.       +..+.+|.+.. 
T Consensus        18 ~i~~d~~gefi~tcgs-d--g~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~s~~f~~~s~-------~~tv~~y~fps-   85 (933)
T KOG1274|consen   18 LICYDPDGEFICTCGS-D--GDIRKWKTNSDEEEPETID-ISGELVSSIACYSNHFLTGSE-------QNTVLRYKFPS-   85 (933)
T ss_pred             EEEEcCCCCEEEEecC-C--CceEEeecCCcccCCchhh-ccCceeEEEeecccceEEeec-------cceEEEeeCCC-
Confidence            4589999996666543 3  44444443332  222222 122233444556666766653       67778887754 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                              +.    .-..|+... -....++++-+|+++++.+.+   ..|.+++..++..   .+.+..+...+..+.|
T Consensus        86 --------~~----~~~iL~Rft-lp~r~~~v~g~g~~iaagsdD---~~vK~~~~~D~s~---~~~lrgh~apVl~l~~  146 (933)
T KOG1274|consen   86 --------GE----EDTILARFT-LPIRDLAVSGSGKMIAAGSDD---TAVKLLNLDDSSQ---EKVLRGHDAPVLQLSY  146 (933)
T ss_pred             --------CC----ccceeeeee-ccceEEEEecCCcEEEeecCc---eeEEEEeccccch---heeecccCCceeeeeE
Confidence                    21    222333333 456778999999999998854   4688888877654   5777778888899999


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCC-CcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG-DVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      +|.|+.|+..+-++.        |++|++..+....... +..... ....+....++|+|+|..+++...++       
T Consensus       147 ~p~~~fLAvss~dG~--------v~iw~~~~~~~~~tl~-~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-------  210 (933)
T KOG1274|consen  147 DPKGNFLAVSSCDGK--------VQIWDLQDGILSKTLT-GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-------  210 (933)
T ss_pred             cCCCCEEEEEecCce--------EEEEEcccchhhhhcc-cCCccccccccceeeeeeecCCCCeEEeeccCC-------
Confidence            999999999988775        9999998765432211 111100 01123567899999988888777665       


Q ss_pred             CCCCCCCCCCcEEEEEcCCCcee-eccCC--CCCCCCcEEecCCceEEeecCCC
Q 039497          571 SWPNQFQPYGDLYVVKLDGSGLR-RLTWN--GYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~~~~~~~~-~lt~~--~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                                .|-+|+..+.++. .|...  ......+.|||.|+||+++.-.|
T Consensus       211 ----------~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  211 ----------TVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             ----------eEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC
Confidence                      5667777776533 23322  12256789999999998864443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.05  E-value=1.1e-06  Score=86.85  Aligned_cols=140  Identities=16%  Similarity=0.251  Sum_probs=95.5

Q ss_pred             CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL  515 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l  515 (642)
                      .....++..|+...++..+.   +.++.+|+-..-+    -..+...  ......|+|.| .|+.....+.        .
T Consensus       369 delwgla~hps~~q~~T~gq---dk~v~lW~~~k~~----wt~~~~d--~~~~~~fhpsg-~va~Gt~~G~--------w  430 (626)
T KOG2106|consen  369 DELWGLATHPSKNQLLTCGQ---DKHVRLWNDHKLE----WTKIIED--PAECADFHPSG-VVAVGTATGR--------W  430 (626)
T ss_pred             cceeeEEcCCChhheeeccC---cceEEEccCCcee----EEEEecC--ceeEeeccCcc-eEEEeeccce--------E
Confidence            46677888998877776552   3477777722111    1233332  34567999999 7777766553        7


Q ss_pred             EEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497          516 YVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL  595 (642)
Q Consensus       516 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  595 (642)
                      +++|.++.....+...  ..       +...+.|||||..|++.+.++-.               .||.++.++....++
T Consensus       431 ~V~d~e~~~lv~~~~d--~~-------~ls~v~ysp~G~~lAvgs~d~~i---------------yiy~Vs~~g~~y~r~  486 (626)
T KOG2106|consen  431 FVLDTETQDLVTIHTD--NE-------QLSVVRYSPDGAFLAVGSHDNHI---------------YIYRVSANGRKYSRV  486 (626)
T ss_pred             EEEecccceeEEEEec--CC-------ceEEEEEcCCCCEEEEecCCCeE---------------EEEEECCCCcEEEEe
Confidence            8889887655555544  22       56889999999999999987633               566666666655555


Q ss_pred             cCCC-CCCCCcEEecCCceEEee
Q 039497          596 TWNG-YENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       596 t~~~-~~~~~~~~s~dg~~~~~~  617 (642)
                      -... ..+..+.||+|++++++.
T Consensus       487 ~k~~gs~ithLDwS~Ds~~~~~~  509 (626)
T KOG2106|consen  487 GKCSGSPITHLDWSSDSQFLVSN  509 (626)
T ss_pred             eeecCceeEEeeecCCCceEEec
Confidence            5432 456789999999999875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.04  E-value=1.6e-06  Score=90.80  Aligned_cols=190  Identities=17%  Similarity=0.111  Sum_probs=117.6

Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc--ccCCCCccCcEECCCCCeE
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT--KEETGNNAFPSCSPDGKFL  450 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~SpDg~~l  450 (642)
                      ..+.++..|+-|++.+....       .+.+.++++..        |-     ....+.  ....+.+..++..-=++.+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S-------~G~Id~fNmQS--------Gi-----~r~sf~~~~ah~~~V~gla~D~~n~~~  508 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYS-------KGTIDRFNMQS--------GI-----HRKSFGDSPAHKGEVTGLAVDGTNRLL  508 (910)
T ss_pred             cceEEEEEeccCceEEEecc-------CCeEEEEEccc--------Ce-----eecccccCccccCceeEEEecCCCceE
Confidence            34667788888887666542       67788888865        21     122221  1111445555554333445


Q ss_pred             EEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       451 ~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      +.+. .+|  .|-.|+..++..   ...+.-. .....+.++-....++...++-        .|.++|..+.+..+...
T Consensus       509 vsa~-~~G--ilkfw~f~~k~l---~~~l~l~-~~~~~iv~hr~s~l~a~~~ddf--------~I~vvD~~t~kvvR~f~  573 (910)
T KOG1539|consen  509 VSAG-ADG--ILKFWDFKKKVL---KKSLRLG-SSITGIVYHRVSDLLAIALDDF--------SIRVVDVVTRKVVREFW  573 (910)
T ss_pred             EEcc-Ccc--eEEEEecCCcce---eeeeccC-CCcceeeeeehhhhhhhhcCce--------eEEEEEchhhhhhHHhh
Confidence            4443 333  677888876553   2333322 2345566676666666665544        49999987655543322


Q ss_pred             cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497          531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG  610 (642)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d  610 (642)
                       ++.+       .++++.|||||+||+..+.+.                 .|..||+.++.+.-.-.-.....++.|||+
T Consensus       574 -gh~n-------ritd~~FS~DgrWlisasmD~-----------------tIr~wDlpt~~lID~~~vd~~~~sls~SPn  628 (910)
T KOG1539|consen  574 -GHGN-------RITDMTFSPDGRWLISASMDS-----------------TIRTWDLPTGTLIDGLLVDSPCTSLSFSPN  628 (910)
T ss_pred             -cccc-------ceeeeEeCCCCcEEEEeecCC-----------------cEEEEeccCcceeeeEecCCcceeeEECCC
Confidence             4555       788999999999999998765                 788889887764322222334578999999


Q ss_pred             CceEEeecCCCc
Q 039497          611 NQLDLGKLRLED  622 (642)
Q Consensus       611 g~~~~~~~~~~~  622 (642)
                      |.++++.+....
T Consensus       629 gD~LAT~Hvd~~  640 (910)
T KOG1539|consen  629 GDFLATVHVDQN  640 (910)
T ss_pred             CCEEEEEEecCc
Confidence            999988766543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.03  E-value=1.3e-08  Score=93.91  Aligned_cols=273  Identities=12%  Similarity=0.122  Sum_probs=175.2

Q ss_pred             cceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee--------------------------cCCCCcccCC
Q 039497          234 APTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT--------------------------LNPNFHHYNP  287 (642)
Q Consensus       234 ~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~--------------------------~~~~~~~~~~  287 (642)
                      +..-++.+.......+|||||..++.     |+....|.++|++                          ..+...+...
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvAT-----GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l  178 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVAT-----GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL  178 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEc-----cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence            33456677767778899999998877     5666789999982                          0123344556


Q ss_pred             eecCCCCEEEEEEeecCCCCCCcccceEeeccCC-Cce-eEE--eeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497          288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP-VKE-LRM--LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG  363 (642)
Q Consensus       288 ~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~  363 (642)
                      .|.|..+.|+-.+.++..        .+.+.... .+. ...  -......+.|+|.|.+|+...   ....+.++|+++
T Consensus       179 ~FHPre~ILiS~srD~tv--------KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT---dHp~~rlYdv~T  247 (430)
T KOG0640|consen  179 DFHPRETILISGSRDNTV--------KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT---DHPTLRLYDVNT  247 (430)
T ss_pred             eecchhheEEeccCCCeE--------EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec---CCCceeEEeccc
Confidence            677777666554433321        11111111 000 000  011224678999999888754   357788888887


Q ss_pred             CCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCC
Q 039497          364 SKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGN  437 (642)
Q Consensus       364 ~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  437 (642)
                      -+...-..     .+.+..+.+|+.|+..+..+.       ++.++||+--.        ++     .++.+.... ...
T Consensus       248 ~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-------DG~IklwDGVS--------~r-----Cv~t~~~AH~gse  307 (430)
T KOG0640|consen  248 YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK-------DGAIKLWDGVS--------NR-----CVRTIGNAHGGSE  307 (430)
T ss_pred             eeEeeecCcccccccceeEEEecCCccEEEEecc-------CCcEEeecccc--------HH-----HHHHHHhhcCCce
Confidence            66433222     456888999999985555553       78999998644        23     445554333 135


Q ss_pred             ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC--C---cccceeEecCCCEEEEEecCCCCCCCCc
Q 039497          438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--W---IDTMPSWSPKGDLIAFSSNRHNPDNVEA  512 (642)
Q Consensus       438 ~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~---~~~~~~~spdG~~l~~~~~~~~~~~~~~  512 (642)
                      +....|+.|||+|+...   .+..+++|.+.+|..   ++.-+...  +   --....|.....+++|-....       
T Consensus       308 vcSa~Ftkn~kyiLsSG---~DS~vkLWEi~t~R~---l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas-------  374 (430)
T KOG0640|consen  308 VCSAVFTKNGKYILSSG---KDSTVKLWEISTGRM---LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS-------  374 (430)
T ss_pred             eeeEEEccCCeEEeecC---CcceeeeeeecCCce---EEEEecCCcccchhhhhhhhhcCccceEEcccccc-------
Confidence            67789999999987554   345788999999985   44433211  1   123446777777777765543       


Q ss_pred             eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      ..++.||..++....+...++++       .+..+.-||.+--++..+.+
T Consensus       375 ~slcsWdaRtadr~~l~slgHn~-------a~R~i~HSP~~p~FmTcsdD  417 (430)
T KOG0640|consen  375 NSLCSWDARTADRVALLSLGHNG-------AVRWIVHSPVEPAFMTCSDD  417 (430)
T ss_pred             CceeeccccchhhhhhcccCCCC-------CceEEEeCCCCCceeeeccc
Confidence            45999999888777777777777       56777889999877666654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.03  E-value=3.1e-08  Score=103.64  Aligned_cols=196  Identities=16%  Similarity=0.121  Sum_probs=120.1

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe-ecCCceeeeeecC-CCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI-KDRTAFYNSWSPT-EKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+.||.++ +|+-.+. +.+  +.+|++...+.-.+. +...+..++|.|- .++++-.+.       +.+++||.|.. 
T Consensus       374 DlSWSKn~-fLLSSSM-DKT--VRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL-------D~KvRiWsI~d-  441 (712)
T KOG0283|consen  374 DLSWSKNN-FLLSSSM-DKT--VRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL-------DGKVRLWSISD-  441 (712)
T ss_pred             ecccccCC-eeEeccc-ccc--EEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc-------ccceEEeecCc-
Confidence            56888766 3333332 444  444555555544443 3788999999994 555555443       89999999965 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccc-eeeCCC----CCCcc
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD-IRQLTD----GPWID  486 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~-~~~l~~----~~~~~  486 (642)
                       .            ++..-..-. ..+..+.|+|||++.+..+.. |  ....|++.+-+.... ...+..    ....+
T Consensus       442 -~------------~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~-G--~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rI  504 (712)
T KOG0283|consen  442 -K------------KVVDWNDLR-DLITAVCYSPDGKGAVIGTFN-G--YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRI  504 (712)
T ss_pred             -C------------eeEeehhhh-hhheeEEeccCCceEEEEEec-c--EEEEEEccCCeEEEeeeEeeccCccccCcee
Confidence             2            444445544 678889999999998887743 3  455566554332000 000110    01246


Q ss_pred             cceeEecC-CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          487 TMPSWSPK-GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       487 ~~~~~spd-G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                      +.++|.|. -..|++++++..        |.++|+...++.+......+.      ..-....|+.||++|+.++.+.  
T Consensus       505 TG~Q~~p~~~~~vLVTSnDSr--------IRI~d~~~~~lv~KfKG~~n~------~SQ~~Asfs~Dgk~IVs~seDs--  568 (712)
T KOG0283|consen  505 TGLQFFPGDPDEVLVTSNDSR--------IRIYDGRDKDLVHKFKGFRNT------SSQISASFSSDGKHIVSASEDS--  568 (712)
T ss_pred             eeeEecCCCCCeEEEecCCCc--------eEEEeccchhhhhhhcccccC------CcceeeeEccCCCEEEEeecCc--
Confidence            77777763 335777777654        999998655554333311111      0224678999999999999553  


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          566 MAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       566 ~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                                     .+|+|+.+.
T Consensus       569 ---------------~VYiW~~~~  577 (712)
T KOG0283|consen  569 ---------------WVYIWKNDS  577 (712)
T ss_pred             ---------------eEEEEeCCC
Confidence                           788887643

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.00  E-value=2.9e-08  Score=93.80  Aligned_cols=221  Identities=15%  Similarity=0.141  Sum_probs=148.7

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCC-e-eEE-eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-R-WTL-IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-~-~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      .+.|+..|+.|+-.+..   -.+.++|.++.. . +.+ .....+..+.|-|-|.+|+-.++       +..+..|+++.
T Consensus       155 di~~~a~Gk~l~tcSsD---l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr-------D~tik~We~~t  224 (406)
T KOG0295|consen  155 DISFDASGKYLATCSSD---LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR-------DNTIKAWECDT  224 (406)
T ss_pred             EEEEecCccEEEecCCc---cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc-------ccceeEEeccc
Confidence            44778888887776542   225555655531 1 111 12567889999999999988875       67889999987


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                              +-     ....+..+. ..+..+..+.||..++..++   ...|.+|-+.+++-   ...+..+...+..++
T Consensus       225 --------g~-----cv~t~~~h~-ewvr~v~v~~DGti~As~s~---dqtl~vW~~~t~~~---k~~lR~hEh~vEci~  284 (406)
T KOG0295|consen  225 --------GY-----CVKTFPGHS-EWVRMVRVNQDGTIIASCSN---DQTLRVWVVATKQC---KAELREHEHPVECIA  284 (406)
T ss_pred             --------ce-----eEEeccCch-HhEEEEEecCCeeEEEecCC---CceEEEEEeccchh---hhhhhccccceEEEE
Confidence                    44     778888877 78888899999977665553   34777777777743   133444444444445


Q ss_pred             EecC--------------C-CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCE
Q 039497          491 WSPK--------------G-DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW  555 (642)
Q Consensus       491 ~spd--------------G-~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~  555 (642)
                      |.|.              | .++...+.+.        .|.+||+.++.. .++..++..       .+..++|+|-|++
T Consensus       285 wap~~~~~~i~~at~~~~~~~~l~s~SrDk--------tIk~wdv~tg~c-L~tL~ghdn-------wVr~~af~p~Gky  348 (406)
T KOG0295|consen  285 WAPESSYPSISEATGSTNGGQVLGSGSRDK--------TIKIWDVSTGMC-LFTLVGHDN-------WVRGVAFSPGGKY  348 (406)
T ss_pred             ecccccCcchhhccCCCCCccEEEeecccc--------eEEEEeccCCeE-EEEEecccc-------eeeeeEEcCCCeE
Confidence            5443              2 2333333333        389999988744 344446665       7889999999999


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEee
Q 039497          556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      |+-.++++                 .|.+||+..++ .+.+..+......+.|..+--++++.
T Consensus       349 i~ScaDDk-----------------tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTG  394 (406)
T KOG0295|consen  349 ILSCADDK-----------------TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTG  394 (406)
T ss_pred             EEEEecCC-----------------cEEEEEeccceeeeccCCCcceeEEEecCCCCceEEec
Confidence            99888776                 56666776654 66677777777888888777666553

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.00  E-value=1.4e-07  Score=96.53  Aligned_cols=120  Identities=13%  Similarity=0.096  Sum_probs=77.1

Q ss_pred             EEccccCCCCccCcEECCCCCeEEEEeCC--CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497          428 KILTKEETGNNAFPSCSPDGKFLVFRSGR--SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~--~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      .+|-.+. ..+..++.||+|+.|+.+-..  .....|++|+..+-..   ...|..+...+..++|||||++|+..+.+.
T Consensus       519 ~KLYGHG-yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~---~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR  594 (764)
T KOG1063|consen  519 HKLYGHG-YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ---VQELEGHSLTVTRLAFSPDGRYLLSVSRDR  594 (764)
T ss_pred             HHhccCc-eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh---hheecccceEEEEEEECCCCcEEEEeecCc
Confidence            3344444 567788999999987754321  2345899999876554   456888888899999999999999888775


Q ss_pred             CCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       506 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      .        +.+|.......-.+....    .....+.+.+..|+||+++++..+.+.
T Consensus       595 t--------~sl~~~~~~~~~e~~fa~----~k~HtRIIWdcsW~pde~~FaTaSRDK  640 (764)
T KOG1063|consen  595 T--------VSLYEVQEDIKDEFRFAC----LKAHTRIIWDCSWSPDEKYFATASRDK  640 (764)
T ss_pred             e--------EEeeeeecccchhhhhcc----ccccceEEEEcccCcccceeEEecCCc
Confidence            3        444443211110000000    011123567889999999977666654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=4.6e-08  Score=92.44  Aligned_cols=233  Identities=21%  Similarity=0.277  Sum_probs=143.8

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCC-CEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTE-KHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      +..+|++  ..++|+.. .....|.+++........+..  ...+..++|-|.+ +.|++..        ...+.||..+
T Consensus       102 r~~aWhq--H~~~fava-~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC--------r~gIciW~~s  170 (445)
T KOG2139|consen  102 RGVAWHQ--HIIAFAVA-TNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC--------RAGICIWSDS  170 (445)
T ss_pred             eeEeech--hhhhhhhh-ccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee--------cceeEEEEcC
Confidence            4567776  33444332 345677788877766666665  5678899999975 4556665        6788999886


Q ss_pred             eecCCCCC-CCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCccc
Q 039497          410 FQLDPSDD-NNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDT  487 (642)
Q Consensus       410 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~  487 (642)
                      ...+.... ..+...  ..+.+.......+..+.|.+||..++.++.  +...|.+||+++|..    ..|. ...+...
T Consensus       171 ~tln~~r~~~~~s~~--~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~--gsssi~iWdpdtg~~----~pL~~~glgg~s  242 (445)
T KOG2139|consen  171 RTLNANRNIRMMSTH--HLQVLQDPGHNPVTSMQWNEDGTILVTASF--GSSSIMIWDPDTGQK----IPLIPKGLGGFS  242 (445)
T ss_pred             ccccccccccccccc--chhheeCCCCceeeEEEEcCCCCEEeeccc--CcceEEEEcCCCCCc----ccccccCCCcee
Confidence            51110000 000100  111111111135778899999999988776  556899999999885    5555 5556677


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC--ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS--GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                      ...|||||.+|+.+.-+..        ..+|.....  +++-++.   .+       ++....|||+|++|+|+..... 
T Consensus       243 lLkwSPdgd~lfaAt~dav--------frlw~e~q~wt~erw~lg---sg-------rvqtacWspcGsfLLf~~sgsp-  303 (445)
T KOG2139|consen  243 LLKWSPDGDVLFAATCDAV--------FRLWQENQSWTKERWILG---SG-------RVQTACWSPCGSFLLFACSGSP-  303 (445)
T ss_pred             eEEEcCCCCEEEEecccce--------eeeehhcccceecceecc---CC-------ceeeeeecCCCCEEEEEEcCCc-
Confidence            8899999998877766542        344433221  1222221   22       5677899999999999876532 


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEcCCCcee----------ec-------c--CC----CCCCCCcEEecCCceEEeec
Q 039497          566 MAEPVSWPNQFQPYGDLYVVKLDGSGLR----------RL-------T--WN----GYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       566 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~l-------t--~~----~~~~~~~~~s~dg~~~~~~~  618 (642)
                                     .||....++....          .+       +  ..    .+....++|.|.|.+++..-
T Consensus       304 ---------------~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  304 ---------------RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             ---------------eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence                           6776665442211          01       1  11    34567899999999986543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.98  E-value=3.1e-08  Score=91.54  Aligned_cols=284  Identities=15%  Similarity=0.136  Sum_probs=174.8

Q ss_pred             ceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecC----CCceeEe--------------ecC
Q 039497          131 KFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESD----PNKRVIV--------------CER  192 (642)
Q Consensus       131 ~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~l~--------------~~~  192 (642)
                      +...|+.+...-..++|||||..+|..+.+.            .|-+++++.    .+.+++.              ..+
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~------------SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH  171 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADA------------SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH  171 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcc------------eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc
Confidence            4566777776667789999999999877555            566666540    0111111              111


Q ss_pred             C---CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCcee
Q 039497          193 G---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFR  269 (642)
Q Consensus       193 ~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~  269 (642)
                      .   ..+.|.|-..|+++. ..+++..+|.+...+-+       +..++...-..+..+.|.|.|.+|++..     ...
T Consensus       172 ~devn~l~FHPre~ILiS~-srD~tvKlFDfsK~saK-------rA~K~~qd~~~vrsiSfHPsGefllvgT-----dHp  238 (430)
T KOG0640|consen  172 VDEVNDLDFHPRETILISG-SRDNTVKLFDFSKTSAK-------RAFKVFQDTEPVRSISFHPSGEFLLVGT-----DHP  238 (430)
T ss_pred             cCcccceeecchhheEEec-cCCCeEEEEecccHHHH-------HHHHHhhccceeeeEeecCCCceEEEec-----CCC
Confidence            1   346899998999888 67888888877544332       2233344444677889999999999944     445


Q ss_pred             eEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec
Q 039497          270 HIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD  349 (642)
Q Consensus       270 ~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  349 (642)
                      .+++||+.+..                .|+....+.                     ..........+|+.|+..+..+.
T Consensus       239 ~~rlYdv~T~Q----------------cfvsanPd~---------------------qht~ai~~V~Ys~t~~lYvTaSk  281 (430)
T KOG0640|consen  239 TLRLYDVNTYQ----------------CFVSANPDD---------------------QHTGAITQVRYSSTGSLYVTASK  281 (430)
T ss_pred             ceeEEecccee----------------EeeecCccc---------------------ccccceeEEEecCCccEEEEecc
Confidence            89999984321                222221110                     00111234578999984444332


Q ss_pred             CCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcccc
Q 039497          350 FELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC  425 (642)
Q Consensus       350 ~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  425 (642)
                       +  +.|.++|--+++......    ...+.+..|+.||++|+...       .+..+++|.+.+        ++     
T Consensus       282 -D--G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-------~DS~vkLWEi~t--------~R-----  338 (430)
T KOG0640|consen  282 -D--GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-------KDSTVKLWEIST--------GR-----  338 (430)
T ss_pred             -C--CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-------CcceeeeeeecC--------Cc-----
Confidence             3  556666644444322221    44578899999999887664       378899999987        44     


Q ss_pred             ceEEccccC----CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccceeEecCCCEEEE
Q 039497          426 DVKILTKEE----TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       426 ~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~  500 (642)
                      ..+..+...    ...-....|.....+++|-..+.  ..+.-||..++..   ...+. .+.+.+..+.-||.+--+..
T Consensus       339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas--~slcsWdaRtadr---~~l~slgHn~a~R~i~HSP~~p~FmT  413 (430)
T KOG0640|consen  339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS--NSLCSWDARTADR---VALLSLGHNGAVRWIVHSPVEPAFMT  413 (430)
T ss_pred             eEEEEecCCcccchhhhhhhhhcCccceEEcccccc--Cceeeccccchhh---hhhcccCCCCCceEEEeCCCCCceee
Confidence            444444321    01233456777778888776544  4799999988875   23332 34445566677888876665


Q ss_pred             EecC
Q 039497          501 SSNR  504 (642)
Q Consensus       501 ~~~~  504 (642)
                      .+.+
T Consensus       414 csdD  417 (430)
T KOG0640|consen  414 CSDD  417 (430)
T ss_pred             eccc
Confidence            5554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.98  E-value=3.9e-08  Score=96.48  Aligned_cols=228  Identities=14%  Similarity=0.078  Sum_probs=153.4

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ....|-.||+.++..   +..+.+.++|.++... +.+.. ...+....|+|+++.++...      .++...++|+++.
T Consensus        72 ~s~~fR~DG~LlaaG---D~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~------sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   72 YSVDFRSDGRLLAAG---DESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG------SDDKVVKYWDLST  142 (487)
T ss_pred             eEEEeecCCeEEEcc---CCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEec------CCCceEEEEEcCC
Confidence            345788999866553   3346677778544222 12211 55677889999988887766      3577888899865


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                        .      -     ....+..++ ..+...+|+|-...|+++..-+|  .|.+||+.+...  .+..+ ++...+..+.
T Consensus       143 --a------~-----v~~~l~~ht-DYVR~g~~~~~~~hivvtGsYDg--~vrl~DtR~~~~--~v~el-nhg~pVe~vl  203 (487)
T KOG0310|consen  143 --A------Y-----VQAELSGHT-DYVRCGDISPANDHIVVTGSYDG--KVRLWDTRSLTS--RVVEL-NHGCPVESVL  203 (487)
T ss_pred             --c------E-----EEEEecCCc-ceeEeeccccCCCeEEEecCCCc--eEEEEEeccCCc--eeEEe-cCCCceeeEE
Confidence              1      1     333566666 78889999999999999887655  677777765422  02333 3445677888


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      +-|.|..|+.++.+.         +.+||+.+|.........+..       .++.+.+..|+++|+..+-++       
T Consensus       204 ~lpsgs~iasAgGn~---------vkVWDl~~G~qll~~~~~H~K-------tVTcL~l~s~~~rLlS~sLD~-------  260 (487)
T KOG0310|consen  204 ALPSGSLIASAGGNS---------VKVWDLTTGGQLLTSMFNHNK-------TVTCLRLASDSTRLLSGSLDR-------  260 (487)
T ss_pred             EcCCCCEEEEcCCCe---------EEEEEecCCceehhhhhcccc-------eEEEEEeecCCceEeeccccc-------
Confidence            999999888776554         999999866544332223444       578899999999999888775       


Q ss_pred             CCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                                ++-+++...-+...=-...+.+.+++.|||++.++.....|
T Consensus       261 ----------~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  261 ----------HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             ----------ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccc
Confidence                      55566644433322222456678999999998887655444

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.96  E-value=5.1e-08  Score=92.21  Aligned_cols=258  Identities=14%  Similarity=0.096  Sum_probs=161.1

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      .-+.|+-.+++++ .+++  .|..+|..+++       ....+.++...+..++|+..|++|+.+..+.     .+.+||
T Consensus       114 v~~hp~~~~v~~a-s~d~--tikv~D~~tg~-------~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl-----~~~LWd  178 (406)
T KOG0295|consen  114 VIFHPSEALVVSA-SEDA--TIKVFDTETGE-------LERSLRGHTDSVFDISFDASGKYLATCSSDL-----SAKLWD  178 (406)
T ss_pred             eeeccCceEEEEe-cCCc--eEEEEEccchh-------hhhhhhccccceeEEEEecCccEEEecCCcc-----chhhee
Confidence            3456776677766 3455  66667777773       4445566655688899999999999865543     588999


Q ss_pred             e---------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEE
Q 039497          276 L---------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVF  346 (642)
Q Consensus       276 ~---------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  346 (642)
                      +         ..++.-.++.+.+-|-|.+|+-...+..      ...|.........++...+.-...++.+.||..++-
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t------ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As  252 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT------IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS  252 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc------eeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence            8         3456666788899999988877754443      223332221111111100001134466888876655


Q ss_pred             EecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecC--------------CCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          347 NHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPT--------------EKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       347 ~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spd--------------g~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      .+   ....|.++-+.+++...+..  ...+..++|.|.              +..+....      ..+..+++|++.+
T Consensus       253 ~s---~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~------SrDktIk~wdv~t  323 (406)
T KOG0295|consen  253 CS---NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG------SRDKTIKIWDVST  323 (406)
T ss_pred             cC---CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee------cccceEEEEeccC
Confidence            43   33455555555553222221  233444444432              22333332      2378999999987


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                              +.     ..-.|..+. ..+..++|+|.|+||+-.++   +..|.+||+++++-   ++.+..++.-+....
T Consensus       324 --------g~-----cL~tL~ghd-nwVr~~af~p~Gkyi~ScaD---Dktlrvwdl~~~~c---mk~~~ah~hfvt~lD  383 (406)
T KOG0295|consen  324 --------GM-----CLFTLVGHD-NWVRGVAFSPGGKYILSCAD---DKTLRVWDLKNLQC---MKTLEAHEHFVTSLD  383 (406)
T ss_pred             --------Ce-----EEEEEeccc-ceeeeeEEcCCCeEEEEEec---CCcEEEEEecccee---eeccCCCcceeEEEe
Confidence                    44     666677776 78999999999999988774   34799999998886   677777777777778


Q ss_pred             EecCCCEEEEEec
Q 039497          491 WSPKGDLIAFSSN  503 (642)
Q Consensus       491 ~spdG~~l~~~~~  503 (642)
                      |..+--+++..+-
T Consensus       384 fh~~~p~VvTGsV  396 (406)
T KOG0295|consen  384 FHKTAPYVVTGSV  396 (406)
T ss_pred             cCCCCceEEeccc
Confidence            8776655544443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=3.9e-08  Score=88.57  Aligned_cols=236  Identities=12%  Similarity=0.105  Sum_probs=159.2

Q ss_pred             eCCCccEEcCC-CCEEEEEec----CCCceeEEEEECC-CCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCC
Q 039497          330 LNGSFPSFSPD-GGLIVFNHD----FELNAGIKIAKSD-GSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSER  400 (642)
Q Consensus       330 ~~~~~~~~spd-g~~l~~~~~----~~~~~~l~~~d~~-~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~  400 (642)
                      +.+....|||= .++|+....    -.+.+.|++.+++ .+..+....   ......++|+++-..++++..      ++
T Consensus         9 f~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~------GD   82 (311)
T KOG0277|consen    9 FHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS------GD   82 (311)
T ss_pred             cccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe------cC
Confidence            34455677772 345665432    2467899999996 333333333   677899999999877777773      58


Q ss_pred             CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497          401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT  480 (642)
Q Consensus       401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~  480 (642)
                      +.++||+...  .     .+     .+..+..+. ..+..+.|++-.++.+.++.-++  .|.+|+..-++.   +....
T Consensus        83 GSLrl~d~~~--~-----s~-----Pi~~~kEH~-~EV~Svdwn~~~r~~~ltsSWD~--TiKLW~~~r~~S---v~Tf~  144 (311)
T KOG0277|consen   83 GSLRLFDLTM--P-----SK-----PIHKFKEHK-REVYSVDWNTVRRRIFLTSSWDG--TIKLWDPNRPNS---VQTFN  144 (311)
T ss_pred             ceEEEeccCC--C-----Cc-----chhHHHhhh-hheEEeccccccceeEEeeccCC--ceEeecCCCCcc---eEeec
Confidence            9999999654  1     22     444445555 77888899998778777776555  566677665554   67777


Q ss_pred             CCCCcccceeEec-CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497          481 DGPWIDTMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT  559 (642)
Q Consensus       481 ~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~  559 (642)
                      .+...+...+||| ..+.++..+.+..        +.+||++......... .+..       .+....|+.-...++++
T Consensus       145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~--------l~lwdvr~~gk~~~i~-ah~~-------Eil~cdw~ky~~~vl~T  208 (311)
T KOG0277|consen  145 GHNSCIYQAAFSPHIPNLFASASGDGT--------LRLWDVRSPGKFMSIE-AHNS-------EILCCDWSKYNHNVLAT  208 (311)
T ss_pred             CCccEEEEEecCCCCCCeEEEccCCce--------EEEEEecCCCceeEEE-eccc-------eeEeecccccCCcEEEe
Confidence            7767778889999 5666777766654        7778876543333322 2222       45677899988888888


Q ss_pred             EecCCcccCCCCCCCCCCCCCcEEEEEcCCCc--eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG--LRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      ....+                -|+.||+..-.  +..|..++..++.+.|||-..-++++.+..
T Consensus       209 g~vd~----------------~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD  256 (311)
T KOG0277|consen  209 GGVDN----------------LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYD  256 (311)
T ss_pred             cCCCc----------------eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcccc
Confidence            75543                67788876532  556777778889999999886666655544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.94  E-value=2.1e-07  Score=90.04  Aligned_cols=222  Identities=18%  Similarity=0.244  Sum_probs=136.9

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeee-cCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWS-PTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      .|.|.+....|+++..  ....|+.++.+++....+.... ...+.+. ++ ..|+++.        .....++  +.  
T Consensus         4 gp~~d~~~g~l~~~D~--~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~-g~l~v~~--------~~~~~~~--d~--   67 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDI--PGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPD-GRLYVAD--------SGGIAVV--DP--   67 (246)
T ss_dssp             EEEEETTTTEEEEEET--TTTEEEEEETTTTEEEEEESSS-EEEEEEECTT-SEEEEEE--------TTCEEEE--ET--
T ss_pred             ceEEECCCCEEEEEEc--CCCEEEEEECCCCeEEEEecCC-CceEEEEccC-CEEEEEE--------cCceEEE--ec--
Confidence            5689986666877763  3578999999998765544433 6667777 55 5566666        2344444  33  


Q ss_pred             CCCCCCCCCccccceEEcccc-----CCCCccCcEECCCCCeEEEEeCCCC----c--eeEEEEECCCCccccceeeCCC
Q 039497          413 DPSDDNNREEIPCDVKILTKE-----ETGNNAFPSCSPDGKFLVFRSGRSG----H--KNLFVLDAVNGEFNGDIRQLTD  481 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~SpDg~~l~~~~~~~g----~--~~l~~~d~~~g~~~~~~~~l~~  481 (642)
                      +     ++     +.+.+...     .......+++.|||+ |+++.....    .  ..||+++.+ ++.    ..+..
T Consensus        68 ~-----~g-----~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~----~~~~~  131 (246)
T PF08450_consen   68 D-----TG-----KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKV----TVVAD  131 (246)
T ss_dssp             T-----TT-----EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE----EEEEE
T ss_pred             C-----CC-----cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeE----EEEec
Confidence            1     22     33333332     113456689999998 666654321    1  579999998 663    55544


Q ss_pred             CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc--e---EEeeec-CCCCCCCcccccccceEEcCCCCE
Q 039497          482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG--L---RRIHVA-GPEGSGDVDRERINHVCFSADGEW  555 (642)
Q Consensus       482 ~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~--~---~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~  555 (642)
                      .-...+.++|+|||+.|++......       .|+.++++...  .   +.+... ...+       .+..+++..+|+ 
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~g-------~pDG~~vD~~G~-  196 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNG-------RIWRFDLDADGGELSNRRVFIDFPGGPG-------YPDGLAVDSDGN-  196 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTT-------EEEEEEEETTTCCEEEEEEEEE-SSSSC-------EEEEEEEBTTS--
T ss_pred             CcccccceEECCcchheeecccccc-------eeEEEeccccccceeeeeeEEEcCCCCc-------CCCcceEcCCCC-
Confidence            4345577899999999988876553       49999886322  2   222221 1111       356789999997 


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEe-cC-CceEEeec
Q 039497          556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH-PG-NQLDLGKL  618 (642)
Q Consensus       556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s-~d-g~~~~~~~  618 (642)
                      |+++....                ..|++++.+|..+..+........+++|. +| ..+|++..
T Consensus       197 l~va~~~~----------------~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  197 LWVADWGG----------------GRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEEEEETT----------------TEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             EEEEEcCC----------------CEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence            54444332                28999999976666666553466789995 55 36667653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.93  E-value=1.1e-07  Score=101.77  Aligned_cols=170  Identities=12%  Similarity=0.023  Sum_probs=114.7

Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      ..+..+.+||||++++|+..... ...+....||..+.        ++     ..+.++...  ....|.|||||++|+|
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~--------gg-----~~~~lt~g~--~~t~PsWspDG~~lw~  413 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL--------GG-----VAVQVLEGH--SLTRPSWSLDADAVWV  413 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeC--------CC-----cceeeecCC--CCCCceECCCCCceEE
Confidence            35678999999999999984221 12245567888766        34     446666654  4788999999998888


Q ss_pred             EeCC---------CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEE---EeC
Q 039497          453 RSGR---------SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV---IKP  520 (642)
Q Consensus       453 ~~~~---------~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~---~d~  520 (642)
                      .++.         .+..+||++++++|+.    .+  .....+..+.|||||++|+|....         +||+   ...
T Consensus       414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~----~~--~~~g~Issl~wSpDG~RiA~i~~g---------~v~Va~Vvr~  478 (591)
T PRK13616        414 VVDGNTVVRVIRDPATGQLARTPVDASAV----AS--RVPGPISELQLSRDGVRAAMIIGG---------KVYLAVVEQT  478 (591)
T ss_pred             EecCcceEEEeccCCCceEEEEeccCchh----hh--ccCCCcCeEEECCCCCEEEEEECC---------EEEEEEEEeC
Confidence            8643         2456888888887764    43  334558899999999999998842         3777   554


Q ss_pred             CCCceEEeee-----cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497          521 DGSGLRRIHV-----AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL  595 (642)
Q Consensus       521 ~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  595 (642)
                      .+|. ..++.     .....       .+.++.|..|++ |+......+               ..+|.++++|...+.+
T Consensus       479 ~~G~-~~l~~~~~l~~~l~~-------~~~~l~W~~~~~-L~V~~~~~~---------------~~v~~v~vDG~~~~~~  534 (591)
T PRK13616        479 EDGQ-YALTNPREVGPGLGD-------TAVSLDWRTGDS-LVVGRSDPE---------------HPVWYVNLDGSNSDAL  534 (591)
T ss_pred             CCCc-eeecccEEeecccCC-------ccccceEecCCE-EEEEecCCC---------------CceEEEecCCcccccc
Confidence            5555 33321     12222       246789999998 444443322               2799999998876654


Q ss_pred             cC
Q 039497          596 TW  597 (642)
Q Consensus       596 t~  597 (642)
                      ..
T Consensus       535 ~~  536 (591)
T PRK13616        535 PS  536 (591)
T ss_pred             CC
Confidence            44

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=98.92  E-value=6e-08  Score=95.27  Aligned_cols=266  Identities=15%  Similarity=0.111  Sum_probs=167.5

Q ss_pred             eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceee--CCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497          197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV--TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY  274 (642)
Q Consensus       197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~  274 (642)
                      +.|...+.+|+.  ..|...||.+.-.+.+.      .+.+|  ...+..+...-++|||+.|++     |+....+.+|
T Consensus       426 tIS~~trhVyTg--GkgcVKVWdis~pg~k~------PvsqLdcl~rdnyiRSckL~pdgrtLiv-----GGeastlsiW  492 (705)
T KOG0639|consen  426 TISNPTRHVYTG--GKGCVKVWDISQPGNKS------PVSQLDCLNRDNYIRSCKLLPDGRTLIV-----GGEASTLSIW  492 (705)
T ss_pred             EecCCcceeEec--CCCeEEEeeccCCCCCC------ccccccccCcccceeeeEecCCCceEEe-----ccccceeeee
Confidence            566666666665  24656777765443321      11222  233455666778999999998     5557789999


Q ss_pred             EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce
Q 039497          275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA  354 (642)
Q Consensus       275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  354 (642)
                      ||....                                   ..++.   +++-.......++.|||.+ ++|..-.  .+
T Consensus       493 DLAapT-----------------------------------prika---eltssapaCyALa~spDak-vcFsccs--dG  531 (705)
T KOG0639|consen  493 DLAAPT-----------------------------------PRIKA---ELTSSAPACYALAISPDAK-VCFSCCS--DG  531 (705)
T ss_pred             eccCCC-----------------------------------cchhh---hcCCcchhhhhhhcCCccc-eeeeecc--CC
Confidence            982211                                   00000   0000111224568899997 7775532  36


Q ss_pred             eEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497          355 GIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK  432 (642)
Q Consensus       355 ~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (642)
                      +|.+||+.....++-..  ..+...+.+|+||.+|+....       ++.++.|++..        ++     ...+-. 
T Consensus       532 nI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-------DntvRcWDlre--------gr-----qlqqhd-  590 (705)
T KOG0639|consen  532 NIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------DNTVRCWDLRE--------GR-----QLQQHD-  590 (705)
T ss_pred             cEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC-------ccceeehhhhh--------hh-----hhhhhh-
Confidence            78888887665444333  567889999999999987653       78899999865        22     222111 


Q ss_pred             cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497          433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA  512 (642)
Q Consensus       433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~  512 (642)
                      .. ..+..+..+|.|.||++.-.   ..+++++.....+.    .+|..+..-+-++.|++-|+|++-+..++-      
T Consensus       591 F~-SQIfSLg~cP~~dWlavGMe---ns~vevlh~skp~k----yqlhlheScVLSlKFa~cGkwfvStGkDnl------  656 (705)
T KOG0639|consen  591 FS-SQIFSLGYCPTGDWLAVGME---NSNVEVLHTSKPEK----YQLHLHESCVLSLKFAYCGKWFVSTGKDNL------  656 (705)
T ss_pred             hh-hhheecccCCCccceeeecc---cCcEEEEecCCccc----eeecccccEEEEEEecccCceeeecCchhh------
Confidence            11 35667888999999998653   34788888775553    888887777888999999999887776642      


Q ss_pred             eeEEEEeCC-CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          513 FSLYVIKPD-GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       513 ~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                        |-.|..- +..+-+..   ...       .+....+|.|.++|+..+.+.
T Consensus       657 --LnawrtPyGasiFqsk---E~S-------sVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  657 --LNAWRTPYGASIFQSK---ESS-------SVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             --hhhccCccccceeecc---ccC-------cceeeeeccCceEEEecCCCc
Confidence              3333322 22222221   122       456677899999998887664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=5.2e-07  Score=83.90  Aligned_cols=267  Identities=13%  Similarity=0.106  Sum_probs=155.5

Q ss_pred             CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          194 GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       194 ~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      ....|++-|.++++. ..+|..-||  |..+-.       ....+..+-..+.+++||+||++|+.++++.     .+.+
T Consensus        27 ~~~~Fs~~G~~lAvG-c~nG~vvI~--D~~T~~-------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~-----si~l   91 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVG-CANGRVVIY--DFDTFR-------IARMLSAHVRPITSLCWSRDGRKLLTSSRDW-----SIKL   91 (405)
T ss_pred             ceEEeccCcceeeee-ccCCcEEEE--Eccccc-------hhhhhhccccceeEEEecCCCCEeeeecCCc-----eeEE
Confidence            356999999999988 567855555  444431       3345566666788899999999999976655     8999


Q ss_pred             EEeecCC-------CCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe------eeCCCccEEcCC
Q 039497          274 YDLTLNP-------NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML------RLNGSFPSFSPD  340 (642)
Q Consensus       274 ~d~~~~~-------~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~spd  340 (642)
                      ||+..+.       ...+....|.|-.+..+....-...       ..+..+..+...+...      ........|.+-
T Consensus        92 wDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s-------p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~  164 (405)
T KOG1273|consen   92 WDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES-------PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR  164 (405)
T ss_pred             EeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC-------cEEEEecCCceeeccCCCccccccccccccccCC
Confidence            9994332       2233344556644443333221111       1222222221111111      011123357888


Q ss_pred             CCEEEEEecCCCceeEEEEECCCCCeeEE---eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCC
Q 039497          341 GGLIVFNHDFELNAGIKIAKSDGSKRWTL---IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDD  417 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  417 (642)
                      |++|+..   ..++.|.+++.++-+.+.-   +....+.++.++-.|+.|++-+.       +..++.|.+..- +. ..
T Consensus       165 g~yIitG---tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts-------DRvIR~ye~~di-~~-~~  232 (405)
T KOG1273|consen  165 GKYIITG---TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS-------DRVIRTYEISDI-DD-EG  232 (405)
T ss_pred             CCEEEEe---cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC-------CceEEEEehhhh-cc-cC
Confidence            9877663   4568899999888765432   22356778899999998887653       567777776410 10 00


Q ss_pred             CCCCc-cccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC-cccceeEecCC
Q 039497          418 NNREE-IPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKG  495 (642)
Q Consensus       418 ~~~~~-~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~-~~~~~~~spdG  495 (642)
                      .+++. ...+.+.+....  .-...-||.||.||+..+.  ..-.||+|....|..   ++.|....+ ....+.|.|=-
T Consensus       233 r~~e~e~~~K~qDvVNk~--~Wk~ccfs~dgeYv~a~s~--~aHaLYIWE~~~GsL---VKILhG~kgE~l~DV~whp~r  305 (405)
T KOG1273|consen  233 RDGEVEPEHKLQDVVNKL--QWKKCCFSGDGEYVCAGSA--RAHALYIWEKSIGSL---VKILHGTKGEELLDVNWHPVR  305 (405)
T ss_pred             ccCCcChhHHHHHHHhhh--hhhheeecCCccEEEeccc--cceeEEEEecCCcce---eeeecCCchhheeecccccce
Confidence            11200 000111111111  2234688999999987763  335899999999997   555554442 33456788876


Q ss_pred             CEEEEE
Q 039497          496 DLIAFS  501 (642)
Q Consensus       496 ~~l~~~  501 (642)
                      -.|+-.
T Consensus       306 p~i~si  311 (405)
T KOG1273|consen  306 PIIASI  311 (405)
T ss_pred             eeeeec
Confidence            555544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=1e-06  Score=83.56  Aligned_cols=171  Identities=16%  Similarity=0.202  Sum_probs=108.6

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ..+.|.+||..++-.+  -+...|.++|.+++...++..  .+++.-+.|||||.+|+.++-       +...++|....
T Consensus       199 tsmqwn~dgt~l~tAS--~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~-------davfrlw~e~q  269 (445)
T KOG2139|consen  199 TSMQWNEDGTILVTAS--FGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC-------DAVFRLWQENQ  269 (445)
T ss_pred             eEEEEcCCCCEEeecc--cCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc-------cceeeeehhcc
Confidence            3568999999888766  345788899999998888875  566778999999998887763       67788885533


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-------cceeeCC---
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN-------GDIRQLT---  480 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-------~~~~~l~---  480 (642)
                              .-.    +.+.+. .. +.+....|||+|++|+|+..  +...||.+........       +.+..+.   
T Consensus       270 --------~wt----~erw~l-gs-grvqtacWspcGsfLLf~~s--gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  270 --------SWT----KERWIL-GS-GRVQTACWSPCGSFLLFACS--GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             --------cce----ecceec-cC-CceeeeeecCCCCEEEEEEc--CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence                    110    222222 23 57888999999999999886  4456666654321110       0011110   


Q ss_pred             -----CC----CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEe
Q 039497          481 -----DG----PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI  528 (642)
Q Consensus       481 -----~~----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  528 (642)
                           .+    .+....++|.|.|.+|+..-....--......|-++|........+
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel  390 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL  390 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence                 11    2345667999999999988765421011334455566544333333

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.87  E-value=2.5e-06  Score=82.57  Aligned_cols=220  Identities=15%  Similarity=0.101  Sum_probs=122.7

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ....+|.||+++++... .....|-++|++.++.........+..+.-+++.+ +...+.       ++.+.-+.++.  
T Consensus        98 ~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~-F~~lC~-------DGsl~~v~Ld~--  166 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNF-TPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRG-FSMLCG-------DGSLLTVTLDA--  166 (342)
T ss_dssp             GGEEE-TTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTE-EEEEET-------TSCEEEEEETS--
T ss_pred             cceEEccCCcEEEEEcc-CCCCeEEEEECCCCceeeeecCCCEEEEEecCCCc-eEEEec-------CCceEEEEECC--
Confidence            35588999998877543 56688999999998876655534444333333333 333332       66777777765  


Q ss_pred             CCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-cceeeCCC-----C---
Q 039497          413 DPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN-GDIRQLTD-----G---  482 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~~~~~l~~-----~---  482 (642)
                      +      |++.. +...+... .+....++.++.++.+++|.+..   ..||..++...... .....+..     .   
T Consensus       167 ~------Gk~~~-~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~---G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr  236 (342)
T PF06433_consen  167 D------GKEAQ-KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE---GNVYSADLSGDSAKFGKPWSLLTDAEKADGWR  236 (342)
T ss_dssp             T------SSEEE-EEEEESSTTTS-B-S--EEETTTTEEEEEBTT---SEEEEEEETTSSEEEEEEEESS-HHHHHTTEE
T ss_pred             C------CCEeE-eeccccCCCCcccccccceECCCCeEEEEecC---CEEEEEeccCCcccccCcccccCccccccCcC
Confidence            3      33211 11122221 11233456777788888888854   48999998754420 00111111     1   


Q ss_pred             CCcccceeEecCCCEEEEEecCCCCC--CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497          483 PWIDTMPSWSPKGDLIAFSSNRHNPD--NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       483 ~~~~~~~~~spdG~~l~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      ++...-.++++..++||+.-..+...  .....+||++|+++++........  .       .+.+++.|.|.+=++|..
T Consensus       237 PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~-------~~~Si~Vsqd~~P~L~~~  307 (342)
T PF06433_consen  237 PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--H-------PIDSIAVSQDDKPLLYAL  307 (342)
T ss_dssp             E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--E-------EESEEEEESSSS-EEEEE
T ss_pred             CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--C-------ccceEEEccCCCcEEEEE
Confidence            11223358888777777664432211  246789999999987654333221  1       346799999999777765


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497          561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW  597 (642)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~  597 (642)
                      +.+.               ..|+++|..++++.+-..
T Consensus       308 ~~~~---------------~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  308 SAGD---------------GTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             ETTT---------------TEEEEEETTT--EEEEE-
T ss_pred             cCCC---------------CeEEEEeCcCCcEEeehh
Confidence            5432               279999998887554443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=98.86  E-value=5.5e-08  Score=87.31  Aligned_cols=184  Identities=17%  Similarity=0.179  Sum_probs=125.3

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE--Eee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT--LIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~--l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ..+|+.|.++|+....   ..-|.+++++..+..+  +.. .+.+..+.|-...+.|+-..       ++..+++|+..+
T Consensus       105 ~~af~~ds~~lltgg~---ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa-------dd~tVRLWD~rT  174 (334)
T KOG0278|consen  105 AVAFSQDSNYLLTGGQ---EKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA-------DDKTVRLWDHRT  174 (334)
T ss_pred             eEEecccchhhhccch---HHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec-------cCCceEEEEecc
Confidence            4578999888877332   2334556665554322  222 56788888887777776554       378999999987


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                              +.     ..+.|...  ..+.++.+|+||++|..+..    ..|..||.++=..    ..-...+..+.+.+
T Consensus       175 --------gt-----~v~sL~~~--s~VtSlEvs~dG~ilTia~g----ssV~Fwdaksf~~----lKs~k~P~nV~SAS  231 (334)
T KOG0278|consen  175 --------GT-----EVQSLEFN--SPVTSLEVSQDGRILTIAYG----SSVKFWDAKSFGL----LKSYKMPCNVESAS  231 (334)
T ss_pred             --------Cc-----EEEEEecC--CCCcceeeccCCCEEEEecC----ceeEEeccccccc----eeeccCcccccccc
Confidence                    33     45555444  36788999999998876652    2577788775432    33344567788889


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                      .+|+...++....+.        -+|.+|..+++.......++.+       ++..+.|||||...+..+.++..
T Consensus       232 L~P~k~~fVaGged~--------~~~kfDy~TgeEi~~~nkgh~g-------pVhcVrFSPdGE~yAsGSEDGTi  291 (334)
T KOG0278|consen  232 LHPKKEFFVAGGEDF--------KVYKFDYNTGEEIGSYNKGHFG-------PVHCVRFSPDGELYASGSEDGTI  291 (334)
T ss_pred             ccCCCceEEecCcce--------EEEEEeccCCceeeecccCCCC-------ceEEEEECCCCceeeccCCCceE
Confidence            999986554444433        3899999999887665445666       78899999999966666666644

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.86  E-value=2.1e-06  Score=82.21  Aligned_cols=239  Identities=15%  Similarity=0.100  Sum_probs=149.1

Q ss_pred             ccEEcCCC-CEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          334 FPSFSPDG-GLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       334 ~~~~spdg-~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      .+..+|+. ..++|.. +- ..-++++|..+++..+...    .....+..|||||++||.+.+.  +....+.+-+|+.
T Consensus         9 ~~a~~p~~~~avafaR-RP-G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd--~~~g~G~IgVyd~   84 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFAR-RP-GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND--YETGRGVIGVYDA   84 (305)
T ss_pred             ceeeCCCCCeEEEEEe-CC-CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc--cCCCcEEEEEEEC
Confidence            44678844 4445544 22 3567788998888765544    2234578999999988877653  4456777888887


Q ss_pred             EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC------C---------CceeEEEEECCCCccc
Q 039497          409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR------S---------GHKNLFVLDAVNGEFN  473 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~------~---------g~~~l~~~d~~~g~~~  473 (642)
                      ..         +-+   .+..+.... -..-.+.+.|||+.|+++...      .         -...|..+|..+|+. 
T Consensus        85 ~~---------~~~---ri~E~~s~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l-  150 (305)
T PF07433_consen   85 AR---------GYR---RIGEFPSHG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL-  150 (305)
T ss_pred             cC---------CcE---EEeEecCCC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce-
Confidence            63         100   344444433 334457899999999887531      1         145788898899986 


Q ss_pred             cceee--CCC--CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-----CCCCCCCcccccc
Q 039497          474 GDIRQ--LTD--GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-----GPEGSGDVDRERI  544 (642)
Q Consensus       474 ~~~~~--l~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-----~~~~~~~~~~~~~  544 (642)
                        +.+  |..  +...+.++++++||. ++|.............-|.+.+... ..+.+...     ...+       ++
T Consensus       151 --l~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~~~l~~-------Y~  219 (305)
T PF07433_consen  151 --LEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQWRRLNG-------YI  219 (305)
T ss_pred             --eeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHHHhhCC-------ce
Confidence              555  422  334678899999997 5555444333234455566665533 23333221     1223       67


Q ss_pred             cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecC
Q 039497          545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      .+++++.||..+++++.+++                .+.+||..++.+.....- -+...++-.+++ +++++..
T Consensus       220 gSIa~~~~g~~ia~tsPrGg----------------~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGG----------------RVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCC----------------EEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCC
Confidence            89999999999999998876                577888888876655432 122344444444 4455433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.85  E-value=2.1e-07  Score=90.06  Aligned_cols=215  Identities=14%  Similarity=0.156  Sum_probs=141.7

Q ss_pred             eeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ..+.++|...++...+..  ...+..+.++|+...++..+       .+..+++|.+..        ..     ....+.
T Consensus       241 ~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aS-------ad~~i~vws~~~--------~s-----~~~~~~  300 (506)
T KOG0289|consen  241 KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITAS-------ADEIIRVWSVPL--------SS-----EPTSSR  300 (506)
T ss_pred             CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecC-------CcceEEeecccc--------cc-----Cccccc
Confidence            356667766665444433  34577888999988777665       367889998866        22     333333


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--CCcccceeEecCCCEEEEEecCCCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTMPSWSPKGDLIAFSSNRHNPDN  509 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~~~~~  509 (642)
                      .+. ..+..+...|.|.||+.++++ +  ..-..|..+|..   +......  .-.....+|+|||..+.....++    
T Consensus       301 ~h~-~~V~~ls~h~tgeYllsAs~d-~--~w~Fsd~~~g~~---lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~----  369 (506)
T KOG0289|consen  301 PHE-EPVTGLSLHPTGEYLLSASND-G--TWAFSDISSGSQ---LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG----  369 (506)
T ss_pred             ccc-ccceeeeeccCCcEEEEecCC-c--eEEEEEccCCcE---EEEEeeccccceeEEeeEcCCceEEeccCCCc----
Confidence            343 677888999999999988865 3  444556677764   4444432  23457789999997555444443    


Q ss_pred             CCceeEEEEeCCCCceEEeee-cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497          510 VEAFSLYVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD  588 (642)
Q Consensus       510 ~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  588 (642)
                          .|.+||++...  .+.. .++.+       .+..++||.+|-+|+..++++                 .|..||+.
T Consensus       370 ----~vkiwdlks~~--~~a~Fpght~-------~vk~i~FsENGY~Lat~add~-----------------~V~lwDLR  419 (506)
T KOG0289|consen  370 ----VVKIWDLKSQT--NVAKFPGHTG-------PVKAISFSENGYWLATAADDG-----------------SVKLWDLR  419 (506)
T ss_pred             ----eEEEEEcCCcc--ccccCCCCCC-------ceeEEEeccCceEEEEEecCC-----------------eEEEEEeh
Confidence                48999997655  2322 24555       788999999999999988775                 57788886


Q ss_pred             CCc-eeeccC-CCCCCCCcEEecCCceEEeecCCCcccccceeeeeccc
Q 039497          589 GSG-LRRLTW-NGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFDEP  635 (642)
Q Consensus       589 ~~~-~~~lt~-~~~~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~  635 (642)
                      .-+ .+.++- ....+.++.|.+.|++++..      ..+++.+.|.+.
T Consensus       420 Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~------g~~l~Vy~~~k~  462 (506)
T KOG0289|consen  420 KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA------GSDLQVYICKKK  462 (506)
T ss_pred             hhcccceeeccccccceeEEEcCCCCeEEee------cceeEEEEEecc
Confidence            543 233332 22356789999999998665      234455555543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=6.8e-05  Score=76.42  Aligned_cols=228  Identities=10%  Similarity=0.037  Sum_probs=132.4

Q ss_pred             eecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccc
Q 039497           38 RLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFK  117 (642)
Q Consensus        38 rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  117 (642)
                      .+..+...+..-.+. |--.++. .+-.+|..+||.++..-. .......+-...........+.++.-+..        
T Consensus         8 k~~~rSdRVKsVd~H-PtePw~l-a~LynG~V~IWnyetqtm-VksfeV~~~PvRa~kfiaRknWiv~GsDD--------   76 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFH-PTEPWIL-AALYNGDVQIWNYETQTM-VKSFEVSEVPVRAAKFIARKNWIVTGSDD--------   76 (794)
T ss_pred             HhhccCCceeeeecC-CCCceEE-EeeecCeeEEEeccccee-eeeeeecccchhhheeeeccceEEEecCC--------
Confidence            344566666677777 8877776 566789999999833220 00000000000000111133344443322        


Q ss_pred             cccceEEEEccCC-ceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cCCC-
Q 039497          118 SWSALYSTDLKAS-KFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ERGG-  194 (642)
Q Consensus       118 ~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~~-  194 (642)
                        .+|-+.+..++ +.+....+..+..+.++-|---+++.++++-            .|-+|+-+.+-...-++ .+.. 
T Consensus        77 --~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm------------~iKlW~we~~wa~~qtfeGH~Hy  142 (794)
T KOG0276|consen   77 --MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDM------------TIKLWDWENEWACEQTFEGHEHY  142 (794)
T ss_pred             --ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCcc------------EEEEeeccCceeeeeEEcCcceE
Confidence              15666677665 4556667777778888899999999888776            45566665554433333 3332 


Q ss_pred             --cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCc--EEEEEEeccCCceee
Q 039497          195 --WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK--RLAVATRRKNRNFRH  270 (642)
Q Consensus       195 --~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~--~l~~~~~~~~~~~~~  270 (642)
                        .+++.|...--|.+..-|.+..+|.+....         ....+..+...+..+.+-+-|.  +|+.     +.....
T Consensus       143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---------~nfTl~gHekGVN~Vdyy~~gdkpylIs-----gaDD~t  208 (794)
T KOG0276|consen  143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---------PNFTLEGHEKGVNCVDYYTGGDKPYLIS-----GADDLT  208 (794)
T ss_pred             EEEEEecCCCccceeeeeccccEEEEEcCCCC---------CceeeeccccCcceEEeccCCCcceEEe-----cCCCce
Confidence              358888875444443678888898875433         3356667765677777755553  4555     445569


Q ss_pred             EEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecC
Q 039497          271 IEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGE  304 (642)
Q Consensus       271 i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~  304 (642)
                      +.+||.++        ++...+....+.|.=..|+..++++.
T Consensus       209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT  250 (794)
T KOG0276|consen  209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT  250 (794)
T ss_pred             EEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc
Confidence            99999942        44444555555555544555444444

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=5.2e-05  Score=77.23  Aligned_cols=418  Identities=12%  Similarity=0.074  Sum_probs=223.6

Q ss_pred             eeeeEEEecCCCCCCCCCce-eeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccc
Q 039497           17 YGFDVFSIKSPFVNAPKFHE-HRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR   95 (642)
Q Consensus        17 ~~~~i~~~~~~~~~~~~~~~-~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~   95 (642)
                      |+|+|-+++...     ... +-+--....++.++|- +--++|+. ...|...++|.++...+ .....  .+..|-+.
T Consensus        33 ynG~V~IWnyet-----qtmVksfeV~~~PvRa~kfi-aRknWiv~-GsDD~~IrVfnynt~ek-V~~Fe--AH~DyIR~  102 (794)
T KOG0276|consen   33 YNGDVQIWNYET-----QTMVKSFEVSEVPVRAAKFI-ARKNWIVT-GSDDMQIRVFNYNTGEK-VKTFE--AHSDYIRS  102 (794)
T ss_pred             ecCeeEEEeccc-----ceeeeeeeecccchhhheee-eccceEEE-ecCCceEEEEeccccee-eEEee--ccccceee
Confidence            788888888776     443 4444566778889999 88889994 44578888888744331 11111  12223333


Q ss_pred             ccc-CCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCC-CCcEEEEEecCCCCCCCCCCCCee
Q 039497           96 PVA-RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSY-SGKFIAVASYESRPWPGEFHELNT  173 (642)
Q Consensus        96 ~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~  173 (642)
                      ... +-.-.+.+++.+-       ...+|..+-.=........+..+.++.+|.| |-...|.++-+.            
T Consensus       103 iavHPt~P~vLtsSDDm-------~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr------------  163 (794)
T KOG0276|consen  103 IAVHPTLPYVLTSSDDM-------TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR------------  163 (794)
T ss_pred             eeecCCCCeEEecCCcc-------EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc------------
Confidence            333 3333444444331       1246644433334555666777789999999 556677776555            


Q ss_pred             eEEEEEecCCCceeEee--cCC-CcceEeeCC-e-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccc
Q 039497          174 DIVVFQESDPNKRVIVC--ERG-GWPTWSGDS-T-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTP  248 (642)
Q Consensus       174 ~l~~~~~~~g~~~~l~~--~~~-~~~~wspdg-~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  248 (642)
                      .|-+|.+.+..+-....  ..+ ..+.+-+-| + .+++. +.|....||.+..++         ..+.+.++...+...
T Consensus       164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg-aDD~tiKvWDyQtk~---------CV~TLeGHt~Nvs~v  233 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG-ADDLTIKVWDYQTKS---------CVQTLEGHTNNVSFV  233 (794)
T ss_pred             cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec-CCCceEEEeecchHH---------HHHHhhcccccceEE
Confidence            68899988776443332  222 345777666 4 44444 556666777665443         666777776566666


Q ss_pred             eeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc--------ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497          249 AAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH--------HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS  320 (642)
Q Consensus       249 ~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~--------~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~  320 (642)
                      .|.|.=-.|+.     ++...++++|+-.+-....        +...+-.+++..++.-- +...        ....+..
T Consensus       234 ~fhp~lpiiis-----gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~-Deg~--------i~v~lgr  299 (794)
T KOG0276|consen  234 FFHPELPIIIS-----GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF-DEGS--------VTVKLGR  299 (794)
T ss_pred             EecCCCcEEEE-----ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec-cCCc--------EEEEccC
Confidence            66666555555     3444588888873211100        00111112222222211 1110        0111111


Q ss_pred             CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC---------CCCeeEEee------cCCceeeeeecCCC
Q 039497          321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD---------GSKRWTLIK------DRTAFYNSWSPTEK  385 (642)
Q Consensus       321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~---------~~~~~~l~~------~~~~~~~~~spdg~  385 (642)
                      ..          -..+.++.|+ |++..    ..+|.-.+++         .++.-.+..      .-....++-||+|+
T Consensus       300 ee----------P~vsMd~~gK-Iiwa~----~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGr  364 (794)
T KOG0276|consen  300 EE----------PAVSMDSNGK-IIWAV----HSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGR  364 (794)
T ss_pred             CC----------CceeecCCcc-EEEEc----CceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCc
Confidence            11          1224455564 66633    2334433332         233222222      12344678899999


Q ss_pred             EEEEEEcCCCcccCCCeEEEEEE-EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEE
Q 039497          386 HVIYTSTGPIFQSERATVQIARV-SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV  464 (642)
Q Consensus       386 ~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~  464 (642)
                      .++++.        ++...||.. ..               ..+.     .+....+.|++|....+..... +  .|.+
T Consensus       365 fV~Vcg--------dGEyiIyTala~---------------RnK~-----fG~~~eFvw~~dsne~avRes~-~--~vki  413 (794)
T KOG0276|consen  365 FVVVCG--------DGEYIIYTALAL---------------RNKA-----FGSGLEFVWAADSNEFAVRESN-G--NVKI  413 (794)
T ss_pred             EEEEec--------CccEEEEEeeeh---------------hhcc-----cccceeEEEcCCCCeEEEEecC-C--ceEE
Confidence            998886        566666653 22               1111     1345578999996665554321 3  3444


Q ss_pred             EECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497          465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI  544 (642)
Q Consensus       465 ~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~  544 (642)
                      +  +..+.   .+.+... .. ..--|  .|-+|.+.+++.         |+.+|-+++.+.+-..-           ..
T Consensus       414 ~--knfke---~ksi~~~-~~-~e~i~--gg~Llg~~ss~~---------~~fydW~~~~lVrrI~v-----------~~  464 (794)
T KOG0276|consen  414 F--KNFKE---HKSIRPD-MS-AEGIF--GGPLLGVRSSDF---------LCFYDWESGELVRRIEV-----------TS  464 (794)
T ss_pred             E--eccee---ccccccc-cc-eeeec--CCceEEEEeCCe---------EEEEEcccceEEEEEee-----------cc
Confidence            4  22332   2333322 11 11122  366666666654         88888777766443321           23


Q ss_pred             cceEEcCCCCEEEEEEec
Q 039497          545 NHVCFSADGEWLLFTANL  562 (642)
Q Consensus       545 ~~~~~S~Dg~~l~~~~~~  562 (642)
                      .++.|+.+|..++....+
T Consensus       465 k~v~w~d~g~lVai~~d~  482 (794)
T KOG0276|consen  465 KHVYWSDNGELVAIAGDD  482 (794)
T ss_pred             ceeEEecCCCEEEEEecC
Confidence            579999999977777654

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.82  E-value=3.2e-07  Score=98.31  Aligned_cols=169  Identities=17%  Similarity=0.235  Sum_probs=107.6

Q ss_pred             CccEEcCCCCEEEEEec-----CCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCC--c-ccCCCeEE
Q 039497          333 SFPSFSPDGGLIVFNHD-----FELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI--F-QSERATVQ  404 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~-----~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~--~-~~~~~~~~  404 (642)
                      ..+.+||||++++|+..     .+...+||+.+..+ ..++++.......+.|+|||+.|+|+..+..  + .......+
T Consensus       353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq  431 (591)
T PRK13616        353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ  431 (591)
T ss_pred             ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCCce
Confidence            47789999999999763     23457999999744 4477766556889999999999999875310  0 01112334


Q ss_pred             EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEE---EECCCCccc-cceeeCC
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV---LDAVNGEFN-GDIRQLT  480 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~---~d~~~g~~~-~~~~~l~  480 (642)
                      +|.+..  +     ++     ....  ... +.+..+.|||||++|+|...  +  +||+   .....|+.. ..++.|.
T Consensus       432 l~~~~v--d-----~g-----e~~~--~~~-g~Issl~wSpDG~RiA~i~~--g--~v~Va~Vvr~~~G~~~l~~~~~l~  492 (591)
T PRK13616        432 LARTPV--D-----AS-----AVAS--RVP-GPISELQLSRDGVRAAMIIG--G--KVYLAVVEQTEDGQYALTNPREVG  492 (591)
T ss_pred             EEEEec--c-----Cc-----hhhh--ccC-CCcCeEEECCCCCEEEEEEC--C--EEEEEEEEeCCCCceeecccEEee
Confidence            444443  2     22     2222  222 46888999999999999883  3  6777   555556520 1112244


Q ss_pred             CCCCc-ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEe
Q 039497          481 DGPWI-DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI  528 (642)
Q Consensus       481 ~~~~~-~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  528 (642)
                      ..... ...+.|..++..+ .....      ....+|.+++++...+.+
T Consensus       493 ~~l~~~~~~l~W~~~~~L~-V~~~~------~~~~v~~v~vDG~~~~~~  534 (591)
T PRK13616        493 PGLGDTAVSLDWRTGDSLV-VGRSD------PEHPVWYVNLDGSNSDAL  534 (591)
T ss_pred             cccCCccccceEecCCEEE-EEecC------CCCceEEEecCCcccccc
Confidence            33333 4678999999854 44332      234589999998766543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.81  E-value=5.2e-07  Score=84.20  Aligned_cols=182  Identities=15%  Similarity=0.160  Sum_probs=109.8

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECC-CCCeeE----Eee-----cCCceeeeeecCCC-EEEEEEcCCCcccCCCe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWT----LIK-----DRTAFYNSWSPTEK-HVIYTSTGPIFQSERAT  402 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~-~~~~~~----l~~-----~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~  402 (642)
                      .+.|||||.+|+.    .-+..|.++|+. .+..-.    ++.     .+.+..++|+|-.. .+++.+.       ...
T Consensus       163 sL~Fs~DGeqlfa----GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY-------~q~  231 (406)
T KOG2919|consen  163 SLQFSPDGEQLFA----GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY-------GQR  231 (406)
T ss_pred             eEEecCCCCeEee----cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecc-------cce
Confidence            4689999998866    335678888873 222111    111     34577889999655 5666554       234


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG  482 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~  482 (642)
                      +-||.-+.        .+     ....+..+. +.+.++.|.+||++|+..+.++  ..|-.||+..-..  .+..|..+
T Consensus       232 ~giy~~~~--------~~-----pl~llggh~-gGvThL~~~edGn~lfsGaRk~--dkIl~WDiR~~~~--pv~~L~rh  293 (406)
T KOG2919|consen  232 VGIYNDDG--------RR-----PLQLLGGHG-GGVTHLQWCEDGNKLFSGARKD--DKILCWDIRYSRD--PVYALERH  293 (406)
T ss_pred             eeeEecCC--------CC-----ceeeecccC-CCeeeEEeccCcCeecccccCC--CeEEEEeehhccc--hhhhhhhh
Confidence            44554422        12     444445444 8899999999999987666543  4788899864321  13334333


Q ss_pred             CC-ccc--ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-CceEEeeecCCCCCCCcccccccceEEcCCCCEEEE
Q 039497          483 PW-IDT--MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF  558 (642)
Q Consensus       483 ~~-~~~--~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~  558 (642)
                      .. ...  .+...|+|++|+-...++.        |.+||+++ ++...++.. ...       -+..+++.|--..++.
T Consensus       294 v~~TNQRI~FDld~~~~~LasG~tdG~--------V~vwdlk~~gn~~sv~~~-~sd-------~vNgvslnP~mpilat  357 (406)
T KOG2919|consen  294 VGDTNQRILFDLDPKGEILASGDTDGS--------VRVWDLKDLGNEVSVTGN-YSD-------TVNGVSLNPIMPILAT  357 (406)
T ss_pred             ccCccceEEEecCCCCceeeccCCCcc--------EEEEecCCCCCccccccc-ccc-------cccceecCcccceeee
Confidence            22 122  2456799998887766654        88999987 664444432 222       3456777777554444


Q ss_pred             EE
Q 039497          559 TA  560 (642)
Q Consensus       559 ~~  560 (642)
                      .+
T Consensus       358 ss  359 (406)
T KOG2919|consen  358 SS  359 (406)
T ss_pred             cc
Confidence            44

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.79  E-value=3.5e-07  Score=95.95  Aligned_cols=289  Identities=13%  Similarity=0.096  Sum_probs=155.5

Q ss_pred             CCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCC-CCcc------------cccCCCCCCccccccccCCCEEEEEE
Q 039497           41 DGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPG-SSKT------------ELLPSIPCSLFHDRPVARNNKLFFIS  107 (642)
Q Consensus        41 ~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~-g~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (642)
                      .|.+....-.|| +||++|| ++..||..+||.+... -...            ...+..+...... -...+.......
T Consensus       265 ah~gaIw~mKFS-~DGKyLA-saGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~-~~~~~~~s~~~~  341 (712)
T KOG0283|consen  265 AHKGAIWAMKFS-HDGKYLA-SAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE-EKISSRTSSSRK  341 (712)
T ss_pred             ccCCcEEEEEeC-CCCceee-ecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc-cccccccccccc
Confidence            688888999999 9999999 6677999999998221 1000            0000000000000 000011111100


Q ss_pred             eccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCcee
Q 039497          108 AHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV  187 (642)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  187 (642)
                      .........    ..+.......-...+..+.+.....+||-++ +|+.++.+.            .+.+|.+...+-..
T Consensus       342 ~~~s~~~~~----p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDK------------TVRLWh~~~~~CL~  404 (712)
T KOG0283|consen  342 GSQSPCVLL----PLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDK------------TVRLWHPGRKECLK  404 (712)
T ss_pred             ccCCccccC----CCccccccccchhhhhccchhheecccccCC-eeEeccccc------------cEEeecCCCcceee
Confidence            000000000    0000001111112223344445778999765 667777666            68889888777777


Q ss_pred             EeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccC
Q 039497          188 IVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKN  265 (642)
Q Consensus       188 l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~  265 (642)
                      ++.+..  ..++|.|-..-||++..-||..+||.+.  ..        ++........-+..+.++|||+..++..-.+ 
T Consensus       405 ~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~--d~--------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G-  473 (712)
T KOG0283|consen  405 VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS--DK--------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNG-  473 (712)
T ss_pred             EEecCCeeEEEEecccCCCcEeecccccceEEeecC--cC--------eeEeehhhhhhheeEEeccCCceEEEEEecc-
Confidence            766555  4579999887777765778977887663  21        2222233333566788999999888744333 


Q ss_pred             CceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC----CCceeEEeeeCCCccEEcCC-
Q 039497          266 RNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS----PVKELRMLRLNGSFPSFSPD-  340 (642)
Q Consensus       266 ~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~spd-  340 (642)
                          ..++|+.....               +...              +...+..    ....++       .+.+.|. 
T Consensus       474 ----~C~fY~t~~lk---------------~~~~--------------~~I~~~~~Kk~~~~rIT-------G~Q~~p~~  513 (712)
T KOG0283|consen  474 ----YCRFYDTEGLK---------------LVSD--------------FHIRLHNKKKKQGKRIT-------GLQFFPGD  513 (712)
T ss_pred             ----EEEEEEccCCe---------------EEEe--------------eeEeeccCccccCceee-------eeEecCCC
Confidence                66777652111               1110              0111110    111122       2233322 


Q ss_pred             CCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      -+.|++++   ...+|.++|...........    ........|+.||++|+.++.       +..++||.++.
T Consensus       514 ~~~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se-------Ds~VYiW~~~~  577 (712)
T KOG0283|consen  514 PDEVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE-------DSWVYIWKNDS  577 (712)
T ss_pred             CCeEEEec---CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec-------CceEEEEeCCC
Confidence            22455544   34788999975544332222    334567889999999999984       78999999855

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=5.9e-05  Score=79.95  Aligned_cols=453  Identities=10%  Similarity=0.047  Sum_probs=238.8

Q ss_pred             CceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCC---cccccCCCCCCccccccccCCCEEEEEEeccCCCccccc
Q 039497           42 GTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSS---KTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKS  118 (642)
Q Consensus        42 ~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  118 (642)
                      -.+.+....|. |.--+|. ++--+|..++|.+.-+--   -.++-+++.      ...+..+.-+|++.+++-      
T Consensus         8 kSsRvKglsFH-P~rPwIL-tslHsG~IQlWDYRM~tli~rFdeHdGpVR------gv~FH~~qplFVSGGDDy------   73 (1202)
T KOG0292|consen    8 KSSRVKGLSFH-PKRPWIL-TSLHSGVIQLWDYRMGTLIDRFDEHDGPVR------GVDFHPTQPLFVSGGDDY------   73 (1202)
T ss_pred             ccccccceecC-CCCCEEE-EeecCceeeeehhhhhhHHhhhhccCCccc------eeeecCCCCeEEecCCcc------
Confidence            34455667788 8888888 667789999998722210   011112222      233444555666665532      


Q ss_pred             ccceEEEEccCCc-eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---
Q 039497          119 WSALYSTDLKASK-FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---  194 (642)
Q Consensus       119 ~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---  194 (642)
                      ...+|  +.+..+ .-.|..+..+.....|-+.=-||+.++++.            .|.+|+-.+++...+...+..   
T Consensus        74 kIkVW--nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQ------------TIrIWNwqsr~~iavltGHnHYVM  139 (1202)
T KOG0292|consen   74 KIKVW--NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQ------------TIRIWNWQSRKCIAVLTGHNHYVM  139 (1202)
T ss_pred             EEEEE--ecccceehhhhccccceeEEeeccCCCceEEEccCCC------------eEEEEeccCCceEEEEecCceEEE
Confidence            22466  444332 345556666667777888888999999887            788999999887776665553   


Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCC--Ccccc------------------cCCccceeeCCCCCccccceeecCC
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPE--NLEFL------------------GFPIAPTRVTPPGVHCFTPAAFHDG  254 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~--~~~~~------------------~~~~~~~~l~~~~~~~~~~~~SpdG  254 (642)
                      ..+|.|...+++++ .-|.+..+|.+.--.  ..++.                  .|......+.+++..+...+|.|--
T Consensus       140 cAqFhptEDlIVSa-SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl  218 (1202)
T KOG0292|consen  140 CAQFHPTEDLIVSA-SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL  218 (1202)
T ss_pred             eeccCCccceEEEe-cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence            35899977777776 456666666442100  00000                  0222223345566667777887776


Q ss_pred             cEEEEEEeccCCceeeEEEEEe----------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce
Q 039497          255 KRLAVATRRKNRNFRHIEIYDL----------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE  324 (642)
Q Consensus       255 ~~l~~~~~~~~~~~~~i~~~d~----------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (642)
                      -.|+.     |...+.+.+|.+          ..++...++...+.|....|+...+++.      ...|-........ 
T Consensus       219 pliVS-----G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks------irVwDm~kRt~v~-  286 (1202)
T KOG0292|consen  219 PLIVS-----GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS------IRVWDMTKRTSVQ-  286 (1202)
T ss_pred             ceEEe-----cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc------EEEEeccccccee-
Confidence            65555     444557778777          2355666677777787766666654443      3333322111111 


Q ss_pred             eEEeeeCCC--ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497          325 LRMLRLNGS--FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERAT  402 (642)
Q Consensus       325 ~~~~~~~~~--~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  402 (642)
                       +..+..++  .++-+|..+.             +-.--++|-.......   ..+++.-+++.|+|+.        +..
T Consensus       287 -tfrrendRFW~laahP~lNL-------------fAAgHDsGm~VFkleR---Erpa~~v~~n~LfYvk--------d~~  341 (1202)
T KOG0292|consen  287 -TFRRENDRFWILAAHPELNL-------------FAAGHDSGMIVFKLER---ERPAYAVNGNGLFYVK--------DRF  341 (1202)
T ss_pred             -eeeccCCeEEEEEecCCcce-------------eeeecCCceEEEEEcc---cCceEEEcCCEEEEEc--------cce
Confidence             11111111  1223444443             2222233322222110   1233334567788876        445


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCeEEEEeC-CCCceeEEEEECC-CCccccceee
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKFLVFRSG-RSGHKNLFVLDAV-NGEFNGDIRQ  478 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~l~~~~~-~~g~~~l~~~d~~-~g~~~~~~~~  478 (642)
                      ++.+++..  .      ...   ....+....  .....+++++|-...+...++ .++...|+.+.-+ .|..  ..+.
T Consensus       342 i~~~d~~t--~------~d~---~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~--~~~~  408 (1202)
T KOG0292|consen  342 IRSYDLRT--Q------KDT---AVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVS--DGKD  408 (1202)
T ss_pred             EEeeeccc--c------ccc---eeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccC--Cchh
Confidence            55555544  1      111   222222211  134456788887777766654 3455677777655 2221  0112


Q ss_pred             CCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEE
Q 039497          479 LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF  558 (642)
Q Consensus       479 l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~  558 (642)
                      ...+++.  ...|-.-.+..++.....        ++.+-++..+..+.+....          ....+.+.-+|..|+.
T Consensus       409 ~~k~tG~--~a~fvarNrfavl~k~~~--------~v~ik~l~N~vtkkl~~~~----------~~~~IF~ag~g~lll~  468 (1202)
T KOG0292|consen  409 VKKGTGE--GALFVARNRFAVLDKSNE--------QVVIKNLKNKVTKKLLLPE----------STDDIFYAGTGNLLLR  468 (1202)
T ss_pred             hhcCCCC--ceEEEEecceEEEEecCc--------ceEEecccchhhhcccCcc----------cccceeeccCccEEEE
Confidence            2222221  234433333333333222        2666677665555443321          2345677777764443


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-eccCCCCCCCCcEEecCCceE
Q 039497          559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-RLTWNGYENGTPAWHPGNQLD  614 (642)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~s~dg~~~  614 (642)
                       +.+                  .|.++++..+... .+..  ..+....||.|++++
T Consensus       469 -~~~------------------~v~lfdvQq~~~~~si~~--s~vkyvvws~dm~~v  504 (1202)
T KOG0292|consen  469 -SPD------------------SVTLFDVQQKKKVGSIKV--SKVKYVVWSNDMSRV  504 (1202)
T ss_pred             -cCC------------------eEEEEEeecceEEEEEec--CceeEEEEcCccchh
Confidence             322                  6778888775533 2222  345678999998654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.78  E-value=9.5e-08  Score=91.84  Aligned_cols=229  Identities=17%  Similarity=0.097  Sum_probs=143.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      ...|-++...++....   ...|.+|+..+.+...+..    .+.+..+.|.+++++++..++       +...++|.++
T Consensus       180 ~v~~l~~sdtlatgg~---Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~-------d~~~r~Wnvd  249 (459)
T KOG0288|consen  180 DVEFLRNSDTLATGGS---DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN-------DKNLRLWNVD  249 (459)
T ss_pred             eeEEccCcchhhhcch---hhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC-------CCceeeeecc
Confidence            3466666555554322   2445556665555222211    566889999999999988764       7788999986


Q ss_pred             eecCCCCCCCCCccccceEEccccCCCCccCcEE---------------------------------CCCCCeE----EE
Q 039497          410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC---------------------------------SPDGKFL----VF  452 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------------------------------SpDg~~l----~~  452 (642)
                      .        ..     ....|+.+. ..+..+.|                                 |.+...+    .+
T Consensus       250 ~--------~r-----~~~TLsGHt-dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~  315 (459)
T KOG0288|consen  250 S--------LR-----LRHTLSGHT-DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDV  315 (459)
T ss_pred             c--------hh-----hhhhhcccc-cceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceee
Confidence            5        12     122222222 11111111                                 1111111    12


Q ss_pred             EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497          453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG  532 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  532 (642)
                      .+.. ....|..||..++..    .......+.+.++..+++|..|+..+.++.        |-++|+.+.+.++.....
T Consensus       316 ~SgH-~DkkvRfwD~Rs~~~----~~sv~~gg~vtSl~ls~~g~~lLsssRDdt--------l~viDlRt~eI~~~~sA~  382 (459)
T KOG0288|consen  316 ISGH-FDKKVRFWDIRSADK----TRSVPLGGRVTSLDLSMDGLELLSSSRDDT--------LKVIDLRTKEIRQTFSAE  382 (459)
T ss_pred             eecc-cccceEEEeccCCce----eeEeecCcceeeEeeccCCeEEeeecCCCc--------eeeeecccccEEEEeecc
Confidence            2221 234688899887764    444444467889999999999888866654        899999998887655421


Q ss_pred             CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-eccCCCC--CCCCcEEec
Q 039497          533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-RLTWNGY--ENGTPAWHP  609 (642)
Q Consensus       533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~~--~~~~~~~s~  609 (642)
                      -..    .......+.||||+.+++..+.++                 .||+|++.++++. ++.....  .+.+++|+|
T Consensus       383 g~k----~asDwtrvvfSpd~~YvaAGS~dg-----------------sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  383 GFK----CASDWTRVVFSPDGSYVAAGSADG-----------------SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP  441 (459)
T ss_pred             ccc----cccccceeEECCCCceeeeccCCC-----------------cEEEEEccCceEEEEeccCCCCcceEEEEEcC
Confidence            000    011346789999999999888765                 8999999888754 3333322  368999999


Q ss_pred             CCceEEeecCC
Q 039497          610 GNQLDLGKLRL  620 (642)
Q Consensus       610 dg~~~~~~~~~  620 (642)
                      -|.++++..+.
T Consensus       442 sG~~Llsadk~  452 (459)
T KOG0288|consen  442 SGSGLLSADKQ  452 (459)
T ss_pred             CCchhhcccCC
Confidence            99999887663

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.78  E-value=1.7e-06  Score=83.97  Aligned_cols=223  Identities=13%  Similarity=0.119  Sum_probs=144.1

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..++|+...++..+.   ...|+++.........+..  ...+..+...|.|++|+..++       ++...+.++..  
T Consensus       267 v~~~~~~~~v~~aSa---d~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~-------d~~w~Fsd~~~--  334 (506)
T KOG0289|consen  267 VKFHKDLDTVITASA---DEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN-------DGTWAFSDISS--  334 (506)
T ss_pred             EEeccchhheeecCC---cceEEeeccccccCccccccccccceeeeeccCCcEEEEecC-------CceEEEEEccC--
Confidence            366777765544332   3455555544333233222  667888889999999998874       55666666654  


Q ss_pred             CCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          413 DPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                            +.     ........ ........+|+|||-.+....   -+..|-+||+..+..   +..+..+.+.+..++|
T Consensus       335 ------g~-----~lt~vs~~~s~v~~ts~~fHpDgLifgtgt---~d~~vkiwdlks~~~---~a~Fpght~~vk~i~F  397 (506)
T KOG0289|consen  335 ------GS-----QLTVVSDETSDVEYTSAAFHPDGLIFGTGT---PDGVVKIWDLKSQTN---VAKFPGHTGPVKAISF  397 (506)
T ss_pred             ------Cc-----EEEEEeeccccceeEEeeEcCCceEEeccC---CCceEEEEEcCCccc---cccCCCCCCceeEEEe
Confidence                  22     33333332 113467789999995443322   234888999987765   6778888888999999


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      +.+|-||+...+++.        |.+||+..- ..+.+......        .+..+.|...|++|+...++-       
T Consensus       398 sENGY~Lat~add~~--------V~lwDLRKl~n~kt~~l~~~~--------~v~s~~fD~SGt~L~~~g~~l-------  454 (506)
T KOG0289|consen  398 SENGYWLATAADDGS--------VKLWDLRKLKNFKTIQLDEKK--------EVNSLSFDQSGTYLGIAGSDL-------  454 (506)
T ss_pred             ccCceEEEEEecCCe--------EEEEEehhhcccceeeccccc--------cceeEEEcCCCCeEEeeccee-------
Confidence            999999999988764        999999643 33333332211        357899999999998774321       


Q ss_pred             CCCCCCCCCCcEEEEEcCCCc---eeeccCCCCCCCCcEEecCCceEEeecC
Q 039497          571 SWPNQFQPYGDLYVVKLDGSG---LRRLTWNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~~~~~~---~~~lt~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                                .||.++-.++.   ...+..+.+....+.|...-+++++..+
T Consensus       455 ----------~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm  496 (506)
T KOG0289|consen  455 ----------QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM  496 (506)
T ss_pred             ----------EEEEEecccccceeeehhhhcccccceeeecccceEEeeccc
Confidence                      67766655544   3344445555567778777777766543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.77  E-value=5.5e-06  Score=82.53  Aligned_cols=132  Identities=11%  Similarity=-0.031  Sum_probs=82.5

Q ss_pred             CCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCC-CceeEeecCCC--cceEeeCCeEEEEEecCCCce
Q 039497          139 GVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDP-NKRVIVCERGG--WPTWSGDSTIYFHRQADDGWW  215 (642)
Q Consensus       139 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~  215 (642)
                      .....+++|.|+...|+|..             +..+++.+++-. +..+.-...+-  ...|++.+.++++. ++|-.+
T Consensus       145 ~~~v~c~~W~p~S~~vl~c~-------------g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sg-GED~kf  210 (737)
T KOG1524|consen  145 EESIRCARWAPNSNSIVFCQ-------------GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASG-GEDFRF  210 (737)
T ss_pred             CceeEEEEECCCCCceEEec-------------CCeEEEeecccccceeEEeccCcEEEEeecCccccceeec-CCceeE
Confidence            33456689999999999985             346788777543 33333333332  35999999888887 566655


Q ss_pred             EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCE
Q 039497          216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEF  295 (642)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~  295 (642)
                      .||  |..+.        ....-..+++.+.+++|.||-.+++.  ...     .++   +.....+++...+||+||+.
T Consensus       211 KvW--D~~G~--------~Lf~S~~~ey~ITSva~npd~~~~v~--S~n-----t~R---~~~p~~GSifnlsWS~DGTQ  270 (737)
T KOG1524|consen  211 KIW--DAQGA--------NLFTSAAEEYAITSVAFNPEKDYLLW--SYN-----TAR---FSSPRVGSIFNLSWSADGTQ  270 (737)
T ss_pred             Eee--cccCc--------ccccCChhccceeeeeeccccceeee--eee-----eee---ecCCCccceEEEEEcCCCce
Confidence            665  33332        22222344677889999999433333  111     222   44445567788899999999


Q ss_pred             EEEEEeecC
Q 039497          296 IGYHRFRGE  304 (642)
Q Consensus       296 l~~~~~~~~  304 (642)
                      ++.....|.
T Consensus       271 ~a~gt~~G~  279 (737)
T KOG1524|consen  271 ATCGTSTGQ  279 (737)
T ss_pred             eeccccCce
Confidence            877544433

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.76  E-value=1.1e-05  Score=84.87  Aligned_cols=266  Identities=16%  Similarity=0.088  Sum_probs=155.0

Q ss_pred             eecCCCCEEEEEEeecCCCCCCcccceEeeccCCCc-eeEEeeeCCCccEEcCCCCEEEEEecCCC--------ceeEEE
Q 039497          288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVK-ELRMLRLNGSFPSFSPDGGLIVFNHDFEL--------NAGIKI  358 (642)
Q Consensus       288 ~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~--------~~~l~~  358 (642)
                      .+||||++++|....++.   ....+.+..+..... .-.+.......+.|++||+.++|......        ...||+
T Consensus       130 ~~Spdg~~la~~~s~~G~---e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  130 SVSPDGKRLAYSLSDGGS---EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EETTTSSEEEEEEEETTS---SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eECCCCCEEEEEecCCCC---ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            689999999998766653   223445555544411 11111222233899999999999775432        678999


Q ss_pred             EECCCCCee--EEee---cCC-ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497          359 AKSDGSKRW--TLIK---DRT-AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK  432 (642)
Q Consensus       359 ~d~~~~~~~--~l~~---~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (642)
                      +.+.+....  .+..   ... ...+..|+|+++|++....    ... ...+|.++.  .     .+.......+.+..
T Consensus       207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~----~~~-~s~v~~~d~--~-----~~~~~~~~~~~l~~  274 (414)
T PF02897_consen  207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS----GTS-ESEVYLLDL--D-----DGGSPDAKPKLLSP  274 (414)
T ss_dssp             EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES----SSS-EEEEEEEEC--C-----CTTTSS-SEEEEEE
T ss_pred             EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc----ccc-CCeEEEEec--c-----ccCCCcCCcEEEeC
Confidence            999877654  3333   222 4477889999999887753    122 467777776  2     11000014555554


Q ss_pred             cCCCCccCcEECCCCCeEEEEeCCC-CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497          433 EETGNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE  511 (642)
Q Consensus       433 ~~~~~~~~~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~  511 (642)
                      ...+....+..  .|..+++.++++ ....|+.+++.+.........+........--.++..+++|++....+     .
T Consensus       275 ~~~~~~~~v~~--~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-----~  347 (414)
T PF02897_consen  275 REDGVEYYVDH--HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-----G  347 (414)
T ss_dssp             SSSS-EEEEEE--ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET-----T
T ss_pred             CCCceEEEEEc--cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC-----C
Confidence            33122222222  266676666654 356999999987652000124444333223335566677888777765     5


Q ss_pred             ceeEEEEeCC-CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          512 AFSLYVIKPD-GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       512 ~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                      ..+|+++++. +.....+.... .+       .+......+++..+.|....-..             ...+|.+|+.++
T Consensus       348 ~~~l~v~~~~~~~~~~~~~~p~-~g-------~v~~~~~~~~~~~~~~~~ss~~~-------------P~~~y~~d~~t~  406 (414)
T PF02897_consen  348 SSRLRVYDLDDGKESREIPLPE-AG-------SVSGVSGDFDSDELRFSYSSFTT-------------PPTVYRYDLATG  406 (414)
T ss_dssp             EEEEEEEETT-TEEEEEEESSS-SS-------EEEEEES-TT-SEEEEEEEETTE-------------EEEEEEEETTTT
T ss_pred             ccEEEEEECCCCcEEeeecCCc-ce-------EEeccCCCCCCCEEEEEEeCCCC-------------CCEEEEEECCCC
Confidence            7889999999 55555554432 22       23445556788888887764332             349999999999


Q ss_pred             ceeecc
Q 039497          591 GLRRLT  596 (642)
Q Consensus       591 ~~~~lt  596 (642)
                      +.+.+.
T Consensus       407 ~~~~~k  412 (414)
T PF02897_consen  407 ELTLLK  412 (414)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            887764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.75  E-value=1.2e-06  Score=86.28  Aligned_cols=210  Identities=15%  Similarity=0.163  Sum_probs=138.4

Q ss_pred             ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      .+.+-+||+......+...  ...+..+.+.-...+|+-++.       .+.+.|..+.+        +.     ....+
T Consensus       100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~-------gGdiiih~~~t--------~~-----~tt~f  159 (673)
T KOG4378|consen  100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD-------GGDIIIHGTKT--------KQ-----KTTTF  159 (673)
T ss_pred             CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc-------CCcEEEEeccc--------Cc-----cccce
Confidence            3556667776443322222  345677788888888988874       46666666655        22     45556


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      .......+..+.+||--+.++.....+|  .+.+||++ |.. ........+......+.|||....|+..-.-.     
T Consensus       160 ~~~sgqsvRll~ys~skr~lL~~asd~G--~VtlwDv~-g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~D-----  230 (673)
T KOG4378|consen  160 TIDSGQSVRLLRYSPSKRFLLSIASDKG--AVTLWDVQ-GMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYD-----  230 (673)
T ss_pred             ecCCCCeEEEeecccccceeeEeeccCC--eEEEEecc-CCC-cccchhhhccCCcCcceecCCccceEEEeccc-----
Confidence            5554345668899999999988877665  67788887 442 01122334555667789999887766655433     


Q ss_pred             CceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          511 EAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                        ..|++||....+.. .|+-   ..       +...++|+++|.+|+.....+                 +|+.||+.+
T Consensus       231 --kki~~yD~~s~~s~~~l~y---~~-------Plstvaf~~~G~~L~aG~s~G-----------------~~i~YD~R~  281 (673)
T KOG4378|consen  231 --KKINIYDIRSQASTDRLTY---SH-------PLSTVAFSECGTYLCAGNSKG-----------------ELIAYDMRS  281 (673)
T ss_pred             --ceEEEeecccccccceeee---cC-------CcceeeecCCceEEEeecCCc-----------------eEEEEeccc
Confidence              34999999765443 3332   22       557899999999998877654                 899999987


Q ss_pred             Cc--eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          590 SG--LRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       590 ~~--~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      ..  ++.+..+...+..++|-+-- .+++..++.
T Consensus       282 ~k~Pv~v~sah~~sVt~vafq~s~-tvltkssln  314 (673)
T KOG4378|consen  282 TKAPVAVRSAHDASVTRVAFQPSP-TVLTKSSLN  314 (673)
T ss_pred             CCCCceEeeecccceeEEEeeecc-eeeeccccc
Confidence            54  55666677778888886654 555554443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=2.6e-07  Score=89.36  Aligned_cols=191  Identities=12%  Similarity=0.055  Sum_probs=120.4

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..++++||..|+....   ...+.+++...-.  .........+.++.|||||+.|++++        ....++|+++. 
T Consensus       149 ~vaf~~~gs~latgg~---dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig--------~d~~~VW~~~~-  216 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGT---DGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIG--------ADSARVWSVNT-  216 (398)
T ss_pred             EEEEcCCCCEeeeccc---cceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEec--------CCceEEEEecc-
Confidence            4588999998888543   3455555532222  12222267899999999999999987        34889999976 


Q ss_pred             cCCCCCCCCCccccceEEcc-ccCCCCccCcEECCCC---CeEEEEeCCC-CceeEEEEECCCCccccceeeCCCCCCcc
Q 039497          412 LDPSDDNNREEIPCDVKILT-KEETGNNAFPSCSPDG---KFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDGPWID  486 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~SpDg---~~l~~~~~~~-g~~~l~~~d~~~g~~~~~~~~l~~~~~~~  486 (642)
                             +.     .....+ ...+.......|+-|+   ...+++.... +...++..-+..+....+..+.......+
T Consensus       217 -------g~-----~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si  284 (398)
T KOG0771|consen  217 -------GA-----ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI  284 (398)
T ss_pred             -------Cc-----hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence                   32     444444 2222455667888887   4444444322 22222222222221000124444444456


Q ss_pred             cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      ..++.|+||++++....++.        |-+++...-+.-++.+..+..       -++.+.|+||.++++-++.+.
T Consensus       285 Ssl~VS~dGkf~AlGT~dGs--------Vai~~~~~lq~~~~vk~aH~~-------~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  285 SSLAVSDDGKFLALGTMDGS--------VAIYDAKSLQRLQYVKEAHLG-------FVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             eeEEEcCCCcEEEEeccCCc--------EEEEEeceeeeeEeehhhhee-------eeeeEEEcCCcCcccccccCC
Confidence            78899999999999998764        788887665555555555555       678999999999998776654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.74  E-value=0.00023  Score=80.91  Aligned_cols=112  Identities=15%  Similarity=0.103  Sum_probs=69.5

Q ss_pred             CCceeCCCCcEEEEEecCCCCCCCCCCCC-eeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEecCCCceEEE
Q 039497          143 YSPSVSYSGKFIAVASYESRPWPGEFHEL-NTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQADDGWWSIF  218 (642)
Q Consensus       143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~~~g~~~l~  218 (642)
                      ...+|=.||+|+|...-..       ..+ ...|.+|+.+ |...-...+..   +.++|.|.|.++++.....+...|.
T Consensus       213 ~~ISWRGDG~yFAVss~~~-------~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv  284 (928)
T PF04762_consen  213 VRISWRGDGEYFAVSSVEP-------ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV  284 (928)
T ss_pred             eEEEECCCCcEEEEEEEEc-------CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence            4568999999999776422       112 4677788876 33333322222   3569999998777764445555666


Q ss_pred             EEecCCCcccccCCcccee--eC--CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497          219 RVSFPENLEFLGFPIAPTR--VT--PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL  276 (642)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~--l~--~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~  276 (642)
                      -+...|-        +-..  +.  ..+..+..+.|++|+..|++...+      .+.+|..
T Consensus       285 FfErNGL--------rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~------~vqLWt~  332 (928)
T PF04762_consen  285 FFERNGL--------RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED------RVQLWTR  332 (928)
T ss_pred             EEecCCc--------EeeeEecCCCCCCceeeEEEECCCCCEEEEEecC------CceEEEe
Confidence            6655543        1111  11  234467789999999999885532      3777766

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.73  E-value=2.9e-06  Score=79.32  Aligned_cols=199  Identities=15%  Similarity=0.105  Sum_probs=117.0

Q ss_pred             cCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      -|+...++..+.   ..-|.++|.-+++.+....       -....++.|||||.+|+..-        ...++++++..
T Consensus       120 qP~t~l~a~ssr---~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--------krcirvFdt~R  188 (406)
T KOG2919|consen  120 QPSTNLFAVSSR---DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--------KRCIRVFDTSR  188 (406)
T ss_pred             CCccceeeeccc---cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--------cceEEEeeccC
Confidence            455554444332   4668888988887655433       22456889999999998765        56788888754


Q ss_pred             ecCCCCCCCCCccccceE-EccccC---CCCccCcEECCCCC-eEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497          411 QLDPSDDNNREEIPCDVK-ILTKEE---TGNNAFPSCSPDGK-FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI  485 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~  485 (642)
                        .     |...   ... .++...   .+.+..++|||-.. .++..+.. ....||..+  .+..   +..|-.+.+.
T Consensus       189 --p-----Gr~c---~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~giy~~~--~~~p---l~llggh~gG  252 (406)
T KOG2919|consen  189 --P-----GRDC---PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRVGIYNDD--GRRP---LQLLGGHGGG  252 (406)
T ss_pred             --C-----CCCC---cchhhhhcccccccceeeeeeccCCCCcceeeeccc-ceeeeEecC--CCCc---eeeecccCCC
Confidence              2     2211   111 111111   14566789999654 55554431 223455544  3443   5667777788


Q ss_pred             ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                      ++++.|.+||++|+..+....       .|..||+............+.++ .+   .-...-..|+|++|+-...++  
T Consensus       253 vThL~~~edGn~lfsGaRk~d-------kIl~WDiR~~~~pv~~L~rhv~~-TN---QRI~FDld~~~~~LasG~tdG--  319 (406)
T KOG2919|consen  253 VTHLQWCEDGNKLFSGARKDD-------KILCWDIRYSRDPVYALERHVGD-TN---QRILFDLDPKGEILASGDTDG--  319 (406)
T ss_pred             eeeEEeccCcCeecccccCCC-------eEEEEeehhccchhhhhhhhccC-cc---ceEEEecCCCCceeeccCCCc--
Confidence            999999999998877666443       49999986543221111111110 00   111234478899887766654  


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEcCC-Cc
Q 039497          566 MAEPVSWPNQFQPYGDLYVVKLDG-SG  591 (642)
Q Consensus       566 ~~~~~~~~~~~~~~~~l~~~~~~~-~~  591 (642)
                                     .|.+||+.+ +.
T Consensus       320 ---------------~V~vwdlk~~gn  331 (406)
T KOG2919|consen  320 ---------------SVRVWDLKDLGN  331 (406)
T ss_pred             ---------------cEEEEecCCCCC
Confidence                           677888876 44

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.72  E-value=4.3e-06  Score=77.93  Aligned_cols=271  Identities=17%  Similarity=0.176  Sum_probs=161.4

Q ss_pred             cccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce
Q 039497          245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE  324 (642)
Q Consensus       245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (642)
                      +....||+-|.+||+.-.+     ..+-+||+.+...+..                                 +.+... 
T Consensus        26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~---------------------------------lsaH~~-   66 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARM---------------------------------LSAHVR-   66 (405)
T ss_pred             cceEEeccCcceeeeeccC-----CcEEEEEccccchhhh---------------------------------hhcccc-
Confidence            6678899999999984443     3888888844331111                                 001111 


Q ss_pred             eEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeE
Q 039497          325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATV  403 (642)
Q Consensus       325 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  403 (642)
                            ....++||+||++|+..+.   .+.+-++|+-.+.. .++..+..+....|.|-.+..+++..-      +...
T Consensus        67 ------pi~sl~WS~dgr~LltsS~---D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~------~~sp  131 (405)
T KOG1273|consen   67 ------PITSLCWSRDGRKLLTSSR---DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIM------EESP  131 (405)
T ss_pred             ------ceeEEEecCCCCEeeeecC---CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEe------cCCc
Confidence                  1135699999998887654   47788889876654 344447788899999966555544421      2234


Q ss_pred             EEEEEEeecCCCCCCCCCccccceEEccccCCC-C---ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC
Q 039497          404 QIARVSFQLDPSDDNNREEIPCDVKILTKEETG-N---NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL  479 (642)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~---~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l  479 (642)
                      .+..+..         .     +.+.|.....+ .   ..+..|.+-|++|+...   +++.|.+++..+-+.+. .-.+
T Consensus       132 ~vi~~s~---------~-----~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt---sKGkllv~~a~t~e~va-s~ri  193 (405)
T KOG1273|consen  132 VVIDFSD---------P-----KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT---SKGKLLVYDAETLECVA-SFRI  193 (405)
T ss_pred             EEEEecC---------C-----ceeeccCCCccccccccccccccCCCCEEEEec---CcceEEEEecchheeee-eeee
Confidence            4444432         1     33444333211 1   22235889999998765   34478888877655310 0112


Q ss_pred             CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-------CceEEeeec-CCCCCCCcccccccceEEcC
Q 039497          480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-------SGLRRIHVA-GPEGSGDVDRERINHVCFSA  551 (642)
Q Consensus       480 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-------~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~  551 (642)
                      +. ...+.++.++-.|+.|++...+..        |..|++..       ++.+...+. +..+     +..-....||.
T Consensus       194 ts-~~~IK~I~~s~~g~~liiNtsDRv--------IR~ye~~di~~~~r~~e~e~~~K~qDvVN-----k~~Wk~ccfs~  259 (405)
T KOG1273|consen  194 TS-VQAIKQIIVSRKGRFLIINTSDRV--------IRTYEISDIDDEGRDGEVEPEHKLQDVVN-----KLQWKKCCFSG  259 (405)
T ss_pred             ch-heeeeEEEEeccCcEEEEecCCce--------EEEEehhhhcccCccCCcChhHHHHHHHh-----hhhhhheeecC
Confidence            22 245677899999999999887653        66666531       122111110 0000     00113578999


Q ss_pred             CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC-CC-CCCCcEEecCCceEEee
Q 039497          552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN-GY-ENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       552 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~-~~-~~~~~~~s~dg~~~~~~  617 (642)
                      ||.+++..+...                -.||.|....|.+.++..+ .+ ...++.|+|=.-.+++.
T Consensus       260 dgeYv~a~s~~a----------------HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  260 DGEYVCAGSARA----------------HALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             CccEEEeccccc----------------eeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence            999998877432                2899999887776666543 32 34577788877666665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=2.4e-07  Score=89.65  Aligned_cols=183  Identities=14%  Similarity=0.030  Sum_probs=119.1

Q ss_pred             eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC
Q 039497          376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG  455 (642)
Q Consensus       376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~  455 (642)
                      ..++|++||..|+...       .++.+++|....  .      .     .......+. ..+..+.|||||+.|++.+.
T Consensus       148 k~vaf~~~gs~latgg-------~dg~lRv~~~Ps--~------~-----t~l~e~~~~-~eV~DL~FS~dgk~lasig~  206 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGG-------TDGTLRVWEWPS--M------L-----TILEEIAHH-AEVKDLDFSPDGKFLASIGA  206 (398)
T ss_pred             eEEEEcCCCCEeeecc-------ccceEEEEecCc--c------h-----hhhhhHhhc-CccccceeCCCCcEEEEecC
Confidence            5789999999998875       378999999654  1      1     233333444 67889999999999999874


Q ss_pred             CCCceeEEEEECCCCccccceeeCCCC--CCcccceeEecCC---CEEEEEecCCCCCCCCceeEEEEeCCCC----ceE
Q 039497          456 RSGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTMPSWSPKG---DLIAFSSNRHNPDNVEAFSLYVIKPDGS----GLR  526 (642)
Q Consensus       456 ~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~~~~spdG---~~l~~~~~~~~~~~~~~~~l~~~d~~~~----~~~  526 (642)
                      .    ...+|++++|..   +..++..  ++....+.|+.|+   .+.+++.....    +...++...+-.+    +.+
T Consensus       207 d----~~~VW~~~~g~~---~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~----~~v~~~~~~~w~~~~~l~~~  275 (398)
T KOG0771|consen  207 D----SARVWSVNTGAA---LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPG----GGVRLCDISLWSGSNFLRLR  275 (398)
T ss_pred             C----ceEEEEeccCch---hhhcCCcccchhhhhceecccCCCceEEEEEecCCC----CceeEEEeeeeccccccchh
Confidence            3    677888888865   5555532  2345667898887   54555544432    2222222222112    122


Q ss_pred             EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC--CCCCCCC
Q 039497          527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW--NGYENGT  604 (642)
Q Consensus       527 ~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~--~~~~~~~  604 (642)
                      +... ...        .+..+..|+||++++..+.++                 .+-+++...-+..++..  |...++.
T Consensus       276 ~~~~-~~~--------siSsl~VS~dGkf~AlGT~dG-----------------sVai~~~~~lq~~~~vk~aH~~~VT~  329 (398)
T KOG0771|consen  276 KKIK-RFK--------SISSLAVSDDGKFLALGTMDG-----------------SVAIYDAKSLQRLQYVKEAHLGFVTG  329 (398)
T ss_pred             hhhh-ccC--------cceeEEEcCCCcEEEEeccCC-----------------cEEEEEeceeeeeEeehhhheeeeee
Confidence            2211 111        467899999999999998865                 56666655544444432  5678899


Q ss_pred             cEEecCCceEEe
Q 039497          605 PAWHPGNQLDLG  616 (642)
Q Consensus       605 ~~~s~dg~~~~~  616 (642)
                      +.|+||.++.++
T Consensus       330 ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  330 LTFSPDSRYLAS  341 (398)
T ss_pred             EEEcCCcCcccc
Confidence            999999998876

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.70  E-value=6.1e-06  Score=73.83  Aligned_cols=218  Identities=14%  Similarity=0.094  Sum_probs=134.4

Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      +.+.|..+++-.   .+...++++|+.+++..+-..  .+.+..+.|..+...++-.+.       +..+++|+-..  .
T Consensus        66 ~~s~Dnskf~s~---GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf-------D~s~r~wDCRS--~  133 (307)
T KOG0316|consen   66 ALSSDNSKFASC---GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSF-------DSSVRLWDCRS--R  133 (307)
T ss_pred             cccccccccccC---CCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccc-------cceeEEEEccc--C
Confidence            456666666553   456789999999988654433  566888999877766655553       78999999866  2


Q ss_pred             CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEec
Q 039497          414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP  493 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp  493 (642)
                           .- +   .++.|.... ..+..+.++  +..|+..+ -+|  .+..+|+..|+.     ........++...||+
T Consensus       134 -----s~-e---PiQildea~-D~V~Si~v~--~heIvaGS-~DG--tvRtydiR~G~l-----~sDy~g~pit~vs~s~  193 (307)
T KOG0316|consen  134 -----SF-E---PIQILDEAK-DGVSSIDVA--EHEIVAGS-VDG--TVRTYDIRKGTL-----SSDYFGHPITSVSFSK  193 (307)
T ss_pred             -----CC-C---ccchhhhhc-CceeEEEec--ccEEEeec-cCC--cEEEEEeeccee-----ehhhcCCcceeEEecC
Confidence                 11 1   334444333 445555554  33444443 334  678888887763     2222334577889999


Q ss_pred             CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497          494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP  573 (642)
Q Consensus       494 dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~  573 (642)
                      ||+.++..+.+..        |.+.|-++|++-.... ++.+.     +.-.+..++..-..+ +...+.+         
T Consensus       194 d~nc~La~~l~st--------lrLlDk~tGklL~sYk-Ghkn~-----eykldc~l~qsdthV-~sgSEDG---------  249 (307)
T KOG0316|consen  194 DGNCSLASSLDST--------LRLLDKETGKLLKSYK-GHKNM-----EYKLDCCLNQSDTHV-FSGSEDG---------  249 (307)
T ss_pred             CCCEEEEeeccce--------eeecccchhHHHHHhc-ccccc-----eeeeeeeecccceeE-EeccCCc---------
Confidence            9999888887765        8999998887644333 22110     011234555444444 4443332         


Q ss_pred             CCCCCCCcEEEEEcCCC-ceeeccCCCCC-CCCcEEecCCceEEe
Q 039497          574 NQFQPYGDLYVVKLDGS-GLRRLTWNGYE-NGTPAWHPGNQLDLG  616 (642)
Q Consensus       574 ~~~~~~~~l~~~~~~~~-~~~~lt~~~~~-~~~~~~s~dg~~~~~  616 (642)
                             .+|.||+... .+..+...... +.++.+.|--..|++
T Consensus       250 -------~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~  287 (307)
T KOG0316|consen  250 -------KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFIT  287 (307)
T ss_pred             -------eEEEEEeccceeeeeeccCCceeEEeeecccCccceeE
Confidence                   8999997654 35555555443 578889988755543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.70  E-value=2.2e-07  Score=89.43  Aligned_cols=263  Identities=13%  Similarity=0.040  Sum_probs=148.7

Q ss_pred             CCccccceeecCCcEEEEEEeccCCceeeEEEEEee----------cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcc
Q 039497          242 GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT----------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQST  311 (642)
Q Consensus       242 ~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  311 (642)
                      ...+....|-++...|+.     ++....|.+|++.          .+..+.+....+-++++++.-...++.      .
T Consensus       175 ~gev~~v~~l~~sdtlat-----gg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~------~  243 (459)
T KOG0288|consen  175 EGEVHDVEFLRNSDTLAT-----GGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN------L  243 (459)
T ss_pred             ccccceeEEccCcchhhh-----cchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc------e
Confidence            334555555555455555     3344467777772          233445666777788887666544443      2


Q ss_pred             cceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe-ecCCceeeeeecCCCEEEEE
Q 039497          312 IPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI-KDRTAFYNSWSPTEKHVIYT  390 (642)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~  390 (642)
                      .+|-+.--....++....-......|.....+++-.   .....|-.+|+.......-. ......++.-+   ...++.
T Consensus       244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg---s~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~S  317 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG---SADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVIS  317 (459)
T ss_pred             eeeeccchhhhhhhcccccceeeehhhccccceeec---cccchhhhhhhhhhheeccccccccccceEec---ceeeee
Confidence            233222111111111100111122333333332221   22345666666654432221 13334444443   223333


Q ss_pred             EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC
Q 039497          391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG  470 (642)
Q Consensus       391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g  470 (642)
                      ..      .+.++++|++..  .      .     ....+.. . +.+..+..++||..|...+.++   .|-++|+.+.
T Consensus       318 gH------~DkkvRfwD~Rs--~------~-----~~~sv~~-g-g~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~  373 (459)
T KOG0288|consen  318 GH------FDKKVRFWDIRS--A------D-----KTRSVPL-G-GRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTK  373 (459)
T ss_pred             cc------cccceEEEeccC--C------c-----eeeEeec-C-cceeeEeeccCCeEEeeecCCC---ceeeeecccc
Confidence            32      367799999866  1      1     2333333 3 5888999999999988765333   6888898877


Q ss_pred             ccccceeeC-CCC----CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccccc
Q 039497          471 EFNGDIRQL-TDG----PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN  545 (642)
Q Consensus       471 ~~~~~~~~l-~~~----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~  545 (642)
                      +.    .+. ...    ........|||||.|++..+.++.        ||+|++.+++.+.+.......      ..+.
T Consensus       374 eI----~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs--------v~iW~v~tgKlE~~l~~s~s~------~aI~  435 (459)
T KOG0288|consen  374 EI----RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS--------VYIWSVFTGKLEKVLSLSTSN------AAIT  435 (459)
T ss_pred             cE----EEEeeccccccccccceeEECCCCceeeeccCCCc--------EEEEEccCceEEEEeccCCCC------cceE
Confidence            64    443 221    123466799999999999888775        999999999988776543221      0367


Q ss_pred             ceEEcCCCCEEEEEEecC
Q 039497          546 HVCFSADGEWLLFTANLG  563 (642)
Q Consensus       546 ~~~~S~Dg~~l~~~~~~~  563 (642)
                      .++|+|.|+.|+..+.+.
T Consensus       436 s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  436 SLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             EEEEcCCCchhhcccCCc
Confidence            899999999998776543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.69  E-value=9e-06  Score=93.80  Aligned_cols=234  Identities=12%  Similarity=0.093  Sum_probs=137.1

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec---------------CCceeeeeecCCCEEEEEEcCCCccc
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD---------------RTAFYNSWSPTEKHVIYTSTGPIFQS  398 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~---------------~~~~~~~~spdg~~l~~~~~~~~~~~  398 (642)
                      .+++++++..|++..  .+...|.+++.++.....+...               .....++++++++.|+++..      
T Consensus       572 gvavd~~~g~lyVaD--s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt------  643 (1057)
T PLN02919        572 KLAIDLLNNRLFISD--SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT------  643 (1057)
T ss_pred             eEEEECCCCeEEEEE--CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC------
Confidence            356777666565544  4567888999877654333220               12467789999888877763      


Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCccccceEEcccc----------------CCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497          399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE----------------ETGNNAFPSCSPDGKFLVFRSGRSGHKNL  462 (642)
Q Consensus       399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~~SpDg~~l~~~~~~~g~~~l  462 (642)
                      ....++.++...         +     ....+...                .......++++|++..|+++..  +..+|
T Consensus       644 ~n~~Ir~id~~~---------~-----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--~~~~I  707 (1057)
T PLN02919        644 ENHALREIDFVN---------E-----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--GQHQI  707 (1057)
T ss_pred             CCceEEEEecCC---------C-----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--CCCeE
Confidence            234444444322         1     22222110                0012345789997777776654  44589


Q ss_pred             EEEECCCCccccceeeCCCC---------------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          463 FVLDAVNGEFNGDIRQLTDG---------------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       463 ~~~d~~~g~~~~~~~~l~~~---------------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                      ++++..+|..    ..+...               -.....++++|||++|+++....       ..|.++|++++....
T Consensus       708 ~v~d~~~g~v----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-------~~Irv~D~~tg~~~~  776 (1057)
T PLN02919        708 WEYNISDGVT----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-------SSIRALDLKTGGSRL  776 (1057)
T ss_pred             EEEECCCCeE----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-------CeEEEEECCCCcEEE
Confidence            9999887753    322110               01224578999999888887654       349999998776543


Q ss_pred             eeecCC------------CCC-CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceee
Q 039497          528 IHVAGP------------EGS-GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR  594 (642)
Q Consensus       528 l~~~~~------------~~~-~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  594 (642)
                      +.....            .+. .......+..+++++||+ ||++....                ..|.+++.+++.+..
T Consensus       777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N----------------~rIrviD~~tg~v~t  839 (1057)
T PLN02919        777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYN----------------HKIKKLDPATKRVTT  839 (1057)
T ss_pred             EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCC----------------CEEEEEECCCCeEEE
Confidence            321000            000 000011345788999997 55544332                289999998887665


Q ss_pred             ccCCC--------------CCCCCcEEecCCceEEeecC
Q 039497          595 LTWNG--------------YENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       595 lt~~~--------------~~~~~~~~s~dg~~~~~~~~  619 (642)
                      +...+              .....+++++||++|++...
T Consensus       840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence            55322              12356799999998887643

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.68  E-value=3.1e-06  Score=83.43  Aligned_cols=261  Identities=12%  Similarity=0.087  Sum_probs=162.4

Q ss_pred             ccccceeecCCc-EEEEEEeccCCceeeEEEEEeecC--------CCCcccCCeecCCCCEEEEEEeecCCCCCCcccce
Q 039497          244 HCFTPAAFHDGK-RLAVATRRKNRNFRHIEIYDLTLN--------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH  314 (642)
Q Consensus       244 ~~~~~~~SpdG~-~l~~~~~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~  314 (642)
                      .+..+.|||.-- .++++..      ..+.+|+..+.        .........+-.||+.++..-..|-.        .
T Consensus        28 ~vssl~fsp~~P~d~aVt~S------~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V--------~   93 (487)
T KOG0310|consen   28 SVSSLCFSPKHPYDFAVTSS------VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHV--------K   93 (487)
T ss_pred             cceeEecCCCCCCceEEecc------cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcE--------E
Confidence            466677777332 2444322      15667766211        12223455677888877765333321        1


Q ss_pred             EeeccCC--CceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEE
Q 039497          315 LEPVASP--VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIY  389 (642)
Q Consensus       315 ~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~  389 (642)
                      +...+..  ...+...+.......|+|+++.++.....+  ..+.++|+++... ++..   ...+....|+|-...+++
T Consensus        94 vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd--~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivv  170 (487)
T KOG0310|consen   94 VFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD--KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVV  170 (487)
T ss_pred             EeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC--ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEE
Confidence            1112221  111111122223457899888776655433  3445556666664 4332   567888999998888877


Q ss_pred             EEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497          390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN  469 (642)
Q Consensus       390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~  469 (642)
                      +..      =++.+++|+...  .     +.     ....+..+  ..+..+-+-|.|..|+.++    ...+-+||+.+
T Consensus       171 tGs------YDg~vrl~DtR~--~-----~~-----~v~elnhg--~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~  226 (487)
T KOG0310|consen  171 TGS------YDGKVRLWDTRS--L-----TS-----RVVELNHG--CPVESVLALPSGSLIASAG----GNSVKVWDLTT  226 (487)
T ss_pred             ecC------CCceEEEEEecc--C-----Cc-----eeEEecCC--CceeeEEEcCCCCEEEEcC----CCeEEEEEecC
Confidence            763      278999999977  2     11     33444333  4677788899998888664    35899999986


Q ss_pred             CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE
Q 039497          470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF  549 (642)
Q Consensus       470 g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  549 (642)
                      |..  .+....++.-.+++..+..|+..|+-.+-++.        +.++|.  ...+.+......+       ++.+++.
T Consensus       227 G~q--ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~--------VKVfd~--t~~Kvv~s~~~~~-------pvLsiav  287 (487)
T KOG0310|consen  227 GGQ--LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH--------VKVFDT--TNYKVVHSWKYPG-------PVLSIAV  287 (487)
T ss_pred             Cce--ehhhhhcccceEEEEEeecCCceEeecccccc--------eEEEEc--cceEEEEeeeccc-------ceeeEEe
Confidence            652  02333345567888999999999988887764        788884  4566666656666       7889999


Q ss_pred             cCCCCEEEEEEecCC
Q 039497          550 SADGEWLLFTANLGA  564 (642)
Q Consensus       550 S~Dg~~l~~~~~~~~  564 (642)
                      |||++.++..-.++.
T Consensus       288 s~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  288 SPDDQTVVIGMSNGL  302 (487)
T ss_pred             cCCCceEEEecccce
Confidence            999999998876654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.67  E-value=1.9e-05  Score=76.37  Aligned_cols=186  Identities=23%  Similarity=0.285  Sum_probs=110.3

Q ss_pred             EEc-CCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          336 SFS-PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       336 ~~s-pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .+. ++|+ +++...    ..+.++|.++++.+.+...       .....+++.|+|+ |+++............-.+|.
T Consensus        46 ~~~~~~g~-l~v~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   46 AFDRPDGR-LYVADS----GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEECTTSE-EEEEET----TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEE
T ss_pred             EEEccCCE-EEEEEc----CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEE
Confidence            455 5654 555432    4556669888877666551       2355789999999 666654321111111167888


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--CCccccceee---CCCC
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NGEFNGDIRQ---LTDG  482 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~~~~~~~---l~~~  482 (642)
                      ++.        .+     +...+...- .....++|+|||+.|+++....  ..||+++++  +++. ...+.   +...
T Consensus       120 ~~~--------~~-----~~~~~~~~~-~~pNGi~~s~dg~~lyv~ds~~--~~i~~~~~~~~~~~~-~~~~~~~~~~~~  182 (246)
T PF08450_consen  120 IDP--------DG-----KVTVVADGL-GFPNGIAFSPDGKTLYVADSFN--GRIWRFDLDADGGEL-SNRRVFIDFPGG  182 (246)
T ss_dssp             EET--------TS-----EEEEEEEEE-SSEEEEEEETTSSEEEEEETTT--TEEEEEEEETTTCCE-EEEEEEEE-SSS
T ss_pred             ECC--------CC-----eEEEEecCc-ccccceEECCcchheeeccccc--ceeEEEeccccccce-eeeeeEEEcCCC
Confidence            877        33     444444333 4566799999999998877643  468888885  3311 10122   2222


Q ss_pred             CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE-cCCCCEEEEEEe
Q 039497          483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF-SADGEWLLFTAN  561 (642)
Q Consensus       483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-S~Dg~~l~~~~~  561 (642)
                      .+....+++.++|+ |+.+....       ..|++++.++.....+... ..        .+..++| -+|.+.|++++.
T Consensus       183 ~g~pDG~~vD~~G~-l~va~~~~-------~~I~~~~p~G~~~~~i~~p-~~--------~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  183 PGYPDGLAVDSDGN-LWVADWGG-------GRIVVFDPDGKLLREIELP-VP--------RPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             SCEEEEEEEBTTS--EEEEEETT-------TEEEEEETTSCEEEEEE-S-SS--------SEEEEEEESTTSSEEEEEEB
T ss_pred             CcCCCcceEcCCCC-EEEEEcCC-------CEEEEECCCccEEEEEcCC-CC--------CEEEEEEECCCCCEEEEEeC
Confidence            22345679999997 45544332       2499999996555555543 11        4678999 578899988864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=98.67  E-value=1.6e-07  Score=84.45  Aligned_cols=188  Identities=9%  Similarity=0.019  Sum_probs=130.4

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      ...+..++|+.|.++|+....       ..-+++++++.+       ..     .++.+..+. +.+..+.|-...+.|+
T Consensus       100 khivk~~af~~ds~~lltgg~-------ekllrvfdln~p-------~A-----pp~E~~ght-g~Ir~v~wc~eD~~iL  159 (334)
T KOG0278|consen  100 KHIVKAVAFSQDSNYLLTGGQ-------EKLLRVFDLNRP-------KA-----PPKEISGHT-GGIRTVLWCHEDKCIL  159 (334)
T ss_pred             hheeeeEEecccchhhhccch-------HHHhhhhhccCC-------CC-----CchhhcCCC-CcceeEEEeccCceEE
Confidence            566788999999999987654       445677777651       11     566667776 7777777776666776


Q ss_pred             EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                      -.+   ....|.+||..+|+.   +..|. .+..+.+...|+||++|..+....         |..||.++=.  .|...
T Consensus       160 SSa---dd~tVRLWD~rTgt~---v~sL~-~~s~VtSlEvs~dG~ilTia~gss---------V~Fwdaksf~--~lKs~  221 (334)
T KOG0278|consen  160 SSA---DDKTVRLWDHRTGTE---VQSLE-FNSPVTSLEVSQDGRILTIAYGSS---------VKFWDAKSFG--LLKSY  221 (334)
T ss_pred             eec---cCCceEEEEeccCcE---EEEEe-cCCCCcceeeccCCCEEEEecCce---------eEEecccccc--ceeec
Confidence            554   334789999999986   44444 335678899999999877766554         8888876532  33322


Q ss_pred             CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEec
Q 039497          532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHP  609 (642)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~  609 (642)
                      ...-       .+.+.+++|+...++....+                 ..+|.+|.++++-....  .+-+.+..+.|||
T Consensus       222 k~P~-------nV~SASL~P~k~~fVaGged-----------------~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP  277 (334)
T KOG0278|consen  222 KMPC-------NVESASLHPKKEFFVAGGED-----------------FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP  277 (334)
T ss_pred             cCcc-------ccccccccCCCceEEecCcc-----------------eEEEEEeccCCceeeecccCCCCceEEEEECC
Confidence            2222       56788999998544433322                 27899999888755543  3446678999999


Q ss_pred             CCceEEeecCCC
Q 039497          610 GNQLDLGKLRLE  621 (642)
Q Consensus       610 dg~~~~~~~~~~  621 (642)
                      ||+.+++..+.|
T Consensus       278 dGE~yAsGSEDG  289 (334)
T KOG0278|consen  278 DGELYASGSEDG  289 (334)
T ss_pred             CCceeeccCCCc
Confidence            999999887766

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.66  E-value=5.3e-06  Score=85.37  Aligned_cols=230  Identities=10%  Similarity=0.097  Sum_probs=144.0

Q ss_pred             CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEE
Q 039497          331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       331 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      ..+.+..||+|+.|+-.   +..++|.++++..-+......  ...+..+.+|--  +++|+...      ..+.-++++
T Consensus       461 G~R~~~vSp~gqhLAsG---Dr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa------srdRlIHV~  531 (1080)
T KOG1408|consen  461 GFRALAVSPDGQHLASG---DRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA------SRDRLIHVY  531 (1080)
T ss_pred             ceEEEEECCCcceeccc---CccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc------cCCceEEEE
Confidence            33567899999998874   345788888887655332222  445666666542  33343332      125677888


Q ss_pred             EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCC--CeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG--KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--  482 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg--~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--  482 (642)
                      ++..+.+            ..+.|..+. ..+..+.|--.|  .+++-..  ..+...|+..-+.+.    ...++.+  
T Consensus       532 Dv~rny~------------l~qtld~HS-ssITsvKFa~~gln~~MiscG--ADksimFr~~qk~~~----g~~f~r~t~  592 (1080)
T KOG1408|consen  532 DVKRNYD------------LVQTLDGHS-SSITSVKFACNGLNRKMISCG--ADKSIMFRVNQKASS----GRLFPRHTQ  592 (1080)
T ss_pred             ecccccc------------hhhhhcccc-cceeEEEEeecCCceEEEecc--CchhhheehhccccC----ceecccccc
Confidence            8865212            344455544 556666666555  3332221  112233333332222    1222221  


Q ss_pred             ---CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC--CCCCCCcccccccceEEcCCCCEEE
Q 039497          483 ---PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG--PEGSGDVDRERINHVCFSADGEWLL  557 (642)
Q Consensus       483 ---~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~S~Dg~~l~  557 (642)
                         ..........|..++++....+.+        |.++++..++.++..+..  .++       ....+...|.|.+|+
T Consensus       593 t~~ktTlYDm~Vdp~~k~v~t~cQDrn--------irif~i~sgKq~k~FKgs~~~eG-------~lIKv~lDPSgiY~a  657 (1080)
T KOG1408|consen  593 TLSKTTLYDMAVDPTSKLVVTVCQDRN--------IRIFDIESGKQVKSFKGSRDHEG-------DLIKVILDPSGIYLA  657 (1080)
T ss_pred             ccccceEEEeeeCCCcceEEEEecccc--------eEEEeccccceeeeecccccCCC-------ceEEEEECCCccEEE
Confidence               233456678899999988887765        999999999888776532  223       345677899999988


Q ss_pred             EEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCC
Q 039497          558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~  620 (642)
                      ....+.                 .|-.+|.-+++ ..+++.+...+..+.|++|=++|++....
T Consensus       658 tScsdk-----------------tl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD  704 (1080)
T KOG1408|consen  658 TSCSDK-----------------TLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD  704 (1080)
T ss_pred             EeecCC-----------------ceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence            887664                 67788887776 67888888888899999999988875433

>PRK10115 protease 2; Provisional

Probab=98.66  E-value=1.1e-05  Score=88.98  Aligned_cols=218  Identities=13%  Similarity=0.175  Sum_probs=129.2

Q ss_pred             ccEEcCCCCEEEEEecCC--CceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFE--LNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~--~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ...|||||++|+|..+..  ...+|+++++.++.............+.|++|++.|+|+....   .......+|..+. 
T Consensus       131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~---~~~~~~~v~~h~l-  206 (686)
T PRK10115        131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHP---VTLLPYQVWRHTI-  206 (686)
T ss_pred             EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecC---CCCCCCEEEEEEC-
Confidence            457899999999977643  3467999999887632211122225699999999999998631   0012245666555 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCcc-CcEECCCCCeEEEEeCCCCceeEEEEECC--CCccccceeeCCCCCCcccc
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNA-FPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NGEFNGDIRQLTDGPWIDTM  488 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~~~~~~~l~~~~~~~~~  488 (642)
                       .     ++.+   ....+......... ....+.|++++++.+......++++++..  +++.    ..+........ 
T Consensus       207 -g-----t~~~---~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~-  272 (686)
T PRK10115        207 -G-----TPAS---QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP----FVFLPRRKDHE-  272 (686)
T ss_pred             -C-----CChh---HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc----eEEEECCCCCE-
Confidence             1     1110   12233322212222 23445599998877766556688888842  3442    32222222111 


Q ss_pred             eeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      ......+..|++.++.+.    ....|+.+++. .++.+.+.......       .+..+.++  +++|++...+.+.. 
T Consensus       273 ~~~~~~~~~ly~~tn~~~----~~~~l~~~~~~~~~~~~~l~~~~~~~-------~i~~~~~~--~~~l~~~~~~~g~~-  338 (686)
T PRK10115        273 YSLDHYQHRFYLRSNRHG----KNFGLYRTRVRDEQQWEELIPPRENI-------MLEGFTLF--TDWLVVEERQRGLT-  338 (686)
T ss_pred             EEEEeCCCEEEEEEcCCC----CCceEEEecCCCcccCeEEECCCCCC-------EEEEEEEE--CCEEEEEEEeCCEE-
Confidence            222234567777776543    45678888887 45556665532222       34455555  66888888877654 


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                                   .|+.+++.++.+..|+
T Consensus       339 -------------~l~~~~~~~~~~~~l~  354 (686)
T PRK10115        339 -------------SLRQINRKTREVIGIA  354 (686)
T ss_pred             -------------EEEEEcCCCCceEEec
Confidence                         8999998777777766

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.63  E-value=2.1e-05  Score=69.78  Aligned_cols=236  Identities=15%  Similarity=0.177  Sum_probs=135.7

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEE----CCCCC-----e-eEEee-----cCCceeeeeecCCCEEEEEEcCCCcc
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAK----SDGSK-----R-WTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQ  397 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d----~~~~~-----~-~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~  397 (642)
                      +...|.|.|...+..+. ...-.|..+.    +..+.     . ..+..     .+.+...+|||+|+.|+..++     
T Consensus        36 rav~fhp~g~lyavgsn-skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn-----  109 (350)
T KOG0641|consen   36 RAVAFHPAGGLYAVGSN-SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN-----  109 (350)
T ss_pred             eeEEecCCCceEEeccC-CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC-----
Confidence            45689999986555432 3333443332    21111     1 11111     567889999999998887764     


Q ss_pred             cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC---CCeEEEEeCCCCceeEEEEECCCCcccc
Q 039497          398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD---GKFLVFRSGRSGHKNLFVLDAVNGEFNG  474 (642)
Q Consensus       398 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD---g~~l~~~~~~~g~~~l~~~d~~~g~~~~  474 (642)
                        +..+++..++.  +      .+++.+....+.-+. +.+..++|..|   |..|+ ++...|+-.||+-|-.+|+.  
T Consensus       110 --dk~ik~l~fn~--d------t~~~~g~dle~nmhd-gtirdl~fld~~~s~~~il-~s~gagdc~iy~tdc~~g~~--  175 (350)
T KOG0641|consen  110 --DKTIKVLPFNA--D------TCNATGHDLEFNMHD-GTIRDLAFLDDPESGGAIL-ASAGAGDCKIYITDCGRGQG--  175 (350)
T ss_pred             --CceEEEEeccc--c------cccccCcceeeeecC-CceeeeEEecCCCcCceEE-EecCCCcceEEEeecCCCCc--
Confidence              55666655544  1      111111223333333 55666666543   22333 34445677999999998886  


Q ss_pred             ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCC
Q 039497          475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADG  553 (642)
Q Consensus       475 ~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg  553 (642)
                       ...+..+.+.+-. -++-+|-.++-.+.+.        .|..||+.-.......... ..+  ...-..+..++..|.|
T Consensus       176 -~~a~sghtghila-lyswn~~m~~sgsqdk--------tirfwdlrv~~~v~~l~~~~~~~--glessavaav~vdpsg  243 (350)
T KOG0641|consen  176 -FHALSGHTGHILA-LYSWNGAMFASGSQDK--------TIRFWDLRVNSCVNTLDNDFHDG--GLESSAVAAVAVDPSG  243 (350)
T ss_pred             -ceeecCCcccEEE-EEEecCcEEEccCCCc--------eEEEEeeeccceeeeccCcccCC--CcccceeEEEEECCCc
Confidence             6667666553322 2333465444444333        3788887644332222111 111  0000135678899999


Q ss_pred             CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEee
Q 039497          554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      +.|+....+.                 ...+||+.|+. +++...+...+..+.|||..-|++++
T Consensus       244 rll~sg~~ds-----------------sc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~  291 (350)
T KOG0641|consen  244 RLLASGHADS-----------------SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC  291 (350)
T ss_pred             ceeeeccCCC-----------------ceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence            9776554432                 56677888887 45566677788999999999888775

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.62  E-value=1.9e-05  Score=77.41  Aligned_cols=301  Identities=14%  Similarity=0.097  Sum_probs=168.3

Q ss_pred             ceeEeecCCCcceEeeCC--eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEe
Q 039497          185 KRVIVCERGGWPTWSGDS--TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATR  262 (642)
Q Consensus       185 ~~~l~~~~~~~~~wspdg--~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~  262 (642)
                      ..+++..+-...+|.|--  +++++. +..|+..+|-++....     +-......+.+...+..+.|+|...--++...
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~G-dK~G~VG~Wn~~~~~~-----d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVG-DKGGQVGLWNFGTQEK-----DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEc-cCCCcEEEEecCCCCC-----ccCceEEeccCCccccceEecCCChhheeeec
Confidence            344444344457999877  455555 7788777776642221     01134455677778888999987765555444


Q ss_pred             ccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCC
Q 039497          263 RKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGG  342 (642)
Q Consensus       263 ~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  342 (642)
                      ..|    .|++.|+....-    ....+-|...+.|                                  ....++.+..
T Consensus       255 yDG----tiR~~D~~~~i~----e~v~s~~~d~~~f----------------------------------s~~d~~~e~~  292 (498)
T KOG4328|consen  255 YDG----TIRLQDFEGNIS----EEVLSLDTDNIWF----------------------------------SSLDFSAESR  292 (498)
T ss_pred             cCc----eeeeeeecchhh----HHHhhcCccceee----------------------------------eeccccCCCc
Confidence            333    777777732210    0011111111111                                  1224555555


Q ss_pred             EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497          343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE  421 (642)
Q Consensus       343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  421 (642)
                      .++|...- +.-+++....++.+...+.. ...+.++.+.|-..+++.+.      ..+...+||++..  -     .+ 
T Consensus       293 ~vl~~~~~-G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~------s~D~T~kIWD~R~--l-----~~-  357 (498)
T KOG4328|consen  293 SVLFGDNV-GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA------SLDQTAKIWDLRQ--L-----RG-  357 (498)
T ss_pred             cEEEeecc-cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec------ccCcceeeeehhh--h-----cC-
Confidence            56665432 23345545555554333333 55789999999888877766      3478899999865  2     12 


Q ss_pred             ccccceE---EccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC---CCccccceeeCCCCC--Cc---cccee
Q 039497          422 EIPCDVK---ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV---NGEFNGDIRQLTDGP--WI---DTMPS  490 (642)
Q Consensus       422 ~~~~~~~---~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~---~g~~~~~~~~l~~~~--~~---~~~~~  490 (642)
                          +..   ....+. ..+....|||+|-.|+.+..++   .|-++|..   ..-.  ....|....  +.   .....
T Consensus       358 ----K~sp~lst~~Hr-rsV~sAyFSPs~gtl~TT~~D~---~IRv~dss~~sa~~~--p~~~I~Hn~~t~RwlT~fKA~  427 (498)
T KOG4328|consen  358 ----KASPFLSTLPHR-RSVNSAYFSPSGGTLLTTCQDN---EIRVFDSSCISAKDE--PLGTIPHNNRTGRWLTPFKAA  427 (498)
T ss_pred             ----CCCcceeccccc-ceeeeeEEcCCCCceEeeccCC---ceEEeecccccccCC--ccceeeccCcccccccchhhe
Confidence                221   112333 5677889999998877766433   67777762   1111  012222111  11   12348


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP  569 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~  569 (642)
                      |.||-.+|+.......        |=++|-.+++.. .+.......       ......|.|=+..++..++..+     
T Consensus       428 W~P~~~li~vg~~~r~--------IDv~~~~~~q~v~el~~P~~~t-------I~~vn~~HP~~~~~~aG~~s~G-----  487 (498)
T KOG4328|consen  428 WDPDYNLIVVGRYPRP--------IDVFDGNGGQMVCELHDPESST-------IPSVNEFHPMRDTLAAGGNSSG-----  487 (498)
T ss_pred             eCCCccEEEEeccCcc--------eeEEcCCCCEEeeeccCccccc-------cccceeecccccceeccCCccc-----
Confidence            9999888777765432        788888777632 223222111       2234578888876776666543     


Q ss_pred             CCCCCCCCCCCcEEEEEcCC
Q 039497          570 VSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       570 ~~~~~~~~~~~~l~~~~~~~  589 (642)
                                 .||++...+
T Consensus       488 -----------ki~vft~k~  496 (498)
T KOG4328|consen  488 -----------KIYVFTNKK  496 (498)
T ss_pred             -----------eEEEEecCC
Confidence                       788886544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.61  E-value=3.3e-05  Score=75.82  Aligned_cols=231  Identities=19%  Similarity=0.245  Sum_probs=138.5

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..|.|.++.+.|+++.  -....|+.++.++++.+.............-.++..|+.+..         .+.+++.+.  
T Consensus        28 EgP~w~~~~~~L~w~D--I~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~---------g~~~~~~~~--   94 (307)
T COG3386          28 EGPVWDPDRGALLWVD--ILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH---------GVRLLDPDT--   94 (307)
T ss_pred             cCccCcCCCCEEEEEe--CCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc---------ccEEEeccC--
Confidence            5779999999888876  346789999998777666655444444444444555555542         333344332  


Q ss_pred             CCCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeCC---------CCceeEEEEECCCCccccceeeC
Q 039497          413 DPSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSGR---------SGHKNLFVLDAVNGEFNGDIRQL  479 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~---------~g~~~l~~~d~~~g~~~~~~~~l  479 (642)
                            ++     ..+.+....    ..........|||+.. |....         .....||+++.. |..   .+.+
T Consensus        95 ------~~-----~~t~~~~~~~~~~~~r~ND~~v~pdG~~w-fgt~~~~~~~~~~~~~~G~lyr~~p~-g~~---~~l~  158 (307)
T COG3386          95 ------GG-----KITLLAEPEDGLPLNRPNDGVVDPDGRIW-FGDMGYFDLGKSEERPTGSLYRVDPD-GGV---VRLL  158 (307)
T ss_pred             ------Cc-----eeEEeccccCCCCcCCCCceeEcCCCCEE-EeCCCccccCccccCCcceEEEEcCC-CCE---EEee
Confidence                  22     112222211    1234457888998654 44333         123379999985 443   3556


Q ss_pred             CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC--C---ceE-EeeecCCCCCCCcccccccceEEcCCC
Q 039497          480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG--S---GLR-RIHVAGPEGSGDVDRERINHVCFSADG  553 (642)
Q Consensus       480 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~--~---~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg  553 (642)
                      ..+-...+.++|||||+.||++.....       .|++++++-  +   ..+ .+......+       .+..++...||
T Consensus       159 ~~~~~~~NGla~SpDg~tly~aDT~~~-------~i~r~~~d~~~g~~~~~~~~~~~~~~~G-------~PDG~~vDadG  224 (307)
T COG3386         159 DDDLTIPNGLAFSPDGKTLYVADTPAN-------RIHRYDLDPATGPIGGRRGFVDFDEEPG-------LPDGMAVDADG  224 (307)
T ss_pred             cCcEEecCceEECCCCCEEEEEeCCCC-------eEEEEecCcccCccCCcceEEEccCCCC-------CCCceEEeCCC
Confidence            654556678999999999998887543       488888762  1   111 111111222       44567777888


Q ss_pred             CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEe-cCC-ceEEeecCCCc
Q 039497          554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH-PGN-QLDLGKLRLED  622 (642)
Q Consensus       554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s-~dg-~~~~~~~~~~~  622 (642)
                      ...+ .+..++               ..|.+++.++..+.++.-.......++|- ++. .+|+++.+.++
T Consensus       225 ~lw~-~a~~~g---------------~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         225 NLWV-AAVWGG---------------GRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGM  279 (307)
T ss_pred             CEEE-ecccCC---------------ceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCC
Confidence            7443 333322               17889999976666666554556788885 444 66677777664

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.61  E-value=5.1e-06  Score=79.24  Aligned_cols=180  Identities=12%  Similarity=0.126  Sum_probs=115.7

Q ss_pred             CEEEEEecCCCceeEEEEECCCCCee-EEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          342 GLIVFNHDFELNAGIKIAKSDGSKRW-TLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       342 ~~l~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                      ..++++... ....+.+++.+.+... .+.....+.++.+.  -++|+++-        ...++||++..         -
T Consensus        57 SLvaiV~~~-qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~RLvV~L--------ee~IyIydI~~---------M  116 (391)
T KOG2110|consen   57 SLVAIVSIK-QPRKLKVVHFKKKTTICEIFFPTSILAVRMN--RKRLVVCL--------EESIYIYDIKD---------M  116 (391)
T ss_pred             ceeEEEecC-CCceEEEEEcccCceEEEEecCCceEEEEEc--cceEEEEE--------cccEEEEeccc---------c
Confidence            456666652 2356777777654432 23335666677764  45676665        34588888854         1


Q ss_pred             CccccceEEcc---ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCE
Q 039497          421 EEIPCDVKILT---KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL  497 (642)
Q Consensus       421 ~~~~~~~~~l~---~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~  497 (642)
                       +   ....|.   ... .....+++++.+.+++|-...+ ..+|+++|+.+-+.   +..|..+.+.+..++|+|||..
T Consensus       117 -k---lLhTI~t~~~n~-~gl~AlS~n~~n~ylAyp~s~t-~GdV~l~d~~nl~~---v~~I~aH~~~lAalafs~~G~l  187 (391)
T KOG2110|consen  117 -K---LLHTIETTPPNP-KGLCALSPNNANCYLAYPGSTT-SGDVVLFDTINLQP---VNTINAHKGPLAALAFSPDGTL  187 (391)
T ss_pred             -e---eehhhhccCCCc-cceEeeccCCCCceEEecCCCC-CceEEEEEccccee---eeEEEecCCceeEEEECCCCCE
Confidence             0   112221   122 2344455566667999987653 56899999887665   5667778888889999999999


Q ss_pred             EEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          498 IAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       498 l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      |+.++..++       -|.++.+..|+. .++...-...       .+.+++||+|+++|..+++.+.
T Consensus       188 lATASeKGT-------VIRVf~v~~G~kl~eFRRG~~~~-------~IySL~Fs~ds~~L~~sS~TeT  241 (391)
T KOG2110|consen  188 LATASEKGT-------VIRVFSVPEGQKLYEFRRGTYPV-------SIYSLSFSPDSQFLAASSNTET  241 (391)
T ss_pred             EEEeccCce-------EEEEEEcCCccEeeeeeCCceee-------EEEEEEECCCCCeEEEecCCCe
Confidence            999998774       366777765543 2332211111       5678999999999998887654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=2.5e-05  Score=69.39  Aligned_cols=232  Identities=13%  Similarity=0.133  Sum_probs=132.6

Q ss_pred             CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC-----CceeEEeeeC--CCccEEcC---CCCEEEEEec
Q 039497          280 PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP-----VKELRMLRLN--GSFPSFSP---DGGLIVFNHD  349 (642)
Q Consensus       280 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~sp---dg~~l~~~~~  349 (642)
                      +.+.++..+|||+|+.|+.-+.+..       + ...+.+..     ...+++.-..  .+.++|-.   .|..| ..+.
T Consensus        88 hkgsiyc~~ws~~geliatgsndk~-------i-k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~i-l~s~  158 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCGELIATGSNDKT-------I-KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAI-LASA  158 (350)
T ss_pred             cCccEEEEEecCccCeEEecCCCce-------E-EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceE-EEec
Confidence            4566777899999998887543222       1 11222111     1122222111  13344421   22223 3333


Q ss_pred             CCCceeEEEEECCCCCeeEEee--cCCcee-eeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497          350 FELNAGIKIAKSDGSKRWTLIK--DRTAFY-NSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD  426 (642)
Q Consensus       350 ~~~~~~l~~~d~~~~~~~~l~~--~~~~~~-~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  426 (642)
                      ..+.-.||+-|-..++..+...  .+.+.. ..|  +|-.++-.       ..+..+++|++..  +      -     .
T Consensus       159 gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sg-------sqdktirfwdlrv--~------~-----~  216 (350)
T KOG0641|consen  159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASG-------SQDKTIRFWDLRV--N------S-----C  216 (350)
T ss_pred             CCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEcc-------CCCceEEEEeeec--c------c-----e
Confidence            4677889998887776555443  222222 244  34433333       2478999999977  2      1     2


Q ss_pred             eEEccccC------CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEE
Q 039497          427 VKILTKEE------TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       427 ~~~l~~~~------~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~  500 (642)
                      ...+....      ...+..+++.|.|+.|+...   .+..-.++|+.+|..   ++....+...+..+.|||.-.+++.
T Consensus       217 v~~l~~~~~~~glessavaav~vdpsgrll~sg~---~dssc~lydirg~r~---iq~f~phsadir~vrfsp~a~yllt  290 (350)
T KOG0641|consen  217 VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH---ADSSCMLYDIRGGRM---IQRFHPHSADIRCVRFSPGAHYLLT  290 (350)
T ss_pred             eeeccCcccCCCcccceeEEEEECCCcceeeecc---CCCceEEEEeeCCce---eeeeCCCccceeEEEeCCCceEEEE
Confidence            33332111      02355678899998776443   334667889998886   6777788888889999999888887


Q ss_pred             EecCCCCCCCCceeEEEEeCCCCceEEeee---cCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHV---AGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      .+.+..        |.+.|+.+.-..++..   ..+..       .+....|.|..-.++-++.+.
T Consensus       291 ~syd~~--------ikltdlqgdla~el~~~vv~ehkd-------k~i~~rwh~~d~sfisssadk  341 (350)
T KOG0641|consen  291 CSYDMK--------IKLTDLQGDLAHELPIMVVAEHKD-------KAIQCRWHPQDFSFISSSADK  341 (350)
T ss_pred             ecccce--------EEEeecccchhhcCceEEEEeccC-------ceEEEEecCccceeeeccCcc
Confidence            776553        8999998764433321   11122       345678888765555444443

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=98.59  E-value=0.00052  Score=71.75  Aligned_cols=261  Identities=11%  Similarity=0.070  Sum_probs=157.0

Q ss_pred             ccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCC------CcccCCeecCCCCEEEEEEeecCCCCCCcccceEee
Q 039497          244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN------FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEP  317 (642)
Q Consensus       244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~------~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~  317 (642)
                      .....++|||+++|+++....|.....+.+.|+.++..      .-....+|.+|++.++|.+.+...   ....++...
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~---rp~kv~~h~  206 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENH---RPDKVWRHR  206 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCC---CcceEEEEe
Confidence            34456789999999999988899999999999954321      114467899999999999877663   234556666


Q ss_pred             ccCCCceeE-EeeeCC-C---ccEEcCCCCEEEEEecCCCceeEEEEECCCCCe--eEEeecCCceeeeeecCCCEEEEE
Q 039497          318 VASPVKELR-MLRLNG-S---FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR--WTLIKDRTAFYNSWSPTEKHVIYT  390 (642)
Q Consensus       318 ~~~~~~~~~-~~~~~~-~---~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~spdg~~l~~~  390 (642)
                      +..+...-. +..... .   ...-+.+.++|+.........++++++.+....  +.+.....-.......-+..+++.
T Consensus       207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~  286 (682)
T COG1770         207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYIL  286 (682)
T ss_pred             cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEE
Confidence            665322211 222222 1   122366677777766556778999998876554  333332211122222336677776


Q ss_pred             EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC
Q 039497          391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG  470 (642)
Q Consensus       391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g  470 (642)
                      ++.     +..+..|+....  .    ++..    ..+.+..+. ....--.++-=.++|+....+.+-..|++.+.++|
T Consensus       287 sN~-----~gknf~l~~ap~--~----~~~~----~w~~~I~h~-~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~  350 (682)
T COG1770         287 SNA-----DGKNFKLVRAPV--S----ADKS----NWRELIPHR-EDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTG  350 (682)
T ss_pred             ecC-----CCcceEEEEccC--C----CChh----cCeeeeccC-CCceeeeeeeeccEEEEEecccCCceEEEEecCCC
Confidence            653     234556665433  1    1111    334444443 33333345555678888888888999999999888


Q ss_pred             ccccceeeCCCC-CCcccceeEe--cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          471 EFNGDIRQLTDG-PWIDTMPSWS--PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       471 ~~~~~~~~l~~~-~~~~~~~~~s--pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                      +.    ..|.-. .........+  ++...|-|....-.    .+.+++-+|+.+++.+.+...
T Consensus       351 ~~----~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~t----tP~~~~~~dm~t~er~~Lkqq  406 (682)
T COG1770         351 EE----RGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMT----TPATLFDYDMATGERTLLKQQ  406 (682)
T ss_pred             ce----eeEEecchhhhccccCCCCCCCccEEEEeeccc----ccceeEEeeccCCcEEEEEec
Confidence            74    444321 1122222222  24455555554433    567899999999998877653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.56  E-value=3.5e-05  Score=73.83  Aligned_cols=297  Identities=13%  Similarity=0.124  Sum_probs=176.2

Q ss_pred             CCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC--cceEe-eCC--eEEEEEecCCC
Q 039497          139 GVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG--WPTWS-GDS--TIYFHRQADDG  213 (642)
Q Consensus       139 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~--~~~ws-pdg--~~~~~~~~~~g  213 (642)
                      +........+  +++|+...+++            .+.+|+..+....++....+.  .++|- ++.  ..++++ ..+.
T Consensus       105 dDWVSsv~~~--~~~IltgsYDg------------~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa-s~Dq  169 (423)
T KOG0313|consen  105 DDWVSSVKGA--SKWILTGSYDG------------TSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSA-SMDQ  169 (423)
T ss_pred             hhhhhhhccc--CceEEEeecCC------------eeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEe-cCCc
Confidence            3334444455  78999888776            677899988777777665543  34563 443  344444 6678


Q ss_pred             ceEEEEEecCCCcccccCCccc-eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCC
Q 039497          214 WWSIFRVSFPENLEFLGFPIAP-TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSAN  292 (642)
Q Consensus       214 ~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spD  292 (642)
                      +..||.++.....-      .. .+-.++...+..++..+||.+++..+.+     ..|.+|+...........  .+. 
T Consensus       170 tl~Lw~~~~~~~~~------~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D-----~~lkiWs~~~~~~~~~E~--~s~-  235 (423)
T KOG0313|consen  170 TLRLWKWNVGENKV------KALKVCRGHKRSVDSVSVDSSGTRFCSGSWD-----TMLKIWSVETDEEDELES--SSN-  235 (423)
T ss_pred             eEEEEEecCchhhh------hHHhHhcccccceeEEEecCCCCeEEeeccc-----ceeeecccCCCccccccc--cch-
Confidence            88999998765420      11 1112566677788888999988885444     488888842211110000  000 


Q ss_pred             CCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe--eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCee-EE
Q 039497          293 SEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML--RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-TL  369 (642)
Q Consensus       293 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-~l  369 (642)
                             +.++...    .   ........+...+.  ........|++.+  ++|..  .-...|.++|+..+... .+
T Consensus       236 -------~rrk~~~----~---~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~--SwDHTIk~WDletg~~~~~~  297 (423)
T KOG0313|consen  236 -------RRRKKQK----R---EKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSV--SWDHTIKVWDLETGGLKSTL  297 (423)
T ss_pred             -------hhhhhhh----h---hhcccccCceEEecccccceeeEEEcCCC--ceEee--cccceEEEEEeecccceeee
Confidence                   0000000    0   00000011111111  1112456787733  55543  22467889999877644 34


Q ss_pred             eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCe
Q 039497          370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF  449 (642)
Q Consensus       370 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~  449 (642)
                      +.+.....+..+|..+.|+..+.       +..+++|+-..  .     +++-   ....+..+. ..+..+.|+|-..+
T Consensus       298 ~~~ksl~~i~~~~~~~Ll~~gss-------dr~irl~DPR~--~-----~gs~---v~~s~~gH~-nwVssvkwsp~~~~  359 (423)
T KOG0313|consen  298 TTNKSLNCISYSPLSKLLASGSS-------DRHIRLWDPRT--G-----DGSV---VSQSLIGHK-NWVSSVKWSPTNEF  359 (423)
T ss_pred             ecCcceeEeecccccceeeecCC-------CCceeecCCCC--C-----CCce---eEEeeecch-hhhhheecCCCCce
Confidence            44777889999998887776653       67788888655  2     3322   445666676 78899999998887


Q ss_pred             EEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497          450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       450 l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      ++.....++  .+.+||+.+-+  .++..|..+...+-.+.|. +|..|+-.+.+.
T Consensus       360 ~~~S~S~D~--t~klWDvRS~k--~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~  410 (423)
T KOG0313|consen  360 QLVSGSYDN--TVKLWDVRSTK--APLYDIAGHNDKVLSVDWN-EGGLIVSGGADN  410 (423)
T ss_pred             EEEEEecCC--eEEEEEeccCC--CcceeeccCCceEEEEecc-CCceEEeccCcc
Confidence            766655444  67788887655  1267787776667777888 455666666554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.53  E-value=2.2e-05  Score=75.82  Aligned_cols=101  Identities=21%  Similarity=0.312  Sum_probs=68.8

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEE------CCC-----CCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcc
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAK------SDG-----SKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQ  397 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d------~~~-----~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~  397 (642)
                      ...|+|+|+.++-..+ ++..-||...      .++     .+...+..     ...+..+.|+||+..+++.+-     
T Consensus        70 ~vRf~p~gelLASg~D-~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~-----  143 (434)
T KOG1009|consen   70 VVRFSPDGELLASGGD-GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV-----  143 (434)
T ss_pred             EEEEcCCcCeeeecCC-CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec-----
Confidence            4589999998877554 3444455443      223     21111111     467889999999999998874     


Q ss_pred             cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC
Q 039497          398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR  456 (642)
Q Consensus       398 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~  456 (642)
                        ++...+|++..        +.     ....+..+. ..+..++|.|-+++|+..+..
T Consensus       144 --dns~~l~Dv~~--------G~-----l~~~~~dh~-~yvqgvawDpl~qyv~s~s~d  186 (434)
T KOG1009|consen  144 --DNSVRLWDVHA--------GQ-----LLAILDDHE-HYVQGVAWDPLNQYVASKSSD  186 (434)
T ss_pred             --cceEEEEEecc--------ce-----eEeeccccc-cccceeecchhhhhhhhhccC
Confidence              78889999976        33     444555555 788889999999998876643

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=98.51  E-value=2e-05  Score=77.18  Aligned_cols=200  Identities=13%  Similarity=0.155  Sum_probs=129.7

Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR  453 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~  453 (642)
                      ....+.|++...-.+...      ..+..+.+|++..  .+..  ++  .......+..+. ..+..++|+|-...++..
T Consensus       179 eg~glsWn~~~~g~Lls~------~~d~~i~lwdi~~--~~~~--~~--~~~p~~~~~~h~-~~VeDV~~h~~h~~lF~s  245 (422)
T KOG0264|consen  179 EGYGLSWNRQQEGTLLSG------SDDHTICLWDINA--ESKE--DK--VVDPKTIFSGHE-DVVEDVAWHPLHEDLFGS  245 (422)
T ss_pred             cccccccccccceeEeec------cCCCcEEEEeccc--cccC--Cc--cccceEEeecCC-cceehhhccccchhhhee
Confidence            356789999766555554      3588999999976  2110  00  011223334444 677889999977666544


Q ss_pred             eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEec-CCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497          454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN-RHNPDNVEAFSLYVIKPDGSGLRRIHVAG  532 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  532 (642)
                      -..+  ..|.+||+.+++. +.......+...+..++|.|-+.+|+.++. ++.        |.+||+..-+....+..+
T Consensus       246 v~dd--~~L~iwD~R~~~~-~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t--------V~LwDlRnL~~~lh~~e~  314 (422)
T KOG0264|consen  246 VGDD--GKLMIWDTRSNTS-KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT--------VALWDLRNLNKPLHTFEG  314 (422)
T ss_pred             ecCC--CeEEEEEcCCCCC-CCcccccccCCceeEEEeCCCCCceEEeccCCCc--------EEEeechhcccCceeccC
Confidence            4433  4899999985321 113445556778889999996666555544 443        999999877666666666


Q ss_pred             CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee------------eccC---
Q 039497          533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR------------RLTW---  597 (642)
Q Consensus       533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~lt~---  597 (642)
                      +..       .+..+.|||....++.++...+                .|.+||+..-...            .|-.   
T Consensus       315 H~d-------ev~~V~WSPh~etvLASSg~D~----------------rl~vWDls~ig~eq~~eda~dgppEllF~HgG  371 (422)
T KOG0264|consen  315 HED-------EVFQVEWSPHNETVLASSGTDR----------------RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG  371 (422)
T ss_pred             CCc-------ceEEEEeCCCCCceeEecccCC----------------cEEEEeccccccccChhhhccCCcceeEEecC
Confidence            666       6789999999999888876543                6777776532111            1122   


Q ss_pred             CCCCCCCcEEecCCceEEeecCC
Q 039497          598 NGYENGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       598 ~~~~~~~~~~s~dg~~~~~~~~~  620 (642)
                      +...+.+..|.|..-+.+.+...
T Consensus       372 H~~kV~DfsWnp~ePW~I~Svae  394 (422)
T KOG0264|consen  372 HTAKVSDFSWNPNEPWTIASVAE  394 (422)
T ss_pred             cccccccccCCCCCCeEEEEecC
Confidence            23456789999999887665443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=2.3e-05  Score=79.35  Aligned_cols=132  Identities=15%  Similarity=0.052  Sum_probs=91.2

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      ..+.|+..|++|+.+...++...+.+..+.....+ ...   .+.+..+.|.|..-+|++++        ...++||++.
T Consensus       525 ~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaT--------q~~vRiYdL~  595 (733)
T KOG0650|consen  525 RQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVAT--------QRSVRIYDLS  595 (733)
T ss_pred             ceeeeecCCceEEEeccCCCcceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEe--------ccceEEEehh
Confidence            46689999999999888778889999988765432 222   67788999999999888887        5688899884


Q ss_pred             eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce
Q 039497          410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP  489 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~  489 (642)
                      .          ++   ..+.|..+. ..+..++.+|.|..|+..+..   ..+..+|++-+..  +.+.+-.+...+..+
T Consensus       596 k----------qe---lvKkL~tg~-kwiS~msihp~GDnli~gs~d---~k~~WfDldlssk--Pyk~lr~H~~avr~V  656 (733)
T KOG0650|consen  596 K----------QE---LVKKLLTGS-KWISSMSIHPNGDNLILGSYD---KKMCWFDLDLSSK--PYKTLRLHEKAVRSV  656 (733)
T ss_pred             H----------HH---HHHHHhcCC-eeeeeeeecCCCCeEEEecCC---CeeEEEEcccCcc--hhHHhhhhhhhhhhh
Confidence            3          11   334444444 577889999999999888754   3566677764431  134444444444444


Q ss_pred             eEe
Q 039497          490 SWS  492 (642)
Q Consensus       490 ~~s  492 (642)
                      +|+
T Consensus       657 a~H  659 (733)
T KOG0650|consen  657 AFH  659 (733)
T ss_pred             hhc
Confidence            444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.46  E-value=3.3e-05  Score=75.88  Aligned_cols=228  Identities=10%  Similarity=-0.012  Sum_probs=138.7

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..+.|+||++|++..   ....|.+++.++.+.++...  .+.+..++|--.-..||..+.       +..+.+|.++. 
T Consensus       207 ~~avS~Dgkylatgg---~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~-------Drsvkvw~~~~-  275 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGG---RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA-------DRSVKVWSIDQ-  275 (479)
T ss_pred             EEEEcCCCcEEEecC---CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec-------CCceEEEehhH-
Confidence            457899999999943   23667789999988877754  567788888766667777664       67899999865 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPS  490 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~  490 (642)
                       .      .     -...+..+. ..+..+....-+ .++....++....||.+.-.+       +.+.. +.+....++
T Consensus       276 -~------s-----~vetlyGHq-d~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-------qlifrg~~~sidcv~  334 (479)
T KOG0299|consen  276 -L------S-----YVETLYGHQ-DGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-------QLIFRGGEGSIDCVA  334 (479)
T ss_pred             -h------H-----HHHHHhCCc-cceeeechhccc-ceEEeccccceeEEEeccccc-------eeeeeCCCCCeeeEE
Confidence             1      1     334444444 334444433333 455555566655666662221       33322 233555667


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc----ccccccceEEcCCCCEEEEEEecCCcc
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV----DRERINHVCFSADGEWLLFTANLGAVM  566 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~S~Dg~~l~~~~~~~~~~  566 (642)
                      |-.|- .++..++++.        |++|++..+++-.+....+......    ....+.+++..|....++..+..+-. 
T Consensus       335 ~In~~-HfvsGSdnG~--------IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~v-  404 (479)
T KOG0299|consen  335 FINDE-HFVSGSDNGS--------IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCV-  404 (479)
T ss_pred             Eeccc-ceeeccCCce--------EEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCce-
Confidence            76444 4666666654        9999998777654443322211110    01245677778888777766666533 


Q ss_pred             cCCCCCCCCCCCCCcEEEEEcCCCceeeccCC--CCCCCCcEEecCCceEEee
Q 039497          567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN--GYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~--~~~~~~~~~s~dg~~~~~~  617 (642)
                                    +||.+..+--+++.|..-  .+++.+++|+++|+++++.
T Consensus       405 --------------rLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  405 --------------RLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             --------------EEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence                          677665443345544432  4677899999999876554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.46  E-value=0.00085  Score=76.33  Aligned_cols=69  Identities=14%  Similarity=0.197  Sum_probs=50.7

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      ..++|.|.|+.||......++..|..+.-.|-+......     ...+..+.|++|+..|++...        ..+++|.
T Consensus       260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~--------~~vqLWt  331 (928)
T PF04762_consen  260 GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE--------DRVQLWT  331 (928)
T ss_pred             CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec--------CCceEEE
Confidence            356899999999887665666777777777765544333     345788999999999998762        3488887


Q ss_pred             EE
Q 039497          408 VS  409 (642)
Q Consensus       408 ~~  409 (642)
                      ..
T Consensus       332 ~~  333 (928)
T PF04762_consen  332 RS  333 (928)
T ss_pred             ee
Confidence            64

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=98.46  E-value=5.3e-05  Score=74.37  Aligned_cols=196  Identities=12%  Similarity=0.166  Sum_probs=124.6

Q ss_pred             CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-------eEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497          332 GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-------WTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT  402 (642)
Q Consensus       332 ~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-------~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  402 (642)
                      +..+.|++.-.-......  ....|.++|+.....       +....  ...+..++|.|--..|+-..      .++..
T Consensus       180 g~glsWn~~~~g~Lls~~--~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv------~dd~~  251 (422)
T KOG0264|consen  180 GYGLSWNRQQEGTLLSGS--DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV------GDDGK  251 (422)
T ss_pred             ccccccccccceeEeecc--CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee------cCCCe
Confidence            445688876654444332  234555555543322       11112  45678899999776665544      35889


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG  482 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~  482 (642)
                      +.||++..  +      ..    +...........+..++|+|-+.+|+.+...+  ..|.+||+..=.  ..+..+..+
T Consensus       252 L~iwD~R~--~------~~----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D--~tV~LwDlRnL~--~~lh~~e~H  315 (422)
T KOG0264|consen  252 LMIWDTRS--N------TS----KPSHSVKAHSAEVNCVAFNPFNEFILATGSAD--KTVALWDLRNLN--KPLHTFEGH  315 (422)
T ss_pred             EEEEEcCC--C------CC----CCcccccccCCceeEEEeCCCCCceEEeccCC--CcEEEeechhcc--cCceeccCC
Confidence            99999975  1      11    33333333226788899999888887776543  478889987433  125667777


Q ss_pred             CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE-------------eeecCCCCCCCcccccccceEE
Q 039497          483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR-------------IHVAGPEGSGDVDRERINHVCF  549 (642)
Q Consensus       483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-------------l~~~~~~~~~~~~~~~~~~~~~  549 (642)
                      ...+..+.|||.-..|+..+....       .|.+||+..-..++             .+..++..       .+.++.|
T Consensus       316 ~dev~~V~WSPh~etvLASSg~D~-------rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-------kV~DfsW  381 (422)
T KOG0264|consen  316 EDEVFQVEWSPHNETVLASSGTDR-------RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-------KVSDFSW  381 (422)
T ss_pred             CcceEEEEeCCCCCceeEecccCC-------cEEEEeccccccccChhhhccCCcceeEEecCccc-------ccccccC
Confidence            778889999999888777766543       38889886422221             22234433       5788999


Q ss_pred             cCCCCEEEEEEecCCc
Q 039497          550 SADGEWLLFTANLGAV  565 (642)
Q Consensus       550 S~Dg~~l~~~~~~~~~  565 (642)
                      .|..-+++.+..+.+.
T Consensus       382 np~ePW~I~SvaeDN~  397 (422)
T KOG0264|consen  382 NPNEPWTIASVAEDNI  397 (422)
T ss_pred             CCCCCeEEEEecCCce
Confidence            9999998877766543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.46  E-value=7.7e-05  Score=72.23  Aligned_cols=138  Identities=9%  Similarity=0.086  Sum_probs=89.6

Q ss_pred             eeeeEEEecCCCCCCCCC---c---eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCC
Q 039497           17 YGFDVFSIKSPFVNAPKF---H---EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCS   90 (642)
Q Consensus        17 ~~~~i~~~~~~~~~~~~~---~---~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~   90 (642)
                      +.--||.+...-   |++   .   ..-|+.|...+-.-+|+ |+|..|| +...+|..-||.....  ++         
T Consensus        36 ~~iriW~v~r~~---~~~~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLA-Sg~D~g~v~lWk~~~~--~~---------   99 (434)
T KOG1009|consen   36 KDIRIWKVNRSE---PGGGDMKVEYLSSLSRHTRAVNVVRFS-PDGELLA-SGGDGGEVFLWKQGDV--RI---------   99 (434)
T ss_pred             cceeeeeeeecC---CCCCceeEEEeecccCCcceeEEEEEc-CCcCeee-ecCCCceEEEEEecCc--CC---------
Confidence            455889987754   113   1   24788999999999999 9999998 4555677778876110  00         


Q ss_pred             ccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCC
Q 039497           91 LFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHE  170 (642)
Q Consensus        91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~  170 (642)
                             .+.      ....      ....+-|.+-      +.+-.+....+..+||||+.++++.+.+.         
T Consensus       100 -------~~~------d~e~------~~~ke~w~v~------k~lr~h~~diydL~Ws~d~~~l~s~s~dn---------  145 (434)
T KOG1009|consen  100 -------FDA------DTEA------DLNKEKWVVK------KVLRGHRDDIYDLAWSPDSNFLVSGSVDN---------  145 (434)
T ss_pred             -------ccc------cchh------hhCccceEEE------EEecccccchhhhhccCCCceeeeeeccc---------
Confidence                   000      0000      0001344432      22222444456699999999999998776         


Q ss_pred             CeeeEEEEEecCCCceeEeecCCCc---ceEeeCCeEEEE
Q 039497          171 LNTDIVVFQESDPNKRVIVCERGGW---PTWSGDSTIYFH  207 (642)
Q Consensus       171 ~~~~l~~~~~~~g~~~~l~~~~~~~---~~wspdg~~~~~  207 (642)
                         .+++|++..|....+...+...   .+|.|-++.+.+
T Consensus       146 ---s~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s  182 (434)
T KOG1009|consen  146 ---SVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS  182 (434)
T ss_pred             ---eEEEEEeccceeEeeccccccccceeecchhhhhhhh
Confidence               7899999999988888766643   488888765544

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=1.4e-05  Score=80.82  Aligned_cols=308  Identities=15%  Similarity=0.112  Sum_probs=169.5

Q ss_pred             CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec-------CCCCcccCCeecCCCCEEEEEEeecCCCCCCccc
Q 039497          240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL-------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTI  312 (642)
Q Consensus       240 ~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  312 (642)
                      ++...+..++..|.|.+|+.     |+....+++|.+.+       .....+...+|+|.+..-++...-+.      . 
T Consensus       398 GHtg~Vr~iSvdp~G~wlas-----GsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~------~-  465 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLAS-----GSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE------C-  465 (733)
T ss_pred             ccCCeEEEEEecCCcceeee-----cCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC------c-
Confidence            34445666778899999888     44555899999843       23456778899998886333322222      1 


Q ss_pred             ceEeeccCCCceeEEeeeCC---Ccc-EEcCCCCEEEEEecCCCceeEEEEE----CCCCCeeEEeecCCceeeeeecCC
Q 039497          313 PHLEPVASPVKELRMLRLNG---SFP-SFSPDGGLIVFNHDFELNAGIKIAK----SDGSKRWTLIKDRTAFYNSWSPTE  384 (642)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~---~~~-~~spdg~~l~~~~~~~~~~~l~~~d----~~~~~~~~l~~~~~~~~~~~spdg  384 (642)
                      +.+++..-. ..+.......   ..+ .-.|++.           ...|.-.    ...+....+.....+..+.|.-.|
T Consensus       466 ~~ivnp~~G-~~~e~~~t~ell~~~~~~~~p~~~-----------~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG  533 (733)
T KOG0650|consen  466 VLIVNPIFG-DRLEVGPTKELLASAPNESEPDAA-----------VVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG  533 (733)
T ss_pred             eEEeCcccc-chhhhcchhhhhhcCCCccCCccc-----------ceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence            111111100 0000000000   000 0112221           1122211    112222334447788999999999


Q ss_pred             CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEE
Q 039497          385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV  464 (642)
Q Consensus       385 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~  464 (642)
                      .+|+.+.-.    .....+.|..+.-        ..     ....+.... +.+....|.|---+|++++.+    .|.+
T Consensus       534 DYlatV~~~----~~~~~VliHQLSK--------~~-----sQ~PF~ksk-G~vq~v~FHPs~p~lfVaTq~----~vRi  591 (733)
T KOG0650|consen  534 DYLATVMPD----SGNKSVLIHQLSK--------RK-----SQSPFRKSK-GLVQRVKFHPSKPYLFVATQR----SVRI  591 (733)
T ss_pred             ceEEEeccC----CCcceEEEEeccc--------cc-----ccCchhhcC-CceeEEEecCCCceEEEEecc----ceEE
Confidence            999998742    2334455555543        12     223333344 677788999988888777653    6889


Q ss_pred             EECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC--ceEEeeec-CCCCCCCccc
Q 039497          465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS--GLRRIHVA-GPEGSGDVDR  541 (642)
Q Consensus       465 ~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~-~~~~~~~~~~  541 (642)
                      ||+..++.   ++.|..+...+..++.+|.|..|+..+.+..        ++.+|++-+  -.+.+... ....+-....
T Consensus       592 YdL~kqel---vKkL~tg~kwiS~msihp~GDnli~gs~d~k--------~~WfDldlsskPyk~lr~H~~avr~Va~H~  660 (733)
T KOG0650|consen  592 YDLSKQEL---VKKLLTGSKWISSMSIHPNGDNLILGSYDKK--------MCWFDLDLSSKPYKTLRLHEKAVRSVAFHK  660 (733)
T ss_pred             EehhHHHH---HHHHhcCCeeeeeeeecCCCCeEEEecCCCe--------eEEEEcccCcchhHHhhhhhhhhhhhhhcc
Confidence            99987776   5666666667788999999999998887764        777777533  22211100 0000000111


Q ss_pred             ccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC----CCCCCCcEEecCCceEEee
Q 039497          542 ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN----GYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       542 ~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~----~~~~~~~~~s~dg~~~~~~  617 (642)
                      ....-.+-|+||..++|...--+..            ..+-.++.     +++|..+    ...+.+..|+|.--|+++.
T Consensus       661 ryPLfas~sdDgtv~Vfhg~VY~Dl------------~qnpliVP-----lK~L~gH~~~~~~gVLd~~wHP~qpWLfsA  723 (733)
T KOG0650|consen  661 RYPLFASGSDDGTVIVFHGMVYNDL------------LQNPLIVP-----LKRLRGHEKTNDLGVLDTIWHPRQPWLFSA  723 (733)
T ss_pred             ccceeeeecCCCcEEEEeeeeehhh------------hcCCceEe-----eeeccCceeecccceEeecccCCCceEEec
Confidence            1223445588898888776432211            01112222     3344443    2335677899999998876


Q ss_pred             cCCC
Q 039497          618 LRLE  621 (642)
Q Consensus       618 ~~~~  621 (642)
                      ...|
T Consensus       724 GAd~  727 (733)
T KOG0650|consen  724 GADG  727 (733)
T ss_pred             CCCc
Confidence            5443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.44  E-value=1.3e-05  Score=71.89  Aligned_cols=185  Identities=10%  Similarity=0.028  Sum_probs=127.8

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      .+.+..+.|.-||++.+.+..       +..+++|..-.        +.     .++....+. ..+...+.+-|+..++
T Consensus        17 qgaV~avryN~dGnY~ltcGs-------drtvrLWNp~r--------g~-----liktYsghG-~EVlD~~~s~Dnskf~   75 (307)
T KOG0316|consen   17 QGAVRAVRYNVDGNYCLTCGS-------DRTVRLWNPLR--------GA-----LIKTYSGHG-HEVLDAALSSDNSKFA   75 (307)
T ss_pred             ccceEEEEEccCCCEEEEcCC-------CceEEeecccc--------cc-----eeeeecCCC-ceeeeccccccccccc
Confidence            466788899999999887753       78899998744        22     556655555 6677788888998876


Q ss_pred             EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                      -..   |+..+++||+.+|+.   .+.+-.+.+.++.+.|..+...++-.+.+..        +.+||-.+...+++...
T Consensus        76 s~G---gDk~v~vwDV~TGkv---~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s--------~r~wDCRS~s~ePiQil  141 (307)
T KOG0316|consen   76 SCG---GDKAVQVWDVNTGKV---DRRFRGHLAQVNTVRFNEESSVVASGSFDSS--------VRLWDCRSRSFEPIQIL  141 (307)
T ss_pred             cCC---CCceEEEEEcccCee---eeecccccceeeEEEecCcceEEEeccccce--------eEEEEcccCCCCccchh
Confidence            544   677999999999997   7888888888899999988876555554443        78888776655554432


Q ss_pred             CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCC
Q 039497          532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN  611 (642)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg  611 (642)
                      +...        -...+..-.+..|+..+.++                 .+-.||+..|.+.-=. .+-.+.+..||+||
T Consensus       142 dea~--------D~V~Si~v~~heIvaGS~DG-----------------tvRtydiR~G~l~sDy-~g~pit~vs~s~d~  195 (307)
T KOG0316|consen  142 DEAK--------DGVSSIDVAEHEIVAGSVDG-----------------TVRTYDIRKGTLSSDY-FGHPITSVSFSKDG  195 (307)
T ss_pred             hhhc--------CceeEEEecccEEEeeccCC-----------------cEEEEEeecceeehhh-cCCcceeEEecCCC
Confidence            2111        11233344566677777665                 5667777665443211 23346789999999


Q ss_pred             ceEEee
Q 039497          612 QLDLGK  617 (642)
Q Consensus       612 ~~~~~~  617 (642)
                      +..+.+
T Consensus       196 nc~La~  201 (307)
T KOG0316|consen  196 NCSLAS  201 (307)
T ss_pred             CEEEEe
Confidence            887554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.44  E-value=6.5e-05  Score=74.42  Aligned_cols=175  Identities=13%  Similarity=0.139  Sum_probs=109.8

Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCee-EEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-TLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      .+.-...+|+-++.   .+.|.+..+.++... .+..  ...+..+.|||-.+.++...      .+++.+.+|++..  
T Consensus       128 ~YN~~DeyiAsvs~---gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~a------sd~G~VtlwDv~g--  196 (673)
T KOG4378|consen  128 DYNNTDEYIASVSD---GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIA------SDKGAVTLWDVQG--  196 (673)
T ss_pred             EecCCcceeEEecc---CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEee------ccCCeEEEEeccC--
Confidence            34444456666554   256777777666533 2333  44566789999999888776      4588999999954  


Q ss_pred             CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497          413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS  492 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s  492 (642)
                             ...   .......+. .....+.|||-...|+..-.  -+..|++||....+.   ...|+-. .....++|+
T Consensus       197 -------~sp---~~~~~~~Hs-AP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s---~~~l~y~-~Plstvaf~  259 (673)
T KOG4378|consen  197 -------MSP---IFHASEAHS-APCRGICFSPSNEALLVSVG--YDKKINIYDIRSQAS---TDRLTYS-HPLSTVAFS  259 (673)
T ss_pred             -------CCc---ccchhhhcc-CCcCcceecCCccceEEEec--ccceEEEeecccccc---cceeeec-CCcceeeec
Confidence                   110   112222222 45567899998877766553  245899999875543   3444432 345678999


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCC
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG  553 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg  553 (642)
                      ++|.+|+....++.        |+.||+.+.+...-+...+..       .+..++|-+.-
T Consensus       260 ~~G~~L~aG~s~G~--------~i~YD~R~~k~Pv~v~sah~~-------sVt~vafq~s~  305 (673)
T KOG4378|consen  260 ECGTYLCAGNSKGE--------LIAYDMRSTKAPVAVRSAHDA-------SVTRVAFQPSP  305 (673)
T ss_pred             CCceEEEeecCCce--------EEEEecccCCCCceEeeeccc-------ceeEEEeeecc
Confidence            99998887777664        999999876543222222333       45667775543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.44  E-value=2.3e-05  Score=73.34  Aligned_cols=220  Identities=13%  Similarity=0.072  Sum_probs=125.6

Q ss_pred             cCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCCeecCCCC--EEEEEEeecCCCCCCcccceEeeccCC
Q 039497          252 HDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSE--FIGYHRFRGESTEGQSTIPHLEPVASP  321 (642)
Q Consensus       252 pdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~  321 (642)
                      -+|.+++.     |+...+|.+||+..        .+.+.+....+.++-.  +|+-...++.      ...|...--.-
T Consensus        51 Vs~~~~aS-----GssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~------i~iw~~~~W~~  119 (362)
T KOG0294|consen   51 VSGPYVAS-----GSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH------IIIWRVGSWEL  119 (362)
T ss_pred             ecceeEec-----cCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc------EEEEEcCCeEE
Confidence            36777776     55566999999933        2333444444444332  3333322222      11121110000


Q ss_pred             CceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCC
Q 039497          322 VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSER  400 (642)
Q Consensus       322 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~  400 (642)
                      ...+.........++.+|.|+ ||...  .+...|.++|+-.++...+.. ......+.|+|.|.++++..        .
T Consensus       120 ~~slK~H~~~Vt~lsiHPS~K-LALsV--g~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--------~  188 (362)
T KOG0294|consen  120 LKSLKAHKGQVTDLSIHPSGK-LALSV--GGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--------R  188 (362)
T ss_pred             eeeecccccccceeEecCCCc-eEEEE--cCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--------c
Confidence            011111111235678899998 55544  335678888887776555544 55566699999999988877        5


Q ss_pred             CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497          401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT  480 (642)
Q Consensus       401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~  480 (642)
                      ..+.+|.++.  .      .     ....+...  .....+.|- ++.+++...+.   ..|-.+|.+++..   +..+.
T Consensus       189 ~~i~i~q~d~--A------~-----v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~---~~i~~~D~ds~~~---~~~~~  246 (362)
T KOG0294|consen  189 NKIDIYQLDN--A------S-----VFREIENP--KRILCATFL-DGSELLVGGDN---EWISLKDTDSDTP---LTEFL  246 (362)
T ss_pred             cEEEEEeccc--H------h-----Hhhhhhcc--ccceeeeec-CCceEEEecCC---ceEEEeccCCCcc---ceeee
Confidence            6888888865  1      1     22222222  123334444 45555554432   3677888887665   56666


Q ss_pred             CCCCccccee--EecCCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497          481 DGPWIDTMPS--WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS  523 (642)
Q Consensus       481 ~~~~~~~~~~--~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~  523 (642)
                      .+...+..+.  -.|++.+|+..+.++.        |.+||++..
T Consensus       247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~--------I~vWd~~~~  283 (362)
T KOG0294|consen  247 AHENRVKDIASYTNPEHEYLVTASSDGF--------IKVWDIDME  283 (362)
T ss_pred             cchhheeeeEEEecCCceEEEEeccCce--------EEEEEcccc
Confidence            6666666654  3578888888887764        788887654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.44  E-value=0.00029  Score=67.79  Aligned_cols=253  Identities=14%  Similarity=0.106  Sum_probs=135.8

Q ss_pred             CceeCC-CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec-CC----CcceEeeCCeEEEEE-ec-CCCce
Q 039497          144 SPSVSY-SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-RG----GWPTWSGDSTIYFHR-QA-DDGWW  215 (642)
Q Consensus       144 ~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~----~~~~wspdg~~~~~~-~~-~~g~~  215 (642)
                      .++++| ++.-+||++.-           +.-++++|..+|+..+.... .+    +...||+||+++|+. ++ +.+.-
T Consensus         9 ~~a~~p~~~~avafaRRP-----------G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G   77 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRP-----------GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRG   77 (305)
T ss_pred             ceeeCCCCCeEEEEEeCC-----------CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcE
Confidence            467899 55666677543           34678999999987765553 33    356999999888876 22 23334


Q ss_pred             EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee---EEEEEeecCCCCcccCCeecCC
Q 039497          216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH---IEIYDLTLNPNFHHYNPFVSAN  292 (642)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~---i~~~d~~~~~~~~~~~~~~spD  292 (642)
                      .|-.+|...+..      +...+...+..-..+.+.|||+.|+++.  .|.....   =...++.+      -.|     
T Consensus        78 ~IgVyd~~~~~~------ri~E~~s~GIGPHel~l~pDG~tLvVAN--GGI~Thpd~GR~kLNl~t------M~p-----  138 (305)
T PF07433_consen   78 VIGVYDAARGYR------RIGEFPSHGIGPHELLLMPDGETLVVAN--GGIETHPDSGRAKLNLDT------MQP-----  138 (305)
T ss_pred             EEEEEECcCCcE------EEeEecCCCcChhhEEEcCCCCEEEEEc--CCCccCcccCceecChhh------cCC-----
Confidence            555556554321      4555666676677788999999999853  2110000   00001100      000     


Q ss_pred             CCEEEEE-EeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC-----CceeEEEEECCCCCe
Q 039497          293 SEFIGYH-RFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE-----LNAGIKIAKSDGSKR  366 (642)
Q Consensus       293 g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~~l~~~d~~~~~~  366 (642)
                        .|+|. ...++.       +....+..     ...+...+++++.+||. ++|.....     ...-|.+.+..+ ..
T Consensus       139 --sL~~ld~~sG~l-------l~q~~Lp~-----~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~-~~  202 (305)
T PF07433_consen  139 --SLVYLDARSGAL-------LEQVELPP-----DLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGG-AL  202 (305)
T ss_pred             --ceEEEecCCCce-------eeeeecCc-----cccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCC-cc
Confidence              12232 122220       01111111     11223345788999987 55533311     122234443322 22


Q ss_pred             eEEee--------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCc
Q 039497          367 WTLIK--------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN  438 (642)
Q Consensus       367 ~~l~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  438 (642)
                      +.+..        .+.+.+++++++|..++.++-      ..+.+.+|+...         +     .......-  ...
T Consensus       203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP------rGg~~~~~d~~t---------g-----~~~~~~~l--~D~  260 (305)
T PF07433_consen  203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP------RGGRVAVWDAAT---------G-----RLLGSVPL--PDA  260 (305)
T ss_pred             eeccCChHHHHhhCCceEEEEEeCCCCEEEEECC------CCCEEEEEECCC---------C-----CEeecccc--Cce
Confidence            22221        577889999999999999884      367888887654         2     22222221  234


Q ss_pred             cCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497          439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN  469 (642)
Q Consensus       439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~  469 (642)
                      ..++..+++  ++.++   |...++......
T Consensus       261 cGva~~~~~--f~~ss---G~G~~~~~~~~~  286 (305)
T PF07433_consen  261 CGVAPTDDG--FLVSS---GQGQLIRLSPDG  286 (305)
T ss_pred             eeeeecCCc--eEEeC---CCccEEEccCcc
Confidence            445555565  44444   444676666543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.44  E-value=3.1e-05  Score=76.05  Aligned_cols=227  Identities=11%  Similarity=0.061  Sum_probs=124.4

Q ss_pred             CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCc
Q 039497          138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGW  214 (642)
Q Consensus       138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~  214 (642)
                      +.......++||||+|||+...+.            .|.+|+..+.+..+.+..+.+   .++|-....-+|+. ..+..
T Consensus       201 h~keil~~avS~Dgkylatgg~d~------------~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~-s~Drs  267 (479)
T KOG0299|consen  201 HVKEILTLAVSSDGKYLATGGRDR------------HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA-SADRS  267 (479)
T ss_pred             ccceeEEEEEcCCCcEEEecCCCc------------eEEEecCcccchhhcccccccceeeeeeecCccceeee-ecCCc
Confidence            334456688999999999986555            677999999998888554332   34665444444444 34676


Q ss_pred             eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCC
Q 039497          215 WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSE  294 (642)
Q Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~  294 (642)
                      ..+|.++...         ..+.+-.+...+..+....-++ .+.+.    ....++.+|++              |+..
T Consensus       268 vkvw~~~~~s---------~vetlyGHqd~v~~IdaL~reR-~vtVG----grDrT~rlwKi--------------~ees  319 (479)
T KOG0299|consen  268 VKVWSIDQLS---------YVETLYGHQDGVLGIDALSRER-CVTVG----GRDRTVRLWKI--------------PEES  319 (479)
T ss_pred             eEEEehhHhH---------HHHHHhCCccceeeechhcccc-eEEec----cccceeEEEec--------------cccc
Confidence            7888776443         3444555543444444333333 33332    22347888887              4444


Q ss_pred             EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---
Q 039497          295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---  371 (642)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---  371 (642)
                      +|.|....+..                           ...+|=.+. .++..   ...+.|.++++...++..+..   
T Consensus       320 qlifrg~~~si---------------------------dcv~~In~~-HfvsG---SdnG~IaLWs~~KKkplf~~~~AH  368 (479)
T KOG0299|consen  320 QLIFRGGEGSI---------------------------DCVAFINDE-HFVSG---SDNGSIALWSLLKKKPLFTSRLAH  368 (479)
T ss_pred             eeeeeCCCCCe---------------------------eeEEEeccc-ceeec---cCCceEEEeeecccCceeEeeccc
Confidence            55554221110                           001111111 11111   223445555554444322221   


Q ss_pred             -----------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc-CCCCcc
Q 039497          372 -----------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE-ETGNNA  439 (642)
Q Consensus       372 -----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~  439 (642)
                                 +..+.+++..|....++..+       .++.++||.+..        +--    ....|..- -.+.+.
T Consensus       369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS-------~~G~vrLW~i~~--------g~r----~i~~l~~ls~~GfVN  429 (479)
T KOG0299|consen  369 GVIPELDPVNGNFWITSLAVIPGSDLLASGS-------WSGCVRLWKIED--------GLR----AINLLYSLSLVGFVN  429 (479)
T ss_pred             cccCCccccccccceeeeEecccCceEEecC-------CCCceEEEEecC--------Ccc----ccceeeecccccEEE
Confidence                       11455667777766665554       378999999976        110    22222211 126788


Q ss_pred             CcEECCCCCeEEEEeC
Q 039497          440 FPSCSPDGKFLVFRSG  455 (642)
Q Consensus       440 ~~~~SpDg~~l~~~~~  455 (642)
                      .+.|+++|++|+..-.
T Consensus       430 sl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  430 SLAFSNSGKRIVAGIG  445 (479)
T ss_pred             EEEEccCCCEEEEecc
Confidence            8999999998876653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.43  E-value=1.8e-05  Score=76.21  Aligned_cols=225  Identities=15%  Similarity=0.190  Sum_probs=142.1

Q ss_pred             CCEEEEEecCCCceeEEEEECC-CCCee-E--Ee--ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          341 GGLIVFNHDFELNAGIKIAKSD-GSKRW-T--LI--KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~-~~~~~-~--l~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      .++|+++....+.....++.+. .|+.- .  +.  +.+.+..+.|.|-...++...      .++..+.||.+..  ++
T Consensus        44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASg------SeD~~v~vW~IPe--~~  115 (472)
T KOG0303|consen   44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASG------SEDTKVMVWQIPE--NG  115 (472)
T ss_pred             CceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecC------CCCceEEEEECCC--cc
Confidence            4777776654444455554443 22211 1  11  145577889999776666554      3588999999976  32


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK  494 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd  494 (642)
                      -..+    +......|..+. ..+..+.|+|--.-+++++.  ++..|.+||+.+|+.   +..|. ++..+.+..|+-|
T Consensus       116 l~~~----ltepvv~L~gH~-rrVg~V~wHPtA~NVLlsag--~Dn~v~iWnv~tgea---li~l~-hpd~i~S~sfn~d  184 (472)
T KOG0303|consen  116 LTRD----LTEPVVELYGHQ-RRVGLVQWHPTAPNVLLSAG--SDNTVSIWNVGTGEA---LITLD-HPDMVYSMSFNRD  184 (472)
T ss_pred             cccC----cccceEEEeecc-eeEEEEeecccchhhHhhcc--CCceEEEEeccCCce---eeecC-CCCeEEEEEeccC
Confidence            1111    111456666776 78888999998777776664  456899999999996   66666 7778889999999


Q ss_pred             CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497          495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN  574 (642)
Q Consensus       495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~  574 (642)
                      |.+|+.+..+..        |.+||...++...-.. .+.+.      ....+.|-.+|+ |+.+.... -         
T Consensus       185 Gs~l~TtckDKk--------vRv~dpr~~~~v~e~~-~heG~------k~~Raifl~~g~-i~tTGfsr-~---------  238 (472)
T KOG0303|consen  185 GSLLCTTCKDKK--------VRVIDPRRGTVVSEGV-AHEGA------KPARAIFLASGK-IFTTGFSR-M---------  238 (472)
T ss_pred             Cceeeeecccce--------eEEEcCCCCcEeeecc-cccCC------CcceeEEeccCc-eeeecccc-c---------
Confidence            999988887765        9999998887654332 33331      345678889998 54443221 1         


Q ss_pred             CCCCCCcEEEEEcCC----CceeeccCCCCCCCCcEEecCCceE
Q 039497          575 QFQPYGDLYVVKLDG----SGLRRLTWNGYENGTPAWHPGNQLD  614 (642)
Q Consensus       575 ~~~~~~~l~~~~~~~----~~~~~lt~~~~~~~~~~~s~dg~~~  614 (642)
                         ...++-+|+.+.    .....|-.. ..+..|.|.+|...+
T Consensus       239 ---seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~iv  278 (472)
T KOG0303|consen  239 ---SERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIV  278 (472)
T ss_pred             ---cccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEE
Confidence               123555665432    112333333 334678888887443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.42  E-value=0.00029  Score=81.59  Aligned_cols=207  Identities=13%  Similarity=0.120  Sum_probs=120.8

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec------------------CCceeeeeecCCCEEEEEEcCC
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD------------------RTAFYNSWSPTEKHVIYTSTGP  394 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~------------------~~~~~~~~spdg~~l~~~~~~~  394 (642)
                      ..+++.++++.|++..  .....|.++|+.++....+...                  .....++++|++..|+++..  
T Consensus       627 ~GIavd~~gn~LYVaD--t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--  702 (1057)
T PLN02919        627 QGLAYNAKKNLLYVAD--TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--  702 (1057)
T ss_pred             cEEEEeCCCCEEEEEe--CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--
Confidence            3557888888665544  3346788889887766555321                  12346789997777877763  


Q ss_pred             CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc--------------cCCCCccCcEECCCCCeEEEEeCCCCce
Q 039497          395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--------------EETGNNAFPSCSPDGKFLVFRSGRSGHK  460 (642)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~~~~~~~~SpDg~~l~~~~~~~g~~  460 (642)
                          ....+++++...         +     ....+..              ........++++|||++|+++...  ..
T Consensus       703 ----~~~~I~v~d~~~---------g-----~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~  762 (1057)
T PLN02919        703 ----GQHQIWEYNISD---------G-----VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SS  762 (1057)
T ss_pred             ----CCCeEEEEECCC---------C-----eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--CC
Confidence                245555554422         1     1111110              000234458899999988877653  35


Q ss_pred             eEEEEECCCCccccceeeCCC--------------CC--------CcccceeEecCCCEEEEEecCCCCCCCCceeEEEE
Q 039497          461 NLFVLDAVNGEFNGDIRQLTD--------------GP--------WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI  518 (642)
Q Consensus       461 ~l~~~d~~~g~~~~~~~~l~~--------------~~--------~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~  518 (642)
                      .|.++|++++..    ..+..              ..        .....+++++||+ |+++...+       ..|.++
T Consensus       763 ~Irv~D~~tg~~----~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N-------~rIrvi  830 (1057)
T PLN02919        763 SIRALDLKTGGS----RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYN-------HKIKKL  830 (1057)
T ss_pred             eEEEEECCCCcE----EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCC-------CEEEEE
Confidence            899999887652    22110              00        0123568899997 55554433       349999


Q ss_pred             eCCCCceEEeeecCCCCC-----CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497          519 KPDGSGLRRIHVAGPEGS-----GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL  592 (642)
Q Consensus       519 d~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  592 (642)
                      |.+++....+...+..+.     .......+..+++++||+ |+++...+                ..|.++++.++..
T Consensus       831 D~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~N----------------n~Irvid~~~~~~  892 (1057)
T PLN02919        831 DPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNN----------------SLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCC----------------CEEEEEECCCCcc
Confidence            998887765543221110     001112456789999997 55554332                2788888877653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.39  E-value=3.4e-06  Score=85.58  Aligned_cols=189  Identities=13%  Similarity=0.109  Sum_probs=123.9

Q ss_pred             CccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeE------Eee-cCCceeeeeecCCC-EEEEEEcCCCcccCCCeE
Q 039497          333 SFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWT------LIK-DRTAFYNSWSPTEK-HVIYTSTGPIFQSERATV  403 (642)
Q Consensus       333 ~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~------l~~-~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~  403 (642)
                      ..+.|.| |..+|+...+ ++..+||.+...+.....      ++. ...+..+.|.|=-. .|+..+.       +..+
T Consensus       631 tDl~WdPFD~~rLAVa~d-dg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy-------d~Ti  702 (1012)
T KOG1445|consen  631 TDLHWDPFDDERLAVATD-DGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY-------DSTI  702 (1012)
T ss_pred             eecccCCCChHHeeeccc-CceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc-------ccee
Confidence            4567877 6778888765 667788888776654322      222 45677888888433 3344432       7899


Q ss_pred             EEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC
Q 039497          404 QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP  483 (642)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~  483 (642)
                      +||++..        ..     ....|..+. ..+..++|||||+.++....   +..|.+++..+++     +.+..+.
T Consensus       703 ~lWDl~~--------~~-----~~~~l~gHt-dqIf~~AWSpdGr~~AtVcK---Dg~~rVy~Prs~e-----~pv~Eg~  760 (1012)
T KOG1445|consen  703 ELWDLAN--------AK-----LYSRLVGHT-DQIFGIAWSPDGRRIATVCK---DGTLRVYEPRSRE-----QPVYEGK  760 (1012)
T ss_pred             eeeehhh--------hh-----hhheeccCc-CceeEEEECCCCcceeeeec---CceEEEeCCCCCC-----CccccCC
Confidence            9999976        23     456677776 78889999999999987763   3478999988776     4554443


Q ss_pred             Cc----ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497          484 WI----DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT  559 (642)
Q Consensus       484 ~~----~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~  559 (642)
                      +.    ...+.|.=||++|++...+..    ...+|-+||..+-....|........     .....+.+.+|...|+++
T Consensus       761 gpvgtRgARi~wacdgr~viv~Gfdk~----SeRQv~~Y~Aq~l~~~pl~t~~lDva-----ps~LvP~YD~Ds~~lflt  831 (1012)
T KOG1445|consen  761 GPVGTRGARILWACDGRIVIVVGFDKS----SERQVQMYDAQTLDLRPLYTQVLDVA-----PSPLVPHYDYDSNVLFLT  831 (1012)
T ss_pred             CCccCcceeEEEEecCcEEEEeccccc----chhhhhhhhhhhccCCcceeeeeccc-----CccccccccCCCceEEEe
Confidence            32    345789999999998887654    45678888765543333322211110     023456778888766554


Q ss_pred             E
Q 039497          560 A  560 (642)
Q Consensus       560 ~  560 (642)
                      .
T Consensus       832 G  832 (1012)
T KOG1445|consen  832 G  832 (1012)
T ss_pred             c
Confidence            4

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.38  E-value=0.00017  Score=75.70  Aligned_cols=193  Identities=15%  Similarity=0.117  Sum_probs=109.7

Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      -++|||+.+.-.  ..-...+..+|.++.+. .++...+....+.++|||+++++++..    . .....+..++.  . 
T Consensus       199 PlpnDGk~l~~~--~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyN----s-E~G~tl~em~a--~-  268 (635)
T PRK02888        199 PLPNDGKDLDDP--KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYN----S-EEGVTLAEMMA--A-  268 (635)
T ss_pred             ccCCCCCEeecc--cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccC----c-ccCcceeeecc--c-
Confidence            358899866332  23345667788886554 334346677888999999999888632    1 11223333332  1 


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC----CccccceeeCCCCCCccccee
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN----GEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~----g~~~~~~~~l~~~~~~~~~~~  490 (642)
                          ..     . ..+.-..   .....+.+||++..+.     ...+-++|..+    +..  ....|.. ....+.+.
T Consensus       269 ----e~-----d-~~vvfni---~~iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~--v~~yIPV-GKsPHGV~  327 (635)
T PRK02888        269 ----ER-----D-WVVVFNI---ARIEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSA--LTRYVPV-PKNPHGVN  327 (635)
T ss_pred             ----cC-----c-eEEEEch---HHHHHhhhCCCEEEEC-----CCEEEEEECCccccCCcc--eEEEEEC-CCCccceE
Confidence                00     1 1111111   1112567799977652     23688999887    321  1333433 34557889


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce---------EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL---------RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                      +||||++++.++...       ..+-++|++..+.         ..+...-..+      ..+.+.+|+++|.  +|++-
T Consensus       328 vSPDGkylyVanklS-------~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG------lGPLHTaFDg~G~--aytsl  392 (635)
T PRK02888        328 TSPDGKYFIANGKLS-------PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG------LGPLHTAFDGRGN--AYTTL  392 (635)
T ss_pred             ECCCCCEEEEeCCCC-------CcEEEEEChhhhhhhhccCCccceEEEeeccC------CCcceEEECCCCC--EEEeE
Confidence            999999999887644       3488889876432         1111111111      1345789999986  44443


Q ss_pred             cCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          562 LGAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                      --.               .+|..|+++.
T Consensus       393 f~d---------------sqv~kwn~~~  405 (635)
T PRK02888        393 FLD---------------SQIVKWNIEA  405 (635)
T ss_pred             eec---------------ceeEEEehHH
Confidence            221               2788888765

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.38  E-value=0.00015  Score=69.62  Aligned_cols=150  Identities=16%  Similarity=0.164  Sum_probs=99.7

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      ...+.++.|++ ...++-++       .+..++.|++.+        ++     ....++...  ....+..+|..+.|+
T Consensus       260 t~~Vs~V~w~d-~~v~yS~S-------wDHTIk~WDlet--------g~-----~~~~~~~~k--sl~~i~~~~~~~Ll~  316 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVS-------WDHTIKVWDLET--------GG-----LKSTLTTNK--SLNCISYSPLSKLLA  316 (423)
T ss_pred             ccceeeEEEcC-CCceEeec-------ccceEEEEEeec--------cc-----ceeeeecCc--ceeEeecccccceee
Confidence            45678899987 44444444       378999999998        45     555555543  566788999888777


Q ss_pred             EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                      ..+   ....|.+||+.++.-.....++..+...+..+.|+|...+++......+       .+.+||+.+.+...-...
T Consensus       317 ~gs---sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~-------t~klWDvRS~k~plydI~  386 (423)
T KOG0313|consen  317 SGS---SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN-------TVKLWDVRSTKAPLYDIA  386 (423)
T ss_pred             ecC---CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC-------eEEEEEeccCCCcceeec
Confidence            665   3458999999876521123456677777889999999888777665443       388999977653333333


Q ss_pred             CCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          532 GPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      +++.       .+.++.|. +|..|+....+
T Consensus       387 ~h~D-------Kvl~vdW~-~~~~IvSGGaD  409 (423)
T KOG0313|consen  387 GHND-------KVLSVDWN-EGGLIVSGGAD  409 (423)
T ss_pred             cCCc-------eEEEEecc-CCceEEeccCc
Confidence            4444       56677775 45555554444

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.38  E-value=1.3e-05  Score=79.86  Aligned_cols=169  Identities=17%  Similarity=0.234  Sum_probs=107.7

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..+|+|||.-|+...+ +  +.|-++...|--...+.. ...+..++|.|+.+.++|+.        .+.+.|-.+..  
T Consensus       109 ~gRW~~dGtgLlt~GE-D--G~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--------g~h~~IKpL~~--  175 (737)
T KOG1524|consen  109 SGRWSPDGAGLLTAGE-D--GVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--------GGHISIKPLAA--  175 (737)
T ss_pred             hcccCCCCceeeeecC-C--ceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec--------CCeEEEeeccc--
Confidence            4589999998877654 3  455555544433223333 56789999999999999997        45566655544  


Q ss_pred             CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497          413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS  492 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s  492 (642)
                      +      .     ++-+-..+. +.+..+.|++....|+...   .+-...+||.. |..   +-.-..+.+.+.+++|.
T Consensus       176 n------~-----k~i~WkAHD-GiiL~~~W~~~s~lI~sgG---ED~kfKvWD~~-G~~---Lf~S~~~ey~ITSva~n  236 (737)
T KOG1524|consen  176 N------S-----KIIRWRAHD-GLVLSLSWSTQSNIIASGG---EDFRFKIWDAQ-GAN---LFTSAAEEYAITSVAFN  236 (737)
T ss_pred             c------c-----ceeEEeccC-cEEEEeecCccccceeecC---CceeEEeeccc-Ccc---cccCChhccceeeeeec
Confidence            1      1     333444454 7788899999988776443   23466788877 543   34444456778899999


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      || +.++..+.+          +.+          +.... .+       .+..++||+||..++.....+
T Consensus       237 pd-~~~~v~S~n----------t~R----------~~~p~-~G-------SifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  237 PE-KDYLLWSYN----------TAR----------FSSPR-VG-------SIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             cc-cceeeeeee----------eee----------ecCCC-cc-------ceEEEEEcCCCceeeccccCc
Confidence            99 444444332          122          22111 22       467899999999887665443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.38  E-value=0.00035  Score=68.69  Aligned_cols=179  Identities=20%  Similarity=0.219  Sum_probs=103.5

Q ss_pred             eeEEEEECCCCCe-eEEee------cCCceeeeeecCCCEEEEEEcC---CCcccCCCeEEEEEEEeecCCCCCCCCCcc
Q 039497          354 AGIKIAKSDGSKR-WTLIK------DRTAFYNSWSPTEKHVIYTSTG---PIFQSERATVQIARVSFQLDPSDDNNREEI  423 (642)
Q Consensus       354 ~~l~~~d~~~~~~-~~l~~------~~~~~~~~~spdg~~l~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  423 (642)
                      ..+++++.+.+.. +.+..      ..........|||+ ++|....   .........-.||.++.  .     ++   
T Consensus        85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p--~-----g~---  153 (307)
T COG3386          85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDP--D-----GG---  153 (307)
T ss_pred             cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcC--C-----CC---
Confidence            4566666665555 33333      22355778899987 5555433   11222233447888875  2     22   


Q ss_pred             ccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC--Cccccc--eeeCCCCCCcccceeEecCCCEEE
Q 039497          424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN--GEFNGD--IRQLTDGPWIDTMPSWSPKGDLIA  499 (642)
Q Consensus       424 ~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~~--~~~l~~~~~~~~~~~~spdG~~l~  499 (642)
                        ..+.+...- .....++|||||+.++++....  ..|++++.+.  +.....  .......++..-..+...||++.+
T Consensus       154 --~~~l~~~~~-~~~NGla~SpDg~tly~aDT~~--~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~  228 (307)
T COG3386         154 --VVRLLDDDL-TIPNGLAFSPDGKTLYVADTPA--NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV  228 (307)
T ss_pred             --EEEeecCcE-EecCceEECCCCCEEEEEeCCC--CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE
Confidence              444444423 4566799999999998887543  4788887752  322000  112222334445567788887433


Q ss_pred             EEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE-cCCCCEEEEEEecCC
Q 039497          500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF-SADGEWLLFTANLGA  564 (642)
Q Consensus       500 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-S~Dg~~l~~~~~~~~  564 (642)
                       ....+      ...|.+++.++.....+.....         .+..+.| .++.+.|++++...+
T Consensus       229 -~a~~~------g~~v~~~~pdG~l~~~i~lP~~---------~~t~~~FgG~~~~~L~iTs~~~~  278 (307)
T COG3386         229 -AAVWG------GGRVVRFNPDGKLLGEIKLPVK---------RPTNPAFGGPDLNTLYITSARSG  278 (307)
T ss_pred             -ecccC------CceEEEECCCCcEEEEEECCCC---------CCccceEeCCCcCEEEEEecCCC
Confidence             33221      1249999999666665554211         3456666 678899999987654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=98.37  E-value=7.2e-05  Score=72.07  Aligned_cols=158  Identities=17%  Similarity=0.080  Sum_probs=91.1

Q ss_pred             eeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccccc-CCCEEEEEEeccCCCcccccccceE
Q 039497           45 INFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQIFKSWSALY  123 (642)
Q Consensus        45 ~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~  123 (642)
                      ....|++| |||+.+||....++...||....++.....+ ...   ....|+| .++.+.+.......        ...
T Consensus        25 ~~~s~AvS-~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~---~l~~PS~d~~g~~W~v~~~~~~--------~~~   91 (253)
T PF10647_consen   25 DVTSPAVS-PDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGG---SLTRPSWDPDGWVWTVDDGSGG--------VRV   91 (253)
T ss_pred             cccceEEC-CCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCC---ccccccccCCCCEEEEEcCCCc--------eEE
Confidence            56789999 9999999998666788899986655322111 111   2225777 33555554443321        122


Q ss_pred             EEEccCCce--EecccCCC--ccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEec---CCCceeEeec-----
Q 039497          124 STDLKASKF--TRLTPYGV--VDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES---DPNKRVIVCE-----  191 (642)
Q Consensus       124 ~~~~~~~~~--~~lt~~~~--~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~l~~~-----  191 (642)
                      ..+..+++.  ..+.-...  .....++||||++||+.....         +...|++--+.   +|....+...     
T Consensus        92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~---------~~~~v~va~V~r~~~g~~~~l~~~~~~~~  162 (253)
T PF10647_consen   92 VRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDG---------GGGRVYVAGVVRDGDGVPRRLTGPRRVAP  162 (253)
T ss_pred             EEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecC---------CCCeEEEEEEEeCCCCCcceeccceEecc
Confidence            222233333  33332211  345689999999999887554         34577776543   3323333321     


Q ss_pred             -CC---CcceEeeCCeEEEEEecCCCceEEEEEecCCC
Q 039497          192 -RG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPEN  225 (642)
Q Consensus       192 -~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~  225 (642)
                       ..   ..+.|.+++.+++.....++.... .+...++
T Consensus       163 ~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~  199 (253)
T PF10647_consen  163 PLLSDVTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGG  199 (253)
T ss_pred             cccCcceeeeecCCCEEEEEeCCCCCceeE-EEEccCC
Confidence             11   246999999988887444442222 4666666

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=1.2e-05  Score=72.96  Aligned_cols=219  Identities=14%  Similarity=0.109  Sum_probs=140.6

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      ..+||+.-.-++++..  +.+.|.++|+.- ...++..    ...+.++.|++-.++.+.++      .-+..++||+.+
T Consensus        65 dV~Wse~~e~~~~~a~--GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts------SWD~TiKLW~~~  135 (311)
T KOG0277|consen   65 DVAWSENHENQVIAAS--GDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRRIFLTS------SWDGTIKLWDPN  135 (311)
T ss_pred             EeeecCCCcceEEEEe--cCceEEEeccCC-CCcchhHHHhhhhheEEeccccccceeEEee------ccCCceEeecCC
Confidence            5689998777777664  345666667432 2234332    56788999999877777666      348899999986


Q ss_pred             eecCCCCCCCCCccccceEEccccCCCCccCcEECCCC-CeEEEEeCCCCceeEEEEECCC-CccccceeeCCCCCCccc
Q 039497          410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG-KFLVFRSGRSGHKNLFVLDAVN-GEFNGDIRQLTDGPWIDT  487 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~-g~~~~~~~~l~~~~~~~~  487 (642)
                      .        ..     ..+.+..+. ..+....|||-- .-++.++   ++..+-+||+.. |+.    ..|..+...+.
T Consensus       136 r--------~~-----Sv~Tf~gh~-~~Iy~a~~sp~~~nlfas~S---gd~~l~lwdvr~~gk~----~~i~ah~~Eil  194 (311)
T KOG0277|consen  136 R--------PN-----SVQTFNGHN-SCIYQAAFSPHIPNLFASAS---GDGTLRLWDVRSPGKF----MSIEAHNSEIL  194 (311)
T ss_pred             C--------Cc-----ceEeecCCc-cEEEEEecCCCCCCeEEEcc---CCceEEEEEecCCCce----eEEEeccceeE
Confidence            5        22     566666665 778889999954 4455444   444566666542 553    33555555667


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      ...|+.-...+++++..++       -|+.||+..-+.......++.-       -+..+.|||-...|+.+++..-.  
T Consensus       195 ~cdw~ky~~~vl~Tg~vd~-------~vr~wDir~~r~pl~eL~gh~~-------AVRkvk~Sph~~~lLaSasYDmT--  258 (311)
T KOG0277|consen  195 CCDWSKYNHNVLATGGVDN-------LVRGWDIRNLRTPLFELNGHGL-------AVRKVKFSPHHASLLASASYDMT--  258 (311)
T ss_pred             eecccccCCcEEEecCCCc-------eEEEEehhhccccceeecCCce-------EEEEEecCcchhhHhhhccccce--
Confidence            7899987777777766543       3899999754432221223222       45778999998888877766532  


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG  610 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d  610 (642)
                                  .+||......+.+.+...+..++..+.||+-
T Consensus       259 ------------~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~  289 (311)
T KOG0277|consen  259 ------------VRIWDPERQDSAIETVDHHTEFVCGLDWSLF  289 (311)
T ss_pred             ------------EEecccccchhhhhhhhccceEEeccccccc
Confidence                        2777554444445555556566667777764

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.35  E-value=0.00014  Score=67.37  Aligned_cols=144  Identities=15%  Similarity=0.238  Sum_probs=103.1

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCee--EEee------cCCceeeeeec--CCCEEEEEEcCCCcccCCCe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW--TLIK------DRTAFYNSWSP--TEKHVIYTSTGPIFQSERAT  402 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~--~l~~------~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~  402 (642)
                      ..+.|.|++.+++...    .++|.+++++.+...  .+..      .....+-+|||  ||+.++.+.        +..
T Consensus       127 ~cvew~Pns~klasm~----dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--------d~t  194 (370)
T KOG1007|consen  127 NCVEWEPNSDKLASMD----DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--------DST  194 (370)
T ss_pred             eeEEEcCCCCeeEEec----cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--------CCc
Confidence            3568999999998865    367888888766542  2222      22355678999  899998876        678


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG  482 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~  482 (642)
                      ++.|++.+  .      .     +...|.......+..+.|.|+-++++.+..+++  .|.+||...-+.  +++.+..+
T Consensus       195 l~~~D~RT--~------~-----~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg--yvriWD~R~tk~--pv~el~~H  257 (370)
T KOG1007|consen  195 LQFWDLRT--M------K-----KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDG--YVRIWDTRKTKF--PVQELPGH  257 (370)
T ss_pred             EEEEEccc--h------h-----hhcchhhhhcceeeeccCCCCceEEEEEcCCCc--cEEEEeccCCCc--cccccCCC
Confidence            99999876  2      2     334444444356788999999999988887666  677788764332  26777778


Q ss_pred             CCcccceeEecCCCEEEEEecCC
Q 039497          483 PWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       483 ~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      ...+..+.|.|.-..|+.++...
T Consensus       258 sHWvW~VRfn~~hdqLiLs~~SD  280 (370)
T KOG1007|consen  258 SHWVWAVRFNPEHDQLILSGGSD  280 (370)
T ss_pred             ceEEEEEEecCccceEEEecCCC
Confidence            77888899999877777776654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=98.35  E-value=5.4e-05  Score=71.99  Aligned_cols=271  Identities=15%  Similarity=0.104  Sum_probs=163.3

Q ss_pred             CCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee--------cCCCCcccCCeecCCCCEEEEEEeecCCCCCCc
Q 039497          239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT--------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQS  310 (642)
Q Consensus       239 ~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  310 (642)
                      ..+-..+..+++.|...+++.     ++....+.+||+.        +++.......++|+---+|+...+++..     
T Consensus       148 ~gHlgWVr~vavdP~n~wf~t-----gs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V-----  217 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFAT-----GSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV-----  217 (460)
T ss_pred             hhccceEEEEeeCCCceeEEe-----cCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee-----
Confidence            344557778888999998888     5556699999993        3344455667777766666555443331     


Q ss_pred             ccceEeecc-CC-CceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCE
Q 039497          311 TIPHLEPVA-SP-VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKH  386 (642)
Q Consensus       311 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~  386 (642)
                       .-|  ++. .+ .+.+--.-.....+...|.-+.|+..+ +  ...+.++|+.+........  ...+..+.+.|-.-+
T Consensus       218 -KCw--DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g-r--Dst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq  291 (460)
T KOG0285|consen  218 -KCW--DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG-R--DSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ  291 (460)
T ss_pred             -EEE--echhhhhHHHhccccceeEEEeccccceeEEecC-C--cceEEEeeecccceEEEecCCCCcceeEEeecCCCc
Confidence             111  111 11 000000000113456677666555433 2  3456666776665444443  556778888887777


Q ss_pred             EEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEE
Q 039497          387 VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD  466 (642)
Q Consensus       387 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d  466 (642)
                      ++..+.       +..+++|++..        ++     ....++.+. ..+..+...|+...++-++    ...|-.|+
T Consensus       292 vit~S~-------D~tvrlWDl~a--------gk-----t~~tlt~hk-ksvral~lhP~e~~fASas----~dnik~w~  346 (460)
T KOG0285|consen  292 VITGSH-------DSTVRLWDLRA--------GK-----TMITLTHHK-KSVRALCLHPKENLFASAS----PDNIKQWK  346 (460)
T ss_pred             eEEecC-------CceEEEeeecc--------Cc-----eeEeeeccc-ceeeEEecCCchhhhhccC----Cccceecc
Confidence            887764       78999999976        44     667777776 7788888999765444332    23677888


Q ss_pred             CCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCccc-ccc
Q 039497          467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDR-ERI  544 (642)
Q Consensus       467 ~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~-~~~  544 (642)
                      +-.|+.   +..+..+...+..++...||  +++.+.++.       .|+.||-+++.- +.+...-..++  .+. ..+
T Consensus       347 ~p~g~f---~~nlsgh~~iintl~~nsD~--v~~~G~dng-------~~~fwdwksg~nyQ~~~t~vqpGS--l~sEagI  412 (460)
T KOG0285|consen  347 LPEGEF---LQNLSGHNAIINTLSVNSDG--VLVSGGDNG-------SIMFWDWKSGHNYQRGQTIVQPGS--LESEAGI  412 (460)
T ss_pred             CCccch---hhccccccceeeeeeeccCc--eEEEcCCce-------EEEEEecCcCcccccccccccCCc--cccccce
Confidence            888887   66677776777777777776  444444332       389999877643 22211000110  000 034


Q ss_pred             cceEEcCCCCEEEEEEecCC
Q 039497          545 NHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       545 ~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      ....|...|.+|+....+..
T Consensus       413 ~as~fDktg~rlit~eadKt  432 (460)
T KOG0285|consen  413 FASCFDKTGSRLITGEADKT  432 (460)
T ss_pred             eEEeecccCceEEeccCCcc
Confidence            56678888988887766553

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.32  E-value=0.0021  Score=62.73  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=78.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCEEEEEEcC-CCccc
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKHVIYTSTG-PIFQS  398 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~l~~~~~~-~~~~~  398 (642)
                      .+.++.++.+++|.+.   .+.|+.+++.+........              .++-.-+++++..++|++.... ....-
T Consensus       188 ~~~~~~~~~~~~F~Sy---~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH  264 (342)
T PF06433_consen  188 HPAYSRDGGRLYFVSY---EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH  264 (342)
T ss_dssp             --EEETTTTEEEEEBT---TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred             ccceECCCCeEEEEec---CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence            4566777788888876   4789999998887544332              2234456778777777766542 22223


Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497          399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ  478 (642)
Q Consensus       399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~  478 (642)
                      .+...+||.++.  +     .++    .+.++....  ...++.+|.|.+-++|+... +...|+++|..+|+.   +..
T Consensus       265 KdpgteVWv~D~--~-----t~k----rv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~---~~~  327 (342)
T PF06433_consen  265 KDPGTEVWVYDL--K-----THK----RVARIPLEH--PIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKL---VRS  327 (342)
T ss_dssp             TS-EEEEEEEET--T-----TTE----EEEEEEEEE--EESEEEEESSSS-EEEEEET-TTTEEEEEETTT--E---EEE
T ss_pred             cCCceEEEEEEC--C-----CCe----EEEEEeCCC--ccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcE---Eee
Confidence            467788999988  3     221    444444332  45578999999978776533 345899999999986   454


Q ss_pred             CC
Q 039497          479 LT  480 (642)
Q Consensus       479 l~  480 (642)
                      +.
T Consensus       328 ~~  329 (342)
T PF06433_consen  328 IE  329 (342)
T ss_dssp             E-
T ss_pred             hh
Confidence            44

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=5.3e-06  Score=90.16  Aligned_cols=288  Identities=15%  Similarity=0.147  Sum_probs=159.9

Q ss_pred             ceeCCCCc-EEEEEecCCCCCCCCC-CCCeeeEEEEEecCCCc--eeEeec---CC-CcceEeeCCeE---EEEEecCCC
Q 039497          145 PSVSYSGK-FIAVASYESRPWPGEF-HELNTDIVVFQESDPNK--RVIVCE---RG-GWPTWSGDSTI---YFHRQADDG  213 (642)
Q Consensus       145 ~~~SPDG~-~la~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~--~~l~~~---~~-~~~~wspdg~~---~~~~~~~~g  213 (642)
                      .+|||+++ ++|...... ...... .....+||..+..+++.  +.+...   .. .-++|.+-|..   ++....++|
T Consensus        12 ~awSp~~~~~laagt~aq-~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG   90 (1049)
T KOG0307|consen   12 FAWSPASPPLLAAGTAAQ-QFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG   90 (1049)
T ss_pred             EEecCCCchhhHHHhhhh-ccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence            57899886 344222111 111111 12455777777766653  222221   11 34699887733   344446789


Q ss_pred             ceEEEEEec--CCCcccccCCccceeeCCCCCccccceeecCCc-EEEEEEeccCCceeeEEEEEeecCCCCcccCCeec
Q 039497          214 WWSIFRVSF--PENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK-RLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS  290 (642)
Q Consensus       214 ~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~-~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s  290 (642)
                      ...+|..+.  .+...     +...+...+...+..+.|.+... .|+.     |....+|++||+......      ++
T Consensus        91 ~I~ly~p~~~~~~~~~-----~~la~~~~h~G~V~gLDfN~~q~nlLAS-----Ga~~geI~iWDlnn~~tP------~~  154 (1049)
T KOG0307|consen   91 NIVLYDPASIIANASE-----EVLATKSKHTGPVLGLDFNPFQGNLLAS-----GADDGEILIWDLNKPETP------FT  154 (1049)
T ss_pred             ceEEecchhhccCcch-----HHHhhhcccCCceeeeeccccCCceeec-----cCCCCcEEEeccCCcCCC------CC
Confidence            777776654  23310     01122234455677788888776 5555     344559999999321100      00


Q ss_pred             CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEE
Q 039497          291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTL  369 (642)
Q Consensus       291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l  369 (642)
                      +.+                         -.....       ...++|+..-.+|+-....  .+...++|+...+. ..+
T Consensus       155 ~~~-------------------------~~~~~e-------I~~lsWNrkvqhILAS~s~--sg~~~iWDlr~~~pii~l  200 (1049)
T KOG0307|consen  155 PGS-------------------------QAPPSE-------IKCLSWNRKVSHILASGSP--SGRAVIWDLRKKKPIIKL  200 (1049)
T ss_pred             CCC-------------------------CCCccc-------ceEeccchhhhHHhhccCC--CCCceeccccCCCccccc
Confidence            000                         000011       1123454443333332222  23444556655532 222


Q ss_pred             ee---cCCceeeeeecCCC-EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC
Q 039497          370 IK---DRTAFYNSWSPTEK-HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP  445 (642)
Q Consensus       370 ~~---~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp  445 (642)
                      ..   ......+.|.||.. +|+..+..    .....+.+|++..  .     ..     ..+.+..+. ..+..+.|.+
T Consensus       201 s~~~~~~~~S~l~WhP~~aTql~~As~d----d~~PviqlWDlR~--a-----ss-----P~k~~~~H~-~GilslsWc~  263 (1049)
T KOG0307|consen  201 SDTPGRMHCSVLAWHPDHATQLLVASGD----DSAPVIQLWDLRF--A-----SS-----PLKILEGHQ-RGILSLSWCP  263 (1049)
T ss_pred             ccCCCccceeeeeeCCCCceeeeeecCC----CCCceeEeecccc--c-----CC-----chhhhcccc-cceeeeccCC
Confidence            22   23467899999875 45555532    3356788999876  2     11     556666666 6777899999


Q ss_pred             CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC-EEEEEecCC
Q 039497          446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD-LIAFSSNRH  505 (642)
Q Consensus       446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~  505 (642)
                      .+..++.++.+++  +|+.|+.++|+.   +-.+.........+.|.|..- .++..+-++
T Consensus       264 ~D~~lllSsgkD~--~ii~wN~~tgEv---l~~~p~~~nW~fdv~w~pr~P~~~A~asfdg  319 (1049)
T KOG0307|consen  264 QDPRLLLSSGKDN--RIICWNPNTGEV---LGELPAQGNWCFDVQWCPRNPSVMAAASFDG  319 (1049)
T ss_pred             CCchhhhcccCCC--CeeEecCCCceE---eeecCCCCcceeeeeecCCCcchhhhheecc
Confidence            8878888887654  899999999987   677776555567789998665 555555554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.31  E-value=0.00038  Score=64.65  Aligned_cols=160  Identities=11%  Similarity=0.136  Sum_probs=102.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCC--EEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEK--HVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ...|-|=.+-++..+  .-...|-++|..+-+...... .+.+..-+|||-..  -|+.+.      ..+..++++++..
T Consensus       106 s~~WyP~DtGmFtss--SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~g------tr~~~VrLCDi~S  177 (397)
T KOG4283|consen  106 SAIWYPIDTGMFTSS--SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAG------TRDVQVRLCDIAS  177 (397)
T ss_pred             eeEEeeecCceeecc--cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEe------cCCCcEEEEeccC
Confidence            345655433333322  224567778887766544433 67788888888543  344343      3478999999976


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--CCcc----------ccceee
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NGEF----------NGDIRQ  478 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~----------~~~~~~  478 (642)
                              |.     -...|..+. ..+..+.|||...|++++..-+|  .+.+||+.  +|-.          +-.++.
T Consensus       178 --------Gs-----~sH~LsGHr-~~vlaV~Wsp~~e~vLatgsaDg--~irlWDiRrasgcf~~lD~hn~k~~p~~~~  241 (397)
T KOG4283|consen  178 --------GS-----FSHTLSGHR-DGVLAVEWSPSSEWVLATGSADG--AIRLWDIRRASGCFRVLDQHNTKRPPILKT  241 (397)
T ss_pred             --------Cc-----ceeeecccc-CceEEEEeccCceeEEEecCCCc--eEEEEEeecccceeEEeecccCccCccccc
Confidence                    33     556667776 77888999999999999887666  44444543  2221          000111


Q ss_pred             CCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497          479 LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL  525 (642)
Q Consensus       479 l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  525 (642)
                      -+.+.+.+...+|+.||++++....+..        +.+|+...|+-
T Consensus       242 n~ah~gkvngla~tSd~~~l~~~gtd~r--------~r~wn~~~G~n  280 (397)
T KOG4283|consen  242 NTAHYGKVNGLAWTSDARYLASCGTDDR--------IRVWNMESGRN  280 (397)
T ss_pred             cccccceeeeeeecccchhhhhccCccc--------eEEeecccCcc
Confidence            1233455677899999999988776654        78888876654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.28  E-value=1.8e-05  Score=75.35  Aligned_cols=170  Identities=14%  Similarity=0.142  Sum_probs=110.0

Q ss_pred             eeEEEEECCCCCee-EEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          354 AGIKIAKSDGSKRW-TLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       354 ~~l~~~d~~~~~~~-~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      .+|-++|..-..+. .+.. ...+..+.|+|....|+.+..      .+..+.||++..        +.     ..+.+.
T Consensus       167 e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~------sDrsIvLyD~R~--------~~-----Pl~KVi  227 (433)
T KOG0268|consen  167 EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA------SDRSIVLYDLRQ--------AS-----PLKKVI  227 (433)
T ss_pred             ceeeecccccCCccceeecCCCceeEEecCCCcchheeeec------cCCceEEEeccc--------CC-----ccceee
Confidence            45556665433332 2322 556789999999888877763      478888999876        22     334443


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC-CCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL-TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      ..  ..-..+.|+|. -+.+.+.+  .+..||.+|...-+.   +..+ ..+...+..+.|||-|+-++..+-+..    
T Consensus       228 ~~--mRTN~IswnPe-afnF~~a~--ED~nlY~~DmR~l~~---p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks----  295 (433)
T KOG0268|consen  228 LT--MRTNTICWNPE-AFNFVAAN--EDHNLYTYDMRNLSR---PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS----  295 (433)
T ss_pred             ee--ccccceecCcc-ccceeecc--ccccceehhhhhhcc---cchhhcccceeEEEeccCCCcchhccccccce----
Confidence            32  24456899993 33333333  445899999864332   1222 223335677899999999998887764    


Q ss_pred             CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                          |.++....+..+.+-...--.       .+..+.||.|.++|+-.+++++.
T Consensus       296 ----IRIf~~~~~~SRdiYhtkRMq-------~V~~Vk~S~Dskyi~SGSdd~nv  339 (433)
T KOG0268|consen  296 ----IRIFPVNHGHSRDIYHTKRMQ-------HVFCVKYSMDSKYIISGSDDGNV  339 (433)
T ss_pred             ----EEEeecCCCcchhhhhHhhhh-------eeeEEEEeccccEEEecCCCcce
Confidence                788888777766554322111       46789999999999888887644

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=98.28  E-value=5.2e-05  Score=82.17  Aligned_cols=134  Identities=13%  Similarity=0.146  Sum_probs=87.3

Q ss_pred             cceEEEEeecCCceeeeEEEecCCCCCCCCCceeee-cCCceeeeeceecCCCCCeEEE-EEccC--CCcceEEEc--CC
Q 039497            4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRL-TDGTSINFNAQFVDGQDQTIAF-ISERS--GSPRIYQTR--PG   77 (642)
Q Consensus         4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rl-t~~~~~~~~~~~S~pDG~~laf-~~~~~--g~~~l~~~~--~~   77 (642)
                      ..+|||+.+    ..+.|.+++..|     ..++++ +.+....++|.|| |||++||| ++-..  |...||+.+  ..
T Consensus       318 ~tkiAfv~~----~~~~L~~~D~dG-----~n~~~ve~~~~~~i~sP~~S-PDG~~vAY~ts~e~~~g~s~vYv~~L~t~  387 (912)
T TIGR02171       318 KAKLAFRND----VTGNLAYIDYTK-----GASRAVEIEDTISVYHPDIS-PDGKKVAFCTGIEGLPGKSSVYVRNLNAS  387 (912)
T ss_pred             eeeEEEEEc----CCCeEEEEecCC-----CCceEEEecCCCceecCcCC-CCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence            368999965    234999999999     899999 8999999999999 99999999 66655  688899983  33


Q ss_pred             CCcccccCCCCCCcccccccc-CC-CEEEEEEeccCCC--cccccccceEEEEccCC---ceEecccCCCccCCceeCCC
Q 039497           78 SSKTELLPSIPCSLFHDRPVA-RN-NKLFFISAHEQPD--QIFKSWSALYSTDLKAS---KFTRLTPYGVVDYSPSVSYS  150 (642)
Q Consensus        78 g~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~~~~~--~~~~~~~~l~~~~~~~~---~~~~lt~~~~~~~~~~~SPD  150 (642)
                      |..+..|.. +.+...+.... .| ..|+|++......  ..+... .-|.++-..|   +++.|..+..+   --+|-|
T Consensus       388 ~~~~vkl~v-e~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~-stw~v~f~~gkfg~p~kl~dga~h---ggvs~~  462 (912)
T TIGR02171       388 GSGLVKLPV-ENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAY-STWQVPFANGKFGTPKKLFDGAYH---GGVSED  462 (912)
T ss_pred             CCCceEeec-ccccccceEecCCCCeEEEEEcCCCCCcchhhhhhc-ceEEEEecCCCCCCchhhhccccc---cccccC
Confidence            433333433 23333333333 33 3577877644221  122222 5788887664   57777755332   234655


Q ss_pred             Cc
Q 039497          151 GK  152 (642)
Q Consensus       151 G~  152 (642)
                      .+
T Consensus       463 ~~  464 (912)
T TIGR02171       463 LN  464 (912)
T ss_pred             Cc
Confidence            54

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.28  E-value=5.2e-05  Score=77.67  Aligned_cols=216  Identities=14%  Similarity=0.121  Sum_probs=124.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      ..+||.||++++..+.   ...+.+++.+-...-...+...+..+.|.|-...|+.++.        +..-+|..+.  +
T Consensus        58 cVAys~dGkrFASG~a---DK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsL--------sdFglWS~~q--K  124 (1081)
T KOG1538|consen   58 CVAYAKDGKRFASGSA---DKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSL--------SDFGLWSPEQ--K  124 (1081)
T ss_pred             EEEEccCCceeccCCC---ceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcch--------hhccccChhh--h
Confidence            4589999998766332   2334444433222223333667888999999888888773        3445666543  1


Q ss_pred             CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC---CCCccccee
Q 039497          414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD---GPWIDTMPS  490 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~---~~~~~~~~~  490 (642)
                                  ....-.. . ......+|..||++++..-   ++..|-+-+. +|+.   -..|..   ....+.+++
T Consensus       125 ------------~V~K~ks-s-~R~~~CsWtnDGqylalG~---~nGTIsiRNk-~gEe---k~~I~Rpgg~Nspiwsi~  183 (1081)
T KOG1538|consen  125 ------------SVSKHKS-S-SRIICCSWTNDGQYLALGM---FNGTISIRNK-NGEE---KVKIERPGGSNSPIWSIC  183 (1081)
T ss_pred             ------------hHHhhhh-h-eeEEEeeecCCCcEEEEec---cCceEEeecC-CCCc---ceEEeCCCCCCCCceEEE
Confidence                        1111111 1 3556789999999998765   3345655554 4664   223332   223445566


Q ss_pred             EecCCC-----EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          491 WSPKGD-----LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       491 ~spdG~-----~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                      |+|...     .+++..-        ...|-.+.++|.....-...+.         .+..+++-++|.+++....++  
T Consensus       184 ~~p~sg~G~~di~aV~DW--------~qTLSFy~LsG~~Igk~r~L~F---------dP~CisYf~NGEy~LiGGsdk--  244 (1081)
T KOG1538|consen  184 WNPSSGEGRNDILAVADW--------GQTLSFYQLSGKQIGKDRALNF---------DPCCISYFTNGEYILLGGSDK--  244 (1081)
T ss_pred             ecCCCCCCccceEEEEec--------cceeEEEEecceeecccccCCC---------CchhheeccCCcEEEEccCCC--
Confidence            666432     1222211        1124444444432221111111         234577789999999887765  


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497          566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       566 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                                     .|..+..+|-.+-.+.....++.++...|++|+++-.
T Consensus       245 ---------------~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G  281 (1081)
T KOG1538|consen  245 ---------------QLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVG  281 (1081)
T ss_pred             ---------------ceEEEeecCeEEeeccccceeEEEEEEccCCceEEEE
Confidence                           6777777776666666666677889999999998433

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.28  E-value=2.9e-05  Score=81.04  Aligned_cols=201  Identities=15%  Similarity=0.098  Sum_probs=129.4

Q ss_pred             ccEEcC-CCCEEEEEecCCCceeEEEEECCCC-CeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSP-DGGLIVFNHDFELNAGIKIAKSDGS-KRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~-~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      ...|.. +.+.|+..+   ..+.|-++|+... ...+++.    ...+..+.|++-.-.+++..      ..++.+++|+
T Consensus        92 DVkW~~~~~NlIAT~s---~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG------SQDg~vK~~D  162 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCS---TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG------SQDGTVKCWD  162 (839)
T ss_pred             hcccccchhhhheeec---CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec------CCCceEEEEe
Confidence            445543 334454443   2456666676542 1122222    45678889999887777776      4589999999


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT  487 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~  487 (642)
                      +..  +      .     ......... ..+..+.|||--...+++..++|  .|-+||+..-..  ...+++.+.+.+.
T Consensus       163 lR~--~------~-----S~~t~~~nS-ESiRDV~fsp~~~~~F~s~~dsG--~lqlWDlRqp~r--~~~k~~AH~GpV~  224 (839)
T KOG0269|consen  163 LRS--K------K-----SKSTFRSNS-ESIRDVKFSPGYGNKFASIHDSG--YLQLWDLRQPDR--CEKKLTAHNGPVL  224 (839)
T ss_pred             eec--c------c-----ccccccccc-hhhhceeeccCCCceEEEecCCc--eEEEeeccCchh--HHHHhhcccCceE
Confidence            987  3      1     112222222 57888999996544445555555  677788763321  2567888888888


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      .+.|+|++.+|+..+.+..        +.+|++.+.+...+..-....       ++..+.|-|+-.+.+.++.-...  
T Consensus       225 c~nwhPnr~~lATGGRDK~--------vkiWd~t~~~~~~~~tInTia-------pv~rVkWRP~~~~hLAtcsmv~d--  287 (839)
T KOG0269|consen  225 CLNWHPNREWLATGGRDKM--------VKIWDMTDSRAKPKHTINTIA-------PVGRVKWRPARSYHLATCSMVVD--  287 (839)
T ss_pred             EEeecCCCceeeecCCCcc--------EEEEeccCCCccceeEEeecc-------eeeeeeeccCccchhhhhhcccc--
Confidence            9999999999998886654        899999876554433222222       56789999998876555443322  


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCC
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                                  ..|++||+...
T Consensus       288 ------------tsV~VWDvrRP  298 (839)
T KOG0269|consen  288 ------------TSVHVWDVRRP  298 (839)
T ss_pred             ------------ceEEEEeeccc
Confidence                        28999998764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=98.27  E-value=0.00039  Score=67.05  Aligned_cols=172  Identities=17%  Similarity=0.208  Sum_probs=105.4

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..+++|+||+.++++....+...|++....+.. ..+........+.|+++|. +++....      .....++....  
T Consensus        27 ~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~~~g~~l~~PS~d~~g~-~W~v~~~------~~~~~~~~~~~--   96 (253)
T PF10647_consen   27 TSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-RPVLTGGSLTRPSWDPDGW-VWTVDDG------SGGVRVVRDSA--   96 (253)
T ss_pred             cceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-eeeccCCccccccccCCCC-EEEEEcC------CCceEEEEecC--
Confidence            467999999999998855667889998865544 4443555788999999966 4444421      33444443212  


Q ss_pred             CCCCCCCCCccccceEEccccCCC-CccCcEECCCCCeEEEEeCCCCceeEEEEECC---CCccc--cceeeCC-CCCCc
Q 039497          413 DPSDDNNREEIPCDVKILTKEETG-NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV---NGEFN--GDIRQLT-DGPWI  485 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~---~g~~~--~~~~~l~-~~~~~  485 (642)
                            .+..   ....+...... .+..+.+||||.++++.....+..+|++.-+.   .|...  .....+. .....
T Consensus        97 ------~g~~---~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~  167 (253)
T PF10647_consen   97 ------SGTG---EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD  167 (253)
T ss_pred             ------CCcc---eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence                  1111   23333332212 57789999999999999977677788877553   33110  0011222 22335


Q ss_pred             ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497          486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  529 (642)
                      +..+.|.+++..++.......     .... .+..+++..+.+.
T Consensus       168 v~~v~W~~~~~L~V~~~~~~~-----~~~~-~v~~dG~~~~~l~  205 (253)
T PF10647_consen  168 VTDVAWSDDSTLVVLGRSAGG-----PVVR-LVSVDGGPSTPLP  205 (253)
T ss_pred             ceeeeecCCCEEEEEeCCCCC-----ceeE-EEEccCCcccccC
Confidence            567899999986666655442     1112 4677777776663

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.26  E-value=6.7e-05  Score=76.93  Aligned_cols=255  Identities=12%  Similarity=0.106  Sum_probs=152.4

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY  274 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~  274 (642)
                      ..+|-|||.-++.+.  +.  .++.+|+..|.       ....+..+..-+..+++|.||++++.     |+....+-+|
T Consensus        17 d~afkPDGsqL~lAA--g~--rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFAS-----G~aDK~VI~W   80 (1081)
T KOG1538|consen   17 DIAFKPDGTQLILAA--GS--RLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFAS-----GSADKSVIIW   80 (1081)
T ss_pred             eeEECCCCceEEEec--CC--EEEEEeCCCcc-------cccccccccceEEEEEEccCCceecc-----CCCceeEEEe
Confidence            479999995444431  22  78888887764       66778888777889999999999887     5556678888


Q ss_pred             Eee------cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe
Q 039497          275 DLT------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH  348 (642)
Q Consensus       275 d~~------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  348 (642)
                      ..+      ..+...++...+.|=.+.|+..+...-       -+|...-+ .+.... .......-+|..||++++..-
T Consensus        81 ~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdF-------glWS~~qK-~V~K~k-ss~R~~~CsWtnDGqylalG~  151 (1081)
T KOG1538|consen   81 TSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDF-------GLWSPEQK-SVSKHK-SSSRIICCSWTNDGQYLALGM  151 (1081)
T ss_pred             cccccceeeeccCCeeeEeecCchHHHhhhcchhhc-------cccChhhh-hHHhhh-hheeEEEeeecCCCcEEEEec
Confidence            773      234445556667776666665532211       11111100 000000 001112458999999888853


Q ss_pred             cCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCC-----EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497          349 DFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEK-----HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN  419 (642)
Q Consensus       349 ~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~-----~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  419 (642)
                         ..+.|-+.+..+.+...+..    +..+.++.|+|...     .++++..       ..++.++.++.         
T Consensus       152 ---~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW-------~qTLSFy~LsG---------  212 (1081)
T KOG1538|consen  152 ---FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW-------GQTLSFYQLSG---------  212 (1081)
T ss_pred             ---cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec-------cceeEEEEecc---------
Confidence               34566666765555444443    45677888888632     4455443       45666666632         


Q ss_pred             CCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEE
Q 039497          420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA  499 (642)
Q Consensus       420 ~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~  499 (642)
                       ..+. +.+.|.    .....+++-|+|.+++.....   ..|.++.-+ |-.   +-.+......++.++..|+|++++
T Consensus       213 -~~Ig-k~r~L~----FdP~CisYf~NGEy~LiGGsd---k~L~~fTR~-Gvr---LGTvg~~D~WIWtV~~~PNsQ~v~  279 (1081)
T KOG1538|consen  213 -KQIG-KDRALN----FDPCCISYFTNGEYILLGGSD---KQLSLFTRD-GVR---LGTVGEQDSWIWTVQAKPNSQYVV  279 (1081)
T ss_pred             -eeec-ccccCC----CCchhheeccCCcEEEEccCC---CceEEEeec-CeE---EeeccccceeEEEEEEccCCceEE
Confidence             1100 122222    123346788999999877643   245555433 443   445555555677889999999999


Q ss_pred             EEecCCC
Q 039497          500 FSSNRHN  506 (642)
Q Consensus       500 ~~~~~~~  506 (642)
                      ....+++
T Consensus       280 ~GCqDGT  286 (1081)
T KOG1538|consen  280 VGCQDGT  286 (1081)
T ss_pred             EEEccCe
Confidence            8888765

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.26  E-value=1.4e-05  Score=75.98  Aligned_cols=169  Identities=9%  Similarity=0.077  Sum_probs=110.8

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC
Q 039497          400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL  479 (642)
Q Consensus       400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l  479 (642)
                      ...+.||+...  +      .     ..+.+..+. ..+..+.|+|-...|+.....  +..|+++|+.++.+   ++.+
T Consensus       166 Ge~i~IWD~~R--~------~-----Pv~smswG~-Dti~svkfNpvETsILas~~s--DrsIvLyD~R~~~P---l~KV  226 (433)
T KOG0268|consen  166 GEQIDIWDEQR--D------N-----PVSSMSWGA-DSISSVKFNPVETSILASCAS--DRSIVLYDLRQASP---LKKV  226 (433)
T ss_pred             Cceeeeccccc--C------C-----ccceeecCC-CceeEEecCCCcchheeeecc--CCceEEEecccCCc---ccee
Confidence            56789999865  2      2     556666655 456778999988877665532  23799999998876   5555


Q ss_pred             CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCcccccccceEEcCCCCEEEE
Q 039497          480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCFSADGEWLLF  558 (642)
Q Consensus       480 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~  558 (642)
                      .-. ..-+.++|+|++- .+..++.       ...||.+|+..-+. ..+.. ++..       -+.++.|||-|+-++.
T Consensus       227 i~~-mRTN~IswnPeaf-nF~~a~E-------D~nlY~~DmR~l~~p~~v~~-dhvs-------AV~dVdfsptG~Efvs  289 (433)
T KOG0268|consen  227 ILT-MRTNTICWNPEAF-NFVAANE-------DHNLYTYDMRNLSRPLNVHK-DHVS-------AVMDVDFSPTGQEFVS  289 (433)
T ss_pred             eee-ccccceecCcccc-ceeeccc-------cccceehhhhhhcccchhhc-ccce-------eEEEeccCCCcchhcc
Confidence            432 2345789999553 3333332       23499999864322 22222 3333       4678999999999988


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC--CCCCCcEEecCCceEEeecCCC
Q 039497          559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG--YENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~--~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      .+-+.                 .|-.+..+.+.-+-+....  -.+..+.||.|++|+++..+.+
T Consensus       290 gsyDk-----------------sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  290 GSYDK-----------------SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             ccccc-----------------eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence            77665                 4555566665555444332  2357889999999999877665

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.25  E-value=6.3e-05  Score=75.38  Aligned_cols=140  Identities=15%  Similarity=0.143  Sum_probs=89.3

Q ss_pred             CccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeec--CCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497          243 VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS--ANSEFIGYHRFRGESTEGQSTIPHLEPVAS  320 (642)
Q Consensus       243 ~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~  320 (642)
                      ..+..+.|-|.++.++.+....+    .+++||....  .....|.|+  +++..+..........            ..
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sG----nlyly~~~~~--~~~t~p~~~~~k~~~~f~i~t~ksk~~------------rN  281 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASG----NLYLYDKEIV--CGATAPSYQALKDGDQFAILTSKSKKT------------RN  281 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecC----ceEEeecccc--ccCCCCcccccCCCCeeEEeeeecccc------------CC
Confidence            35666778777766666656554    7888887332  223333333  4666555543322211            01


Q ss_pred             CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCccc
Q 039497          321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQS  398 (642)
Q Consensus       321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~  398 (642)
                      +.............+.|||||++||.++.+   .-|.+++.++.+..-+..  -+....+.|||||++|+...       
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqD---GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG-------  351 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQD---GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG-------  351 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecC---ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC-------
Confidence            222223333344567999999999999863   677788887766554444  56778999999999998875       


Q ss_pred             CCCeEEEEEEEe
Q 039497          399 ERATVQIARVSF  410 (642)
Q Consensus       399 ~~~~~~l~~~~~  410 (642)
                      ++.-+.+|.+..
T Consensus       352 EDDLVtVwSf~e  363 (636)
T KOG2394|consen  352 EDDLVTVWSFEE  363 (636)
T ss_pred             CcceEEEEEecc
Confidence            367788998865

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.00011  Score=66.36  Aligned_cols=211  Identities=12%  Similarity=0.109  Sum_probs=127.0

Q ss_pred             ceEEEEccCC--ceEecccCCCccCCceeCC--CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC----
Q 039497          121 ALYSTDLKAS--KFTRLTPYGVVDYSPSVSY--SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER----  192 (642)
Q Consensus       121 ~l~~~~~~~~--~~~~lt~~~~~~~~~~~SP--DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~----  192 (642)
                      .|+.+...++  ....|+.+.+.....+|..  -|..||..++++            .|.+|.-++|...+.....    
T Consensus        36 kIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg------------kVIiWke~~g~w~k~~e~~~h~~  103 (299)
T KOG1332|consen   36 KIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG------------KVIIWKEENGRWTKAYEHAAHSA  103 (299)
T ss_pred             EEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc------------eEEEEecCCCchhhhhhhhhhcc
Confidence            3454443332  2344555555555566655  699999998877            6889999998766655422    


Q ss_pred             -CCcceEeeCC--eEEEEEecCCCceEEEEEecCCCcccccCCccceee-CCCCCccccceeecC---C-----------
Q 039497          193 -GGWPTWSGDS--TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV-TPPGVHCFTPAAFHD---G-----------  254 (642)
Q Consensus       193 -~~~~~wspdg--~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~Spd---G-----------  254 (642)
                       ...++|.|.+  .+|+.+ ..||...|..++..++-       ...++ ..+...+..+.|.|-   |           
T Consensus       104 SVNsV~wapheygl~Laca-sSDG~vsvl~~~~~g~w-------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~  175 (299)
T KOG1332|consen  104 SVNSVAWAPHEYGLLLACA-SSDGKVSVLTYDSSGGW-------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV  175 (299)
T ss_pred             cceeecccccccceEEEEe-eCCCcEEEEEEcCCCCc-------cchhhhhccccccceeeecCcCCCccccccCccccc
Confidence             1356898887  466666 67899999998887542       22333 344555777777665   5           


Q ss_pred             cEEEEEEeccCCceeeEEEEEee----------cCCCCcccCCeecCCC----CEEEEEEeecCCCCCCcccceEeeccC
Q 039497          255 KRLAVATRRKNRNFRHIEIYDLT----------LNPNFHHYNPFVSANS----EFIGYHRFRGESTEGQSTIPHLEPVAS  320 (642)
Q Consensus       255 ~~l~~~~~~~~~~~~~i~~~d~~----------~~~~~~~~~~~~spDg----~~l~~~~~~~~~~~~~~~~~~~~~~~~  320 (642)
                      ++|+.     ++....+.+|+..          .++...+++.+|.|.-    ..|+..+.++.      .++|....+.
T Consensus       176 krlvS-----gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~------viIwt~~~e~  244 (299)
T KOG1332|consen  176 KRLVS-----GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT------VIIWTKDEEY  244 (299)
T ss_pred             ceeec-----cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc------EEEEEecCcc
Confidence            44544     4556678888772          2445556777888743    23555554444      4455444332


Q ss_pred             CCceeEEe-eeC--CCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497          321 PVKELRML-RLN--GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG  363 (642)
Q Consensus       321 ~~~~~~~~-~~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~  363 (642)
                      ..-+.++. .+.  ....+||..|+.|+.... +++..||.-++++
T Consensus       245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwke~~~G  289 (299)
T KOG1332|consen  245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG-DNKVTLWKENVDG  289 (299)
T ss_pred             CcccccccccCCcceEEEEEeccccEEEEecC-CcEEEEEEeCCCC
Confidence            21111111 122  245689999997777543 5566677666654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.00031  Score=63.60  Aligned_cols=188  Identities=13%  Similarity=0.105  Sum_probs=106.7

Q ss_pred             CCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497          340 DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS  415 (642)
Q Consensus       340 dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  415 (642)
                      -|..|+-.+. +  .++.++.-.++...+...    ...+.++.|.|.+--+.....     ..++.+.+..++.  +  
T Consensus        69 ~G~iLAScsY-D--gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca-----sSDG~vsvl~~~~--~--  136 (299)
T KOG1332|consen   69 FGTILASCSY-D--GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA-----SSDGKVSVLTYDS--S--  136 (299)
T ss_pred             cCcEeeEeec-C--ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEe-----eCCCcEEEEEEcC--C--
Confidence            4777776665 2  456666666665444332    567889999998654443332     2478999988877  3  


Q ss_pred             CCCCCCccccceEEccccCCCCccCcEECCC---C-----------CeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497          416 DDNNREEIPCDVKILTKEETGNNAFPSCSPD---G-----------KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD  481 (642)
Q Consensus       416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD---g-----------~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~  481 (642)
                         ++.    ....+.......+..+.|.|-   |           ++|+....   +..+-+|..+.++. .....|..
T Consensus       137 ---g~w----~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc---Dn~VkiW~~~~~~w-~~e~~l~~  205 (299)
T KOG1332|consen  137 ---GGW----TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC---DNLVKIWKFDSDSW-KLERTLEG  205 (299)
T ss_pred             ---CCc----cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCC---ccceeeeecCCcch-hhhhhhhh
Confidence               232    233333322256677888875   4           34443322   23455555555443 11234777


Q ss_pred             CCCcccceeEecCC----CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497          482 GPWIDTMPSWSPKG----DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL  557 (642)
Q Consensus       482 ~~~~~~~~~~spdG----~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~  557 (642)
                      +...+..++|.|.-    ..|+-.+.++      ..-||..+.+.+..+.-.......       .+..++||..|..|+
T Consensus       206 H~dwVRDVAwaP~~gl~~s~iAS~SqDg------~viIwt~~~e~e~wk~tll~~f~~-------~~w~vSWS~sGn~La  272 (299)
T KOG1332|consen  206 HKDWVRDVAWAPSVGLPKSTIASCSQDG------TVIIWTKDEEYEPWKKTLLEEFPD-------VVWRVSWSLSGNILA  272 (299)
T ss_pred             cchhhhhhhhccccCCCceeeEEecCCC------cEEEEEecCccCcccccccccCCc-------ceEEEEEeccccEEE
Confidence            77778888999854    2344444443      333444443333222111112222       568899999999998


Q ss_pred             EEEecC
Q 039497          558 FTANLG  563 (642)
Q Consensus       558 ~~~~~~  563 (642)
                      +...+.
T Consensus       273 Vs~GdN  278 (299)
T KOG1332|consen  273 VSGGDN  278 (299)
T ss_pred             EecCCc
Confidence            887765

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.23  E-value=1.7e-06  Score=56.26  Aligned_cols=36  Identities=28%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             eeecCCceeeeeceecCCCCCeEEEEEccC--CCcceEE
Q 039497           37 HRLTDGTSINFNAQFVDGQDQTIAFISERS--GSPRIYQ   73 (642)
Q Consensus        37 ~rlt~~~~~~~~~~~S~pDG~~laf~~~~~--g~~~l~~   73 (642)
                      +|||...+.+..|.|| |||++|+|++.+.  |..+||+
T Consensus         2 ~~~t~~~~~~~~p~~S-pDGk~i~f~s~~~~~g~~diy~   39 (39)
T PF07676_consen    2 KQLTNSPGDDGSPAWS-PDGKYIYFTSNRNDRGSFDIYV   39 (39)
T ss_dssp             EEES-SSSSEEEEEE--TTSSEEEEEEECT--SSEEEEE
T ss_pred             cCcccCCccccCEEEe-cCCCEEEEEecCCCCCCcCEEC
Confidence            6899999999999999 9999999999999  8899985

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.21  E-value=0.0026  Score=67.94  Aligned_cols=153  Identities=16%  Similarity=0.082  Sum_probs=101.1

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .+..++.|...+.+..    ..++++....+.......      ...+...++||+++.++....       ++++.+|.
T Consensus       165 ~I~~~~~ge~~~i~~~----~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~-------dGrI~vw~  233 (792)
T KOG1963|consen  165 SIVDNNSGEFKGIVHM----CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDS-------DGRILVWR  233 (792)
T ss_pred             cEEEcCCceEEEEEEe----eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEecc-------CCcEEEEe
Confidence            3466777775555442    456666665544111111      112456899999999987763       57788886


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT  487 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~  487 (642)
                      --.. +     +..   ...+.+.-+. ..+..++||+||.+|+-.. +.  .-|.+|.+.+++.    +-|......+.
T Consensus       234 d~~~-~-----~~~---~t~t~lHWH~-~~V~~L~fS~~G~~LlSGG-~E--~VLv~Wq~~T~~k----qfLPRLgs~I~  296 (792)
T KOG1963|consen  234 DFGS-S-----DDS---ETCTLLHWHH-DEVNSLSFSSDGAYLLSGG-RE--GVLVLWQLETGKK----QFLPRLGSPIL  296 (792)
T ss_pred             cccc-c-----ccc---ccceEEEecc-cccceeEEecCCceEeecc-cc--eEEEEEeecCCCc----ccccccCCeeE
Confidence            3110 0     011   1566777776 6788899999999987543 33  3788888888884    77777777888


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      ++.+|||+...+....++.        |.++....
T Consensus       297 ~i~vS~ds~~~sl~~~DNq--------I~li~~~d  323 (792)
T KOG1963|consen  297 HIVVSPDSDLYSLVLEDNQ--------IHLIKASD  323 (792)
T ss_pred             EEEEcCCCCeEEEEecCce--------EEEEeccc
Confidence            9999999998777766543        67666543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.19  E-value=0.00075  Score=63.11  Aligned_cols=267  Identities=11%  Similarity=0.060  Sum_probs=144.4

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY  274 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~  274 (642)
                      .++|||....++....=+|+.++|.+...+..       .++....+...+....||-||.+++...     ....+.+|
T Consensus        32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-------~~ka~~~~~~PvL~v~WsddgskVf~g~-----~Dk~~k~w   99 (347)
T KOG0647|consen   32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-------VPKAQQSHDGPVLDVCWSDDGSKVFSGG-----CDKQAKLW   99 (347)
T ss_pred             eeEeccccCceEEecccCCceEEEEEecCCcc-------cchhhhccCCCeEEEEEccCCceEEeec-----cCCceEEE
Confidence            46999966555554355788888888765332       3444455566788899999998777743     44489999


Q ss_pred             EeecC-------CCCcccCCeecCCCCE--EEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCC-EE
Q 039497          275 DLTLN-------PNFHHYNPFVSANSEF--IGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGG-LI  344 (642)
Q Consensus       275 d~~~~-------~~~~~~~~~~spDg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l  344 (642)
                      ||..+       +...+....|-+...+  |+.-+-+      .++..|..+-..+...+   ....+  .+..|-. -+
T Consensus       100 DL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD------KTlKfWD~R~~~pv~t~---~LPeR--vYa~Dv~~pm  168 (347)
T KOG0647|consen  100 DLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD------KTLKFWDTRSSNPVATL---QLPER--VYAADVLYPM  168 (347)
T ss_pred             EccCCCeeeeeecccceeEEEEecCCCcceeEecccc------cceeecccCCCCeeeee---eccce--eeehhccCce
Confidence            99543       2333334444443331  2221111      11333333221111111   12221  2222221 12


Q ss_pred             EEEecCCCceeEEEEECCCCCeeE--Eee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          345 VFNHDFELNAGIKIAKSDGSKRWT--LIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       345 ~~~~~~~~~~~l~~~d~~~~~~~~--l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                      +.+.  ....+|.++++.++....  ...  ..-+..++.-+|.+..+..+-       .+++.|..++.. +     ..
T Consensus       169 ~vVa--ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi-------EGrv~iq~id~~-~-----~~  233 (347)
T KOG0647|consen  169 AVVA--TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI-------EGRVAIQYIDDP-N-----PK  233 (347)
T ss_pred             eEEE--ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee-------cceEEEEecCCC-C-----cc
Confidence            2222  335788999997654221  111  344667777777776666653       456666666541 0     00


Q ss_pred             CccccceEEc---cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCE
Q 039497          421 EEIPCDVKIL---TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL  497 (642)
Q Consensus       421 ~~~~~~~~~l---~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~  497 (642)
                      ..-.++..+-   ....-..+..++|.|.-..|+.+.   ++..+-.||.+....   ++.-..++..+....|+.+|..
T Consensus       234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG---sDGtf~FWDkdar~k---Lk~s~~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG---SDGTFSFWDKDARTK---LKTSETHPQPITCCSFNRNGSI  307 (347)
T ss_pred             CceeEEEeccCCCCCCceEEecceEeecccceEEEec---CCceEEEecchhhhh---hhccCcCCCccceeEecCCCCE
Confidence            0000011110   011113456789999776777665   334667777664432   3444456667788899999999


Q ss_pred             EEEEecCC
Q 039497          498 IAFSSNRH  505 (642)
Q Consensus       498 l~~~~~~~  505 (642)
                      ++|+....
T Consensus       308 faYA~gYD  315 (347)
T KOG0647|consen  308 FAYALGYD  315 (347)
T ss_pred             EEEEeecc
Confidence            99987643

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=7.7e-06  Score=88.96  Aligned_cols=230  Identities=13%  Similarity=0.138  Sum_probs=142.6

Q ss_pred             CccEEcCCCCE---EEEEecCCCceeEEEEECCC----CCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497          333 SFPSFSPDGGL---IVFNHDFELNAGIKIAKSDG----SKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERA  401 (642)
Q Consensus       333 ~~~~~spdg~~---l~~~~~~~~~~~l~~~d~~~----~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  401 (642)
                      ..++|.+-|..   |+..+  ...+.|-+|+.+.    .+...+..    .+.+..+.|++...-++...      .+++
T Consensus        68 ~kL~W~~~g~~~~GlIaGG--~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG------a~~g  139 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGG--LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG------ADDG  139 (1049)
T ss_pred             eeeeecccCCCccceeecc--ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc------CCCC
Confidence            45688887776   23322  2335566666543    22222222    56788899999877444444      3489


Q ss_pred             eEEEEEEEeecCCCCCCCCCccccceEEccc---cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497          402 TVQIARVSFQLDPSDDNNREEIPCDVKILTK---EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ  478 (642)
Q Consensus       402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~  478 (642)
                      .+.||++..               ....++.   .....+..++|...-.+|+.....+|  ...+||+...+.   +..
T Consensus       140 eI~iWDlnn---------------~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg--~~~iWDlr~~~p---ii~  199 (1049)
T KOG0307|consen  140 EILIWDLNK---------------PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSG--RAVIWDLRKKKP---IIK  199 (1049)
T ss_pred             cEEEeccCC---------------cCCCCCCCCCCCcccceEeccchhhhHHhhccCCCC--CceeccccCCCc---ccc
Confidence            999999964               1122221   11135666788777677765554444  567788875543   455


Q ss_pred             CCCCCC--cccceeEecCCCE-EEEEecCCCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCC
Q 039497          479 LTDGPW--IDTMPSWSPKGDL-IAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       479 l~~~~~--~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      +.....  ....+.|+||.-. |+.++.+.     ....|-+||+.-.... ++. .+++.       .+..+.|.+.+.
T Consensus       200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd-----~~PviqlWDlR~assP~k~~-~~H~~-------GilslsWc~~D~  266 (1049)
T KOG0307|consen  200 LSDTPGRMHCSVLAWHPDHATQLLVASGDD-----SAPVIQLWDLRFASSPLKIL-EGHQR-------GILSLSWCPQDP  266 (1049)
T ss_pred             cccCCCccceeeeeeCCCCceeeeeecCCC-----CCceeEeecccccCCchhhh-ccccc-------ceeeeccCCCCc
Confidence            554433  3457899998844 66665554     4567889997543221 121 23443       467899999887


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecC
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      .+++++...+                +|..|+.++++ +-.+...+.+...+.|.|..--+++...
T Consensus       267 ~lllSsgkD~----------------~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~as  316 (1049)
T KOG0307|consen  267 RLLLSSGKDN----------------RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAAS  316 (1049)
T ss_pred             hhhhcccCCC----------------CeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhhe
Confidence            7877776643                89999999877 5567666666778899887754444433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.16  E-value=0.0014  Score=69.13  Aligned_cols=250  Identities=11%  Similarity=0.016  Sum_probs=127.6

Q ss_pred             eecCCcEEEEEEeccCCceeeEEEEEeec-------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCC
Q 039497          250 AFHDGKRLAVATRRKNRNFRHIEIYDLTL-------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV  322 (642)
Q Consensus       250 ~SpdG~~l~~~~~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (642)
                      ++|||+.+.....    ....+...|..+       .-........+++||++++......+..    ..+........ 
T Consensus       200 lpnDGk~l~~~~e----y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G----~tl~em~a~e~-  270 (635)
T PRK02888        200 LPNDGKDLDDPKK----YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEG----VTLAEMMAAER-  270 (635)
T ss_pred             cCCCCCEeecccc----eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccC----cceeeeccccC-
Confidence            4678886643321    222444444411       1122345678999999998885432211    11111111111 


Q ss_pred             ceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC-----CCeeE-EeecCCceeeeeecCCCEEEEEEcCCCc
Q 039497          323 KELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-----SKRWT-LIKDRTAFYNSWSPTEKHVIYTSTGPIF  396 (642)
Q Consensus       323 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-----~~~~~-l~~~~~~~~~~~spdg~~l~~~~~~~~~  396 (642)
                      ..+...... ....+.+||++..+ .    ...|-++|...     .+... +......+.+.+||||++++....    
T Consensus       271 d~~vvfni~-~iea~vkdGK~~~V-~----gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank----  340 (635)
T PRK02888        271 DWVVVFNIA-RIEEAVKAGKFKTI-G----GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK----  340 (635)
T ss_pred             ceEEEEchH-HHHHhhhCCCEEEE-C----CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC----
Confidence            111111111 12356788986554 2    35788888876     23333 333778899999999999988873    


Q ss_pred             ccCCCeEEEEEEEeec---CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC----
Q 039497          397 QSERATVQIARVSFQL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN----  469 (642)
Q Consensus       397 ~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~----  469 (642)
                        ....+.++++....   +++..+.. .   ....+.-+  ....+.+|.++|+  +|++.- -.++|.+|++++    
T Consensus       341 --lS~tVSVIDv~k~k~~~~~~~~~~~-~---vvaevevG--lGPLHTaFDg~G~--aytslf-~dsqv~kwn~~~a~~~  409 (635)
T PRK02888        341 --LSPTVTVIDVRKLDDLFDGKIKPRD-A---VVAEPELG--LGPLHTAFDGRGN--AYTTLF-LDSQIVKWNIEAAIRA  409 (635)
T ss_pred             --CCCcEEEEEChhhhhhhhccCCccc-e---EEEeeccC--CCcceEEECCCCC--EEEeEe-ecceeEEEehHHHHHH
Confidence              36778888775410   00000000 0   01111111  2344678988886  444421 335899999875    


Q ss_pred             --Cccccc-eeeCCCCCCcccce------eEecCCCEEEEEecCCCCC-----CCCceeEEEEeCCCCceEEeee
Q 039497          470 --GEFNGD-IRQLTDGPWIDTMP------SWSPKGDLIAFSSNRHNPD-----NVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       470 --g~~~~~-~~~l~~~~~~~~~~------~~spdG~~l~~~~~~~~~~-----~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                        |+.+.+ +..+.-+ +...+.      .-.|||++|+....-...+     --.+..--++|+.+.+.+.+..
T Consensus       410 ~~g~~~~~v~~k~dV~-y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d  483 (635)
T PRK02888        410 YKGEKVDPIVQKLDVH-YQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHD  483 (635)
T ss_pred             hccccCCcceecccCC-CccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEec
Confidence              221000 2223222 112222      3479999998776543211     0112234567888888777764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.14  E-value=0.00019  Score=67.55  Aligned_cols=199  Identities=16%  Similarity=0.187  Sum_probs=115.2

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      .-+|++|+..++....   ..+|.++...+........     +..+..+.|+|..++|+.++.       +.+.++|..
T Consensus        15 chAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~-------drnayVw~~   84 (361)
T KOG1523|consen   15 CHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH-------DRNAYVWTQ   84 (361)
T ss_pred             eeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC-------CCCcccccc
Confidence            4489999999998643   3567777776766333322     567788999999999998874       567778887


Q ss_pred             EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCccc
Q 039497          409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDT  487 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~  487 (642)
                      ..  ++++.+        .-.|.... +....+.|||.++.++..+... ...|+.+.-+..=.+  .+.|-. ....+.
T Consensus        85 ~~--~~~Wkp--------tlvLlRiN-rAAt~V~WsP~enkFAVgSgar-~isVcy~E~ENdWWV--sKhikkPirStv~  150 (361)
T KOG1523|consen   85 PS--GGTWKP--------TLVLLRIN-RAATCVKWSPKENKFAVGSGAR-LISVCYYEQENDWWV--SKHIKKPIRSTVT  150 (361)
T ss_pred             CC--CCeecc--------ceeEEEec-cceeeEeecCcCceEEeccCcc-EEEEEEEecccceeh--hhhhCCcccccee
Confidence            44  322211        11122222 4567789999999998876321 123333332210000  011111 123467


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCC-------C--cccccccceEEcCCCCEEEE
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG-------D--VDRERINHVCFSADGEWLLF  558 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~-------~--~~~~~~~~~~~S~Dg~~l~~  558 (642)
                      .+.|+|++-.|+..+.+..-   ..-..|+-+++.+...    ..+...+       +  ..+..+..+.|||+|..|++
T Consensus       151 sldWhpnnVLlaaGs~D~k~---rVfSayIK~Vdekpap----~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~law  223 (361)
T KOG1523|consen  151 SLDWHPNNVLLAAGSTDGKC---RVFSAYIKGVDEKPAP----TPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAW  223 (361)
T ss_pred             eeeccCCcceecccccCcce---eEEEEeeeccccCCCC----CCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeE
Confidence            88999998777777665421   2223344444432210    0100000       0  11235678899999999999


Q ss_pred             EEecC
Q 039497          559 TANLG  563 (642)
Q Consensus       559 ~~~~~  563 (642)
                      ...+.
T Consensus       224 v~Hds  228 (361)
T KOG1523|consen  224 VGHDS  228 (361)
T ss_pred             ecCCC
Confidence            99875

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.13  E-value=0.00025  Score=67.98  Aligned_cols=144  Identities=19%  Similarity=0.203  Sum_probs=97.3

Q ss_pred             CEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497          342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD  416 (642)
Q Consensus       342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  416 (642)
                      ++|+..-.    ..||++|+..-+.-.-..     ..+..++..++.+.+|+|-..     ...+.+.||++..      
T Consensus        98 ~RLvV~Le----e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s-----~t~GdV~l~d~~n------  162 (391)
T KOG2110|consen   98 KRLVVCLE----ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS-----TTSGDVVLFDTIN------  162 (391)
T ss_pred             ceEEEEEc----ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-----CCCceEEEEEccc------
Confidence            45555443    469999998755322211     223455566666779998754     3467888888754      


Q ss_pred             CCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC--CcccceeEecC
Q 039497          417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--WIDTMPSWSPK  494 (642)
Q Consensus       417 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~~~~~~~~spd  494 (642)
                        -.     ....+..+. +.+..++|++||..|+.++.+.  .-|.++.+.+|+.   +.++-.+.  ..+.+++|+||
T Consensus       163 --l~-----~v~~I~aH~-~~lAalafs~~G~llATASeKG--TVIRVf~v~~G~k---l~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  163 --LQ-----PVNTINAHK-GPLAALAFSPDGTLLATASEKG--TVIRVFSVPEGQK---LYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             --ce-----eeeEEEecC-CceeEEEECCCCCEEEEeccCc--eEEEEEEcCCccE---eeeeeCCceeeEEEEEEECCC
Confidence              12     455666665 7888899999999999988654  3556677778886   66665543  34567899999


Q ss_pred             CCEEEEEecCCCCCCCCceeEEEEe
Q 039497          495 GDLIAFSSNRHNPDNVEAFSLYVIK  519 (642)
Q Consensus       495 G~~l~~~~~~~~~~~~~~~~l~~~d  519 (642)
                      +++|...++.+      ..||+..+
T Consensus       230 s~~L~~sS~Te------TVHiFKL~  248 (391)
T KOG2110|consen  230 SQFLAASSNTE------TVHIFKLE  248 (391)
T ss_pred             CCeEEEecCCC------eEEEEEec
Confidence            99888888764      45555554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.13  E-value=0.00023  Score=66.82  Aligned_cols=215  Identities=20%  Similarity=0.228  Sum_probs=133.7

Q ss_pred             CCCCEEEEEecCCCceeEEEEECCCCCeeEEe--ecCCceeeeeecCCC--EEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI--KDRTAFYNSWSPTEK--HVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      -+|.+++-.   .....|++||+.........  +.+.+....|.++-.  .|+-++       +++.+.+|+...    
T Consensus        51 Vs~~~~aSG---ssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s-------dDG~i~iw~~~~----  116 (362)
T KOG0294|consen   51 VSGPYVASG---SSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS-------DDGHIIIWRVGS----  116 (362)
T ss_pred             ecceeEecc---CCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeec-------CCCcEEEEEcCC----
Confidence            345555443   34578999998776543322  267788889988765  676665       378899998743    


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK  494 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd  494 (642)
                            -+   ....+..+. +.+..++.+|-|+..+..+   ++..|.+||+-.|+.    ..+.+.......+.|+|.
T Consensus       117 ------W~---~~~slK~H~-~~Vt~lsiHPS~KLALsVg---~D~~lr~WNLV~Gr~----a~v~~L~~~at~v~w~~~  179 (362)
T KOG0294|consen  117 ------WE---LLKSLKAHK-GQVTDLSIHPSGKLALSVG---GDQVLRTWNLVRGRV----AFVLNLKNKATLVSWSPQ  179 (362)
T ss_pred             ------eE---Eeeeecccc-cccceeEecCCCceEEEEc---CCceeeeehhhcCcc----ceeeccCCcceeeEEcCC
Confidence                  11   344455555 6799999999997554444   455888999988884    444444445566899999


Q ss_pred             CCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497          495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP  573 (642)
Q Consensus       495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~  573 (642)
                      |.++++...+.         |-+|.++.... ..+...   .       ....+.|- ++..|++...++          
T Consensus       180 Gd~F~v~~~~~---------i~i~q~d~A~v~~~i~~~---~-------r~l~~~~l-~~~~L~vG~d~~----------  229 (362)
T KOG0294|consen  180 GDHFVVSGRNK---------IDIYQLDNASVFREIENP---K-------RILCATFL-DGSELLVGGDNE----------  229 (362)
T ss_pred             CCEEEEEeccE---------EEEEecccHhHhhhhhcc---c-------cceeeeec-CCceEEEecCCc----------
Confidence            99988887654         55555544332 112211   1       22344553 555565554432          


Q ss_pred             CCCCCCCcEEEEEcCCC-ceeeccCCCCCCCCcE-E-ecCCceEEeecCCC
Q 039497          574 NQFQPYGDLYVVKLDGS-GLRRLTWNGYENGTPA-W-HPGNQLDLGKLRLE  621 (642)
Q Consensus       574 ~~~~~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~-~-s~dg~~~~~~~~~~  621 (642)
                             .|-++|.+.. .+..+..+...+.++. | .|++.||++..+.|
T Consensus       230 -------~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  230 -------WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             -------eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence                   6777777743 3556666665555554 2 35667777766555

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.13  E-value=9.4e-05  Score=76.53  Aligned_cols=116  Identities=21%  Similarity=0.235  Sum_probs=87.6

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCe
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKF  449 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~  449 (642)
                      ...++++...|..++++.+..       +.+++|+++..        ++     ..+.+....  .+..-.+...|.|-|
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQ-------Drnirif~i~s--------gK-----q~k~FKgs~~~eG~lIKv~lDPSgiY  655 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQ-------DRNIRIFDIES--------GK-----QVKSFKGSRDHEGDLIKVILDPSGIY  655 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEec-------ccceEEEeccc--------cc-----eeeeecccccCCCceEEEEECCCccE
Confidence            456788899999999988874       78999999976        22     233332221  133344678889988


Q ss_pred             EEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       450 l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      |+..-.   +..|-++|.-+|+.   +.+.+.+...+..+.|++|=+.|+-.+.++        .|++|.+.
T Consensus       656 ~atScs---dktl~~~Df~sgEc---vA~m~GHsE~VTG~kF~nDCkHlISvsgDg--------CIFvW~lp  713 (1080)
T KOG1408|consen  656 LATSCS---DKTLCFVDFVSGEC---VAQMTGHSEAVTGVKFLNDCKHLISVSGDG--------CIFVWKLP  713 (1080)
T ss_pred             EEEeec---CCceEEEEeccchh---hhhhcCcchheeeeeecccchhheeecCCc--------eEEEEECc
Confidence            886653   34799999999998   788888888899999999999998887765        38888765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.09  E-value=0.00011  Score=75.28  Aligned_cols=244  Identities=11%  Similarity=0.058  Sum_probs=143.0

Q ss_pred             eCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecC
Q 039497          200 GDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLN  279 (642)
Q Consensus       200 pdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~  279 (642)
                      |.++.+|++ +.||...+|.++...+++   ...-...+..+...+..+++..+|+.|+.++.+.     ++.+|+....
T Consensus        35 ~~~ryLfTg-GRDg~i~~W~~~~d~~~~---s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt-----TVK~W~~~~~  105 (735)
T KOG0308|consen   35 PNGRYLFTG-GRDGIIRLWSVTQDSNEP---STPYIASMEHHSDWVNDIILCGNGKTLISASSDT-----TVKVWNAHKD  105 (735)
T ss_pred             CCCceEEec-CCCceEEEeccccccCCc---ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc-----eEEEeecccC
Confidence            444767777 788988888777665521   0001233444545677777788898888866554     7888876322


Q ss_pred             CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCC--CccEE-cCCCCEEEEEecCCCceeE
Q 039497          280 PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNG--SFPSF-SPDGGLIVFNHDFELNAGI  356 (642)
Q Consensus       280 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-spdg~~l~~~~~~~~~~~l  356 (642)
                      ...               +.                       ..  +....+  ..+++ .++...++-.   +-...|
T Consensus       106 ~~~---------------c~-----------------------st--ir~H~DYVkcla~~ak~~~lvaSg---GLD~~I  142 (735)
T KOG0308|consen  106 NTF---------------CM-----------------------ST--IRTHKDYVKCLAYIAKNNELVASG---GLDRKI  142 (735)
T ss_pred             cch---------------hH-----------------------hh--hhcccchheeeeecccCceeEEec---CCCccE
Confidence            100               00                       00  000000  11222 3333322221   335788


Q ss_pred             EEEECCCCCeeEEee-------------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcc
Q 039497          357 KIAKSDGSKRWTLIK-------------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI  423 (642)
Q Consensus       357 ~~~d~~~~~~~~l~~-------------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  423 (642)
                      +++|+..+..+.+..             ...+++++..+.|..|+-..       ....+++|+-..        ..   
T Consensus       143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg-------tek~lr~wDprt--------~~---  204 (735)
T KOG0308|consen  143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG-------TEKDLRLWDPRT--------CK---  204 (735)
T ss_pred             EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecC-------cccceEEecccc--------cc---
Confidence            999988774321111             23466677777774333332       367788998766        23   


Q ss_pred             ccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEec
Q 039497          424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN  503 (642)
Q Consensus       424 ~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~  503 (642)
                        +...|..+. ..+..+..++||+.++.++.+   ..|-+||+...+-   +..+.-+...++...-+|+=+.+|+...
T Consensus       205 --kimkLrGHT-dNVr~ll~~dDGt~~ls~sSD---gtIrlWdLgqQrC---l~T~~vH~e~VWaL~~~~sf~~vYsG~r  275 (735)
T KOG0308|consen  205 --KIMKLRGHT-DNVRVLLVNDDGTRLLSASSD---GTIRLWDLGQQRC---LATYIVHKEGVWALQSSPSFTHVYSGGR  275 (735)
T ss_pred             --ceeeeeccc-cceEEEEEcCCCCeEeecCCC---ceEEeeeccccce---eeeEEeccCceEEEeeCCCcceEEecCC
Confidence              667777766 778889999999999988743   3788888853332   2333334444666666777777777776


Q ss_pred             CCCCCCCCceeEEEEeCCC-CceEEeee
Q 039497          504 RHNPDNVEAFSLYVIKPDG-SGLRRIHV  530 (642)
Q Consensus       504 ~~~~~~~~~~~l~~~d~~~-~~~~~l~~  530 (642)
                      ++.        |++-|+.. .+.+.|..
T Consensus       276 d~~--------i~~Tdl~n~~~~tlick  295 (735)
T KOG0308|consen  276 DGN--------IYRTDLRNPAKSTLICK  295 (735)
T ss_pred             CCc--------EEecccCCchhheEeec
Confidence            665        99999987 34444443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.09  E-value=0.00021  Score=70.57  Aligned_cols=211  Identities=10%  Similarity=0.006  Sum_probs=130.4

Q ss_pred             ceeEEEEECCCCCeeE--EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          353 NAGIKIAKSDGSKRWT--LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~--l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      +..|.++.+......+  ....+.+..++-+|+|.+|+...       ..+++++|.+.+        |.     -...+
T Consensus        60 rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~-------i~g~lYlWelss--------G~-----LL~v~  119 (476)
T KOG0646|consen   60 RPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGT-------ISGNLYLWELSS--------GI-----LLNVL  119 (476)
T ss_pred             CccccccccCchhhhhhhcccccceeeeecCCCceEEEeec-------ccCcEEEEEecc--------cc-----HHHHH
Confidence            3456666654443222  11267788899999999887764       278999999987        33     44555


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC------CccccceeeCCCCCCcccceeEecCC--CEEEEEe
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN------GEFNGDIRQLTDGPWIDTMPSWSPKG--DLIAFSS  502 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~------g~~~~~~~~l~~~~~~~~~~~~spdG--~~l~~~~  502 (642)
                      ..+- ..+..+.||-||.+|+..+ ++|  .|..|.+.+      -..+++...+..+...+..+...+.|  -+|+..+
T Consensus       120 ~aHY-Q~ITcL~fs~dgs~iiTgs-kDg--~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS  195 (476)
T KOG0646|consen  120 SAHY-QSITCLKFSDDGSHIITGS-KDG--AVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS  195 (476)
T ss_pred             Hhhc-cceeEEEEeCCCcEEEecC-CCc--cEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence            5554 7788899999998876554 445  444444321      11112344455555555555555443  3466555


Q ss_pred             cCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcE
Q 039497          503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL  582 (642)
Q Consensus       503 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  582 (642)
                      .+..        +.+||+..+.+-.-..  ...       ...+++.+|-++.+|....++                 .|
T Consensus       196 ~D~t--------~k~wdlS~g~LLlti~--fp~-------si~av~lDpae~~~yiGt~~G-----------------~I  241 (476)
T KOG0646|consen  196 EDRT--------IKLWDLSLGVLLLTIT--FPS-------SIKAVALDPAERVVYIGTEEG-----------------KI  241 (476)
T ss_pred             CCce--------EEEEEeccceeeEEEe--cCC-------cceeEEEcccccEEEecCCcc-----------------eE
Confidence            5543        8999998886532221  122       457889999999888777665                 45


Q ss_pred             EEEEcCC-----------------CceeeccCCCC--CCCCcEEecCCceEEeecCCC
Q 039497          583 YVVKLDG-----------------SGLRRLTWNGY--ENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       583 ~~~~~~~-----------------~~~~~lt~~~~--~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      |..++.+                 -+...+..+.+  .+..++.+-||.++++....|
T Consensus       242 ~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg  299 (476)
T KOG0646|consen  242 FQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG  299 (476)
T ss_pred             EeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC
Confidence            5444322                 12334444444  567789999999998876555

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.08  E-value=0.00041  Score=65.31  Aligned_cols=160  Identities=14%  Similarity=0.159  Sum_probs=97.5

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE--e--ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL--I--KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l--~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      .+.|+|..++|+..+. +.+..+|... ++++-++.  .  .+.....+.|+|.++++++.+.       ...+.+|.++
T Consensus        60 gvdWap~snrIvtcs~-drnayVw~~~-~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg-------ar~isVcy~E  130 (361)
T KOG1523|consen   60 GVDWAPKSNRIVTCSH-DRNAYVWTQP-SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG-------ARLISVCYYE  130 (361)
T ss_pred             EEeecCCCCceeEccC-CCCccccccC-CCCeeccceeEEEeccceeeEeecCcCceEEeccC-------ccEEEEEEEe
Confidence            4699999999988765 2333444432 45443322  1  2777889999999999998873       4566777775


Q ss_pred             eecCCCCCCCCCccccceEE----ccccCCCCccCcEECCCCCeEEEEeCCCCceeE---EEEECCCCccc---------
Q 039497          410 FQLDPSDDNNREEIPCDVKI----LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL---FVLDAVNGEFN---------  473 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l---~~~d~~~g~~~---------  473 (642)
                      .  .            ...-    +.......+..+.|.|++-.++..+ -++.-.+   |+-+++....+         
T Consensus       131 ~--E------------NdWWVsKhikkPirStv~sldWhpnnVLlaaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PF  195 (361)
T KOG1523|consen  131 Q--E------------NDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPF  195 (361)
T ss_pred             c--c------------cceehhhhhCCccccceeeeeccCCcceecccc-cCcceeEEEEeeeccccCCCCCCCccCCcH
Confidence            5  2            1111    1111113456789999886665444 2343333   44455432211         


Q ss_pred             -cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497          474 -GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL  525 (642)
Q Consensus       474 -~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  525 (642)
                       ..+.......+.+....|||+|..|+|.+.+..        +.+.|..+...
T Consensus       196 G~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~--------v~~~da~~p~~  240 (361)
T KOG1523|consen  196 GQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST--------VSFVDAAGPSE  240 (361)
T ss_pred             HHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc--------eEEeecCCCch
Confidence             001112233456678899999999999998875        88888877653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=0.0003  Score=69.48  Aligned_cols=222  Identities=14%  Similarity=0.114  Sum_probs=138.3

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+.-+|+|.+|+-.   .-..+||+|.+.+|..-.+..  -..+..+.|+-||+.|+..+.       ++.+.+|.+...
T Consensus        86 al~s~n~G~~l~ag---~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk-------Dg~V~vW~l~~l  155 (476)
T KOG0646|consen   86 ALASSNLGYFLLAG---TISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK-------DGAVLVWLLTDL  155 (476)
T ss_pred             eeecCCCceEEEee---cccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC-------CccEEEEEEEee
Confidence            44668999876653   235789999999998644433  566888999999998877764       789999988653


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCC--CeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG--KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP  489 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg--~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~  489 (642)
                      .+..  +.+.  +.....+..+. ..+.++...+-|  .+|+.++.   +..+.+||+..|..   +..++. +.....+
T Consensus       156 v~a~--~~~~--~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~---D~t~k~wdlS~g~L---Llti~f-p~si~av  223 (476)
T KOG0646|consen  156 VSAD--NDHS--VKPLHIFSDHT-LSITDLQIGSGGTNARLYTASE---DRTIKLWDLSLGVL---LLTITF-PSSIKAV  223 (476)
T ss_pred             cccc--cCCC--ccceeeeccCc-ceeEEEEecCCCccceEEEecC---CceEEEEEecccee---eEEEec-CCcceeE
Confidence            2211  1110  11223334443 455555555432  34544442   34788999998886   555543 3456788


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc--eE------------Eee-ecCCCCCCCcccccccceEEcCCCC
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG--LR------------RIH-VAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~--~~------------~l~-~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      +.+|-++.+|.....+.        ||+.++.+-.  ..            ++. ..++.     .+..+..++.|-||.
T Consensus       224 ~lDpae~~~yiGt~~G~--------I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~-----~~~~ITcLais~Dgt  290 (476)
T KOG0646|consen  224 ALDPAERVVYIGTEEGK--------IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE-----NESAITCLAISTDGT  290 (476)
T ss_pred             EEcccccEEEecCCcce--------EEeeehhcCCcccccccccccccccceeeeecccc-----CCcceeEEEEecCcc
Confidence            99999998887777664        7776654322  11            000 00111     112567899999999


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEE
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAW  607 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~  607 (642)
                      .|+..+.++                 .+-+||..+.+ ++.++...+.+..+.+
T Consensus       291 lLlSGd~dg-----------------~VcvWdi~S~Q~iRtl~~~kgpVtnL~i  327 (476)
T KOG0646|consen  291 LLLSGDEDG-----------------KVCVWDIYSKQCIRTLQTSKGPVTNLQI  327 (476)
T ss_pred             EEEeeCCCC-----------------CEEEEecchHHHHHHHhhhccccceeEe
Confidence            887777665                 67777887766 4455534455555555

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.0024  Score=65.78  Aligned_cols=225  Identities=13%  Similarity=0.173  Sum_probs=141.1

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-c-CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-D-RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ....++|..++.......  .+...+........... . .....+..++++++++....      ....+.+.+..+  
T Consensus        36 v~~~~~g~~~~v~~~~~~--~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~------~~~~v~vid~~~--  105 (381)
T COG3391          36 VAVNPDGTQVYVANSGSN--DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTG------DSNTVSVIDTAT--  105 (381)
T ss_pred             eEEcCccCEEEEEeecCc--eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecC------CCCeEEEEcCcc--
Confidence            366888877766543222  55555554222222111 2 33456788899998887763      245666666433  


Q ss_pred             CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497          413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS  492 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s  492 (642)
                      +      .     ....+..+  .....++++|+++.++.+....+...+.++|..+++.   ...+..+. .....+++
T Consensus       106 ~------~-----~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~---~~~~~vG~-~P~~~a~~  168 (381)
T COG3391         106 N------T-----VLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV---TATIPVGN-TPTGVAVD  168 (381)
T ss_pred             c------c-----eeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE---EEEEecCC-CcceEEEC
Confidence            1      1     22222222  2556789999999998887643456899999998875   44433332 23678999


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec----CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA----GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE  568 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~  568 (642)
                      |+|++++......       ..|.++|.++....+ ...    ....       ....+.+++||++++.......    
T Consensus       169 p~g~~vyv~~~~~-------~~v~vi~~~~~~v~~-~~~~~~~~~~~-------~P~~i~v~~~g~~~yV~~~~~~----  229 (381)
T COG3391         169 PDGNKVYVTNSDD-------NTVSVIDTSGNSVVR-GSVGSLVGVGT-------GPAGIAVDPDGNRVYVANDGSG----  229 (381)
T ss_pred             CCCCeEEEEecCC-------CeEEEEeCCCcceec-cccccccccCC-------CCceEEECCCCCEEEEEeccCC----
Confidence            9999988887433       349999987766554 211    1111       3467899999998887765432    


Q ss_pred             CCCCCCCCCCCCcEEEEEcCCCceeec--cCCCCCCCCcEEecCCceEE
Q 039497          569 PVSWPNQFQPYGDLYVVKLDGSGLRRL--TWNGYENGTPAWHPGNQLDL  615 (642)
Q Consensus       569 ~~~~~~~~~~~~~l~~~~~~~~~~~~l--t~~~~~~~~~~~s~dg~~~~  615 (642)
                                ...+..++...+.....  ............+|+|.++.
T Consensus       230 ----------~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~y  268 (381)
T COG3391         230 ----------SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAY  268 (381)
T ss_pred             ----------CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEE
Confidence                      12788889888776654  22222456789999997763

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.07  E-value=4.6e-05  Score=76.33  Aligned_cols=64  Identities=20%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      +.+..++|||||++|+..+.++-        |.++|.++-++.-+-.....        ....+.||||||+|+....+.
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGf--------LRvF~fdt~eLlg~mkSYFG--------GLLCvcWSPDGKyIvtGGEDD  354 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGF--------LRIFDFDTQELLGVMKSYFG--------GLLCVCWSPDGKYIVTGGEDD  354 (636)
T ss_pred             ccccceeEcCCCceEEEEecCce--------EEEeeccHHHHHHHHHhhcc--------ceEEEEEcCCccEEEecCCcc
Confidence            35667899999999999998875        88888887666555443333        356789999999998776654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.06  E-value=0.0043  Score=58.39  Aligned_cols=288  Identities=11%  Similarity=0.048  Sum_probs=156.2

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC--cceEeeCCeEEEEEecCCCceEEEE
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFR  219 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~~l~~  219 (642)
                      .....|||.+..|+.++-++            .|.++++.....+........  ..+|.++.+++...  .+|  +|.+
T Consensus        16 IS~v~f~~~~~~LLvssWDg------------slrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~--~dg--~vr~   79 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDG------------SLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGG--LDG--QVRR   79 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccC------------cEEEEeccchhhhhheecCCceeeeeccCCceEEEec--cCc--eEEE
Confidence            45688999999998877555            577888777655544443332  34787776555443  466  7778


Q ss_pred             EecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEE
Q 039497          220 VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYH  299 (642)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~  299 (642)
                      +|+.++        ...++..++..+..+..++--..++..+.     ...|.+||.....               ....
T Consensus        80 ~Dln~~--------~~~~igth~~~i~ci~~~~~~~~vIsgsW-----D~~ik~wD~R~~~---------------~~~~  131 (323)
T KOG1036|consen   80 YDLNTG--------NEDQIGTHDEGIRCIEYSYEVGCVISGSW-----DKTIKFWDPRNKV---------------VVGT  131 (323)
T ss_pred             EEecCC--------cceeeccCCCceEEEEeeccCCeEEEccc-----CccEEEEeccccc---------------cccc
Confidence            888887        56677666555555555543333444333     3377777762100               0000


Q ss_pred             EeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE-Eee---cCCc
Q 039497          300 RFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT-LIK---DRTA  375 (642)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~~---~~~~  375 (642)
                      .                  +.. .         .-...+-.|++|+....   ...+.++|+..-.... ...   .--+
T Consensus       132 ~------------------d~~-k---------kVy~~~v~g~~LvVg~~---~r~v~iyDLRn~~~~~q~reS~lkyqt  180 (323)
T KOG1036|consen  132 F------------------DQG-K---------KVYCMDVSGNRLVVGTS---DRKVLIYDLRNLDEPFQRRESSLKYQT  180 (323)
T ss_pred             c------------------ccC-c---------eEEEEeccCCEEEEeec---CceEEEEEcccccchhhhccccceeEE
Confidence            0                  000 0         01133445677776332   3567777776543211 111   2235


Q ss_pred             eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC---CCCccCcEECCCCCeEEE
Q 039497          376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE---TGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~SpDg~~l~~  452 (642)
                      ..++.-|++.-.+..+-       ++++.+=.++.  ..+  ....+-.++..+.....   ...+..++|+|--+.++.
T Consensus       181 R~v~~~pn~eGy~~sSi-------eGRVavE~~d~--s~~--~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT  249 (323)
T KOG1036|consen  181 RCVALVPNGEGYVVSSI-------EGRVAVEYFDD--SEE--AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT  249 (323)
T ss_pred             EEEEEecCCCceEEEee-------cceEEEEccCC--chH--HhhhceeEEeeecccCCceEEEEeceeEeccccceEEe
Confidence            56777776655554442       23333222222  000  00000011111111111   023567899997656654


Q ss_pred             EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCC----CCCCceeEEEEeCC
Q 039497          453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP----DNVEAFSLYVIKPD  521 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~----~~~~~~~l~~~d~~  521 (642)
                      ..   .+.-|-+||+...+.   +.++...+..+...+|+.||..||.+..-...    +....+.|++.++.
T Consensus       250 gG---sDG~V~~Wd~~~rKr---l~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~  316 (323)
T KOG1036|consen  250 GG---SDGIVNIWDLFNRKR---LKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLT  316 (323)
T ss_pred             cC---CCceEEEccCcchhh---hhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEecc
Confidence            43   334788899987766   78888777778889999999999988764210    02234456666654

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=98.04  E-value=0.0058  Score=67.31  Aligned_cols=288  Identities=17%  Similarity=0.120  Sum_probs=154.3

Q ss_pred             cccceeecCCcEEEEEEec----cCCceeeEEEEEe----ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe
Q 039497          245 CFTPAAFHDGKRLAVATRR----KNRNFRHIEIYDL----TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE  316 (642)
Q Consensus       245 ~~~~~~SpdG~~l~~~~~~----~~~~~~~i~~~d~----~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~  316 (642)
                      +..+.++|+|+.+++....    .......+++.|.    ..........+.|||||+.+++....+..    ...+++.
T Consensus        15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~----~~~l~l~   90 (620)
T COG1506          15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKTVRLLTFGGGVSELRWSPDGSVLAFVSTDGGR----VAQLYLV   90 (620)
T ss_pred             ccCcccCCCCceeEEeeccccccccccccceEEEecccccccccCCcccccccCCCCCEEEEEeccCCC----cceEEEE
Confidence            3345667888888876543    1234456777663    33445566788999999999999733332    2445555


Q ss_pred             eccCCCceeEEeeeCCCccEEcCCCCEEEEEec-----CC-------------------CceeEEEEECCCCCeeEEee-
Q 039497          317 PVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD-----FE-------------------LNAGIKIAKSDGSKRWTLIK-  371 (642)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-----~~-------------------~~~~l~~~d~~~~~~~~l~~-  371 (642)
                      ...+   .+...........|+|+|+++++...     .+                   ....+++++.++ ....+.. 
T Consensus        91 ~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~  166 (620)
T COG1506          91 DVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLG  166 (620)
T ss_pred             ecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCC
Confidence            5442   23334445567789999999988211     01                   233455555544 1111111 


Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      ...+....+.++++.++.......   ......-..+... .     ++     .+..++... .....+.|.+||+.++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~-----~~-----~~~~~~~~~-~~~~~~~~~~~gk~~~  231 (620)
T COG1506         167 NLDVVSFATDGDGRLVASIRLDDD---ADPWVTNLYVLIE-G-----NG-----ELESLTPGE-GSISKLAFDADGKSIA  231 (620)
T ss_pred             CCceeeeeeCCCCceeEEeeeccc---cCCceEeeEEEec-C-----CC-----ceEEEcCCC-ceeeeeeeCCCCCeeE
Confidence            333445556666676666554211   0112222222110 0     23     566666665 5677889999999888


Q ss_pred             EEeCCCC-----ceeEEEEECCCCccccceee-CCCCC--CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497          452 FRSGRSG-----HKNLFVLDAVNGEFNGDIRQ-LTDGP--WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS  523 (642)
Q Consensus       452 ~~~~~~g-----~~~l~~~d~~~g~~~~~~~~-l~~~~--~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~  523 (642)
                      +......     ...+++++...++.    .. +....  .......+.-++..++|......    +...++..+..++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~l~~~~~~~~  303 (620)
T COG1506         232 LLGTESDRGLAEGDFILLLDGELGEV----DGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGG----GSSPLFRVDDLGG  303 (620)
T ss_pred             EeccCCccCccccceEEEEecccccc----ceeeccCCcccCcHHhccccCCCcEEEEEecCC----CceEEEEEeccCC
Confidence            8775543     22566666444442    22 11111  11111222345566666666522    3334444443333


Q ss_pred             ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc
Q 039497          524 GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL  587 (642)
Q Consensus       524 ~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  587 (642)
                      ....+.. . .         .....|+.+++.+++.......             ..++|.++.
T Consensus       304 ~~~~~~~-~-~---------~~v~~f~~~~~~~~~~~s~~~~-------------p~~i~~~~~  343 (620)
T COG1506         304 GVEGLSG-D-D---------GGVPGFDVDGRKLALAYSSPTE-------------PPEIYLYDR  343 (620)
T ss_pred             ceeeecC-C-C---------ceEEEEeeCCCEEEEEecCCCC-------------ccceEEEcC
Confidence            3322221 1 1         2346677799999988766542             248998876

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=98.00  E-value=0.00084  Score=73.17  Aligned_cols=137  Identities=19%  Similarity=0.248  Sum_probs=87.1

Q ss_pred             CCEEEEEEeccCCCcccccccceEEEEccCCceEec-ccCCCccCCceeCCCCcEEEE-EecCCCCCCCCCCCCeeeEEE
Q 039497          100 NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRL-TPYGVVDYSPSVSYSGKFIAV-ASYESRPWPGEFHELNTDIVV  177 (642)
Q Consensus       100 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l-t~~~~~~~~~~~SPDG~~la~-~~~~~~~~~~~~~~~~~~l~~  177 (642)
                      ..+|+|+....         ++|..+|..+..++.+ ........+|+|||||++||| ++...       -.+...||+
T Consensus       318 ~tkiAfv~~~~---------~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~-------~~g~s~vYv  381 (912)
T TIGR02171       318 KAKLAFRNDVT---------GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEG-------LPGKSSVYV  381 (912)
T ss_pred             eeeEEEEEcCC---------CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecC-------CCCCceEEE
Confidence            55788887632         2699999999999988 667667789999999999999 44322       113567999


Q ss_pred             EEecCCC--ceeEeecCCCcceEe--eCC--eEEEEEecCCCc-------eEEEEEecCCCcccccCCccceeeCCCCCc
Q 039497          178 FQESDPN--KRVIVCERGGWPTWS--GDS--TIYFHRQADDGW-------WSIFRVSFPENLEFLGFPIAPTRVTPPGVH  244 (642)
Q Consensus       178 ~~~~~g~--~~~l~~~~~~~~~ws--pdg--~~~~~~~~~~g~-------~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  244 (642)
                      .++.+..  ..+|-.+....|.|-  ..|  -|+|+....++.       ..-|.+....|+     ...+++|...   
T Consensus       382 ~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gk-----fg~p~kl~dg---  453 (912)
T TIGR02171       382 RNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGK-----FGTPKKLFDG---  453 (912)
T ss_pred             EehhccCCCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCC-----CCCchhhhcc---
Confidence            9987554  556666666788885  555  466665332221       255666665542     0133444433   


Q ss_pred             cccceeecCCcEEEEEE
Q 039497          245 CFTPAAFHDGKRLAVAT  261 (642)
Q Consensus       245 ~~~~~~SpdG~~l~~~~  261 (642)
                      .++.-+|.|.+ |+++.
T Consensus       454 a~hggvs~~~~-lavtg  469 (912)
T TIGR02171       454 AYHGGVSEDLN-LAVSG  469 (912)
T ss_pred             ccccccccCCc-eeeeh
Confidence            23334455555 55543

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=97.97  E-value=0.002  Score=60.37  Aligned_cols=257  Identities=11%  Similarity=0.067  Sum_probs=133.5

Q ss_pred             eeeceecCCCCCeEEEEEccCCCcceEEEcCCCCc-ccccCCCCCCcccccccc-CCCEEEEEEeccCCCcccccccceE
Q 039497           46 NFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSK-TELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQIFKSWSALY  123 (642)
Q Consensus        46 ~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~  123 (642)
                      .+..+|| |.-..++-.+..+|..++|.+...|.. +......++..+  -..| +++..+|....+.         ++-
T Consensus        30 IS~l~FS-P~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL--~v~WsddgskVf~g~~Dk---------~~k   97 (347)
T KOG0647|consen   30 ISALAFS-PQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVL--DVCWSDDGSKVFSGGCDK---------QAK   97 (347)
T ss_pred             hheeEec-cccCceEEecccCCceEEEEEecCCcccchhhhccCCCeE--EEEEccCCceEEeeccCC---------ceE
Confidence            4677899 844444447889999999999544421 111111111111  1123 5556666666542         333


Q ss_pred             EEEccCCceEecccCCCccCCceeCCCCc--EEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeC
Q 039497          124 STDLKASKFTRLTPYGVVDYSPSVSYSGK--FIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGD  201 (642)
Q Consensus       124 ~~~~~~~~~~~lt~~~~~~~~~~~SPDG~--~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspd  201 (642)
                      ++++.++++.++..+.+......|=+-..  .|+..+-+.            .|-.||.....+.....-.  .-.+..|
T Consensus        98 ~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK------------TlKfWD~R~~~pv~t~~LP--eRvYa~D  163 (347)
T KOG0647|consen   98 LWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK------------TLKFWDTRSSNPVATLQLP--ERVYAAD  163 (347)
T ss_pred             EEEccCCCeeeeeecccceeEEEEecCCCcceeEeccccc------------ceeecccCCCCeeeeeecc--ceeeehh
Confidence            44999999999998887776677655554  566666554            5667777654432221100  0144444


Q ss_pred             C--eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-CCccccceeecCCcEEEEEEeccCCceeeEEEEEeec
Q 039497          202 S--TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL  278 (642)
Q Consensus       202 g--~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~  278 (642)
                      -  .+++++.+ +  .+|..+++.++..      +.+++..+ ......++.-.|++..+..+..+     .+.+..+..
T Consensus       164 v~~pm~vVata-~--r~i~vynL~n~~t------e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-----rv~iq~id~  229 (347)
T KOG0647|consen  164 VLYPMAVVATA-E--RHIAVYNLENPPT------EFKRIESPLKWQTRCVACFQDKDGFALGSIEG-----RVAIQYIDD  229 (347)
T ss_pred             ccCceeEEEec-C--CcEEEEEcCCCcc------hhhhhcCcccceeeEEEEEecCCceEeeeecc-----eEEEEecCC
Confidence            4  34555422 2  2566666655421      33444443 56677777767766665543332     233332211


Q ss_pred             ------------------CC-CCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC
Q 039497          279 ------------------NP-NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP  339 (642)
Q Consensus       279 ------------------~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  339 (642)
                                        .. ...+...++.|-=..|+....+|.      ...|......+....+........-.|+.
T Consensus       230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt------f~FWDkdar~kLk~s~~~~qpItcc~fn~  303 (347)
T KOG0647|consen  230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT------FSFWDKDARTKLKTSETHPQPITCCSFNR  303 (347)
T ss_pred             CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce------EEEecchhhhhhhccCcCCCccceeEecC
Confidence                              00 122345566675556666544444      22232222222111111222334558899


Q ss_pred             CCCEEEEEe
Q 039497          340 DGGLIVFNH  348 (642)
Q Consensus       340 dg~~l~~~~  348 (642)
                      +|+.++|..
T Consensus       304 ~G~ifaYA~  312 (347)
T KOG0647|consen  304 NGSIFAYAL  312 (347)
T ss_pred             CCCEEEEEe
Confidence            999998854

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=97.94  E-value=0.048  Score=58.68  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=74.6

Q ss_pred             CCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeec-cCCCceeEEeeeC---CCccEEcCCCCEEEEEecCCCceeE
Q 039497          281 NFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPV-ASPVKELRMLRLN---GSFPSFSPDGGLIVFNHDFELNAGI  356 (642)
Q Consensus       281 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~~~l  356 (642)
                      .......++||.++.++..-.+|+      ...|...- +....+.+.....   ....+||+||..|+-.+.   ...+
T Consensus       205 tf~~t~~~~spn~~~~Aa~d~dGr------I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~---E~VL  275 (792)
T KOG1963|consen  205 TFNITCVALSPNERYLAAGDSDGR------ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR---EGVL  275 (792)
T ss_pred             cccceeEEeccccceEEEeccCCc------EEEEeccccccccccceEEEecccccceeEEecCCceEeeccc---ceEE
Confidence            333556789999998888766655      33343322 2222333344333   256799999998776332   3567


Q ss_pred             EEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          357 KIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       357 ~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      .++.+++++.+.|.. ...+.++.+|||+...+.+..       ++.+++...
T Consensus       276 v~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~-------DNqI~li~~  321 (792)
T KOG1963|consen  276 VLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLE-------DNQIHLIKA  321 (792)
T ss_pred             EEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEec-------CceEEEEec
Confidence            778888888444444 778999999999998877763       678887766

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=97.92  E-value=0.00031  Score=66.99  Aligned_cols=186  Identities=12%  Similarity=0.023  Sum_probs=126.6

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      .+.+.++.+.|-..+++..+       .+..+.||++.+        +.     ....|+.+. ..+..+++|+---|++
T Consensus       151 lgWVr~vavdP~n~wf~tgs-------~DrtikIwDlat--------g~-----LkltltGhi-~~vr~vavS~rHpYlF  209 (460)
T KOG0285|consen  151 LGWVRSVAVDPGNEWFATGS-------ADRTIKIWDLAT--------GQ-----LKLTLTGHI-ETVRGVAVSKRHPYLF  209 (460)
T ss_pred             cceEEEEeeCCCceeEEecC-------CCceeEEEEccc--------Ce-----EEEeecchh-heeeeeeecccCceEE
Confidence            35577888888877776665       378999999987        33     445556555 6778899998766665


Q ss_pred             EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                      -..   .+.+|--||+...+.   ++.-..+-..+..+...|--+.|+..+.+..        +.+||+.+.....+.. 
T Consensus       210 s~g---edk~VKCwDLe~nkv---IR~YhGHlS~V~~L~lhPTldvl~t~grDst--------~RvWDiRtr~~V~~l~-  274 (460)
T KOG0285|consen  210 SAG---EDKQVKCWDLEYNKV---IRHYHGHLSGVYCLDLHPTLDVLVTGGRDST--------IRVWDIRTRASVHVLS-  274 (460)
T ss_pred             Eec---CCCeeEEEechhhhh---HHHhccccceeEEEeccccceeEEecCCcce--------EEEeeecccceEEEec-
Confidence            444   234889999987664   3443444445666788887776766665543        8999998876554443 


Q ss_pred             CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC-ceeeccCCCCCCCCcEEecC
Q 039497          532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS-GLRRLTWNGYENGTPAWHPG  610 (642)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~~s~d  610 (642)
                      ++..       .+..+.+.|-.-.++..+.+.                 .|-+||+..+ ....||.+.-.+..+...|.
T Consensus       275 GH~~-------~V~~V~~~~~dpqvit~S~D~-----------------tvrlWDl~agkt~~tlt~hkksvral~lhP~  330 (460)
T KOG0285|consen  275 GHTN-------PVASVMCQPTDPQVITGSHDS-----------------TVRLWDLRAGKTMITLTHHKKSVRALCLHPK  330 (460)
T ss_pred             CCCC-------cceeEEeecCCCceEEecCCc-----------------eEEEeeeccCceeEeeecccceeeEEecCCc
Confidence            5555       567788877666688888775                 5667777654 46678877766667777776


Q ss_pred             CceEEee
Q 039497          611 NQLDLGK  617 (642)
Q Consensus       611 g~~~~~~  617 (642)
                      ...|++.
T Consensus       331 e~~fASa  337 (460)
T KOG0285|consen  331 ENLFASA  337 (460)
T ss_pred             hhhhhcc
Confidence            6656554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=97.91  E-value=0.0019  Score=62.72  Aligned_cols=197  Identities=11%  Similarity=0.081  Sum_probs=117.5

Q ss_pred             CCCCcccCCeecCCC-CEEEEEEeecCCCCCCcccceEeeccCCCcee-----EEe--eeCCCccEEcCCCCEEEEEecC
Q 039497          279 NPNFHHYNPFVSANS-EFIGYHRFRGESTEGQSTIPHLEPVASPVKEL-----RML--RLNGSFPSFSPDGGLIVFNHDF  350 (642)
Q Consensus       279 ~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~spdg~~l~~~~~~  350 (642)
                      ++.+...+..|.|-. ..|+..+++-.      ..+|..+-.+-...+     .+.  .-......|+|...-+++.+  
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~------v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa--  150 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTK------VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA--  150 (472)
T ss_pred             CccccccccccCccCCceeecCCCCce------EEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc--
Confidence            455556677888844 44555433322      344444332221111     111  11124568888876666644  


Q ss_pred             CCceeEEEEECCCCCee-EEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497          351 ELNAGIKIAKSDGSKRW-TLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI  429 (642)
Q Consensus       351 ~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  429 (642)
                      +..+.|.++|+.+++.. .+.+...+.++.|+-||..|+.++.       +..++||+...        +.     ....
T Consensus       151 g~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttck-------DKkvRv~dpr~--------~~-----~v~e  210 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCK-------DKKVRVIDPRR--------GT-----VVSE  210 (472)
T ss_pred             cCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecc-------cceeEEEcCCC--------Cc-----Eeee
Confidence            45678899999988743 2333667889999999999998875       67889988755        11     2222


Q ss_pred             ccccCCCCccCcEECCCCCeEEEEe-CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497          430 LTKEETGNNAFPSCSPDGKFLVFRS-GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       430 l~~~~~~~~~~~~~SpDg~~l~~~~-~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      -..+.........|-.+|+ |+.+. .+-...++-+||...=+.+.....|.... .+-.|.|.||-+.||..+...
T Consensus       211 ~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD  285 (472)
T KOG0303|consen  211 GVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYLCGKGD  285 (472)
T ss_pred             cccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCC-ceEEeeecCCCCEEEEEecCC
Confidence            2233323455677888998 43332 34445588889876544322234454443 356789999988777776544

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=97.87  E-value=0.01  Score=65.38  Aligned_cols=293  Identities=17%  Similarity=0.128  Sum_probs=152.4

Q ss_pred             ccCCeecCCCCEEEEEEeecCCC-CCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe-cCCCceeEEEEEC
Q 039497          284 HYNPFVSANSEFIGYHRFRGEST-EGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH-DFELNAGIKIAKS  361 (642)
Q Consensus       284 ~~~~~~spDg~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~l~~~d~  361 (642)
                      ...+..+|++..+++....-... .......|+...+.  ............+.|+|||+.+++.. ......++|+++.
T Consensus        15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~   92 (620)
T COG1506          15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDV   92 (620)
T ss_pred             ccCcccCCCCceeEEeeccccccccccccceEEEeccc--ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEEec
Confidence            34567888888888876531111 01112233322111  11111122335678999999999987 3344578999998


Q ss_pred             CCCCeeEEeecCCceeeeeecCCCEEEEEEcCCC----------------cccC-C-CeEEEEEEEeecCCCCCCCCCcc
Q 039497          362 DGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI----------------FQSE-R-ATVQIARVSFQLDPSDDNNREEI  423 (642)
Q Consensus       362 ~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~----------------~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~  423 (642)
                      . +  ........+....|+|+|+.+++......                +... . ....++.++.  .      +   
T Consensus        93 ~-g--~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~--~------~---  158 (620)
T COG1506          93 G-G--LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDI--E------S---  158 (620)
T ss_pred             C-C--ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEcc--C------c---
Confidence            8 4  22222456778899999999998322100                0000 1 1233333332  0      0   


Q ss_pred             ccceEEccccCCCCccCcEECCCCCeEEEEeCCCC----ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEE
Q 039497          424 PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIA  499 (642)
Q Consensus       424 ~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g----~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~  499 (642)
                        ....+.... .....+.+.++++.++.......    ....+.+...++.    +..++........+.|.++|+.++
T Consensus       159 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~gk~~~  231 (620)
T COG1506         159 --KLIKLGLGN-LDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE----LESLTPGEGSISKLAFDADGKSIA  231 (620)
T ss_pred             --ccccccCCC-CceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc----eEEEcCCCceeeeeeeCCCCCeeE
Confidence              111222222 34445566666777666554332    1233444334566    477777777788899999999888


Q ss_pred             EEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec-CCcccCCCCCCCCCCC
Q 039497          500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL-GAVMAEPVSWPNQFQP  578 (642)
Q Consensus       500 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~-~~~~~~~~~~~~~~~~  578 (642)
                      +........+.....+++++...++...........      .....+.+.-++..++|...+ .+.             
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~-------------  292 (620)
T COG1506         232 LLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDT------RGAWAVEGGLDGDGLLFIATDGGGS-------------  292 (620)
T ss_pred             EeccCCccCccccceEEEEeccccccceeeccCCcc------cCcHHhccccCCCcEEEEEecCCCc-------------
Confidence            887765433455666777773333333311111000      012223333567777777766 321             


Q ss_pred             CCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          579 YGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       579 ~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                       ..++.+...++....+....+.  ...|+.++..++...+..
T Consensus       293 -~~l~~~~~~~~~~~~~~~~~~~--v~~f~~~~~~~~~~~s~~  332 (620)
T COG1506         293 -SPLFRVDDLGGGVEGLSGDDGG--VPGFDVDGRKLALAYSSP  332 (620)
T ss_pred             -eEEEEEeccCCceeeecCCCce--EEEEeeCCCEEEEEecCC
Confidence             1444444333333333332222  345555776665554444

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=97.85  E-value=0.00071  Score=62.83  Aligned_cols=204  Identities=14%  Similarity=0.102  Sum_probs=121.1

Q ss_pred             cCCceeeeeecCCCEEEEEEcC-CCcccCCCeEEEEEEEeecCCCCCCCC-CccccceEEccccCCCCccCcEECCCCCe
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTG-PIFQSERATVQIARVSFQLDPSDDNNR-EEIPCDVKILTKEETGNNAFPSCSPDGKF  449 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~SpDg~~  449 (642)
                      .+.+..++-+|-.+.|+.+... ..-...-....||.+..  +-.  .+. ..+. ....|....-+.+..+.|-||++.
T Consensus        63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe--~~~--~S~~~tlE-~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPE--PLG--QSNSSTLE-CVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccc--ccC--ccccchhh-HhhcCCHHHhCceeeEEEcCCCCe
Confidence            5678888888876666554432 10011124567888865  200  000 0000 222233222245677899999999


Q ss_pred             EEEEeCCCCceeEEEEECCCCccccceeeCCCC----CCcccceeEec--CCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497          450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG----PWIDTMPSWSP--KGDLIAFSSNRHNPDNVEAFSLYVIKPDGS  523 (642)
Q Consensus       450 l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~----~~~~~~~~~sp--dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~  523 (642)
                      ++....    .+|.+|+++.+.. .....+...    .....+-+|||  ||+.++.++...         |+-||+.+.
T Consensus       138 lasm~d----n~i~l~~l~ess~-~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t---------l~~~D~RT~  203 (370)
T KOG1007|consen  138 LASMDD----NNIVLWSLDESSK-IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST---------LQFWDLRTM  203 (370)
T ss_pred             eEEecc----CceEEEEcccCcc-hheeecccccccccceecccccCCCCccceEEEeCCCc---------EEEEEccch
Confidence            987752    3788888876653 001111111    12234558998  899998887765         899999865


Q ss_pred             ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC--CceeeccCCCCC
Q 039497          524 GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG--SGLRRLTWNGYE  601 (642)
Q Consensus       524 ~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lt~~~~~  601 (642)
                      +...-....+..       .+.++-|.|+-+.++.+..+.+                .|..||...  ..++.|..+.-+
T Consensus       204 ~~~~sI~dAHgq-------~vrdlDfNpnkq~~lvt~gDdg----------------yvriWD~R~tk~pv~el~~HsHW  260 (370)
T KOG1007|consen  204 KKNNSIEDAHGQ-------RVRDLDFNPNKQHILVTCGDDG----------------YVRIWDTRKTKFPVQELPGHSHW  260 (370)
T ss_pred             hhhcchhhhhcc-------eeeeccCCCCceEEEEEcCCCc----------------cEEEEeccCCCccccccCCCceE
Confidence            433222222322       5778999999999988887765                566666543  235667777666


Q ss_pred             CCCcEEecC-CceEEee
Q 039497          602 NGTPAWHPG-NQLDLGK  617 (642)
Q Consensus       602 ~~~~~~s~d-g~~~~~~  617 (642)
                      +..++|.|- .|++++.
T Consensus       261 vW~VRfn~~hdqLiLs~  277 (370)
T KOG1007|consen  261 VWAVRFNPEHDQLILSG  277 (370)
T ss_pred             EEEEEecCccceEEEec
Confidence            677777775 3555654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.85  E-value=0.0018  Score=60.75  Aligned_cols=200  Identities=9%  Similarity=0.024  Sum_probs=110.3

Q ss_pred             eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcc
Q 039497           36 EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQI  115 (642)
Q Consensus        36 ~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (642)
                      ....++|.+.+-...|+ |.|..++ ++..++...||.....=..|..... .....++...-++...-+.......   
T Consensus       183 L~~Y~GH~GSVNsikfh-~s~~L~l-TaSGD~taHIW~~av~~~vP~~~a~-~~hSsEeE~e~sDe~~~d~d~~~~s---  256 (481)
T KOG0300|consen  183 LATYTGHTGSVNSIKFH-NSGLLLL-TASGDETAHIWKAAVNWEVPSNNAP-SDHSSEEEEEHSDEHNRDTDSSEKS---  256 (481)
T ss_pred             eeeecccccceeeEEec-cccceEE-EccCCcchHHHHHhhcCcCCCCCCC-CCCCchhhhhccccccccccccccc---
Confidence            45778999999999999 9997666 6666888999985111100000000 0000000000011111111110000   


Q ss_pred             cccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-
Q 039497          116 FKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG-  194 (642)
Q Consensus       116 ~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-  194 (642)
                         -+.-.+++     ...|+.+.+......|=..|+.++.++-+.            .--+||+++|+...+...+.. 
T Consensus       257 ---D~~tiRvP-----l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR------------TAnlwDVEtge~v~~LtGHd~E  316 (481)
T KOG0300|consen  257 ---DGHTIRVP-----LMRLTGHRAVVSACDWLAGGQQMVTASWDR------------TANLWDVETGEVVNILTGHDSE  316 (481)
T ss_pred             ---CCceeeee-----eeeeeccccceEehhhhcCcceeeeeeccc------------cceeeeeccCceeccccCcchh
Confidence               00122222     245566666666677888899998887655            344789999987776654442 


Q ss_pred             --cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497          195 --WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE  272 (642)
Q Consensus       195 --~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~  272 (642)
                        ...=.|..++++++ ..+.++.||.....=.        ....+.++...+.+..|.-|-+ ++.     ++....+.
T Consensus       317 LtHcstHptQrLVvTs-SrDtTFRLWDFReaI~--------sV~VFQGHtdtVTS~vF~~dd~-vVS-----gSDDrTvK  381 (481)
T KOG0300|consen  317 LTHCSTHPTQRLVVTS-SRDTTFRLWDFREAIQ--------SVAVFQGHTDTVTSVVFNTDDR-VVS-----GSDDRTVK  381 (481)
T ss_pred             ccccccCCcceEEEEe-ccCceeEeccchhhcc--------eeeeecccccceeEEEEecCCc-eee-----cCCCceEE
Confidence              34555776777777 5677788886542211        2233344443455556654443 444     55666899


Q ss_pred             EEEe
Q 039497          273 IYDL  276 (642)
Q Consensus       273 ~~d~  276 (642)
                      +||+
T Consensus       382 vWdL  385 (481)
T KOG0300|consen  382 VWDL  385 (481)
T ss_pred             Eeee
Confidence            9998

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.84  E-value=0.00026  Score=74.21  Aligned_cols=195  Identities=10%  Similarity=0.085  Sum_probs=118.8

Q ss_pred             ceeeeeecC-CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497          375 AFYNSWSPT-EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR  453 (642)
Q Consensus       375 ~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~  453 (642)
                      ...+.|..- .+.|+.++       ..+.+.+|++..  .     .+..   ....+..++ ..+..+.|++-.-.|+..
T Consensus        90 ~~DVkW~~~~~NlIAT~s-------~nG~i~vWdlnk--~-----~rnk---~l~~f~EH~-Rs~~~ldfh~tep~iliS  151 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCS-------TNGVISVWDLNK--S-----IRNK---LLTVFNEHE-RSANKLDFHSTEPNILIS  151 (839)
T ss_pred             hhhcccccchhhhheeec-------CCCcEEEEecCc--c-----ccch---hhhHhhhhc-cceeeeeeccCCccEEEe
Confidence            456778753 34444444       378899999965  1     1211   223445555 677788999888888888


Q ss_pred             eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC-CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497          454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG-DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG  532 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  532 (642)
                      ..++|  .|-.||+...+.   ..........+..+.|+|.- .+++...+.+.        |.+||+..-..-.+....
T Consensus       152 GSQDg--~vK~~DlR~~~S---~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~--------lqlWDlRqp~r~~~k~~A  218 (839)
T KOG0269|consen  152 GSQDG--TVKCWDLRSKKS---KSTFRSNSESIRDVKFSPGYGNKFASIHDSGY--------LQLWDLRQPDRCEKKLTA  218 (839)
T ss_pred             cCCCc--eEEEEeeecccc---cccccccchhhhceeeccCCCceEEEecCCce--------EEEeeccCchhHHHHhhc
Confidence            87776  566677765543   12222334567788999954 44444444433        889999654332222234


Q ss_pred             CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEecC
Q 039497          533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHPG  610 (642)
Q Consensus       533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~d  610 (642)
                      +.+       .+..+.|+|++.+|+....++                 .|-+|+..++++..+.  .....+.-+.|-|+
T Consensus       219 H~G-------pV~c~nwhPnr~~lATGGRDK-----------------~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~  274 (839)
T KOG0269|consen  219 HNG-------PVLCLNWHPNREWLATGGRDK-----------------MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA  274 (839)
T ss_pred             ccC-------ceEEEeecCCCceeeecCCCc-----------------cEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence            555       778899999999998777554                 4445555544433222  22345678899999


Q ss_pred             CceE-EeecCCCccc
Q 039497          611 NQLD-LGKLRLEDDI  624 (642)
Q Consensus       611 g~~~-~~~~~~~~~~  624 (642)
                      .++. +++...++++
T Consensus       275 ~~~hLAtcsmv~dts  289 (839)
T KOG0269|consen  275 RSYHLATCSMVVDTS  289 (839)
T ss_pred             ccchhhhhhccccce
Confidence            8775 4454444443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=97.84  E-value=0.00087  Score=62.37  Aligned_cols=147  Identities=14%  Similarity=0.063  Sum_probs=95.0

Q ss_pred             CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC--CEEEEEecCCCCCCCCce
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG--DLIAFSSNRHNPDNVEAF  513 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG--~~l~~~~~~~~~~~~~~~  513 (642)
                      ..+..+.|-|-..-++..+.  -+..|.+||..|-+.    ......++.+..-+|||=.  ..|+....++       .
T Consensus       102 y~iss~~WyP~DtGmFtssS--FDhtlKVWDtnTlQ~----a~~F~me~~VYshamSp~a~sHcLiA~gtr~-------~  168 (397)
T KOG4283|consen  102 YAISSAIWYPIDTGMFTSSS--FDHTLKVWDTNTLQE----AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRD-------V  168 (397)
T ss_pred             eeeeeeEEeeecCceeeccc--ccceEEEeeccccee----eEEeecCceeehhhcChhhhcceEEEEecCC-------C
Confidence            34556677775444544433  345789999988774    4444556667777888843  2344444433       3


Q ss_pred             eEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497          514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR  593 (642)
Q Consensus       514 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  593 (642)
                      +|.++|+.+|...+... ++.+       .+.++.|||...+++++....+..              ++|-+....+-..
T Consensus       169 ~VrLCDi~SGs~sH~Ls-GHr~-------~vlaV~Wsp~~e~vLatgsaDg~i--------------rlWDiRrasgcf~  226 (397)
T KOG4283|consen  169 QVRLCDIASGSFSHTLS-GHRD-------GVLAVEWSPSSEWVLATGSADGAI--------------RLWDIRRASGCFR  226 (397)
T ss_pred             cEEEEeccCCcceeeec-cccC-------ceEEEEeccCceeEEEecCCCceE--------------EEEEeecccceeE
Confidence            59999999998887765 5554       678999999999998887655421              4443333333222


Q ss_pred             ec--------------cCCCCCCCCcEEecCCceEEee
Q 039497          594 RL--------------TWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       594 ~l--------------t~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      .|              +.+.+.+..++|+.||+++++.
T Consensus       227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~  264 (397)
T KOG4283|consen  227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC  264 (397)
T ss_pred             EeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence            22              2234566789999999988764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=97.82  E-value=0.0065  Score=57.24  Aligned_cols=219  Identities=15%  Similarity=0.066  Sum_probs=130.2

Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      .|.++. .+++.   +-...|.++|+.+++..++.. ...+..+..++-...++..+.       +..+++|+...    
T Consensus        61 ~F~d~~-~~~~G---~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsW-------D~~ik~wD~R~----  125 (323)
T KOG1036|consen   61 AFADES-TIVTG---GLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSW-------DKTIKFWDPRN----  125 (323)
T ss_pred             eccCCc-eEEEe---ccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEccc-------CccEEEEeccc----
Confidence            455433 34443   335789999999998877765 677888888886666666654       78899999864    


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCCcccceeEe
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPWIDTMPSWS  492 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~~~~~~~~s  492 (642)
                                 +....+......+.  ..+-.|..|++...   ..++.+||+..-..   ..+...  .......++.-
T Consensus       126 -----------~~~~~~~d~~kkVy--~~~v~g~~LvVg~~---~r~v~iyDLRn~~~---~~q~reS~lkyqtR~v~~~  186 (323)
T KOG1036|consen  126 -----------KVVVGTFDQGKKVY--CMDVSGNRLVVGTS---DRKVLIYDLRNLDE---PFQRRESSLKYQTRCVALV  186 (323)
T ss_pred             -----------cccccccccCceEE--EEeccCCEEEEeec---CceEEEEEcccccc---hhhhccccceeEEEEEEEe
Confidence                       11111111112233  33445667777442   23788899875442   122211  22334556777


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCce---EE----eeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL---RR----IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~---~~----l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                      |++.-.+..+-++.        +++=.++..+.   +.    .+.....+  .....++.+++|+|=.++++....++  
T Consensus       187 pn~eGy~~sSieGR--------VavE~~d~s~~~~skkyaFkCHr~~~~~--~~~~yPVNai~Fhp~~~tfaTgGsDG--  254 (323)
T KOG1036|consen  187 PNGEGYVVSSIEGR--------VAVEYFDDSEEAQSKKYAFKCHRLSEKD--TEIIYPVNAIAFHPIHGTFATGGSDG--  254 (323)
T ss_pred             cCCCceEEEeecce--------EEEEccCCchHHhhhceeEEeeecccCC--ceEEEEeceeEeccccceEEecCCCc--
Confidence            77766666666543        45444433310   00    00000000  00112567899999988888776665  


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEcCC-CceeeccCCCCCCCCcEEecCCceEE
Q 039497          566 MAEPVSWPNQFQPYGDLYVVKLDG-SGLRRLTWNGYENGTPAWHPGNQLDL  615 (642)
Q Consensus       566 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lt~~~~~~~~~~~s~dg~~~~  615 (642)
                                     -+-.||+.. +.+.++......+.+++|+.||..|+
T Consensus       255 ---------------~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA  290 (323)
T KOG1036|consen  255 ---------------IVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA  290 (323)
T ss_pred             ---------------eEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence                           667777765 34777777777788999999997774

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=0.018  Score=59.35  Aligned_cols=205  Identities=10%  Similarity=0.106  Sum_probs=129.4

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ....+++|++++....  ....+.++|........... ......+.++|+++.+++....      .....++.++.  
T Consensus        78 ~i~v~~~~~~vyv~~~--~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~------~~~~~vsvid~--  147 (381)
T COG3391          78 GVAVNPAGNKVYVTTG--DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAG------NGNNTVSVIDA--  147 (381)
T ss_pred             ceeeCCCCCeEEEecC--CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecc------cCCceEEEEeC--
Confidence            4477888887666442  25678888866665444433 4477889999999999988742      13445555554  


Q ss_pred             CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee-----CCCCCCccc
Q 039497          413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-----LTDGPWIDT  487 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-----l~~~~~~~~  487 (642)
                      .     ++.    ....+..+.  .....+++|+|++++.+..  ....|..+|.++...    ..     .........
T Consensus       148 ~-----t~~----~~~~~~vG~--~P~~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v----~~~~~~~~~~~~~~P~  210 (381)
T COG3391         148 A-----TNK----VTATIPVGN--TPTGVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSV----VRGSVGSLVGVGTGPA  210 (381)
T ss_pred             C-----CCe----EEEEEecCC--CcceEEECCCCCeEEEEec--CCCeEEEEeCCCcce----eccccccccccCCCCc
Confidence            2     121    222222221  2367899999999888773  445899999775442    32     111112335


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      .+.++|||++++......     ....+.++|..++............       ....+..+|+|+.++......+   
T Consensus       211 ~i~v~~~g~~~yV~~~~~-----~~~~v~~id~~~~~v~~~~~~~~~~-------~~~~v~~~p~g~~~yv~~~~~~---  275 (381)
T COG3391         211 GIAVDPDGNRVYVANDGS-----GSNNVLKIDTATGNVTATDLPVGSG-------APRGVAVDPAGKAAYVANSQGG---  275 (381)
T ss_pred             eEEECCCCCEEEEEeccC-----CCceEEEEeCCCceEEEeccccccC-------CCCceeECCCCCEEEEEecCCC---
Confidence            679999999888887654     1245899998887665542111110       1346789999998887765532   


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLR  593 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~  593 (642)
                                   .+..+|.....+.
T Consensus       276 -------------~V~vid~~~~~v~  288 (381)
T COG3391         276 -------------TVSVIDGATDRVV  288 (381)
T ss_pred             -------------eEEEEeCCCCcee
Confidence                         6788777665543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=97.80  E-value=0.0017  Score=64.12  Aligned_cols=190  Identities=15%  Similarity=0.101  Sum_probs=112.3

Q ss_pred             CccEEcCCCC-EEEEEecCCCceeEEEEECCCCC--eeE--Eee--cCCceeeeeecCCCE-EEEEEcCCCcccCCCeEE
Q 039497          333 SFPSFSPDGG-LIVFNHDFELNAGIKIAKSDGSK--RWT--LIK--DRTAFYNSWSPTEKH-VIYTSTGPIFQSERATVQ  404 (642)
Q Consensus       333 ~~~~~spdg~-~l~~~~~~~~~~~l~~~d~~~~~--~~~--l~~--~~~~~~~~~spdg~~-l~~~~~~~~~~~~~~~~~  404 (642)
                      ...+|+|..+ .++.+++.  .++|-++|+.+.+  ...  +..  ...+..+.|+|.... ++..+.       ++.++
T Consensus       190 t~l~fHPt~~~~lva~GdK--~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy-------DGtiR  260 (498)
T KOG4328|consen  190 TSLAFHPTENRKLVAVGDK--GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY-------DGTIR  260 (498)
T ss_pred             EEEEecccCcceEEEEccC--CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc-------Cceee
Confidence            3568899876 66666543  4556666664222  111  111  456889999996644 444443       78888


Q ss_pred             EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                      +.+++.  .      -.+   ....+.... .......|+.+...++|..+- |  .+-++|..++..  ....+.-+..
T Consensus       261 ~~D~~~--~------i~e---~v~s~~~d~-~~fs~~d~~~e~~~vl~~~~~-G--~f~~iD~R~~~s--~~~~~~lh~k  323 (498)
T KOG4328|consen  261 LQDFEG--N------ISE---EVLSLDTDN-IWFSSLDFSAESRSVLFGDNV-G--NFNVIDLRTDGS--EYENLRLHKK  323 (498)
T ss_pred             eeeecc--h------hhH---HHhhcCccc-eeeeeccccCCCccEEEeecc-c--ceEEEEeecCCc--cchhhhhhhc
Confidence            888765  1      110   111111122 345567788888778877643 2  555666655442  1344554555


Q ss_pred             cccceeEecCCCEEEEEec-CCCCCCCCceeEEEEeCCCC--ceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497          485 IDTMPSWSPKGDLIAFSSN-RHNPDNVEAFSLYVIKPDGS--GLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~-~~~~~~~~~~~l~~~d~~~~--~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      .+.++++.|--.+++.++. +..        +.+||+..-  +.. .|....+..       .+.++.|||+|-.|+.+.
T Consensus       324 KI~sv~~NP~~p~~laT~s~D~T--------~kIWD~R~l~~K~sp~lst~~Hrr-------sV~sAyFSPs~gtl~TT~  388 (498)
T KOG4328|consen  324 KITSVALNPVCPWFLATASLDQT--------AKIWDLRQLRGKASPFLSTLPHRR-------SVNSAYFSPSGGTLLTTC  388 (498)
T ss_pred             ccceeecCCCCchheeecccCcc--------eeeeehhhhcCCCCcceecccccc-------eeeeeEEcCCCCceEeec
Confidence            7888999997777555544 433        778887642  221 233333333       678899999999988887


Q ss_pred             ecC
Q 039497          561 NLG  563 (642)
Q Consensus       561 ~~~  563 (642)
                      .+.
T Consensus       389 ~D~  391 (498)
T KOG4328|consen  389 QDN  391 (498)
T ss_pred             cCC
Confidence            665

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=97.78  E-value=0.00068  Score=65.22  Aligned_cols=159  Identities=16%  Similarity=0.175  Sum_probs=100.1

Q ss_pred             CCccEEcC--CCCEEEEEecCCCceeEEEEECCCCCeeE----Eee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497          332 GSFPSFSP--DGGLIVFNHDFELNAGIKIAKSDGSKRWT----LIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ  404 (642)
Q Consensus       332 ~~~~~~sp--dg~~l~~~~~~~~~~~l~~~d~~~~~~~~----l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  404 (642)
                      +..+.|||  .|+ ++.   ++....|+++...++....    ++. ...+..+.|||..+-+++...      -++.++
T Consensus       214 Gy~LdWSp~~~g~-Lls---GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS------~DgsIr  283 (440)
T KOG0302|consen  214 GYGLDWSPIKTGR-LLS---GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS------CDGSIR  283 (440)
T ss_pred             ceeeecccccccc-ccc---CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee------cCceEE
Confidence            35678998  332 221   1344667777766654322    211 567889999999988888773      489999


Q ss_pred             EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                      ||++..  .      .+    +...++......+..+.|+.+-..|++. .++|  .+.+||+..=+...++..+..+..
T Consensus       284 IWDiRs--~------~~----~~~~~~kAh~sDVNVISWnr~~~lLasG-~DdG--t~~iwDLR~~~~~~pVA~fk~Hk~  348 (440)
T KOG0302|consen  284 IWDIRS--G------PK----KAAVSTKAHNSDVNVISWNRREPLLASG-GDDG--TLSIWDLRQFKSGQPVATFKYHKA  348 (440)
T ss_pred             EEEecC--C------Cc----cceeEeeccCCceeeEEccCCcceeeec-CCCc--eEEEEEhhhccCCCcceeEEeccC
Confidence            999987  2      11    3444444443677788999877744443 3444  566677653221112566777778


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      .+.++.|+|....++..+...       .+|.+||+.-
T Consensus       349 pItsieW~p~e~s~iaasg~D-------~QitiWDlsv  379 (440)
T KOG0302|consen  349 PITSIEWHPHEDSVIAASGED-------NQITIWDLSV  379 (440)
T ss_pred             CeeEEEeccccCceEEeccCC-------CcEEEEEeec
Confidence            889999999665544444332       2489999864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.76  E-value=0.0078  Score=56.98  Aligned_cols=173  Identities=11%  Similarity=0.153  Sum_probs=104.5

Q ss_pred             eeEEEEE-CCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497          354 AGIKIAK-SDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK  432 (642)
Q Consensus       354 ~~l~~~d-~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (642)
                      +.|.+|| .+......+.....+..+.+++|  +|+++.        ...+.+|....  +++          ....+..
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl--------~~~I~VytF~~--n~k----------~l~~~et  132 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL--------ENKIYVYTFPD--NPK----------LLHVIET  132 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe--------cCeEEEEEcCC--Chh----------heeeeec
Confidence            4556666 22223333444777888888764  566665        56778887754  211          2222211


Q ss_pred             cC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497          433 EE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE  511 (642)
Q Consensus       433 ~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~  511 (642)
                      -. ......+.-+-+-..|+|-+.+.|  +|-++|+..-+. .....+..+...+..++.+-+|..|+.++..++     
T Consensus       133 ~~NPkGlC~~~~~~~k~~LafPg~k~G--qvQi~dL~~~~~-~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT-----  204 (346)
T KOG2111|consen  133 RSNPKGLCSLCPTSNKSLLAFPGFKTG--QVQIVDLASTKP-NAPSIINAHDSDIACVALNLQGTLVATASTKGT-----  204 (346)
T ss_pred             ccCCCceEeecCCCCceEEEcCCCccc--eEEEEEhhhcCc-CCceEEEcccCceeEEEEcCCccEEEEeccCcE-----
Confidence            11 011211222223456777666555  677777764331 012556667777788899999999999998775     


Q ss_pred             ceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          512 AFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       512 ~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                        -|.++|..+|+.. .+.. +.+.      -.+..++||||+.+|+..++.+..
T Consensus       205 --LIRIFdt~~g~~l~E~RR-G~d~------A~iy~iaFSp~~s~LavsSdKgTl  250 (346)
T KOG2111|consen  205 --LIRIFDTEDGTLLQELRR-GVDR------ADIYCIAFSPNSSWLAVSSDKGTL  250 (346)
T ss_pred             --EEEEEEcCCCcEeeeeec-CCch------heEEEEEeCCCccEEEEEcCCCeE
Confidence              3788898776543 3333 3222      256789999999999999987753

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.73  E-value=0.011  Score=55.20  Aligned_cols=219  Identities=14%  Similarity=0.119  Sum_probs=128.3

Q ss_pred             CccEEcCCCCE-EEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          333 SFPSFSPDGGL-IVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       333 ~~~~~spdg~~-l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      ..+.++|.-.+ ++|... - ..-.+++|..+....++..    .....+-.|||||++||.+.++  +....+-+-+|+
T Consensus        71 Hgi~~~p~~~ravafARr-P-Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd--fd~~rGViGvYd  146 (366)
T COG3490          71 HGIAFHPALPRAVAFARR-P-GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND--FDPNRGVIGVYD  146 (366)
T ss_pred             CCeecCCCCcceEEEEec-C-CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC--CCCCCceEEEEe
Confidence            34577776554 445442 2 2455667887776555443    2334566899999988877654  244566777888


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC------C---------CceeEEEEECCCCcc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR------S---------GHKNLFVLDAVNGEF  472 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~------~---------g~~~l~~~d~~~g~~  472 (642)
                      ...        +-.    ..-.+.... -..-.+.|++||+.|+.+...      -         -...|.++|..+|+.
T Consensus       147 ~r~--------~fq----rvgE~~t~G-iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~l  213 (366)
T COG3490         147 ARE--------GFQ----RVGEFSTHG-IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL  213 (366)
T ss_pred             ccc--------ccc----eecccccCC-cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccch
Confidence            764        110    222233332 234458999999999987641      1         145788888777876


Q ss_pred             ccceeeCCC----CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-----CCCCCCccccc
Q 039497          473 NGDIRQLTD----GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-----PEGSGDVDRER  543 (642)
Q Consensus       473 ~~~~~~l~~----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-----~~~~~~~~~~~  543 (642)
                         +.+.+-    ....+.++...+||+ ++|...-..+ ..+..-|.-.-..++.++.+....     ...       +
T Consensus       214 ---iekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~-~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an-------Y  281 (366)
T COG3490         214 ---IEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGP-RNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN-------Y  281 (366)
T ss_pred             ---hhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCC-CccCCcceeeccCCCcCcccCCCHHHHHHHHh-------h
Confidence               444321    123456778889997 5555443221 112233444444444444332210     111       4


Q ss_pred             ccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497          544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       544 ~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                      +.+++...+-.+++.++..++                ....||.+++.+....
T Consensus       282 igsiA~n~~~glV~lTSP~GN----------------~~vi~da~tG~vv~~a  318 (366)
T COG3490         282 IGSIAANRRDGLVALTSPRGN----------------RAVIWDAATGAVVSEA  318 (366)
T ss_pred             hhheeecccCCeEEEecCCCC----------------eEEEEEcCCCcEEecc
Confidence            557777777788888887765                5677899998865443

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=97.70  E-value=0.045  Score=57.80  Aligned_cols=220  Identities=15%  Similarity=0.137  Sum_probs=132.1

Q ss_pred             ccEEcCCCCEEEEEecC--CCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDF--ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~--~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..+.|||++.+++..+.  +....|.+.|+.+++............++|.+|++.++|+...+    .....++|.... 
T Consensus       133 ~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~----~~rp~kv~~h~~-  207 (682)
T COG1770         133 AASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDE----NHRPDKVWRHRL-  207 (682)
T ss_pred             eeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcC----CCCcceEEEEec-
Confidence            55789999999997653  44567888999988755544455677899999999999998642    223445666555 


Q ss_pred             cCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                       .      ...  ..-+.+.... ......+.-|...++|+.........++++++.+....  ..+.+..... .....
T Consensus       208 -g------t~~--~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~--~p~vv~pr~~-g~eY~  275 (682)
T COG1770         208 -G------TPG--SSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEA--EPKVVLPREN-GVEYS  275 (682)
T ss_pred             -C------CCC--CcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCC--ceEEEEEcCC-CcEEe
Confidence             1      100  0222232222 12223344566788888877666777999999886553  1233332221 11222


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeC--CCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKP--DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE  568 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~  568 (642)
                      ...-|.++++.++...    ....|+...+  .....+.+......         ..--.|+.-..+|+....+++..  
T Consensus       276 ~eh~~d~f~i~sN~~g----knf~l~~ap~~~~~~~w~~~I~h~~~---------~~l~~~~~f~~~lVl~eR~~glp--  340 (682)
T COG1770         276 VEHGGDRFYILSNADG----KNFKLVRAPVSADKSNWRELIPHRED---------VRLEGVDLFADHLVLLERQEGLP--  340 (682)
T ss_pred             eeecCcEEEEEecCCC----cceEEEEccCCCChhcCeeeeccCCC---------ceeeeeeeeccEEEEEecccCCc--
Confidence            3344777777777653    4566776655  11233333332221         23345666677888887776643  


Q ss_pred             CCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497          569 PVSWPNQFQPYGDLYVVKLDGSGLRRLTW  597 (642)
Q Consensus       569 ~~~~~~~~~~~~~l~~~~~~~~~~~~lt~  597 (642)
                                  .|++.+...++...|..
T Consensus       341 ------------~v~v~~~~~~~~~~i~f  357 (682)
T COG1770         341 ------------RVVVRDRKTGEERGIAF  357 (682)
T ss_pred             ------------eEEEEecCCCceeeEEe
Confidence                        88888887666555554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.68  E-value=0.094  Score=54.26  Aligned_cols=103  Identities=12%  Similarity=0.177  Sum_probs=57.7

Q ss_pred             ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceE-ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCee
Q 039497           95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFT-RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNT  173 (642)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~  173 (642)
                      .|.+.++.+++....          +.|+.++..+|+.. +..........|.+  ++..|++...+.            
T Consensus        60 ~p~v~~~~v~v~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g------------  115 (377)
T TIGR03300        60 QPAVAGGKVYAADAD----------GTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKG------------  115 (377)
T ss_pred             ceEEECCEEEEECCC----------CeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCC------------
Confidence            456677777775543          26899998877654 22212222233443  566776654333            


Q ss_pred             eEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEecCCCceEEEEEecCCCc
Q 039497          174 DIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL  226 (642)
Q Consensus       174 ~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~  226 (642)
                      .|+.++.++|+..--....+   ..|.. .++.+++..  .+|  .|+.+|..+|.
T Consensus       116 ~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~--~~g--~l~a~d~~tG~  166 (377)
T TIGR03300       116 EVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRT--NDG--RLTALDAATGE  166 (377)
T ss_pred             EEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEEC--CCC--eEEEEEcCCCc
Confidence            68889988887543222111   12333 234444432  244  78889988773

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.66  E-value=0.0018  Score=66.86  Aligned_cols=224  Identities=13%  Similarity=0.065  Sum_probs=125.8

Q ss_pred             cCCCCEEEEEecCCCceeEEEEECCCCCeeE--Eee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWT--LIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~--l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ++.+.+.+|.+.+++.-.+|-.+-+.++...  +..    ...+.++...-+|+.|+-++.       +..+.+|.... 
T Consensus        33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss-------DtTVK~W~~~~-  104 (735)
T KOG0308|consen   33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS-------DTTVKVWNAHK-  104 (735)
T ss_pred             cCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC-------CceEEEeeccc-
Confidence            4444455666655554444444444443211  111    334566677778888877764       78999999866 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEE-CCCCCeEEEEeCCCCceeEEEEECCCCcc--ccceeeC-----C-CC
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSC-SPDGKFLVFRSGRSGHKNLFVLDAVNGEF--NGDIRQL-----T-DG  482 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-SpDg~~l~~~~~~~g~~~l~~~d~~~g~~--~~~~~~l-----~-~~  482 (642)
                       +      +   ......|..+. .++..+++ -++. .++.+..  -+.+|++||+.+|..  +.....+     . ..
T Consensus       105 -~------~---~~c~stir~H~-DYVkcla~~ak~~-~lvaSgG--LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~  170 (735)
T KOG0308|consen  105 -D------N---TFCMSTIRTHK-DYVKCLAYIAKNN-ELVASGG--LDRKIFLWDINTGTATLVASFNNVTVNSLGSGP  170 (735)
T ss_pred             -C------c---chhHhhhhccc-chheeeeecccCc-eeEEecC--CCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence             2      1   01556666666 67777777 4444 4444433  245899999998841  0000111     1 11


Q ss_pred             CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      ...+.+++..+.|. ++..+...       ..|.+||..+.+...-.. ++..       ++..+..++||++++.++.+
T Consensus       171 k~siYSLA~N~t~t-~ivsGgte-------k~lr~wDprt~~kimkLr-GHTd-------NVr~ll~~dDGt~~ls~sSD  234 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGT-IIVSGGTE-------KDLRLWDPRTCKKIMKLR-GHTD-------NVRVLLVNDDGTRLLSASSD  234 (735)
T ss_pred             ccceeeeecCCcce-EEEecCcc-------cceEEeccccccceeeee-cccc-------ceEEEEEcCCCCeEeecCCC
Confidence            12344556667774 33333322       238999998765543333 5554       68889999999999999888


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEe
Q 039497          563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLG  616 (642)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~  616 (642)
                      +                 -|-+|++.-.. +..+..+...+.++.-+|+=.++.+
T Consensus       235 g-----------------tIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs  272 (735)
T KOG0308|consen  235 G-----------------TIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS  272 (735)
T ss_pred             c-----------------eEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence            7                 56666765543 2223333322334444444444443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.63  E-value=0.016  Score=59.17  Aligned_cols=151  Identities=11%  Similarity=0.014  Sum_probs=86.9

Q ss_pred             CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee---CCCCCCc-----ccceeEecCCCEEEEEecCCCC
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ---LTDGPWI-----DTMPSWSPKGDLIAFSSNRHNP  507 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~---l~~~~~~-----~~~~~~spdG~~l~~~~~~~~~  507 (642)
                      +.+..+..++-...|++... +  ..+-.||..+...++.+..   +...++.     ++.+.|+-||-.+++....+. 
T Consensus       176 ~~lN~v~in~~hgLla~Gt~-~--g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-  251 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTE-D--GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-  251 (703)
T ss_pred             ccceeeeecCccceEEeccc-C--ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-
Confidence            45566777776655555442 2  3566777766554111111   2223333     667799988988988887765 


Q ss_pred             CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC--CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEE
Q 039497          508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD--GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV  585 (642)
Q Consensus       508 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  585 (642)
                             +++||+...++-.+...+...       ++..+.|-+.  +..|+ +.+..                 -|-.|
T Consensus       252 -------v~iyDLRa~~pl~~kdh~~e~-------pi~~l~~~~~~~q~~v~-S~Dk~-----------------~~kiW  299 (703)
T KOG2321|consen  252 -------VLIYDLRASKPLLVKDHGYEL-------PIKKLDWQDTDQQNKVV-SMDKR-----------------ILKIW  299 (703)
T ss_pred             -------EEEEEcccCCceeecccCCcc-------ceeeecccccCCCceEE-ecchH-----------------Hhhhc
Confidence                   999999988776665443333       4455666443  33333 33221                 34455


Q ss_pred             EcCCCceeeccCCCCCCCCcEEecCC-ceEEeecCCCc
Q 039497          586 KLDGSGLRRLTWNGYENGTPAWHPGN-QLDLGKLRLED  622 (642)
Q Consensus       586 ~~~~~~~~~lt~~~~~~~~~~~s~dg-~~~~~~~~~~~  622 (642)
                      +...|++.........+.+..+-|++ .+|++..+..+
T Consensus       300 d~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m  337 (703)
T KOG2321|consen  300 DECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKM  337 (703)
T ss_pred             ccccCCceeeccccCCcCceeeecCCceEEEecCCCcc
Confidence            76666544333333345677777875 66666655444

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.58  E-value=0.00038  Score=66.05  Aligned_cols=189  Identities=13%  Similarity=0.165  Sum_probs=119.5

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      +.+.-|.+ ++..+  .....|.++|.++++......  -..+..+.|+.  .+++.++.       +..+.+|++... 
T Consensus       241 LCLqyd~r-viisG--SSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSk-------DrsiaVWdm~sp-  307 (499)
T KOG0281|consen  241 LCLQYDER-VIVSG--SSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSK-------DRSIAVWDMASP-  307 (499)
T ss_pred             Eeeeccce-EEEec--CCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecC-------CceeEEEeccCc-
Confidence            34444555 33322  335678888998887644332  45567788863  45665553       678999999761 


Q ss_pred             CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497          413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS  492 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s  492 (642)
                            ...   ...+.|..+. ..+..+.|  |.|+|+.++   |+..|..|++.+++.   ++.|..+...+...++-
T Consensus       308 ------s~i---t~rrVLvGHr-AaVNvVdf--d~kyIVsAS---gDRTikvW~~st~ef---vRtl~gHkRGIAClQYr  369 (499)
T KOG0281|consen  308 ------TDI---TLRRVLVGHR-AAVNVVDF--DDKYIVSAS---GDRTIKVWSTSTCEF---VRTLNGHKRGIACLQYR  369 (499)
T ss_pred             ------hHH---HHHHHHhhhh-hheeeecc--ccceEEEec---CCceEEEEeccceee---ehhhhcccccceehhcc
Confidence                  110   0112233333 44444555  567888777   566899999999998   77787776665555654


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCC
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW  572 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~  572 (642)
                        |+.++-.+.+..        |.+||+..|..-++.. +++.       -+..+.|  |.++|+-.+-++         
T Consensus       370 --~rlvVSGSSDnt--------IRlwdi~~G~cLRvLe-GHEe-------LvRciRF--d~krIVSGaYDG---------  420 (499)
T KOG0281|consen  370 --DRLVVSGSSDNT--------IRLWDIECGACLRVLE-GHEE-------LVRCIRF--DNKRIVSGAYDG---------  420 (499)
T ss_pred             --CeEEEecCCCce--------EEEEeccccHHHHHHh-chHH-------hhhheee--cCceeeeccccc---------
Confidence              776665555554        9999998887655544 4444       4556677  678887766554         


Q ss_pred             CCCCCCCCcEEEEEcCCCc
Q 039497          573 PNQFQPYGDLYVVKLDGSG  591 (642)
Q Consensus       573 ~~~~~~~~~l~~~~~~~~~  591 (642)
                              .|-+||+..+.
T Consensus       421 --------kikvWdl~aal  431 (499)
T KOG0281|consen  421 --------KIKVWDLQAAL  431 (499)
T ss_pred             --------eEEEEeccccc
Confidence                    67777876543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.56  E-value=0.00014  Score=47.10  Aligned_cols=35  Identities=40%  Similarity=0.802  Sum_probs=27.3

Q ss_pred             EccccCCCCccCcEECCCCCeEEEEeCCC--CceeEEE
Q 039497          429 ILTKEETGNNAFPSCSPDGKFLVFRSGRS--GHKNLFV  464 (642)
Q Consensus       429 ~l~~~~~~~~~~~~~SpDg~~l~~~~~~~--g~~~l~~  464 (642)
                      +++... .....++|||||++|+|.+.+.  |..+||+
T Consensus         3 ~~t~~~-~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~   39 (39)
T PF07676_consen    3 QLTNSP-GDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV   39 (39)
T ss_dssp             EES-SS-SSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred             CcccCC-ccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence            445555 6778899999999999999998  8888875

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.52  E-value=0.015  Score=54.79  Aligned_cols=177  Identities=16%  Similarity=0.140  Sum_probs=112.0

Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR  453 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~  453 (642)
                      .+....|-.-|++++..+.       +....+|+++.        +.     ....|+.+. ....+..-.|.. .|+.+
T Consensus       274 vV~a~dWL~gg~Q~vTaSW-------DRTAnlwDVEt--------ge-----~v~~LtGHd-~ELtHcstHptQ-rLVvT  331 (481)
T KOG0300|consen  274 VVSACDWLAGGQQMVTASW-------DRTANLWDVET--------GE-----VVNILTGHD-SELTHCSTHPTQ-RLVVT  331 (481)
T ss_pred             ceEehhhhcCcceeeeeec-------cccceeeeecc--------Cc-----eeccccCcc-hhccccccCCcc-eEEEE
Confidence            3455678888898888875       56778999987        33     566777776 667777777765 56666


Q ss_pred             eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497          454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP  533 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  533 (642)
                      +.++.  ...+||....-.  .+..+..+...+.+..|.-|.+ ++-.+++..        |.+||+..-....-+. -.
T Consensus       332 sSrDt--TFRLWDFReaI~--sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrT--------vKvWdLrNMRsplATI-Rt  397 (481)
T KOG0300|consen  332 SSRDT--TFRLWDFREAIQ--SVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRT--------VKVWDLRNMRSPLATI-RT  397 (481)
T ss_pred             eccCc--eeEeccchhhcc--eeeeecccccceeEEEEecCCc-eeecCCCce--------EEEeeeccccCcceee-ec
Confidence            66655  445566542111  0233344555678889998776 555554443        8999997654332221 11


Q ss_pred             CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC-----CCCCCCCcEEe
Q 039497          534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW-----NGYENGTPAWH  608 (642)
Q Consensus       534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~-----~~~~~~~~~~s  608 (642)
                      ..       .+..++.|.-+..|++-.+                 +.+|-++|++|..+.+|..     +...+...+|+
T Consensus       398 dS-------~~NRvavs~g~~iIAiPhD-----------------NRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~  453 (481)
T KOG0300|consen  398 DS-------PANRVAVSKGHPIIAIPHD-----------------NRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWL  453 (481)
T ss_pred             CC-------ccceeEeecCCceEEeccC-----------------CceEEEEecCCCccccCCcccccccceeeeeeecc
Confidence            11       3466788877776655432                 2378888999998888874     23445666776


Q ss_pred             cC
Q 039497          609 PG  610 (642)
Q Consensus       609 ~d  610 (642)
                      .+
T Consensus       454 ee  455 (481)
T KOG0300|consen  454 EE  455 (481)
T ss_pred             cc
Confidence            54

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.52  E-value=0.00021  Score=74.22  Aligned_cols=181  Identities=14%  Similarity=0.160  Sum_probs=118.3

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE-Eee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT-LIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ..+.|+++...|+-.   ...+.|-++|++..+..+ |+- ...+..+.|+|-|.+.+-.+       .+.++.+|++..
T Consensus        74 eSl~f~~~E~Llaag---sasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gS-------tdtd~~iwD~Rk  143 (825)
T KOG0267|consen   74 ESLTFDTSERLLAAG---SASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGS-------TDTDLKIWDIRK  143 (825)
T ss_pred             eeeecCcchhhhccc---ccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccc-------ccccceehhhhc
Confidence            455677777655443   234578888998766443 322 44567788999988775444       377889999875


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                        .      |     .......+. +.+..+.|+|||+|++-...   +..+-+||+..|+.   +..+..+.+.+..+.
T Consensus       144 --~------G-----c~~~~~s~~-~vv~~l~lsP~Gr~v~~g~e---d~tvki~d~~agk~---~~ef~~~e~~v~sle  203 (825)
T KOG0267|consen  144 --K------G-----CSHTYKSHT-RVVDVLRLSPDGRWVASGGE---DNTVKIWDLTAGKL---SKEFKSHEGKVQSLE  203 (825)
T ss_pred             --c------C-----ceeeecCCc-ceeEEEeecCCCceeeccCC---cceeeeeccccccc---ccccccccccccccc
Confidence              2      4     444444444 66778899999999886653   34788999988886   666666667777778


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT  559 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~  559 (642)
                      |+|..-.++-.+.+..        +..||+++  ...+...+.+.      ..+....|+|||+.++-.
T Consensus       204 ~hp~e~Lla~Gs~d~t--------v~f~dlet--fe~I~s~~~~~------~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  204 FHPLEVLLAPGSSDRT--------VRFWDLET--FEVISSGKPET------DGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             cCchhhhhccCCCCce--------eeeeccce--eEEeeccCCcc------CCceeeeecCCceeeecC
Confidence            8887644444444433        78888753  33333322111      145678999999866543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=97.48  E-value=0.046  Score=51.25  Aligned_cols=189  Identities=11%  Similarity=0.126  Sum_probs=111.9

Q ss_pred             ccEEcCCC-CEEEEEecCCCceeEEEEECCCC----CeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDG-GLIVFNHDFELNAGIKIAKSDGS----KRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg-~~l~~~~~~~~~~~l~~~d~~~~----~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .+.|..-. ++|...+ -+....||  |++.+    ..++|.. +..+++++|+..+..++...      ..++.+++++
T Consensus       155 SFDWne~dp~~igtSS-iDTTCTiW--die~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv------gaDGSvRmFD  225 (364)
T KOG0290|consen  155 SFDWNEVDPNLIGTSS-IDTTCTIW--DIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV------GADGSVRMFD  225 (364)
T ss_pred             ccccccCCcceeEeec-ccCeEEEE--EEeeccccceeeEEEecCcceeEEEeccCccceEEEe------cCCCcEEEEE
Confidence            44665433 4444333 24444555  55544    2455554 88899999999888776665      4588999999


Q ss_pred             EEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCC-CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPD-GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                      +..  .      .     ....+-..+  ......++|++. -++++....  +..+|.++|+.--.  .++..|..+..
T Consensus       226 LR~--l------e-----HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~--dS~~V~iLDiR~P~--tpva~L~~H~a  288 (364)
T KOG0290|consen  226 LRS--L------E-----HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM--DSNKVVILDIRVPC--TPVARLRNHQA  288 (364)
T ss_pred             ecc--c------c-----cceEEecCCCCCCcceeeccCcCCchHHhhhhc--CCceEEEEEecCCC--cceehhhcCcc
Confidence            865  1      1     112221111  012333556553 344443332  34478888887433  22677888888


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce----EEeeecCCCCCCCcccccccceEEcC-CCCEEEEE
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL----RRIHVAGPEGSGDVDRERINHVCFSA-DGEWLLFT  559 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~S~-Dg~~l~~~  559 (642)
                      .++.++|.|..+.-+.+..+.       .+..+||+..--.    .++......+       .+..+.|++ .+.+|+..
T Consensus       289 ~VNgIaWaPhS~~hictaGDD-------~qaliWDl~q~~~~~~~dPilay~a~~-------EVNqi~Ws~~~~Dwiai~  354 (364)
T KOG0290|consen  289 SVNGIAWAPHSSSHICTAGDD-------CQALIWDLQQMPRENGEDPILAYTAGG-------EVNQIQWSSSQPDWIAIC  354 (364)
T ss_pred             cccceEecCCCCceeeecCCc-------ceEEEEecccccccCCCCchhhhhccc-------eeeeeeecccCCCEEEEE
Confidence            999999999876666665543       3588899865322    1122112233       678899984 56788777


Q ss_pred             Eec
Q 039497          560 ANL  562 (642)
Q Consensus       560 ~~~  562 (642)
                      .+.
T Consensus       355 ~~k  357 (364)
T KOG0290|consen  355 FGK  357 (364)
T ss_pred             ecC
Confidence            654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=97.45  E-value=0.0027  Score=61.30  Aligned_cols=142  Identities=17%  Similarity=0.251  Sum_probs=90.8

Q ss_pred             CCccCcEECC--CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497          436 GNNAFPSCSP--DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF  513 (642)
Q Consensus       436 ~~~~~~~~Sp--Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~  513 (642)
                      ..-+.+.|||  .|+. +  + .+-...|++|...+|........++.+...+..++|||.-+.++++.....       
T Consensus       212 ~EGy~LdWSp~~~g~L-l--s-GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg-------  280 (440)
T KOG0302|consen  212 GEGYGLDWSPIKTGRL-L--S-GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG-------  280 (440)
T ss_pred             ccceeeeccccccccc-c--c-CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc-------
Confidence            3445678998  2321 1  1 113447888888888752223445666677888999998887777766553       


Q ss_pred             eEEEEeCCCCce-EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC---C
Q 039497          514 SLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD---G  589 (642)
Q Consensus       514 ~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~  589 (642)
                      .|.+||+..+.. ..+....+++       .++.+.|+-+-..|++...++                 .+-+||+.   .
T Consensus       281 sIrIWDiRs~~~~~~~~~kAh~s-------DVNVISWnr~~~lLasG~DdG-----------------t~~iwDLR~~~~  336 (440)
T KOG0302|consen  281 SIRIWDIRSGPKKAAVSTKAHNS-------DVNVISWNRREPLLASGGDDG-----------------TLSIWDLRQFKS  336 (440)
T ss_pred             eEEEEEecCCCccceeEeeccCC-------ceeeEEccCCcceeeecCCCc-----------------eEEEEEhhhccC
Confidence            288899877632 2333334444       578899998888666655554                 45555654   2


Q ss_pred             Cc-eeeccCCCCCCCCcEEecCCc
Q 039497          590 SG-LRRLTWNGYENGTPAWHPGNQ  612 (642)
Q Consensus       590 ~~-~~~lt~~~~~~~~~~~s~dg~  612 (642)
                      ++ +..+..+...+.++.|+|...
T Consensus       337 ~~pVA~fk~Hk~pItsieW~p~e~  360 (440)
T KOG0302|consen  337 GQPVATFKYHKAPITSIEWHPHED  360 (440)
T ss_pred             CCcceeEEeccCCeeEEEeccccC
Confidence            33 345666777889999998653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.43  E-value=0.032  Score=54.20  Aligned_cols=233  Identities=12%  Similarity=0.089  Sum_probs=125.5

Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .|.- |++.+|..  ....++.+-|+++.+..-+..    .+.++.+.-+|..+.++.++.       .+.+.+|++...
T Consensus       112 ~F~~-~N~~~~SG--~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-------~~~V~~~D~Rd~  181 (609)
T KOG4227|consen  112 EFDL-ENRFLYSG--ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR-------AKLVSFIDNRDR  181 (609)
T ss_pred             EEcc-CCeeEecC--CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEec-------CceEEEEeccCC
Confidence            4433 44555644  335677778888877655544    346888888998888877764       677888888651


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc--cceeeCCCCCCcccce
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN--GDIRQLTDGPWIDTMP  489 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--~~~~~l~~~~~~~~~~  489 (642)
                      .+     -+     .+..+.... .......|.|-.-.|+.+.+..+...||-.-......-  +.-.-|..........
T Consensus       182 ~~-----~~-----~~~~~AN~~-~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~  250 (609)
T KOG4227|consen  182 QN-----PI-----SLVLPANSG-KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS  250 (609)
T ss_pred             CC-----CC-----ceeeecCCC-ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence            11     11     333334433 34456788888777776666555555554332211100  0001122222223567


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE  568 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~  568 (642)
                      .|+|.|+.++......-        -..+|+-+...-.+... +.++-|  .-+.+.+..|-.|-. |+..+..      
T Consensus       251 ~~~~~G~Q~msiRR~~~--------P~~~D~~S~R~~V~k~D~N~~GY~--N~~T~KS~~F~~D~~-v~tGSD~------  313 (609)
T KOG4227|consen  251 LWSPSGNQFMSIRRGKC--------PLYFDFISQRCFVLKSDHNPNGYC--NIKTIKSMTFIDDYT-VATGSDH------  313 (609)
T ss_pred             eeCCCCCeehhhhccCC--------CEEeeeecccceeEeccCCCCcce--eeeeeeeeeeeccee-eeccCcc------
Confidence            89999998876655432        24566654333333322 111200  001234566655533 4433332      


Q ss_pred             CCCCCCCCCCCCcEEEEEcC----C--------------------CceeeccCCCCCCCCcEEecCCceEEee
Q 039497          569 PVSWPNQFQPYGDLYVVKLD----G--------------------SGLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       569 ~~~~~~~~~~~~~l~~~~~~----~--------------------~~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                                 +.||.|.+.    .                    ++++.|..+......+.|+|-..+|+++
T Consensus       314 -----------~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SS  375 (609)
T KOG4227|consen  314 -----------WGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSS  375 (609)
T ss_pred             -----------cceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEecc
Confidence                       245555431    1                    1234455555566788999988888775

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.42  E-value=0.016  Score=52.72  Aligned_cols=139  Identities=11%  Similarity=0.059  Sum_probs=82.0

Q ss_pred             CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE-ecCCCEEEEEecCCCCCCCCceeE
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW-SPKGDLIAFSSNRHNPDNVEAFSL  515 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~l  515 (642)
                      .+..+.+-|....|+++.   |+..+|-+|+++|+.   .+.+..+..++..++- +..+. |+..+.++.        +
T Consensus       116 eINam~ldP~enSi~~Ag---GD~~~y~~dlE~G~i---~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGt--------v  180 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAG---GDGVIYQVDLEDGRI---QREYRGHTDYVHSVVGRNANGQ-ILSGAEDGT--------V  180 (325)
T ss_pred             ccceeEeccCCCcEEEec---CCeEEEEEEecCCEE---EEEEcCCcceeeeeeecccCcc-eeecCCCcc--------E
Confidence            345567788888898887   677999999999996   4455556556665554 44554 555555554        8


Q ss_pred             EEEeCCCCceEEeeecCCCCCCCccccccc--ceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497          516 YVIKPDGSGLRRIHVAGPEGSGDVDRERIN--HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR  593 (642)
Q Consensus       516 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  593 (642)
                      .+||.++++..........  .++-|+...  -.+..-+..+|+-...                  ..+-+|++...+.+
T Consensus       181 RvWd~kt~k~v~~ie~yk~--~~~lRp~~g~wigala~~edWlvCGgG------------------p~lslwhLrsse~t  240 (325)
T KOG0649|consen  181 RVWDTKTQKHVSMIEPYKN--PNLLRPDWGKWIGALAVNEDWLVCGGG------------------PKLSLWHLRSSEST  240 (325)
T ss_pred             EEEeccccceeEEeccccC--hhhcCcccCceeEEEeccCceEEecCC------------------CceeEEeccCCCce
Confidence            9999988876655432111  011111111  1233345555544322                  16777788887766


Q ss_pred             eccCCCCCCCCcEEecC
Q 039497          594 RLTWNGYENGTPAWHPG  610 (642)
Q Consensus       594 ~lt~~~~~~~~~~~s~d  610 (642)
                      ++-.-+.....+.|-.|
T Consensus       241 ~vfpipa~v~~v~F~~d  257 (325)
T KOG0649|consen  241 CVFPIPARVHLVDFVDD  257 (325)
T ss_pred             EEEecccceeEeeeecc
Confidence            66554444444445443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.40  E-value=0.018  Score=58.89  Aligned_cols=221  Identities=14%  Similarity=0.131  Sum_probs=128.7

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ..+..||||+++.-++  .-..+|.++|+..-....-..  ...+.-...|-|=.++++...       +..+.+...  
T Consensus        55 t~ik~s~DGqY~lAtG--~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~-------DR~IefHak--  123 (703)
T KOG2321|consen   55 TRIKVSPDGQYLLATG--TYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQN-------DRTIEFHAK--  123 (703)
T ss_pred             ceeEecCCCcEEEEec--ccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeec-------Cceeeehhh--
Confidence            3567899999887754  336788888887654333222  222333344555566666653       223332221  


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                              .|-.   -..++.... .....-.||-   -|++...   ...||++++..|..   +..+......++.+.
T Consensus       124 --------~G~h---y~~RIP~~G-RDm~y~~~sc---Dly~~gs---g~evYRlNLEqGrf---L~P~~~~~~~lN~v~  182 (703)
T KOG2321|consen  124 --------YGRH---YRTRIPKFG-RDMKYHKPSC---DLYLVGS---GSEVYRLNLEQGRF---LNPFETDSGELNVVS  182 (703)
T ss_pred             --------cCee---eeeecCcCC-ccccccCCCc---cEEEeec---CcceEEEEcccccc---ccccccccccceeee
Confidence                    1100   111222111 1111112332   2444432   24899999999998   777776667778888


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC--C-CCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE--G-SGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~--~-~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      .++--..|++....+.        +-.||...+...-.......  . ........++++.|+.||-.+++....+    
T Consensus       183 in~~hgLla~Gt~~g~--------VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G----  250 (703)
T KOG2321|consen  183 INEEHGLLACGTEDGV--------VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG----  250 (703)
T ss_pred             ecCccceEEecccCce--------EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----
Confidence            9988777777775553        77888876544322211111  0 0011122478899999999888877654    


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCC--CCCcEEecC
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE--NGTPAWHPG  610 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~--~~~~~~s~d  610 (642)
                                   .++.||+....+-.+-.+++.  +..+.|-+.
T Consensus       251 -------------~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  251 -------------SVLIYDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             -------------cEEEEEcccCCceeecccCCccceeeeccccc
Confidence                         899999999888777777653  345666443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.013  Score=57.12  Aligned_cols=190  Identities=13%  Similarity=0.053  Sum_probs=111.3

Q ss_pred             CCCEEEEEecCCCceeEEEEECC-----CCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          340 DGGLIVFNHDFELNAGIKIAKSD-----GSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       340 dg~~l~~~~~~~~~~~l~~~d~~-----~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      ||..+..++    .+.|.++..+     ......+........+.-.|.-..|+.....    .....+.||++..  . 
T Consensus       115 dg~Litc~~----sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGk----e~~n~lkiwdle~--~-  183 (412)
T KOG3881|consen  115 DGTLITCVS----SGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGK----ENINELKIWDLEQ--S-  183 (412)
T ss_pred             CCEEEEEec----CCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCch----hcccceeeeeccc--c-
Confidence            455455533    2455665555     3333444444455555555555545443211    1236778888765  1 


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS  492 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s  492 (642)
                      +-....+.++...-.|.-.  .....+.|-|+  ...|+..+   ...++.+||+..+..  ++..+.-....+.+....
T Consensus       184 ~qiw~aKNvpnD~L~LrVP--vW~tdi~Fl~g~~~~~fat~T---~~hqvR~YDt~~qRR--PV~~fd~~E~~is~~~l~  256 (412)
T KOG3881|consen  184 KQIWSAKNVPNDRLGLRVP--VWITDIRFLEGSPNYKFATIT---RYHQVRLYDTRHQRR--PVAQFDFLENPISSTGLT  256 (412)
T ss_pred             eeeeeccCCCCccccceee--eeeccceecCCCCCceEEEEe---cceeEEEecCcccCc--ceeEeccccCcceeeeec
Confidence            0000000001111111111  24455677766  56666555   455899999997764  245555555667788999


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      |+|+.||+....+.        |..+|+.++..-.....+..+       .+.++.-.|.++.|+.+.-+
T Consensus       257 p~gn~Iy~gn~~g~--------l~~FD~r~~kl~g~~~kg~tG-------sirsih~hp~~~~las~GLD  311 (412)
T KOG3881|consen  257 PSGNFIYTGNTKGQ--------LAKFDLRGGKLLGCGLKGITG-------SIRSIHCHPTHPVLASCGLD  311 (412)
T ss_pred             CCCcEEEEecccch--------hheecccCceeeccccCCccC-------CcceEEEcCCCceEEeeccc
Confidence            99999988887765        999999988776554445555       56778888888888776654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.38  E-value=0.062  Score=55.76  Aligned_cols=223  Identities=23%  Similarity=0.264  Sum_probs=127.5

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEee-cC-Cceeeee-ecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIK-DR-TAFYNSW-SPTEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~-~~-~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      ..+.+.+..++...   ....+.+++...+.  ...+.. .. .+....+ ++++..++....     ..+..+.+|++.
T Consensus        71 ~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~~~~~~~  142 (466)
T COG2319          71 IAFSPDGELLLSGS---SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS-----SLDGTVKLWDLS  142 (466)
T ss_pred             EEECCCCcEEEEec---CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC-----CCCccEEEEEec
Confidence            35666676655543   23566666766664  222222 11 3455555 788873433321     225678888875


Q ss_pred             eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce
Q 039497          410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP  489 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~  489 (642)
                      .  .     ..     ....+..+. ..+..+.|+|+++.++....  ....+.+|+..++..   +..+..+...+..+
T Consensus       143 ~--~-----~~-----~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~  204 (466)
T COG2319         143 T--P-----GK-----LIRTLEGHS-ESVTSLAFSPDGKLLASGSS--LDGTIKLWDLRTGKP---LSTLAGHTDPVSSL  204 (466)
T ss_pred             C--C-----Ce-----EEEEEecCc-ccEEEEEECCCCCEEEecCC--CCCceEEEEcCCCce---EEeeccCCCceEEE
Confidence            3  1     01     444455554 56678999999996665542  245788888886554   45555556677888


Q ss_pred             eEecCCCEEEEE-ecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497          490 SWSPKGDLIAFS-SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE  568 (642)
Q Consensus       490 ~~spdG~~l~~~-~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~  568 (642)
                      .|+|+++.++.. +.+.        .|.+||...+.........+..       .. ...|++++..++....++     
T Consensus       205 ~~~~~~~~~~~~~~~d~--------~i~~wd~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~d~-----  263 (466)
T COG2319         205 AFSPDGGLLIASGSSDG--------TIRLWDLSTGKLLRSTLSGHSD-------SV-VSSFSPDGSLLASGSSDG-----  263 (466)
T ss_pred             EEcCCcceEEEEecCCC--------cEEEEECCCCcEEeeecCCCCc-------ce-eEeECCCCCEEEEecCCC-----
Confidence            999999844444 2232        2556777644443311222222       11 227999996666333332     


Q ss_pred             CCCCCCCCCCCCcEEEEEcCCCc--eeeccCCCCCCCCcEEecCCceEEe
Q 039497          569 PVSWPNQFQPYGDLYVVKLDGSG--LRRLTWNGYENGTPAWHPGNQLDLG  616 (642)
Q Consensus       569 ~~~~~~~~~~~~~l~~~~~~~~~--~~~lt~~~~~~~~~~~s~dg~~~~~  616 (642)
                                  .+.+|+.....  ...+..+...+....|+|++..+++
T Consensus       264 ------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         264 ------------TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             ------------cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence                        67777766444  2333233345566789998877766

>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.12  Score=57.84  Aligned_cols=113  Identities=22%  Similarity=0.305  Sum_probs=76.3

Q ss_pred             cEECCCC-CeEEEEeCCCC-ceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecCCCCCCCCceeEEE
Q 039497          441 PSCSPDG-KFLVFRSGRSG-HKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYV  517 (642)
Q Consensus       441 ~~~SpDg-~~l~~~~~~~g-~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~l~~  517 (642)
                      +.++.|+ .++++.....+ ..++..+....+..   ...++.+.+.+.. +.++.+.++++|.+....   .+..+||.
T Consensus       345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~---~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~---~~~~~ly~  418 (755)
T KOG2100|consen  345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSE---PRMLTSGNWEVTSILGYDKDSNRIYFDAYEED---PSERHLYS  418 (755)
T ss_pred             ceEeecCCceeEEEeeccCCEEEEEEEEcCCCCc---cccccccceEEEEeccccCCCceEEEEecCCC---CCceEEEE
Confidence            5678887 44555554445 56777777766633   4778877776643 367789999999988763   37899999


Q ss_pred             EeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          518 IKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       518 ~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      +++.......++......     ++...++.+++..+++++......
T Consensus       419 i~~~~~~~~~lt~~~~~~-----~~~~~~~~~~~~~~~~v~~~~gP~  460 (755)
T KOG2100|consen  419 ISLGSGTVESLTCSLITG-----PCTYLSVSFSKSAKYYVLSCSGPK  460 (755)
T ss_pred             EEccccccccccccCCCC-----cceEEEEecCCcccEEEEEccCCC
Confidence            999887776666533222     124457788888888777765543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=97.36  E-value=0.0055  Score=58.18  Aligned_cols=94  Identities=10%  Similarity=0.034  Sum_probs=63.9

Q ss_pred             CceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497          352 LNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI  429 (642)
Q Consensus       352 ~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  429 (642)
                      ..+.|+++|+..++...-..  .+.+..+.+.|+.-.|+...      ..+..+++|.+..  +            ....
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~------SkD~svRlwnI~~--~------------~Cv~  172 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSA------SKDHSVRLWNIQT--D------------VCVA  172 (385)
T ss_pred             ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEe------cCCceEEEEeccC--C------------eEEE
Confidence            45789999998876544333  67788999999987777766      3488999999977  2            2222


Q ss_pred             cccc---CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497          430 LTKE---ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV  468 (642)
Q Consensus       430 l~~~---~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~  468 (642)
                      +..+   ....+.++.|++||.+|+-...   +-.|.+|++.
T Consensus       173 VfGG~egHrdeVLSvD~~~~gd~i~ScGm---Dhslk~W~l~  211 (385)
T KOG1034|consen  173 VFGGVEGHRDEVLSVDFSLDGDRIASCGM---DHSLKLWRLN  211 (385)
T ss_pred             EecccccccCcEEEEEEcCCCCeeeccCC---cceEEEEecC
Confidence            2221   1145667899999998875443   2356666655

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=97.34  E-value=0.016  Score=59.91  Aligned_cols=235  Identities=12%  Similarity=0.094  Sum_probs=129.1

Q ss_pred             cCCCCEEEEEecCCCceeEEEEECCCCCee----EE----eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRW----TL----IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~----~l----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      .|.-+.|+++..++  +.|-++|...-..+    ++    .+...+.++.|.| |+..++..      .++..+++|++.
T Consensus        60 ~~n~eHiLavadE~--G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsa------sGDsT~r~Wdvk  130 (720)
T KOG0321|consen   60 APNKEHILAVADED--GGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSA------SGDSTIRPWDVK  130 (720)
T ss_pred             CCCccceEEEecCC--CceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEc------cCCceeeeeeec
Confidence            34556677766543  34555555433222    22    2256688999999 77666665      358999999997


Q ss_pred             eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc--c---------------
Q 039497          410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE--F---------------  472 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~--~---------------  472 (642)
                      .        ++..   -...+..+. +.+....|+|+..-++.+..++|  +|.+||..-..  .               
T Consensus       131 ~--------s~l~---G~~~~~GH~-~SvkS~cf~~~n~~vF~tGgRDg--~illWD~R~n~~d~~e~~~~~~~~~~n~~  196 (720)
T KOG0321|consen  131 T--------SRLV---GGRLNLGHT-GSVKSECFMPTNPAVFCTGGRDG--EILLWDCRCNGVDALEEFDNRIYGRHNTA  196 (720)
T ss_pred             c--------ceee---cceeecccc-cccchhhhccCCCcceeeccCCC--cEEEEEEeccchhhHHHHhhhhhccccCC
Confidence            6        2211   112234444 77888999999998888888877  45555543111  0               


Q ss_pred             ccceeeCCCC-------CCcccc---eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce----EEeeecCCCCCCC
Q 039497          473 NGDIRQLTDG-------PWIDTM---PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL----RRIHVAGPEGSGD  538 (642)
Q Consensus       473 ~~~~~~l~~~-------~~~~~~---~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~  538 (642)
                      +++.+++...       ...+..   ..+..|...|+-++..+       ..|.+||+.....    ..+.......  .
T Consensus       197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D-------~~iKVWDLRk~~~~~r~ep~~~~~~~t--~  267 (720)
T KOG0321|consen  197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAAD-------STIKVWDLRKNYTAYRQEPRGSDKYPT--H  267 (720)
T ss_pred             CCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCC-------cceEEEeecccccccccCCCcccCccC--c
Confidence            0011122110       111122   35666888787777622       2389999964321    1110000000  0


Q ss_pred             ccc-ccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC-----CCCCcEEecCCc
Q 039497          539 VDR-ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY-----ENGTPAWHPGNQ  612 (642)
Q Consensus       539 ~~~-~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~-----~~~~~~~s~dg~  612 (642)
                      ..+ ..+..+.....|.+|+....++                 .||.|++.+-....+.-..+     ....-..|||++
T Consensus       268 skrs~G~~nL~lDssGt~L~AsCtD~-----------------sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~  330 (720)
T KOG0321|consen  268 SKRSVGQVNLILDSSGTYLFASCTDN-----------------SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC  330 (720)
T ss_pred             ccceeeeEEEEecCCCCeEEEEecCC-----------------cEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence            000 0123445556679998888754                 89999987754333322111     112335688999


Q ss_pred             eEEeecCCC
Q 039497          613 LDLGKLRLE  621 (642)
Q Consensus       613 ~~~~~~~~~  621 (642)
                      ++++.-..+
T Consensus       331 ~l~SgSsd~  339 (720)
T KOG0321|consen  331 SLLSGSSDE  339 (720)
T ss_pred             eEeccCCCc
Confidence            888765444

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.33  E-value=0.02  Score=54.37  Aligned_cols=200  Identities=13%  Similarity=0.163  Sum_probs=103.5

Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      ..++.++|.||.+.|+.+.+        ....|+.++.  +      |.    ..+.+.-...+....+++.-+|+++ .
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d--------~~~~i~els~--~------G~----vlr~i~l~g~~D~EgI~y~g~~~~v-l   80 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQD--------EPGEIYELSL--D------GK----VLRRIPLDGFGDYEGITYLGNGRYV-L   80 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEET--------TTTEEEEEET--T------------EEEEEE-SS-SSEEEEEE-STTEEE-E
T ss_pred             CCccccEEcCCCCeEEEEEC--------CCCEEEEEcC--C------CC----EEEEEeCCCCCCceeEEEECCCEEE-E
Confidence            45889999999999998884        3445677776  3      31    4455543332556678888777554 4


Q ss_pred             EeCCCCceeEEEEECCC--Cccc-cceeeC--CC---CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeC--CC
Q 039497          453 RSGRSGHKNLFVLDAVN--GEFN-GDIRQL--TD---GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP--DG  522 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~--g~~~-~~~~~l--~~---~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~--~~  522 (642)
                      ...+.+  .|+++++..  .... ...+.+  ..   .......++|+|.++.|++...+      .+..||.++.  ..
T Consensus        81 ~~Er~~--~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~------~P~~l~~~~~~~~~  152 (248)
T PF06977_consen   81 SEERDQ--RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER------KPKRLYEVNGFPGG  152 (248)
T ss_dssp             EETTTT--EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES------SSEEEEEEESTT-S
T ss_pred             EEcCCC--cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC------CChhhEEEccccCc
Confidence            555544  677777632  2210 001112  11   22235678999998888877544      3456888876  22


Q ss_pred             CceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee--eccCCC-
Q 039497          523 SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR--RLTWNG-  599 (642)
Q Consensus       523 ~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~lt~~~-  599 (642)
                      ............. ....-..+..+.+.|....|++.+....                .|..+|.+|.-+.  .|.... 
T Consensus       153 ~~~~~~~~~~~~~-~~~~~~d~S~l~~~p~t~~lliLS~es~----------------~l~~~d~~G~~~~~~~L~~g~~  215 (248)
T PF06977_consen  153 FDLFVSDDQDLDD-DKLFVRDLSGLSYDPRTGHLLILSDESR----------------LLLELDRQGRVVSSLSLDRGFH  215 (248)
T ss_dssp             S--EEEE-HHHH--HT--SS---EEEEETTTTEEEEEETTTT----------------EEEEE-TT--EEEEEE-STTGG
T ss_pred             cceeecccccccc-ccceeccccceEEcCCCCeEEEEECCCC----------------eEEEECCCCCEEEEEEeCCccc
Confidence            2222111111000 0000013467889998888988887643                7888887775433  333310 


Q ss_pred             ------CCCCCcEEecCCceEEeec
Q 039497          600 ------YENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       600 ------~~~~~~~~s~dg~~~~~~~  618 (642)
                            ...-.++|.++|.+++.+.
T Consensus       216 gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  216 GLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             G-SS---SEEEEEE-TT--EEEEET
T ss_pred             CcccccCCccEEEECCCCCEEEEcC
Confidence                  1124679999998887663

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.31  E-value=0.0011  Score=63.09  Aligned_cols=199  Identities=13%  Similarity=0.044  Sum_probs=122.1

Q ss_pred             CceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCC
Q 039497           34 FHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPD  113 (642)
Q Consensus        34 ~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (642)
                      .-.+.|++|.+.+...++-    ++|..++..+....+|.++.+-....-.+..+.+   -...+..+.++-.+....  
T Consensus       228 ~c~~~L~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~tlihHceaV---Lhlrf~ng~mvtcSkDrs--  298 (499)
T KOG0281|consen  228 ECLKILTGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAV---LHLRFSNGYMVTCSKDRS--  298 (499)
T ss_pred             HHHHhhhcCCCcEEeeecc----ceEEEecCCCceEEEEeccCCchhhHHhhhccee---EEEEEeCCEEEEecCCce--
Confidence            3457899999999999886    4566676667788899985443110011111111   023346666655443322  


Q ss_pred             cccccccceEEEEccCCce--EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec
Q 039497          114 QIFKSWSALYSTDLKASKF--TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE  191 (642)
Q Consensus       114 ~~~~~~~~l~~~~~~~~~~--~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~  191 (642)
                            ..+|.+...+..+  +.|..+.+......|  |.|+|+.++.+.            .|-+|+..+++..+....
T Consensus       299 ------iaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDR------------TikvW~~st~efvRtl~g  358 (499)
T KOG0281|consen  299 ------IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR------------TIKVWSTSTCEFVRTLNG  358 (499)
T ss_pred             ------eEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCc------------eEEEEeccceeeehhhhc
Confidence                  1577665444221  234445555544555  577999887665            789999999997777664


Q ss_pred             CC-CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee
Q 039497          192 RG-GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH  270 (642)
Q Consensus       192 ~~-~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~  270 (642)
                      +. +.+..--.|+++++. ..+.+.  ..++...|.       ....+.++..-+..+.|  |.++|+.     |.....
T Consensus       359 HkRGIAClQYr~rlvVSG-SSDntI--Rlwdi~~G~-------cLRvLeGHEeLvRciRF--d~krIVS-----GaYDGk  421 (499)
T KOG0281|consen  359 HKRGIACLQYRDRLVVSG-SSDNTI--RLWDIECGA-------CLRVLEGHEELVRCIRF--DNKRIVS-----GAYDGK  421 (499)
T ss_pred             ccccceehhccCeEEEec-CCCceE--EEEeccccH-------HHHHHhchHHhhhheee--cCceeee-----ccccce
Confidence            43 444444466777776 556644  445666663       44555666544556666  7788887     555669


Q ss_pred             EEEEEeec
Q 039497          271 IEIYDLTL  278 (642)
Q Consensus       271 i~~~d~~~  278 (642)
                      |.+||+..
T Consensus       422 ikvWdl~a  429 (499)
T KOG0281|consen  422 IKVWDLQA  429 (499)
T ss_pred             EEEEeccc
Confidence            99999944

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=97.28  E-value=0.04  Score=57.17  Aligned_cols=248  Identities=11%  Similarity=0.061  Sum_probs=123.6

Q ss_pred             CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce-eEE-eeeCCCccEEcCCCCEEEEEecCCCceeE
Q 039497          279 NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE-LRM-LRLNGSFPSFSPDGGLIVFNHDFELNAGI  356 (642)
Q Consensus       279 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l  356 (642)
                      .+...+.+..|-| |+.++.. ..|+..    ...|.+....-... +-+ ........+|+|+..-++..+.+++..-|
T Consensus        98 aH~nAifDl~wap-ge~~lVs-asGDsT----~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill  171 (720)
T KOG0321|consen   98 AHKNAIFDLKWAP-GESLLVS-ASGDST----IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL  171 (720)
T ss_pred             cccceeEeeccCC-CceeEEE-ccCCce----eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence            3445566778999 5544433 334421    33343322111100 000 01112346788888766666666666666


Q ss_pred             EEEECCCCC-------------------eeEEee--------cCCcee---eeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497          357 KIAKSDGSK-------------------RWTLIK--------DRTAFY---NSWSPTEKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       357 ~~~d~~~~~-------------------~~~l~~--------~~~~~~---~~~spdg~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      |.+...+..                   ..++..        ...+..   +.+..|...|+.++      ..++.+++|
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSag------a~D~~iKVW  245 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAG------AADSTIKVW  245 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeecc------CCCcceEEE
Confidence            666544411                   011111        223444   56677888888776      348999999


Q ss_pred             EEEeecCCCCCCCCCccccceEEccccCCCCc--cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNN--AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                      ++..+..    +...+ +.....+..+.....  ..+....-|.+|+..-.   +..||.|++.+-..  .+..+..+..
T Consensus       246 DLRk~~~----~~r~e-p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt---D~sIy~ynm~s~s~--sP~~~~sg~~  315 (720)
T KOG0321|consen  246 DLRKNYT----AYRQE-PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT---DNSIYFYNMRSLSI--SPVAEFSGKL  315 (720)
T ss_pred             eeccccc----ccccC-CCcccCccCcccceeeeEEEEecCCCCeEEEEec---CCcEEEEeccccCc--CchhhccCcc
Confidence            9965111    01110 001111111110122  22333344577755443   34899999875331  0122222221


Q ss_pred             ccc---ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCE-EEEEE
Q 039497          485 IDT---MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW-LLFTA  560 (642)
Q Consensus       485 ~~~---~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~-l~~~~  560 (642)
                      ...   .-..||||.+|+-.+.+..        .|+|.++.-+.-.....++..       .+..+.|.|.-.. ++..+
T Consensus       316 ~~sf~vks~lSpd~~~l~SgSsd~~--------ayiw~vs~~e~~~~~l~Ght~-------eVt~V~w~pS~~t~v~TcS  380 (720)
T KOG0321|consen  316 NSSFYVKSELSPDDCSLLSGSSDEQ--------AYIWVVSSPEAPPALLLGHTR-------EVTTVRWLPSATTPVATCS  380 (720)
T ss_pred             cceeeeeeecCCCCceEeccCCCcc--------eeeeeecCccCChhhhhCcce-------EEEEEeeccccCCCceeec
Confidence            111   1256999999988877664        788888766554444434443       5667777554322 44444


Q ss_pred             ecC
Q 039497          561 NLG  563 (642)
Q Consensus       561 ~~~  563 (642)
                      .+.
T Consensus       381 dD~  383 (720)
T KOG0321|consen  381 DDF  383 (720)
T ss_pred             cCc
Confidence            443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=97.27  E-value=0.055  Score=50.75  Aligned_cols=222  Identities=12%  Similarity=0.054  Sum_probs=126.0

Q ss_pred             CccEEcCCCC-----EEEEEecCCCceeEEEEECCCCCeeEEe---e------cCCceeeeeecCCCEEEEEEcCCCccc
Q 039497          333 SFPSFSPDGG-----LIVFNHDFELNAGIKIAKSDGSKRWTLI---K------DRTAFYNSWSPTEKHVIYTSTGPIFQS  398 (642)
Q Consensus       333 ~~~~~spdg~-----~l~~~~~~~~~~~l~~~d~~~~~~~~l~---~------~~~~~~~~~spdg~~l~~~~~~~~~~~  398 (642)
                      ....|.||.+     .|+..   +..-+||.+..+.++.....   .      ...+.++.|..-.-.++.++.      
T Consensus       100 tK~~wiPd~~g~~pdlLATs---~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS------  170 (364)
T KOG0290|consen  100 TKLMWIPDSKGVYPDLLATS---SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS------  170 (364)
T ss_pred             cceEecCCccccCcchhhcc---cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec------
Confidence            4557877764     23322   22345666665444322111   1      234567778764444444432      


Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497          399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ  478 (642)
Q Consensus       399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~  478 (642)
                      -+.+..||++....      .+.    ...+|..+. ..+..++|+.+|..++..-..+|  .+.++|+..-+.   .+.
T Consensus       171 iDTTCTiWdie~~~------~~~----vkTQLIAHD-KEV~DIaf~~~s~~~FASvgaDG--SvRmFDLR~leH---STI  234 (364)
T KOG0290|consen  171 IDTTCTIWDIETGV------SGT----VKTQLIAHD-KEVYDIAFLKGSRDVFASVGADG--SVRMFDLRSLEH---STI  234 (364)
T ss_pred             ccCeEEEEEEeecc------ccc----eeeEEEecC-cceeEEEeccCccceEEEecCCC--cEEEEEeccccc---ceE
Confidence            37788999998710      011    345565555 78899999998877755555444  677788876654   344


Q ss_pred             CCCCCC---cccceeEecC-CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497          479 LTDGPW---IDTMPSWSPK-GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       479 l~~~~~---~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      +...+.   ..-.++|++. =++++....+.       ..|.+.|+.-.........++.+       .+..++|.|-..
T Consensus       235 IYE~p~~~~pLlRLswnkqDpnymATf~~dS-------~~V~iLDiR~P~tpva~L~~H~a-------~VNgIaWaPhS~  300 (364)
T KOG0290|consen  235 IYEDPSPSTPLLRLSWNKQDPNYMATFAMDS-------NKVVILDIRVPCTPVARLRNHQA-------SVNGIAWAPHSS  300 (364)
T ss_pred             EecCCCCCCcceeeccCcCCchHHhhhhcCC-------ceEEEEEecCCCcceehhhcCcc-------cccceEecCCCC
Confidence            433332   2234466653 35555544433       34888888765444333345555       678899999887


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc------eeeccCCCCCCCCcEEec
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG------LRRLTWNGYENGTPAWHP  609 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~lt~~~~~~~~~~~s~  609 (642)
                      .-+.++.+.-                +.-.||+..-.      +......+..+..+.|++
T Consensus       301 ~hictaGDD~----------------qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  301 SHICTAGDDC----------------QALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSS  345 (364)
T ss_pred             ceeeecCCcc----------------eEEEEecccccccCCCCchhhhhccceeeeeeecc
Confidence            7666665543                45556665321      111122345667888884

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.26  E-value=0.00053  Score=71.37  Aligned_cols=189  Identities=14%  Similarity=0.134  Sum_probs=116.6

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      ...+.++.|+++...|+...       ..+.+++|++..        +.     ..+.|+.+. .....+.|+|-|.+.+
T Consensus        70 espIeSl~f~~~E~Llaags-------asgtiK~wDlee--------Ak-----~vrtLtgh~-~~~~sv~f~P~~~~~a  128 (825)
T KOG0267|consen   70 ESPIESLTFDTSERLLAAGS-------ASGTIKVWDLEE--------AK-----IVRTLTGHL-LNITSVDFHPYGEFFA  128 (825)
T ss_pred             CCcceeeecCcchhhhcccc-------cCCceeeeehhh--------hh-----hhhhhhccc-cCcceeeeccceEEec
Confidence            56788999999888777665       377999999976        23     566777766 5566788999988764


Q ss_pred             EEeCCCCceeEEEEECC-CCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          452 FRSGRSGHKNLFVLDAV-NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~-~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      -.+   ...++-+||.. .|-    ......+.+.+....|+|||++++-...+.        .+.+||+..|+.-.-..
T Consensus       129 ~gS---tdtd~~iwD~Rk~Gc----~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~--------tvki~d~~agk~~~ef~  193 (825)
T KOG0267|consen  129 SGS---TDTDLKIWDIRKKGC----SHTYKSHTRVVDVLRLSPDGRWVASGGEDN--------TVKIWDLTAGKLSKEFK  193 (825)
T ss_pred             ccc---ccccceehhhhccCc----eeeecCCcceeEEEeecCCCceeeccCCcc--------eeeeecccccccccccc
Confidence            333   23467778876 333    244444556677789999999988776644        38889986655432111


Q ss_pred             cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEec
Q 039497          531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHP  609 (642)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~  609 (642)
                       .+.+       .+..+-|.|-.-.+.-.+.+.                 -+-+|++.+=+ +-..-.....+....|.|
T Consensus       194 -~~e~-------~v~sle~hp~e~Lla~Gs~d~-----------------tv~f~dletfe~I~s~~~~~~~v~~~~fn~  248 (825)
T KOG0267|consen  194 -SHEG-------KVQSLEFHPLEVLLAPGSSDR-----------------TVRFWDLETFEVISSGKPETDGVRSLAFNP  248 (825)
T ss_pred             -cccc-------cccccccCchhhhhccCCCCc-----------------eeeeeccceeEEeeccCCccCCceeeeecC
Confidence             2223       334444554433333223222                 45555655322 111111234567889999


Q ss_pred             CCceEEeecCCC
Q 039497          610 GNQLDLGKLRLE  621 (642)
Q Consensus       610 dg~~~~~~~~~~  621 (642)
                      |++.+++..+..
T Consensus       249 ~~~~~~~G~q~s  260 (825)
T KOG0267|consen  249 DGKIVLSGEQIS  260 (825)
T ss_pred             CceeeecCchhh
Confidence            999887765433

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.26  E-value=0.016  Score=54.87  Aligned_cols=152  Identities=13%  Similarity=0.163  Sum_probs=95.7

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCe--eEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR--WTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~--~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      ...+++  ++|+.+-.    +.|+++.....-.  ..+..   ..+...+.-.-+...|+|-+.      ..+.++|.++
T Consensus        99 ~V~l~r--~riVvvl~----~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~------k~GqvQi~dL  166 (346)
T KOG2111|consen   99 AVKLRR--DRIVVVLE----NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF------KTGQVQIVDL  166 (346)
T ss_pred             eEEEcC--CeEEEEec----CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC------ccceEEEEEh
Confidence            344554  55766543    6788888764321  22211   223333333334455666553      3578888887


Q ss_pred             EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC--Ccc
Q 039497          409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--WID  486 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~~~  486 (642)
                      ..  .      ..   +.+..+..+. ..+..++++-+|..|+.++.+.  .=|.++|..+|+.   +..+-.+.  ..+
T Consensus       167 ~~--~------~~---~~p~~I~AH~-s~Iacv~Ln~~Gt~vATaStkG--TLIRIFdt~~g~~---l~E~RRG~d~A~i  229 (346)
T KOG2111|consen  167 AS--T------KP---NAPSIINAHD-SDIACVALNLQGTLVATASTKG--TLIRIFDTEDGTL---LQELRRGVDRADI  229 (346)
T ss_pred             hh--c------Cc---CCceEEEccc-CceeEEEEcCCccEEEEeccCc--EEEEEEEcCCCcE---eeeeecCCchheE
Confidence            65  2      10   0234555555 6788899999999998887543  3577899999986   56665432  356


Q ss_pred             cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      ..++||||+.+|+.+++.++        |.++.+..
T Consensus       230 y~iaFSp~~s~LavsSdKgT--------lHiF~l~~  257 (346)
T KOG2111|consen  230 YCIAFSPNSSWLAVSSDKGT--------LHIFSLRD  257 (346)
T ss_pred             EEEEeCCCccEEEEEcCCCe--------EEEEEeec
Confidence            77899999999999998865        66665543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.25  E-value=0.11  Score=48.88  Aligned_cols=203  Identities=14%  Similarity=0.127  Sum_probs=114.4

Q ss_pred             CceeCCCCcE-EEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cCC----CcceEeeCCeEEEEE-ecCC---C
Q 039497          144 SPSVSYSGKF-IAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ERG----GWPTWSGDSTIYFHR-QADD---G  213 (642)
Q Consensus       144 ~~~~SPDG~~-la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~----~~~~wspdg~~~~~~-~~~~---g  213 (642)
                      ..+++|--++ +||++.-           +.-.+++|..+++..++.. ..+    +.-.|||||+++|.. ++.+   |
T Consensus        72 gi~~~p~~~ravafARrP-----------Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rG  140 (366)
T COG3490          72 GIAFHPALPRAVAFARRP-----------GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRG  140 (366)
T ss_pred             CeecCCCCcceEEEEecC-----------CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCc
Confidence            3677776544 6777643           3356788888887655544 333    345999999877764 4443   3


Q ss_pred             ceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEe------cc-------CCceeeEEEEEe----
Q 039497          214 WWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATR------RK-------NRNFRHIEIYDL----  276 (642)
Q Consensus       214 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~------~~-------~~~~~~i~~~d~----  276 (642)
                      ...||...  .+.+      ..-.+..++..-..+.+.+||+.|+.+..      .-       ......+.+.|-    
T Consensus       141 ViGvYd~r--~~fq------rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~  212 (366)
T COG3490         141 VIGVYDAR--EGFQ------RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN  212 (366)
T ss_pred             eEEEEecc--cccc------eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc
Confidence            34555544  3321      44455556666677889999999998642      11       112233444442    


Q ss_pred             -ec-------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCC----------CccEEc
Q 039497          277 -TL-------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNG----------SFPSFS  338 (642)
Q Consensus       277 -~~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~s  338 (642)
                       ..       ....++.....-+||+.++=+..++...  ...  -++....+.+.++......          ..++.+
T Consensus       213 liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~--d~p--pLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n  288 (366)
T COG3490         213 LIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRN--DLP--PLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN  288 (366)
T ss_pred             hhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCc--cCC--cceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence             01       1233455667888998877777776642  111  1222222222232222111          234555


Q ss_pred             CCCCEEEEEecCCCceeEEEEECCCCCeeEEee
Q 039497          339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK  371 (642)
Q Consensus       339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~  371 (642)
                      .+...++..+.+  .+...++|.+++..+....
T Consensus       289 ~~~glV~lTSP~--GN~~vi~da~tG~vv~~a~  319 (366)
T COG3490         289 RRDGLVALTSPR--GNRAVIWDAATGAVVSEAA  319 (366)
T ss_pred             ccCCeEEEecCC--CCeEEEEEcCCCcEEeccc
Confidence            555666666643  3567778999998665543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.22  E-value=0.0019  Score=64.05  Aligned_cols=221  Identities=13%  Similarity=0.125  Sum_probs=137.5

Q ss_pred             eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          329 RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       329 ~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .+....+.++.+|+.+++..   .+++|-.+|-.++....-.. ...+.++.|-.+..+++++.        ...++||+
T Consensus       129 eFGPY~~~ytrnGrhlllgG---rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ--------K~y~yvYD  197 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGG---RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ--------KKYVYVYD  197 (545)
T ss_pred             ccCCeeeeecCCccEEEecC---CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh--------hceEEEec
Confidence            45556778999999999954   35788888877776544433 67788999999888887765        33444444


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT  487 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~  487 (642)
                      -          .|.    +...|...  ..+..+.|-|-- +|+.+.+..|  .|.-.|+.+|+.   +..+....+...
T Consensus       198 ~----------~Gt----ElHClk~~--~~v~rLeFLPyH-fLL~~~~~~G--~L~Y~DVS~Gkl---Va~~~t~~G~~~  255 (545)
T KOG1272|consen  198 N----------NGT----ELHCLKRH--IRVARLEFLPYH-FLLVAASEAG--FLKYQDVSTGKL---VASIRTGAGRTD  255 (545)
T ss_pred             C----------CCc----EEeehhhc--Cchhhhcccchh-heeeecccCC--ceEEEeechhhh---hHHHHccCCccc
Confidence            2          232    33444333  356667788763 5666665544  788889999997   566655555544


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM  566 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~  566 (642)
                      ...-.|-.-.|-....++.        +-+|.....+.- .+.  .+.+       .+.++++.++|++++.+..+.   
T Consensus       256 vm~qNP~NaVih~GhsnGt--------VSlWSP~skePLvKiL--cH~g-------~V~siAv~~~G~YMaTtG~Dr---  315 (545)
T KOG1272|consen  256 VMKQNPYNAVIHLGHSNGT--------VSLWSPNSKEPLVKIL--CHRG-------PVSSIAVDRGGRYMATTGLDR---  315 (545)
T ss_pred             hhhcCCccceEEEcCCCce--------EEecCCCCcchHHHHH--hcCC-------CcceEEECCCCcEEeeccccc---
Confidence            4555554443333333332        677777655432 111  2233       678999999999998887654   


Q ss_pred             cCCCCCCCCCCCCCcEEEEEcCCC-ceeeccCCCCCCCCcEEecCCceEEee
Q 039497          567 AEPVSWPNQFQPYGDLYVVKLDGS-GLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       567 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                                    .+-+||+..- ++..+.. ......+++|.-|.+-++-
T Consensus       316 --------------~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~  352 (545)
T KOG1272|consen  316 --------------KVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSY  352 (545)
T ss_pred             --------------ceeEeeeccccccceeec-CCCccccccccccceeeec
Confidence                          5566676542 2222222 2334567888877766553

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.20  E-value=0.36  Score=49.93  Aligned_cols=93  Identities=14%  Similarity=0.073  Sum_probs=51.7

Q ss_pred             CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497          446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG  524 (642)
Q Consensus       446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~  524 (642)
                      ++..|++.+   ....|+.+|..+|+.   +-..... ......|..  .|..|++.+.++.        |+.+|.++++
T Consensus       278 ~~~~vyv~~---~~G~l~~~d~~tG~~---~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~--------l~~~d~~tG~  341 (377)
T TIGR03300       278 DDNRLYVTD---ADGVVVALDRRSGSE---LWKNDELKYRQLTAPAV--VGGYLVVGDFEGY--------LHWLSREDGS  341 (377)
T ss_pred             eCCEEEEEC---CCCeEEEEECCCCcE---EEccccccCCccccCEE--ECCEEEEEeCCCE--------EEEEECCCCC
Confidence            456776665   334899999999985   2222221 122334444  3667777765543        9999998776


Q ss_pred             eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       525 ~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      ..--.......       ....+.+. ++ .|++.+.++
T Consensus       342 ~~~~~~~~~~~-------~~~sp~~~-~~-~l~v~~~dG  371 (377)
T TIGR03300       342 FVARLKTDGSG-------IASPPVVV-GD-GLLVQTRDG  371 (377)
T ss_pred             EEEEEEcCCCc-------cccCCEEE-CC-EEEEEeCCc
Confidence            64322211111       12345443 33 477776654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.19  E-value=0.081  Score=50.19  Aligned_cols=205  Identities=14%  Similarity=0.153  Sum_probs=111.0

Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      ..++++.|+|+.+.|+.+.        +....|..++.  .      |.    -.+.++-........+.+.-+|++++ 
T Consensus        86 ~nvS~LTynp~~rtLFav~--------n~p~~iVElt~--~------Gd----lirtiPL~g~~DpE~Ieyig~n~fvi-  144 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVT--------NKPAAIVELTK--E------GD----LIRTIPLTGFSDPETIEYIGGNQFVI-  144 (316)
T ss_pred             ccccceeeCCCcceEEEec--------CCCceEEEEec--C------Cc----eEEEecccccCChhHeEEecCCEEEE-
Confidence            4488999999999998887        45667788877  3      32    44554433223455678887776654 


Q ss_pred             EeCCCCceeEEEEECCCCccc--cceeeCCCC---CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          453 RSGRSGHKNLFVLDAVNGEFN--GDIRQLTDG---PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~--~~~~~l~~~---~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                      ...|...-.++.++.++....  .....|...   .......+|+|..+.|++...++      +..||.++..-.....
T Consensus       145 ~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~------P~~I~~~~~~~~~l~~  218 (316)
T COG3204         145 VDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN------PIGIFEVTQSPSSLSV  218 (316)
T ss_pred             EehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC------CcEEEEEecCCccccc
Confidence            445544333444444432210  001112111   22335679999999998887763      5678888744322211


Q ss_pred             eeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec--cCCC--C---
Q 039497          528 IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL--TWNG--Y---  600 (642)
Q Consensus       528 l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l--t~~~--~---  600 (642)
                      -...........=-..+..+.|.+....|++.+.+..                .|-.+++.|.-...+  +...  .   
T Consensus       219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr----------------~l~Evd~~G~~~~~lsL~~g~~gL~~d  282 (316)
T COG3204         219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR----------------RLLEVDLSGEVIELLSLTKGNHGLSSD  282 (316)
T ss_pred             ccccCcccccceEeeccccceecCCCCcEEEEecCCc----------------eEEEEecCCCeeeeEEeccCCCCCccc
Confidence            0000110000000002345777776777777776643                577777777643333  2211  0   


Q ss_pred             --CCCCcEEecCCceE-EeecCC
Q 039497          601 --ENGTPAWHPGNQLD-LGKLRL  620 (642)
Q Consensus       601 --~~~~~~~s~dg~~~-~~~~~~  620 (642)
                        ....++..++|.++ ++.-|+
T Consensus       283 ipqaEGiamDd~g~lYIvSEPnl  305 (316)
T COG3204         283 IPQAEGIAMDDDGNLYIVSEPNL  305 (316)
T ss_pred             CCCcceeEECCCCCEEEEecCCc
Confidence              12457788888655 444443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.18  E-value=0.11  Score=49.57  Aligned_cols=199  Identities=15%  Similarity=0.151  Sum_probs=102.5

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+.|.||.+.|+.+.+  ....|+.+++++...+.+..  .+....+++.-++. ++++..      ....+.++.++. 
T Consensus        26 GLTy~pd~~tLfaV~d--~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~E------r~~~L~~~~~~~-   95 (248)
T PF06977_consen   26 GLTYNPDTGTLFAVQD--EPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGR-YVLSEE------RDQRLYIFTIDD-   95 (248)
T ss_dssp             EEEEETTTTEEEEEET--TTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTE-EEEEET------TTTEEEEEEE---
T ss_pred             ccEEcCCCCeEEEEEC--CCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCE-EEEEEc------CCCcEEEEEEec-
Confidence            5689999888888774  46789999988665555544  45677888886664 445552      256666666644 


Q ss_pred             cCCCCCCCCCccc-cceEEcc--cc--CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee-----CC-
Q 039497          412 LDPSDDNNREEIP-CDVKILT--KE--ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-----LT-  480 (642)
Q Consensus       412 ~~~~~~~~~~~~~-~~~~~l~--~~--~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-----l~-  480 (642)
                       +      +..+. ...+.+.  ..  .......++|.|.++.|+.+..+ ....||.++...+...  +..     +. 
T Consensus        96 -~------~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-~P~~l~~~~~~~~~~~--~~~~~~~~~~~  165 (248)
T PF06977_consen   96 -D------TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-KPKRLYEVNGFPGGFD--LFVSDDQDLDD  165 (248)
T ss_dssp             ---------TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-SSEEEEEEESTT-SS----EEEE-HHHH-
T ss_pred             -c------ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-CChhhEEEccccCccc--eeecccccccc
Confidence             2      11110 0112222  11  11235678999998888877654 3457888876211110  011     11 


Q ss_pred             --CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEEE
Q 039497          481 --DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWLL  557 (642)
Q Consensus       481 --~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~  557 (642)
                        ..-.....++++|....|+..+....       .|..+|.++.-...+.... ..+. ...-.++.-++|.+||+ ||
T Consensus       166 ~~~~~~d~S~l~~~p~t~~lliLS~es~-------~l~~~d~~G~~~~~~~L~~g~~gl-~~~~~QpEGIa~d~~G~-LY  236 (248)
T PF06977_consen  166 DKLFVRDLSGLSYDPRTGHLLILSDESR-------LLLELDRQGRVVSSLSLDRGFHGL-SKDIPQPEGIAFDPDGN-LY  236 (248)
T ss_dssp             HT--SS---EEEEETTTTEEEEEETTTT-------EEEEE-TT--EEEEEE-STTGGG--SS---SEEEEEE-TT---EE
T ss_pred             ccceeccccceEEcCCCCeEEEEECCCC-------eEEEECCCCCEEEEEEeCCcccCc-ccccCCccEEEECCCCC-EE
Confidence              01123456789998888888887654       4888997665333333221 0000 00011456789999995 66


Q ss_pred             EEEe
Q 039497          558 FTAN  561 (642)
Q Consensus       558 ~~~~  561 (642)
                      +++.
T Consensus       237 IvsE  240 (248)
T PF06977_consen  237 IVSE  240 (248)
T ss_dssp             EEET
T ss_pred             EEcC
Confidence            6663

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.15  E-value=0.021  Score=58.68  Aligned_cols=133  Identities=15%  Similarity=0.126  Sum_probs=93.8

Q ss_pred             CceeEEEEECCCCccccceeeCCC--CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCC
Q 039497          458 GHKNLFVLDAVNGEFNGDIRQLTD--GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG  535 (642)
Q Consensus       458 g~~~l~~~d~~~g~~~~~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~  535 (642)
                      +...|+++++..|+.   -..++.  +.+.+....|+.+-..|+-.+.+        .++..|++..+...++...... 
T Consensus        78 ~~g~v~~ys~~~g~i---t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad--------~~v~~~~~~~~~~~~~~~~~~~-  145 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEI---TAKLSTDKHYGNVNEILDAQRLGCIYSVGAD--------LKVVYILEKEKVIIRIWKEQKP-  145 (541)
T ss_pred             CCccEEEEEecCCeE---EEEEecCCCCCcceeeecccccCceEecCCc--------eeEEEEecccceeeeeeccCCC-
Confidence            345899999998886   445553  34455666666655544444433        3488888877776666543322 


Q ss_pred             CCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecC----
Q 039497          536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPG----  610 (642)
Q Consensus       536 ~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~d----  610 (642)
                             .+..+..+|||+.|+..+.                   .|-+|++.+++ +...|.+.+.+..++|.-+    
T Consensus       146 -------~~~sl~is~D~~~l~~as~-------------------~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~  199 (541)
T KOG4547|consen  146 -------LVSSLCISPDGKILLTASR-------------------QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGI  199 (541)
T ss_pred             -------ccceEEEcCCCCEEEeccc-------------------eEEEEEccCceEEEEecCCCcceEEEEEEEecccc
Confidence                   4678999999998877653                   78899998877 6678888888889999877    


Q ss_pred             -CceEEeecCCCcccccce
Q 039497          611 -NQLDLGKLRLEDDIGDKL  628 (642)
Q Consensus       611 -g~~~~~~~~~~~~~~~~~  628 (642)
                       |++++++.-.+..++-+.
T Consensus       200 ~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  200 IGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             ccceeeeccccccceeEEE
Confidence             899999877775554443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.14  E-value=0.041  Score=54.58  Aligned_cols=201  Identities=9%  Similarity=-0.014  Sum_probs=111.8

Q ss_pred             CCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC--
Q 039497          286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG--  363 (642)
Q Consensus       286 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~--  363 (642)
                      ...|...-+.++++...     ..+..+|-.........++...-......|.|..-.++..+..+  .++.+.|...  
T Consensus       248 ~Ls~n~~~~nVLaSgsa-----D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D--~~V~l~D~R~~~  320 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSA-----DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYD--GTVALKDCRDPS  320 (463)
T ss_pred             HHHhccccceeEEecCC-----CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecccc--ceEEeeeccCcc
Confidence            44566666666655322     22355565544333333332222335678888776666654333  4555555542  


Q ss_pred             CCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEE
Q 039497          364 SKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC  443 (642)
Q Consensus       364 ~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  443 (642)
                      .........+.+..+.|.|.....++++      .+++.++-+++..  .     +.     ....+..+. ..+..+.+
T Consensus       321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~------tddG~v~~~D~R~--~-----~~-----~vwt~~AHd-~~ISgl~~  381 (463)
T KOG0270|consen  321 NSGKEWKFDGEVEKVAWDPHSENSFFVS------TDDGTVYYFDIRN--P-----GK-----PVWTLKAHD-DEISGLSV  381 (463)
T ss_pred             ccCceEEeccceEEEEecCCCceeEEEe------cCCceEEeeecCC--C-----CC-----ceeEEEecc-CCcceEEe
Confidence            1112222267789999999999888888      4577888777765  3     22     566666666 77888888


Q ss_pred             CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       444 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      ++.-..++.+...++.-.||.++...++.    ..-... -+.....++.|+--.++..+...       ..+.+||+.+
T Consensus       382 n~~~p~~l~t~s~d~~Vklw~~~~~~~~~----v~~~~~~~~rl~c~~~~~~~a~~la~GG~k-------~~~~vwd~~~  450 (463)
T KOG0270|consen  382 NIQTPGLLSTASTDKVVKLWKFDVDSPKS----VKEHSFKLGRLHCFALDPDVAFTLAFGGEK-------AVLRVWDIFT  450 (463)
T ss_pred             cCCCCcceeeccccceEEEEeecCCCCcc----cccccccccceeecccCCCcceEEEecCcc-------ceEEEeeccc
Confidence            88777777776544544555555444332    111111 01233445666654443333322       2478888755


Q ss_pred             C
Q 039497          523 S  523 (642)
Q Consensus       523 ~  523 (642)
                      .
T Consensus       451 ~  451 (463)
T KOG0270|consen  451 N  451 (463)
T ss_pred             C
Confidence            4

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.12  E-value=0.017  Score=56.09  Aligned_cols=198  Identities=9%  Similarity=0.034  Sum_probs=114.2

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFL  450 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l  450 (642)
                      .+-+..+.||.++++|+-..       ++-...+|.++..--     .+  .+ ++-.+..++ ...+..+.|.- |+..
T Consensus        56 ~GCiNAlqFS~N~~~L~SGG-------DD~~~~~W~~de~~~-----~k--~~-KPI~~~~~~H~SNIF~L~F~~-~N~~  119 (609)
T KOG4227|consen   56 TGCINALQFSHNDRFLASGG-------DDMHGRVWNVDELMV-----RK--TP-KPIGVMEHPHRSNIFSLEFDL-ENRF  119 (609)
T ss_pred             ccccceeeeccCCeEEeecC-------CcceeeeechHHHHh-----hc--CC-CCceeccCccccceEEEEEcc-CCee
Confidence            35677899999999887654       467888998864100     11  00 122222222 13455677765 4455


Q ss_pred             EEEeCCCCceeEEEEECCCCccccceeeCCC--CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc--eE
Q 039497          451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG--LR  526 (642)
Q Consensus       451 ~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~--~~  526 (642)
                      +|...+.  .++.+.|+.+.+.   +.....  ..+.+.+..-+|-.+.|+..+..+.        +.+||.....  ..
T Consensus       120 ~~SG~~~--~~VI~HDiEt~qs---i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~--------V~~~D~Rd~~~~~~  186 (609)
T KOG4227|consen  120 LYSGERW--GTVIKHDIETKQS---IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKL--------VSFIDNRDRQNPIS  186 (609)
T ss_pred             EecCCCc--ceeEeeeccccee---eeeecccCcccceeecccCCCCceEEEEecCce--------EEEEeccCCCCCCc
Confidence            6666543  4888999998775   333322  2246777788888777777666543        7778875432  23


Q ss_pred             EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee------eccCCCC
Q 039497          527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR------RLTWNGY  600 (642)
Q Consensus       527 ~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~lt~~~~  600 (642)
                      .+...+...       .+..+-|.|-.-.|+.+.+..+..              .||-.......+-      -|.....
T Consensus       187 ~~~~AN~~~-------~F~t~~F~P~~P~Li~~~~~~~G~--------------~~~D~R~~~~~~~~~~~~~~L~~~~~  245 (609)
T KOG4227|consen  187 LVLPANSGK-------NFYTAEFHPETPALILVNSETGGP--------------NVFDRRMQARPVYQRSMFKGLPQENT  245 (609)
T ss_pred             eeeecCCCc-------cceeeeecCCCceeEEeccccCCC--------------CceeeccccchHHhhhccccCcccch
Confidence            333333333       567788999888887776654421              4553322111111      1111122


Q ss_pred             CCCCcEEecCCceEEeecC
Q 039497          601 ENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       601 ~~~~~~~s~dg~~~~~~~~  619 (642)
                      .+.+..|+|.|..|++.+.
T Consensus       246 ~~M~~~~~~~G~Q~msiRR  264 (609)
T KOG4227|consen  246 EWMGSLWSPSGNQFMSIRR  264 (609)
T ss_pred             hhhheeeCCCCCeehhhhc
Confidence            3468899999977776543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.10  E-value=0.45  Score=49.21  Aligned_cols=350  Identities=18%  Similarity=0.174  Sum_probs=180.5

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC--ceeEeecCC---CcceE-eeCCe-EEEEEecCCCc
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN--KRVIVCERG---GWPTW-SGDST-IYFHRQADDGW  214 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~l~~~~~---~~~~w-spdg~-~~~~~~~~~g~  214 (642)
                      .....+.+++..++..+.+.            .+.+|+...+.  ...+.....   ....+ ++++. ++......++.
T Consensus        68 i~~~~~~~~~~~~~~~~~d~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  135 (466)
T COG2319          68 ITSIAFSPDGELLLSGSSDG------------TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT  135 (466)
T ss_pred             EEEEEECCCCcEEEEecCCC------------cEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence            34467888888888766433            57777777764  223322221   12233 67776 44333233554


Q ss_pred             eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCC
Q 039497          215 WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSE  294 (642)
Q Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~  294 (642)
                      ..+|.+.....        ....+..+...+..+.++|+++.++....    ....+.+|++..              ++
T Consensus       136 ~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--------------~~  189 (466)
T COG2319         136 VKLWDLSTPGK--------LIRTLEGHSESVTSLAFSPDGKLLASGSS----LDGTIKLWDLRT--------------GK  189 (466)
T ss_pred             EEEEEecCCCe--------EEEEEecCcccEEEEEECCCCCEEEecCC----CCCceEEEEcCC--------------Cc
Confidence            44444432112        34555555555667889999996666422    234677776622              01


Q ss_pred             EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE-Eee-c
Q 039497          295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT-LIK-D  372 (642)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~~-~  372 (642)
                      .+...                   ...       ........|+|++..++.....+  ..|.+++...+.... ... .
T Consensus       190 ~~~~~-------------------~~~-------~~~v~~~~~~~~~~~~~~~~~~d--~~i~~wd~~~~~~~~~~~~~~  241 (466)
T COG2319         190 PLSTL-------------------AGH-------TDPVSSLAFSPDGGLLIASGSSD--GTIRLWDLSTGKLLRSTLSGH  241 (466)
T ss_pred             eEEee-------------------ccC-------CCceEEEEEcCCcceEEEEecCC--CcEEEEECCCCcEEeeecCCC
Confidence            11110                   000       01112346778887333332223  333344666444333 122 1


Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      .......|+|++..++...       .+..+++|++..  .      ..    ....+..+. ..+....|+|++..++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~--~------~~----~~~~~~~~~-~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         242 SDSVVSSFSPDGSLLASGS-------SDGTIRLWDLRS--S------SS----LLRTLSGHS-SSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             CcceeEeECCCCCEEEEec-------CCCcEEEeeecC--C------Cc----EEEEEecCC-ccEEEEEECCCCCEEEE
Confidence            1111227999996666333       478899999865  1      20    122222222 56667799998888887


Q ss_pred             EeCCCCceeEEEEECCCCccccceeeCC--CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          453 RSGRSGHKNLFVLDAVNGEFNGDIRQLT--DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~--~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      .+.+ +.  +.+|+..++..   .....  .+...+..+.|++++..++......       ..+..|++.... .....
T Consensus       302 ~~~d-~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------~~~~~~~~~~~~-~~~~~  367 (466)
T COG2319         302 GSSD-GT--VRLWDLETGKL---LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD-------GTIRLWDLRTGK-PLKTL  367 (466)
T ss_pred             eeCC-Cc--EEEEEcCCCce---EEEeeecccCCceEEEEECCCCCEEEEeecCC-------CcEEeeecCCCc-eeEEe
Confidence            4443 43  55668776654   23333  2322355667744435555553221       225667776665 21211


Q ss_pred             cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC-CCCCCcEEec
Q 039497          531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG-YENGTPAWHP  609 (642)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~  609 (642)
                       ....       ....+.+++ . ...+.....               ...+..|+............. .......+++
T Consensus       368 -~~~~-------~~~~~~~~~-~-~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (466)
T COG2319         368 -EGHS-------NVLSVSFSP-D-GRVVSSGST---------------DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP  422 (466)
T ss_pred             -cCCc-------eEEEEEECC-C-CCEEEEecC---------------CCceEEEecccCeeeeeccCCCCcEEEEEECC
Confidence             1111       145677888 5 444441111               126777777665544333333 4556778888


Q ss_pred             CCceEEe
Q 039497          610 GNQLDLG  616 (642)
Q Consensus       610 dg~~~~~  616 (642)
                      ++.++++
T Consensus       423 ~~~~~~~  429 (466)
T COG2319         423 DGKSLAS  429 (466)
T ss_pred             CCcEEEE
Confidence            8887766

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.10  E-value=0.23  Score=53.13  Aligned_cols=140  Identities=14%  Similarity=0.078  Sum_probs=93.0

Q ss_pred             CceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497          352 LNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI  429 (642)
Q Consensus       352 ~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  429 (642)
                      ....|.++++.++....+..  ...+..+...  +..++..+.       ++.+.+|++..        +.     ....
T Consensus       309 ~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~-------d~~v~VW~~~~--------~~-----cl~s  366 (537)
T KOG0274|consen  309 RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY-------DGTVKVWDPRT--------GK-----CLKS  366 (537)
T ss_pred             CCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec-------CceEEEEEhhh--------ce-----eeee
Confidence            34678888888777666554  4445566655  777777764       56899999976        33     6677


Q ss_pred             ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC-ccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497          430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG-EFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       430 l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~  508 (642)
                      +..+. ..+..+.+... ..++-.+.+   ..|.+||+.++ +.   +..+..+...+.  .....++.|+-.+.++.  
T Consensus       367 l~gH~-~~V~sl~~~~~-~~~~Sgs~D---~~IkvWdl~~~~~c---~~tl~~h~~~v~--~l~~~~~~Lvs~~aD~~--  434 (537)
T KOG0274|consen  367 LSGHT-GRVYSLIVDSE-NRLLSGSLD---TTIKVWDLRTKRKC---IHTLQGHTSLVS--SLLLRDNFLVSSSADGT--  434 (537)
T ss_pred             ecCCc-ceEEEEEecCc-ceEEeeeec---cceEeecCCchhhh---hhhhcCCccccc--ccccccceeEecccccc--
Confidence            77776 77777766543 555544433   47899999987 54   455555544433  33445677777666654  


Q ss_pred             CCCceeEEEEeCCCCceEEeeec
Q 039497          509 NVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                            |.+||...++..+....
T Consensus       435 ------Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  435 ------IKLWDAEEGECLRTLEG  451 (537)
T ss_pred             ------EEEeecccCceeeeecc
Confidence                  99999988887766653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.06  E-value=0.27  Score=55.41  Aligned_cols=121  Identities=10%  Similarity=0.065  Sum_probs=69.8

Q ss_pred             CccEEcCCCCEEEEE--ecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          333 SFPSFSPDGGLIVFN--HDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       333 ~~~~~spdg~~l~~~--~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      ..+.|--||++++..  ....+...|.+++.++ .......  .+....+.|-|.|..++.....    ..+..+.++.-
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~----~sd~~IvffEr  273 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCK----TSDSDIVFFER  273 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhcccCcccccccceeecCCCCeEeeeeec----CCCCcEEEEec
Confidence            357899999988873  3334557888888773 2221111  3445678999999999877653    33444444433


Q ss_pred             EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497          409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN  469 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~  469 (642)
                          +      |.+-..-..+..... ..+..+.|+.++..|+..........|.+|-+..
T Consensus       274 ----N------GL~hg~f~l~~p~de-~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  274 ----N------GLRHGEFVLPFPLDE-KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ----C------CccccccccCCcccc-cchheeeecCCCCceeeeecccccceEEEEEecC
Confidence                2      211000001111111 2367799999999888754433334577776543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.04  E-value=0.058  Score=55.54  Aligned_cols=139  Identities=15%  Similarity=0.106  Sum_probs=89.5

Q ss_pred             CCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497          351 ELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD  426 (642)
Q Consensus       351 ~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  426 (642)
                      .....|+++++.+++...-..    .+.+..+.|+.+-.-| |..      ..+..+..|....         +     .
T Consensus        77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ci-yS~------~ad~~v~~~~~~~---------~-----~  135 (541)
T KOG4547|consen   77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCI-YSV------GADLKVVYILEKE---------K-----V  135 (541)
T ss_pred             cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCce-Eec------CCceeEEEEeccc---------c-----e
Confidence            446789999998888755443    3455566666555444 443      1244444444433         1     3


Q ss_pred             eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC-----CCEEEEE
Q 039497          427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK-----GDLIAFS  501 (642)
Q Consensus       427 ~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd-----G~~l~~~  501 (642)
                      ...+-......+..+.++|||+.++.++.     +|-++|+.+++.   +..++.+...+..++|..+     |++++-.
T Consensus       136 ~~~~~~~~~~~~~sl~is~D~~~l~~as~-----~ik~~~~~~kev---v~~ftgh~s~v~t~~f~~~~~g~~G~~vLss  207 (541)
T KOG4547|consen  136 IIRIWKEQKPLVSSLCISPDGKILLTASR-----QIKVLDIETKEV---VITFTGHGSPVRTLSFTTLIDGIIGKYVLSS  207 (541)
T ss_pred             eeeeeccCCCccceEEEcCCCCEEEeccc-----eEEEEEccCceE---EEEecCCCcceEEEEEEEeccccccceeeec
Confidence            33333332246678899999999887763     899999999997   7888988888888888776     6665544


Q ss_pred             ecCCCCCCCCceeEEEEeCCCC
Q 039497          502 SNRHNPDNVEAFSLYVIKPDGS  523 (642)
Q Consensus       502 ~~~~~~~~~~~~~l~~~d~~~~  523 (642)
                      ..-.     ....+|+.+-+.+
T Consensus       208 a~~~-----r~i~~w~v~~~~k  224 (541)
T KOG4547|consen  208 AAAE-----RGITVWVVEKEDK  224 (541)
T ss_pred             cccc-----cceeEEEEEcccc
Confidence            4332     3445666666443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=96.97  E-value=0.03  Score=58.60  Aligned_cols=194  Identities=12%  Similarity=0.097  Sum_probs=117.6

Q ss_pred             eeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ..+.++.+.+.+......  ...+.++..-.++. ++-.+       -+.+..+|.+..               ....+.
T Consensus        81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgS-------WD~TakvW~~~~---------------l~~~l~  137 (745)
T KOG0301|consen   81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGS-------WDSTAKVWRIGE---------------LVYSLQ  137 (745)
T ss_pred             ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecc-------cccceEEecchh---------------hhcccC
Confidence            566677777766544333  34455665555555 44444       378899999854               334455


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE  511 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~  511 (642)
                      .+. ..++.+..-|+++++ ..+   .+..|.+|.-  |+.   ++.+..+...+.++++-+++.+ +-.++++.     
T Consensus       138 gH~-asVWAv~~l~e~~~v-Tgs---aDKtIklWk~--~~~---l~tf~gHtD~VRgL~vl~~~~f-lScsNDg~-----  201 (745)
T KOG0301|consen  138 GHT-ASVWAVASLPENTYV-TGS---ADKTIKLWKG--GTL---LKTFSGHTDCVRGLAVLDDSHF-LSCSNDGS-----  201 (745)
T ss_pred             Ccc-hheeeeeecCCCcEE-ecc---CcceeeeccC--Cch---hhhhccchhheeeeEEecCCCe-EeecCCce-----
Confidence            555 677777777888443 333   4457888875  443   5777777778888899888764 44444443     


Q ss_pred             ceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497          512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG  591 (642)
Q Consensus       512 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  591 (642)
                         |.+|+++++.+....  ++..       .++.+....++..|+.+..+...               +||..+   .-
T Consensus       202 ---Ir~w~~~ge~l~~~~--ghtn-------~vYsis~~~~~~~Ivs~gEDrtl---------------riW~~~---e~  251 (745)
T KOG0301|consen  202 ---IRLWDLDGEVLLEMH--GHTN-------FVYSISMALSDGLIVSTGEDRTL---------------RIWKKD---EC  251 (745)
T ss_pred             ---EEEEeccCceeeeee--ccce-------EEEEEEecCCCCeEEEecCCceE---------------EEeecC---ce
Confidence               999999776655443  4444       56677766777767666655432               555433   22


Q ss_pred             eeeccCCCCCCCCcEEecCCceEEe
Q 039497          592 LRRLTWNGYENGTPAWHPGNQLDLG  616 (642)
Q Consensus       592 ~~~lt~~~~~~~~~~~s~dg~~~~~  616 (642)
                      .+.|+-....+.+..+-++|..++.
T Consensus       252 ~q~I~lPttsiWsa~~L~NgDIvvg  276 (745)
T KOG0301|consen  252 VQVITLPTTSIWSAKVLLNGDIVVG  276 (745)
T ss_pred             EEEEecCccceEEEEEeeCCCEEEe
Confidence            3344433334455555555555543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.93  E-value=0.38  Score=45.49  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=27.8

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK  371 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~  371 (642)
                      +..+||||+..|||...   .+.|.++|+.+.+...+..
T Consensus        47 Rkl~WSpD~tlLa~a~S---~G~i~vfdl~g~~lf~I~p   82 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAES---TGTIRVFDLMGSELFVIPP   82 (282)
T ss_pred             eEEEECCCCcEEEEEcC---CCeEEEEecccceeEEcCc
Confidence            35689999999999754   5788888998877665543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=96.93  E-value=0.12  Score=54.98  Aligned_cols=120  Identities=16%  Similarity=0.083  Sum_probs=76.2

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      .+.+..+.++|=+..++.+.       .+-.++||.-..  .     ..     ....+.... ..+..++|||-.-.++
T Consensus       398 ~g~v~~v~~nPF~~k~fls~-------gDW~vriWs~~~--~-----~~-----Pl~~~~~~~-~~v~~vaWSptrpavF  457 (555)
T KOG1587|consen  398 IGPVYAVSRNPFYPKNFLSV-------GDWTVRIWSEDV--I-----AS-----PLLSLDSSP-DYVTDVAWSPTRPAVF  457 (555)
T ss_pred             CcceEeeecCCCccceeeee-------ccceeEeccccC--C-----CC-----cchhhhhcc-ceeeeeEEcCcCceEE
Confidence            55677888888777776665       378899998764  1     11     222222222 4477899999776666


Q ss_pred             EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      ++.+.+  +.|++||+.-... .++..+.-.........|++.|+.|+.....+.        ++++++..
T Consensus       458 ~~~d~~--G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~--------~~~~~l~~  517 (555)
T KOG1587|consen  458 ATVDGD--GNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT--------THILKLSE  517 (555)
T ss_pred             EEEcCC--Cceehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCc--------EEEEEcCc
Confidence            666544  4788888864332 112222222234456689999999988887765        88888753

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.89  E-value=0.14  Score=57.51  Aligned_cols=197  Identities=15%  Similarity=0.215  Sum_probs=112.3

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe---
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF---  410 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~---  410 (642)
                      +.|-.|+..|+++..   .+.|.++|.++.....+.. ..++..+.||||++.+++++..       .++.+..-++   
T Consensus        74 ~~fl~d~~~i~v~~~---~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~-------~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   74 VQFLADTNSICVITA---LGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGR-------QTLLFMTKDFEPI  143 (1265)
T ss_pred             EEEecccceEEEEec---CCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCC-------cEEEEEeccccch
Confidence            356667777777643   3667777877776555544 7789999999999999998752       1111111100   


Q ss_pred             ---------ecCCC---CCCCCCccccceEEccccC--------------------CCCccCcEECCCCCeEEEEeC--C
Q 039497          411 ---------QLDPS---DDNNREEIPCDVKILTKEE--------------------TGNNAFPSCSPDGKFLVFRSG--R  456 (642)
Q Consensus       411 ---------~~~~~---~~~~~~~~~~~~~~l~~~~--------------------~~~~~~~~~SpDg~~l~~~~~--~  456 (642)
                               ....+   -..|+     +..++....                    ......+.|--||++++....  .
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGr-----keTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~  218 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGR-----KETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE  218 (1265)
T ss_pred             hccccccccccccccceecccc-----cceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence                     00000   01122     111111000                    012234889999999987542  3


Q ss_pred             CCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee-cCCC
Q 039497          457 SGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV-AGPE  534 (642)
Q Consensus       457 ~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~  534 (642)
                      .+...|-+||-+ |..    ..... ..+....++|-|.|.+|+.......     ...|..+..+|-....... ...+
T Consensus       219 ~~~RkirV~drE-g~L----ns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-----d~~IvffErNGL~hg~f~l~~p~d  288 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE-GAL----NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-----DSDIVFFERNGLRHGEFVLPFPLD  288 (1265)
T ss_pred             CCceeEEEeccc-chh----hcccCcccccccceeecCCCCeEeeeeecCC-----CCcEEEEecCCccccccccCCccc
Confidence            344678888877 552    22222 2233456799999999887776653     2257777766533322211 1111


Q ss_pred             CCCCcccccccceEEcCCCCEEEEEEec
Q 039497          535 GSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       535 ~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      .      ..+..+.|+.++..|+.....
T Consensus       289 e------~~ve~L~Wns~sdiLAv~~~~  310 (1265)
T KOG1920|consen  289 E------KEVEELAWNSNSDILAVVTSN  310 (1265)
T ss_pred             c------cchheeeecCCCCceeeeecc
Confidence            1      136789999999988875433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.88  E-value=0.12  Score=54.50  Aligned_cols=266  Identities=15%  Similarity=0.111  Sum_probs=134.7

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcc---cccCC---ccceeeCCCCCccccceeecCCcEEEEEEeccCCce
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLE---FLGFP---IAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNF  268 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~---~~~~~---~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~  268 (642)
                      ...|....-.+... +.+|-..+.+++.++...   .+..+   .--+.+.++...+..+.|..+.++|-.     +...
T Consensus        19 c~~WNke~gyIAcg-G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt-----SDt~   92 (1189)
T KOG2041|consen   19 CAEWNKESGYIACG-GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT-----SDTS   92 (1189)
T ss_pred             EEEEcccCCeEEec-cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc-----cCCC
Confidence            36888776666666 678877787776655311   00000   000112233334444445444443333     1222


Q ss_pred             eeEEEEEee----------cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC---CceeEEeeeCCCcc
Q 039497          269 RHIEIYDLT----------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP---VKELRMLRLNGSFP  335 (642)
Q Consensus       269 ~~i~~~d~~----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  335 (642)
                      .-|-+|=+-          ......+.+..|..||++|..+-++|..      +  ...+++.   .+.+..  ..-.+.
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav------I--VGsvdGNRIwgKeLkg--~~l~hv  162 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV------I--VGSVDGNRIWGKELKG--QLLAHV  162 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE------E--EEeeccceecchhcch--heccce
Confidence            355566551          1223345577899999999998777762      1  1111111   011110  111366


Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------------cCCceeeee--------ecCCCEEEEEEcCC
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------------DRTAFYNSW--------SPTEKHVIYTSTGP  394 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------------~~~~~~~~~--------spdg~~l~~~~~~~  394 (642)
                      .||+|.+.++|...   ++.+.++|..+.-.+.+..             ...+..+.|        -||.-.|+++-.  
T Consensus       163 ~ws~D~~~~Lf~~a---nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~--  237 (1189)
T KOG2041|consen  163 LWSEDLEQALFKKA---NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA--  237 (1189)
T ss_pred             eecccHHHHHhhhc---CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc--
Confidence            89999998888543   2456666655542222111             111112222        235555555432  


Q ss_pred             CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC------ceeEEEEECC
Q 039497          395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG------HKNLFVLDAV  468 (642)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g------~~~l~~~d~~  468 (642)
                           ++..+|.+-..  +      .     .+..+..+  ..+....|+++|..|+.......      ...|..+..-
T Consensus       238 -----nGr~QiMR~eN--D------~-----~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~  297 (1189)
T KOG2041|consen  238 -----NGRMQIMRSEN--D------P-----EPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY  297 (1189)
T ss_pred             -----CceehhhhhcC--C------C-----CCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence                 45555554433  2      1     22222222  45667899999999998765321      1244445444


Q ss_pred             CCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497          469 NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       469 ~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                       |+.   +..+......+..+.|--.|-+|+.+.+.-
T Consensus       298 -G~i---~gtlkvpg~~It~lsWEg~gLriA~Avdsf  330 (1189)
T KOG2041|consen  298 -GHI---VGTLKVPGSCITGLSWEGTGLRIAIAVDSF  330 (1189)
T ss_pred             -hhh---eEEEecCCceeeeeEEcCCceEEEEEecce
Confidence             444   444444444566777777777777766543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.84  E-value=0.45  Score=44.98  Aligned_cols=66  Identities=18%  Similarity=0.199  Sum_probs=39.6

Q ss_pred             CceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC---ceeEeecCCC-----cceEeeCCeEEEEEecCCCce
Q 039497          144 SPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN---KRVIVCERGG-----WPTWSGDSTIYFHRQADDGWW  215 (642)
Q Consensus       144 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~l~~~~~~-----~~~wspdg~~~~~~~~~~g~~  215 (642)
                      +.+.++|||.||...+.             .|.+....+.-   ..+...+...     .++||||+.+++.+ ...|+.
T Consensus         2 ~~~~~~~Gk~lAi~qd~-------------~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a-~S~G~i   67 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQ-------------CIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYA-ESTGTI   67 (282)
T ss_pred             ceeecCCCcEEEEEecc-------------EEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEE-cCCCeE
Confidence            35789999999988642             34454444331   1222223332     35999999888887 456744


Q ss_pred             EEEEEecCCC
Q 039497          216 SIFRVSFPEN  225 (642)
Q Consensus       216 ~l~~~~~~~~  225 (642)
                      .+|  |+.+.
T Consensus        68 ~vf--dl~g~   75 (282)
T PF15492_consen   68 RVF--DLMGS   75 (282)
T ss_pred             EEE--ecccc
Confidence            444  66654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.83  E-value=0.049  Score=56.69  Aligned_cols=204  Identities=18%  Similarity=0.229  Sum_probs=101.1

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE-EEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA-RVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~-~~~~~  411 (642)
                      ..+.++|+|+.++...  ++...|+.  ..+..  .. ..+....+.|++.++ +++..       ....+.|+ .++. 
T Consensus        36 ~~ls~npngr~v~V~g--~geY~iyt--~~~~r--~k-~~G~g~~~vw~~~n~-yAv~~-------~~~~I~I~kn~~~-   99 (443)
T PF04053_consen   36 QSLSHNPNGRFVLVCG--DGEYEIYT--ALAWR--NK-AFGSGLSFVWSSRNR-YAVLE-------SSSTIKIYKNFKN-   99 (443)
T ss_dssp             SEEEE-TTSSEEEEEE--TTEEEEEE--TTTTE--EE-EEEE-SEEEE-TSSE-EEEE--------TTS-EEEEETTEE-
T ss_pred             eeEEECCCCCEEEEEc--CCEEEEEE--ccCCc--cc-ccCceeEEEEecCcc-EEEEE-------CCCeEEEEEcCcc-
Confidence            4568899999988854  34444444  22222  21 134556789999666 44443       14566664 2322 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                       .            ..+.+....  .... -|.  |..|...+..    .|.++|.++++.   +..+.-.  .+..+.|
T Consensus       100 -~------------~~k~i~~~~--~~~~-If~--G~LL~~~~~~----~i~~yDw~~~~~---i~~i~v~--~vk~V~W  152 (443)
T PF04053_consen  100 -E------------VVKSIKLPF--SVEK-IFG--GNLLGVKSSD----FICFYDWETGKL---IRRIDVS--AVKYVIW  152 (443)
T ss_dssp             --------------TT-----SS---EEE-EE---SSSEEEEETT----EEEEE-TTT--E---EEEESS---E-EEEEE
T ss_pred             -c------------cceEEcCCc--ccce-EEc--CcEEEEECCC----CEEEEEhhHcce---eeEEecC--CCcEEEE
Confidence             1            212222211  1111 122  7777776642    599999999886   6666643  2578899


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCC------------ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS------------GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT  559 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~  559 (642)
                      |++|+++++.+.+.         +|+++.+-.            ....+..-.  .       .+.+..|--|  .++|+
T Consensus       153 s~~g~~val~t~~~---------i~il~~~~~~~~~~~~~g~e~~f~~~~E~~--~-------~IkSg~W~~d--~fiYt  212 (443)
T PF04053_consen  153 SDDGELVALVTKDS---------IYILKYNLEAVAAIPEEGVEDAFELIHEIS--E-------RIKSGCWVED--CFIYT  212 (443)
T ss_dssp             -TTSSEEEEE-S-S---------EEEEEE-HHHHHHBTTTB-GGGEEEEEEE---S---------SEEEEETT--EEEEE
T ss_pred             ECCCCEEEEEeCCe---------EEEEEecchhcccccccCchhceEEEEEec--c-------eeEEEEEEcC--EEEEE
Confidence            99999999998765         677665444            344444311  1       4677888766  66666


Q ss_pred             EecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC-CceEEeecC
Q 039497          560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG-NQLDLGKLR  619 (642)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d-g~~~~~~~~  619 (642)
                      ...                  +|..  +-+|+...+..-....+-+.+.+. ++.++-.++
T Consensus       213 T~~------------------~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~  253 (443)
T PF04053_consen  213 TSN------------------HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRD  253 (443)
T ss_dssp             -TT------------------EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT
T ss_pred             cCC------------------eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECC
Confidence            532                  5655  344454444443334455566663 344444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.82  E-value=0.49  Score=45.12  Aligned_cols=199  Identities=14%  Similarity=0.131  Sum_probs=112.1

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ....|+|+.+.|+.+.  +....|.-++.+|.-.+.+..  -.....+.|.-+|++++.-.       .+..+.+..++.
T Consensus        89 S~LTynp~~rtLFav~--n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE-------R~~~l~~~~vd~  159 (316)
T COG3204          89 SSLTYNPDTRTLFAVT--NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE-------RDRALYLFTVDA  159 (316)
T ss_pred             cceeeCCCcceEEEec--CCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh-------hcceEEEEEEcC
Confidence            5678999999877765  445788888988877766655  45566778887776554332       255566666654


Q ss_pred             ecCCCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC---
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP---  483 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~---  483 (642)
                        +      +..+..+...++-+.    ......++|.|..+.++++..+ ....||.++......   ...+...+   
T Consensus       160 --~------t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr-~P~~I~~~~~~~~~l---~~~~~~~~~~~  227 (316)
T COG3204         160 --D------TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER-NPIGIFEVTQSPSSL---SVHASLDPTAD  227 (316)
T ss_pred             --C------ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc-CCcEEEEEecCCccc---ccccccCcccc
Confidence              2      211111111221111    1234568999999999988876 456788887432111   01111111   


Q ss_pred             -----CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEE
Q 039497          484 -----WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLL  557 (642)
Q Consensus       484 -----~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~  557 (642)
                           ..+.+..|.+....|++.+....       .|...|+++.-...+... +..+. ..+-++...++...+|. ||
T Consensus       228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr-------~l~Evd~~G~~~~~lsL~~g~~gL-~~dipqaEGiamDd~g~-lY  298 (316)
T COG3204         228 RDLFVLDVSGLEFNAITNSLLVLSDESR-------RLLEVDLSGEVIELLSLTKGNHGL-SSDIPQAEGIAMDDDGN-LY  298 (316)
T ss_pred             cceEeeccccceecCCCCcEEEEecCCc-------eEEEEecCCCeeeeEEeccCCCCC-cccCCCcceeEECCCCC-EE
Confidence                 13456678876666777766543       378888887654444322 11110 00111344566666665 66


Q ss_pred             EEEe
Q 039497          558 FTAN  561 (642)
Q Consensus       558 ~~~~  561 (642)
                      .++.
T Consensus       299 IvSE  302 (316)
T COG3204         299 IVSE  302 (316)
T ss_pred             EEec
Confidence            5553

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.76  E-value=0.45  Score=45.35  Aligned_cols=188  Identities=17%  Similarity=0.143  Sum_probs=100.0

Q ss_pred             cCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497          338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD  416 (642)
Q Consensus       338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  416 (642)
                      .++++++++..   ....|+.+|..+++...... ...+.... ..++..+++...       ++  .++.++.  .   
T Consensus        33 ~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~-------~~--~l~~~d~--~---   94 (238)
T PF13360_consen   33 VPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTS-------DG--SLYALDA--K---   94 (238)
T ss_dssp             EEETTEEEEEE---TTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEET-------TS--EEEEEET--T---
T ss_pred             EEeCCEEEEEc---CCCEEEEEECCCCCEEEEeecccccccee-eecccccccccc-------ee--eeEeccc--C---
Confidence            33455555542   45789999987776543333 33323322 345666766652       23  5666653  2   


Q ss_pred             CCCCCccccceEE--ccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC--CCCCCc------
Q 039497          417 DNNREEIPCDVKI--LTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL--TDGPWI------  485 (642)
Q Consensus       417 ~~~~~~~~~~~~~--l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l--~~~~~~------  485 (642)
                        +|+    ....  ....+ ...........+++.+++...   ...|+.+|+++|+.   +...  ......      
T Consensus        95 --tG~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~  162 (238)
T PF13360_consen   95 --TGK----VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKL---LWKYPVGEPRGSSPISSF  162 (238)
T ss_dssp             --TSC----EEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---CSEEEEEETTTTEE---EEEEESSTT-SS--EEEE
T ss_pred             --Ccc----eeeeeccccccccccccccCceEecCEEEEEec---cCcEEEEecCCCcE---EEEeecCCCCCCcceeee
Confidence              332    2222  11111 011223344445777777763   34899999999985   2222  211111      


Q ss_pred             ---ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          486 ---DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       486 ---~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                         ...+.++ +| .+++....+.        ++.+|+.+++.. ... ....         .......++..|++.+.+
T Consensus       163 ~~~~~~~~~~-~~-~v~~~~~~g~--------~~~~d~~tg~~~-w~~-~~~~---------~~~~~~~~~~~l~~~~~~  221 (238)
T PF13360_consen  163 SDINGSPVIS-DG-RVYVSSGDGR--------VVAVDLATGEKL-WSK-PISG---------IYSLPSVDGGTLYVTSSD  221 (238)
T ss_dssp             TTEEEEEECC-TT-EEEEECCTSS--------EEEEETTTTEEE-EEE-CSS----------ECECEECCCTEEEEEETT
T ss_pred             cccccceEEE-CC-EEEEEcCCCe--------EEEEECCCCCEE-EEe-cCCC---------ccCCceeeCCEEEEEeCC
Confidence               1222333 44 6666655442        666699988744 332 2222         122257888888888733


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497          563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR  593 (642)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  593 (642)
                      +                 .|+.+|+.+++..
T Consensus       222 ~-----------------~l~~~d~~tG~~~  235 (238)
T PF13360_consen  222 G-----------------RLYALDLKTGKVV  235 (238)
T ss_dssp             T-----------------EEEEEETTTTEEE
T ss_pred             C-----------------EEEEEECCCCCEE
Confidence            2                 8999999988754

...

>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.49  Score=53.15  Aligned_cols=109  Identities=14%  Similarity=0.099  Sum_probs=68.8

Q ss_pred             eeEecCCCEEE-EEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497          489 PSWSPKGDLIA-FSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM  566 (642)
Q Consensus       489 ~~~spdG~~l~-~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~  566 (642)
                      +.++.|+.... +......    +..++..+....+ ....++...+..        ..-+.++.+.++++|.+..... 
T Consensus       345 ~~~~~d~~~~~~~~~~~~~----~~~hi~~~~~~~~~~~~~lt~g~w~v--------~~i~~~~~~~~~i~f~~~~~~~-  411 (755)
T KOG2100|consen  345 PVFSSDGSSYLKVDSVSDG----GYNHIAYLKLSNGSEPRMLTSGNWEV--------TSILGYDKDSNRIYFDAYEEDP-  411 (755)
T ss_pred             ceEeecCCceeEEEeeccC----CEEEEEEEEcCCCCccccccccceEE--------EEeccccCCCceEEEEecCCCC-
Confidence            56888874444 4443332    2677777777666 555555533322        1234566899999999877533 


Q ss_pred             cCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC----CCCCcEEecCCceEEeecCCC
Q 039497          567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY----ENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~----~~~~~~~s~dg~~~~~~~~~~  621 (642)
                                 ...+||.+++.......++-...    ...+..+++..++++..-...
T Consensus       412 -----------~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP  459 (755)
T KOG2100|consen  412 -----------SERHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGP  459 (755)
T ss_pred             -----------CceEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEEccCC
Confidence                       24599999999888777776543    334666777778776655444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.73  E-value=0.011  Score=58.85  Aligned_cols=172  Identities=9%  Similarity=0.053  Sum_probs=108.9

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      ...|-...+++|.    ..+..+|+||-.|.+.-.+.....+..+.|-|- .+|+.+.      ...+.+...++..   
T Consensus       175 Dv~~LHneq~~AV----AQK~y~yvYD~~GtElHClk~~~~v~rLeFLPy-HfLL~~~------~~~G~L~Y~DVS~---  240 (545)
T KOG1272|consen  175 DVTFLHNEQFFAV----AQKKYVYVYDNNGTELHCLKRHIRVARLEFLPY-HFLLVAA------SEAGFLKYQDVST---  240 (545)
T ss_pred             hhhhhcchHHHHh----hhhceEEEecCCCcEEeehhhcCchhhhcccch-hheeeec------ccCCceEEEeech---
Confidence            3355555566666    335789999998888777766667778888885 3444443      2356666667765   


Q ss_pred             CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEec
Q 039497          414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP  493 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp  493 (642)
                           |+     .+..+.... +....+.-.|-+ .|+-...  ....+-+|.....+.   +..|..+.+.+.++++.+
T Consensus       241 -----Gk-----lVa~~~t~~-G~~~vm~qNP~N-aVih~Gh--snGtVSlWSP~skeP---LvKiLcH~g~V~siAv~~  303 (545)
T KOG1272|consen  241 -----GK-----LVASIRTGA-GRTDVMKQNPYN-AVIHLGH--SNGTVSLWSPNSKEP---LVKILCHRGPVSSIAVDR  303 (545)
T ss_pred             -----hh-----hhHHHHccC-CccchhhcCCcc-ceEEEcC--CCceEEecCCCCcch---HHHHHhcCCCcceEEECC
Confidence                 33     333333333 334444445543 2333433  344788888887776   777777888999999999


Q ss_pred             CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCC
Q 039497          494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG  553 (642)
Q Consensus       494 dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg  553 (642)
                      +|++++.++.+..        +.+||+..-. +..+... ..       ....++||.-|
T Consensus       304 ~G~YMaTtG~Dr~--------~kIWDlR~~~-ql~t~~t-p~-------~a~~ls~Sqkg  346 (545)
T KOG1272|consen  304 GGRYMATTGLDRK--------VKIWDLRNFY-QLHTYRT-PH-------PASNLSLSQKG  346 (545)
T ss_pred             CCcEEeecccccc--------eeEeeecccc-ccceeec-CC-------Ccccccccccc
Confidence            9999998887764        8999997543 2122111 11       34667888666

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.66  E-value=1  Score=46.77  Aligned_cols=48  Identities=15%  Similarity=0.223  Sum_probs=28.6

Q ss_pred             eEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEecCCCceEEEEEecCCCc
Q 039497          174 DIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL  226 (642)
Q Consensus       174 ~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~  226 (642)
                      .|+.+|.++|+..--....+   ..|... ++.+++..  .+|  .|+.+|..+|+
T Consensus       131 ~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~--~~g--~l~ald~~tG~  181 (394)
T PRK11138        131 QVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHT--SNG--MLQALNESDGA  181 (394)
T ss_pred             EEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEEC--CCC--EEEEEEccCCC
Confidence            68889988887543332222   234333 45555543  234  78999998884

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.64  E-value=0.18  Score=51.79  Aligned_cols=168  Identities=14%  Similarity=0.153  Sum_probs=91.0

Q ss_pred             CccCcEECCCCCeEEEEeC---------CCCceeEEEEECCC--CccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497          437 NNAFPSCSPDGKFLVFRSG---------RSGHKNLFVLDAVN--GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~---------~~g~~~l~~~d~~~--g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      ....++|.++|+.++....         ......|++++-.+  |+. .+.+.+.........+.+.++|  |+++... 
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~-d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-   90 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY-DKSNVFAEELSMVTGLAVAVGG--VYVATPP-   90 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc-ceeEEeecCCCCccceeEecCC--EEEeCCC-
Confidence            3456789999985544321         11122787776542  432 1123444433345678899988  5555432 


Q ss_pred             CCCCCCceeEEEE-eCCCC-----ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc--ccCCC-CCCCCC
Q 039497          506 NPDNVEAFSLYVI-KPDGS-----GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV--MAEPV-SWPNQF  576 (642)
Q Consensus       506 ~~~~~~~~~l~~~-d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~--~~~~~-~~~~~~  576 (642)
                              .|+++ |.++.     +.+.+.. +....+.........+.|.|||+ ||++....+.  ...+. +.....
T Consensus        91 --------~i~~~~d~~gdg~ad~~~~~l~~-~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR02604        91 --------DILFLRDKDGDDKADGEREVLLS-GFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQ  160 (367)
T ss_pred             --------eEEEEeCCCCCCCCCCccEEEEE-ccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCccc
Confidence                    27766 44331     3333432 11110000001356789999996 6665442211  00000 000011


Q ss_pred             CCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeec
Q 039497          577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       577 ~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                      ...+.|++++.++++...+.........++|+++|++|++..
T Consensus       161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence            123589999999988877776555567899999999987753

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=96.61  E-value=0.21  Score=51.81  Aligned_cols=173  Identities=17%  Similarity=0.147  Sum_probs=88.9

Q ss_pred             CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC----C-CCCcccceeEecCC------CEEEEEecC
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT----D-GPWIDTMPSWSPKG------DLIAFSSNR  504 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~----~-~~~~~~~~~~spdG------~~l~~~~~~  504 (642)
                      ...+.++|.|||+.|+... ..  ..|++++..++.. ..+..+.    . .......++++||=      ++||+....
T Consensus        30 ~~Pw~maflPDG~llVtER-~~--G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~  105 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTER-AT--GKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY  105 (454)
T ss_pred             CCceEEEEcCCCeEEEEEe-cC--CEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence            4566789999996554332 12  3788888765542 0011111    1 22334566888763      456555432


Q ss_pred             CCCCC--CCceeEEEEeCCCC-----ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc----------c
Q 039497          505 HNPDN--VEAFSLYVIKPDGS-----GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM----------A  567 (642)
Q Consensus       505 ~~~~~--~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~----------~  567 (642)
                      .....  .....|.++.++..     ..+.|....... .   ...-..+.|.|||+ ||++..+.+..          .
T Consensus       106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-~---~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~~~~~~a  180 (454)
T TIGR03606       106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-N---DHNGGRLVFGPDGK-IYYTIGEQGRNQGANFFLPNQA  180 (454)
T ss_pred             cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-C---CcCCceEEECCCCc-EEEEECCCCCCCcccccCcchh
Confidence            21100  02456888776522     122332211000 0   01235789999997 77766554321          0


Q ss_pred             CCCCCC------CCCCCCCcEEEEEcCCCce-----------eeccCCCCCCCCcEEecCCceEEee
Q 039497          568 EPVSWP------NQFQPYGDLYVVKLDGSGL-----------RRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       568 ~~~~~~------~~~~~~~~l~~~~~~~~~~-----------~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      |..+..      ..-...+.|.+++.++..+           ...+..-.+...++|.|+|+++++.
T Consensus       181 Q~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e  247 (454)
T TIGR03606       181 QHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASE  247 (454)
T ss_pred             ccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEEe
Confidence            100000      0112356899999887532           1222222345688999999988765

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.57  E-value=0.71  Score=48.20  Aligned_cols=146  Identities=16%  Similarity=0.203  Sum_probs=90.1

Q ss_pred             CceeEEEEECCCCCeeEEee---cCCceeeeeecC-CCEEEEEEcCCCcccCCC--eEEEEEEEeecCCCCCCCCCcccc
Q 039497          352 LNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPT-EKHVIYTSTGPIFQSERA--TVQIARVSFQLDPSDDNNREEIPC  425 (642)
Q Consensus       352 ~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~  425 (642)
                      .+.+|.++...+++...+..   ......+.||-. ...+..+... .-..+..  ...+|.+..  +      +-+ .-
T Consensus       182 draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s-~s~~g~~~~d~ciYE~~r--~------klq-rv  251 (545)
T PF11768_consen  182 DRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQS-ISVKGEPSADSCIYECSR--N------KLQ-RV  251 (545)
T ss_pred             hhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEe-cCCCCCceeEEEEEEeec--C------cee-EE
Confidence            45688888888887666654   556677888874 4444444321 1111222  233444433  1      100 00


Q ss_pred             ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497          426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      ....+.-.  ..+...+++|+.++++..-.+   ..|.+||...+.     ...+........++|+|+|..+++.+..+
T Consensus       252 svtsipL~--s~v~~ca~sp~E~kLvlGC~D---gSiiLyD~~~~~-----t~~~ka~~~P~~iaWHp~gai~~V~s~qG  321 (545)
T PF11768_consen  252 SVTSIPLP--SQVICCARSPSEDKLVLGCED---GSIILYDTTRGV-----TLLAKAEFIPTLIAWHPDGAIFVVGSEQG  321 (545)
T ss_pred             EEEEEecC--CcceEEecCcccceEEEEecC---CeEEEEEcCCCe-----eeeeeecccceEEEEcCCCcEEEEEcCCc
Confidence            11122222  356677999999999887743   379999987654     55555555667789999999888888776


Q ss_pred             CCCCCCceeEEEEeCCCCce
Q 039497          506 NPDNVEAFSLYVIKPDGSGL  525 (642)
Q Consensus       506 ~~~~~~~~~l~~~d~~~~~~  525 (642)
                      .        |..+|+.-+..
T Consensus       322 e--------lQ~FD~ALspi  333 (545)
T PF11768_consen  322 E--------LQCFDMALSPI  333 (545)
T ss_pred             e--------EEEEEeecCcc
Confidence            4        89999865543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.41  E-value=0.86  Score=42.92  Aligned_cols=49  Identities=14%  Similarity=0.069  Sum_probs=35.8

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-CCccccceeecCCc
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-GVHCFTPAAFHDGK  255 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpdG~  255 (642)
                      ++-+|||.+.|..   +++..|-++|..+|        +.+++.-. +..-+.+.+.|||.
T Consensus        67 vapapdG~VWft~---qg~gaiGhLdP~tG--------ev~~ypLg~Ga~Phgiv~gpdg~  116 (353)
T COG4257          67 VAPAPDGAVWFTA---QGTGAIGHLDPATG--------EVETYPLGSGASPHGIVVGPDGS  116 (353)
T ss_pred             cccCCCCceEEec---CccccceecCCCCC--------ceEEEecCCCCCCceEEECCCCC
Confidence            4667899999887   45558889999999        56666443 54555667788886

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=96.41  E-value=0.26  Score=52.80  Aligned_cols=179  Identities=11%  Similarity=0.034  Sum_probs=107.8

Q ss_pred             ceeEEEEECCCCCeeEEeecCCceee-eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          353 NAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~~~~~~~~-~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ...+.++|..+++....... ....+ ...-....++-.+       .+..+++|++..        +.     ....+.
T Consensus       270 D~t~rvWd~~sg~C~~~l~g-h~stv~~~~~~~~~~~sgs-------~D~tVkVW~v~n--------~~-----~l~l~~  328 (537)
T KOG0274|consen  270 DKTERVWDCSTGECTHSLQG-HTSSVRCLTIDPFLLVSGS-------RDNTVKVWDVTN--------GA-----CLNLLR  328 (537)
T ss_pred             CCcEEeEecCCCcEEEEecC-CCceEEEEEccCceEeecc-------CCceEEEEeccC--------cc-----eEEEec
Confidence            35677778888887666552 22222 2222222233222       378999999976        22     444444


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE  511 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~  511 (642)
                      .+. ..+..+...  +..++..+.+ +  .|-+|++.+++.   ++.|..+...+..+.+.+. ..++-.+.+..     
T Consensus       329 ~h~-~~V~~v~~~--~~~lvsgs~d-~--~v~VW~~~~~~c---l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-----  393 (537)
T KOG0274|consen  329 GHT-GPVNCVQLD--EPLLVSGSYD-G--TVKVWDPRTGKC---LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-----  393 (537)
T ss_pred             ccc-ccEEEEEec--CCEEEEEecC-c--eEEEEEhhhcee---eeeecCCcceEEEEEecCc-ceEEeeeeccc-----
Confidence            343 666666665  6667666643 3  788888889988   8888888887777766654 56666665543     


Q ss_pred             ceeEEEEeCCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          512 AFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       512 ~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                         |.+||+.++ +..... .++..       .+  -.+...++.|+-.+.++                 .|.+||...+
T Consensus       394 ---IkvWdl~~~~~c~~tl-~~h~~-------~v--~~l~~~~~~Lvs~~aD~-----------------~Ik~WD~~~~  443 (537)
T KOG0274|consen  394 ---IKVWDLRTKRKCIHTL-QGHTS-------LV--SSLLLRDNFLVSSSADG-----------------TIKLWDAEEG  443 (537)
T ss_pred             ---eEeecCCchhhhhhhh-cCCcc-------cc--cccccccceeEeccccc-----------------cEEEeecccC
Confidence               999999887 332221 12222       12  33455667676555543                 6777787776


Q ss_pred             ceeeccC
Q 039497          591 GLRRLTW  597 (642)
Q Consensus       591 ~~~~lt~  597 (642)
                      +..+...
T Consensus       444 ~~~~~~~  450 (537)
T KOG0274|consen  444 ECLRTLE  450 (537)
T ss_pred             ceeeeec
Confidence            6444443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=96.40  E-value=0.78  Score=42.22  Aligned_cols=129  Identities=12%  Similarity=0.085  Sum_probs=76.7

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeee-ecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSW-SPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      .+...|..+.|+|..   +...+|.+|+++++.++...  ...++.++- +.+++ |+...       +++.+++|+..+
T Consensus       119 am~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~-------EDGtvRvWd~kt  187 (325)
T KOG0649|consen  119 AMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGA-------EDGTVRVWDTKT  187 (325)
T ss_pred             eeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecC-------CCccEEEEeccc
Confidence            445678888888864   56899999999999877765  344555554 33333 44333       489999999977


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEE-------CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSC-------SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP  483 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~  483 (642)
                              .+     ..+.|..-.......|.|       .-|..|++..    |...+-+|.+...+.    +.+..-+
T Consensus       188 --------~k-----~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG----gGp~lslwhLrsse~----t~vfpip  246 (325)
T KOG0649|consen  188 --------QK-----HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG----GGPKLSLWHLRSSES----TCVFPIP  246 (325)
T ss_pred             --------cc-----eeEEeccccChhhcCcccCceeEEEeccCceEEec----CCCceeEEeccCCCc----eEEEecc
Confidence                    22     333332221011111212       1233344332    445788888887664    6666556


Q ss_pred             CcccceeEecC
Q 039497          484 WIDTMPSWSPK  494 (642)
Q Consensus       484 ~~~~~~~~spd  494 (642)
                      ..+..+.|-.|
T Consensus       247 a~v~~v~F~~d  257 (325)
T KOG0649|consen  247 ARVHLVDFVDD  257 (325)
T ss_pred             cceeEeeeecc
Confidence            66777777744

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.30  E-value=1  Score=42.48  Aligned_cols=157  Identities=16%  Similarity=0.081  Sum_probs=93.9

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      .+-+|||. +.|..  ++...|-.+|..+++..+...  ....+.+..-|||..- ++.         ...-|.+++.  
T Consensus        67 vapapdG~-VWft~--qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~W-itd---------~~~aI~R~dp--  131 (353)
T COG4257          67 VAPAPDGA-VWFTA--QGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAW-ITD---------TGLAIGRLDP--  131 (353)
T ss_pred             cccCCCCc-eEEec--CccccceecCCCCCceEEEecCCCCCCceEEECCCCCee-Eec---------CcceeEEecC--
Confidence            35588886 66755  456778888999998777665  4556778889998743 333         1224555543  


Q ss_pred             CCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCccccee
Q 039497          413 DPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPS  490 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~  490 (642)
                      +     ..   ..+.-+|.... ......+.|.++|+ |.|+....-..   ++|..++..    +..... ......+.
T Consensus       132 k-----t~---evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~yG---rLdPa~~~i----~vfpaPqG~gpyGi~  195 (353)
T COG4257         132 K-----TL---EVTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGAYG---RLDPARNVI----SVFPAPQGGGPYGIC  195 (353)
T ss_pred             c-----cc---ceEEeecccccCCCcccceeeCCCcc-EEEeeccccce---ecCcccCce----eeeccCCCCCCcceE
Confidence            1     11   11223333221 24556789999984 66766432222   556655542    333322 12345678


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      -.|||. ++|++--++.       |.++|...+..+.+..
T Consensus       196 atpdGs-vwyaslagna-------iaridp~~~~aev~p~  227 (353)
T COG4257         196 ATPDGS-VWYASLAGNA-------IARIDPFAGHAEVVPQ  227 (353)
T ss_pred             ECCCCc-EEEEeccccc-------eEEcccccCCcceecC
Confidence            899997 6777654432       8888988877666654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.21  Score=48.93  Aligned_cols=174  Identities=11%  Similarity=0.041  Sum_probs=97.4

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC
Q 039497          400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL  479 (642)
Q Consensus       400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l  479 (642)
                      .+.+++|.+..  ...  ...     +...+..+.  ....+.-+|--.+|+..........|-+||+...+.....+.+
T Consensus       124 sG~l~~~~~k~--~d~--hss-----~l~~la~g~--g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv  192 (412)
T KOG3881|consen  124 SGNLQVRHDKS--GDL--HSS-----KLIKLATGP--GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV  192 (412)
T ss_pred             CCcEEEEeccC--Ccc--ccc-----cceeeecCC--ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence            67788887764  100  001     334444433  3334445555556665554433347788888866421111222


Q ss_pred             CCCCCc------ccceeEecC--CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEc
Q 039497          480 TDGPWI------DTMPSWSPK--GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFS  550 (642)
Q Consensus       480 ~~~~~~------~~~~~~spd--G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S  550 (642)
                      .+..-.      ...+.|-|.  ...|+.....        .++.+||...+. +++.... .+.       .+.+....
T Consensus       193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~--------hqvR~YDt~~qR-RPV~~fd~~E~-------~is~~~l~  256 (412)
T KOG3881|consen  193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRY--------HQVRLYDTRHQR-RPVAQFDFLEN-------PISSTGLT  256 (412)
T ss_pred             CCccccceeeeeeccceecCCCCCceEEEEecc--------eeEEEecCcccC-cceeEeccccC-------cceeeeec
Confidence            222222      233455544  3444444432        358999987543 3333322 232       56788999


Q ss_pred             CCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec--cCCCCCCCCcEEecCCceEEee
Q 039497          551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL--TWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       551 ~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l--t~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      |+|+.||+....+                 +|..+|+.++.+---  -.-.+.+.++.-+|..++++++
T Consensus       257 p~gn~Iy~gn~~g-----------------~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~  308 (412)
T KOG3881|consen  257 PSGNFIYTGNTKG-----------------QLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC  308 (412)
T ss_pred             CCCcEEEEecccc-----------------hhheecccCceeeccccCCccCCcceEEEcCCCceEEee
Confidence            9999987776543                 888999888764322  2334667788888888888764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.23  E-value=0.2  Score=51.34  Aligned_cols=121  Identities=12%  Similarity=0.202  Sum_probs=73.0

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecC-CCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPT-EKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      ..+.|+.||..|+-.++   ..+|-++|.-..+......   ...+.++.|-|- ++.++...      .++..++++++
T Consensus        54 N~LeWn~dG~lL~SGSD---D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg------AgDk~i~lfdl  124 (758)
T KOG1310|consen   54 NCLEWNADGELLASGSD---DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG------AGDKLIKLFDL  124 (758)
T ss_pred             cceeecCCCCEEeecCC---cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec------cCcceEEEEec
Confidence            46799999998877544   4677788877555444444   456888899884 55666665      34788899998


Q ss_pred             EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497          409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV  468 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~  468 (642)
                      +..+.+..+.+-.+   ......-+. ..+..++.-|++-..++....+|  .|.-+|+.
T Consensus       125 ~~~~~~~~d~~~~~---~~~~~~cht-~rVKria~~p~~PhtfwsasEDG--tirQyDiR  178 (758)
T KOG1310|consen  125 DSSKEGGMDHGMEE---TTRCWSCHT-DRVKRIATAPNGPHTFWSASEDG--TIRQYDIR  178 (758)
T ss_pred             ccccccccccCccc---hhhhhhhhh-hhhhheecCCCCCceEEEecCCc--ceeeeccc
Confidence            75322222111110   111111222 45566777788855555555444  56667765

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=96.19  E-value=0.87  Score=48.20  Aligned_cols=186  Identities=11%  Similarity=0.043  Sum_probs=99.3

Q ss_pred             ceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe------ecCCCCcccCCeecCCCCEEEEEEeecCCCCC
Q 039497          235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEG  308 (642)
Q Consensus       235 ~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~  308 (642)
                      ...+..|...+-.++.-.++. |+..+.     ..++.+|-.      ..+++..+.....-|++ .++.-+.+..    
T Consensus        94 ~~~LkgH~snVC~ls~~~~~~-~iSgSW-----D~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt----  162 (745)
T KOG0301|consen   94 LYTLKGHKSNVCSLSIGEDGT-LISGSW-----DSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKT----  162 (745)
T ss_pred             hhhhhccccceeeeecCCcCc-eEeccc-----ccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcce----
Confidence            345566666665555555665 555333     336677766      23444445444445555 2222111111    


Q ss_pred             CcccceEeeccCCCceeEEeeeC--CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCC
Q 039497          309 QSTIPHLEPVASPVKELRMLRLN--GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEK  385 (642)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~  385 (642)
                        ..+|-.  +.....  +....  .+..++-+++..+-.    ++.+.|.++++++........ ...++++...+++.
T Consensus       163 --IklWk~--~~~l~t--f~gHtD~VRgL~vl~~~~flSc----sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~  232 (745)
T KOG0301|consen  163 --IKLWKG--GTLLKT--FSGHTDCVRGLAVLDDSHFLSC----SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG  232 (745)
T ss_pred             --eeeccC--Cchhhh--hccchhheeeeEEecCCCeEee----cCCceEEEEeccCceeeeeeccceEEEEEEecCCCC
Confidence              222211  111111  11111  145566677665544    445788888986665444332 44566777667777


Q ss_pred             EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497          386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL  465 (642)
Q Consensus       386 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~  465 (642)
                      .++.+.       ++..++||....               ..+.|+-+. ..++...+-++|..++-.++  |.-.||..
T Consensus       233 ~Ivs~g-------EDrtlriW~~~e---------------~~q~I~lPt-tsiWsa~~L~NgDIvvg~SD--G~VrVfT~  287 (745)
T KOG0301|consen  233 LIVSTG-------EDRTLRIWKKDE---------------CVQVITLPT-TSIWSAKVLLNGDIVVGGSD--GRVRVFTV  287 (745)
T ss_pred             eEEEec-------CCceEEEeecCc---------------eEEEEecCc-cceEEEEEeeCCCEEEeccC--ceEEEEEe
Confidence            666554       488999999754               556665554 56777888888875554432  44344444


Q ss_pred             E
Q 039497          466 D  466 (642)
Q Consensus       466 d  466 (642)
                      +
T Consensus       288 ~  288 (745)
T KOG0301|consen  288 D  288 (745)
T ss_pred             c
Confidence            3

>PRK13614 lipoprotein LpqB; Provisional

Probab=96.17  E-value=0.43  Score=51.22  Aligned_cols=170  Identities=14%  Similarity=0.110  Sum_probs=99.9

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..+..|+||+.+++...  ....+++... ++..+.+........+.|.++| .+..+..       ....++..+..  
T Consensus       346 ~s~avS~~g~~~A~~~~--~~~~l~~~~~-g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~-------g~~~~vv~~~~--  412 (573)
T PRK13614        346 ASPAESPVSQTVAFLNG--SRTTLYTVSP-GQPARALTSGSTLTRPSFSPQD-WVWTAGP-------GGNGRIVAYRP--  412 (573)
T ss_pred             cceeecCCCceEEEecC--CCcEEEEecC-CCcceeeecCCCccCCcccCCC-CEEEeeC-------CCCceEEEEec--
Confidence            45689999999999753  2346776665 4454555556678899999998 6766553       22224444443  


Q ss_pred             CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEEC---CCCccccceeeCCCC-----CC
Q 039497          413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA---VNGEFNGDIRQLTDG-----PW  484 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~---~~g~~~~~~~~l~~~-----~~  484 (642)
                      ++.-  ...................+..+.+|+||-+++.....+|..+|++--+   ..|+    .+.|+..     ..
T Consensus       413 ~g~~--~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~----P~~L~~~~~~~~~~  486 (573)
T PRK13614        413 TGVA--EGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGT----PRELTAPITLAADS  486 (573)
T ss_pred             CCCc--ccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCC----eEEccCceecccCC
Confidence            2110  0000000011122222124788999999999999886667666775333   3454    2444332     23


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                      ......|..++..++......     ....++++.+.++..+
T Consensus       487 ~~~sl~W~~~~sl~V~~~~~~-----~~~~~~~v~v~~g~~~  523 (573)
T PRK13614        487 DADTGAWVGDSTVVVTKASAT-----SNVVPELLSVDAGQPQ  523 (573)
T ss_pred             CcceeEEcCCCEEEEEeccCC-----CcceEEEEEeCCCCcc
Confidence            556789998888655554332     4556888888665544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.13  E-value=0.35  Score=48.23  Aligned_cols=148  Identities=15%  Similarity=0.148  Sum_probs=93.6

Q ss_pred             eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC
Q 039497          376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG  455 (642)
Q Consensus       376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~  455 (642)
                      ..+.|.-.-+.|++..      ..+.++.+|+++.        +.     ..+.++.+. ..+..+.|.|..-.++..+.
T Consensus       247 l~Ls~n~~~~nVLaSg------saD~TV~lWD~~~--------g~-----p~~s~~~~~-k~Vq~l~wh~~~p~~LLsGs  306 (463)
T KOG0270|consen  247 LALSWNRNFRNVLASG------SADKTVKLWDVDT--------GK-----PKSSITHHG-KKVQTLEWHPYEPSVLLSGS  306 (463)
T ss_pred             HHHHhccccceeEEec------CCCceEEEEEcCC--------CC-----cceehhhcC-CceeEEEecCCCceEEEecc
Confidence            3567777777777766      3488999999987        33     455555555 78889999998877776665


Q ss_pred             CCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCC
Q 039497          456 RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG  535 (642)
Q Consensus       456 ~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~  535 (642)
                      .++  ++.+.|...-..   .-.--.-.+.+..++|.|-....++.+.+.+       .||-+|+........+...+.+
T Consensus       307 ~D~--~V~l~D~R~~~~---s~~~wk~~g~VEkv~w~~~se~~f~~~tddG-------~v~~~D~R~~~~~vwt~~AHd~  374 (463)
T KOG0270|consen  307 YDG--TVALKDCRDPSN---SGKEWKFDGEVEKVAWDPHSENSFFVSTDDG-------TVYYFDIRNPGKPVWTLKAHDD  374 (463)
T ss_pred             ccc--eEEeeeccCccc---cCceEEeccceEEEEecCCCceeEEEecCCc-------eEEeeecCCCCCceeEEEeccC
Confidence            444  677777652110   0111111234567889988877777765543       2888888765332333334444


Q ss_pred             CCCcccccccceEEcCCCCEEEEEEec
Q 039497          536 SGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       536 ~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                             .+..+.+++.-..++.+...
T Consensus       375 -------~ISgl~~n~~~p~~l~t~s~  394 (463)
T KOG0270|consen  375 -------EISGLSVNIQTPGLLSTAST  394 (463)
T ss_pred             -------CcceEEecCCCCcceeeccc
Confidence                   56778888777766666443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.12  E-value=0.54  Score=43.90  Aligned_cols=119  Identities=18%  Similarity=0.082  Sum_probs=76.5

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      ....+|+|+++++.+.+   ..+|+++.++...  ...+..   ...-....||.....+|++..       ++...||+
T Consensus       162 ns~~~snd~~~~~~Vgd---s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q-------dg~~~I~D  231 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGD---SRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ-------DGTCAIYD  231 (344)
T ss_pred             eeeEEcCCCceEEEecC---CCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec-------CCcEEEEE
Confidence            35689999999998865   3677777665443  333222   345567789988888888764       78999999


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCe-EEEEeCCCCceeEEEEECCCCcc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF-LVFRSGRSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~-l~~~~~~~g~~~l~~~d~~~g~~  472 (642)
                      +..  .      +.....+...-..+. +......|||-|-. |+|.+.  +-..+.+.|+.++..
T Consensus       232 VR~--~------~tpm~~~sstrp~hn-Ga~R~c~Fsl~g~lDLLf~sE--hfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  232 VRN--M------ATPMAEISSTRPHHN-GAFRVCRFSLYGLLDLLFISE--HFSRVHVVDTRNYVN  286 (344)
T ss_pred             ecc--c------ccchhhhcccCCCCC-CceEEEEecCCCcceEEEEec--CcceEEEEEcccCce
Confidence            976  3      211000111112222 66777889986632 556654  455888999988875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.10  E-value=0.23  Score=51.82  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=65.9

Q ss_pred             CCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                      |..|.....    ..|.++|.++++...-..-..+..+.||++|+.+++.+        ...+.|+..+...-......|
T Consensus       117 G~LL~~~~~----~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t--------~~~i~il~~~~~~~~~~~~~g  184 (443)
T PF04053_consen  117 GNLLGVKSS----DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT--------KDSIYILKYNLEAVAAIPEEG  184 (443)
T ss_dssp             SSSEEEEET----TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE---------S-SEEEEEE-HHHHHHBTTTB
T ss_pred             CcEEEEECC----CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe--------CCeEEEEEecchhcccccccC
Confidence            775655442    36999999988765554433478999999999999998        557777777651000000011


Q ss_pred             CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEE
Q 039497          421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~  500 (642)
                      -+  .....+..-. ..+.+..|--|  -++|++..    +|.-  +-.|+.    ..|........-..+.|..+.|++
T Consensus       185 ~e--~~f~~~~E~~-~~IkSg~W~~d--~fiYtT~~----~lkY--l~~Ge~----~~i~~ld~~~yllgy~~~~~~ly~  249 (443)
T PF04053_consen  185 VE--DAFELIHEIS-ERIKSGCWVED--CFIYTTSN----HLKY--LVNGET----GIIAHLDKPLYLLGYLPKENRLYL  249 (443)
T ss_dssp             -G--GGEEEEEEE--S--SEEEEETT--EEEEE-TT----EEEE--EETTEE----EEEEE-SS--EEEEEETTTTEEEE
T ss_pred             ch--hceEEEEEec-ceeEEEEEEcC--EEEEEcCC----eEEE--EEcCCc----ceEEEcCCceEEEEEEccCCEEEE
Confidence            11  0122333213 56777888655  77777642    5533  223552    333222222333466666666666


Q ss_pred             EecCC
Q 039497          501 SSNRH  505 (642)
Q Consensus       501 ~~~~~  505 (642)
                      ...+.
T Consensus       250 ~Dr~~  254 (443)
T PF04053_consen  250 IDRDG  254 (443)
T ss_dssp             E-TT-
T ss_pred             EECCC
Confidence            66544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=96.08  E-value=0.35  Score=46.68  Aligned_cols=178  Identities=11%  Similarity=0.106  Sum_probs=95.2

Q ss_pred             ceeEEEEECCCCCeeEEee--cCCceeeeeecC-CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497          353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPT-EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI  429 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  429 (642)
                      ++.|.++|..+++..+...  ...+..+.|+.+ +-..+++.      ..++.+++|++..  .      ++    ..+.
T Consensus        49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~------ssDG~Vr~wD~Rs--~------~e----~a~~  110 (376)
T KOG1188|consen   49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISC------SSDGTVRLWDIRS--Q------AE----SARI  110 (376)
T ss_pred             CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEe------ccCCeEEEEEeec--c------hh----hhhe
Confidence            3567777877765444433  455667777663 44444444      2378999999987  2      21    2222


Q ss_pred             ccccCC-CCccCcEECCCCCeEEEEeCC-CCceeEEEEECCCCccccceeeC-CCCCCcccceeEecCCCEEEEEecCCC
Q 039497          430 LTKEET-GNNAFPSCSPDGKFLVFRSGR-SGHKNLFVLDAVNGEFNGDIRQL-TDGPWIDTMPSWSPKGDLIAFSSNRHN  506 (642)
Q Consensus       430 l~~~~~-~~~~~~~~SpDg~~l~~~~~~-~g~~~l~~~d~~~g~~~~~~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~~  506 (642)
                      ...... .....+...-.++.++..... .....|++||....+.  .+..+ ..+...++.+.|+|...-++.++.-.+
T Consensus       111 ~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG  188 (376)
T KOG1188|consen  111 SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG  188 (376)
T ss_pred             eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence            222210 011112222123334333322 2344889999875431  02333 345567889999997755555554432


Q ss_pred             CCCCCceeEEEEeCCCCceE--EeeecCCCCCCCcccccccceEEcCCC-CEEEEEEecCC
Q 039497          507 PDNVEAFSLYVIKPDGSGLR--RIHVAGPEGSGDVDRERINHVCFSADG-EWLLFTANLGA  564 (642)
Q Consensus       507 ~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~S~Dg-~~l~~~~~~~~  564 (642)
                      -       +-++|++.....  .++..+...       .+..+.|..++ ++|+..+..++
T Consensus       189 L-------vnlfD~~~d~EeDaL~~viN~~s-------SI~~igw~~~~ykrI~clTH~Et  235 (376)
T KOG1188|consen  189 L-------VNLFDTKKDNEEDALLHVINHGS-------SIHLIGWLSKKYKRIMCLTHMET  235 (376)
T ss_pred             e-------EEeeecCCCcchhhHHHhhcccc-------eeeeeeeecCCcceEEEEEccCc
Confidence            1       667787654322  122222232       45678999998 44666665543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.07  E-value=2.8  Score=45.35  Aligned_cols=97  Identities=15%  Similarity=0.147  Sum_probs=66.6

Q ss_pred             ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCC-CCCCceeEEEEeCCCCceEEeeecCCCCCC
Q 039497          459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP-DNVEAFSLYVIKPDGSGLRRIHVAGPEGSG  537 (642)
Q Consensus       459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~-~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~  537 (642)
                      .+.|.++|+.++..   .+.+.-+...+..+.|--..+.+-|..+..+. -....++|.+.|+.+|..+.+...  .   
T Consensus       446 sGTV~vvdvst~~v---~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l--~---  517 (1062)
T KOG1912|consen  446 SGTVDVVDVSTNAV---AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL--Q---  517 (1062)
T ss_pred             CceEEEEEecchhh---hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccC--C---
Confidence            34788899988875   45566666778888998777777776654321 122467899999998876655411  1   


Q ss_pred             CcccccccceEEcCCCCEEEEEEecC
Q 039497          538 DVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       538 ~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      .+++..+..+..|.-|++|++.-.+.
T Consensus       518 ~~despI~~irvS~~~~yLai~Fr~~  543 (1062)
T KOG1912|consen  518 KPDESPIRAIRVSSSGRYLAILFRRE  543 (1062)
T ss_pred             CCCcCcceeeeecccCceEEEEeccc
Confidence            12223677889999999998877654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.03  E-value=0.15  Score=53.87  Aligned_cols=173  Identities=14%  Similarity=0.169  Sum_probs=88.4

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..+|..||.+|+.+-..   +.|.+=.++|....--.. .....++.||+|.+.++|...       .+..++|+....+
T Consensus       120 SmsWn~dG~kIcIvYeD---GavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~a-------nge~hlydnqgnF  189 (1189)
T KOG2041|consen  120 SMSWNLDGTKICIVYED---GAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKA-------NGETHLYDNQGNF  189 (1189)
T ss_pred             EEEEcCCCcEEEEEEcc---CCEEEEeeccceecchhcchheccceeecccHHHHHhhhc-------CCcEEEecccccH
Confidence            56899999999886542   345555555654322111 233457899999998887753       5667777653311


Q ss_pred             CCCCCC------CCCccccceEEccccCCCCccCcE-ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497          413 DPSDDN------NREEIPCDVKILTKEETGNNAFPS-CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI  485 (642)
Q Consensus       413 ~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~-~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~  485 (642)
                      .-+...      +| -...-..++.... ....... .-||--.++... .+|.-+|.+-.-+ .+    +..+..+ ..
T Consensus       190 ~~Kl~~~c~Vn~tg-~~s~~~~kia~i~-w~~g~~~~v~pdrP~lavcy-~nGr~QiMR~eND-~~----Pvv~dtg-m~  260 (1189)
T KOG2041|consen  190 ERKLEKDCEVNGTG-IFSNFPTKIAEIE-WNTGPYQPVPPDRPRLAVCY-ANGRMQIMRSEND-PE----PVVVDTG-MK  260 (1189)
T ss_pred             HHhhhhceEEeeee-eecCCCcccccee-eccCccccCCCCCCEEEEEE-cCceehhhhhcCC-CC----CeEEecc-cE
Confidence            100000      00 0000111121111 1111112 234665665544 3466666654433 33    2333333 56


Q ss_pred             ccceeEecCCCEEEEEecCCCCCCC-CceeEEEEeCCCCce
Q 039497          486 DTMPSWSPKGDLIAFSSNRHNPDNV-EAFSLYVIKPDGSGL  525 (642)
Q Consensus       486 ~~~~~~spdG~~l~~~~~~~~~~~~-~~~~l~~~d~~~~~~  525 (642)
                      +....|+++|..|++.+.......+ ..+.|..+..-|.-.
T Consensus       261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~  301 (1189)
T KOG2041|consen  261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIV  301 (1189)
T ss_pred             eecceecCCCcEEEEccCcccccCccccceEEEeccchhhe
Confidence            6778999999999988765432111 233555555544333

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=95.96  E-value=0.62  Score=46.27  Aligned_cols=150  Identities=13%  Similarity=0.058  Sum_probs=95.8

Q ss_pred             CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC-----cccceeEecCCCEEEEEecCCCCC-
Q 039497          435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-----IDTMPSWSPKGDLIAFSSNRHNPD-  508 (642)
Q Consensus       435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~-----~~~~~~~spdG~~l~~~~~~~~~~-  508 (642)
                      +++...++|...|.-|+++.   ...-|+.++.++|+.    +.++....     .......+++| .|+|+.....-. 
T Consensus       114 CGRPLGl~f~~~ggdL~VaD---AYlGL~~V~p~g~~a----~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~  185 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVAD---AYLGLLKVGPEGGLA----ELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDR  185 (376)
T ss_pred             cCCcceEEeccCCCeEEEEe---cceeeEEECCCCCcc----eeccccccCeeeeecCceeEcCCC-eEEEeccccccch
Confidence            45667789999997777765   566799999987763    55554321     12345677755 466665543210 


Q ss_pred             ---------CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCC
Q 039497          509 ---------NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPY  579 (642)
Q Consensus       509 ---------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~  579 (642)
                               ....-+++.||..++..+.+...-.         -...++.|||+..++++..-.                
T Consensus       186 rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~---------F~NGlaLS~d~sfvl~~Et~~----------------  240 (376)
T KOG1520|consen  186 RDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLY---------FPNGLALSPDGSFVLVAETTT----------------  240 (376)
T ss_pred             hheEEeeecCCCccceEEecCcccchhhhhhccc---------ccccccCCCCCCEEEEEeecc----------------
Confidence                     1234458888887777666554211         235689999999998886543                


Q ss_pred             CcEEEEEcCCCce---eeccC-CCCCCCCcEEecCCceEEee
Q 039497          580 GDLYVVKLDGSGL---RRLTW-NGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       580 ~~l~~~~~~~~~~---~~lt~-~~~~~~~~~~s~dg~~~~~~  617 (642)
                      .+|..|=+.+...   ..++. -.+....+..+++|.++++.
T Consensus       241 ~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal  282 (376)
T KOG1520|consen  241 ARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVAL  282 (376)
T ss_pred             ceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEE
Confidence            2666666666543   33333 34555678888999888765

>PRK13613 lipoprotein LpqB; Provisional

Probab=95.85  E-value=2.3  Score=46.30  Aligned_cols=169  Identities=11%  Similarity=0.024  Sum_probs=93.8

Q ss_pred             cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCc----eeE-EeeeCCCccEEcCCCCEEEEEecCCCcee-E
Q 039497          283 HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVK----ELR-MLRLNGSFPSFSPDGGLIVFNHDFELNAG-I  356 (642)
Q Consensus       283 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~-l  356 (642)
                      ....++.|+||..+++...++       ..+++..+.....    ... +....-..|.|.++| .+..+.......+ |
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~-------~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl  435 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADG-------DSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLL  435 (599)
T ss_pred             CccceEEcCCCceEEEEcCCC-------cEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEE
Confidence            455788999999888884322       2333333322211    001 111123578899888 4544422122233 5


Q ss_pred             EEEECCCCCeeEEee---cC-CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497          357 KIAKSDGSKRWTLIK---DR-TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK  432 (642)
Q Consensus       357 ~~~d~~~~~~~~l~~---~~-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (642)
                      +++.- +++...+..   .+ .+..+..|+||-+++++...    .+...+++-.+..  +.    .|..-......+..
T Consensus       436 ~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~----~g~~~v~va~V~R--~~----~G~~~l~~~~~l~~  504 (599)
T PRK13613        436 WLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEK----DGRRSLQIGRIVR--DA----KAVVSVEEFRSLAP  504 (599)
T ss_pred             EEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEec----CCCcEEEEEEEEe--CC----CCcEEeeccEEecc
Confidence            55553 444443333   33 68899999999999998742    2345666766655  21    12110113333433


Q ss_pred             cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497          433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE  471 (642)
Q Consensus       433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~  471 (642)
                      .- ..+..+.|..++..++......+...+|++++++..
T Consensus       505 ~l-~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~  542 (599)
T PRK13613        505 EL-EDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGST  542 (599)
T ss_pred             CC-CccceeEEcCCCEEEEEeccCCCCcceEEEecCCcC
Confidence            33 346788999888755544444456789999998544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.85  E-value=1.8  Score=41.42  Aligned_cols=196  Identities=12%  Similarity=0.167  Sum_probs=98.8

Q ss_pred             CCEEEEEecCCCceeEEEEE---CCC--CCeeEEee----cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          341 GGLIVFNHDFELNAGIKIAK---SDG--SKRWTLIK----DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d---~~~--~~~~~l~~----~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      |+-|+..+. +....||--.   .+.  .+....+.    ...+.++.|.|-  |=.|+.++       .++.++||...
T Consensus        73 GqvvA~cS~-Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~-------aDG~lRIYEA~  144 (361)
T KOG2445|consen   73 GQVVATCSY-DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS-------ADGILRIYEAP  144 (361)
T ss_pred             cceEEEEec-CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec-------cCcEEEEEecC
Confidence            565666554 4445555432   122  12222222    556888999985  44455544       37888888763


Q ss_pred             eecCCCCCCCCCccccceEEccccC---CCCccCcEECCC---CCeEEEEeCCC----CceeEEEEECCCCccccceeeC
Q 039497          410 FQLDPSDDNNREEIPCDVKILTKEE---TGNNAFPSCSPD---GKFLVFRSGRS----GHKNLFVLDAVNGEFNGDIRQL  479 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~SpD---g~~l~~~~~~~----g~~~l~~~d~~~g~~~~~~~~l  479 (642)
                      ...+-    ..-++-.+.+.+...+   ......+.|+|-   ...|+..++..    +...||.++-.+.+. ..+..|
T Consensus       145 dp~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw-~kva~L  219 (361)
T KOG2445|consen  145 DPMNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW-LKVAEL  219 (361)
T ss_pred             Ccccc----ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee-eeehhc
Confidence            20000    0000000111111111   023345677753   24566666542    244677766554343 113345


Q ss_pred             CCCCCcccceeEecCC-C---EEEEEecCCCCCCCCceeEEEEeCCCCc------------------eEEee-ecCCCCC
Q 039497          480 TDGPWIDTMPSWSPKG-D---LIAFSSNRHNPDNVEAFSLYVIKPDGSG------------------LRRIH-VAGPEGS  536 (642)
Q Consensus       480 ~~~~~~~~~~~~spdG-~---~l~~~~~~~~~~~~~~~~l~~~d~~~~~------------------~~~l~-~~~~~~~  536 (642)
                      ......+..++|+|+- +   .|+.+..++         |+++.+....                  .+.+. ..++++ 
T Consensus       220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg---------v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-  289 (361)
T KOG2445|consen  220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG---------VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-  289 (361)
T ss_pred             CCCCCcceeeeeccccCCceeeEEEeecCc---------EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-
Confidence            5556677888999963 2   344444443         5666554311                  11111 112333 


Q ss_pred             CCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          537 GDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       537 ~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                            .+..+.|.--|..|.-+..++-.
T Consensus       290 ------~VWrv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  290 ------EVWRVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             ------ceEEEEEeeeeeEEeecCCCcee
Confidence                  67889999999877777666543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=95.81  E-value=0.29  Score=46.94  Aligned_cols=111  Identities=18%  Similarity=0.144  Sum_probs=75.4

Q ss_pred             CCccCcEECCCC---CeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497          436 GNNAFPSCSPDG---KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA  512 (642)
Q Consensus       436 ~~~~~~~~SpDg---~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~  512 (642)
                      ......+|+-|-   .-++.+..  -...|+++|+.+++.   ...+..+.+.++.+.+.|+.-.|+.......      
T Consensus        90 Esfytcsw~yd~~~~~p~la~~G--~~GvIrVid~~~~~~---~~~~~ghG~sINeik~~p~~~qlvls~SkD~------  158 (385)
T KOG1034|consen   90 ESFYTCSWSYDSNTGNPFLAAGG--YLGVIRVIDVVSGQC---SKNYRGHGGSINEIKFHPDRPQLVLSASKDH------  158 (385)
T ss_pred             cceEEEEEEecCCCCCeeEEeec--ceeEEEEEecchhhh---ccceeccCccchhhhcCCCCCcEEEEecCCc------
Confidence            344456776553   33444443  234899999998887   6677777788899999998866666655443      


Q ss_pred             eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                       .|.+|++.+.....+.- +..+    .|..+.++-|++||.+|+-...+-
T Consensus       159 -svRlwnI~~~~Cv~VfG-G~eg----HrdeVLSvD~~~~gd~i~ScGmDh  203 (385)
T KOG1034|consen  159 -SVRLWNIQTDVCVAVFG-GVEG----HRDEVLSVDFSLDGDRIASCGMDH  203 (385)
T ss_pred             -eEEEEeccCCeEEEEec-cccc----ccCcEEEEEEcCCCCeeeccCCcc
Confidence             39999998776655542 3332    233678899999999887666553

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=95.80  E-value=1.7  Score=40.75  Aligned_cols=123  Identities=12%  Similarity=0.025  Sum_probs=74.0

Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE--ccccCCCCccCcEECCCCCeEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI--LTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      ...+..+|+|+++++.+..       ..++.+|.++.  +      ++    ....  +.... ..-...+||.....++
T Consensus       160 ~~ns~~~snd~~~~~~Vgd-------s~~Vf~y~id~--~------se----y~~~~~~a~t~-D~gF~~S~s~~~~~FA  219 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGD-------SRRVFRYAIDD--E------SE----YIENIYEAPTS-DHGFYNSFSENDLQFA  219 (344)
T ss_pred             ceeeeEEcCCCceEEEecC-------CCcceEEEeCC--c------cc----eeeeeEecccC-CCceeeeeccCcceEE
Confidence            3678899999999988864       67788888876  3      22    2222  22222 2223457888777777


Q ss_pred             EEeCCCCceeEEEEECCCCccccceeeCC----CCCCcccceeEecCCCE-EEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLT----DGPWIDTMPSWSPKGDL-IAFSSNRHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~----~~~~~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                      ....+ |  .+-+||+..-..  ++..++    .+.+.+..+.||+-|-. |+|.+..-       ..+.++|+.+..-.
T Consensus       220 v~~Qd-g--~~~I~DVR~~~t--pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhf-------s~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  220 VVFQD-G--TCAIYDVRNMAT--PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHF-------SRVHVVDTRNYVNH  287 (344)
T ss_pred             EEecC-C--cEEEEEeccccc--chhhhcccCCCCCCceEEEEecCCCcceEEEEecCc-------ceEEEEEcccCcee
Confidence            76633 3  566777653221  022222    24566777899987743 45554432       34888999876544


Q ss_pred             Ee
Q 039497          527 RI  528 (642)
Q Consensus       527 ~l  528 (642)
                      ++
T Consensus       288 q~  289 (344)
T KOG4532|consen  288 QV  289 (344)
T ss_pred             eE
Confidence            43

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.75  E-value=2.6  Score=42.54  Aligned_cols=168  Identities=17%  Similarity=0.212  Sum_probs=76.1

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------cCCceeeeeecC---CCEEEEEEcCCCcccCCCe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------DRTAFYNSWSPT---EKHVIYTSTGPIFQSERAT  402 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~  402 (642)
                      .++|.|||+.++. . +  ...|++++.++.....+..        ......++++|+   ..+|++.............
T Consensus         6 ~~a~~pdG~l~v~-e-~--~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    6 SMAFLPDGRLLVA-E-R--SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEETTSCEEEE-E-T--TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             EEEEeCCCcEEEE-e-C--CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            4588999975433 2 2  5789998855544233322        334567788884   3455544321100112334


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEc----cc--cCCCCccCcEECCCCCeEEEEeCCC-----------CceeEEEE
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKIL----TK--EETGNNAFPSCSPDGKFLVFRSGRS-----------GHKNLFVL  465 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l----~~--~~~~~~~~~~~SpDg~~l~~~~~~~-----------g~~~l~~~  465 (642)
                      ..|.+...  +.    +...+. ..+.|    ..  ........+.|.||| +|+++....           ....|.++
T Consensus        82 ~~v~r~~~--~~----~~~~~~-~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri  153 (331)
T PF07995_consen   82 NRVVRFTL--SD----GDGDLS-SEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRI  153 (331)
T ss_dssp             EEEEEEEE--ET----TSCEEE-EEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEE
T ss_pred             eeeEEEec--cC----Cccccc-cceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEe
Confidence            45655554  10    100100 11111    11  110123458999999 666654321           13478899


Q ss_pred             ECCCCcccc----------ceeeCCCCCCcccceeEecC-CCEEEEEecCCCCCCCCceeEEEEe
Q 039497          466 DAVNGEFNG----------DIRQLTDGPWIDTMPSWSPK-GDLIAFSSNRHNPDNVEAFSLYVIK  519 (642)
Q Consensus       466 d~~~g~~~~----------~~~~l~~~~~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~l~~~d  519 (642)
                      +.+ |+.+.          ..+....+-.+...++|+|. |+ |+.......    ...+|.++.
T Consensus       154 ~~d-G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~----~~dein~i~  212 (331)
T PF07995_consen  154 DPD-GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPD----GWDEINRIE  212 (331)
T ss_dssp             ETT-SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SS----SSEEEEEE-
T ss_pred             ccc-CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCC----CCcEEEEec
Confidence            876 44200          01111222233455699998 65 554443321    235565553

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK13613 lipoprotein LpqB; Provisional

Probab=95.70  E-value=2.4  Score=46.13  Aligned_cols=167  Identities=13%  Similarity=0.099  Sum_probs=97.0

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-----eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEE-EE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-----WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ-IA  406 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~-l~  406 (642)
                      ..++.|++|+.++++..  ....+++-.+.++..     +.+........+.|.++| .+..+..      +...-+ ++
T Consensus       366 ~s~avS~~g~~~A~v~~--~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~------~~~~~~vl~  436 (599)
T PRK13613        366 RRVAVSRDESRAAGISA--DGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDR------DPADPRLLW  436 (599)
T ss_pred             cceEEcCCCceEEEEcC--CCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecC------CCCCceEEE
Confidence            46788999999999863  235777766543332     234445668889999988 5665532      112222 22


Q ss_pred             EEEeecCCCCCCCCCccccceEEcc--ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC---CCcc-ccceeeCC
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKILT--KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV---NGEF-NGDIRQLT  480 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~---~g~~-~~~~~~l~  480 (642)
                      .+..        +|     ....+.  ......+..+.+|+||-+++......+..+|++--+.   .|+. ...+..+.
T Consensus       437 v~~~--------~G-----~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~  503 (599)
T PRK13613        437 LLQG--------DG-----EPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLA  503 (599)
T ss_pred             EEcC--------CC-----cEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEec
Confidence            2322        22     122221  1211257889999999999998876666666654432   3321 01122333


Q ss_pred             CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497          481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       481 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                      .....+....|..++..++......     +...+|++.+++....
T Consensus       504 ~~l~~v~~~~W~~~~sL~Vlg~~~~-----~~~~v~~v~vdG~~~~  544 (599)
T PRK13613        504 PELEDVTDMSWAGDSQLVVLGREEG-----GVQQARYVQVDGSTPP  544 (599)
T ss_pred             cCCCccceeEEcCCCEEEEEeccCC-----CCcceEEEecCCcCcc
Confidence            3333467789998887554443222     3455899999877654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=95.59  E-value=0.39  Score=47.38  Aligned_cols=156  Identities=12%  Similarity=0.036  Sum_probs=79.2

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ...+++|+.||.... .....++.++......+.+..   ......+.+..+...+..+...    .+...+.++.+.. 
T Consensus        68 ~~~s~~~~llAv~~~-~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dka----gD~~~~di~s~~~-  141 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATS-SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKA----GDVYSFDILSADS-  141 (390)
T ss_pred             cccCCCceEEEEEeC-CCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeec----CCceeeeeecccc-
Confidence            355777776665432 222234444433221122211   3445566666666666665531    1222223333221 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee-CCCCCCccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDGPWIDTMPS  490 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~~~~~~~~~~  490 (642)
                              +     ..+.+..+- .....++||||+++|+++ ++++...|-.++.. -.    +.. ...+...+..++
T Consensus       142 --------~-----~~~~~lGhv-Sml~dVavS~D~~~Iita-DRDEkIRvs~ypa~-f~----IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  142 --------G-----RCEPILGHV-SMLLDVAVSPDDQFIITA-DRDEKIRVSRYPAT-FV----IESFCLGHKEFVSTIS  201 (390)
T ss_pred             --------c-----Ccchhhhhh-hhhheeeecCCCCEEEEe-cCCceEEEEecCcc-cc----hhhhccccHhheeeee
Confidence                    2     455555555 677889999999877654 56554343333321 11    122 223444566666


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL  525 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  525 (642)
                      .-++ ..|+-.+.++        +|++||..+++.
T Consensus       202 l~~~-~~LlS~sGD~--------tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  202 LTDN-YLLLSGSGDK--------TLRLWDITSGKL  227 (390)
T ss_pred             eccC-ceeeecCCCC--------cEEEEecccCCc
Confidence            6644 3344444444        399999987754

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.47  E-value=3.9  Score=42.62  Aligned_cols=65  Identities=23%  Similarity=0.299  Sum_probs=42.4

Q ss_pred             EEcCCCCEEEEEecC-------CCce-eEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497          336 SFSPDGGLIVFNHDF-------ELNA-GIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       336 ~~spdg~~l~~~~~~-------~~~~-~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      +.+|-|--||...+.       .... .|.+++..|.....+.. .+.+..+.|+.+.+.|++..        ++.++++
T Consensus        35 a~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~--------dG~v~vy  106 (410)
T PF04841_consen   35 AVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQS--------DGTVRVY  106 (410)
T ss_pred             EEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEc--------CCEEEEE
Confidence            445555555554332       2233 59999998887766655 56788899998766555443        6778888


Q ss_pred             EE
Q 039497          407 RV  408 (642)
Q Consensus       407 ~~  408 (642)
                      ++
T Consensus       107 ~~  108 (410)
T PF04841_consen  107 DL  108 (410)
T ss_pred             eC
Confidence            76

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.32  E-value=2.7  Score=39.92  Aligned_cols=67  Identities=19%  Similarity=0.284  Sum_probs=40.9

Q ss_pred             CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-C---CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-G---PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~---~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      ++..|++....   ..|+.+|..+|+.   +..... .   ...........+++.+++....+.        |+.+|++
T Consensus        75 ~~~~v~v~~~~---~~l~~~d~~tG~~---~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------l~~~d~~  140 (238)
T PF13360_consen   75 DGGRVYVGTSD---GSLYALDAKTGKV---LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK--------LVALDPK  140 (238)
T ss_dssp             ETTEEEEEETT---SEEEEEETTTSCE---EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE--------EEEEETT
T ss_pred             cccccccccce---eeeEecccCCcce---eeeeccccccccccccccCceEecCEEEEEeccCc--------EEEEecC
Confidence            45566666522   2899999999986   333211 1   111223344445888888775443        9999999


Q ss_pred             CCceE
Q 039497          522 GSGLR  526 (642)
Q Consensus       522 ~~~~~  526 (642)
                      +|+..
T Consensus       141 tG~~~  145 (238)
T PF13360_consen  141 TGKLL  145 (238)
T ss_dssp             TTEEE
T ss_pred             CCcEE
Confidence            88763

...

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.27  E-value=0.43  Score=48.13  Aligned_cols=165  Identities=17%  Similarity=0.179  Sum_probs=82.7

Q ss_pred             ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC----CCCCcccceeEecC---CCEEEEEecCC-CCCC
Q 039497          438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT----DGPWIDTMPSWSPK---GDLIAFSSNRH-NPDN  509 (642)
Q Consensus       438 ~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~----~~~~~~~~~~~spd---G~~l~~~~~~~-~~~~  509 (642)
                      ...++|.|||+.++ + .+.|  .|++++.+ |.....+..+.    ........++++|+   ..+||+..... ....
T Consensus         4 P~~~a~~pdG~l~v-~-e~~G--~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    4 PRSMAFLPDGRLLV-A-ERSG--RIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             EEEEEEETTSCEEE-E-ETTT--EEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             ceEEEEeCCCcEEE-E-eCCc--eEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            35689999986544 3 3334  78888843 44200112221    12233455688884   34455444421 1112


Q ss_pred             CCceeEEEEeCCCC-----ceEEeeec-CC-CCCCCcccccccceEEcCCCCEEEEEEecCCc--ccCCCCCCCCCCCCC
Q 039497          510 VEAFSLYVIKPDGS-----GLRRIHVA-GP-EGSGDVDRERINHVCFSADGEWLLFTANLGAV--MAEPVSWPNQFQPYG  580 (642)
Q Consensus       510 ~~~~~l~~~d~~~~-----~~~~l~~~-~~-~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~--~~~~~~~~~~~~~~~  580 (642)
                      .....|.++.++.+     ..+.|... .. ..    .......+.|.||| +||++..+...  ..+..     -...+
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~----~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~-----~~~~G  148 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSS----GNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDP-----NSLRG  148 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CS----SSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCST-----TSSTT
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCC----CCCCCccccCCCCC-cEEEEeCCCCCccccccc-----ccccc
Confidence            24567888877654     12222211 10 00    00133568999999 67777655443  11111     11356


Q ss_pred             cEEEEEcCCCc-------------eeeccCCCCCCCCcEEecC-CceEEee
Q 039497          581 DLYVVKLDGSG-------------LRRLTWNGYENGTPAWHPG-NQLDLGK  617 (642)
Q Consensus       581 ~l~~~~~~~~~-------------~~~lt~~~~~~~~~~~s~d-g~~~~~~  617 (642)
                      .|.+++.++..             ...+...-.+...++|.|. |+++++.
T Consensus       149 ~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d  199 (331)
T PF07995_consen  149 KILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAAD  199 (331)
T ss_dssp             EEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEE
T ss_pred             eEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEc
Confidence            89999988752             1222222234467899998 8888765

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK13615 lipoprotein LpqB; Provisional

Probab=95.25  E-value=2.2  Score=45.83  Aligned_cols=166  Identities=12%  Similarity=0.060  Sum_probs=96.3

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..+..|+||+.+++...   ...+++-... +..+.+........+.|.++| .+..+..+       ...++.....  
T Consensus       337 ~s~avS~dg~~~A~v~~---~~~l~vg~~~-~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g-------~~~~l~~~~~--  402 (557)
T PRK13615        337 DAATLSADGRQAAVRNA---SGVWSVGDGD-RDAVLLDTRPGLVAPSLDAQG-YVWSTPAS-------DPRGLVAWGP--  402 (557)
T ss_pred             ccceEcCCCceEEEEcC---CceEEEecCC-CcceeeccCCccccCcCcCCC-CEEEEeCC-------CceEEEEecC--
Confidence            45789999999999854   2356655444 344455445568899999998 67666532       2344444433  


Q ss_pred             CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEEC--CCCcc--c-cceeeCCCCCCccc
Q 039497          413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA--VNGEF--N-GDIRQLTDGPWIDT  487 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~--~-~~~~~l~~~~~~~~  487 (642)
                            .|..   ..........+.+..+.+|+||-+++.....++..+|++--+  ..+..  . .....+........
T Consensus       403 ------~G~~---~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~  473 (557)
T PRK13615        403 ------DGVG---HPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPL  473 (557)
T ss_pred             ------CCce---EEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcce
Confidence                  2211   111111112246788999999999999876666667775332  23321  0 00122222233566


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                      ...|..+++.++.....+     ....++++.+.+....
T Consensus       474 sl~W~~~~~laVl~~~~~-----~~~~v~~v~v~g~~~~  507 (557)
T PRK13615        474 DATWVDELDVATLTLAPD-----GERQVELHQVGGPSKD  507 (557)
T ss_pred             eeEEcCCCEEEEEeccCC-----CCceEEEEECCCcccc
Confidence            789999887545443322     3456888888765443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.06  E-value=2.8  Score=38.64  Aligned_cols=145  Identities=12%  Similarity=0.083  Sum_probs=78.2

Q ss_pred             CccCcEECCCCCeEEEEeCCCC------ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSG------HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g------~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      +......+|||++..-+-...+      ...||.|-+. ++    +..+-..-...+.++|+.|-+.+||....+     
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~----v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln-----  179 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQ----VELIWNCVGISNGLAWDSDAKKFYYIDSLN-----  179 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccC-CC----ceeeehhccCCccccccccCcEEEEEccCc-----
Confidence            4455678999999543322211      3377777654 55    366666556667889999999999987754     


Q ss_pred             CceeEEEEeCCCCce---EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc
Q 039497          511 EAFSLYVIKPDGSGL---RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL  587 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  587 (642)
                      ....-|-||..+|..   +.+.......  +.+...+..+++..+|...+.+-+.+                 .++.+|+
T Consensus       180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~--~~e~~~PDGm~ID~eG~L~Va~~ng~-----------------~V~~~dp  240 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQ--PFESLEPDGMTIDTEGNLYVATFNGG-----------------TVQKVDP  240 (310)
T ss_pred             eEEeeeecCCCcccccCcceeEEeccCC--CcCCCCCCcceEccCCcEEEEEecCc-----------------EEEEECC
Confidence            222236677877743   2222211100  00000123345555565333333322                 7888888


Q ss_pred             CCCc-eeeccCCCCCCCCcEEecC
Q 039497          588 DGSG-LRRLTWNGYENGTPAWHPG  610 (642)
Q Consensus       588 ~~~~-~~~lt~~~~~~~~~~~s~d  610 (642)
                      .+|+ +..+--.--.+.+.+|---
T Consensus       241 ~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecCC
Confidence            7765 2222222233456677533

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=94.91  E-value=1.7  Score=43.30  Aligned_cols=146  Identities=14%  Similarity=0.193  Sum_probs=92.2

Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC----CccCcEECCCCC
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG----NNAFPSCSPDGK  448 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~SpDg~  448 (642)
                      +..-.++|...|..|+++.         ...-++.+..  .     ++     ..+.++....+    ....+.+.++| 
T Consensus       115 GRPLGl~f~~~ggdL~VaD---------AYlGL~~V~p--~-----g~-----~a~~l~~~~~G~~~kf~N~ldI~~~g-  172 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVAD---------AYLGLLKVGP--E-----GG-----LAELLADEAEGKPFKFLNDLDIDPEG-  172 (376)
T ss_pred             CCcceEEeccCCCeEEEEe---------cceeeEEECC--C-----CC-----cceeccccccCeeeeecCceeEcCCC-
Confidence            5566778888887777764         4555777766  3     23     34444433211    23345666644 


Q ss_pred             eEEEEeCC---------------CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497          449 FLVFRSGR---------------SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF  513 (642)
Q Consensus       449 ~l~~~~~~---------------~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~  513 (642)
                      .|+|+...               +...+|+++|..+...    +.|...-.-.+.++.|||+..+++......       
T Consensus       173 ~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~----~VLld~L~F~NGlaLS~d~sfvl~~Et~~~-------  241 (376)
T KOG1520|consen  173 VVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVT----KVLLDGLYFPNGLALSPDGSFVLVAETTTA-------  241 (376)
T ss_pred             eEEEeccccccchhheEEeeecCCCccceEEecCcccch----hhhhhcccccccccCCCCCCEEEEEeeccc-------
Confidence            45554321               1244799999887763    677666666788999999999999877543       


Q ss_pred             eEEEEeCCCCce---EEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497          514 SLYVIKPDGSGL---RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT  559 (642)
Q Consensus       514 ~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~  559 (642)
                      +|.+|-+++.+.   +.+.. +..+       .+..+.-+++|.+.+..
T Consensus       242 ri~rywi~g~k~gt~EvFa~-~LPG-------~PDNIR~~~~G~fWVal  282 (376)
T KOG1520|consen  242 RIKRYWIKGPKAGTSEVFAE-GLPG-------YPDNIRRDSTGHFWVAL  282 (376)
T ss_pred             eeeeeEecCCccCchhhHhh-cCCC-------CCcceeECCCCCEEEEE
Confidence            477777776554   33332 3444       56678889999755444

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=94.77  E-value=3.4  Score=44.65  Aligned_cols=143  Identities=13%  Similarity=0.203  Sum_probs=76.9

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCC----------CEEEEEEcCCCcccCC
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTE----------KHVIYTSTGPIFQSER  400 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg----------~~l~~~~~~~~~~~~~  400 (642)
                      ....|+|.| .|+|.+    ..-|.++|.-+-+..+...  ...+..+.|+|-.          ..+...+.     .-.
T Consensus        19 ~A~Dw~~~G-LiAygs----hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa-----D~~   88 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGS----HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA-----DIS   88 (1062)
T ss_pred             cccccCccc-eEEEec----CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEec-----ccc
Confidence            456899988 588854    4678888876655444333  4456667776632          22333322     125


Q ss_pred             CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEE---CCCCCeEEEEeCCCCceeEEEEECCCCcccccee
Q 039497          401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC---SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR  477 (642)
Q Consensus       401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~  477 (642)
                      +++-+|++..        .-     ....+..+. ..+..+.|   -+|.+.++.+-.  +...|.+|+.++|+.   .-
T Consensus        89 GrIil~d~~~--------~s-----~~~~l~~~~-~~~qdl~W~~~rd~Srd~LlaIh--~ss~lvLwntdtG~k---~W  149 (1062)
T KOG1912|consen   89 GRIILVDFVL--------AS-----VINWLSHSN-DSVQDLCWVPARDDSRDVLLAIH--GSSTLVLWNTDTGEK---FW  149 (1062)
T ss_pred             CcEEEEEehh--------hh-----hhhhhcCCC-cchhheeeeeccCcchheeEEec--CCcEEEEEEccCCce---ee
Confidence            6777777755        11     223333332 33344444   345555544432  566899999999984   22


Q ss_pred             eCCCCCCcccceeEec-CCCEEEEEecC
Q 039497          478 QLTDGPWIDTMPSWSP-KGDLIAFSSNR  504 (642)
Q Consensus       478 ~l~~~~~~~~~~~~sp-dG~~l~~~~~~  504 (642)
                      .-+........+.+.| |.+.+.+.+..
T Consensus       150 k~~ys~~iLs~f~~DPfd~rh~~~l~s~  177 (1062)
T KOG1912|consen  150 KYDYSHEILSCFRVDPFDSRHFCVLGSK  177 (1062)
T ss_pred             ccccCCcceeeeeeCCCCcceEEEEccC
Confidence            2222222333345555 44555555444

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=94.75  E-value=0.12  Score=40.12  Aligned_cols=71  Identities=15%  Similarity=0.211  Sum_probs=48.1

Q ss_pred             cEECCCCCeEEEEeCC---------------CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497          441 PSCSPDGKFLVFRSGR---------------SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       441 ~~~SpDg~~l~~~~~~---------------~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      +.+.+++..|+|+...               ....+|+.+|+.+++.    +.|..+-...+.++.|+|+..|+++....
T Consensus         3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~----~vl~~~L~fpNGVals~d~~~vlv~Et~~   78 (89)
T PF03088_consen    3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKET----TVLLDGLYFPNGVALSPDESFVLVAETGR   78 (89)
T ss_dssp             EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEE----EEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred             eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeE----EEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence            4566775567776532               2356999999999984    66666556678899999999999988754


Q ss_pred             CCCCCCceeEEEEeCCC
Q 039497          506 NPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       506 ~~~~~~~~~l~~~d~~~  522 (642)
                             .+|.++-++|
T Consensus        79 -------~Ri~rywl~G   88 (89)
T PF03088_consen   79 -------YRILRYWLKG   88 (89)
T ss_dssp             -------TEEEEEESSS
T ss_pred             -------ceEEEEEEeC
Confidence                   3588877764

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.73  E-value=4.2  Score=39.04  Aligned_cols=193  Identities=19%  Similarity=0.257  Sum_probs=100.8

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEEC--CCCCeeEEee-----cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKS--DGSKRWTLIK-----DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQ  404 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~--~~~~~~~l~~-----~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~  404 (642)
                      ...|.+-|++++..+. +  ..|-++|.  +++. ...+.     .+.+..+.|.+-  |+.|+.++.       +..+.
T Consensus        18 dVs~D~~GRRmAtCSs-D--q~vkI~d~~~~s~~-W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~-------Drtv~   86 (361)
T KOG2445|consen   18 DVSFDFYGRRMATCSS-D--QTVKIWDSTSDSGT-WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY-------DRTVS   86 (361)
T ss_pred             eeeecccCceeeeccC-C--CcEEEEeccCCCCc-eEEeeeEEecCCcEEEEEecCccccceEEEEec-------CCcee
Confidence            3477888999998765 3  44555553  3333 33332     667888888663  888888885       67788


Q ss_pred             EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCC-Ccc-----ccce
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVN-GEF-----NGDI  476 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~-g~~-----~~~~  476 (642)
                      ||.-..  +....++. + =.....|.+.. ..+..+.|.|-  |-.++..+ .+|.-+||  +.-. ...     ..++
T Consensus        87 iWEE~~--~~~~~~~~-~-Wv~~ttl~Dsr-ssV~DV~FaP~hlGLklA~~~-aDG~lRIY--EA~dp~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   87 IWEEQE--KSEEAHGR-R-WVRRTTLVDSR-SSVTDVKFAPKHLGLKLAAAS-ADGILRIY--EAPDPMNLSQWTLQHEI  158 (361)
T ss_pred             eeeecc--cccccccc-e-eEEEEEeecCC-cceeEEEecchhcceEEEEec-cCcEEEEE--ecCCccccccchhhhhh
Confidence            887532  10000011 0 00223344444 56777888875  33444443 23433333  3211 110     0001


Q ss_pred             eeCCCCC----CcccceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceE
Q 039497          477 RQLTDGP----WIDTMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVC  548 (642)
Q Consensus       477 ~~l~~~~----~~~~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~  548 (642)
                      ..+...+    .....+.|+|.   ..+|+..+.+.. +.-....||.++-.+.+...+... ++..       .+.++.
T Consensus       159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a-~~~~~~~Iye~~e~~rKw~kva~L~d~~d-------pI~di~  230 (361)
T KOG2445|consen  159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA-PHLNKVKIYEYNENGRKWLKVAELPDHTD-------PIRDIS  230 (361)
T ss_pred             hhccCCcccccCcceEEeeccccccCceEEEEcccCC-ccccceEEEEecCCcceeeeehhcCCCCC-------cceeee
Confidence            2222222    22344577763   356777776632 233455677776666555544332 3333       678999


Q ss_pred             EcCCC
Q 039497          549 FSADG  553 (642)
Q Consensus       549 ~S~Dg  553 (642)
                      |+|.-
T Consensus       231 wAPn~  235 (361)
T KOG2445|consen  231 WAPNI  235 (361)
T ss_pred             ecccc
Confidence            99963

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=94.72  E-value=4.5  Score=43.39  Aligned_cols=242  Identities=10%  Similarity=-0.026  Sum_probs=122.5

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE---Eee-----cCCceeeeeecCCCE--EEEEEcCCCcccCCCe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT---LIK-----DRTAFYNSWSPTEKH--VIYTSTGPIFQSERAT  402 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~---l~~-----~~~~~~~~~spdg~~--l~~~~~~~~~~~~~~~  402 (642)
                      ....|+|.-..++..+  ...++|.++|+..+....   +..     ...+..+.|..+-.-  ++.++.       ++.
T Consensus       246 ~~~~f~p~~p~ll~gG--~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss-------DG~  316 (555)
T KOG1587|consen  246 TCLKFCPFDPNLLAGG--CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS-------DGS  316 (555)
T ss_pred             eEEEeccCCcceEEee--ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec-------CCc
Confidence            4557777665565544  335788888887766421   111     445667778665433  665553       788


Q ss_pred             EEEEEEEeecCCCCCCCCCccccc---eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-----c
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCD---VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN-----G  474 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-----~  474 (642)
                      +..|.++....+.   .+..+...   .......  .....+.|.|-.-..++.....|  .|+.-+-.+.+..     +
T Consensus       317 i~~W~~~~l~~P~---e~~~~~~~~~~~~~~~~~--~~~t~~~F~~~~p~~FiVGTe~G--~v~~~~r~g~~~~~~~~~~  389 (555)
T KOG1587|consen  317 ICSWDTDMLSLPV---EGLLLESKKHKGQQSSKA--VGATSLKFEPTDPNHFIVGTEEG--KVYKGCRKGYTPAPEVSYK  389 (555)
T ss_pred             Eeeeeccccccch---hhcccccccccccccccc--cceeeEeeccCCCceEEEEcCCc--EEEEEeccCCccccccccc
Confidence            8888775411100   00000000   0000000  12334556553333223332233  5665444432210     0


Q ss_pred             ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497          475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       475 ~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      .......+.+.+..+.++|=+..++.+..+-        .+.+|..+- ...++.......      ..+.+++|||-.-
T Consensus       390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW--------~vriWs~~~-~~~Pl~~~~~~~------~~v~~vaWSptrp  454 (555)
T KOG1587|consen  390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDW--------TVRIWSEDV-IASPLLSLDSSP------DYVTDVAWSPTRP  454 (555)
T ss_pred             ccccccccCcceEeeecCCCccceeeeeccc--------eeEeccccC-CCCcchhhhhcc------ceeeeeEEcCcCc
Confidence            0112223445566778888777666655432        356665431 122232211111      1478899999987


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC---CCCCCCcEEecCCceEEeecCCC
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN---GYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~---~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      .++++....+                .|+.||+.-.....+...   .....-..|++.|+.++-....|
T Consensus       455 avF~~~d~~G----------------~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  455 AVFATVDGDG----------------NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG  508 (555)
T ss_pred             eEEEEEcCCC----------------ceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC
Confidence            7766665433                788888765443322221   22234668888899886655555

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=94.60  E-value=1.2  Score=43.96  Aligned_cols=63  Identities=11%  Similarity=0.043  Sum_probs=38.7

Q ss_pred             cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497          439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      ..+.+-.+...+...........+.++....+.    .+.+..+-..+..++||||++.|+++..++
T Consensus       111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~----~~~~lGhvSml~dVavS~D~~~IitaDRDE  173 (390)
T KOG3914|consen  111 TAISFIREDTSVLVADKAGDVYSFDILSADSGR----CEPILGHVSMLLDVAVSPDDQFIITADRDE  173 (390)
T ss_pred             ceeeeeeccceEEEEeecCCceeeeeecccccC----cchhhhhhhhhheeeecCCCCEEEEecCCc
Confidence            345555555565555433333345555544455    356665656678889999999888777665

>PRK13614 lipoprotein LpqB; Provisional

Probab=94.59  E-value=2.8  Score=45.14  Aligned_cols=172  Identities=13%  Similarity=0.085  Sum_probs=96.9

Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR  453 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~  453 (642)
                      .+.++..|+|++.+++...        ....++....        ++     ..+.+....  ....|+|.++| ++...
T Consensus       344 ~~~s~avS~~g~~~A~~~~--------~~~~l~~~~~--------g~-----~~~~~~~g~--~Lt~PS~d~~g-~vWtv  399 (573)
T PRK13614        344 GPASPAESPVSQTVAFLNG--------SRTTLYTVSP--------GQ-----PARALTSGS--TLTRPSFSPQD-WVWTA  399 (573)
T ss_pred             cccceeecCCCceEEEecC--------CCcEEEEecC--------CC-----cceeeecCC--CccCCcccCCC-CEEEe
Confidence            4667899999999998752        2345555544        23     344444433  57789999998 66544


Q ss_pred             eCCCCceeEEEEECC-CCccc-cceeeC--CCCCC-cccceeEecCCCEEEEEecCCCCCCCCceeEEEE--eC-CCCce
Q 039497          454 SGRSGHKNLFVLDAV-NGEFN-GDIRQL--TDGPW-IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI--KP-DGSGL  525 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~-~g~~~-~~~~~l--~~~~~-~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~--d~-~~~~~  525 (642)
                      . +.....|.++... +++.. .....+  ....+ .+..+..|+||-++++....+     +..+|++.  -- ..+..
T Consensus       400 ~-~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~G~P  473 (573)
T PRK13614        400 G-PGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQN-----GKSRVQVAGIVRNEDGTP  473 (573)
T ss_pred             e-CCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeC-----CccEEEEEEEEeCCCCCe
Confidence            3 3333366665543 22210 000011  11122 377889999999999887544     23335542  22 23444


Q ss_pred             EEeeec---CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497          526 RRIHVA---GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       526 ~~l~~~---~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                      +.|+..   ....       .+.++.|..++..++.+...++              ...++++.++++..+.+.
T Consensus       474 ~~L~~~~~~~~~~-------~~~sl~W~~~~sl~V~~~~~~~--------------~~~~~~v~v~~g~~~~l~  526 (573)
T PRK13614        474 RELTAPITLAADS-------DADTGAWVGDSTVVVTKASATS--------------NVVPELLSVDAGQPQQLA  526 (573)
T ss_pred             EEccCceecccCC-------CcceeEEcCCCEEEEEeccCCC--------------cceEEEEEeCCCCcccCC
Confidence            555431   1112       4678999999886666544332              236788888665544443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.55  E-value=1.5  Score=42.64  Aligned_cols=208  Identities=13%  Similarity=0.219  Sum_probs=103.5

Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcc------------------------ccceE
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI------------------------PCDVK  428 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------~~~~~  428 (642)
                      ..+..+.|-+++....|...     +.+.++.+|.+..  .+... .+..+                        ...++
T Consensus        85 EKinkIrw~~~~n~a~FLls-----tNdktiKlWKi~e--r~~k~-~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~pr  156 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLS-----TNDKTIKLWKIRE--RGSKK-EGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPR  156 (433)
T ss_pred             hhhhhceecCCCCccEEEEe-----cCCcceeeeeeec--ccccc-ccccccccCCCCccceeeceeeccccceeeeeee
Confidence            35667899998876655543     4588999999876  21100 00000                        00001


Q ss_pred             -EccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-----CcccceeEecCC-CEEEEE
Q 039497          429 -ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-----WIDTMPSWSPKG-DLIAFS  501 (642)
Q Consensus       429 -~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-----~~~~~~~~spdG-~~l~~~  501 (642)
                       .........+.++++..|+..++  +.++-+..||-+++..+...  +..+....     .-++...|+|.- +.++|.
T Consensus       157 Rv~aNaHtyhiNSIS~NsD~Et~l--SADdLRINLWnlei~d~sFn--IVDIKP~nmEeLteVITsaEFhp~~cn~f~YS  232 (433)
T KOG1354|consen  157 RVYANAHTYHINSISVNSDKETFL--SADDLRINLWNLEIIDQSFN--IVDIKPANMEELTEVITSAEFHPHHCNVFVYS  232 (433)
T ss_pred             eeccccceeEeeeeeecCccceEe--eccceeeeeccccccCCcee--EEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence             11111112344566666766544  33333445555554444320  11222211     123456788865 556777


Q ss_pred             ecCCCCCCCCceeEEEEeCCCCceE----EeeecCCCCCCCcc-----cccccceEEcCCCCEEEEEEecCCcccCCCCC
Q 039497          502 SNRHNPDNVEAFSLYVIKPDGSGLR----RIHVAGPEGSGDVD-----RERINHVCFSADGEWLLFTANLGAVMAEPVSW  572 (642)
Q Consensus       502 ~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~-----~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~  572 (642)
                      +..+.        |.+.|+....+.    .+....... .+..     -..+.++.||.+|++|+... ....       
T Consensus       233 SSKGt--------IrLcDmR~~aLCd~hsKlfEepedp-~~rsffseiIsSISDvKFs~sGryilsRD-yltv-------  295 (433)
T KOG1354|consen  233 SSKGT--------IRLCDMRQSALCDAHSKLFEEPEDP-SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTV-------  295 (433)
T ss_pred             cCCCc--------EEEeechhhhhhcchhhhhccccCC-cchhhHHHHhhhhhceEEccCCcEEEEec-ccee-------
Confidence            76665        899998743221    111100000 0000     01356899999999887554 2211       


Q ss_pred             CCCCCCCCcEEEEEcCCCceeeccCCC---------------CCCCCcEEecCCceEEee
Q 039497          573 PNQFQPYGDLYVVKLDGSGLRRLTWNG---------------YENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       573 ~~~~~~~~~l~~~~~~~~~~~~lt~~~---------------~~~~~~~~s~dg~~~~~~  617 (642)
                              .||-++.+.+.....+.+.               ..-..+.||-++.++++.
T Consensus       296 --------k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TG  347 (433)
T KOG1354|consen  296 --------KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTG  347 (433)
T ss_pred             --------EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecc
Confidence                    5665555555444333221               111457888888877764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=94.54  E-value=0.39  Score=44.68  Aligned_cols=70  Identities=17%  Similarity=0.090  Sum_probs=51.2

Q ss_pred             CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEE
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY  516 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~  516 (642)
                      .+..+.+-||+|.++.+.. +++.+||-  -++.+.   +..|..+...+..++||||-..++.++.+..        |-
T Consensus       253 Gv~gvrIRpD~KIlATAGW-D~RiRVys--wrtl~p---LAVLkyHsagvn~vAfspd~~lmAaaskD~r--------IS  318 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGW-DHRIRVYS--WRTLNP---LAVLKYHSAGVNAVAFSPDCELMAAASKDAR--------IS  318 (323)
T ss_pred             CccceEEccCCcEEeeccc-CCcEEEEE--eccCCc---hhhhhhhhcceeEEEeCCCCchhhhccCCce--------EE
Confidence            4567889999987776653 45445554  456765   6778888888899999999888888776653        66


Q ss_pred             EEeC
Q 039497          517 VIKP  520 (642)
Q Consensus       517 ~~d~  520 (642)
                      +|++
T Consensus       319 LWkL  322 (323)
T KOG0322|consen  319 LWKL  322 (323)
T ss_pred             eeec
Confidence            6654

>PRK13615 lipoprotein LpqB; Provisional

Probab=94.26  E-value=9.4  Score=41.13  Aligned_cols=163  Identities=9%  Similarity=-0.010  Sum_probs=91.6

Q ss_pred             cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCC
Q 039497          285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS  364 (642)
Q Consensus       285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~  364 (642)
                      ..++.|+||..+++....        ..+++.........+ .....-..|.|.++| ++..+.. .....+..... .+
T Consensus       337 ~s~avS~dg~~~A~v~~~--------~~l~vg~~~~~~~~~-~~~~~Lt~PS~d~~g-~vWtv~~-g~~~~l~~~~~-~G  404 (557)
T PRK13615        337 DAATLSADGRQAAVRNAS--------GVWSVGDGDRDAVLL-DTRPGLVAPSLDAQG-YVWSTPA-SDPRGLVAWGP-DG  404 (557)
T ss_pred             ccceEcCCCceEEEEcCC--------ceEEEecCCCcceee-ccCCccccCcCcCCC-CEEEEeC-CCceEEEEecC-CC
Confidence            578899999999888321        123333333221111 111123578999998 5555443 22333333333 33


Q ss_pred             CeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC--CccccceEEccccCCCCc
Q 039497          365 KRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR--EEIPCDVKILTKEETGNN  438 (642)
Q Consensus       365 ~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~  438 (642)
                      +...+..    ...+..+..|+||-++++....    .+..++.+..+..  +     ++  ..+......+.... ...
T Consensus       405 ~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~----~g~~~V~va~V~R--~-----~~~P~~L~~~p~~l~~~l-~~v  472 (557)
T PRK13615        405 VGHPVAVSWTATGRVVSLEVARDGARVLVQLET----GAGPQLLVASIVR--D-----GGVPTSLTTTPLELLASP-GTP  472 (557)
T ss_pred             ceEEeeccccCCCeeEEEEeCCCccEEEEEEec----CCCCEEEEEEEEe--C-----CCcceEeeeccEEcccCc-Ccc
Confidence            4333332    4568999999999999998642    3345677766655  2     22  01101223333333 456


Q ss_pred             cCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497          439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE  471 (642)
Q Consensus       439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~  471 (642)
                      ..+.|..+++.++......+..+++++.+.+..
T Consensus       473 ~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~~  505 (557)
T PRK13615        473 LDATWVDELDVATLTLAPDGERQVELHQVGGPS  505 (557)
T ss_pred             eeeEEcCCCEEEEEeccCCCCceEEEEECCCcc
Confidence            778999888755554333455688999988443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=94.06  E-value=0.4  Score=44.65  Aligned_cols=59  Identities=17%  Similarity=0.174  Sum_probs=40.8

Q ss_pred             ccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC-ceeeccCCCCCCCCcEEecCCceEEeecC
Q 039497          544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS-GLRRLTWNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       544 ~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lt~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      +..+.+-||+|.++...-++..               +||.|  .+. .+..|+.+...+..++||||..++++...
T Consensus       254 v~gvrIRpD~KIlATAGWD~Ri---------------RVysw--rtl~pLAVLkyHsagvn~vAfspd~~lmAaask  313 (323)
T KOG0322|consen  254 VSGVRIRPDGKILATAGWDHRI---------------RVYSW--RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASK  313 (323)
T ss_pred             ccceEEccCCcEEeecccCCcE---------------EEEEe--ccCCchhhhhhhhcceeEEEeCCCCchhhhccC
Confidence            4568999999977766655422               55555  443 35677777778889999999766654433

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.00  E-value=3.3  Score=44.31  Aligned_cols=95  Identities=15%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             eeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC----cceEeeCCeEEEEEecCCCceEEEEEe
Q 039497          146 SVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG----WPTWSGDSTIYFHRQADDGWWSIFRVS  221 (642)
Q Consensus       146 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~----~~~wspdg~~~~~~~~~~g~~~l~~~~  221 (642)
                      .++..+++|++....+            .||+++..+++.+.+.++...    ....|++..+++.. ...|...++.++
T Consensus        40 c~dst~~~l~~GsS~G------------~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAag-t~~g~V~v~ql~  106 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAG------------SVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAG-TASGRVSVFQLN  106 (726)
T ss_pred             EeecCCceEEEecccc------------eEEEEecCchhhhcccccCccceEEEEEecchhHhhhhh-cCCceEEeehhh
Confidence            4566789999988766            799999999988888774332    23666776666555 456767777776


Q ss_pred             cCCCcccccCCccceeeCCC----CCccccceeecCCcEEEEE
Q 039497          222 FPENLEFLGFPIAPTRVTPP----GVHCFTPAAFHDGKRLAVA  260 (642)
Q Consensus       222 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~SpdG~~l~~~  260 (642)
                      .....       ....++..    +..+....||+||+++++.
T Consensus       107 ~~~p~-------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysG  142 (726)
T KOG3621|consen  107 KELPR-------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSG  142 (726)
T ss_pred             ccCCC-------cceeeccccccCCceEEEEEecccccEEeec
Confidence            63221       22233332    3456778889999888873

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.97  E-value=4.3  Score=41.71  Aligned_cols=116  Identities=17%  Similarity=0.237  Sum_probs=63.4

Q ss_pred             EEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE-ECCC-CccccceeeCC----CC----CCcccceeEecCCCE
Q 039497          428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL-DAVN-GEFNGDIRQLT----DG----PWIDTMPSWSPKGDL  497 (642)
Q Consensus       428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~-d~~~-g~~~~~~~~l~----~~----~~~~~~~~~spdG~~  497 (642)
                      +.+...- .....+.+.++|  |+++.    ..+|+++ +.+. ++.-...+.|.    ..    ......+.|.|||+ 
T Consensus        65 ~vfa~~l-~~p~Gi~~~~~G--lyV~~----~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-  136 (367)
T TIGR02604        65 NVFAEEL-SMVTGLAVAVGG--VYVAT----PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-  136 (367)
T ss_pred             EEeecCC-CCccceeEecCC--EEEeC----CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-
Confidence            3444333 445678899988  54443    2368877 3321 11100012222    11    12345689999996 


Q ss_pred             EEEEecCCCC------------CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497          498 IAFSSNRHNP------------DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       498 l~~~~~~~~~------------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                      ||+.......            .......|++++.++++.+.+.. +..        ....++|+++|+. +++.+
T Consensus       137 LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-G~r--------np~Gl~~d~~G~l-~~tdn  202 (367)
T TIGR02604       137 LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-GFQ--------NPYGHSVDSWGDV-FFCDN  202 (367)
T ss_pred             EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-CcC--------CCccceECCCCCE-EEEcc
Confidence            6665442100            00112469999999988776653 333        3567899999975 45444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=93.97  E-value=0.17  Score=54.46  Aligned_cols=227  Identities=11%  Similarity=0.030  Sum_probs=117.0

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ..|...|++|+..++ +-...||-  .++..  .+..    .+.+...+.+.+.-.++..+.       +.-+++|.+..
T Consensus       196 a~fDrtg~~Iitgsd-d~lvKiwS--~et~~--~lAs~rGhs~ditdlavs~~n~~iaaaS~-------D~vIrvWrl~~  263 (1113)
T KOG0644|consen  196 AIFDRTGRYIITGSD-DRLVKIWS--METAR--CLASCRGHSGDITDLAVSSNNTMIAAASN-------DKVIRVWRLPD  263 (1113)
T ss_pred             eeeccccceEeecCc-cceeeeee--ccchh--hhccCCCCccccchhccchhhhhhhhccc-------CceEEEEecCC
Confidence            356777877766443 33344554  33332  2222    445666777666666665553       56789999865


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-----------------
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN-----------------  473 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-----------------  473 (642)
                              +.     .+..|..+. +.+..++|||=-     .+..+|.-.+|-+++..-..+                 
T Consensus       264 --------~~-----pvsvLrght-gavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~  324 (1113)
T KOG0644|consen  264 --------GA-----PVSVLRGHT-GAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF  324 (1113)
T ss_pred             --------Cc-----hHHHHhccc-cceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence                    22     455555665 778888888732     233334333433331110000                 


Q ss_pred             --------cceeeCCCCCCcccceeEecCCCEEEEEecCCCCC-----CCCceeEEEEeCCCCceEEeeecCCCCCCCcc
Q 039497          474 --------GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD-----NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD  540 (642)
Q Consensus       474 --------~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~-----~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  540 (642)
                              +..+..+...+.....+|...+  +.|........     .-....+++|++.++.+.++.. ++..     
T Consensus       325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd-----  396 (1113)
T KOG0644|consen  325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSD-----  396 (1113)
T ss_pred             cccccccccccCCcccccchhhHhhhhccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-cccc-----
Confidence                    0000111111111122343222  22222110000     0023446677777776555443 3333     


Q ss_pred             cccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC-CCCCCCcEEecCCceEEeec
Q 039497          541 RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN-GYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       541 ~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~-~~~~~~~~~s~dg~~~~~~~  618 (642)
                        ....+.+.|=..+++..+...+                .+.+||+-.+.+.+.... .+...+..||+||+.++-..
T Consensus       397 --~~yvLd~Hpfn~ri~msag~dg----------------st~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd  457 (1113)
T KOG0644|consen  397 --EVYVLDVHPFNPRIAMSAGYDG----------------STIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD  457 (1113)
T ss_pred             --ceeeeeecCCCcHhhhhccCCC----------------ceEeeecccCCcceeeecccceeeccccCCCCceEecCC
Confidence              4566778888888887776654                667777776665555442 35567889999998775443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=93.97  E-value=0.19  Score=54.10  Aligned_cols=85  Identities=15%  Similarity=0.112  Sum_probs=56.6

Q ss_pred             ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497          459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD  538 (642)
Q Consensus       459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  538 (642)
                      .-.+..|++.+|..   ...+..+......+.++|=...|+.....++.       ..+||+-.|...++...++.    
T Consensus       374 ~~~~~vwnl~~g~l---~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs-------t~iwdi~eg~pik~y~~gh~----  439 (1113)
T KOG0644|consen  374 DHRLCVWNLYTGQL---LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS-------TIIWDIWEGIPIKHYFIGHG----  439 (1113)
T ss_pred             eeEeeeeecccchh---hhhhcccccceeeeeecCCCcHhhhhccCCCc-------eEeeecccCCcceeeecccc----
Confidence            34677888888876   56666666666667888877777777665432       78888866655544433322    


Q ss_pred             cccccccceEEcCCCCEEEEEEe
Q 039497          539 VDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       539 ~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                          ...+-.||+||+.++....
T Consensus       440 ----kl~d~kFSqdgts~~lsd~  458 (1113)
T KOG0644|consen  440 ----KLVDGKFSQDGTSIALSDD  458 (1113)
T ss_pred             ----eeeccccCCCCceEecCCC
Confidence                2445678999888876654

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=93.87  E-value=0.74  Score=35.85  Aligned_cols=76  Identities=14%  Similarity=0.057  Sum_probs=47.1

Q ss_pred             eeEecCCCEEEEEecCCCCC----------CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEE
Q 039497          489 PSWSPKGDLIAFSSNRHNPD----------NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF  558 (642)
Q Consensus       489 ~~~spdG~~l~~~~~~~~~~----------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~  558 (642)
                      +..++++..|||+.....-.          ....-+|+.+|+.+++.+.+...-.         .++.+++|+|++.|++
T Consensus         3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~---------fpNGVals~d~~~vlv   73 (89)
T PF03088_consen    3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLY---------FPNGVALSPDESFVLV   73 (89)
T ss_dssp             EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEES---------SEEEEEE-TTSSEEEE
T ss_pred             eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCC---------ccCeEEEcCCCCEEEE
Confidence            45677755677776643210          2345679999999998877765321         3467999999999988


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                      +..-.                .+|..+-+.|
T Consensus        74 ~Et~~----------------~Ri~rywl~G   88 (89)
T PF03088_consen   74 AETGR----------------YRILRYWLKG   88 (89)
T ss_dssp             EEGGG----------------TEEEEEESSS
T ss_pred             EeccC----------------ceEEEEEEeC
Confidence            86543                2788776665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.75  E-value=9.8  Score=39.52  Aligned_cols=65  Identities=15%  Similarity=0.194  Sum_probs=39.3

Q ss_pred             CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497          446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG  524 (642)
Q Consensus       446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~  524 (642)
                      ++..|++...   ...|+.+|..+|+.   +-.... .......|...  +.+|++...++.        |+.+|.++|+
T Consensus       293 ~~~~vy~~~~---~g~l~ald~~tG~~---~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~--------l~~ld~~tG~  356 (394)
T PRK11138        293 DGGRIYLVDQ---NDRVYALDTRGGVE---LWSQSDLLHRLLTAPVLY--NGYLVVGDSEGY--------LHWINREDGR  356 (394)
T ss_pred             ECCEEEEEcC---CCeEEEEECCCCcE---EEcccccCCCcccCCEEE--CCEEEEEeCCCE--------EEEEECCCCC
Confidence            4567776653   34899999999874   221111 11223445543  456777665543        8999998887


Q ss_pred             eE
Q 039497          525 LR  526 (642)
Q Consensus       525 ~~  526 (642)
                      ..
T Consensus       357 ~~  358 (394)
T PRK11138        357 FV  358 (394)
T ss_pred             EE
Confidence            54

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=93.64  E-value=7.6  Score=37.93  Aligned_cols=69  Identities=19%  Similarity=0.150  Sum_probs=42.6

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------------cC---CceeeeeecCCCEEEEEEcCCCc
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------------DR---TAFYNSWSPTEKHVIYTSTGPIF  396 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------------~~---~~~~~~~spdg~~l~~~~~~~~~  396 (642)
                      ..+.||++|++|+....  -...||-++++.+.......             ..   .-....||-++..++..+.    
T Consensus       276 SDvKFs~sGryilsRDy--ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy----  349 (433)
T KOG1354|consen  276 SDVKFSHSGRYILSRDY--LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY----  349 (433)
T ss_pred             hceEEccCCcEEEEecc--ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc----
Confidence            45789999998876432  23556666666665444332             11   1235689988888877764    


Q ss_pred             ccCCCeEEEEEEEe
Q 039497          397 QSERATVQIARVSF  410 (642)
Q Consensus       397 ~~~~~~~~l~~~~~  410 (642)
                         ....+++.++.
T Consensus       350 ---~n~frvf~~~~  360 (433)
T KOG1354|consen  350 ---NNVFRVFNLAR  360 (433)
T ss_pred             ---cceEEEecCCC
Confidence               45566666543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.40  E-value=0.76  Score=48.88  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=68.7

Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      .++..+++|++...   .+.||+++..+++.+.+..   .+.+.....|++...+++.+.       .+.+.++.+..  
T Consensus        40 c~dst~~~l~~GsS---~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~-------~g~V~v~ql~~--  107 (726)
T KOG3621|consen   40 CVDATEEYLAMGSS---AGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTA-------SGRVSVFQLNK--  107 (726)
T ss_pred             EeecCCceEEEecc---cceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcC-------CceEEeehhhc--
Confidence            45666788888544   4789999988888766655   233445577888777777653       56666666644  


Q ss_pred             CCCCCCCCCccccceEEccccC---CCCccCcEECCCCCeEEEEeCCCCceeEEEEEC
Q 039497          413 DPSDDNNREEIPCDVKILTKEE---TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA  467 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~  467 (642)
                            ..   +.....++...   ...+..+.||+||+++++.. ..|.-.+..+|.
T Consensus       108 ------~~---p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD-~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  108 ------EL---PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD-SQGKVVLTELDS  155 (726)
T ss_pred             ------cC---CCcceeeccccccCCceEEEEEecccccEEeecC-CCceEEEEEech
Confidence                  11   11333333322   24678899999999987654 345444444443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.14  E-value=3.8  Score=45.73  Aligned_cols=138  Identities=14%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC-------EEEEEecCCCCCCCCceeEE
Q 039497          444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD-------LIAFSSNRHNPDNVEAFSLY  516 (642)
Q Consensus       444 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~-------~l~~~~~~~~~~~~~~~~l~  516 (642)
                      ....+.+++.... ....||.+|+..|+.   +..-..+. ...-..+.|+.+       ..++.-+.+        .|+
T Consensus       489 ~~~d~~mil~~~~-~~~~ly~mDLe~GKV---V~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n--------~lf  555 (794)
T PF08553_consen  489 HDQDRNMILLDPN-NPNKLYKMDLERGKV---VEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDN--------SLF  555 (794)
T ss_pred             hccccceEeecCC-CCCceEEEecCCCcE---EEEeecCC-CcceeEecccccccccCCCceEEEECCC--------ceE
Confidence            3344555555433 345899999999996   33332221 111223444321       112222222        399


Q ss_pred             EEeCCCCceEEeeecCCC-CCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eee
Q 039497          517 VIKPDGSGLRRIHVAGPE-GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRR  594 (642)
Q Consensus       517 ~~d~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~  594 (642)
                      +||+.-..-+.+...... ..+    ..+..++=+.+|. |++.+..|                 +|-+||.-|.. .+.
T Consensus       556 riDpR~~~~k~v~~~~k~Y~~~----~~Fs~~aTt~~G~-iavgs~~G-----------------~IRLyd~~g~~AKT~  613 (794)
T PF08553_consen  556 RIDPRLSGNKLVDSQSKQYSSK----NNFSCFATTEDGY-IAVGSNKG-----------------DIRLYDRLGKRAKTA  613 (794)
T ss_pred             EeccCCCCCceeeccccccccC----CCceEEEecCCce-EEEEeCCC-----------------cEEeecccchhhhhc
Confidence            999864332222211100 000    1345566677774 77777765                 67777755544 445


Q ss_pred             ccCCCCCCCCcEEecCCceEEe
Q 039497          595 LTWNGYENGTPAWHPGNQLDLG  616 (642)
Q Consensus       595 lt~~~~~~~~~~~s~dg~~~~~  616 (642)
                      |..-+..+..+..|.||+|+|+
T Consensus       614 lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  614 LPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             CCCCCCCeeEEEecCCCcEEEE
Confidence            5544566789999999999854

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.06  E-value=1.4  Score=49.01  Aligned_cols=143  Identities=12%  Similarity=0.097  Sum_probs=76.4

Q ss_pred             EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCC-------EEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEK-------HVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~-------~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      .+++... .....||.+|++.|+++.-.. ...+.-..+.|+.+       ..++.-       .+..+..|+...  . 
T Consensus       494 ~mil~~~-~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGl-------s~n~lfriDpR~--~-  562 (794)
T PF08553_consen  494 NMILLDP-NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGL-------SDNSLFRIDPRL--S-  562 (794)
T ss_pred             ceEeecC-CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEE-------CCCceEEeccCC--C-
Confidence            3444332 345789999999999877765 22222344555433       111111       134444444433  2 


Q ss_pred             CCCCCCCccc-cceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee-CCCCCCcccceeEe
Q 039497          415 SDDNNREEIP-CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDGPWIDTMPSWS  492 (642)
Q Consensus       415 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~~~~~~~~~~~s  492 (642)
                           +..+. .........  .....++-+.+| +||+.+.. |  .|.++|-- |+.   .+. |......+.++..+
T Consensus       563 -----~~k~v~~~~k~Y~~~--~~Fs~~aTt~~G-~iavgs~~-G--~IRLyd~~-g~~---AKT~lp~lG~pI~~iDvt  627 (794)
T PF08553_consen  563 -----GNKLVDSQSKQYSSK--NNFSCFATTEDG-YIAVGSNK-G--DIRLYDRL-GKR---AKTALPGLGDPIIGIDVT  627 (794)
T ss_pred             -----CCceeeccccccccC--CCceEEEecCCc-eEEEEeCC-C--cEEeeccc-chh---hhhcCCCCCCCeeEEEec
Confidence                 11100 011111111  233445667777 67777643 3  66667744 432   344 44444567888999


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeC
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKP  520 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~  520 (642)
                      .||+||+.+...-         |.+++.
T Consensus       628 ~DGkwilaTc~ty---------LlLi~t  646 (794)
T PF08553_consen  628 ADGKWILATCKTY---------LLLIDT  646 (794)
T ss_pred             CCCcEEEEeecce---------EEEEEE
Confidence            9999998887653         666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=92.99  E-value=14  Score=39.01  Aligned_cols=91  Identities=18%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             eEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497          355 GIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI  429 (642)
Q Consensus       355 ~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  429 (642)
                      ...+|+...++.+++..     ...+...+++|+.++++....       ++.+.+|+...               ....
T Consensus       237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~-------DgSiiLyD~~~---------------~~t~  294 (545)
T PF11768_consen  237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCE-------DGSIILYDTTR---------------GVTL  294 (545)
T ss_pred             EEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEec-------CCeEEEEEcCC---------------Ceee
Confidence            34555665555544432     567888899999999999985       78999999865               3344


Q ss_pred             ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497          430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE  471 (642)
Q Consensus       430 l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~  471 (642)
                      ++... -....++|+|||..+++.+.+   ++|..+|..-..
T Consensus       295 ~~ka~-~~P~~iaWHp~gai~~V~s~q---GelQ~FD~ALsp  332 (545)
T PF11768_consen  295 LAKAE-FIPTLIAWHPDGAIFVVGSEQ---GELQCFDMALSP  332 (545)
T ss_pred             eeeec-ccceEEEEcCCCcEEEEEcCC---ceEEEEEeecCc
Confidence            44444 556778999999888877743   377777765443

>PHA03098 kelch-like protein; Provisional

Probab=92.84  E-value=14  Score=40.15  Aligned_cols=113  Identities=6%  Similarity=-0.087  Sum_probs=56.7

Q ss_pred             eeEEEEECCCCccccceeeCCCCCCcc-cceeEecCCCEEEEEecCCC-CCCCCceeEEEEeCCCCceEEeeecCCCCCC
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTDGPWID-TMPSWSPKGDLIAFSSNRHN-PDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG  537 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~-~~~~~spdG~~l~~~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~  537 (642)
                      ..++.+|+.+++.    ..+...+... ......-+++ |+..+.... ........++++|+.+++.+.+......   
T Consensus       406 ~~v~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---  477 (534)
T PHA03098        406 KTVECFSLNTNKW----SKGSPLPISHYGGCAIYHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP---  477 (534)
T ss_pred             ceEEEEeCCCCee----eecCCCCccccCceEEEECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc---
Confidence            4789999998875    5554433211 1223334554 554443221 1001134599999998888776532211   


Q ss_pred             CcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497          538 DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW  597 (642)
Q Consensus       538 ~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~  597 (642)
                         +......  ..+++ |++.....+..           ....++.+|..+..-..+..
T Consensus       478 ---r~~~~~~--~~~~~-iyv~GG~~~~~-----------~~~~v~~yd~~~~~W~~~~~  520 (534)
T PHA03098        478 ---RINASLC--IFNNK-IYVVGGDKYEY-----------YINEIEVYDDKTNTWTLFCK  520 (534)
T ss_pred             ---cccceEE--EECCE-EEEEcCCcCCc-----------ccceeEEEeCCCCEEEecCC
Confidence               1111222  23555 44443222110           12378888888776555543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.74  E-value=3  Score=42.53  Aligned_cols=202  Identities=15%  Similarity=0.126  Sum_probs=80.2

Q ss_pred             cCCCCEEEE-Eec--CCCceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCC------Cccc-----
Q 039497          338 SPDGGLIVF-NHD--FELNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGP------IFQS-----  398 (642)
Q Consensus       338 spdg~~l~~-~~~--~~~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~------~~~~-----  398 (642)
                      -|+|+.++- ..+  .++...+.++|-++-+......     .....++.|.|--+.++.+..+.      .+..     
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence            567764443 222  3566789999988766554433     22355778888777665554321      0000     


Q ss_pred             --CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC-CccCcEE--CCCCCeEEEEeCCCCceeEEEEEC-CCCcc
Q 039497          399 --ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSC--SPDGKFLVFRSGRSGHKNLFVLDA-VNGEF  472 (642)
Q Consensus       399 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~--SpDg~~l~~~~~~~g~~~l~~~d~-~~g~~  472 (642)
                        =...+++|++..        ..     ..+.|.-++.+ ....+.|  .|+..+=+...-  -..+||++-. +.|+.
T Consensus       218 ~~yG~~l~vWD~~~--------r~-----~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W  282 (461)
T PF05694_consen  218 GKYGHSLHVWDWST--------RK-----LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEW  282 (461)
T ss_dssp             H-S--EEEEEETTT--------TE-----EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEE
T ss_pred             ccccCeEEEEECCC--------Cc-----EeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCe
Confidence              145788888754        11     33333333211 1223444  444443222221  2346766654 34443


Q ss_pred             c-cceeeCCCC-----------------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCC
Q 039497          473 N-GDIRQLTDG-----------------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGP  533 (642)
Q Consensus       473 ~-~~~~~l~~~-----------------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~  533 (642)
                      . +.+..+...                 +.-+..+..|.|.++||+..--.+       .|..||+..- +.+++-+--.
T Consensus       283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~G-------dvrqYDISDP~~Pkl~gqv~l  355 (461)
T PF05694_consen  283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHG-------DVRQYDISDPFNPKLVGQVFL  355 (461)
T ss_dssp             EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTT-------EEEEEE-SSTTS-EEEEEEE-
T ss_pred             eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCC-------cEEEEecCCCCCCcEEeEEEE
Confidence            1 112222211                 233566789999999998876443       4899999753 3333322100


Q ss_pred             CCCC--C----cc----cccccceEEcCCCCEEEEEEe
Q 039497          534 EGSG--D----VD----RERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       534 ~~~~--~----~~----~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                      .+..  .    ..    +..+.-+..|.||++||++..
T Consensus       356 GG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  356 GGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            0000  0    00    012346789999999999875

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=92.59  E-value=3  Score=42.46  Aligned_cols=261  Identities=10%  Similarity=0.047  Sum_probs=120.6

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee---------cCCCCcccCCeecC--CCCEEEEEEeecC
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT---------LNPNFHHYNPFVSA--NSEFIGYHRFRGE  304 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~---------~~~~~~~~~~~~sp--Dg~~l~~~~~~~~  304 (642)
                      .+|..+...+..+.|...|..|+.     ++....+.+||..         .++...+.+..|-|  +.+.|+....++.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~S-----gSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLAS-----GSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             hcccCCCCccceeeecccCceeec-----cCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            445555556667777788888887     4455588899982         23333344444554  3344555555444


Q ss_pred             CCCCCcccceEeeccCCCc-eeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cC---
Q 039497          305 STEGQSTIPHLEPVASPVK-ELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DR---  373 (642)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~---  373 (642)
                      ..      .......+... ...+.+.  .....+.-|+.-+-++..  .....++-+|+..+.......     ..   
T Consensus       211 vr------~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v  282 (559)
T KOG1334|consen  211 VR------VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFHIDLRQDVPAEKFVCREADEKERV  282 (559)
T ss_pred             ee------eeeeccccceecceecccccCccceeeecCCCCCccccc--ccccceeeeeeccCCccceeeeeccCCccce
Confidence            21      00011111100 0011111  112233444444333322  223444555555444332221     11   


Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR  453 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~  453 (642)
                      ....++..|-....+.+.      ..+.-.++|+...- +.+ ...+.--.+.+..|.......+..+++|.+|..|+..
T Consensus       283 ~L~~Ia~~P~nt~~faVg------G~dqf~RvYD~R~~-~~e-~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS  354 (559)
T KOG1334|consen  283 GLYTIAVDPRNTNEFAVG------GSDQFARVYDQRRI-DKE-ENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS  354 (559)
T ss_pred             eeeeEecCCCCccccccC------Chhhhhhhhcccch-hhc-cccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence            234455555444333332      12334455554320 000 0011000002222222222567778999999888777


Q ss_pred             eCCCCceeEEEEECCC--Cccc---c----ceeeCCCCC---Ccccce-eEecCCCEEEEEecCCCCCCCCceeEEEEeC
Q 039497          454 SGRSGHKNLFVLDAVN--GEFN---G----DIRQLTDGP---WIDTMP-SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP  520 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~~--g~~~---~----~~~~l~~~~---~~~~~~-~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~  520 (642)
                      .++.   .||++...-  |..+   .    .++++..+.   ..+..+ .|-|...+++-.++.+.        |++|+-
T Consensus       355 YnDe---~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh--------IFiW~K  423 (559)
T KOG1334|consen  355 YNDE---DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH--------IFIWDK  423 (559)
T ss_pred             eccc---ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccce--------EEEEec
Confidence            6543   678775432  3110   0    011111111   122333 67888888887777764        999998


Q ss_pred             CCCceEEe
Q 039497          521 DGSGLRRI  528 (642)
Q Consensus       521 ~~~~~~~l  528 (642)
                      +++++-++
T Consensus       424 ~t~eii~~  431 (559)
T KOG1334|consen  424 KTGEIIRF  431 (559)
T ss_pred             chhHHHHH
Confidence            88765433

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=92.54  E-value=1.2  Score=49.35  Aligned_cols=140  Identities=14%  Similarity=0.016  Sum_probs=90.6

Q ss_pred             EECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          442 SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       442 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      .+|++.-++++.+-   -.+|+.|....-+.   ...+..+.+....+.||-||++|+..+++..        +.+|+++
T Consensus       140 g~s~~~~~i~~gsv---~~~iivW~~~~dn~---p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs--------iRlW~i~  205 (967)
T KOG0974|consen  140 GDSAEELYIASGSV---FGEIIVWKPHEDNK---PIRLKGHEGSIFSIVTSLDGRYIASVSDDRS--------IRLWPID  205 (967)
T ss_pred             eccCcEEEEEeccc---cccEEEEeccccCC---cceecccCCceEEEEEccCCcEEEEEecCcc--------eeeeecc
Confidence            34555445554442   23677777762222   3457778888889999999999999988765        8888988


Q ss_pred             CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC-
Q 039497          522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY-  600 (642)
Q Consensus       522 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~-  600 (642)
                      +.+.-..+-.++..       ++.+..|.|.  +|+....+-                 -..+|..++.++..+..+.+ 
T Consensus       206 s~~~~~~~~fgHsa-------Rvw~~~~~~n--~i~t~gedc-----------------tcrvW~~~~~~l~~y~~h~g~  259 (967)
T KOG0974|consen  206 SREVLGCTGFGHSA-------RVWACCFLPN--RIITVGEDC-----------------TCRVWGVNGTQLEVYDEHSGK  259 (967)
T ss_pred             cccccCcccccccc-------eeEEEEeccc--eeEEeccce-----------------EEEEEecccceehhhhhhhhc
Confidence            87665545456666       7788889887  565555432                 34444566666665555432 


Q ss_pred             CCCCcEEecCCceEEeecCCC
Q 039497          601 ENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       601 ~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      .+...+..++.-+.++..+.+
T Consensus       260 ~iw~~~~~~~~~~~vT~g~Ds  280 (967)
T KOG0974|consen  260 GIWKIAVPIGVIIKVTGGNDS  280 (967)
T ss_pred             ceeEEEEcCCceEEEeeccCc
Confidence            345667766666666665544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.36  E-value=11  Score=38.03  Aligned_cols=183  Identities=17%  Similarity=0.080  Sum_probs=90.2

Q ss_pred             CCccCcEECCCCCeEEEEeCCCC---ceeEEEEECCC--Cccc----cceeeCCCCCC--------cccceeEecCCCEE
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSG---HKNLFVLDAVN--GEFN----GDIRQLTDGPW--------IDTMPSWSPKGDLI  498 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g---~~~l~~~d~~~--g~~~----~~~~~l~~~~~--------~~~~~~~spdG~~l  498 (642)
                      +....+.+.|++..++..+++..   ...+|...+..  +...    .....|....+        ....+++.++|. +
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-F   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-E
Confidence            44566788865555555555432   33566555543  1110    11122222211        334667877776 4


Q ss_pred             EEEecCCCCCCCCceeEEEEeCCCCceEEee-ecCCCC-----CCCcccccccceEEcCCCCEEEEEEecCCcccCCCCC
Q 039497          499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH-VAGPEG-----SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW  572 (642)
Q Consensus       499 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~-----~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~  572 (642)
                      +++...... ......|+.++.++...+.+. +.....     ........+..++++|||+.|++.....-....+...
T Consensus        99 ~is~E~~~~-~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRT-GGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccC-CCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            444433200 112467999999855544442 211100     0111123567899999999877665443110000000


Q ss_pred             CCCCCCCCcEEEEEcCCCc------eeeccC-----CCCCCCCcEEecCCceEEeecCCC
Q 039497          573 PNQFQPYGDLYVVKLDGSG------LRRLTW-----NGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       573 ~~~~~~~~~l~~~~~~~~~------~~~lt~-----~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      . .-.....|+.++.....      .-++..     ....+..+.+-+|+++|+--+.+.
T Consensus       178 ~-~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~  236 (326)
T PF13449_consen  178 P-DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFS  236 (326)
T ss_pred             c-ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCC
Confidence            0 00011367888876422      122322     234556789999998887666543

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=92.27  E-value=14  Score=40.64  Aligned_cols=197  Identities=13%  Similarity=0.115  Sum_probs=112.8

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec--CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD--RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      +.|.--.++|++...  ....|-...+.+.+.+.+...  .....++...-++.++++..      ...++.+..++-  
T Consensus      1030 idfDC~e~mvyWtDv--~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS------~lD~IevA~LdG-- 1099 (1289)
T KOG1214|consen 1030 IDFDCRERMVYWTDV--AGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDS------VLDKIEVALLDG-- 1099 (1289)
T ss_pred             eecccccceEEEeec--CCCccccccccCCCCceeecccCCCccceeeeeccceeeeecc------ccchhheeecCC--
Confidence            344444555555432  235677778888887766552  22334455455777877763      244555555532  


Q ss_pred             CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeE
Q 039497          413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSW  491 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~  491 (642)
                             .     ..+.|....-.....++..+=+..|+++........|-..++++...    +.|.+ .-+-.+.+.|
T Consensus      1100 -------~-----~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~Nr----Rilin~DigLPNGLtf 1163 (1289)
T KOG1214|consen 1100 -------S-----ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENR----RILINTDIGLPNGLTF 1163 (1289)
T ss_pred             -------c-----eeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccc----eEEeecccCCCCCcee
Confidence                   1     22333322214455677778888898887655667788888874332    44433 3344466788


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      .|..+.|-+......       +|--...++...+.+.. +..          ...++..+++.+|++.-+.+       
T Consensus      1164 dpfs~~LCWvDAGt~-------rleC~~p~g~gRR~i~~-~Lq----------YPF~itsy~~~fY~TDWk~n------- 1218 (1289)
T KOG1214|consen 1164 DPFSKLLCWVDAGTK-------RLECTLPDGTGRRVIQN-NLQ----------YPFSITSYADHFYHTDWKRN------- 1218 (1289)
T ss_pred             CcccceeeEEecCCc-------ceeEecCCCCcchhhhh-ccc----------CceeeeeccccceeeccccC-------
Confidence            888887776665442       24444444433333322 211          34566778888888875432       


Q ss_pred             CCCCCCCCCcEEEEEcCCCc
Q 039497          572 WPNQFQPYGDLYVVKLDGSG  591 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~  591 (642)
                               .|..+++-+++
T Consensus      1219 ---------~vvsv~~~~~~ 1229 (1289)
T KOG1214|consen 1219 ---------GVVSVNKHSGQ 1229 (1289)
T ss_pred             ---------ceEEeeccccc
Confidence                     78888776654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=92.12  E-value=5.4  Score=44.60  Aligned_cols=150  Identities=15%  Similarity=0.049  Sum_probs=90.1

Q ss_pred             EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCC---ceee--eeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRT---AFYN--SWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~---~~~~--~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      +.-+.++++....   .+.+++++...+....-.. ...   ....  ..+++.=+++..+       .-+.+.+|....
T Consensus        95 l~~e~k~i~l~~~---~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs-------v~~~iivW~~~~  164 (967)
T KOG0974|consen   95 LFEENKKIALVTS---RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS-------VFGEIIVWKPHE  164 (967)
T ss_pred             hhhhcceEEEEEc---CceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc-------ccccEEEEeccc
Confidence            3444556666543   4677777776654332222 110   1112  2333333333332       356677777653


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee-eCCCCCCcccce
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMP  489 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~-~l~~~~~~~~~~  489 (642)
                        +      .     ....+..++ +....+.||-||++++..+++   ..+.+|++++++.   .. ....++..+...
T Consensus       165 --d------n-----~p~~l~GHe-G~iF~i~~s~dg~~i~s~SdD---RsiRlW~i~s~~~---~~~~~fgHsaRvw~~  224 (967)
T KOG0974|consen  165 --D------N-----KPIRLKGHE-GSIFSIVTSLDGRYIASVSDD---RSIRLWPIDSREV---LGCTGFGHSARVWAC  224 (967)
T ss_pred             --c------C-----CcceecccC-CceEEEEEccCCcEEEEEecC---cceeeeecccccc---cCcccccccceeEEE
Confidence              2      2     344677777 888899999999999988854   3677888887764   22 233456667778


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                      .+.|.  +|+..+.+-.        +.+|+.++..++
T Consensus       225 ~~~~n--~i~t~gedct--------crvW~~~~~~l~  251 (967)
T KOG0974|consen  225 CFLPN--RIITVGEDCT--------CRVWGVNGTQLE  251 (967)
T ss_pred             Eeccc--eeEEeccceE--------EEEEecccceeh
Confidence            88988  6776665543        666766665555

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.95  E-value=9.9  Score=38.76  Aligned_cols=139  Identities=13%  Similarity=0.042  Sum_probs=83.9

Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCee-EEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-TLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      .|-.|.++..|....++ ..=|+..--+.... ....  .+.+.++.||+|.+.|++...       +..+.++....  
T Consensus        28 vFfDDaNkqlfavrSgg-atgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~-------~~~v~f~nf~~--   97 (657)
T KOG2377|consen   28 VFFDDANKQLFAVRSGG-ATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRT-------SKTVDFCNFIP--   97 (657)
T ss_pred             eeeccCcceEEEEecCC-eeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEec-------CceEEEEecCC--
Confidence            55566666666544222 22233322222211 1111  567899999999999988864       56777777633  


Q ss_pred             CCCCCCCCCccccceEEcc----ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccc
Q 039497          413 DPSDDNNREEIPCDVKILT----KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM  488 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~  488 (642)
                      +      .     ....+.    ... ..+-.+.|+. ...+++.++.  ..++|..+.....    ++.+......+..
T Consensus        98 d------~-----~~l~~~~~ck~k~-~~IlGF~W~~-s~e~A~i~~~--G~e~y~v~pekrs----lRlVks~~~nvnW  158 (657)
T KOG2377|consen   98 D------N-----SQLEYTQECKTKN-ANILGFCWTS-STEIAFITDQ--GIEFYQVLPEKRS----LRLVKSHNLNVNW  158 (657)
T ss_pred             C------c-----hhhHHHHHhccCc-ceeEEEEEec-CeeEEEEecC--CeEEEEEchhhhh----hhhhhhcccCccE
Confidence            2      1     111111    111 2355678884 4889988763  3588888876444    4666666677888


Q ss_pred             eeEecCCCEEEEEec
Q 039497          489 PSWSPKGDLIAFSSN  503 (642)
Q Consensus       489 ~~~spdG~~l~~~~~  503 (642)
                      ..|.++-+.++..+.
T Consensus       159 y~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  159 YMYCPETAVILLSTT  173 (657)
T ss_pred             EEEccccceEeeecc
Confidence            899999887766655

>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]

Probab=91.83  E-value=8.7  Score=41.02  Aligned_cols=55  Identities=22%  Similarity=0.327  Sum_probs=36.6

Q ss_pred             eeCCCCCCcccc---eeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEeeecCCC
Q 039497          477 RQLTDGPWIDTM---PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRIHVAGPE  534 (642)
Q Consensus       477 ~~l~~~~~~~~~---~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~  534 (642)
                      ..|+.+.+.+..   +....--+.++|.+....+   -..+||+.... .|+..+++..+..
T Consensus       494 ~altSgeweVl~r~Gi~VdE~~~LVYf~gt~d~P---lE~hLyvvsye~~g~~~rlt~~g~s  552 (867)
T KOG2281|consen  494 IALTSGEWEVLARHGIWVDEVRKLVYFVGTKDTP---LEHHLYVVSYENPGEIARLTEPGYS  552 (867)
T ss_pred             eeecccceeehhhcCeeecccceEEEEEccCCCC---ceeeEEEEEEecCCceeeccCCCcc
Confidence            445555544322   3345555677888777654   77899999997 7888888876543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.69  E-value=3.8  Score=40.31  Aligned_cols=160  Identities=19%  Similarity=0.290  Sum_probs=81.4

Q ss_pred             CEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497          342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE  421 (642)
Q Consensus       342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  421 (642)
                      +.++|+.+ .+...|.++|+.+++.+++...      .+.++....-+.-.+                            
T Consensus        77 ~~~aYItD-~~~~glIV~dl~~~~s~Rv~~~------~~~~~p~~~~~~i~g----------------------------  121 (287)
T PF03022_consen   77 DGFAYITD-SGGPGLIVYDLATGKSWRVLHN------SFSPDPDAGPFTIGG----------------------------  121 (287)
T ss_dssp             SEEEEEEE-TTTCEEEEEETTTTEEEEEETC------GCTTS-SSEEEEETT----------------------------
T ss_pred             ceEEEEeC-CCcCcEEEEEccCCcEEEEecC------CcceeccccceeccC----------------------------
Confidence            46788776 4456999999999998888653      233333322222211                            


Q ss_pred             ccccceEEccccCCCCccCcEE---CCCCCeEEEEeCCCCceeEEEEECC---CCccc------cceeeCCCCCCcccce
Q 039497          422 EIPCDVKILTKEETGNNAFPSC---SPDGKFLVFRSGRSGHKNLFVLDAV---NGEFN------GDIRQLTDGPWIDTMP  489 (642)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~~---SpDg~~l~~~~~~~g~~~l~~~d~~---~g~~~------~~~~~l~~~~~~~~~~  489 (642)
                          .......    ....++.   ++||++|+|.....  ..+|.+..+   .....      ..++.+-.........
T Consensus       122 ----~~~~~~d----g~~gial~~~~~d~r~LYf~~lss--~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~  191 (287)
T PF03022_consen  122 ----ESFQWPD----GIFGIALSPISPDGRWLYFHPLSS--RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM  191 (287)
T ss_dssp             ----EEEEETT----SEEEEEE-TTSTTS-EEEEEETT---SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred             ----ceEecCC----CccccccCCCCCCccEEEEEeCCC--CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence                0011111    1222333   45999999987532  368887752   11110      0112222111123456


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCC----CceEEeeecCC-CCCCCcccccccceEEcC--CCCEEEEEEec
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG----SGLRRIHVAGP-EGSGDVDRERINHVCFSA--DGEWLLFTANL  562 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~----~~~~~l~~~~~-~~~~~~~~~~~~~~~~S~--Dg~~l~~~~~~  562 (642)
                      +.+++|. |+|+.-..+       .|+.|+.++    .+.+.+..... -.       .+..+.+.+  +|. |++.+++
T Consensus       192 ~~D~~G~-ly~~~~~~~-------aI~~w~~~~~~~~~~~~~l~~d~~~l~-------~pd~~~i~~~~~g~-L~v~snr  255 (287)
T PF03022_consen  192 AIDPNGN-LYFTDVEQN-------AIGCWDPDGPYTPENFEILAQDPRTLQ-------WPDGLKIDPEGDGY-LWVLSNR  255 (287)
T ss_dssp             EEETTTE-EEEEECCCT-------EEEEEETTTSB-GCCEEEEEE-CC-GS-------SEEEEEE-T--TS--EEEEE-S
T ss_pred             EECCCCc-EEEecCCCC-------eEEEEeCCCCcCccchheeEEcCceee-------ccceeeeccccCce-EEEEECc
Confidence            7888775 666665443       499999987    34555554322 11       345667766  554 6666543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.54  E-value=15  Score=36.13  Aligned_cols=135  Identities=16%  Similarity=0.189  Sum_probs=71.6

Q ss_pred             eEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC--------------------cccceeEe---cCCCEEEEEecCC
Q 039497          449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW--------------------IDTMPSWS---PKGDLIAFSSNRH  505 (642)
Q Consensus       449 ~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~--------------------~~~~~~~s---pdG~~l~~~~~~~  505 (642)
                      .++|.++.. ...|.++|+.+|+.    ..+.....                    ....++.+   +||++|||....+
T Consensus        78 ~~aYItD~~-~~glIV~dl~~~~s----~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss  152 (287)
T PF03022_consen   78 GFAYITDSG-GPGLIVYDLATGKS----WRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS  152 (287)
T ss_dssp             EEEEEEETT-TCEEEEEETTTTEE----EEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-
T ss_pred             eEEEEeCCC-cCcEEEEEccCCcE----EEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC
Confidence            577776543 34899999999885    33322110                    01223444   4888888887654


Q ss_pred             CCCCCCceeEEEEeCC---CC----------ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCC
Q 039497          506 NPDNVEAFSLYVIKPD---GS----------GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW  572 (642)
Q Consensus       506 ~~~~~~~~~l~~~d~~---~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~  572 (642)
                      .       ++|.+..+   ..          +.+.+-...  .       .....+.+++|. |||+.-..         
T Consensus       153 ~-------~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~--~-------~s~g~~~D~~G~-ly~~~~~~---------  206 (287)
T PF03022_consen  153 R-------KLYRVPTSVLRDPSLSDAQALASQVQDLGDKG--S-------QSDGMAIDPNGN-LYFTDVEQ---------  206 (287)
T ss_dssp             S-------EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------------SECEEEEETTTE-EEEEECCC---------
T ss_pred             C-------cEEEEEHHHhhCccccccccccccceeccccC--C-------CCceEEECCCCc-EEEecCCC---------
Confidence            3       37776532   11          112221111  1       234577888764 66666443         


Q ss_pred             CCCCCCCCcEEEEEcCC----CceeeccCCCC---CCCCcEEec--CCceEEeecCCC
Q 039497          573 PNQFQPYGDLYVVKLDG----SGLRRLTWNGY---ENGTPAWHP--GNQLDLGKLRLE  621 (642)
Q Consensus       573 ~~~~~~~~~l~~~~~~~----~~~~~lt~~~~---~~~~~~~s~--dg~~~~~~~~~~  621 (642)
                             ..|+.|+.++    .....|.....   +..++.+.+  +|.+++.+-++.
T Consensus       207 -------~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~  257 (287)
T PF03022_consen  207 -------NAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQ  257 (287)
T ss_dssp             -------TEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--
T ss_pred             -------CeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcch
Confidence                   2899999887    34444554433   345778888  887776655544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.14  E-value=0.39  Score=30.53  Aligned_cols=36  Identities=22%  Similarity=0.376  Sum_probs=28.8

Q ss_pred             eeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEe
Q 039497          476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK  519 (642)
Q Consensus       476 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d  519 (642)
                      +..+..+...+..++|+|+++.|+..+.++.        |++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~--------i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGT--------IRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSE--------EEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCE--------EEEEC
Confidence            4556667778899999999999999887764        77775

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=91.12  E-value=9.7  Score=40.93  Aligned_cols=39  Identities=31%  Similarity=0.555  Sum_probs=26.3

Q ss_pred             EEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497          515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       515 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      ++..+...++++++.......       .+.-+.|+|||+.|++.-
T Consensus       482 ~~~~~~~~g~~~rf~~~P~ga-------E~tG~~fspDg~tlFvni  520 (524)
T PF05787_consen  482 VWAYDPDTGELKRFLVGPNGA-------EITGPCFSPDGRTLFVNI  520 (524)
T ss_pred             eeeccccccceeeeccCCCCc-------ccccceECCCCCEEEEEE
Confidence            445566667777766433222       567899999999987754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=90.79  E-value=9.5  Score=37.26  Aligned_cols=169  Identities=9%  Similarity=0.092  Sum_probs=91.0

Q ss_pred             CCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC-CCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497          400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD-GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ  478 (642)
Q Consensus       400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~  478 (642)
                      .+.++||+..+        ++     ..+.+...+ .....+.|..+ +-..++...-+|  .|.+||+.+... .....
T Consensus        49 ngsv~lyd~~t--------g~-----~l~~fk~~~-~~~N~vrf~~~ds~h~v~s~ssDG--~Vr~wD~Rs~~e-~a~~~  111 (376)
T KOG1188|consen   49 NGSVRLYDKGT--------GQ-----LLEEFKGPP-ATTNGVRFISCDSPHGVISCSSDG--TVRLWDIRSQAE-SARIS  111 (376)
T ss_pred             CCeEEEEeccc--------hh-----hhheecCCC-CcccceEEecCCCCCeeEEeccCC--eEEEEEeecchh-hhhee
Confidence            67888888766        33     444554444 44445566543 445555554444  677777765432 00112


Q ss_pred             CCCCCCcccceeEec--CCCEEEEEecCCCCCCCCceeEEEEeCCCCce--EEeeecCCCCCCCcccccccceEEcCCCC
Q 039497          479 LTDGPWIDTMPSWSP--KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL--RRIHVAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       479 l~~~~~~~~~~~~sp--dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      .+..+. .....+.-  .++.|+.......    ....|++||+...+.  +.+. ..+..       .++.+.|.|..-
T Consensus       112 ~~~~~~-~~f~~ld~nck~~ii~~GtE~~~----s~A~v~lwDvR~~qq~l~~~~-eSH~D-------DVT~lrFHP~~p  178 (376)
T KOG1188|consen  112 WTQQSG-TPFICLDLNCKKNIIACGTELTR----SDASVVLWDVRSEQQLLRQLN-ESHND-------DVTQLRFHPSDP  178 (376)
T ss_pred             ccCCCC-CcceEeeccCcCCeEEecccccc----CceEEEEEEeccccchhhhhh-hhccC-------cceeEEecCCCC
Confidence            222221 12223333  4455554433221    456799999875433  2222 23333       478899999776


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC----ceeeccCCCCCCCCcEEecCC--ceE
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS----GLRRLTWNGYENGTPAWHPGN--QLD  614 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~lt~~~~~~~~~~~s~dg--~~~  614 (642)
                      -++.+..-.+.                +-++|+...    .+..+..++..+..+.|+.++  +.+
T Consensus       179 nlLlSGSvDGL----------------vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~  228 (376)
T KOG1188|consen  179 NLLLSGSVDGL----------------VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIM  228 (376)
T ss_pred             CeEEeecccce----------------EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEE
Confidence            66666554443                334454432    244445566667889999998  544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.60  E-value=16  Score=34.90  Aligned_cols=188  Identities=14%  Similarity=0.141  Sum_probs=97.7

Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      .+..||. |+-....-+...|..+|+++++..+... +.....--..--+.+|+-....      .+...+|+.+.    
T Consensus        51 ~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~t----  119 (264)
T PF05096_consen   51 EFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK------EGTGFVYDPNT----  119 (264)
T ss_dssp             EEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS------SSEEEEEETTT----
T ss_pred             EecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec------CCeEEEEcccc----
Confidence            4545553 3333334677899999999998655444 3332222222225567777643      55566666532    


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC--CCCCC---cccce
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL--TDGPW---IDTMP  489 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l--~~~~~---~~~~~  489 (642)
                           -+    ....+.-..  .-+.++  .||+.|+.+.   |...|+.+|.++=+.   .+.+  +....   ..+..
T Consensus       120 -----l~----~~~~~~y~~--EGWGLt--~dg~~Li~SD---GS~~L~~~dP~~f~~---~~~i~V~~~g~pv~~LNEL  180 (264)
T PF05096_consen  120 -----LK----KIGTFPYPG--EGWGLT--SDGKRLIMSD---GSSRLYFLDPETFKE---VRTIQVTDNGRPVSNLNEL  180 (264)
T ss_dssp             -----TE----EEEEEE-SS--S--EEE--ECSSCEEEE----SSSEEEEE-TTT-SE---EEEEE-EETTEE---EEEE
T ss_pred             -----ce----EEEEEecCC--cceEEE--cCCCEEEEEC---CccceEEECCcccce---EEEEEEEECCEECCCcEeE
Confidence                 10    233332221  222333  6888877654   667999999876554   2332  22221   23345


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-------CCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-------PEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      .|- +|. |+..--       ....|.++|..+|+...+....       .......+..-.+-++|.|.++.|+++...
T Consensus       181 E~i-~G~-IyANVW-------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  181 EYI-NGK-IYANVW-------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             EEE-TTE-EEEEET-------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             EEE-cCE-EEEEeC-------CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            565 563 433322       2346999999999887655320       000000001134678999999999888754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=89.88  E-value=24  Score=38.84  Aligned_cols=181  Identities=13%  Similarity=0.093  Sum_probs=104.1

Q ss_pred             cCCCCEEEEEecCCCceeEEEEECCCCCeeE------Eee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWT------LIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~------l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ++-|.+|+|..    ..+|..+.+++.+..+      |.. ...+..+.|.=-.+.++++.-        ..-.|-...+
T Consensus       987 ~~~gt~LL~aq----g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv--------~g~SI~rasL 1054 (1289)
T KOG1214|consen  987 PSVGTFLLYAQ----GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDV--------AGRSISRASL 1054 (1289)
T ss_pred             CCCcceEEEec----cceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeec--------CCCccccccc
Confidence            45578888854    4788888887765433      111 344556677666666666542        1122222333


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC-CCCCCcccce
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL-TDGPWIDTMP  489 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l-~~~~~~~~~~  489 (642)
                        +     ++     +.+.+....-.....+++.--++-|+++........+-++|   |+.   .+.| +..-.+...+
T Consensus      1055 --~-----G~-----Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~Ld---G~~---rkvLf~tdLVNPR~i 1116 (1289)
T KOG1214|consen 1055 --E-----GA-----EPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLD---GSE---RKVLFYTDLVNPRAI 1116 (1289)
T ss_pred             --c-----CC-----CCceeecccCCCccceeeeeccceeeeeccccchhheeecC---Cce---eeEEEeecccCcceE
Confidence              2     22     33333332212333455544567777776544444444444   332   2333 3333344567


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                      ...+=+..||++.-..     ....|-..++++++.+.+...+..        -...+.|.|..+.|.+...
T Consensus      1117 v~D~~rgnLYwtDWnR-----enPkIets~mDG~NrRilin~Dig--------LPNGLtfdpfs~~LCWvDA 1175 (1289)
T KOG1214|consen 1117 VVDPIRGNLYWTDWNR-----ENPKIETSSMDGENRRILINTDIG--------LPNGLTFDPFSKLLCWVDA 1175 (1289)
T ss_pred             EeecccCceeeccccc-----cCCcceeeccCCccceEEeecccC--------CCCCceeCcccceeeEEec
Confidence            7888788888876543     345688899999888777664432        3456889999888877754

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.67  E-value=24  Score=35.46  Aligned_cols=110  Identities=17%  Similarity=0.178  Sum_probs=62.8

Q ss_pred             eeEEEEECCCCCeeEEe----------------ecCCceeeeeecCCCEEEEEEcCCCcccCCC-------eEEEEEEEe
Q 039497          354 AGIKIAKSDGSKRWTLI----------------KDRTAFYNSWSPTEKHVIYTSTGPIFQSERA-------TVQIARVSF  410 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~----------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~-------~~~l~~~~~  410 (642)
                      ..|+.++.++.....+.                .+.....++++|||+.|+.+...........       ..+|+.++.
T Consensus       112 p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~  191 (326)
T PF13449_consen  112 PRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDP  191 (326)
T ss_pred             CEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecC
Confidence            77888887754433321                1456778999999998888776543322222       266777765


Q ss_pred             ecCCCCCCCCCccccceEEcccc----CCCCccCcEECCCCCeEEEEeC----CCCceeEEEEECCC
Q 039497          411 QLDPSDDNNREEIPCDVKILTKE----ETGNNAFPSCSPDGKFLVFRSG----RSGHKNLFVLDAVN  469 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~SpDg~~l~~~~~----~~g~~~l~~~d~~~  469 (642)
                      ...      +.....-..++...    ....+..+.+-+|++.|+....    ......||.+++..
T Consensus       192 ~~~------~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~  252 (326)
T PF13449_consen  192 KTP------GEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD  252 (326)
T ss_pred             CCC------CccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence            111      10000011222210    1245667888899987666543    22356899999764

>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]

Probab=89.24  E-value=34  Score=36.59  Aligned_cols=51  Identities=12%  Similarity=0.036  Sum_probs=35.1

Q ss_pred             eeecCCcEEEEEEeccCCceeeEEEEEeecCCCC----cc-cCCeecCCCCEEEEE
Q 039497          249 AAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNF----HH-YNPFVSANSEFIGYH  299 (642)
Q Consensus       249 ~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~----~~-~~~~~spDg~~l~~~  299 (642)
                      +.+||++++++.-..+|+....++.+|+.++.-.    .. ....|..++..++..
T Consensus       116 s~~~~~~R~l~s~S~gG~D~~~~re~Dlet~~fv~~~~f~~~~~~wld~d~~~~~~  171 (648)
T COG1505         116 SVLPDGTRLLYSLSIGGSDAGITREFDLETGEFVEEEGFKFPGISWLDDDGVFVSR  171 (648)
T ss_pred             eeCCCCCEEEEEecCCCCcceEEEEEEecccccccCCCccccceEEecCCCEEEec
Confidence            3458999999988888888999999999654211    11 125677777544443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.59  E-value=0.69  Score=29.30  Aligned_cols=36  Identities=11%  Similarity=0.169  Sum_probs=29.9

Q ss_pred             eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEE
Q 039497           36 EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQ   73 (642)
Q Consensus        36 ~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~   73 (642)
                      ...+..|.+......|+ |+++.|+ ++..++...||.
T Consensus         4 ~~~~~~h~~~i~~i~~~-~~~~~~~-s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWS-PDGNFLA-SGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEE-TTSSEEE-EEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEe-cccccce-eeCCCCEEEEEC
Confidence            46788999999999999 9999888 555688888873

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.25  E-value=17  Score=39.84  Aligned_cols=169  Identities=14%  Similarity=0.137  Sum_probs=89.5

Q ss_pred             CCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                      ++.++|...   .+.+++++.++.....+.....      .-+|++++.++.       ++.+.|..+..        +.
T Consensus        49 ~~~~~~GtH---~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~-------DGkv~I~sl~~--------~~  104 (846)
T KOG2066|consen   49 DKFFALGTH---RGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSD-------DGKVVIGSLFT--------DD  104 (846)
T ss_pred             cceeeeccc---cceEEEEecCCccccccccccc------ccCCceEEEecC-------CCcEEEeeccC--------Cc
Confidence            566777433   3567777776654121211111      457888888874       56666666544        12


Q ss_pred             CccccceEEccccCCCCccCcEECCC-----CCeEEEEeCCCCceeEEEEECC-CCccccceeeCCCCCCcccceeEecC
Q 039497          421 EEIPCDVKILTKEETGNNAFPSCSPD-----GKFLVFRSGRSGHKNLFVLDAV-NGEFNGDIRQLTDGPWIDTMPSWSPK  494 (642)
Q Consensus       421 ~~~~~~~~~l~~~~~~~~~~~~~SpD-----g~~l~~~~~~~g~~~l~~~d~~-~g~~~~~~~~l~~~~~~~~~~~~spd  494 (642)
                           ....+.-.  .....++++||     .++++ +...   ..|+++.-. =|..  ....+....+.+..+.|.  
T Consensus       105 -----~~~~~df~--rpiksial~Pd~~~~~sk~fv-~GG~---aglvL~er~wlgnk--~~v~l~~~eG~I~~i~W~--  169 (846)
T KOG2066|consen  105 -----EITQYDFK--RPIKSIALHPDFSRQQSKQFV-SGGM---AGLVLSERNWLGNK--DSVVLSEGEGPIHSIKWR--  169 (846)
T ss_pred             -----cceeEecC--CcceeEEeccchhhhhhhhee-ecCc---ceEEEehhhhhcCc--cceeeecCccceEEEEec--
Confidence                 22323222  34566788887     23333 2222   225554421 0111  023456667778888887  


Q ss_pred             CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497          495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      |++|+++++.+         +.+||+..++.-...+.....  ..+-....++.|.++.+ |+..-
T Consensus       170 g~lIAWand~G---------v~vyd~~~~~~l~~i~~p~~~--~R~e~fpphl~W~~~~~-LVIGW  223 (846)
T KOG2066|consen  170 GNLIAWANDDG---------VKVYDTPTRQRLTNIPPPSQS--VRPELFPPHLHWQDEDR-LVIGW  223 (846)
T ss_pred             CcEEEEecCCC---------cEEEeccccceeeccCCCCCC--CCcccCCCceEecCCCe-EEEec
Confidence            89999999877         788998665432222211111  01111335778887654 55443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=88.07  E-value=9.9  Score=38.96  Aligned_cols=67  Identities=15%  Similarity=-0.067  Sum_probs=34.1

Q ss_pred             CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC----------------CCCcccceeEecCCCEEE
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD----------------GPWIDTMPSWSPKGDLIA  499 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~----------------~~~~~~~~~~spdG~~l~  499 (642)
                      ..+..+.+|.|.|+|++..--.|  +|..+|+..-..++..-++.-                ..+....++.|-||++||
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~G--dvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY  389 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHG--DVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY  389 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTT--EEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCC--cEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence            35678899999999999987554  888999876544211111110                011224568899999999


Q ss_pred             EEecC
Q 039497          500 FSSNR  504 (642)
Q Consensus       500 ~~~~~  504 (642)
                      ++++-
T Consensus       390 vTnSL  394 (461)
T PF05694_consen  390 VTNSL  394 (461)
T ss_dssp             EE---
T ss_pred             EEeec
Confidence            98763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=88.07  E-value=4  Score=42.41  Aligned_cols=70  Identities=7%  Similarity=0.073  Sum_probs=44.0

Q ss_pred             eEeeCCeEEEEEecCCCceEEEEEe---cCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          197 TWSGDSTIYFHRQADDGWWSIFRVS---FPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       197 ~wspdg~~~~~~~~~~g~~~l~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      .+.|-.-.+++. .++|..++|.+.   ....    .+.+....+-.+...+...+++++|+.++....++     .|+.
T Consensus       301 ~~~~sep~lit~-sed~~lk~WnLqk~~~s~~----~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg-----~I~~  370 (577)
T KOG0642|consen  301 AFHPSEPVLITA-SEDGTLKLWNLQKAKKSAE----KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG-----TIRC  370 (577)
T ss_pred             hcCCCCCeEEEe-ccccchhhhhhcccCCccc----cceeeeEEEecccCceEEEEecCCceEEEeeccCc-----eeee
Confidence            444444566666 578888888772   1121    12223334455666777788899999888855544     8899


Q ss_pred             EEe
Q 039497          274 YDL  276 (642)
Q Consensus       274 ~d~  276 (642)
                      |.+
T Consensus       371 w~~  373 (577)
T KOG0642|consen  371 WNL  373 (577)
T ss_pred             ecc
Confidence            966

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=87.93  E-value=57  Score=37.95  Aligned_cols=80  Identities=8%  Similarity=0.025  Sum_probs=48.7

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCc---EECCCCC
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFP---SCSPDGK  448 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~SpDg~  448 (642)
                      .+.+.+++.+|-+.+++..+.       .+.+.+|++.+  .      -     .......+......++   -+.|...
T Consensus      1195 hG~vTSi~idp~~~WlviGts-------~G~l~lWDLRF--~------~-----~i~sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTS-------RGQLVLWDLRF--R------V-----PILSWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred             ccceeEEEecCCceEEEEecC-------CceEEEEEeec--C------c-----eeecccCcccCCcceEEeeccCCCCc
Confidence            567889999999998888764       67899999988  2      1     1111111110122222   2344455


Q ss_pred             eEEEEeCCCCceeEEEEECCCCcc
Q 039497          449 FLVFRSGRSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       449 ~l~~~~~~~g~~~l~~~d~~~g~~  472 (642)
                      .+++++.. +...|-.|+..+|..
T Consensus      1255 ~~vs~~~~-~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1255 VSVSAGSS-SNNEVSTWNMETGLR 1277 (1431)
T ss_pred             eEEEeccc-CCCceeeeecccCcc
Confidence            66665542 455788888887753

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.52  E-value=36  Score=34.72  Aligned_cols=144  Identities=14%  Similarity=0.196  Sum_probs=75.3

Q ss_pred             ceeEEEEECCCCCeeEEeecCCceee----eeecCCCE--EEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497          353 NAGIKIAKSDGSKRWTLIKDRTAFYN----SWSPTEKH--VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD  426 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~~~~~~~~----~~spdg~~--l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  426 (642)
                      ...|+++|+++.+...+.. +....+    -|.-+|+.  |+.++.+.   .+...+.+|.++.  +     .+     .
T Consensus        77 ~~GL~VYdL~Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~---~g~n~l~~f~id~--~-----~g-----~  140 (381)
T PF02333_consen   77 KGGLYVYDLDGKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRS---DGRNSLRLFRIDP--D-----TG-----E  140 (381)
T ss_dssp             TTEEEEEETTS-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-C---CCT-EEEEEEEET--T-----TT-----E
T ss_pred             CCCEEEEcCCCcEEEeecC-CCcceeeeecceecCCceEEEEEEecCc---CCCCeEEEEEecC--C-----CC-----c
Confidence            4689999999988766643 222211    12235665  45555430   1236789999975  2     22     3


Q ss_pred             eEEccccC------CCCccCcEE--CC-CCCeEEEEeCCCCceeEEEEEC-CCCccc-cceeeCCCCCCcccceeEecCC
Q 039497          427 VKILTKEE------TGNNAFPSC--SP-DGKFLVFRSGRSGHKNLFVLDA-VNGEFN-GDIRQLTDGPWIDTMPSWSPKG  495 (642)
Q Consensus       427 ~~~l~~~~------~~~~~~~~~--Sp-Dg~~l~~~~~~~g~~~l~~~d~-~~g~~~-~~~~~l~~~~~~~~~~~~spdG  495 (642)
                      .+.+....      ....+.+.+  +| +|+..+|...++|..+-|.+.. ..|... ..++.+.-.+ ....++....-
T Consensus       141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EGCVVDDe~  219 (381)
T PF02333_consen  141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEGCVVDDET  219 (381)
T ss_dssp             EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEEEEEETTT
T ss_pred             ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceEEEEeccc
Confidence            44443211      011223332  43 6888888888888666565543 334310 1244444332 45667888777


Q ss_pred             CEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          496 DLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      .+||+...+.        .||.|+.+
T Consensus       220 g~LYvgEE~~--------GIW~y~Ae  237 (381)
T PF02333_consen  220 GRLYVGEEDV--------GIWRYDAE  237 (381)
T ss_dssp             TEEEEEETTT--------EEEEEESS
T ss_pred             CCEEEecCcc--------EEEEEecC
Confidence            7787776554        39999886

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.29  E-value=32  Score=33.97  Aligned_cols=120  Identities=20%  Similarity=0.232  Sum_probs=55.1

Q ss_pred             eEEEEECCCCccccceeeC-CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEE-EeCCCCceEEeeecCCCCCCC
Q 039497          461 NLFVLDAVNGEFNGDIRQL-TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV-IKPDGSGLRRIHVAGPEGSGD  538 (642)
Q Consensus       461 ~l~~~d~~~g~~~~~~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~-~d~~~~~~~~l~~~~~~~~~~  538 (642)
                      .||+-. +.|+.   -+.+ ....+......-++||++|++.....         +|+ ++......++... ....   
T Consensus       125 ~iy~T~-DgG~t---W~~~~~~~~gs~~~~~r~~dG~~vavs~~G~---------~~~s~~~G~~~w~~~~r-~~~~---  187 (302)
T PF14870_consen  125 AIYRTT-DGGKT---WQAVVSETSGSINDITRSSDGRYVAVSSRGN---------FYSSWDPGQTTWQPHNR-NSSR---  187 (302)
T ss_dssp             -EEEES-STTSS---EEEEE-S----EEEEEE-TTS-EEEEETTSS---------EEEEE-TT-SS-EEEE---SSS---
T ss_pred             cEEEeC-CCCCC---eeEcccCCcceeEeEEECCCCcEEEEECccc---------EEEEecCCCccceEEcc-Cccc---
Confidence            566543 44543   2333 33334556677899999887775543         554 4443223444333 2222   


Q ss_pred             cccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc-C-CCce----eeccCCCCCCCCcEEecCCc
Q 039497          539 VDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL-D-GSGL----RRLTWNGYENGTPAWHPGNQ  612 (642)
Q Consensus       539 ~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~----~~lt~~~~~~~~~~~s~dg~  612 (642)
                          ++..+.|+||+... +.+ +++                .|+.-+. + ....    ..+....+.+.+++|.++++
T Consensus       188 ----riq~~gf~~~~~lw-~~~-~Gg----------------~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~  245 (302)
T PF14870_consen  188 ----RIQSMGFSPDGNLW-MLA-RGG----------------QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE  245 (302)
T ss_dssp             -----EEEEEE-TTS-EE-EEE-TTT----------------EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred             ----eehhceecCCCCEE-EEe-CCc----------------EEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence                67889999997644 444 333                5665551 1 1111    11222334457889999988


Q ss_pred             eEEeecC
Q 039497          613 LDLGKLR  619 (642)
Q Consensus       613 ~~~~~~~  619 (642)
                      .++...+
T Consensus       246 ~wa~gg~  252 (302)
T PF14870_consen  246 IWAVGGS  252 (302)
T ss_dssp             EEEEEST
T ss_pred             EEEEeCC
Confidence            8876533

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=87.21  E-value=9.5  Score=40.99  Aligned_cols=131  Identities=18%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             ceeEecCCCEEEEEecCCCC------------CCCCceeEEEEeCCCC-------ceEEeeecCCC--------CCC-Cc
Q 039497          488 MPSWSPKGDLIAFSSNRHNP------------DNVEAFSLYVIKPDGS-------GLRRIHVAGPE--------GSG-DV  539 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~------------~~~~~~~l~~~d~~~~-------~~~~l~~~~~~--------~~~-~~  539 (642)
                      .+.++|....||++......            .....-+||+++..+.       ....+...+..        ..+ ..
T Consensus       354 gi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~  433 (524)
T PF05787_consen  354 GITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDN  433 (524)
T ss_pred             CeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCC
Confidence            45677776677777654431            0223457888887765       33332222210        000 11


Q ss_pred             ccccccceEEcCCCCEEEEEEecCCcccC-CCCCC--CC--CCCC--CcEEEEEcCCCceeeccCC--CCCCCCcEEecC
Q 039497          540 DRERINHVCFSADGEWLLFTANLGAVMAE-PVSWP--NQ--FQPY--GDLYVVKLDGSGLRRLTWN--GYENGTPAWHPG  610 (642)
Q Consensus       540 ~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~-~~~~~--~~--~~~~--~~l~~~~~~~~~~~~lt~~--~~~~~~~~~s~d  610 (642)
                      ....+..+.|+++|+.+ +..+.+..... +...+  ..  +...  ..++..+...++++++...  +..+..+.|+||
T Consensus       434 ~f~sPDNL~~d~~G~Lw-I~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspD  512 (524)
T PF05787_consen  434 GFASPDNLAFDPDGNLW-IQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPD  512 (524)
T ss_pred             CcCCCCceEECCCCCEE-EEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECCC
Confidence            12245678999999844 33332221100 00000  00  0000  0144455666777776653  456789999999


Q ss_pred             CceEEeecC
Q 039497          611 NQLDLGKLR  619 (642)
Q Consensus       611 g~~~~~~~~  619 (642)
                      ++.++-+.+
T Consensus       513 g~tlFvniQ  521 (524)
T PF05787_consen  513 GRTLFVNIQ  521 (524)
T ss_pred             CCEEEEEEe
Confidence            988754433

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=87.20  E-value=24  Score=36.27  Aligned_cols=107  Identities=15%  Similarity=0.103  Sum_probs=63.7

Q ss_pred             EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-----CcceEeeCC--eEE
Q 039497          133 TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-----GWPTWSGDS--TIY  205 (642)
Q Consensus       133 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-----~~~~wspdg--~~~  205 (642)
                      ..|..+.+......|...|..|+..+++.            .+++|+-..+..+.-. ..+     ....|.|..  +-+
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~------------~vv~WdW~~~~~~l~f-~SGH~~NvfQaKFiP~s~d~ti  202 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDL------------QVVVWDWVSGSPKLSF-ESGHCNNVFQAKFIPFSGDRTI  202 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccc------------eEEeehhhccCccccc-ccccccchhhhhccCCCCCcCc
Confidence            45566677777788999999999888776            6888887665443322 222     123455443  233


Q ss_pred             EEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEE
Q 039497          206 FHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAV  259 (642)
Q Consensus       206 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~  259 (642)
                      ++. +.+|...+-.+...+...      ...++..+...+...+.-|+..+-++
T Consensus       203 ~~~-s~dgqvr~s~i~~t~~~e------~t~rl~~h~g~vhklav~p~sp~~f~  249 (559)
T KOG1334|consen  203 VTS-SRDGQVRVSEILETGYVE------NTKRLAPHEGPVHKLAVEPDSPKPFL  249 (559)
T ss_pred             eec-cccCceeeeeecccccee------cceecccccCccceeeecCCCCCccc
Confidence            333 457766666665555421      34556666556666676666554443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.88  E-value=28  Score=32.88  Aligned_cols=134  Identities=16%  Similarity=0.177  Sum_probs=80.8

Q ss_pred             CcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC-cccceeEecCCCEEEEEecCCCCCCCCceeEEEE
Q 039497          440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI  518 (642)
Q Consensus       440 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~-~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~  518 (642)
                      .+..-+|.+.++|.....+  .+.-+|.++|+.    ..-+.... ....+-.  =|++++..-..+.        ||..
T Consensus        15 pLVV~~dskT~v~igSHs~--~~~avd~~sG~~----~We~ilg~RiE~sa~v--vgdfVV~GCy~g~--------lYfl   78 (354)
T KOG4649|consen   15 PLVVCNDSKTLVVIGSHSG--IVIAVDPQSGNL----IWEAILGVRIECSAIV--VGDFVVLGCYSGG--------LYFL   78 (354)
T ss_pred             cEEEecCCceEEEEecCCc--eEEEecCCCCcE----EeehhhCceeeeeeEE--ECCEEEEEEccCc--------EEEE
Confidence            3566778888888876544  566789999884    43222211 2222222  3677777776654        9999


Q ss_pred             eCCCCc-eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeecc
Q 039497          519 KPDGSG-LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLT  596 (642)
Q Consensus       519 d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt  596 (642)
                      +.++|. ....+..+...         ..+...+|+..|+..+.++                 ..|.+|..+.. +-..-
T Consensus        79 ~~~tGs~~w~f~~~~~vk---------~~a~~d~~~glIycgshd~-----------------~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   79 CVKTGSQIWNFVILETVK---------VRAQCDFDGGLIYCGSHDG-----------------NFYALDPKTYGCVYKSK  132 (354)
T ss_pred             Eecchhheeeeeehhhhc---------cceEEcCCCceEEEecCCC-----------------cEEEecccccceEEecc
Confidence            999884 33333333222         4567789999888888765                 78888776544 22222


Q ss_pred             CCCCCCCCcEEec-CCceEE
Q 039497          597 WNGYENGTPAWHP-GNQLDL  615 (642)
Q Consensus       597 ~~~~~~~~~~~s~-dg~~~~  615 (642)
                      -.++-..+|...+ ++.+++
T Consensus       133 cgG~~f~sP~i~~g~~sly~  152 (354)
T KOG4649|consen  133 CGGGTFVSPVIAPGDGSLYA  152 (354)
T ss_pred             cCCceeccceecCCCceEEE
Confidence            2233334666666 554444

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=86.68  E-value=23  Score=37.49  Aligned_cols=70  Identities=16%  Similarity=0.210  Sum_probs=37.0

Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEE---eCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI---KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~---d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      .+.|.|.|+..+...............++-+   +.+.++.++.......       +.+.-+.||||++.|++.-.-.+
T Consensus       504 nl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g-------~E~tG~~FspD~~TlFV~vQHPG  576 (616)
T COG3211         504 NLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIG-------CEFTGPCFSPDGKTLFVNVQHPG  576 (616)
T ss_pred             ceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCc-------ceeecceeCCCCceEEEEecCCC
Confidence            4578888885554433321111112223322   3333444444332221       25678999999999987765443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.44  E-value=16  Score=38.27  Aligned_cols=114  Identities=11%  Similarity=0.112  Sum_probs=60.3

Q ss_pred             cccceeEecCCCEEEEEec-CCCCCCCCceeEEEEeCCCCceEEeeecC------CCCCCCcccccccceEEcCCC----
Q 039497          485 IDTMPSWSPKGDLIAFSSN-RHNPDNVEAFSLYVIKPDGSGLRRIHVAG------PEGSGDVDRERINHVCFSADG----  553 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~S~Dg----  553 (642)
                      ....++|.|||+. +++.. .+.        |++++..++..+.+....      -++       ....++|+||-    
T Consensus        31 ~Pw~maflPDG~l-lVtER~~G~--------I~~v~~~~~~~~~~~~l~~v~~~~ge~-------GLlglal~PdF~~~~   94 (454)
T TIGR03606        31 KPWALLWGPDNQL-WVTERATGK--------ILRVNPETGEVKVVFTLPEIVNDAQHN-------GLLGLALHPDFMQEK   94 (454)
T ss_pred             CceEEEEcCCCeE-EEEEecCCE--------EEEEeCCCCceeeeecCCceeccCCCC-------ceeeEEECCCccccC
Confidence            4467899999974 44443 332        888887655443322110      011       34678888774    


Q ss_pred             --CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC--c---ee-eccCC---C-CCCCCcEEecCCceEEeecCCC
Q 039497          554 --EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS--G---LR-RLTWN---G-YENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       554 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~---~~-~lt~~---~-~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                        .+||+.........+   .+    ....|.++.++..  .   .+ .+...   . -.-..++|.|||.++++..+.+
T Consensus        95 ~n~~lYvsyt~~~~~~~---~~----~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g  167 (454)
T TIGR03606        95 GNPYVYISYTYKNGDKE---LP----NHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG  167 (454)
T ss_pred             CCcEEEEEEeccCCCCC---cc----CCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence              466666533210000   00    1237888776521  1   12 22211   1 1235788999999888766554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=86.23  E-value=2.6  Score=43.56  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=59.7

Q ss_pred             eeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC-CCE
Q 039497          477 RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD-GEW  555 (642)
Q Consensus       477 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D-g~~  555 (642)
                      ..|+.+.+-+..+.|+.||.+|+-.+++.        +|.+||.-..++.+....++..       ++..+.|-|- +..
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~--------r~ivWd~~~~KllhsI~TgHta-------NIFsvKFvP~tnnr  108 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDT--------RLIVWDPFEYKLLHSISTGHTA-------NIFSVKFVPYTNNR  108 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcc--------eEEeecchhcceeeeeeccccc-------ceeEEeeeccCCCe
Confidence            66778888889999999999888776654        4999999877777776667766       6777888773 445


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                      |+++....                ..|+++|++.
T Consensus       109 iv~sgAgD----------------k~i~lfdl~~  126 (758)
T KOG1310|consen  109 IVLSGAGD----------------KLIKLFDLDS  126 (758)
T ss_pred             EEEeccCc----------------ceEEEEeccc
Confidence            55444321                1788888874

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=86.10  E-value=21  Score=37.39  Aligned_cols=242  Identities=11%  Similarity=0.030  Sum_probs=117.8

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEE---E-CCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIA---K-SDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI  405 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~---d-~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l  405 (642)
                      ...+.|-.-.|+..+. ++.-.||.+   . -......++..    .+.+.++..+++++.++-...       ++.++.
T Consensus       299 ~l~~~~sep~lit~se-d~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~-------Dg~I~~  370 (577)
T KOG0642|consen  299 ALAFHPSEPVLITASE-DGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI-------DGTIRC  370 (577)
T ss_pred             hhhcCCCCCeEEEecc-ccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc-------Cceeee
Confidence            3344554443444333 444444544   1 11223344433    566778899999998877653       789999


Q ss_pred             EEEEeecCCC--CCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-
Q 039497          406 ARVSFQLDPS--DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-  482 (642)
Q Consensus       406 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-  482 (642)
                      |.+...-++-  +++.-     -...+..+. ..++.+++|+....|+-.+.   +..++.|+.....    ...+... 
T Consensus       371 w~~p~n~dp~ds~dp~v-----l~~~l~Ght-davw~l~~s~~~~~Llscs~---DgTvr~w~~~~~~----~~~f~~~~  437 (577)
T KOG0642|consen  371 WNLPPNQDPDDSYDPSV-----LSGTLLGHT-DAVWLLALSSTKDRLLSCSS---DGTVRLWEPTEES----PCTFGEPK  437 (577)
T ss_pred             eccCCCCCcccccCcch-----hccceeccc-cceeeeeecccccceeeecC---CceEEeeccCCcC----ccccCCcc
Confidence            9876511100  01111     122333444 56677888887777766653   3378888876433    2222221 


Q ss_pred             -CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497          483 -PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       483 -~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                       .+....+.+..-.-.+.+.+.+.     ....+  +++......++....... +...-.....+++.|.+. +.|++.
T Consensus       438 e~g~Plsvd~~ss~~a~~~~s~~~-----~~~~~--~~~ev~s~~~~~~s~~~~-~~~~~~~in~vVs~~~~~-~~~~~h  508 (577)
T KOG0642|consen  438 EHGYPLSVDRTSSRPAHSLASFRF-----GYTSI--DDMEVVSDLLIFESSASP-GPRRYPQINKVVSHPTAD-ITFTAH  508 (577)
T ss_pred             ccCCcceEeeccchhHhhhhhccc-----ccccc--hhhhhhhheeeccccCCC-cccccCccceEEecCCCC-eeEecc
Confidence             12222223221111122222221     11112  222233333333221111 111111334566667664 556655


Q ss_pred             cCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      +..                .|-.+|...+. +.-...+.-.+.++++.|+|-+|++....+
T Consensus       509 ed~----------------~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~  553 (577)
T KOG0642|consen  509 EDR----------------SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG  553 (577)
T ss_pred             cCC----------------ceecccccccccchheeeccceecceeecCCCceEEeecCCc
Confidence            432                56565655444 333334455567899999999998865544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.69  E-value=6.5  Score=42.39  Aligned_cols=163  Identities=13%  Similarity=0.108  Sum_probs=88.8

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCe--eEEee--cCCceeeeeecCCCEEE-EEEcCCCcccCCCeEEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR--WTLIK--DRTAFYNSWSPTEKHVI-YTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~--~~l~~--~~~~~~~~~spdg~~l~-~~~~~~~~~~~~~~~~l~~  407 (642)
                      ....++|-|+-|+.++    ...++++|++..-.  +.+-.  ...+.+..|||...+=+ +++.      ......+|.
T Consensus        28 ~a~si~p~grdi~lAs----r~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst------s~qkaiiwn   97 (1081)
T KOG0309|consen   28 NAVSINPSGRDIVLAS----RQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST------SNQKAIIWN   97 (1081)
T ss_pred             cceeeccccchhhhhh----hcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec------Ccchhhhhh
Confidence            3557899999999855    47899998876543  33332  44566788988754432 3332      244555666


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWID  486 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~  486 (642)
                      +..  .     +..    .+..+..+....+..+.|.|...-+..+-.  -...+..||+.+-..   ....+.. ....
T Consensus        98 lA~--s-----s~~----aIef~lhghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rSp~~---p~ys~~~w~s~a  161 (1081)
T KOG0309|consen   98 LAK--S-----SSN----AIEFVLHGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRSPHR---PFYSTSSWRSAA  161 (1081)
T ss_pred             hhc--C-----Ccc----ceEEEEecCccceeccccCCCCCcceeecc--ccccceeeeccCCCc---ceeeeecccccC
Confidence            654  1     111    233332222255667788877665554433  234677788775542   1222211 1123


Q ss_pred             cceeEec-CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          487 TMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       487 ~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      ..+.|+- |+..++-...+.         |++||+.-|.....+.
T Consensus       162 sqVkwnyk~p~vlasshg~~---------i~vwd~r~gs~pl~s~  197 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLASSHGND---------IFVWDLRKGSTPLCSL  197 (1081)
T ss_pred             ceeeecccCcchhhhccCCc---------eEEEeccCCCcceEEe
Confidence            4567764 444443333222         8999987665544443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.63  E-value=11  Score=39.26  Aligned_cols=151  Identities=13%  Similarity=0.139  Sum_probs=80.4

Q ss_pred             EEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCc
Q 039497          344 IVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE  422 (642)
Q Consensus       344 l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  422 (642)
                      |++... .....|+.+|++.|++..-.. ...+.-+.+.||.+.-=...........+.  .+++++.+..     +...
T Consensus       347 lil~~~-~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n--~vfriDpRv~-----~~~k  418 (644)
T KOG2395|consen  347 LILMDG-GEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDN--SVFRIDPRVQ-----GKNK  418 (644)
T ss_pred             eEeeCC-CCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCC--ceEEeccccc-----Ccce
Confidence            444433 345789999999998776665 444666777777664322222111111123  3444443212     1100


Q ss_pred             cc-cceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee-eCCCCCCcccceeEecCCCEEEE
Q 039497          423 IP-CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR-QLTDGPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       423 ~~-~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~  500 (642)
                      +. ...++....  .....++-.-+| +|+..+.+ |  .|.+||-- |..   .+ .|......+.++..+.||++|+.
T Consensus       419 l~~~q~kqy~~k--~nFsc~aTT~sG-~IvvgS~~-G--dIRLYdri-~~~---AKTAlPgLG~~I~hVdvtadGKwil~  488 (644)
T KOG2395|consen  419 LAVVQSKQYSTK--NNFSCFATTESG-YIVVGSLK-G--DIRLYDRI-GRR---AKTALPGLGDAIKHVDVTADGKWILA  488 (644)
T ss_pred             eeeeeccccccc--cccceeeecCCc-eEEEeecC-C--cEEeehhh-hhh---hhhcccccCCceeeEEeeccCcEEEE
Confidence            00 001111111  122334555566 67777643 3  57777753 443   23 34555556788899999999988


Q ss_pred             EecCCCCCCCCceeEEEEeCC
Q 039497          501 SSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      +...-         |.++++.
T Consensus       489 Tc~ty---------LlLi~t~  500 (644)
T KOG2395|consen  489 TCKTY---------LLLIDTL  500 (644)
T ss_pred             ecccE---------EEEEEEe
Confidence            87643         6666653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=84.49  E-value=61  Score=34.63  Aligned_cols=158  Identities=9%  Similarity=0.128  Sum_probs=86.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEEC--CCCCeeEEeecCCceeeeeecCCC----EEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKS--DGSKRWTLIKDRTAFYNSWSPTEK----HVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~--~~~~~~~l~~~~~~~~~~~spdg~----~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .++|. ||++++..       .|++.+-  +-|....+-.-..+..+.|+|-+.    .|+.+..       ...+.+|.
T Consensus        24 GlaWT-DGkqVvLT-------~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQH-------kkhVtVWq   88 (671)
T PF15390_consen   24 GLAWT-DGKQVVLT-------DLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQH-------KKHVTVWQ   88 (671)
T ss_pred             ceEec-CCCEEEEE-------eeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEec-------cceEEEEE
Confidence            34564 77777773       2333321  223333343346678889988532    3333332       67888999


Q ss_pred             EEeecCCCCCCCCCc-cccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcc
Q 039497          408 VSFQLDPSDDNNREE-IPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID  486 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~  486 (642)
                      +..  .+.   ...+ +......+...-........|+|...-|++...++- .-++-+..+...    ++.-.+..+.+
T Consensus        89 L~~--s~~---e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~sr----VkaDi~~~G~I  158 (671)
T PF15390_consen   89 LCP--STT---ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSR----VKADIKTSGLI  158 (671)
T ss_pred             ecc--Ccc---ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCce----EEEeccCCceE
Confidence            875  210   0100 000111221111123445689999888877775532 233333334333    23333555677


Q ss_pred             cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497          487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS  523 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~  523 (642)
                      ....|.+||++|+++-...       -+-|+||-..+
T Consensus       159 hCACWT~DG~RLVVAvGSs-------LHSyiWd~~qK  188 (671)
T PF15390_consen  159 HCACWTKDGQRLVVAVGSS-------LHSYIWDSAQK  188 (671)
T ss_pred             EEEEecCcCCEEEEEeCCe-------EEEEEecCchh
Confidence            7889999999999987653       56788886544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=83.65  E-value=45  Score=35.54  Aligned_cols=61  Identities=21%  Similarity=0.357  Sum_probs=38.7

Q ss_pred             cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      ....|+|....|++...++.      .-++-+..++...+.-.  ...+       .+....|..||++|++.-..
T Consensus       116 QGCVWHPk~~iL~VLT~~dv------SV~~sV~~d~srVkaDi--~~~G-------~IhCACWT~DG~RLVVAvGS  176 (671)
T PF15390_consen  116 QGCVWHPKKAILTVLTARDV------SVLPSVHCDSSRVKADI--KTSG-------LIHCACWTKDGQRLVVAVGS  176 (671)
T ss_pred             CcccccCCCceEEEEecCce------eEeeeeeeCCceEEEec--cCCc-------eEEEEEecCcCCEEEEEeCC
Confidence            45699999998888877652      22333333333333222  3344       56778999999999887643

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.34  E-value=42  Score=31.89  Aligned_cols=149  Identities=11%  Similarity=0.073  Sum_probs=75.3

Q ss_pred             ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      ...=.++|+.+++.+.+..  +-....-.+.|||+.|......    .+...++++.-.. .+     ..+........+
T Consensus        45 ~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~----~G~~~ir~~~p~~-~~-----~~~~w~e~~~~m  114 (243)
T PF07250_consen   45 PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDN----DGNKAIRIFTPCT-SD-----GTCDWTESPNDM  114 (243)
T ss_pred             eEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCC----ccccceEEEecCC-CC-----CCCCceECcccc
Confidence            3445667888888887765  3445555788999988766542    2233444444211 01     111100011123


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC-CccccceeeCCC---CC--CcccceeEecCCCEEEEEecC
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN-GEFNGDIRQLTD---GP--WIDTMPSWSPKGDLIAFSSNR  504 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~~~~~l~~---~~--~~~~~~~~spdG~~l~~~~~~  504 (642)
                      ...  ........-|||+.|+.........+  .++... +........+..   ..  .........|||+.++|....
T Consensus       115 ~~~--RWYpT~~~L~DG~vlIvGG~~~~t~E--~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~  190 (243)
T PF07250_consen  115 QSG--RWYPTATTLPDGRVLIVGGSNNPTYE--FWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG  190 (243)
T ss_pred             cCC--CccccceECCCCCEEEEeCcCCCccc--ccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence            333  34455677889998887765432222  223211 110000111111   11  111233668999988877765


Q ss_pred             CCCCCCCceeEEEEeCCCCce
Q 039497          505 HNPDNVEAFSLYVIKPDGSGL  525 (642)
Q Consensus       505 ~~~~~~~~~~l~~~d~~~~~~  525 (642)
                      .          .++|..+.+.
T Consensus       191 s----------~i~d~~~n~v  201 (243)
T PF07250_consen  191 S----------IIYDYKTNTV  201 (243)
T ss_pred             c----------EEEeCCCCeE
Confidence            3          6668877654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.27  E-value=26  Score=36.68  Aligned_cols=141  Identities=14%  Similarity=0.153  Sum_probs=71.2

Q ss_pred             CeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce--
Q 039497          448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL--  525 (642)
Q Consensus       448 ~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~--  525 (642)
                      +-|++.+.. ....||.+|+..|+.   +..-.-. ..+....+.||.+.-=..+. .+--.-..+.|++||+.-...  
T Consensus       345 snlil~~~~-~~~~l~klDIE~GKI---VeEWk~~-~di~mv~~t~d~K~~Ql~~e-~TlvGLs~n~vfriDpRv~~~~k  418 (644)
T KOG2395|consen  345 SNLILMDGG-EQDKLYKLDIERGKI---VEEWKFE-DDINMVDITPDFKFAQLTSE-QTLVGLSDNSVFRIDPRVQGKNK  418 (644)
T ss_pred             cceEeeCCC-CcCcceeeeccccee---eeEeecc-CCcceeeccCCcchhccccc-ccEEeecCCceEEecccccCcce
Confidence            345555432 235799999999986   3322211 12334455555432111100 000001223499999853211  


Q ss_pred             EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCC
Q 039497          526 RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGT  604 (642)
Q Consensus       526 ~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~  604 (642)
                      -.+........++    .+...+=..+| +|++.+..+                 +|-+|+.-+.. .+.|..-+..+..
T Consensus       419 l~~~q~kqy~~k~----nFsc~aTT~sG-~IvvgS~~G-----------------dIRLYdri~~~AKTAlPgLG~~I~h  476 (644)
T KOG2395|consen  419 LAVVQSKQYSTKN----NFSCFATTESG-YIVVGSLKG-----------------DIRLYDRIGRRAKTALPGLGDAIKH  476 (644)
T ss_pred             eeeeecccccccc----ccceeeecCCc-eEEEeecCC-----------------cEEeehhhhhhhhhcccccCCceee
Confidence            1111111000000    23444445566 577777665                 67777764433 4556655666788


Q ss_pred             cEEecCCceEEe
Q 039497          605 PAWHPGNQLDLG  616 (642)
Q Consensus       605 ~~~s~dg~~~~~  616 (642)
                      +..+.||+|+++
T Consensus       477 VdvtadGKwil~  488 (644)
T KOG2395|consen  477 VDVTADGKWILA  488 (644)
T ss_pred             EEeeccCcEEEE
Confidence            999999999853

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=81.28  E-value=37  Score=33.56  Aligned_cols=161  Identities=16%  Similarity=0.238  Sum_probs=66.9

Q ss_pred             eeEEEEECCCCCeeEE-ee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          354 AGIKIAKSDGSKRWTL-IK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l-~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      ..||. ..++++..+. ..  .+.+..+.-++||++|++...+..|.         ..+.        +..    ...+.
T Consensus       124 G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~---------s~~~--------G~~----~w~~~  181 (302)
T PF14870_consen  124 GAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYS---------SWDP--------GQT----TWQPH  181 (302)
T ss_dssp             --EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEE---------EE-T--------T-S----S-EEE
T ss_pred             CcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEE---------EecC--------CCc----cceEE
Confidence            45655 3355544333 22  45567778899999888876432221         1111        111    22333


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEE-CCCCcc-ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD-AVNGEF-NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d-~~~g~~-~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~  508 (642)
                      ......++..+.|+||+...+.+  +.|  +|+.-+ ...++. ......+......+..++|.+++.. +.....+.  
T Consensus       182 ~r~~~~riq~~gf~~~~~lw~~~--~Gg--~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~-wa~gg~G~--  254 (302)
T PF14870_consen  182 NRNSSRRIQSMGFSPDGNLWMLA--RGG--QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI-WAVGGSGT--  254 (302)
T ss_dssp             E--SSS-EEEEEE-TTS-EEEEE--TTT--EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E-EEEESTT---
T ss_pred             ccCccceehhceecCCCCEEEEe--CCc--EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE-EEEeCCcc--
Confidence            22222577889999997654433  333  676666 222221 0001112223334567799988664 44444442  


Q ss_pred             CCCceeEEEEeCCCCc-eEEeeec-CCCCCCCcccccccceEEcCCCCEEE
Q 039497          509 NVEAFSLYVIKPDGSG-LRRIHVA-GPEGSGDVDRERINHVCFSADGEWLL  557 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~~-~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~  557 (642)
                            |+ +..++|+ .++.... ....       .+..+.|..+.+-++
T Consensus       255 ------l~-~S~DgGktW~~~~~~~~~~~-------n~~~i~f~~~~~gf~  291 (302)
T PF14870_consen  255 ------LL-VSTDGGKTWQKDRVGENVPS-------NLYRIVFVNPDKGFV  291 (302)
T ss_dssp             ------EE-EESSTTSS-EE-GGGTTSSS----------EEEEEETTEEEE
T ss_pred             ------EE-EeCCCCccceECccccCCCC-------ceEEEEEcCCCceEE
Confidence                  44 4455554 4443321 2222       456777765544343

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.18  E-value=31  Score=34.71  Aligned_cols=76  Identities=13%  Similarity=0.072  Sum_probs=52.6

Q ss_pred             cCCceeeeeecCCCEE-EEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeE
Q 039497          372 DRTAFYNSWSPTEKHV-IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL  450 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l  450 (642)
                      ...+.+++|||..+-| .+.+.       +..+.|.++..  .      -     ....... . ...++..|--|.+.+
T Consensus       193 g~~IrdlafSp~~~GLl~~asl-------~nkiki~dlet--~------~-----~vssy~a-~-~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  193 GSFIRDLAFSPFNEGLLGLASL-------GNKIKIMDLET--S------C-----VVSSYIA-Y-NQIWSCCWDLDERHV  250 (463)
T ss_pred             chhhhhhccCccccceeeeecc-------CceEEEEeccc--c------e-----eeeheec-c-CCceeeeeccCCcce
Confidence            4457889999998854 44443       67888888876  2      1     2222222 2 467788999999999


Q ss_pred             EEEeCCCCceeEEEEECCCCc
Q 039497          451 VFRSGRSGHKNLFVLDAVNGE  471 (642)
Q Consensus       451 ~~~~~~~g~~~l~~~d~~~g~  471 (642)
                      +|+...+|  .|+++|+..-+
T Consensus       251 IYaGl~nG--~VlvyD~R~~~  269 (463)
T KOG1645|consen  251 IYAGLQNG--MVLVYDMRQPE  269 (463)
T ss_pred             eEEeccCc--eEEEEEccCCC
Confidence            99987655  89999986433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	642
2w8b_B	409	Crystal Structure Of Processed Tolb In Complex With		4e-08
3iax_A	438	The Crystal Structure Of The Tolb Box Of Colicin A		4e-08
1c5k_A	439	The Structure Of Tolb, An Essential Component Of Th		4e-08
2hqs_A	415	Crystal Structure Of TolbPAL COMPLEX Length = 415		4e-08
2w8b_A	409	Crystal Structure Of Processed Tolb In Complex With		4e-08
1crz_A	403	Crystal Structure Of The E. Coli Tolb Protein Lengt		5e-07
2ojh_A	297	The Structure Of Putative Tolb From Agrobacterium T		4e-05

>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal Length = 409

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
           +N  P+ SPDG  L F   ++G  NL+V+D  +G+    IRQ+TDG   +T P+W P   
Sbjct: 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 279
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
            +AF+S++     V     Y +  +G   +RI     EGS + D +       S+DG+++
Sbjct: 280 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 325
Query: 557 LFTANLGA 564
           +  ++ G 
Sbjct: 326 VMVSSNGG 333

>pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In Complex With Tolb Reveals Important Differences In The Recruitment Of The Common Tolb Translocation Portal Used By Group A Colicins Length = 438

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
           +N  P+ SPDG  L F   ++G  NL+V+D  +G+    IRQ+TDG   +T P+W P   
Sbjct: 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 300
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
            +AF+S++     V     Y +  +G   +RI     EGS + D +       S+DG+++
Sbjct: 301 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 346
Query: 557 LFTANLG 563
           +  ++ G
Sbjct: 347 VMVSSNG 353

>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol- Dependent Translocation System And Its Interactions With The Translocation Domain Of Colicin E9 Length = 439

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 18/127 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
           +N  P+ SPDG  L F   ++G  NL+V+D  +G+    IRQ+TDG   +T P+W P   
Sbjct: 246 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 301
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
            +AF+S++     V     Y +  +G   +RI     EGS + D +       S+DG+++
Sbjct: 302 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 347
Query: 557 LFTANLG 563
           +  ++ G
Sbjct: 348 VMVSSNG 354

>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX Length = 415

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
           +N  P+ SPDG  L F   ++G  NL+V+D  +G+    IRQ+TDG   +T P+W P   
Sbjct: 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 279
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
            +AF+S++     V     Y +  +G   +RI     EGS + D +       S+DG+++
Sbjct: 280 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 325
Query: 557 LFTANLGA 564
           +  ++ G 
Sbjct: 326 VMVSSNGG 333

>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal Length = 409

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
           +N  P+ SPDG  L F   ++G  NL+V+D  +G+    IRQ+TDG   +T P+W P   
Sbjct: 224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 279
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWL 556
            +AF+S++     V     Y +  +G   +RI     EGS + D +       S+DG+++
Sbjct: 280 NLAFTSDQAGRPQV-----YKVNINGGAPQRITW---EGSQNQDAD------VSSDGKFM 325
Query: 557 LFTANLGA 564
           +  ++ G 
Sbjct: 326 VMVSSNGG 333

>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein Length = 403

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD 496
           +N  P+ SPDG  L F   ++G  NL+V D  +G+    IRQ+TDG   +T P+W P   
Sbjct: 218 HNGAPAFSPDGSKLAFALSKTGSLNLYVXDLASGQ----IRQVTDGRSNNTEPTWFPDSQ 273
Query: 497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS-GDVDRERINHVCFSADG 553
            +AF+S++     V     Y +  +G   +RI   G +    DV  +    V  S++G
Sbjct: 274 NLAFTSDQAGRPQV-----YKVNINGGAPQRITWEGSQNQDADVSSDGKFXVXVSSNG 326

>pdb|2OJH|A Chain A, The Structure Of Putative Tolb From Agrobacterium Tumefaciens Length = 297

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 24/167 (14%)
Query: 337 FSPDGGLIVFNHDFEL-NAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI 395
            SPDG L   +   E   + I +  S G       K+  ++++ WSP  K   Y      
Sbjct: 92  ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLXTKNLPSYWHGWSPDGKSFTYCGI--- 148
Query: 396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG 455
                            D   D    +I   V+       G N  P  SPDG+++ F S 
Sbjct: 149 ----------------RDQVFDIYSXDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS 192
Query: 456 RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
           R+G   ++ +  V+G     + ++TD  + D  P  SP GD + F S
Sbjct: 193 RTGQXQIWRV-RVDGS---SVERITDSAYGDWFPHPSPSGDKVVFVS 235

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	642
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	2e-36
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	1e-32
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	1e-30
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	2e-12
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	6e-12
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	2e-07
1k32_A	1045	Tricorn protease; protein degradation, substrate g	1e-25
1k32_A	1045	Tricorn protease; protein degradation, substrate g	1e-16
1k32_A	1045	Tricorn protease; protein degradation, substrate g	7e-14
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	2e-22
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	6e-21
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	5e-13
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	1e-08
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	3e-07
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	8e-06
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	6e-13
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	5e-12
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	3e-10
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	3e-08
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	5e-05
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	7e-13
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	1e-12
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	1e-09
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	4e-08
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	6e-07
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	4e-06
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	8e-13
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	7e-09
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	2e-12
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	4e-12
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	8e-12
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	3e-06
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	3e-09
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	1e-04
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	4e-07
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	2e-05
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	2e-04
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	3e-05
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	2e-04
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	2e-04
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	3e-04

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297

 Score =  137 bits (347), Expect = 2e-36
 Identities = 52/284 (18%), Positives = 97/284 (34%), Gaps = 49/284 (17%)

Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGP 394
           P++SPDG  ++ N +  L            K  T         +  SP       +    
Sbjct: 47  PNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDK-- 104

Query: 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS 454
             +  ++ + +        PS       +          +   + +   SPDGK   +  
Sbjct: 105 -VEFGKSAIYLL-------PSTGGTPRLM---------TKNLPSYWHGWSPDGKSFTYCG 147

Query: 455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS 514
            R    +++ +D  +G       +LT G   +  P +SP G  I F+S+R          
Sbjct: 148 IRDQVFDIYSMDIDSG----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG-----QMQ 198

Query: 515 LYVIKPDGSGLRRI-HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
           ++ ++ DGS + RI   A  +               S  G+ ++F +    V   P    
Sbjct: 199 IWRVRVDGSSVERITDSAYGDWFPH----------PSPSGDKVVFVSYDADVFDHPRDLD 248

Query: 574 NQFQPYGDLYVVKLDGSGLRRLTWNGYENGT---PAWHP-GNQL 613
            +      + ++ +DG  +  L       GT   P W P G++ 
Sbjct: 249 VR------VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEF 286

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297

 Score =  126 bits (318), Expect = 1e-32
 Identities = 52/279 (18%), Positives = 90/279 (32%), Gaps = 59/279 (21%)

Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTG 393
              S     +       + + I+I      K   + +    F   +WSP  K+++  S G
Sbjct: 3   MRQSTLHTRLSTGPGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEG 62

Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF- 452
            +              ++L  + D + E++       T   T  N     SPDG      
Sbjct: 63  LL--------------YRLSLAGDPSPEKVD------TGFATICNNDHGISPDGALYAIS 102

Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH-NPDNVE 511
                G   +++L +      G   +L           WSP G    +   R    D   
Sbjct: 103 DKVEFGKSAIYLLPS-----TGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFD--- 154

Query: 512 AFSLYVIKPDGSGLRRI-HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV 570
              +Y +  D     R+ H  G     D          +S DG W+ F ++    M    
Sbjct: 155 ---IYSMDIDSGVETRLTHGEGRNDGPD----------YSPDGRWIYFNSSRTGQM---- 197

Query: 571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
                      ++ V++DGS + R+T + Y +  P   P
Sbjct: 198 ----------QIWRVRVDGSSVERITDSAYGDWFPHPSP 226

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297

 Score =  120 bits (304), Expect = 1e-30
 Identities = 59/320 (18%), Positives = 109/320 (34%), Gaps = 47/320 (14%)

Query: 253 DGKRLAVATRRKNRNFRHIEIYDLT-------LNPNFHHYNPFVSANSEFIGYHRFRGES 305
              RL+       R    IEI+++                 P  S + +++        S
Sbjct: 8   LHTRLSTGPGGSMR--SSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLL-----NS 60

Query: 306 TEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL-NAGIKIAKSDGS 364
                 +      +    +     +  +    SPDG L   +   E   + I +  S G 
Sbjct: 61  EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG 120

Query: 365 KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIP 424
               + K+  ++++ WSP  K   Y       + +     I    + +D           
Sbjct: 121 TPRLMTKNLPSYWHGWSPDGKSFTYCGI----RDQVF--DI----YSMDIDSGV------ 164

Query: 425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW 484
                LT  E G N  P  SPDG+++ F S R+G   ++ +   +G     + ++TD  +
Sbjct: 165 --ETRLTHGE-GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV-DG---SSVERITDSAY 217

Query: 485 IDTMPSWSPKGDLIAFSSNRHNPDNVEA---FSLYVIKPDGSGLRRIHVAGPEGSGDVDR 541
            D  P  SP GD + F S   +  +        + ++  DG  +  +      G G    
Sbjct: 218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL-FDLFGGQG---- 272

Query: 542 ERINHVCFSADGEWLLFTAN 561
             +N   +S DG+   +   
Sbjct: 273 -TMNSPNWSPDGDEFAYVRY 291

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 24/171 (14%), Positives = 42/171 (24%), Gaps = 34/171 (19%)

Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
           S     L    G S   ++ + +         +R +   P +   P+WSP G  +  +S 
Sbjct: 6   STLHTRLSTGPGGSMRSSIEIFNI----RTRKMRVVWQTPELFEAPNWSPDGKYLLLNSE 61

Query: 504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563
                        +         ++                N    S DG     +    
Sbjct: 62  GLLYR--------LSLAGDPSPEKVDTGFATIC-------NNDHGISPDGALYAISD--- 103

Query: 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP-GNQL 613
                             +Y++   G G  RL      +    W P G   
Sbjct: 104 -------KVEFGKS---AIYLLPSTG-GTPRLMTKNLPSYWHGWSPDGKSF 143

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 48/280 (17%), Positives = 82/280 (29%), Gaps = 49/280 (17%)

Query: 196 PTWSGD-STIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDG 254
           P WS D   +     ++   + +     P                   +         DG
Sbjct: 47  PNWSPDGKYLLL--NSEGLLYRLSLAGDPSP--------EKVDTGFATICNNDHGISPDG 96

Query: 255 KRLAVATRRKNRNFRHIEIYDLT------LNPNFHHYNPFVSANSEFIGYHRFRGESTEG 308
              A++ + +      I +   T      +  N   Y    S + +   Y   R +  + 
Sbjct: 97  ALYAISDKVEFGKSA-IYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFD- 154

Query: 309 QSTIPHLEPVASPVKEL-RMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS--K 365
              I  ++  +     L      N   P +SPDG  I FN        I   + DGS  +
Sbjct: 155 ---IYSMDIDSGVETRLTHGEGRNDG-PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE 210

Query: 366 RWTLIKDRTAFYN---SWSPTEKHVIYTS--TGPIFQSERATVQIARVSFQLDPSDDNNR 420
           R T     +A+ +     SP+   V++ S             V++  +       D  N 
Sbjct: 211 RIT----DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD-----MDGGN- 260

Query: 421 EEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGRSG 458
                 V+ L       G    P+ SPDG    +      
Sbjct: 261 ------VETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 36/314 (11%), Positives = 80/314 (25%), Gaps = 47/314 (14%)

Query: 56  DQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQI 115
              ++     S    I      + K  ++   P              L   S        
Sbjct: 9   HTRLSTGPGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLY--- 65

Query: 116 FKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDI 175
                 L      + +        + +    +S  G   A++               + I
Sbjct: 66  -----RLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDK--------VEFGKSAI 112

Query: 176 VVFQESDPNKRVIVCERGG--WPTWSGD-STIYFHRQADDGWWSIFRVSFPENLEFLGFP 232
            +   S      ++ +     W  WS D  +  +     D  + I+ +            
Sbjct: 113 YL-LPSTGGTPRLMTKNLPSYWHGWSPDGKSFTY-CGIRDQVFDIYSMDIDSG------- 163

Query: 233 IAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD--------LTLNPNFHH 284
              TR+T        P    DG+ +   + R  +    I            +T +     
Sbjct: 164 -VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQM--QIWRVRVDGSSVERITDSAYGD- 219

Query: 285 YNPFVSANSEFIGY-HRFRGESTEGQSTIPHLEPVASPVKELRML------RLNGSFPSF 337
           + P  S + + + +           +     ++ +      +  L      +   + P++
Sbjct: 220 WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNW 279

Query: 338 SPDGGLIVFNHDFE 351
           SPDG    +   F 
Sbjct: 280 SPDGDEFAYVRYFP 293

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045

 Score =  111 bits (279), Expect = 1e-25
 Identities = 63/551 (11%), Positives = 136/551 (24%), Gaps = 110/551 (19%)

Query: 122 LYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDI-VVFQE 180
           L+  DLK+    ++     V  +      G+ IA+            +    D+     E
Sbjct: 35  LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRG----SSLN--TADLYFYNGE 88

Query: 181 SDPNKRV--------IVCERGGWPTWSGDSTIYF---HRQADDGWWSIFRVSFPENLEFL 229
           +   KR+                  +  D  +       Q       ++RV         
Sbjct: 89  NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDG----- 143

Query: 230 GFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHI--------------EIYD 275
              I    +        T   F DG+R+      +  +++                  + 
Sbjct: 144 ---INFVPLNLGP---ATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK 197

Query: 276 LTLNPNFHHYNP--------FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRM 327
             ++ + H  +P        F++    F   +    +  + +      +         R 
Sbjct: 198 KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD---YYP---RH 251

Query: 328 LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHV 387
           L  +G    FS  G + +FN D E    I+I   +  +   +        +        +
Sbjct: 252 LNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLI 311

Query: 388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG 447
            + S G  F  + +   + +V        +  R                   +     D 
Sbjct: 312 AFVSRGQAFIQDVSGTYVLKVP-------EPLRI-----------------RYVRRGGDT 347

Query: 448 KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP 507
           K       R G               G   +  +             G     +++R   
Sbjct: 348 KVAFIHGTREGDFLGIYDYR-----TGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFE- 401

Query: 508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA 567
                  +  +  +      I  +      D           S +  ++ +         
Sbjct: 402 -------IMTVDLETGKPTVIERSREAMITDFT--------ISDNSRFIAYGFP------ 440

Query: 568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP-GNQLDLGKLRLEDDIGD 626
                         ++V  ++G  +   T     +  PA+      L     R  D   D
Sbjct: 441 -LKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499

Query: 627 KLRGQFDEPLW 637
           ++   F   + 
Sbjct: 500 RVVLNFSFEVV 510

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045

 Score = 83.3 bits (205), Expect = 1e-16
 Identities = 63/498 (12%), Positives = 125/498 (25%), Gaps = 83/498 (16%)

Query: 38  RLTDGTSINFNAQFV-DGQDQTIAFISERSGS---PRIYQTRPGSSKTELLPSIPCSLFH 93
           ++     +  NA+F  DG+   IA    R  S     +Y     + + + +         
Sbjct: 47  KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTG 104

Query: 94  DRPVAR------NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSV 147
            R          +  L   +   QP   F S + LY  +     F  L        +  +
Sbjct: 105 RRMFTDVAGFDPDGNLIISTDAMQP---FSSMTCLYRVENDGINFVPLNLG---PATHIL 158

Query: 148 SYSGKFIA-VASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-GWPTWSGDSTIY 205
              G+ +    ++E   W G        I +   S   K+++        P   G    +
Sbjct: 159 FADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYF 218

Query: 206 FHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP--GVHCFTPAAFHDGKRLAVATRR 263
                  G      +   +  +   F     R          F+             T +
Sbjct: 219 ITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGG--SIYIFNPDTEK 276

Query: 264 KNRNFRHIEIYDLTLNPNFHHYNP------FVSANSEFIGYHRFRGESTEGQSTIPHLEP 317
             +    IEI DL    +     P      F   + + I +   RG+             
Sbjct: 277 IEK----IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFV-SRGQ------------A 319

Query: 318 VASPVKELRMLRLNGS----FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR 373
               V    +L++       +     D  +   +   E +         G          
Sbjct: 320 FIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG 379

Query: 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE 433
             F        K  +  +        R  +        +D                + + 
Sbjct: 380 NVFAMGVDRNGKFAVVAND-------RFEIMT------VDLETGKPTV--------IERS 418

Query: 434 ETGNNAFPSCSPDGKFLVF-------RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID 486
                   + S + +F+ +        +     + + V D    +    I   T     D
Sbjct: 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHD 474

Query: 487 TMPSWSPKGDLIAFSSNR 504
             P++      + + S R
Sbjct: 475 YAPAFDADSKNLYYLSYR 492

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045

 Score = 74.4 bits (182), Expect = 7e-14
 Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 30/201 (14%)

Query: 444 SPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
           +PD  G  ++F        +L+  D       G  R++     +     + P G  IA  
Sbjct: 19  NPDIHGDRIIFVCCD----DLWEHDL-KS---GSTRKIVSNLGVINNARFFPDGRKIAIR 70

Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC-FSADGEWLLFTA 560
             R +  N     LY    +   ++RI            R     V  F  DG  ++ T 
Sbjct: 71  VMRGSSLN--TADLYFYNGENGEIKRITY---FSGKSTGRRMFTDVAGFDPDGNLIISTD 125

Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRL 620
            +             F     LY V+ DG     L                +  +G+   
Sbjct: 126 AMQP-----------FSSMTCLYRVENDGINFVPLNLGPAT---HILFADGRRVIGRNTF 171

Query: 621 EDDIGDKLRGQFDEPLWISCD 641
           E       RG     +WI  +
Sbjct: 172 ELPHWKGYRGGTRGKIWIEVN 192

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Length = 415

 Score = 99.1 bits (247), Expect = 2e-22
 Identities = 38/276 (13%), Positives = 90/276 (32%), Gaps = 53/276 (19%)

Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR-TAFYNSWSPTEKHVIYTSTG 393
           P++SPDG  + +       + + I          +          ++SP    + +    
Sbjct: 184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFAL-- 241

Query: 394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR 453
               S+  ++ +    + +D +           ++ +T +   NN  P+  PD + L F 
Sbjct: 242 ----SKTGSLNL----YVMDLASGQ--------IRQVT-DGRSNNTEPTWFPDSQNLAFT 284

Query: 454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF 513
           S ++G   ++ ++   G      +++T     +     S  G  +   S+          
Sbjct: 285 SDQAGRPQVYKVNINGG----APQRITWEGSQNQDADVSSDGKFMVMVSSNGG-----QQ 335

Query: 514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP 573
            +        G++ +     + +             + +G  ++++++ G          
Sbjct: 336 HIAKQDLATGGVQVLSSTFLDETP----------SLAPNGTMVIYSSSQGM--------- 376

Query: 574 NQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
                   L +V  DG    RL     +   PAW P
Sbjct: 377 -----GSVLNLVSTDGRFKARLPATDGQVKFPAWSP 407

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Length = 415

 Score = 94.9 bits (236), Expect = 6e-21
 Identities = 55/255 (21%), Positives = 109/255 (42%), Gaps = 53/255 (20%)

Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
           ++++  DG  ++ + +      + +WSP    + Y +    F+S R+ + I  +      
Sbjct: 161 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT----FESGRSALVIQTL------ 210

Query: 415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG 474
             +    ++             +N  P+ SPDG  L F   ++G  NL+V+D  +G+   
Sbjct: 211 -ANGAVRQVA--------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--- 258

Query: 475 DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE 534
            IRQ+TDG   +T P+W P    +AF+S++          +Y +  +G   +RI     E
Sbjct: 259 -IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ-----VYKVNINGGAPQRI---TWE 309

Query: 535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR 594
           GS      +      S+DG++++  ++ G           Q      +    L   G++ 
Sbjct: 310 GS------QNQDADVSSDGKFMVMVSSNG----------GQQH----IAKQDLATGGVQV 349

Query: 595 LTWNGYENGTPAWHP 609
           L+ + + + TP+  P
Sbjct: 350 LS-STFLDETPSLAP 363

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Length = 415

 Score = 70.2 bits (172), Expect = 5e-13
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 29/169 (17%)

Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTS 391
           P++ PD   + F  D      +     +G     +  + +   N     S   K ++  S
Sbjct: 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS--QNQDADVSSDGKFMVMVS 329

Query: 392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV 451
                 S      IA+     D +           V++L+   T  +  PS +P+G  ++
Sbjct: 330 ------SNGGQQHIAK----QDLATGG--------VQVLS--STFLDETPSLAPNGTMVI 369

Query: 452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF 500
           + S +     L ++   +G       +L         P+WSP       
Sbjct: 370 YSSSQGMGSVLNLVS-TDG---RFKARLPATDGQVKFPAWSPYLHHHHH 414

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Length = 415

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 47/297 (15%), Positives = 104/297 (35%), Gaps = 36/297 (12%)

Query: 102 KLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYES 161
           ++ ++         ++    L  +D        +        SP+ S  G  +A  ++ES
Sbjct: 145 RIAYVVQTNGGQFPYE----LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES 200

Query: 162 RPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFR 219
                      + +V+   ++   R +       G P +S D +      +  G  +++ 
Sbjct: 201 G---------RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 251

Query: 220 VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNR------NFRHIEI 273
           +                +VT    +   P  F D + LA  + +  R      N      
Sbjct: 252 MDLASG--------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 303

Query: 274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGS 333
             +T   +  + +  VS++ +F+      G    GQ  I   +     V+ L    L+ +
Sbjct: 304 QRITWEGSQ-NQDADVSSDGKFMVMVSSNG----GQQHIAKQDLATGGVQVLSSTFLDET 358

Query: 334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIY 389
            PS +P+G +++++    + + + +  +DG  +  L          +WSP   H  +
Sbjct: 359 -PSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLHHHHH 414

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Length = 415

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 11/127 (8%)

Query: 36  EHRLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHD 94
             ++TDG S N    +  D Q   +AF S+++G P++Y+        + +          
Sbjct: 259 IRQVTDGRSNNTEPTWFPDSQ--NLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA 316

Query: 95  RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFI 154
              +    +  +S++     I          DL       L+    +D +PS++ +G  +
Sbjct: 317 DVSSDGKFMVMVSSNGGQQHI-------AKQDLATGGVQVLSS-TFLDETPSLAPNGTMV 368

Query: 155 AVASYES 161
             +S + 
Sbjct: 369 IYSSSQG 375

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Length = 415

 Score = 47.5 bits (113), Expect = 8e-06
 Identities = 28/255 (10%), Positives = 71/255 (27%), Gaps = 46/255 (18%)

Query: 34  FHEHRLTDGTSINFNAQFV-DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLF 92
           +++  +        +  +  DG    +A+++  SG   +      +     + S P    
Sbjct: 169 YNQFVVHRSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG 226

Query: 93  HDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGK 152
                   +KL F  +             LY  DL + +  ++T     +  P+     +
Sbjct: 227 APAFSPDGSKLAFALSKT-------GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ 279

Query: 153 FIAVASYES-RPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWS--GDSTIYFH 207
            +A  S ++ RP           +     +    + I  E         S  G   +   
Sbjct: 280 NLAFTSDQAGRP----------QVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVS 329

Query: 208 RQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVH---CFTPAAFHDGKRLAVATRRK 264
                G   I +                  ++   +       P    +G  +  ++ + 
Sbjct: 330 SN--GGQQHIAKQDLATGGV--------QVLSSTFLDETPSLAP----NGTMVIYSSSQG 375

Query: 265 NRNFRHIEIYDLTLN 279
             +     +  ++ +
Sbjct: 376 MGS----VLNLVSTD 386

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Length = 396

 Score = 70.0 bits (170), Expect = 6e-13
 Identities = 34/234 (14%), Positives = 67/234 (28%), Gaps = 52/234 (22%)

Query: 426 DVKILTKEETGNNAF----PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481
            V  LT  +   +         + DGK L+F     G++N ++L+    +      QLT+
Sbjct: 22  KVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ----AVQLTE 77

Query: 482 GPWIDTM-PSWSPKGDLIAFSSNRHN-----------------PDNVEAFSLYVIKPDGS 523
           G   +T     S       +  N  N                  +  + +  +V   D +
Sbjct: 78  GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCT 137

Query: 524 GLRRIHVAGPEGSGDVDRERINHVCFSADGEWL-----------------------LFTA 560
            L  I +   +       E+      +     L                       ++  
Sbjct: 138 KLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRP 197

Query: 561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHPGNQ 612
              + +      P+       +++V  DGS +R++     G       W P   
Sbjct: 198 FDDSTVGFCHEGPHDLVDA-RMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS 250

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Length = 396

 Score = 67.3 bits (163), Expect = 5e-12
 Identities = 60/368 (16%), Positives = 114/368 (30%), Gaps = 59/368 (16%)

Query: 236 TRVTPPGVHC----FTPAAFH-DGKRLAVATRRKNRNFRHIEIYD--------LTLNPNF 282
           TR+TP  + C    F    F  DGK+L  A        R+  + +        LT     
Sbjct: 24  TRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGN--RNYYLLNLETQQAVQLTEGKGD 81

Query: 283 HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGG 342
           + +  F+S +     Y +              L  +   ++ L    +  +        G
Sbjct: 82  NTFGGFISTDERAFFYVK------------NELNLMKVDLETLEEQVIY-TVDEEWKGYG 128

Query: 343 LIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERAT 402
             V N D     GI+I K D     +  K    FY++        +   TG +    + T
Sbjct: 129 TWVANSDCTKLVGIEILKRDWQPLTSWEKFA-EFYHTNPTCRLIKVDIETGELEVIHQDT 187

Query: 403 VQIARVSFQLD------PSDDNNREEIPCDV-----------KILTKEETGNNAFPSCSP 445
             +    ++           +   + +   +           KI    E  +       P
Sbjct: 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP 247

Query: 446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH 505
           DG  + + S   G  +  +    N E   +  ++   P   +    +  G L+       
Sbjct: 248 DGSAMAYVSYFKGQTDRVI-YKANPE-TLENEEVMVMPP-CSHLMSNFDGSLMVGDGCDA 304

Query: 506 NPDNVEAFS--------LYVIKPDGSGLRRI--HVAGPEGSGDVDRERINHVCFSADGEW 555
             D  +A S        LYV+       +++  H    +      +    H  F+ + + 
Sbjct: 305 PVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDG 364

Query: 556 LLFTANLG 563
           +LFT++  
Sbjct: 365 VLFTSDFE 372

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Length = 396

 Score = 61.9 bits (149), Expect = 3e-10
 Identities = 40/391 (10%), Positives = 96/391 (24%), Gaps = 42/391 (10%)

Query: 114 QIFKSWSALYSTDLKASKFTRLTPYGVVD-----YSPSVSYSGKFIAVASYESRPWPGEF 168
            +       +       K TRLTP  ++      Y    +  GK +  A           
Sbjct: 5   DVITLNFETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDG------ 58

Query: 169 HELNTDIVVFQESDPNKRVIVCERGGW---PTWSGDSTIYFHRQADDGWWSIFRVSFPEN 225
              N +  +          +   +G        S D   +F+ + +     +   +  E 
Sbjct: 59  ---NRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115

Query: 226 L---------EFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL 276
           +          +  +          G+                A          +   D+
Sbjct: 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI 175

Query: 277 T-------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLR 329
                           +P      +        G      + +  +    S V++++   
Sbjct: 176 ETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHA 235

Query: 330 LNGSF--PSFSPDGGLIVFNHDFELNAGIKIAKSDGS--KRWTLIKDRTAFYNSWSPTEK 385
              S     + PDG  + +   F+      I K++    +   ++      +   +    
Sbjct: 236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGS 295

Query: 386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI-----PCDVKILTKEETGNNAF 440
            ++            A          L   +   +             +L  +    +  
Sbjct: 296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPH 355

Query: 441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE 471
           PS +P+   ++F S   G   +++ D     
Sbjct: 356 PSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Length = 396

 Score = 55.4 bits (132), Expect = 3e-08
 Identities = 25/283 (8%), Positives = 79/283 (27%), Gaps = 27/283 (9%)

Query: 335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGP 394
              S D     +  +      + + ++   +    + +    Y +W              
Sbjct: 86  GFISTDERAFFYVKNELNLMKVDL-ETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEI 144

Query: 395 IFQSERATVQIARVSFQLDPSDDNNREEIPCD---VKILTKEETGNNAFPSCSPDGKFLV 451
           + +  +      + +     +      ++  +   ++++ ++            D   + 
Sbjct: 145 LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVG 204

Query: 452 FRSGRSGHKN---LFVLDAVNGEFNGDIRQLTDGPW--IDTMPSWSPKGDLIAFSSNRHN 506
           F            +++++  +G    ++R++ +       T   W P G  +A+ S    
Sbjct: 205 FCHEGPHDLVDARMWLVNE-DG---SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG 260

Query: 507 PDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM 566
             +       + K +   L    V              +H+  + DG  ++      A +
Sbjct: 261 QTDR-----VIYKANPETLENEEVMVMPPC--------SHLMSNFDGSLMVGDGC-DAPV 306

Query: 567 AEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
               +     +    LYV+       ++L  +           
Sbjct: 307 DVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDR 349

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Length = 396

 Score = 45.0 bits (105), Expect = 5e-05
 Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 22/140 (15%)

Query: 474 GDIRQLTDGPWID-----TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI 528
             + +LT    I          ++  G  + F+ +     N      Y++  +     ++
Sbjct: 21  VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRN-----YYLLNLETQQAVQL 75

Query: 529 HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD 588
                EG GD           S D     +  N   +M   +    +      +Y V  +
Sbjct: 76  ----TEGKGDNTF----GGFISTDERAFFYVKNELNLMKVDL----ETLEEQVIYTVDEE 123

Query: 589 GSGLRRLTWNGYENGTPAWH 608
             G      N          
Sbjct: 124 WKGYGTWVANSDCTKLVGIE 143

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388

 Score = 69.9 bits (170), Expect = 7e-13
 Identities = 53/356 (14%), Positives = 92/356 (25%), Gaps = 70/356 (19%)

Query: 196 PTWSGD-STIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT-PPGVHCFTPAAFHD 253
             ++ D S + F   A DG W+ + +               T++T   G + F      D
Sbjct: 41  KCFTRDGSKLLFGG-AFDGPWNYYLLDLNTQ--------VATQLTEGRGDNTFGGFLSPD 91

Query: 254 GKRLAVATRRKNR------NFRHIEIYDLTLNPNFHHYNPFVSANSEFIGY-HRFRGEST 306
              L      +N             +Y +      +      S  ++ +G   R      
Sbjct: 92  DDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVP 151

Query: 307 EGQSTIPHLEPVASPVKELRMLRLNG-------------SFPSFSPDGG-LIVFNHDF-- 350
                  H      P   L  + L                 P + P     + F H+   
Sbjct: 152 LTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPH 211

Query: 351 -ELNAGIKIAKSDGSKRWTLIKDRTAFYN---SWSPTEKHVIYTSTGPIFQSERATVQIA 406
             ++A + +   DG+    +             W P    ++Y S    +        I 
Sbjct: 212 DLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVS----YLKGSPDRFI- 266

Query: 407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR------SGHK 460
              +  DP    NR+               N        DG                   
Sbjct: 267 ---YSADPETLENRQLTSMPA---CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP 320

Query: 461 NLFVLDAVNGEFNGDIRQLT-----------DGPWIDTMPSWSPKGDLIAFSSNRH 505
            L+V +  NG       ++            D       PS++P    I F+S+ H
Sbjct: 321 FLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH 372

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388

 Score = 68.7 bits (167), Expect = 1e-12
 Identities = 56/355 (15%), Positives = 101/355 (28%), Gaps = 37/355 (10%)

Query: 236 TRVTPPGVHC----FTPAAF-HDGKRLAVATRRKNR------NFRHIEIYDLTLNPNFHH 284
           TR+TPP V C    F    F  DG +L               +        LT     + 
Sbjct: 24  TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNT 83

Query: 285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLI 344
           +  F+S + + + Y +           +       + V ++    +       + D   +
Sbjct: 84  FGGFLSPDDDALFYVK----DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKL 139

Query: 345 VFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ 404
           V       +           + +                E  VI      +         
Sbjct: 140 VGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYD 199

Query: 405 IARVSFQLDPSDDNNREEI------PCDVKILTKEETGNNAF-PSCSPDGKFLVFRSGRS 457
            + V+F  +   D     +        +++ +     G +       PDG  LV+ S   
Sbjct: 200 DSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLK 259

Query: 458 GHKNLFV--LDAVNGEFNGDIRQLTDGPWIDTM------PSWSPKGDLIAFSSNRHNPDN 509
           G  + F+   D    E     RQLT  P    +            G          +   
Sbjct: 260 GSPDRFIYSADPETLE----NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315

Query: 510 VEAFS-LYVIKPDGSGLRRI-HVAGPEGSGDVDRERIN-HVCFSADGEWLLFTAN 561
           +E    LYV         R+          + DR+  + H  F+ D + +LFT++
Sbjct: 316 IENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388

 Score = 59.5 bits (143), Expect = 1e-09
 Identities = 36/362 (9%), Positives = 90/362 (24%), Gaps = 47/362 (12%)

Query: 272 EIYDLTLNPNFHH----YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRM 327
           ++  LT      H    Y    + +   + +         G      L+       +L  
Sbjct: 22  QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFD----GPWNYYLLDLNTQVATQLTE 77

Query: 328 LRLNGSF-PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKH 386
            R + +F    SPD   + +  D      + +A  + +  + +  +   +    + ++  
Sbjct: 78  GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT 137

Query: 387 VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC--DVKILTKEETGNNAFPSCS 444
            +             T       F                 +  ++  +E      P   
Sbjct: 138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYR 196

Query: 445 PDGK----FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWID--TMPSWSPKGDLI 498
           P       F            +++++        ++R++      +  T   W P G  +
Sbjct: 197 PYDDSTVAFCHEGPHDLVDARMWLINEDGT----NMRKVKTHAEGESCTHEFWVPDGSAL 252

Query: 499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF 558
            + S      +      ++   D   L    +        +       +    DG     
Sbjct: 253 VYVSYLKGSPDR-----FIYSADPETLENRQLTSMPACSHLMSNYDGSL-MVGDGSDAPV 306

Query: 559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGT-----------PAW 607
                +          + +    LYV  +      R+  +                 P++
Sbjct: 307 DVQDDSGY--------KIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSF 358

Query: 608 HP 609
            P
Sbjct: 359 TP 360

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388

 Score = 54.8 bits (131), Expect = 4e-08
 Identities = 44/378 (11%), Positives = 85/378 (22%), Gaps = 56/378 (14%)

Query: 101 NKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPY-GVVDYSPSVSYSGKFIAVASY 159
           +KL F  A + P          Y  DL     T+LT   G   +   +S     +     
Sbjct: 48  SKLLFGGAFDGPWNY-------YLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALF---- 96

Query: 160 ESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFR 219
                   + +   +++    +   + V+      W  +             D    +  
Sbjct: 97  --------YVKDGRNLMRVDLATLEENVVYQVPAEWVGYGT------WVANSDCTKLVGI 142

Query: 220 VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLN 279
               E+   L               C             V  +                 
Sbjct: 143 EIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGH------PIYR 196

Query: 280 PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP 339
           P       F       +   R    + +G +           VK             + P
Sbjct: 197 PYDDSTVAFCHEGPHDLVDARMWLINEDGTN--------MRKVKTHAEGESCTH-EFWVP 247

Query: 340 DGGLIVFNHDFELNAGIKIAKSD---GSKRWTLIKDRTAFYNS------WSPTEKHVIYT 390
           DG  +V+    + +    I  +D      R        +   S                 
Sbjct: 248 DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD 307

Query: 391 STGPIFQSERATVQIARVSFQLDPSDDNNRE--EIPCDVKILTKEETGNNAFPSCSPDGK 448
                         +    +  +  +             K+   +    +  PS +PD K
Sbjct: 308 VQDDSGYKIENDPFL----YVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDK 363

Query: 449 FLVFRSGRSGHKNLFVLD 466
            ++F S   G   L++  
Sbjct: 364 QILFTSDVHGKPALYLAT 381

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 47/356 (13%), Positives = 79/356 (22%), Gaps = 50/356 (14%)

Query: 38  RLTDGTSINFNAQFV------DGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSL 91
           RLT          F       DG    + F     G    Y     +     L       
Sbjct: 25  RLTPPDVTCHRNYFYQKCFTRDGS--KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDN 82

Query: 92  FHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSG 151
                ++ ++   F     +          +    L+ +   ++    V   +   +   
Sbjct: 83  TFGGFLSPDDDALFYVKDGRNLM------RVDLATLEENVVYQVPAEWVGYGTWVANSDC 136

Query: 152 KFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQA- 210
             +         W             F +       +  + G       ++    H    
Sbjct: 137 TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYR 196

Query: 211 -DDGWWSIFRVSFPENLEFL--------GFPIAPTRVTPPGVHCFTPAAFHDGKRLAVAT 261
             D     F    P +L           G  +   +    G  C       DG  L   +
Sbjct: 197 PYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVS 256

Query: 262 RRKNRNFRHIEIYD--------LTLNPNFHHYNPFVSA-------NSEFIGYHRFRGEST 306
             K    R I   D        LT  P   H              +   +      G   
Sbjct: 257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI 316

Query: 307 EGQSTIP-------HLEPVASPVKELRMLRLNGSF----PSFSPDGGLIVFNHDFE 351
           E    +            VA      ++   +       PSF+PD   I+F  D  
Sbjct: 317 ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH 372

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Length = 388

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 23/180 (12%), Positives = 38/180 (21%), Gaps = 41/180 (22%)

Query: 474 GDIRQLTDGPWID-----TMPSWSPKGDLIAFSSNRHNPDNVEAFSLY------------ 516
             + +LT               ++  G  + F      P N     L             
Sbjct: 21  AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG 80

Query: 517 ------VIKPDGSGLRRIHVAGPEGSGDVDRERINHV-------------CFSADGEWLL 557
                  + PD   L  +         D+     N V               ++D   L+
Sbjct: 81  DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLV 140

Query: 558 FTANLGAVMAEPVSWP-----NQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ 612
                         W         +P   L  V L       +       G P + P + 
Sbjct: 141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDD 200

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582

 Score = 70.2 bits (172), Expect = 8e-13
 Identities = 28/166 (16%), Positives = 43/166 (25%), Gaps = 34/166 (20%)

Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
             DG  L+      G  N ++ D       G+  +L   P    +      G +I     
Sbjct: 30  VVDGDKLLVVGFSEGSVNAYLYD------GGETVKLNREPINSVLDPHYGVGRVILVRDV 83

Query: 504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG 563
                  E  +L+ +     G         +    V   RI        GE ++FT    
Sbjct: 84  S---KGAEQHALFKVNTSRPG-------EEQRLEAVKPMRILS--GVDTGEAVVFTGA-- 129

Query: 564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP 609
                             + +  LDG GLR L              
Sbjct: 130 --------------TEDRVALYALDGGGLRELARLPGFGFVSDIRG 161

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 45/319 (14%), Positives = 79/319 (24%), Gaps = 50/319 (15%)

Query: 328 LRLNGSFPSFSPDGGLIVFNHDF---ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTE 384
             +N         G +I+        E +A  K+  S   +   L   +     S   T 
Sbjct: 62  EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTG 121

Query: 385 KHVIYTSTG--PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS 442
           + V++T      +         +  ++                          G      
Sbjct: 122 EAVVFTGATEDRVALYALDGGGLRELA-----------------------RLPGFGFVSD 158

Query: 443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
              D           G  +LF  +  +G     +R    G    +  S SP   + A   
Sbjct: 159 IRGDL-IAGLGFFGGGRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLE 213

Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
                       L  + P    +  + +   + S       I  + +  DG  L   A  
Sbjct: 214 TAREAR------LVTVDPRDGSVEDLELPSKDFS-SYRPTAITWLGYLPDG-RLAVVARR 265

Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN--QLDLGKLRL 620
               A  +       P G+   V L    L   +            P     L  G+  L
Sbjct: 266 EGRSAVFIDGERVEAPQGNHGRVVLWRGKL-VTSHTSLS------TPPRIVSLPSGEPLL 318

Query: 621 EDDIGDKLRGQFDEPLWIS 639
           E  + + LR        + 
Sbjct: 319 EGGLPEDLRRSIAGSRLVW 337

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 34/237 (14%), Positives = 67/237 (28%), Gaps = 22/237 (9%)

Query: 331 NGSFPSFSPDGGLIVF--NHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVI 388
           N + P  SPDG  I F   ++ +  + I +A  +      +++ +      W+   + ++
Sbjct: 60  NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLL 119

Query: 389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI---PCDVKILTKEETGNNAFPSCSP 445
                     +          F      D  +        + + + +E            
Sbjct: 120 IVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWH 179

Query: 446 DGKFLVFRSGRSGHKNLF-VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR 504
             K +V    R      F   D    E +G   ++ +     +  +    G+ I      
Sbjct: 180 RDKIVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK---VSFYAVDSDGERILLYGKP 235

Query: 505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561
                 E   LY+   DG  +  I         +VDR              + FT  
Sbjct: 236 EKKYMSEHNKLYIY--DGKEVMGI-------LDEVDR---GVGQAKIKDGKVYFTLF 280

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 31/291 (10%), Positives = 77/291 (26%), Gaps = 51/291 (17%)

Query: 338 SPDGGLIVF---NHDFELNAG---IKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTS 391
              G L+ +     + + N     I I     + R  +           SP  K + +  
Sbjct: 21  RTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFIENATMP---RISPDGKKIAFMR 77

Query: 392 TGP------IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL-TKEETGNNAFPSCS 444
                    I+ ++  T+   ++    +       E      K+L    +   +      
Sbjct: 78  ANEEKKVSEIWVADLETLSSKKILEAKNIRSL---EWNEDSRKLLIVGFKRREDEDFIFE 134

Query: 445 PDGKFLVFRSGRSGHKN--LFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS 502
            D        G    +    ++ D  + E    + +  + P   +   W     ++    
Sbjct: 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEE----VIEEFEKPRFSS-GIWHRDKIVVNVPH 189

Query: 503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL 562
               P   + + +Y+   +     ++             E+++     +DGE +L     
Sbjct: 190 REIIPQYFKFWDIYIW--EDGKEEKMF------------EKVSFYAVDSDGERILLYGK- 234

Query: 563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
                     P +        +   DG  +  +          A     ++
Sbjct: 235 ----------PEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKDGKV 275

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347

 Score = 66.0 bits (161), Expect = 8e-12
 Identities = 29/246 (11%), Positives = 60/246 (24%), Gaps = 47/246 (19%)

Query: 375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE 434
           A+ +      + V Y  T    +  +    I          +  N               
Sbjct: 15  AYLSDPRTKGELVAYVLTKANLKDNKYENTIVIE-------NLKNNARRF---------- 57

Query: 435 TGNNAFPSCSPDGKFLVFRSGRSGHKN--LFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS 492
             N   P  SPDGK + F       K   ++V D          +++ +   I +   W+
Sbjct: 58  IENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS----SKKILEAKNIRS-LEWN 112

Query: 493 PKGDLIAFSSNRHNPD-NVEAFSLYVIKPDGSG--------LRRIHVAGPEGSGDVDRER 543
                +     +   D +           D  G                 E   + ++ R
Sbjct: 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPR 172

Query: 544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENG 603
            +   +  D   +                  Q+  + D+Y+   +     ++        
Sbjct: 173 FSSGIWHRDKIVVNVPHR---------EIIPQYFKFWDIYI--WEDGKEEKMFEK---VS 218

Query: 604 TPAWHP 609
             A   
Sbjct: 219 FYAVDS 224

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 49/372 (13%), Positives = 97/372 (26%), Gaps = 88/372 (23%)

Query: 146 SVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGD-STI 204
                G+ +A   Y       + ++    IV+    +  +R I  E    P  S D   I
Sbjct: 19  DPRTKGELVA---YVLTKANLKDNKYENTIVIENLKNNARRFI--ENATMPRISPDGKKI 73

Query: 205 YFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT-PPGVHCFTPAAFHDGKRLAVATRR 263
            F R  ++   S   V+  E L          ++     +         D ++L +   +
Sbjct: 74  AFMRANEEKKVSEIWVADLETLS-------SKKILEAKNIRSLEWN--EDSRKLLIVGFK 124

Query: 264 KNRN----------------------FRHIEIYDL------TLNPNFHHYNPFVSANSEF 295
           +  +                           I+D                +     +   
Sbjct: 125 RREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKIV 184

Query: 296 IGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVF---NHDFEL 352
           +                  +        +   +    SF +   DG  I+         +
Sbjct: 185 VNVPHREII--PQYFKFWDIYIWED--GKEEKMFEKVSFYAVDSDGERILLYGKPEKKYM 240

Query: 353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF 410
           +   K+   DG +   ++   DR          +  V +T        E  +V +     
Sbjct: 241 SEHNKLYIYDGKEVMGILDEVDRGVG--QAKIKDGKVYFTLF------EEGSVNLYIWD- 291

Query: 411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH-KNLFVLDAVN 469
                          ++K + K       F     D   +V+    +   + LF  D   
Sbjct: 292 --------------GEIKPIAKGRHWIMGF---DVDEI-VVYLKETATRLRELFTWD--- 330

Query: 470 GEFNGDIRQLTD 481
               G+ +QLTD
Sbjct: 331 ----GEEKQLTD 338

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 34/198 (17%), Positives = 53/198 (26%), Gaps = 37/198 (18%)

Query: 430 LTKEETGNN----AFPSCSPDGKFLVF-------RSGRSGHKNLFVLDAVNGEFN--GDI 476
           LT           A P   P+   +                + L  +            +
Sbjct: 120 LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179

Query: 477 RQLTDGPWID-TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV--IKPDGSGLRRIHVAGP 533
           R+L+D      T P  SP G    + +  H     E   L    +  DG       + G 
Sbjct: 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239

Query: 534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR 593
                   E I    ++ DG  ++ T   G               + +L+ V        
Sbjct: 240 PE------EAIAQAEWAPDGSLIVATDRTG---------------WWNLHRVDPATGAAT 278

Query: 594 RLTWNGYENGTPAWHPGN 611
           +L     E   P W PG 
Sbjct: 279 QLCRREEEFAGPLWTPGM 296

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 39/282 (13%), Positives = 68/282 (24%), Gaps = 92/282 (32%)

Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTST 392
           + P  SPDG   V+           +A       W   + +TA                 
Sbjct: 191 TGPRLSPDGRQAVW-----------LAWDHPRMPWEGTELKTA----------------- 222

Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
                                 ++D    +       L        A    +PDG  +V 
Sbjct: 223 --------------------RVTEDGRFADTRT----LLGGPEEAIAQAEWAPDGSLIVA 258

Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW-------SPKGDLIAFSSNRH 505
            + R+G  NL  +D   G       QL         P W       +P  + +    +  
Sbjct: 259 -TDRTGWWNLHRVDPATGA----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK 313

Query: 506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV 565
                 A  L ++ P+   L        E +             +  G   +  A   A 
Sbjct: 314 G-----AAVLGILDPESGELVDAAGPWTEWAAT----------LTVSGTRAVGVA---AS 355

Query: 566 MAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW 607
                          ++  +       R +     +   PA+
Sbjct: 356 PRTA----------YEVVELDTVTGRARTIGARHTDPVDPAY 387

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 35/290 (12%), Positives = 80/290 (27%), Gaps = 48/290 (16%)

Query: 330 LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIY 389
            N     F    G + F+ +   N  +     DGS    L  D   + N     + +V Y
Sbjct: 16  YNAGL--FCESDGEVFFS-NTNDNGRLYAMNIDGSNIHKLSNDTAMYIN---ADKNYVYY 69

Query: 390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKF 449
                   + +      R S      + +    +              +     S  G +
Sbjct: 70  VRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVL------------DPDPCIYASLIGNY 117

Query: 450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN 509
           + +    +          ++G    + +++ +      + + +       +++ ++    
Sbjct: 118 IYYLHYDTQTATSLYRIRIDG---EEKKKIKNHY----LFTCNTSDRYFYYNNPKNG--- 167

Query: 510 VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG-----A 564
                LY            +         +D   +       + +  +   N+       
Sbjct: 168 ----QLYRYDTASQSEALFYDCNCYKPVVLDDTNV--YYMDVNRDNAIVHVNINNPNPVV 221

Query: 565 VMAEPVSWPN------QFQPYGD---LYVVKLDGSGLRRLTWNGYENGTP 605
           +    +   N       +Q  GD   L VVK DG+G + L    + N   
Sbjct: 222 LTEANIEHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKGEFCNINV 271

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 19/144 (13%)

Query: 427 VKILTKEETG-----NNAFPSCSPDGKFLVF-----RSGRSGHKNLFVLDAVNGEFNGDI 476
                ++E+       N  P  S DG+   F     + GR    ++ V  +     N +I
Sbjct: 292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI 351

Query: 477 RQLTDGPW-IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG 535
           + +T G W +  + ++  KG+ I F S    P   +   LY     G+  R+        
Sbjct: 352 QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQ---LYSANTVGNFNRQCLS----- 403

Query: 536 SGDVDRERINHVCFSADGEWLLFT 559
              V+        FS   ++ L  
Sbjct: 404 CDLVENCTYFSASFSHSMDFFLLK 427

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 28/190 (14%), Positives = 49/190 (25%), Gaps = 37/190 (19%)

Query: 428 KILTKEETGNNAF------PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD 481
           K +T E+  +  F           D +F+     R     + + +         I     
Sbjct: 3   KKVTVEDLFSEDFKIHDPEAKWISDTEFIY----REQKGTVRLWNVETNTSTVLIEGKKI 58

Query: 482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDR 541
                     SP  +   FS N            YV+     G  +          +V  
Sbjct: 59  ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-----SLDPPEVSN 113

Query: 542 ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE 601
            ++ +  +   G+ L+F                      ++Y     G    R+   G E
Sbjct: 114 AKLQYAGWGPKGQQLIFIFE------------------NNIYYCAHVGKQAIRVVSTGKE 155

Query: 602 ----NGTPAW 607
               NG   W
Sbjct: 156 GVIYNGLSDW 165

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 22/124 (17%)

Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
           SPD + L+F  G      L++ D         +RQLT G    T    SPKG  ++F   
Sbjct: 117 SPDAQRLLFPLG----GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGFVSFIRG 171

Query: 504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE----GSGD-VDRE---RINHVCFSADGEW 555
             N        L+VI        ++   G      G  + V  E   R     ++ D   
Sbjct: 172 -RN--------LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA 222

Query: 556 LLFT 559
           + + 
Sbjct: 223 IAYA 226

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 53/439 (12%), Positives = 114/439 (25%), Gaps = 114/439 (25%)

Query: 245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGE 304
               +     ++L +             +    + P+          +S+      +  +
Sbjct: 11  MLATSTVAHAEKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYD 70

Query: 305 STEGQSTI--------PHLEPVASPVKELRMLRLNGSFP-----SFSPDGGLIVFNHDFE 351
              GQ+ +        P  E ++   K  R  +   +        +SPD   ++F     
Sbjct: 71  IGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLF----P 126

Query: 352 LNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR 407
           L   + +       +  + +    +  A     SP    V +     ++  + A+ +  +
Sbjct: 127 LGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ 186

Query: 408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF----RSG-------- 455
           ++     +  N    I   V     EE   +     +PD   + +     S         
Sbjct: 187 LTADGSTTIGNG---IAEFV---ADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE 240

Query: 456 --------------RSGHKN----LFVLDAVNGEFNGDIRQLTDGPWID---TMPSWSPK 494
                          +G  N    L V+           + +  G   D      +W   
Sbjct: 241 VYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ---AQTQWIDLGKEQDIYLARVNWRDP 297

Query: 495 GDLIAFSSNRH---------NPDN--------------VEAFSLYVIKPDGS-------- 523
             L     +R             +              V   +      DGS        
Sbjct: 298 QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERT 357

Query: 524 GLRRIHVAGPEG------SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQ 577
           G + ++    +G       G+   + +  V          F A + +          + Q
Sbjct: 358 GFQHLYRIDSKGKAAALTHGNWSVDELLAV--DEKAGLAYFRAGIES--------ARESQ 407

Query: 578 PYGDLYVVKLDGSGLRRLT 596
               +Y V L G   +RL+
Sbjct: 408 ----IYAVPLQGGQPQRLS 422

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 27/179 (15%), Positives = 48/179 (26%), Gaps = 36/179 (20%)

Query: 444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN 503
           +PDG  + F  G+   +N   L + +   +G  R L D   +          +       
Sbjct: 45  APDGSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKAR--RE 101

Query: 504 RHNPDNVEAFSLYVIKPDGSGLR-----RIHV-------AGPEGSGDVDRERINHVCFSA 551
           R     +     Y   PD   L       +++                          S 
Sbjct: 102 RQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP 161

Query: 552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE---NGTPAW 607
            G ++ F                      +L+V+ L      +LT +G     NG   +
Sbjct: 162 KGGFVSFIRG------------------RNLWVIDLASGRQMQLTADGSTTIGNGIAEF 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-05
 Identities = 68/438 (15%), Positives = 129/438 (29%), Gaps = 101/438 (23%)

Query: 10  TTVGRPYYGF-DVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGS 68
              G   Y + D+ S     V    F +         NF+ + V  QD   + +S+    
Sbjct: 9   FETGEHQYQYKDILS-----VFEDAFVD---------NFDCKDV--QDMPKSILSKEE-I 51

Query: 69  PRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLK 128
             I  ++   S T  L     S   +  V +     F+    + +  F   S + +   +
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLS-KQEEMVQK-----FVEEVLRINYKF-LMSPIKTEQRQ 104

Query: 129 ASKFTRLTPYGV-VDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV 187
            S  TR+        Y+ +  ++   +      SR  P  + +L        E  P K V
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNV------SRLQP--YLKLRQ---ALLELRPAKNV 153

Query: 188 IVCERGGWPTWSGDSTI--------YFHRQADDG--WWSIFRVSFP----ENLEFLGFPI 233
           ++    G    SG + +            + D    W ++   + P    E L+ L + I
Sbjct: 154 LIDGVLG----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 234 APTRVTPPGVHCFTPAAFHDGK----RLAVATRRKN--------RNFRHIEIYDL---TL 278
            P   +            H  +    RL  +   +N        +N +    ++L    L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 279 NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLR--LNGSFPS 336
                      +   +      F   +T    ++ H     +P +   +L   L+     
Sbjct: 270 ---------LTTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRW---------TLIKDRTAFYNSWSPTEKHV 387
              +       +   L + I  +  DG   W          L     +  N   P E   
Sbjct: 318 LPREVLTT---NPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 388 IYTSTGPIFQSERATVQI 405
           ++     +F        I
Sbjct: 374 MFDRLS-VFPPS---AHI 387

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 29/134 (21%)

Query: 442 SCSPDGKFLVFRSG------RSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG 495
             SPD +F+   S        S     ++ D  NGE      +  + P       WSP G
Sbjct: 66  GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE----FVRGNELPRPIQYLCWSPVG 121

Query: 496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEG------SGDVDRERINH--- 546
             +A+    +N        +Y+ +  G    +I   G E          V  E +     
Sbjct: 122 SKLAYVYQ-NN--------IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172

Query: 547 -VCFSADGEWLLFT 559
            + +S +G++L + 
Sbjct: 173 ALWWSPNGKFLAYA 186

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 43/319 (13%), Positives = 76/319 (23%), Gaps = 99/319 (31%)

Query: 333 SFPSFSPDGGLIVFNHDFEL-NAGIKIAKSDGSKRWTLIKD--RTAFYNS---------- 379
           +   FSP G  + +  +  L  A         S+   +  D   T  Y            
Sbjct: 124 ASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIE 183

Query: 380 ----WSPTEKH----------------VIYTSTGPIFQSER--------ATVQI------ 405
               WSP                    V Y       +             V +      
Sbjct: 184 KGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA 243

Query: 406 --ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK--N 461
               V  Q     +    +   ++                SPD   L             
Sbjct: 244 TGKTVYLQTGEPKE----KFLTNLSW--------------SPDENILYVAEVNRAQNECK 285

Query: 462 LFVLDAVNGEFNGDIRQLTDGPWID---TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI 518
           +   DA  G F   +   TD  +++    +       +   + S R   ++     LY+ 
Sbjct: 286 VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH-----LYLY 340

Query: 519 KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQP 578
              G  +R++        G+ +            G  L F +   +             P
Sbjct: 341 DTTGRLIRQV------TKGEWEVTNFAGF--DPKGTRLYFESTEAS-------------P 379

Query: 579 YG-DLYVVKLDGSGLRRLT 596
                Y + + G   + LT
Sbjct: 380 LERHFYCIDIKGGKTKDLT 398

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	642
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.95
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.95
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.95
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.95
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.89
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.88
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.86
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.86
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.83
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.83
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.82
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.81
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.81
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.81
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.81
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.81
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.8
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.8
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.79
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.79
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.79
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.79
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.79
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.78
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.78
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.78
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.78
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.78
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.78
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.78
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.78
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.77
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.77
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.77
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.76
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.76
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.76
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.76
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.76
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.76
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.75
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.75
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.75
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.75
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.75
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.75
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.75
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.75
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.74
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.74
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.73
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.73
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.72
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.72
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.72
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.71
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.71
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.7
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.7
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.69
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.69
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.68
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.68
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.68
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.68
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.68
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.68
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.68
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.68
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.67
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.67
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.67
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.66
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.66
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.66
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.66
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.65
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.65
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.65
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.65
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.65
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.64
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.64
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.63
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.63
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.63
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.63
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.63
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.63
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.62
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.62
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.62
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.6
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.6
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.6
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.6
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.6
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.6
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.6
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.6
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.59
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.59
2pm7_B	297	Protein transport protein SEC13, protein transport	99.59
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.59
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.59
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.57
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.57
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.57
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.57
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.56
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.56
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.55
2pm7_B	297	Protein transport protein SEC13, protein transport	99.55
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.54
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.54
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.53
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.53
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.52
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.51
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.51
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.51
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.51
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.5
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.5
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.5
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.49
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.48
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.47
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.47
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.46
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.46
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.45
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.44
3jro_A	753	Fusion protein of protein transport protein SEC13	99.44
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.43
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.43
3jro_A	753	Fusion protein of protein transport protein SEC13	99.42
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.42
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.4
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.39
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.38
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.36
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.35
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.31
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.3
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.3
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.28
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.28
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.25
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.25
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.25
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.23
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.21
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.2
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.19
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.18
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.15
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.14
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.12
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.11
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.1
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.09
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.0
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.0
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.98
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.95
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.92
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.87
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.85
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.8
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.79
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.78
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.78
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.76
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.74
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.74
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.71
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.66
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.65
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.58
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.57
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.53
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.52
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.51
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.5
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.5
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.42
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.35
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.35
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.34
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.34
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.26
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.25
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.25
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.24
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.19
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.17
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.13
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.13
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.1
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.06
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.01
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.95
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.95
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.88
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.87
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.83
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.82
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.79
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.77
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.75
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	97.74
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.74
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.7
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.69
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.69
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.67
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.67
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.63
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.63
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.51
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.49
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.48
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.43
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.38
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.38
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.33
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.31
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.28
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.23
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.11
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	96.88
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.87
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.84
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.64
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.57
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.49
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.46
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.44
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.27
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.26
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.26
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.23
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.17
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.12
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.9
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.85
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.73
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.68
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.68
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.36
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.33
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.21
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.13
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.08
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.83
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.77
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.4
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.31
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.09
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	93.3
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.11
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.77
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	90.79
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	90.48
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	89.47
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.58
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	88.45
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	86.85
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.83
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.63
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	85.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	85.02
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	83.99
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.77
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	81.07
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	80.47

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.5e-35  Score=346.14  Aligned_cols=523  Identities=14%  Similarity=0.109  Sum_probs=348.6

Q ss_pred             cceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEcc---CCCcceEEEcCCCCc
Q 039497            4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISER---SGSPRIYQTRPGSSK   80 (642)
Q Consensus         4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~---~g~~~l~~~~~~g~~   80 (642)
                      ++.|+|+      +.++||++++.|     +++++||.|...+..|+|| |||++|||.+.+   ++..+||+++..+..
T Consensus        24 ~~~iaf~------~~~~l~~~~~~g-----g~~~~lt~~~~~v~~~~~S-PDG~~la~~s~~~~~~~~~~i~~~d~~~g~   91 (1045)
T 1k32_A           24 GDRIIFV------CCDDLWEHDLKS-----GSTRKIVSNLGVINNARFF-PDGRKIAIRVMRGSSLNTADLYFYNGENGE   91 (1045)
T ss_dssp             TTEEEEE------ETTEEEEEETTT-----CCEEEEECSSSEEEEEEEC-TTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             CCEEEEE------ECCcEEEEECCC-----CcEEEeeeCCCcccCeEEC-CCCCEEEEEEeeccCCCCCeEEEEECCCCC
Confidence            5789999      557999999999     9999999999999999999 999999999877   577789999766654


Q ss_pred             ccccCCCCCCc-----ccccccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcE
Q 039497           81 TELLPSIPCSL-----FHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF  153 (642)
Q Consensus        81 ~~~~~~~~~~~-----~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~  153 (642)
                      ...+.......     ....+.|  +|+ ++|+...+..   .....+||.+++.+++.++|+.....  ..+||| | .
T Consensus        92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~---~~~~~~l~~~~~~~g~~~~l~~~~~~--~~~~sp-G-~  163 (1045)
T 1k32_A           92 IKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQP---FSSMTCLYRVENDGINFVPLNLGPAT--HILFAD-G-R  163 (1045)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSS---STTCCEEEEEEGGGTEEEECCSCSCS--EEEEET-T-E
T ss_pred             eEEcccCCCcccccccccccccCCCCCE-EEEEECCcCC---CcccceEEEEECCCCCeEEecCCCcc--eeeeCC-C-E
Confidence            44554322111     0023344  555 8887764321   11123799999999999999876543  467999 8 6


Q ss_pred             EEEEecCC--CCCCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccc
Q 039497          154 IAVASYES--RPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFL  229 (642)
Q Consensus       154 la~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~  229 (642)
                      |+......  ..|..+.......||+.+.. ++.+++.....  ..+.|++| +++|+. ..++..+||.++..++    
T Consensus       164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~~~~~v~~~~~s~d-~l~~~~-~~dg~~~l~~~~~~g~----  236 (1045)
T 1k32_A          164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH-RIYFIT-DIDGFGQIYSTDLDGK----  236 (1045)
T ss_dssp             EEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT-EEEEEE-CTTSSCEEEEEETTSC----
T ss_pred             EEEeccCCCccccccccCCCcCCEEEECCC-CCeEECcCCCCcccceEEeCC-EEEEEE-eccCceEEEEEeCCCC----
Confidence            66654322  24555555567788887765 66677743333  36799999 777777 5678889999998876    


Q ss_pred             cCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec------CC------------CCcccCCeec-
Q 039497          230 GFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL------NP------------NFHHYNPFVS-  290 (642)
Q Consensus       230 ~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~------~~------------~~~~~~~~~s-  290 (642)
                          ...+++.+. ....++|||||++|++..      ...|++|++..      ..            ...+..+.|| 
T Consensus       237 ----~~~~l~~~~-~~~~~~~SpDG~~la~~~------~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~  305 (1045)
T 1k32_A          237 ----DLRKHTSFT-DYYPRHLNTDGRRILFSK------GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSP  305 (1045)
T ss_dssp             ----SCEECCCCC-SSCEEEEEESSSCEEEEE------TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEE
T ss_pred             ----cceEecCCC-CcceeeEcCCCCEEEEEe------CCEEEEecCCceEeeeeccCcccccccccccccccceeeecC
Confidence                567776654 344578999999999963      23788888611      01            1135678999 


Q ss_pred             CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee---CCCccEEcCCCCEEEEEecCCCceeEE-EEECCCCCe
Q 039497          291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL---NGSFPSFSPDGGLIVFNHDFELNAGIK-IAKSDGSKR  366 (642)
Q Consensus       291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~-~~d~~~~~~  366 (642)
                      |||++|++.. .+        .+++..+.... ...+...   ....+.|+ ||++|++.+.   ...|| ++++++++.
T Consensus       306 pdG~~la~~~-~~--------~i~~~~~~~~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~---~~~l~~~~d~~~~~~  371 (1045)
T 1k32_A          306 LDGDLIAFVS-RG--------QAFIQDVSGTY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTR---EGDFLGIYDYRTGKA  371 (1045)
T ss_dssp             CGGGCEEEEE-TT--------EEEEECTTSSB-EEECSCCSCEEEEEECSS-SEEEEEEEET---TEEEEEEEETTTCCE
T ss_pred             CCCCEEEEEE-cC--------EEEEEcCCCCc-eEEccCCCcceEEeeeEc-CCCeEEEEEC---CCceEEEEECCCCCc
Confidence            9999999985 11        22333333221 1111111   12356899 9999999875   57899 999998887


Q ss_pred             eEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc-ccCCCCccCcEEC
Q 039497          367 WTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT-KEETGNNAFPSCS  444 (642)
Q Consensus       367 ~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~S  444 (642)
                      ..+.. ...+..+.|||||++|++...       +..+++|++..         +     +...+. .+. ..+..++||
T Consensus       372 ~~l~~~~~~~~~~~~SpDG~~la~~~~-------~~~v~~~d~~t---------g-----~~~~~~~~~~-~~v~~~~~S  429 (1045)
T 1k32_A          372 EKFEENLGNVFAMGVDRNGKFAVVAND-------RFEIMTVDLET---------G-----KPTVIERSRE-AMITDFTIS  429 (1045)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEET-------TSEEEEEETTT---------C-----CEEEEEECSS-SCCCCEEEC
T ss_pred             eEecCCccceeeeEECCCCCEEEEECC-------CCeEEEEECCC---------C-----ceEEeccCCC-CCccceEEC
Confidence            77664 345778999999999998874       45777777643         3     444444 333 566789999


Q ss_pred             CCCCeEEEEeCCC-------CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC---------
Q 039497          445 PDGKFLVFRSGRS-------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD---------  508 (642)
Q Consensus       445 pDg~~l~~~~~~~-------g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~---------  508 (642)
                      |||++|++.+...       ....|++||+.+++    +..++.+......+.|+|||++|++.+.+....         
T Consensus       430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~  505 (1045)
T 1k32_A          430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  505 (1045)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             CCCCeEEEEecCccccccCCCCCeEEEEECCCCc----EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence            9999999987532       34689999999887    488887766677899999999999998754310         


Q ss_pred             -CCCceeEEEEeCCCCceEE------------------------eeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          509 -NVEAFSLYVIKPDGSGLRR------------------------IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       509 -~~~~~~l~~~d~~~~~~~~------------------------l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                       ......++.+-+.......                        .......+       .+..+.+||||+.++.....+
T Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~-------~~~~~~~s~dg~~~~~~~~~g  578 (1045)
T 1k32_A          506 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG-------DYRMIIPLESSILIYSVPVHG  578 (1045)
T ss_dssp             ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB-------CEEEEEECSSEEEEEECCCCC
T ss_pred             ccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCC-------ChhheEEcCCCeEEEEecccC
Confidence             0011223333322111100                        00001111       456789999997666422100


Q ss_pred             CcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeec
Q 039497          564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                      ...    +.-..+.....||.||+.+++.+.+.   ..+..++|||||++++...
T Consensus       579 ~~~----~~~~~~~~~~~l~~~d~~~~~~~~l~---~~v~~~~~S~DG~~l~~~~  626 (1045)
T 1k32_A          579 EFA----AYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRK  626 (1045)
T ss_dssp             SHH----HHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEE
T ss_pred             ccc----ccccccCCCceEEEEECCCCcEEEee---cCcceEEECCCCCEEEEEc
Confidence            000    00000001238999999998877776   2245779999999887654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=4.9e-32  Score=316.51  Aligned_cols=428  Identities=12%  Similarity=0.100  Sum_probs=303.5

Q ss_pred             cccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCee
Q 039497           94 DRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNT  173 (642)
Q Consensus        94 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~  173 (642)
                      ..|.++++.|+|.+..           +||++++.+++.++|+.+......|+|||||++|||.+....      ..+..
T Consensus        18 ~~~~~S~~~iaf~~~~-----------~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~------~~~~~   80 (1045)
T 1k32_A           18 LNPDIHGDRIIFVCCD-----------DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGS------SLNTA   80 (1045)
T ss_dssp             EEEEEETTEEEEEETT-----------EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEEST------TCCEE
T ss_pred             eCcEEeCCEEEEEECC-----------cEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeecc------CCCCC
Confidence            3566677899998863           699999999999999998888889999999999999876410      01467


Q ss_pred             eEEEEEecCCCceeEeecCC---------CcceEeeCCeEEEEEecCC----CceEEEEEecCCCcccccCCccceeeCC
Q 039497          174 DIVVFQESDPNKRVIVCERG---------GWPTWSGDSTIYFHRQADD----GWWSIFRVSFPENLEFLGFPIAPTRVTP  240 (642)
Q Consensus       174 ~l~~~~~~~g~~~~l~~~~~---------~~~~wspdg~~~~~~~~~~----g~~~l~~~~~~~~~~~~~~~~~~~~l~~  240 (642)
                      .||+|++.+++.++++....         ..++|||||+++|+.. .+    +...||.+++.++        ...+++.
T Consensus        81 ~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~-~~~~~~~~~~l~~~~~~~g--------~~~~l~~  151 (1045)
T 1k32_A           81 DLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD-AMQPFSSMTCLYRVENDGI--------NFVPLNL  151 (1045)
T ss_dssp             EEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC-TTSSSTTCCEEEEEEGGGT--------EEEECCS
T ss_pred             eEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEEC-CcCCCcccceEEEEECCCC--------CeEEecC
Confidence            89999999998888876443         2469999999777773 22    4568999999887        5566665


Q ss_pred             CCCccccceeecCCcEEEEEEec---------cCCceeeEEEEEe------ecCCCCcccCCeecCCCCEEEEEEeecCC
Q 039497          241 PGVHCFTPAAFHDGKRLAVATRR---------KNRNFRHIEIYDL------TLNPNFHHYNPFVSANSEFIGYHRFRGES  305 (642)
Q Consensus       241 ~~~~~~~~~~SpdG~~l~~~~~~---------~~~~~~~i~~~d~------~~~~~~~~~~~~~spDg~~l~~~~~~~~~  305 (642)
                      ..  ....+||| | .++.....         .+.....+|+.+.      ...+...+..+.|++|  .++|...... 
T Consensus       152 ~~--~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg-  224 (1045)
T 1k32_A          152 GP--ATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDG-  224 (1045)
T ss_dssp             CS--CSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTS-
T ss_pred             CC--cceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccC-
Confidence            53  34567999 8 55553311         1223345555432      2345566778899988  6777654322 


Q ss_pred             CCCCcccceEeeccCCC-ceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec------------
Q 039497          306 TEGQSTIPHLEPVASPV-KELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD------------  372 (642)
Q Consensus       306 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~------------  372 (642)
                          ...+|.....+.. ..+... .....+.|||||++|+|..    ...|+++++++.....+...            
T Consensus       225 ----~~~l~~~~~~g~~~~~l~~~-~~~~~~~~SpDG~~la~~~----~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~  295 (1045)
T 1k32_A          225 ----FGQIYSTDLDGKDLRKHTSF-TDYYPRHLNTDGRRILFSK----GGSIYIFNPDTEKIEKIEIGDLESPEDRIISI  295 (1045)
T ss_dssp             ----SCEEEEEETTSCSCEECCCC-CSSCEEEEEESSSCEEEEE----TTEEEEECTTTCCEEECCCCCCCBCCSEEEEC
T ss_pred             ----ceEEEEEeCCCCcceEecCC-CCcceeeEcCCCCEEEEEe----CCEEEEecCCceEeeeeccCcccccccccccc
Confidence                2455665554432 222111 1223568999999999975    36899999865554432221            


Q ss_pred             CCceeeeee-cCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC-CccCcEECCCCCeE
Q 039497          373 RTAFYNSWS-PTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSCSPDGKFL  450 (642)
Q Consensus       373 ~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~SpDg~~l  450 (642)
                      ..+..+.|| |||++|++..        ...+.++++..         +     ....+.... . .+..+.|| ||+.|
T Consensus       296 ~~v~~~~~S~pdG~~la~~~--------~~~i~~~~~~~---------~-----~~~~~~~~~-~~~~~~~~~s-dg~~l  351 (1045)
T 1k32_A          296 PSKFAEDFSPLDGDLIAFVS--------RGQAFIQDVSG---------T-----YVLKVPEPL-RIRYVRRGGD-TKVAF  351 (1045)
T ss_dssp             GGGGEEEEEECGGGCEEEEE--------TTEEEEECTTS---------S-----BEEECSCCS-CEEEEEECSS-SEEEE
T ss_pred             cccceeeecCCCCCEEEEEE--------cCEEEEEcCCC---------C-----ceEEccCCC-cceEEeeeEc-CCCeE
Confidence            147889999 9999999987        34555554422         3     455566555 4 67789999 99999


Q ss_pred             EEEeCCCCceeEE-EEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497          451 VFRSGRSGHKNLF-VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       451 ~~~~~~~g~~~l~-~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  529 (642)
                      ++.+.   ...|| ++++.+++.    +.++.+...+..++|||||++|++.+.+.        .|++||+++++.+.+.
T Consensus       352 ~~~s~---~~~l~~~~d~~~~~~----~~l~~~~~~~~~~~~SpDG~~la~~~~~~--------~v~~~d~~tg~~~~~~  416 (1045)
T 1k32_A          352 IHGTR---EGDFLGIYDYRTGKA----EKFEENLGNVFAMGVDRNGKFAVVANDRF--------EIMTVDLETGKPTVIE  416 (1045)
T ss_dssp             EEEET---TEEEEEEEETTTCCE----EECCCCCCSEEEEEECTTSSEEEEEETTS--------EEEEEETTTCCEEEEE
T ss_pred             EEEEC---CCceEEEEECCCCCc----eEecCCccceeeeEECCCCCEEEEECCCC--------eEEEEECCCCceEEec
Confidence            99886   45899 999998774    77775556678899999999999988764        3999999999888776


Q ss_pred             ecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497          530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP  609 (642)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~  609 (642)
                      .. ..+       .+..++|||||++|++.+.+....       ........|++|++.++++..++.+......++|||
T Consensus       417 ~~-~~~-------~v~~~~~SpDG~~la~~~~~~~~~-------~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~sp  481 (1045)
T 1k32_A          417 RS-REA-------MITDFTISDNSRFIAYGFPLKHGE-------TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA  481 (1045)
T ss_dssp             EC-SSS-------CCCCEEECTTSCEEEEEEEECSST-------TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECT
T ss_pred             cC-CCC-------CccceEECCCCCeEEEEecCcccc-------ccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcC
Confidence            42 333       457899999999999987653000       000012389999999988888988776677899999


Q ss_pred             CCceEEee
Q 039497          610 GNQLDLGK  617 (642)
Q Consensus       610 dg~~~~~~  617 (642)
                      ||++++..
T Consensus       482 dG~~l~~~  489 (1045)
T 1k32_A          482 DSKNLYYL  489 (1045)
T ss_dssp             TSCEEEEE
T ss_pred             CCCEEEEE
Confidence            99877544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.6e-30  Score=281.82  Aligned_cols=480  Identities=17%  Similarity=0.131  Sum_probs=324.4

Q ss_pred             eeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccc
Q 039497           18 GFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV   97 (642)
Q Consensus        18 ~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~   97 (642)
                      .+.|.+.++.|     .....+..|...+...+|+ |||++|+..+ .++...+|...  ....................
T Consensus        78 d~~i~vWd~~~-----~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~-~d~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~  148 (577)
T 2ymu_A           78 DKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFS-PDGQTIASAS-DDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFS  148 (577)
T ss_dssp             TSCEEEEETTS-----CEEEEECCCSSCEEEEEEC-TTSSEEEEEE-TTSCEEEEETT--CCEEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEEECCC-----CEEEEEECCCCCEEEEEEC-CCCCEEEEEc-CCCceeecccc--cceeeeccCCCCceeeeeee
Confidence            34566666777     7788999999999999999 9999999554 46777777641  11111111111111111112


Q ss_pred             cCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEE
Q 039497           98 ARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVV  177 (642)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~  177 (642)
                      .++..++......          .+........................++|||++|+....+.            .|.+
T Consensus       149 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------~v~~  206 (577)
T 2ymu_A          149 PDGQTIASASDDK----------TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK------------TVKL  206 (577)
T ss_dssp             TTSSCEEEEETTS----------EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS------------EEEE
T ss_pred             cCCccceeccccc----------ceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCC------------EEEE
Confidence            2444444433321          23333444444445555555556688999999999887665            6888


Q ss_pred             EEecCCCceeEeecCCC--cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCc
Q 039497          178 FQESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK  255 (642)
Q Consensus       178 ~~~~~g~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~  255 (642)
                      |+..+.....+......  .++|+||++.+++. ..++...+|  +..+.        ....+..+...+..++|+|||+
T Consensus       207 w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~~d~~i~~w--~~~~~--------~~~~~~~~~~~v~~v~~~~d~~  275 (577)
T 2ymu_A          207 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA-SDDKTVKLW--NRNGQ--------LLQTLTGHSSSVNGVAFRPDGQ  275 (577)
T ss_dssp             ECTTSCEEEEEECCSSCEEEEEECTTSSCEEEE-ETTSCEEEE--CTTSC--------EEEEECCCSSCEEEEEECTTSS
T ss_pred             EeCCCcEEEEEecCCCCEEEEEECCCCCEEEEE-eCCCEEEEE--eCCCC--------EEEEEecCCCCEEEEEEcCCCC
Confidence            88654333334333332  45999999877776 456755555  44443        4556666666778889999999


Q ss_pred             EEEEEEeccCCceeeEEEEEe-------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe
Q 039497          256 RLAVATRRKNRNFRHIEIYDL-------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML  328 (642)
Q Consensus       256 ~l~~~~~~~~~~~~~i~~~d~-------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (642)
                      .|+.....+     .+.+|+.       ...+...+...+++||++.|+....++.      ..+|  .+...  .+...
T Consensus       276 ~l~~~~~d~-----~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~------i~~w--~~~~~--~~~~~  340 (577)
T 2ymu_A          276 TIASASDDK-----TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT------VKLW--NRNGQ--HLQTL  340 (577)
T ss_dssp             EEEEEETTS-----CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC------EEEE--ETTSC--EEEEE
T ss_pred             EEEEEeCCC-----EEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCe------EEEE--eCCCC--eeEEE
Confidence            998865544     7888886       2344555667789999999988754443      2233  22222  11111


Q ss_pred             ee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497          329 RL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ  404 (642)
Q Consensus       329 ~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  404 (642)
                      ..   ......|+|||+.|+....   ...|.+++..+.....+.. ...+..+.|+|||+.|+..+.       ++.++
T Consensus       341 ~~~~~~v~~~~~s~~g~~l~~~~~---dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-------d~~v~  410 (577)
T 2ymu_A          341 TGHSSSVWGVAFSPDGQTIASASD---DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-------DKTVK  410 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEET-------TSEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEeC---CCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeC-------CCEEE
Confidence            11   1134689999999888654   3567788876655444443 566889999999999988874       67888


Q ss_pred             EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                      +|+...         .     ....+..+. ..+..++|+||+++|+..+.   +..|.+|+.. ++.   +..+..+..
T Consensus       411 ~~~~~~---------~-----~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~---d~~v~~w~~~-~~~---~~~~~~~~~  468 (577)
T 2ymu_A          411 LWNRNG---------Q-----LLQTLTGHS-SSVWGVAFSPDDQTIASASD---DKTVKLWNRN-GQL---LQTLTGHSS  468 (577)
T ss_dssp             EECTTC---------C-----EEEEEECCS-SCEEEEEECTTSSEEEEEET---TSEEEEEETT-SCE---EEEEECCSS
T ss_pred             EEeCCC---------C-----EEEEecCCC-CCeEEEEECCCCCEEEEEcC---CCEEEEEECC-CCE---EEEEcCCCC
Confidence            887422         2     455566555 67788999999999988774   3478899976 444   577777777


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      .+..++|+|||++|+..+.++.        |++||..+...+.+.  ++..       .+..++|||||++|+..+.++ 
T Consensus       469 ~v~~~~~spd~~~las~~~d~~--------i~iw~~~~~~~~~~~--~h~~-------~v~~l~~s~dg~~l~s~~~dg-  530 (577)
T 2ymu_A          469 SVRGVAFSPDGQTIASASDDKT--------VKLWNRNGQLLQTLT--GHSS-------SVRGVAFSPDGQTIASASDDK-  530 (577)
T ss_dssp             CEEEEEECTTSCEEEEEETTSE--------EEEEETTSCEEEEEE--CCSS-------CEEEEEECTTSSCEEEEETTS-
T ss_pred             CEEEEEEcCCCCEEEEEeCCCE--------EEEEcCCCCEEEEEe--CCCC-------CEEEEEEcCCCCEEEEEECcC-
Confidence            7888999999999998887654        899998765555443  3444       578899999999988777654 


Q ss_pred             cccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCC
Q 039497          565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~  620 (642)
                                      .|.+||..+..+..+..+...+..++|+|||++|++....
T Consensus       531 ----------------~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D  570 (577)
T 2ymu_A          531 ----------------TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD  570 (577)
T ss_dssp             ----------------EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             ----------------EEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence                            7888898887788888888888899999999999886543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.6e-29  Score=276.75  Aligned_cols=480  Identities=17%  Similarity=0.120  Sum_probs=326.4

Q ss_pred             eeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccc
Q 039497           18 GFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV   97 (642)
Q Consensus        18 ~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~   97 (642)
                      ++.|.+.+..|     ...++|.+|.+.+...+|| |||++||.. ..++...||..  .++....+.........-..+
T Consensus        37 d~~v~iWd~~~-----~~~~~l~gh~~~V~~l~fs-pdg~~las~-~~d~~i~vWd~--~~~~~~~~~~~~~~v~~~~~s  107 (577)
T 2ymu_A           37 DKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFS-PDGQTIASA-SDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFS  107 (577)
T ss_dssp             TSEEEEECTTS-----CEEEEEECCSSCEEEEEEC-TTSSEEEEE-ETTSCEEEEET--TSCEEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEEECCC-----CEEEEEeCCCCCEEEEEEC-CCCCEEEEE-eCCCEEEEEEC--CCCEEEEEECCCCCEEEEEEC
Confidence            34566666776     6788999999999999999 999999954 45788888874  343222222111111100122


Q ss_pred             cCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEE
Q 039497           98 ARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVV  177 (642)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~  177 (642)
                      .+++.|+......          .+...+........+...........++||++.++......            .+.+
T Consensus       108 ~d~~~l~~~~~d~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------------~~~~  165 (577)
T 2ymu_A          108 PDGQTIASASDDK----------TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK------------TVKL  165 (577)
T ss_dssp             TTSSEEEEEETTS----------CEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS------------EEEE
T ss_pred             CCCCEEEEEcCCC----------ceeecccccceeeeccCCCCceeeeeeecCCccceeccccc------------ceec
Confidence            2555665544332          34444666666666665555566788999999999877654            3445


Q ss_pred             EEecCCCceeEeecCCC--cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCc
Q 039497          178 FQESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK  255 (642)
Q Consensus       178 ~~~~~g~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~  255 (642)
                      +................  ...|+||+.++++. ..++..  ..++..+.        ....+..+...+..++|+|||+
T Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v--~~w~~~~~--------~~~~~~~~~~~v~~~~~s~dg~  234 (577)
T 2ymu_A          166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA-SDDKTV--KLWNRNGQ--------LLQTLTGHSSSVRGVAFSPDGQ  234 (577)
T ss_dssp             ECTTSCEEEEEECCSSCEEEEEECTTSSCEEEE-ETTSEE--EEECTTSC--------EEEEEECCSSCEEEEEECTTSS
T ss_pred             cccceeeeeeccCCCcceeeeeecCCCCEEEEE-cCCCEE--EEEeCCCc--------EEEEEecCCCCEEEEEECCCCC
Confidence            54433322222222222  35899999877776 456744  44455443        4556666666778889999999


Q ss_pred             EEEEEEeccCCceeeEEEEEe-------ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe
Q 039497          256 RLAVATRRKNRNFRHIEIYDL-------TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML  328 (642)
Q Consensus       256 ~l~~~~~~~~~~~~~i~~~d~-------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (642)
                      +|+.....+     .+.+||.       ...+...+....|+|||+.|+....++.      ..+|  .....  .+...
T Consensus       235 ~l~~~~~d~-----~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~------i~~w--~~~~~--~~~~~  299 (577)
T 2ymu_A          235 TIASASDDK-----TVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT------VKLW--NRNGQ--LLQTL  299 (577)
T ss_dssp             CEEEEETTS-----CEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC------EEEE--ETTSC--EEEEE
T ss_pred             EEEEEeCCC-----EEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCE------EEEE--eCCCc--EEEEE
Confidence            998865443     7888886       2344555667889999999888754433      2222  22222  11111


Q ss_pred             ee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497          329 RL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ  404 (642)
Q Consensus       329 ~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  404 (642)
                      ..   ......|+||++.|+....   ...|.++++++.....+.. ...+..+.|+|||+.|+....       ++.++
T Consensus       300 ~~h~~~v~~~~~~~~~~~l~t~~~---d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------dg~v~  369 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPDGQTIASASD---DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD-------DKTVK  369 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEE
T ss_pred             ecCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeC-------CCEEE
Confidence            11   1134689999999888664   3567788888776555543 556788999999999988774       67888


Q ss_pred             EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                      +|+...         .     ....+..+. ..+..++|+|||++|+..+.+   ..|.+|+.. ++.   +..+..+..
T Consensus       370 ~~~~~~---------~-----~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~d---~~v~~~~~~-~~~---~~~~~~~~~  427 (577)
T 2ymu_A          370 LWNRNG---------Q-----LLQTLTGHS-SSVRGVAFSPDGQTIASASDD---KTVKLWNRN-GQL---LQTLTGHSS  427 (577)
T ss_dssp             EEETTC---------C-----EEEEEECCS-SCEEEEEECTTSSCEEEEETT---SEEEEECTT-CCE---EEEEECCSS
T ss_pred             EEcCCC---------C-----EEEEecCCC-CCeEEEEECCCCCEEEEEeCC---CEEEEEeCC-CCE---EEEecCCCC
Confidence            887422         2     455555555 677889999999999887743   378889865 554   567777777


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      .+..++|+||+++|+..+.++.        |.+||+.+.....+.  .+..       .+..++|||||++|+..+.++ 
T Consensus       428 ~v~~~~~s~d~~~l~~~~~d~~--------v~~w~~~~~~~~~~~--~~~~-------~v~~~~~spd~~~las~~~d~-  489 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIASASDDKT--------VKLWNRNGQLLQTLT--GHSS-------SVRGVAFSPDGQTIASASDDK-  489 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSE--------EEEEETTSCEEEEEE--CCSS-------CEEEEEECTTSCEEEEEETTS-
T ss_pred             CeEEEEECCCCCEEEEEcCCCE--------EEEEECCCCEEEEEc--CCCC-------CEEEEEEcCCCCEEEEEeCCC-
Confidence            7888999999999998887654        899998766555544  3333       578899999999998777654 


Q ss_pred             cccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCC
Q 039497          565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~  620 (642)
                                      .|.+|+.++..+..+..+...+..++|||||++|++....
T Consensus       490 ----------------~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  529 (577)
T 2ymu_A          490 ----------------TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD  529 (577)
T ss_dssp             ----------------EEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             ----------------EEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc
Confidence                            7888898887788888887888899999999999876443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=5.2e-28  Score=266.12  Aligned_cols=510  Identities=11%  Similarity=0.046  Sum_probs=301.8

Q ss_pred             cceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCc-cc
Q 039497            4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSK-TE   82 (642)
Q Consensus         4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~-~~   82 (642)
                      |+.|++.      .+..|.+.++..    +.....|+.|...+...+|| |||++|| ++..+|..+||.+..+... ..
T Consensus        30 g~~l~~~------~~~~v~l~~~~~----~~~~~~~~~h~~~v~~~~~s-pdg~~la-sg~~d~~v~lWd~~~~~~~~~~   97 (611)
T 1nr0_A           30 GDKIQYC------NGTSVYTVPVGS----LTDTEIYTEHSHQTTVAKTS-PSGYYCA-SGDVHGNVRIWDTTQTTHILKT   97 (611)
T ss_dssp             SSEEEEE------ETTEEEEEETTC----SSCCEEECCCSSCEEEEEEC-TTSSEEE-EEETTSEEEEEESSSTTCCEEE
T ss_pred             CCEEEeC------CCCEEEEecCCC----cccCeEecCCCCceEEEEEC-CCCcEEE-EEeCCCCEEEeECCCCcceeeE
Confidence            5577776      334666666643    15677889999999999999 9999999 5556899999987322211 11


Q ss_pred             ccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcE-EEEEecCC
Q 039497           83 LLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF-IAVASYES  161 (642)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~-la~~~~~~  161 (642)
                      .+.........-..+.+++.|+........      .+.++..+. +.....+..+.......+|+|||++ ||..+.+.
T Consensus        98 ~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~------~~~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~  170 (611)
T 1nr0_A           98 TIPVFSGPVKDISWDSESKRIAAVGEGRER------FGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN  170 (611)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSC------SEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred             eecccCCceEEEEECCCCCEEEEEECCCCc------eeEEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEeCCC
Confidence            111111111101122356666655543211      124665553 2334455556656677899999984 78777666


Q ss_pred             CCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceee
Q 039497          162 RPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV  238 (642)
Q Consensus       162 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l  238 (642)
                                  .|.+|+...++.......+..   .++|+|||+++++. ..++...||  +..++.       ....+
T Consensus       171 ------------~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~-s~D~~i~lw--d~~~g~-------~~~~~  228 (611)
T 1nr0_A          171 ------------TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST-GGDGTIVLY--NGVDGT-------KTGVF  228 (611)
T ss_dssp             ------------CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEE--ETTTCC-------EEEEC
T ss_pred             ------------eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE-ECCCcEEEE--ECCCCc-------Eeeee
Confidence                        688899777654444333332   45999999988887 567855555  555542       22233


Q ss_pred             C-------CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCC---------CcccCCeecCCCCEEEEEEee
Q 039497          239 T-------PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN---------FHHYNPFVSANSEFIGYHRFR  302 (642)
Q Consensus       239 ~-------~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~---------~~~~~~~~spDg~~l~~~~~~  302 (642)
                      .       .+...+..++|+|||++|+....++     .+++||+.....         ..........+++.++....+
T Consensus       229 ~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-----~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  303 (611)
T 1nr0_A          229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN  303 (611)
T ss_dssp             BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccCCCEEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence            1       4555678899999999999866554     899999832210         000011112255555555433


Q ss_pred             cCCCCCCcccceEeeccCCCceeEEeee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCce
Q 039497          303 GESTEGQSTIPHLEPVASPVKELRMLRL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAF  376 (642)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~  376 (642)
                      +.      ..+|  ...... .......   .....+|+|||++|+..+.   ...|.++|+.+++......   ...+.
T Consensus       304 ~~------i~~~--~~~~~~-~~~~~~gh~~~v~~l~~spdg~~l~s~s~---D~~v~~Wd~~~~~~~~~~~~~h~~~v~  371 (611)
T 1nr0_A          304 GF------INFV--NPELGS-IDQVRYGHNKAITALSSSADGKTLFSADA---EGHINSWDISTGISNRVFPDVHATMIT  371 (611)
T ss_dssp             CC------EEEE--ETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEECSSCSCSSCEE
T ss_pred             Cc------EEEE--eCCCCC-cceEEcCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCceeeecccCCcceEE
Confidence            32      2222  221111 1111111   1135689999999887664   3578888988876544431   34566


Q ss_pred             eeeeecCCCEEEEEEcCCCcccCCCeEEEEEE-------------EeecCCC-----CCCCCCcc------------ccc
Q 039497          377 YNSWSPTEKHVIYTSTGPIFQSERATVQIARV-------------SFQLDPS-----DDNNREEI------------PCD  426 (642)
Q Consensus       377 ~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~-----~~~~~~~~------------~~~  426 (642)
                      .+.|++++. |+..+.       +..+++|++             ..  ...     ..+++..+            ...
T Consensus       372 ~~~~s~~~~-l~s~s~-------d~~v~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~  441 (611)
T 1nr0_A          372 GIKTTSKGD-LFTVSW-------DDHLKVVPAGGSGVDSSKAVANKL--SSQPLGLAVSADGDIAVAACYKHIAIYSHGK  441 (611)
T ss_dssp             EEEECTTSC-EEEEET-------TTEEEEECSSSSSSCTTSCCEEEC--SSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred             EEEECCCCc-EEEEEc-------CCceEEeecCCccccccceeeeec--CCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence            777777664 444432       333444431             00  000     00000000            001


Q ss_pred             eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCC
Q 039497          427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN  506 (642)
Q Consensus       427 ~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~  506 (642)
                      ...+. .. ..+..++|||||++|+..+.+   ..|.+|++.+++. ..... ..+...+..++|||||++|+..+.+..
T Consensus       442 ~~~~~-~~-~~v~~va~spdg~~lasgs~D---~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~  514 (611)
T 1nr0_A          442 LTEVP-IS-YNSSCVALSNDKQFVAVGGQD---SKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRK  514 (611)
T ss_dssp             EEEEE-CS-SCEEEEEECTTSCEEEEEETT---SEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeeee-cC-CCceEEEEeCCCCEEEEeCCC---CeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCC
Confidence            11111 12 345678999999999888743   3788888876652 00122 335566788999999999998887765


Q ss_pred             CCCCCceeEEEEeCCC-CceEEe-eecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497          507 PDNVEAFSLYVIKPDG-SGLRRI-HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV  584 (642)
Q Consensus       507 ~~~~~~~~l~~~d~~~-~~~~~l-~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  584 (642)
                              |.+|++.+ ++.... ....+..       .+..++|||||++|+..+.++                 .|.+
T Consensus       515 --------v~~w~~~~~~~~~~~~~~~~H~~-------~V~~v~fspdg~~lasgs~D~-----------------~v~l  562 (611)
T 1nr0_A          515 --------VIPYSVANNFELAHTNSWTFHTA-------KVACVSWSPDNVRLATGSLDN-----------------SVIV  562 (611)
T ss_dssp             --------EEEEEGGGTTEESCCCCCCCCSS-------CEEEEEECTTSSEEEEEETTS-----------------CEEE
T ss_pred             --------EEEEEcCCCCceeeeeeeeeccc-------ceeEEEECCCCCEEEEEECCC-----------------cEEE
Confidence                    99999976 333221 1111333       678999999999999887665                 6778


Q ss_pred             EEcCCCc--e-eeccCC-CCCCCCcEEecCCceEEeecCCC
Q 039497          585 VKLDGSG--L-RRLTWN-GYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       585 ~~~~~~~--~-~~lt~~-~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      |+++.+.  + ..+..+ ...+..++|+||++ +++....+
T Consensus       563 W~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~  602 (611)
T 1nr0_A          563 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDS  602 (611)
T ss_dssp             EETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTS
T ss_pred             EECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCC
Confidence            8887654  3 445555 56678999999999 76655443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=5.3e-27  Score=280.00  Aligned_cols=500  Identities=13%  Similarity=0.060  Sum_probs=317.8

Q ss_pred             eeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccc
Q 039497           18 GFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV   97 (642)
Q Consensus        18 ~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~   97 (642)
                      .+.|.+.+...    +.....+..|...+...+|| |||++||.. ..+|...||.+..+. ....+.........-...
T Consensus       636 d~~i~vw~~~~----~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~-~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~  708 (1249)
T 3sfz_A          636 DKTLQVFKAET----GEKLLDIKAHEDEVLCCAFS-SDDSYIATC-SADKKVKIWDSATGK-LVHTYDEHSEQVNCCHFT  708 (1249)
T ss_dssp             TSCEEEEETTT----CCEEEEECCCSSCEEEEEEC-TTSSEEEEE-ETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEC
T ss_pred             CCeEEEEECCC----CCEEEEeccCCCCEEEEEEe-cCCCEEEEE-eCCCeEEEEECCCCc-eEEEEcCCCCcEEEEEEe
Confidence            45677766654    14467888999999999999 999999854 457888888873322 111111111100000111


Q ss_pred             cC-CCEEEEEEeccCCCcccccccceEEEEccCCceE-ecccCCCccCCceeCCCCcEEEEEecCCC--CCCCCCC----
Q 039497           98 AR-NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFT-RLTPYGVVDYSPSVSYSGKFIAVASYESR--PWPGEFH----  169 (642)
Q Consensus        98 ~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~--~~~~~~~----  169 (642)
                      .+ +..++++...+         +.|..+++.+++.. .+..+.......+|||||++|+....++.  +|.....    
T Consensus       709 ~~~~~~~l~sg~~d---------~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~  779 (1249)
T 3sfz_A          709 NKSNHLLLATGSND---------FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK  779 (1249)
T ss_dssp             SSSSCCEEEEEETT---------SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred             cCCCceEEEEEeCC---------CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccc
Confidence            12 33344444433         14666688877644 45555555677899999999998876651  1110000    


Q ss_pred             ------------------------------------CCeeeEEEEEecCCCceeEee-cCC---CcceEeeCCeEEEEEe
Q 039497          170 ------------------------------------ELNTDIVVFQESDPNKRVIVC-ERG---GWPTWSGDSTIYFHRQ  209 (642)
Q Consensus       170 ------------------------------------~~~~~l~~~~~~~g~~~~l~~-~~~---~~~~wspdg~~~~~~~  209 (642)
                                                          .....+++|++.++....... .+.   ..++|+|++.++++. 
T Consensus       780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-  858 (1249)
T 3sfz_A          780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA-  858 (1249)
T ss_dssp             EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEE-
T ss_pred             eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEE-
Confidence                                                001123333333333222221 111   134677777766666 


Q ss_pred             cCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec-----------
Q 039497          210 ADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL-----------  278 (642)
Q Consensus       210 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~-----------  278 (642)
                      ..+|.  |..++..++.       ....+..+...+..++|+|||++|+....++     .+.+|++..           
T Consensus       859 ~~dg~--v~vwd~~~~~-------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg-----~v~vw~~~~~~~~~~~~~~~  924 (1249)
T 3sfz_A          859 LSQYC--VELWNIDSRL-------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQ-----TIRVWETKKVCKNSAIVLKQ  924 (1249)
T ss_dssp             CSSSC--EEEEETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEHHHHHSCCSSSEEE
T ss_pred             eCCCe--EEEEEcCCCc-------eeeecCCCccceEEEEECCCCCEEEEEeCCC-----eEEEEEccccceeeeecccc
Confidence            44554  4444555553       4455666666788899999999998866544     788888521           


Q ss_pred             ----------------------------------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce
Q 039497          279 ----------------------------------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE  324 (642)
Q Consensus       279 ----------------------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (642)
                                                        .....+....++|+|+.+++...++.      .  .+..+......
T Consensus       925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~------i--~i~d~~~~~~~  996 (1249)
T 3sfz_A          925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA------I--KIIELPNNRVF  996 (1249)
T ss_dssp             EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC------C--EEEETTTTSCE
T ss_pred             eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC------E--EEEEcCCCcee
Confidence                                              01223455689999999888765443      2  22232222111


Q ss_pred             eEE--eeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497          325 LRM--LRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERA  401 (642)
Q Consensus       325 ~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  401 (642)
                      ...  .......+.|+|||++|+..+.   ...|.++++.+++...+.. ...+..+.|+|+++ ++..+.       ++
T Consensus       997 ~~~~~h~~~v~~l~~s~dg~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-------dg 1065 (1249)
T 3sfz_A          997 SSGVGHKKAVRHIQFTADGKTLISSSE---DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-LLSWSF-------DG 1065 (1249)
T ss_dssp             EECCCCSSCCCCEEECSSSSCEEEECS---SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSE-EEEEES-------SS
T ss_pred             eecccCCCceEEEEECCCCCEEEEEcC---CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCc-EEEEEC-------CC
Confidence            111  1122356789999998887654   4678889998887554433 56788899999876 444442       67


Q ss_pred             eEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497          402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD  481 (642)
Q Consensus       402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~  481 (642)
                      .+++|++..        +.     ....+..+. ..+..++|||||++|+..+.   +..|.+|++.+++.   +..+..
T Consensus      1066 ~v~vwd~~~--------~~-----~~~~~~~~~-~~v~~~~~s~d~~~l~s~s~---d~~v~iwd~~~~~~---~~~l~~ 1125 (1249)
T 3sfz_A         1066 TVKVWNVIT--------GR-----IERDFTCHQ-GTVLSCAISSDATKFSSTSA---DKTAKIWSFDLLSP---LHELKG 1125 (1249)
T ss_dssp             EEEEEETTT--------TC-----CCEEEECCS-SCCCCEEECSSSSSCEEECC---SSCCCEECSSSSSC---SBCCCC
T ss_pred             cEEEEECCC--------Cc-----eeEEEcccC-CcEEEEEECCCCCEEEEEcC---CCcEEEEECCCcce---eeeecc
Confidence            899998855        22     455565555 67888999999999987764   33788899988876   566777


Q ss_pred             CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee--------cCCCCCCCcccccccceEEcCCC
Q 039497          482 GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV--------AGPEGSGDVDRERINHVCFSADG  553 (642)
Q Consensus       482 ~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~S~Dg  553 (642)
                      +...+..++|||||++|+..+.++.        |++||+.+++......        ..+.+       .+..+.|||||
T Consensus      1126 h~~~v~~~~~s~dg~~lat~~~dg~--------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~l~fs~dg 1190 (1249)
T 3sfz_A         1126 HNGCVRCSAFSLDGILLATGDDNGE--------IRIWNVSDGQLLHSCAPISVEEGTATHGG-------WVTDVCFSPDS 1190 (1249)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSC--------CCEEESSSSCCCCCCCCCC-------CCS-------CCCEEEECTTS
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCE--------EEEEECCCCceEEEeccccccccccccCc-------eEEEEEECCCC
Confidence            7777888999999999999887765        8999998776533210        11222       57889999999


Q ss_pred             CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-eeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      ++|+..+  +                 .|.+|++.+++. ..+..+...+..++|||||+++++....|
T Consensus      1191 ~~l~s~~--g-----------------~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg 1240 (1249)
T 3sfz_A         1191 KTLVSAG--G-----------------YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLG 1240 (1249)
T ss_dssp             SCEEEES--S-----------------SEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTC
T ss_pred             CEEEECC--C-----------------eEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCc
Confidence            9987654  2                 688889887663 44444566678999999999998865554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.96  E-value=1.1e-26  Score=240.72  Aligned_cols=326  Identities=14%  Similarity=0.115  Sum_probs=218.4

Q ss_pred             eeeeEEEecCCCCCCCCCceeeecCCceeeee-----ceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCc
Q 039497           17 YGFDVFSIKSPFVNAPKFHEHRLTDGTSINFN-----AQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSL   91 (642)
Q Consensus        17 ~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~-----~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~   91 (642)
                      .+..+|+.+..|     +..++||.+......     |+|| |||++|||.+.++|..                      
T Consensus         9 ~~~~~~~~~~~g-----~~~~~lt~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~----------------------   60 (388)
T 3pe7_A            9 LTFDTYQDASTG-----AQVTRLTPPDVTCHRNYFYQKCFT-RDGSKLLFGGAFDGPW----------------------   60 (388)
T ss_dssp             CCCEEEECTTTC-----CEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSC----------------------
T ss_pred             ccceEEecCCCC-----cceEEecCCcccccchhhcCccCC-CCCCEEEEEEcCCCCc----------------------
Confidence            467999999998     999999998877666     9999 9999999988655543                      


Q ss_pred             cccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCcc-CCceeCCCCcEEEEEecCCCCCCCCCCC
Q 039497           92 FHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVD-YSPSVSYSGKFIAVASYESRPWPGEFHE  170 (642)
Q Consensus        92 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~-~~~~~SPDG~~la~~~~~~~~~~~~~~~  170 (642)
                                                   +||.+++.+++.++++...... ..+.|||||++|||...+.         
T Consensus        61 -----------------------------~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~---------  102 (388)
T 3pe7_A           61 -----------------------------NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR---------  102 (388)
T ss_dssp             -----------------------------EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT---------
T ss_pred             -----------------------------eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC---------
Confidence                                         3555677777788887665544 3689999999999998554         


Q ss_pred             CeeeEEEEEecCCCceeEeecCCCc---ceE--eeCCeEEEEEe--c-----------------CCCceEEEEEecCCCc
Q 039497          171 LNTDIVVFQESDPNKRVIVCERGGW---PTW--SGDSTIYFHRQ--A-----------------DDGWWSIFRVSFPENL  226 (642)
Q Consensus       171 ~~~~l~~~~~~~g~~~~l~~~~~~~---~~w--spdg~~~~~~~--~-----------------~~g~~~l~~~~~~~~~  226 (642)
                         .|+++++.+++.+.+.......   ..|  +||+++++...  .                 ......|+.+++.++ 
T Consensus       103 ---~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-  178 (388)
T 3pe7_A          103 ---NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-  178 (388)
T ss_dssp             ---EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-
T ss_pred             ---eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-
Confidence               7999999999988887654432   234  79997665321  0                 122358999999988 


Q ss_pred             ccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccC-CceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecC
Q 039497          227 EFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKN-RNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGE  304 (642)
Q Consensus       227 ~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~  304 (642)
                             +.+.++.....+..++||| ||++|+|+..... .....|+++|+....                        
T Consensus       179 -------~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------------------------  227 (388)
T 3pe7_A          179 -------ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN------------------------  227 (388)
T ss_dssp             -------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC------------------------
T ss_pred             -------ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc------------------------
Confidence                   6677766555567788999 9999998765321 112355555441100                        


Q ss_pred             CCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce--eEEEEECCCCCeeEEeecCC-------c
Q 039497          305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA--GIKIAKSDGSKRWTLIKDRT-------A  375 (642)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~--~l~~~d~~~~~~~~l~~~~~-------~  375 (642)
                             .   ..+......     .....+.|||||++|+|.....+..  .|+++|+++++.+.+.....       .
T Consensus       228 -------~---~~l~~~~~~-----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~  292 (388)
T 3pe7_A          228 -------M---RKVKTHAEG-----ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNY  292 (388)
T ss_dssp             -------C---EESCCCCTT-----EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECT
T ss_pred             -------e---EEeeeCCCC-----cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecC
Confidence                   0   000000000     0012468999999999977644444  49999999998777755222       3


Q ss_pred             eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC-----------CccCcEEC
Q 039497          376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-----------NNAFPSCS  444 (642)
Q Consensus       376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~S  444 (642)
                      ....|||||+.|++...............|+.++.  +     ++     ..+.++... .           ....++||
T Consensus       293 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~--~-----~~-----~~~~l~~~~-~~~~~~~~~~~~~~~~~~~s  359 (388)
T 3pe7_A          293 DGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM--K-----NG-----TQHRVARHD-TSWKVFEGDRQVTHPHPSFT  359 (388)
T ss_dssp             TSSEEEEEECCC------------CCCCEEEEEET--T-----TT-----EEEEEEECC-CCCCCBTTBSSTTCCCCEEC
T ss_pred             CCCeEccCCCcceeEeeeccccccCCCCEEEEEec--c-----CC-----ceEEecccc-CcccccccccccCCCCccCC
Confidence            34579999999998652100000023334555554  2     33     566676654 3           46778999


Q ss_pred             CCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497          445 PDGKFLVFRSGRSGHKNLFVLDAVNGE  471 (642)
Q Consensus       445 pDg~~l~~~~~~~g~~~l~~~d~~~g~  471 (642)
                      |||++|+|.+.+.+..+||++++..+.
T Consensus       360 pDg~~l~~~s~~~g~~~l~~~~l~~~~  386 (388)
T 3pe7_A          360 PDDKQILFTSDVHGKPALYLATLPESV  386 (388)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEECCGGG
T ss_pred             CCCCEEEEEecCCCceeEEEEECChhc
Confidence            999999999999899999999987543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.95  E-value=3.9e-25  Score=243.23  Aligned_cols=469  Identities=12%  Similarity=0.042  Sum_probs=275.6

Q ss_pred             ceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccce
Q 039497           43 TSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSAL  122 (642)
Q Consensus        43 ~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  122 (642)
                      .+......|| |||++||+.+  ++...||.+. .+.....+.........-..+.+|+.|+- ...+.         .|
T Consensus        18 ~g~~~~~~~s-pdg~~l~~~~--~~~v~l~~~~-~~~~~~~~~~h~~~v~~~~~spdg~~las-g~~d~---------~v   83 (611)
T 1nr0_A           18 RGTAVVLGNT-PAGDKIQYCN--GTSVYTVPVG-SLTDTEIYTEHSHQTTVAKTSPSGYYCAS-GDVHG---------NV   83 (611)
T ss_dssp             TTCCCCCEEC-TTSSEEEEEE--TTEEEEEETT-CSSCCEEECCCSSCEEEEEECTTSSEEEE-EETTS---------EE
T ss_pred             cCceeEEeeC-CCCCEEEeCC--CCEEEEecCC-CcccCeEecCCCCceEEEEECCCCcEEEE-EeCCC---------CE
Confidence            4445567799 9999999876  3456677652 22222222211111111112224554544 43321         34


Q ss_pred             EEEEccCCce---EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---Ccc
Q 039497          123 YSTDLKASKF---TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWP  196 (642)
Q Consensus       123 ~~~~~~~~~~---~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~  196 (642)
                      .+.++.+++.   ..+..+.......+|||||++||....+.        .....|++|+.  ++.......+.   ..+
T Consensus        84 ~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~--------~~~~~v~~wd~--~~~~~~l~gh~~~v~~v  153 (611)
T 1nr0_A           84 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR--------ERFGHVFLFDT--GTSNGNLTGQARAMNSV  153 (611)
T ss_dssp             EEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS--------SCSEEEEETTT--CCBCBCCCCCSSCEEEE
T ss_pred             EEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCC--------CceeEEEEeeC--CCCcceecCCCCCceEE
Confidence            4447654332   23444555567789999999999876543        01246777763  33222222222   246


Q ss_pred             eEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          197 TWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       197 ~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      +|+|++. ++++. ..++...||.  ..++.       ....+..+...+..++|+|||++|+....++     .+++||
T Consensus       154 ~f~p~~~~~l~s~-s~D~~v~lwd--~~~~~-------~~~~l~~H~~~V~~v~fspdg~~las~s~D~-----~i~lwd  218 (611)
T 1nr0_A          154 DFKPSRPFRIISG-SDDNTVAIFE--GPPFK-------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDG-----TIVLYN  218 (611)
T ss_dssp             EECSSSSCEEEEE-ETTSCEEEEE--TTTBE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred             EECCCCCeEEEEE-eCCCeEEEEE--CCCCe-------EeeeeccccCceEEEEECCCCCEEEEEECCC-----cEEEEE
Confidence            9999996 45555 5678666664  44442       3445666766788899999999999866554     899999


Q ss_pred             eec---------------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeC----CCccE
Q 039497          276 LTL---------------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLN----GSFPS  336 (642)
Q Consensus       276 ~~~---------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  336 (642)
                      +..               .+...+...+|+|||+.|+....++.      ..+|-  +... ..+......    .....
T Consensus       219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~------v~lWd--~~~~-~~~~~~~~~~~~~~~~~~  289 (611)
T 1nr0_A          219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT------IKIWN--VATL-KVEKTIPVGTRIEDQQLG  289 (611)
T ss_dssp             TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE------EEEEE--TTTT-EEEEEEECCSSGGGCEEE
T ss_pred             CCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe------EEEEe--CCCC-ceeeeecCCCCccceeEE
Confidence            621               34555677899999999988765443      33332  2211 111111111    01112


Q ss_pred             EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      ...+++.++....   ...+.+++...++......  ...+..++|+|||+.|+..+.       ++.+++|++..    
T Consensus       290 ~~~~~~~l~s~s~---d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~-------D~~v~~Wd~~~----  355 (611)
T 1nr0_A          290 IIWTKQALVSISA---NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA-------EGHINSWDIST----  355 (611)
T ss_dssp             EEECSSCEEEEET---TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTT----
T ss_pred             EEEcCCEEEEEeC---CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC-------CCcEEEEECCC----
Confidence            2236676766554   3567778887776444333  556889999999999988874       68899998754    


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccc--------------------
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG--------------------  474 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~--------------------  474 (642)
                          +.     ....+.......+..+.|+++++ |+..+.+   ..+.+|+..++....                    
T Consensus       356 ----~~-----~~~~~~~~h~~~v~~~~~s~~~~-l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  422 (611)
T 1nr0_A          356 ----GI-----SNRVFPDVHATMITGIKTTSKGD-LFTVSWD---DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD  422 (611)
T ss_dssp             ----CC-----EEECSSCSCSSCEEEEEECTTSC-EEEEETT---TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTT
T ss_pred             ----Cc-----eeeecccCCcceEEEEEECCCCc-EEEEEcC---CceEEeecCCccccccceeeeecCCCCcEEEEeCC
Confidence                11     11211111113444556665543 3333321   134444433221100                    


Q ss_pred             ------------------ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCC
Q 039497          475 ------------------DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGS  536 (642)
Q Consensus       475 ------------------~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~  536 (642)
                                        .+..+. ....+..++|||||++|+..+.++.        |++||+.++....+....+.. 
T Consensus       423 g~~~~~~~~~~v~~~~~~~~~~~~-~~~~v~~va~spdg~~lasgs~D~~--------v~lwd~~~~~~~~~~~~~h~~-  492 (611)
T 1nr0_A          423 GDIAVAACYKHIAIYSHGKLTEVP-ISYNSSCVALSNDKQFVAVGGQDSK--------VHVYKLSGASVSEVKTIVHPA-  492 (611)
T ss_dssp             SSCEEEEESSEEEEEETTEEEEEE-CSSCEEEEEECTTSCEEEEEETTSE--------EEEEEEETTEEEEEEEEECSS-
T ss_pred             CcEEEEEeCceEEEEeCCceeeee-cCCCceEEEEeCCCCEEEEeCCCCe--------EEEEEccCCceeeeeccCCCC-
Confidence                              012221 2234567899999999998887764        899999877654333333444 


Q ss_pred             CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC-Cceee---ccCCCCCCCCcEEecCCc
Q 039497          537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG-SGLRR---LTWNGYENGTPAWHPGNQ  612 (642)
Q Consensus       537 ~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~---lt~~~~~~~~~~~s~dg~  612 (642)
                            .+..++|||||++|+..+.++                 .|.+|++.. +++..   +..+...+..++|||||+
T Consensus       493 ------~v~~v~fspdg~~las~s~d~-----------------~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~  549 (611)
T 1nr0_A          493 ------EITSVAFSNNGAFLVATDQSR-----------------KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV  549 (611)
T ss_dssp             ------CEEEEEECTTSSEEEEEETTS-----------------CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred             ------ceEEEEECCCCCEEEEEcCCC-----------------CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC
Confidence                  678999999999998877654                 678888875 44332   222556678999999999


Q ss_pred             eEEeecC
Q 039497          613 LDLGKLR  619 (642)
Q Consensus       613 ~~~~~~~  619 (642)
                      +|++...
T Consensus       550 ~lasgs~  556 (611)
T 1nr0_A          550 RLATGSL  556 (611)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9987543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.95  E-value=4e-26  Score=237.04  Aligned_cols=367  Identities=15%  Similarity=0.156  Sum_probs=232.1

Q ss_pred             CCCcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCcee-----eeeceecCCCCCeEEEEEccCCCcceEEEc
Q 039497            1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSI-----NFNAQFVDGQDQTIAFISERSGSPRIYQTR   75 (642)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~-----~~~~~~S~pDG~~laf~~~~~g~~~l~~~~   75 (642)
                      |+.|......      +  ..|+.+..|     ...++||.+...     ...|+|| |||++|||....+|..+     
T Consensus         1 ~~~~~~~~~~------~--~~~~d~~~g-----~~~~~l~~~~~~~~~~~~~~~~~S-pdG~~l~~~~~~~g~~~-----   61 (396)
T 3c5m_A            1 MAKGDVITLN------F--ETFVDSDTQ-----VKVTRLTPTDIICHRNYFYQKCFT-QDGKKLLFAGDFDGNRN-----   61 (396)
T ss_dssp             -CTTCEEECC------E--EEEECTTTC-----CEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCE-----
T ss_pred             CCcccccchh------h--heeecCCCC-----cceEEEecCCCCccceeeecCcCC-CCCCEEEEEEecCCCce-----
Confidence            6667766655      4  789988887     788999977554     6789999 99999999876544433     


Q ss_pred             CCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccC-CceeCCCCcEE
Q 039497           76 PGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDY-SPSVSYSGKFI  154 (642)
Q Consensus        76 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~-~~~~SPDG~~l  154 (642)
                                                                    ||++++.+++.++++....... .+.|||||++|
T Consensus        62 ----------------------------------------------l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l   95 (396)
T 3c5m_A           62 ----------------------------------------------YYLLNLETQQAVQLTEGKGDNTFGGFISTDERAF   95 (396)
T ss_dssp             ----------------------------------------------EEEEETTTTEEEECCCSSCBCTTTCEECTTSSEE
T ss_pred             ----------------------------------------------EEEEECCCCcEEEeecCCCCccccceECCCCCEE
Confidence                                                          5555666667777766554433 38899999999


Q ss_pred             EEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCcc
Q 039497          155 AVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIA  234 (642)
Q Consensus       155 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~  234 (642)
                      ||.....            .||++++.+++.++++....   .                                     
T Consensus        96 ~~~~~~~------------~l~~~d~~~~~~~~~~~~~~---~-------------------------------------  123 (396)
T 3c5m_A           96 FYVKNEL------------NLMKVDLETLEEQVIYTVDE---E-------------------------------------  123 (396)
T ss_dssp             EEEETTT------------EEEEEETTTCCEEEEEECCT---T-------------------------------------
T ss_pred             EEEEcCC------------cEEEEECCCCCcEEEEeccc---c-------------------------------------
Confidence            9987544            57777777766555543111   1                                     


Q ss_pred             ceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccce
Q 039497          235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH  314 (642)
Q Consensus       235 ~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~  314 (642)
                                     |+|+|++|++.....     ...+                                         
T Consensus       124 ---------------~~~~g~~l~~~~~~~-----~~~~-----------------------------------------  142 (396)
T 3c5m_A          124 ---------------WKGYGTWVANSDCTK-----LVGI-----------------------------------------  142 (396)
T ss_dssp             ---------------EEEEEEEEECTTSSE-----EEEE-----------------------------------------
T ss_pred             ---------------cCCCCCEEEeccCCc-----cccc-----------------------------------------
Confidence                           344444444411000     0000                                         


Q ss_pred             EeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe--cCCCceeEEEEECCCCCeeEEee-cCCceeeeeec-CCCEEEEE
Q 039497          315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH--DFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSP-TEKHVIYT  390 (642)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~sp-dg~~l~~~  390 (642)
                                 ..     ..+.|+|||+.+++..  .......|+++++++++.+.+.. ...+..+.|+| ||++|+|+
T Consensus       143 -----------~~-----~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~  206 (396)
T 3c5m_A          143 -----------EI-----LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFC  206 (396)
T ss_dssp             -----------EE-----EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEE
T ss_pred             -----------cc-----cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEE
Confidence                       00     0234566666665532  11345688999998888777665 45577899999 89999998


Q ss_pred             EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCcee--EEEEEC
Q 039497          391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKN--LFVLDA  467 (642)
Q Consensus       391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~--l~~~d~  467 (642)
                      ....   .......||.++.  +     ++     ..+.+.... ...+..+.|||||++|+|.+...+...  |+++|+
T Consensus       207 ~~~~---~~~~~~~l~~~d~--~-----~~-----~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (396)
T 3c5m_A          207 HEGP---HDLVDARMWLVNE--D-----GS-----NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP  271 (396)
T ss_dssp             ECSC---SSSCSCCCEEEET--T-----SC-----CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred             ecCC---CCCCCceEEEEEC--C-----CC-----ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence            7421   0011145666655  3     23     445555432 124566899999999999987655555  999999


Q ss_pred             CCCccccceeeCCCCCCcccceeEec-CCCEEEEEecCCC--------CCCCCceeEEEEeCCCCceEEeeecCCCC-CC
Q 039497          468 VNGEFNGDIRQLTDGPWIDTMPSWSP-KGDLIAFSSNRHN--------PDNVEAFSLYVIKPDGSGLRRIHVAGPEG-SG  537 (642)
Q Consensus       468 ~~g~~~~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~~--------~~~~~~~~l~~~d~~~~~~~~l~~~~~~~-~~  537 (642)
                      .+|+.    +.+...... . +.|+| ||++|++......        ....+...||++|+++++.+.++...... ..
T Consensus       272 ~~g~~----~~l~~~~~~-~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~  345 (396)
T 3c5m_A          272 ETLEN----EEVMVMPPC-S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVL  345 (396)
T ss_dssp             TTCCE----EEEEECCSE-E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCB
T ss_pred             CCCCe----EEeeeCCCC-C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccc
Confidence            98874    555543332 2 89999 9998887653200        00113467999999998887776532200 00


Q ss_pred             Cccc-ccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497          538 DVDR-ERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       538 ~~~~-~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                      ..++ .....+.|||||++|+|.+...+.              ..||.++++++..+.+.
T Consensus       346 ~~~~~~~~~~~~~s~dg~~l~~~s~~~~~--------------~~l~~~~~~~~~~~~~~  391 (396)
T 3c5m_A          346 DGDRQITHPHPSFTPNDDGVLFTSDFEGV--------------PAIYIADVPESYKHLEH  391 (396)
T ss_dssp             TTBSSTTCCCCEECTTSSEEEEEECTTSS--------------CEEEEEECCTTCC----
T ss_pred             cccccCCCCCceEccCCCeEEEEecCCCC--------------ceEEEEEEccccccccc
Confidence            0000 013568999999999999876543              38999999988766554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.95  E-value=3.3e-25  Score=249.30  Aligned_cols=370  Identities=14%  Similarity=0.058  Sum_probs=240.0

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC------Cc--ceEeeCCe-EEEEEecC-
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG------GW--PTWSGDST-IYFHRQAD-  211 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~------~~--~~wspdg~-~~~~~~~~-  211 (642)
                      ...++|||||++|+..  +.            .|++|++.+++.+++.....      ..  ++|||||+ +++..... 
T Consensus        19 ~~~~~w~~dg~~~~~~--~~------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~   84 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--EN------------NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK   84 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TT------------EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CC------------cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCee
Confidence            4578999999988774  33            69999999999877765332      12  68999996 55544321 


Q ss_pred             ----CCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCC------C
Q 039497          212 ----DGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP------N  281 (642)
Q Consensus       212 ----~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~------~  281 (642)
                          .....+|.+++.++        +..+++.....+..++|||||++|+|+..      ..|+++++..+.      .
T Consensus        85 ~~r~~~~~~~~~~d~~~~--------~~~~l~~~~~~~~~~~~SPdG~~la~~~~------~~i~~~~~~~~~~~~lt~~  150 (740)
T 4a5s_A           85 QWRHSYTASYDIYDLNKR--------QLITEERIPNNTQWVTWSPVGHKLAYVWN------NDIYVKIEPNLPSYRITWT  150 (740)
T ss_dssp             CSSSCEEEEEEEEETTTT--------EECCSSCCCTTEEEEEECSSTTCEEEEET------TEEEEESSTTSCCEECCSC
T ss_pred             eEEEccceEEEEEECCCC--------cEEEcccCCCcceeeEECCCCCEEEEEEC------CeEEEEECCCCceEEEcCC
Confidence                11248899999998        56677776556788999999999999743      278888873211      1


Q ss_pred             --------------------CcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCc-eeEEeeeCCCccEEcCC
Q 039497          282 --------------------FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVK-ELRMLRLNGSFPSFSPD  340 (642)
Q Consensus       282 --------------------~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spd  340 (642)
                                          .....+.|||||++|+|.+.+...     ...+......... ..    .......+.++
T Consensus       151 g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~-----v~~~~~~~~~~~~~~~----~~~~~~~yp~~  221 (740)
T 4a5s_A          151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE-----VPLIEYSFYSDESLQY----PKTVRVPYPKA  221 (740)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT-----CCEEEEEECCSTTCSS----CEEEEEECCBT
T ss_pred             CCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccC-----CceEEEEeecCCCCCC----CcceeecCCCC
Confidence                                111347899999999999876552     1122111111100 00    00001233334


Q ss_pred             CCEEEEEecCCCceeEEEEECCC---C---CeeEEee-------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          341 GGLIVFNHDFELNAGIKIAKSDG---S---KRWTLIK-------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~~---~---~~~~l~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      |..       .....|+++|+++   +   +..++..       ...+..+.|||||+.+++.....   .....+.+|+
T Consensus       222 G~~-------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~---~~~~~i~~~d  291 (740)
T 4a5s_A          222 GAV-------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI---QNYSVMDICD  291 (740)
T ss_dssp             TSC-------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS---TTEEEEEEEE
T ss_pred             cCc-------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC---CCEEEEEEEE
Confidence            421       3345899999998   7   5555542       23466889999999887766531   1123455666


Q ss_pred             EEeecCCCCCCCC----CccccceEEc-cccCCCC-----ccCcEECCCCCeEE-EEeCCCCceeEEEEECCCCccccce
Q 039497          408 VSFQLDPSDDNNR----EEIPCDVKIL-TKEETGN-----NAFPSCSPDGKFLV-FRSGRSGHKNLFVLDAVNGEFNGDI  476 (642)
Q Consensus       408 ~~~~~~~~~~~~~----~~~~~~~~~l-~~~~~~~-----~~~~~~SpDg~~l~-~~~~~~g~~~l~~~d~~~g~~~~~~  476 (642)
                      +..        +.    +.   ....+ .......     ...+.|||||++|+ +.+.++|..+||++++++++.    
T Consensus       292 ~~t--------g~~~~~~~---~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~----  356 (740)
T 4a5s_A          292 YDE--------SSGRWNCL---VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC----  356 (740)
T ss_dssp             EET--------TTTEEEEC---GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC----
T ss_pred             CCC--------Ccccccee---EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce----
Confidence            554        11    00   11222 1111122     23789999999998 888888999999999998874    


Q ss_pred             eeCCCCCCcccceeEecCCCEEEEEecC--CCCCCCCceeEEEEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCC
Q 039497          477 RQLTDGPWIDTMPSWSPKGDLIAFSSNR--HNPDNVEAFSLYVIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADG  553 (642)
Q Consensus       477 ~~l~~~~~~~~~~~~spdG~~l~~~~~~--~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg  553 (642)
                      ++|+.+.+.+..+ +++||+.|+|.+..  ..   ....+||+++++++..+ +++......     ......+.|||||
T Consensus       357 ~~lT~g~~~v~~~-~~~d~~~i~f~~~~~~~~---~~~~~ly~v~~~g~~~~~~lt~~~~~~-----~~~~~~~~~S~dg  427 (740)
T 4a5s_A          357 TFITKGTWEVIGI-EALTSDYLYYISNEYKGM---PGGRNLYKIQLIDYTKVTCLSCELNPE-----RCQYYSVSFSKEA  427 (740)
T ss_dssp             EESCCSSSCEEEE-EEECSSEEEEEESCGGGC---TTCBEEEEEETTEEEEEEESSTTTSTT-----TBCBEEEEECTTS
T ss_pred             EecccCCEEEEEE-EEEeCCEEEEEEecCCCC---CceeEEEEEECCCCCcceeeccccCCC-----CCceEEEEECCCC
Confidence            8999886666554 44679999999986  32   26789999999887665 555321000     0145689999999


Q ss_pred             CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497          554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                      +++++.....+.              ..+++++..+++..+++
T Consensus       428 ~~~~~~~s~~~~--------------p~~~l~~~~~~~~~~~l  456 (740)
T 4a5s_A          428 KYYQLRCSGPGL--------------PLYTLHSSVNDKGLRVL  456 (740)
T ss_dssp             SEEEEEECSBSS--------------CEEEEEETTTTEEEEEE
T ss_pred             CEEEEEeCCCCC--------------CEEEEEECCCCcEEEEe
Confidence            999988765432              27888888876654443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.95  E-value=2e-26  Score=238.81  Aligned_cols=347  Identities=17%  Similarity=0.145  Sum_probs=218.9

Q ss_pred             ceEEEEccCCceEecccCCCccCC-----ceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-
Q 039497          121 ALYSTDLKASKFTRLTPYGVVDYS-----PSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG-  194 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~~~~-----~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-  194 (642)
                      ++|..+..++..++|+.+......     |+|||||++|||.+...         +..+||++++++++.++++..... 
T Consensus        12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---------g~~~l~~~d~~~g~~~~lt~~~~~~   82 (388)
T 3pe7_A           12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFD---------GPWNYYLLDLNTQVATQLTEGRGDN   82 (388)
T ss_dssp             EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT---------SSCEEEEEETTTCEEEECCCSSCBC
T ss_pred             eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCC---------CCceEEEEeCCCCceEEeeeCCCCC
Confidence            688877778889999987654433     99999999999998744         356899999999999998875542 


Q ss_pred             --cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-CCccc--cceeecCCcEEEEEEeccCCcee
Q 039497          195 --WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-GVHCF--TPAAFHDGKRLAVATRRKNRNFR  269 (642)
Q Consensus       195 --~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~SpdG~~l~~~~~~~~~~~~  269 (642)
                        .+.|||||+.++... .+  ..|+.+++.++        +...+... .....  ...++|||++++.          
T Consensus        83 ~~~~~~spdg~~l~~~~-~~--~~l~~~d~~~g--------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~----------  141 (388)
T 3pe7_A           83 TFGGFLSPDDDALFYVK-DG--RNLMRVDLATL--------EENVVYQVPAEWVGYGTWVANSDCTKLVG----------  141 (388)
T ss_dssp             SSSCEECTTSSEEEEEE-TT--TEEEEEETTTC--------CEEEEEECCTTEEEEEEEEECTTSSEEEE----------
T ss_pred             ccceEEcCCCCEEEEEe-CC--CeEEEEECCCC--------cceeeeechhhcccccceeECCCCCeecc----------
Confidence              469999996444442 22  38999999887        44433322 11111  1112445544433          


Q ss_pred             eEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEE--
Q 039497          270 HIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFN--  347 (642)
Q Consensus       270 ~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~--  347 (642)
                                                   .......                               +.|..++..|.  
T Consensus       142 -----------------------------~~~~~~~-------------------------------~~~~~~~~~~~~~  161 (388)
T 3pe7_A          142 -----------------------------IEIRRED-------------------------------WVPLTDWKKFHEF  161 (388)
T ss_dssp             -----------------------------EEEEGGG-------------------------------CCCCCSHHHHHHH
T ss_pred             -----------------------------ccccCcc-------------------------------cccccccchhhhh
Confidence                                         2211110                               00000100000  


Q ss_pred             ecCCCceeEEEEECCCCCeeEEee-cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcccc
Q 039497          348 HDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC  425 (642)
Q Consensus       348 ~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  425 (642)
                      ........|+++|+++++.+.+.. ...+..+.||| ||++|+|+....   .......||.++.  +     ++     
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~---~~~~~~~l~~~d~--~-----~~-----  226 (388)
T 3pe7_A          162 YFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGP---HDLVDARMWLINE--D-----GT-----  226 (388)
T ss_dssp             GGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSC---TTTSSCSEEEEET--T-----SC-----
T ss_pred             hccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecC---CCCCcceEEEEeC--C-----CC-----
Confidence            001223689999999998877766 55678899999 999999998531   1112446777765  3     23     


Q ss_pred             ceEEccccCC-CCccCcEECCCCCeEEEEeCCCCcee--EEEEECCCCccccceeeCCCCCC------cccceeEecCCC
Q 039497          426 DVKILTKEET-GNNAFPSCSPDGKFLVFRSGRSGHKN--LFVLDAVNGEFNGDIRQLTDGPW------IDTMPSWSPKGD  496 (642)
Q Consensus       426 ~~~~l~~~~~-~~~~~~~~SpDg~~l~~~~~~~g~~~--l~~~d~~~g~~~~~~~~l~~~~~------~~~~~~~spdG~  496 (642)
                      ..+.+..... ..+..+.|||||++|+|.+.+.+..+  ||++|+.+|+.    +.++....      ....+.|||||+
T Consensus       227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~~~~~~~spdg~  302 (388)
T 3pe7_A          227 NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN----RQLTSMPACSHLMSNYDGSLMVGDGS  302 (388)
T ss_dssp             CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE----EEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred             ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce----EEEEcCCCceeeeecCCCCeEccCCC
Confidence            5566665441 13557899999999999887666544  99999999884    55544322      123348999999


Q ss_pred             EEEEEecCCCCC-CCCceeEEEEeCCCCceEEeeecCCCCC-C-CcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497          497 LIAFSSNRHNPD-NVEAFSLYVIKPDGSGLRRIHVAGPEGS-G-DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP  573 (642)
Q Consensus       497 ~l~~~~~~~~~~-~~~~~~l~~~d~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~  573 (642)
                      +|++...+.... ......||++|+++++.+.++.....-. . ......+..++|||||++|+|.+...+.        
T Consensus       303 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~--------  374 (388)
T 3pe7_A          303 DAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGK--------  374 (388)
T ss_dssp             CC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS--------
T ss_pred             cceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCc--------
Confidence            999876431000 0145679999999999888876432000 0 0000014678999999999999977654        


Q ss_pred             CCCCCCCcEEEEEcCCC
Q 039497          574 NQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       574 ~~~~~~~~l~~~~~~~~  590 (642)
                            .+||.+++..+
T Consensus       375 ------~~l~~~~l~~~  385 (388)
T 3pe7_A          375 ------PALYLATLPES  385 (388)
T ss_dssp             ------CEEEEEECCGG
T ss_pred             ------eeEEEEECChh
Confidence                  38999998754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.95  E-value=1.2e-24  Score=259.77  Aligned_cols=479  Identities=12%  Similarity=0.039  Sum_probs=301.2

Q ss_pred             eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcc
Q 039497           36 EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQI  115 (642)
Q Consensus        36 ~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (642)
                      ...+..|...+...+|| |||++||.. ..+|...||....+. ....+.........-..+.+++.++..+. +     
T Consensus       608 ~~~~~~h~~~v~~~~~s-~~~~~l~s~-~~d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d-----  678 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFS-QDGQRIASC-GADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSA-D-----  678 (1249)
T ss_dssp             SEEECCCSSCEEEEEEC-TTSSEEEEE-ETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEET-T-----
T ss_pred             eEEEecccccEEEEEEC-CCCCEEEEE-eCCCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeC-C-----
Confidence            34566899999999999 999999854 467888899873332 22222211111110012224555554433 2     


Q ss_pred             cccccceEEEEccCCceE-ecccCCCccCCceeCCCC--cEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC
Q 039497          116 FKSWSALYSTDLKASKFT-RLTPYGVVDYSPSVSYSG--KFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER  192 (642)
Q Consensus       116 ~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~SPDG--~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~  192 (642)
                          +.|.++++.+++.. .+..+.......+|+|++  ..++....+.            .|.+|++.+++.......+
T Consensus       679 ----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~------------~v~vwd~~~~~~~~~~~~h  742 (1249)
T 3sfz_A          679 ----KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF------------FLKLWDLNQKECRNTMFGH  742 (1249)
T ss_dssp             ----SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS------------CEEEEETTSSSEEEEECCC
T ss_pred             ----CeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC------------eEEEEECCCcchhheecCC
Confidence                14666688877654 455555556778999954  4666665544            6999999998866554433


Q ss_pred             CC---cceEeeCCeEEEEEecCCCceEEEEEecCCCccccc--------------------------CC-----------
Q 039497          193 GG---WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLG--------------------------FP-----------  232 (642)
Q Consensus       193 ~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~--------------------------~~-----------  232 (642)
                      ..   .+.|+||+.++++. ..+|...+|.  +.++.....                          .+           
T Consensus       743 ~~~v~~~~~sp~~~~l~s~-s~dg~v~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~  819 (1249)
T 3sfz_A          743 TNSVNHCRFSPDDELLASC-SADGTLRLWD--VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN  819 (1249)
T ss_dssp             SSCEEEEEECSSTTEEEEE-ESSSEEEEEE--GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred             CCCEEEEEEecCCCEEEEE-ECCCeEEEEe--CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence            32   45999999888877 4577555554  333310000                          00           


Q ss_pred             ----------ccceee-CCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee--------cCCCCcccCCeecCCC
Q 039497          233 ----------IAPTRV-TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT--------LNPNFHHYNPFVSANS  293 (642)
Q Consensus       233 ----------~~~~~l-~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~~~~spDg  293 (642)
                                .....+ ..+...+..++|+|+|+.++....     ...+.+||+.        ..+...+....|+|||
T Consensus       820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg  894 (1249)
T 3sfz_A          820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-----QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG  894 (1249)
T ss_dssp             EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS-----SSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence                      000000 012223344455555555554322     2367777772        3445556778899999


Q ss_pred             CEEEEEEeecCCCCCCcccceEeecc------------------------------------CCCceeEE-eeeCCCccE
Q 039497          294 EFIGYHRFRGESTEGQSTIPHLEPVA------------------------------------SPVKELRM-LRLNGSFPS  336 (642)
Q Consensus       294 ~~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~-~~~~~~~~~  336 (642)
                      +.++....++.      ..+|-....                                    ........ .........
T Consensus       895 ~~l~s~s~dg~------v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  968 (1249)
T 3sfz_A          895 SSFLTASDDQT------IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC  968 (1249)
T ss_dssp             SEEEEEETTSC------EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred             CEEEEEeCCCe------EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence            98887765443      222221100                                    00000000 001113467


Q ss_pred             EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      |+|+|+.+++...   ...|.++++..++......  ...+..+.|+|||+.|+..+.       ++.+++|++..    
T Consensus       969 ~sp~g~~l~~g~~---~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-------dg~i~vwd~~~---- 1034 (1249)
T 3sfz_A          969 LSPHLEYVAFGDE---DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-------DSVIQVWNWQT---- 1034 (1249)
T ss_dssp             ECTTSSEEEEEET---TSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECS-------SSBEEEEETTT----
T ss_pred             EcCCCCEEEEEcC---CCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcC-------CCEEEEEECCC----
Confidence            9999998888654   3678888988877555433  567889999999999988763       68899998854    


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK  494 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd  494 (642)
                           +     ....+..+. ..+..+.|+|+++.+ ..+.   ...|.+||+.+++.   ...+..+...+..++|+||
T Consensus      1035 -----~-----~~~~~~~~~-~~v~~~~~~~~~~l~-~~~~---dg~v~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d 1096 (1249)
T 3sfz_A         1035 -----G-----DYVFLQAHQ-ETVKDFRLLQDSRLL-SWSF---DGTVKVWNVITGRI---ERDFTCHQGTVLSCAISSD 1096 (1249)
T ss_dssp             -----T-----EEECCBCCS-SCEEEEEECSSSEEE-EEES---SSEEEEEETTTTCC---CEEEECCSSCCCCEEECSS
T ss_pred             -----C-----ceEEEecCC-CcEEEEEEcCCCcEE-EEEC---CCcEEEEECCCCce---eEEEcccCCcEEEEEECCC
Confidence                 2     333444444 677789999988644 4442   23799999999886   6777777777889999999


Q ss_pred             CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497          495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN  574 (642)
Q Consensus       495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~  574 (642)
                      |++|+..+.++.        |++||+.+++...... ++.+       .+..++|||||++|+..+.++           
T Consensus      1097 ~~~l~s~s~d~~--------v~iwd~~~~~~~~~l~-~h~~-------~v~~~~~s~dg~~lat~~~dg----------- 1149 (1249)
T 3sfz_A         1097 ATKFSSTSADKT--------AKIWSFDLLSPLHELK-GHNG-------CVRCSAFSLDGILLATGDDNG----------- 1149 (1249)
T ss_dssp             SSSCEEECCSSC--------CCEECSSSSSCSBCCC-CCSS-------CEEEEEECSSSSEEEEEETTS-----------
T ss_pred             CCEEEEEcCCCc--------EEEEECCCcceeeeec-cCCC-------cEEEEEECCCCCEEEEEeCCC-----------
Confidence            999988887664        8999998766433222 3333       578899999999998887664           


Q ss_pred             CCCCCCcEEEEEcCCCceee-c---------cCCCCCCCCcEEecCCceEEeec
Q 039497          575 QFQPYGDLYVVKLDGSGLRR-L---------TWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       575 ~~~~~~~l~~~~~~~~~~~~-l---------t~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                            .|.+|++.+++... +         ..+...+..++|||||+++++..
T Consensus      1150 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A         1150 ------EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp             ------CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred             ------EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence                  67777887665332 2         33556678999999999998753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=2.5e-24  Score=242.83  Aligned_cols=362  Identities=13%  Similarity=0.182  Sum_probs=236.7

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC---------------------------CC
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER---------------------------GG  194 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---------------------------~~  194 (642)
                      ...++|||||++|||.+...      .......|++|++.+++.++++...                           ..
T Consensus        39 ~~~~~~SpdG~~la~~~~~d------~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKD------SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCS------SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCceEecCCCEEEEEeccC------CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            45689999999999987622      0012458999999999988877532                           13


Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY  274 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~  274 (642)
                      .++|||||+.+++...    ..|+.+++.++..     ....+++.+...+..++|||||++|+++...      .|++|
T Consensus       113 ~~~~SpDg~~l~~~~~----~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~------~i~~~  177 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG----GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKGGFVSFIRGR------NLWVI  177 (741)
T ss_dssp             CCEECTTSSEEEEEET----TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTSSEEEEEETT------EEEEE
T ss_pred             eeEECCCCCEEEEEeC----CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCCCEEEEEeCC------cEEEE
Confidence            5799999975555422    3888888887610     0124555555567789999999999997532      78888


Q ss_pred             EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC---
Q 039497          275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE---  351 (642)
Q Consensus       275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~---  351 (642)
                      |+......     .+..++..-++.   +       ...|+..     ..    ......+.|||||++|+|.....   
T Consensus       178 d~~~g~~~-----~~~~~~~~~~~~---g-------~~~~v~~-----~~----~~~~~~~~~SpDg~~l~~~~~d~~~~  233 (741)
T 2ecf_A          178 DLASGRQM-----QLTADGSTTIGN---G-------IAEFVAD-----EE----MDRHTGYWWAPDDSAIAYARIDESPV  233 (741)
T ss_dssp             ETTTTEEE-----ECCCCCCSSEEE---S-------CCCHHHH-----HH----SCCCCSEEECTTSSCEEEEEEECTTS
T ss_pred             ecCCCCEE-----EeccCCccceec---c-------ccceeee-----ec----cccccceEECCCCCEEEEEEEcCCCC
Confidence            87321100     000000000000   0       0000000     00    00124679999999999975422   


Q ss_pred             ---------------------------CceeEEEEECCC-CCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccC
Q 039497          352 ---------------------------LNAGIKIAKSDG-SKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSE  399 (642)
Q Consensus       352 ---------------------------~~~~l~~~d~~~-~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~  399 (642)
                                                 ....|+++|+++ ++...+..    ...+..+.| |||++|++....    ..
T Consensus       234 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~----~~  308 (741)
T 2ecf_A          234 PVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQS----RD  308 (741)
T ss_dssp             CEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEE----TT
T ss_pred             ceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEec----cc
Confidence                                       223899999998 88766653    245678899 999999988742    12


Q ss_pred             CCeEEEEEEEeecCCCCCCCCCccccceEEccccCC-C---CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccc
Q 039497          400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET-G---NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD  475 (642)
Q Consensus       400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~---~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~  475 (642)
                      .....|+.++.  .     ++     ....+..... .   ....++|||||+ +++.+.+++..+||.++.+++ .   
T Consensus       309 ~~~~~i~~~d~--~-----~g-----~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~---  371 (741)
T 2ecf_A          309 QKKLDLVEVTL--A-----SN-----QQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-A---  371 (741)
T ss_dssp             SSEEEEEEEET--T-----TC-----CEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-E---
T ss_pred             CCeEEEEEEEC--C-----CC-----ceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-e---
Confidence            34455666655  2     23     3333332221 1   335799999999 667777778889999998755 4   


Q ss_pred             eeeCCCCCCcccce-eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497          476 IRQLTDGPWIDTMP-SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       476 ~~~l~~~~~~~~~~-~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                       +.|+.+...+..+ .|||||++|++.+....   ....+||.++++++..+.++.   ..       .+..+.|||||+
T Consensus       372 -~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~---~~~~~l~~~~~~g~~~~~l~~---~~-------~~~~~~~spdg~  437 (741)
T 2ecf_A          372 -AALTHGNWSVDELLAVDEKAGLAYFRAGIES---ARESQIYAVPLQGGQPQRLSK---AP-------GMHSASFARNAS  437 (741)
T ss_dssp             -EESCCSSSCEEEEEEEETTTTEEEEEECSSC---TTCBEEEEEETTCCCCEECCC---SC-------SEEEEEECTTSS
T ss_pred             -eeeeecceEEEeEeEEeCCCCEEEEEEeCCC---CceEEEEEEEcCCCCeeeccc---CC-------CceEEEECCCCC
Confidence             8888776666666 59999999999887542   135678888887777777764   12       356899999999


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW  597 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~  597 (642)
                      +|++.......             ...+|+++.+++..+.|+.
T Consensus       438 ~l~~~~~~~~~-------------p~~~~l~~~~~~~~~~l~~  467 (741)
T 2ecf_A          438 VYVDSWSNNST-------------PPQIELFRANGEKIATLVE  467 (741)
T ss_dssp             EEEEEEEETTE-------------EEEEEEEETTSCEEECSSC
T ss_pred             EEEEEecCCCC-------------CCeEEEEEcCCCeEEEecc
Confidence            99988765432             2379999988877766664

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.8e-24  Score=224.40  Aligned_cols=314  Identities=14%  Similarity=0.123  Sum_probs=224.7

Q ss_pred             ccccceeecCCcEEEEEEe----ccCCceeeEEEEEe--ecCCCC----------cccCCeec--------------CCC
Q 039497          244 HCFTPAAFHDGKRLAVATR----RKNRNFRHIEIYDL--TLNPNF----------HHYNPFVS--------------ANS  293 (642)
Q Consensus       244 ~~~~~~~SpdG~~l~~~~~----~~~~~~~~i~~~d~--~~~~~~----------~~~~~~~s--------------pDg  293 (642)
                      .+....|++.|..+++...    ..+.....+++||+  ..+...          .....+++              +.+
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~  143 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR  143 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            4556778888876664432    12334457899998  543311          01111122              237


Q ss_pred             CEEEEEEeecCCCCCCcccceEeeccCCC-ceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-
Q 039497          294 EFIGYHRFRGESTEGQSTIPHLEPVASPV-KELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-  371 (642)
Q Consensus       294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-  371 (642)
                      ++++|........  ....+++..+++.. ..+.........++|||||++|++.+...+...|+++|+++++...+.. 
T Consensus       144 ~~l~~~s~~~~~~--~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~  221 (415)
T 2hqs_A          144 TRIAYVVQTNGGQ--FPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF  221 (415)
T ss_dssp             CEEEEEEECSSSS--CCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC
T ss_pred             CEEEEEEecCCCC--ccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC
Confidence            8888887653210  00234555555432 2222111223568999999999998876566899999999988777665 


Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      ...+..+.|||||++|+++...      ++...||.++.  .     ++     ....+..+. ..+..+.|||||++|+
T Consensus       222 ~~~~~~~~~spdg~~la~~~~~------~g~~~i~~~d~--~-----~~-----~~~~l~~~~-~~~~~~~~spdg~~l~  282 (415)
T 2hqs_A          222 PRHNGAPAFSPDGSKLAFALSK------TGSLNLYVMDL--A-----SG-----QIRQVTDGR-SNNTEPTWFPDSQNLA  282 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECT------TSSCEEEEEET--T-----TC-----CEEECCCCS-SCEEEEEECTTSSEEE
T ss_pred             CCcccCEEEcCCCCEEEEEEec------CCCceEEEEEC--C-----CC-----CEEeCcCCC-CcccceEECCCCCEEE
Confidence            5567899999999999988742      33434454444  2     23     556777665 6778899999999999


Q ss_pred             EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                      +.+.+++..+||++|+.+++.    +.++.....+..++|||||++|++.+...     +...|++||+++++.+.++..
T Consensus       283 ~~s~~~g~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~spdG~~l~~~~~~~-----g~~~i~~~d~~~~~~~~l~~~  353 (415)
T 2hqs_A          283 FTSDQAGRPQVYKVNINGGAP----QRITWEGSQNQDADVSSDGKFMVMVSSNG-----GQQHIAKQDLATGGVQVLSST  353 (415)
T ss_dssp             EEECTTSSCEEEEEETTSSCC----EECCCSSSEEEEEEECTTSSEEEEEEECS-----SCEEEEEEETTTCCEEECCCS
T ss_pred             EEECCCCCcEEEEEECCCCCE----EEEecCCCcccCeEECCCCCEEEEEECcC-----CceEEEEEECCCCCEEEecCC
Confidence            999877778999999998874    77776656677899999999999998754     346799999999888776542


Q ss_pred             CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCC
Q 039497          532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGN  611 (642)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg  611 (642)
                      .          .+..+.|+|||+.|++.+.+++..              .||+|+++++..++|+.+.+.+.+++|||--
T Consensus       354 ~----------~~~~~~~spdg~~l~~~s~~~~~~--------------~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          354 F----------LDETPSLAPNGTMVIYSSSQGMGS--------------VLNLVSTDGRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             S----------SCEEEEECTTSSEEEEEEEETTEE--------------EEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred             C----------CcCCeEEcCCCCEEEEEEcCCCcc--------------EEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence            2          357899999999999998776532              7999999999999999988888999999964

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1.5e-23  Score=236.49  Aligned_cols=318  Identities=9%  Similarity=0.042  Sum_probs=202.4

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCC---CceeEeecCC--CcceEeeCCeEEEEEecCCCceE
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDP---NKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWS  216 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~  216 (642)
                      ...++|||||++||+...             ..|++|++.++   +.++++....  ..++|||||+.++...  ++  +
T Consensus       111 v~~~~~SpDg~~l~~~~~-------------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~--~~--~  173 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-------------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR--GR--N  173 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-------------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE--TT--E
T ss_pred             cceeEECCCCCEEEEEeC-------------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe--CC--c
Confidence            456899999999999875             37999999998   7777765433  3579999997444432  23  8


Q ss_pred             EEEEecCCCcccccCCccceeeCCCCCc-----------------cccceeecCCcEEEEEEeccCCceeeEEEEEeecC
Q 039497          217 IFRVSFPENLEFLGFPIAPTRVTPPGVH-----------------CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLN  279 (642)
Q Consensus       217 l~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~  279 (642)
                      |+.+++.++        ...+++..+..                 ...++|||||++|++...+.+... .   ++.   
T Consensus       174 i~~~d~~~g--------~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~-~---~~~---  238 (741)
T 2ecf_A          174 LWVIDLASG--------RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP-V---QKR---  238 (741)
T ss_dssp             EEEEETTTT--------EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC-E---EEE---
T ss_pred             EEEEecCCC--------CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc-e---Eec---
Confidence            999999887        55666554322                 367899999999999865542111 1   110   


Q ss_pred             CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC-CC-ceeEEe---eeCCCccEEcCCCCEEEEEec--CCC
Q 039497          280 PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS-PV-KELRML---RLNGSFPSFSPDGGLIVFNHD--FEL  352 (642)
Q Consensus       280 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~~spdg~~l~~~~~--~~~  352 (642)
                             ..+.|++....-.+.......+....+++..+.. .. ..+...   ......+.| |||++|++...  ...
T Consensus       239 -------~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~  310 (741)
T 2ecf_A          239 -------YEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQK  310 (741)
T ss_dssp             -------EEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSS
T ss_pred             -------CCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCC
Confidence                   0111221111111110000001111223333222 11 111000   001135689 99999998653  234


Q ss_pred             ceeEEEEECCCCCeeEEee-cC-----CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497          353 NAGIKIAKSDGSKRWTLIK-DR-----TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD  426 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~-~~-----~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  426 (642)
                      ...|+++|+++++...+.. ..     .+..+.|||||+ +++.+.      .++..+||.++.        .+     .
T Consensus       311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~------~~g~~~l~~~~~--------~~-----~  370 (741)
T 2ecf_A          311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSE------RTGFQHLYRIDS--------KG-----K  370 (741)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEEC------TTSSCEEEEECS--------SS-----C
T ss_pred             eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEec------CCCccEEEEEcC--------CC-----C
Confidence            6789999999998777665 11     345899999999 555553      256678888876        23     3


Q ss_pred             eEEccccCCCCccCc-EECCCCCeEEEEeCCCC--ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEec
Q 039497          427 VKILTKEETGNNAFP-SCSPDGKFLVFRSGRSG--HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN  503 (642)
Q Consensus       427 ~~~l~~~~~~~~~~~-~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~  503 (642)
                      .+.++.+. ..+..+ .|||||++|++.+..++  ..+||.++..++.    ++.|+.. ..+..+.|||||++|++...
T Consensus       371 ~~~l~~~~-~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~----~~~l~~~-~~~~~~~~spdg~~l~~~~~  444 (741)
T 2ecf_A          371 AAALTHGN-WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ----PQRLSKA-PGMHSASFARNASVYVDSWS  444 (741)
T ss_dssp             EEESCCSS-SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC----CEECCCS-CSEEEEEECTTSSEEEEEEE
T ss_pred             eeeeeecc-eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC----eeecccC-CCceEEEECCCCCEEEEEec
Confidence            45666655 455555 59999999999887665  5578888876544    4777763 44568899999999999876


Q ss_pred             CCCCCCCCceeEEEEeCCCCceEEee
Q 039497          504 RHNPDNVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       504 ~~~~~~~~~~~l~~~d~~~~~~~~l~  529 (642)
                      ...    ....+++++++++..+.++
T Consensus       445 ~~~----~p~~~~l~~~~~~~~~~l~  466 (741)
T 2ecf_A          445 NNS----TPPQIELFRANGEKIATLV  466 (741)
T ss_dssp             ETT----EEEEEEEEETTSCEEECSS
T ss_pred             CCC----CCCeEEEEEcCCCeEEEec
Confidence            543    5678999999877665554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.5e-23  Score=235.77  Aligned_cols=347  Identities=13%  Similarity=0.107  Sum_probs=220.0

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC------CcceEeeCCeEEEEEecCCC--
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG------GWPTWSGDSTIYFHRQADDG--  213 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~------~~~~wspdg~~~~~~~~~~g--  213 (642)
                      ...++|||||++|+. ..            ...|++|++.+++.+++.....      ..++|||||+.++......+  
T Consensus        19 ~~~~~~spdg~~~~~-~~------------dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~   85 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQ------------KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIY   85 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CS------------SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred             ccccEEcCCCcEEEE-eC------------CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccce
Confidence            456899999996653 22            2279999999999887776433      34699999975544422221  


Q ss_pred             ----ceEEEEEecCCCcccccCCccceeeCCCC---CccccceeecCCcEEEEEEeccCCceeeEEEEEeecCC------
Q 039497          214 ----WWSIFRVSFPENLEFLGFPIAPTRVTPPG---VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP------  280 (642)
Q Consensus       214 ----~~~l~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~------  280 (642)
                          ...|+.+++.++        ...++....   ..+..++|||||++|+|...      ..|++||+..+.      
T Consensus        86 ~~~~~~~i~~~d~~~~--------~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A           86 QHSYTGYYVLSKIPHG--------DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             SSCCCSEEEEEESSSC--------CCEECCCTTCCSCCCSBCCBCSSTTCEEEEET------TEEEEESSSSSCCEEEEC
T ss_pred             eecceeeEEEEECCCC--------ceEeccCCccccccccccEECCCCCEEEEEEC------CeEEEEECCCCceEEEec
Confidence                148999999888        445565432   23677999999999999764      278898873211      


Q ss_pred             --CC------------------cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCC
Q 039497          281 --NF------------------HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPD  340 (642)
Q Consensus       281 --~~------------------~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  340 (642)
                        ..                  ....+.|||||++|++...+...     ...+.........     ........++++
T Consensus       152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~~~~  221 (723)
T 1xfd_A          152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR-----VPIMELPTYTGSI-----YPTVKPYHYPKA  221 (723)
T ss_dssp             CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT-----SCEEEECCCSSSS-----SCCCEEEECCBT
T ss_pred             CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCc-----cceEEeeccCCcC-----CCcceeccCCCC
Confidence              11                  11458999999999998776542     1112111110000     001122345555


Q ss_pred             CCEEEEEecCCCceeEEEEECCCCCe-eEEee-------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          341 GGLIVFNHDFELNAGIKIAKSDGSKR-WTLIK-------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      |..       .....|+++|+++++. ..+..       ...+..+.|||||+.|++....     ......|+.++.  
T Consensus       222 G~~-------~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-----~~~~~~i~~~d~--  287 (723)
T 1xfd_A          222 GSE-------NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR-----AQNVSILTLCDA--  287 (723)
T ss_dssp             TSC-------CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET-----TSCEEEEEEEET--
T ss_pred             CCC-------CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC-----CCCeEEEEEEeC--
Confidence            541       2346899999998874 44442       2345679999999988776542     123344555544  


Q ss_pred             CCCCCCCCCccccceEEcc-ccCCCCc----cCcEECCCCCeEEEE-eCCCC----ceeEEEEE-CCCCc---cccceee
Q 039497          413 DPSDDNNREEIPCDVKILT-KEETGNN----AFPSCSPDGKFLVFR-SGRSG----HKNLFVLD-AVNGE---FNGDIRQ  478 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~-~~~~~~~----~~~~~SpDg~~l~~~-~~~~g----~~~l~~~d-~~~g~---~~~~~~~  478 (642)
                      .     ++     ....+. ......+    ..++|||||++|++. +.+++    ..+||++| ..+++   .    +.
T Consensus       288 ~-----~g-----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~----~~  353 (723)
T 1xfd_A          288 T-----TG-----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI----QS  353 (723)
T ss_dssp             T-----TC-----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC----CB
T ss_pred             C-----CC-----cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccce----eE
Confidence            2     23     333332 2211222    378999999999997 65555    56899999 56665   4    66


Q ss_pred             CCCCCCcccc-eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecC-CCCCCCcccccccceEEcCCCCE
Q 039497          479 LTDGPWIDTM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAG-PEGSGDVDRERINHVCFSADGEW  555 (642)
Q Consensus       479 l~~~~~~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~  555 (642)
                      |+.+...+.. ++|||||++|+|.+....   ....+||.++++++ +.+.++... ...       .+..++|||||++
T Consensus       354 l~~~~~~~~~~~~~spdg~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~spdg~~  423 (723)
T 1xfd_A          354 ITSGDWDVTKILAYDEKGNKIYFLSTEDL---PRRRQLYSANTVGNFNRQCLSCDLVENC-------TYFSASFSHSMDF  423 (723)
T ss_dssp             SCCSSSCEEEEEEEETTTTEEEEEESSSC---TTCCEEEEECSSTTCCCBCSSTTSSSSC-------CCCEEEECTTSSE
T ss_pred             eecCCeEEEeeeEEcCCCCEEEEEEcCCC---CcceEEEEEeCCCCCCcceecccccCCC-------CeEEEEECCCCCE
Confidence            7755444443 699999999999887642   14567888888765 344444210 122       3567999999999


Q ss_pred             EEEEEecC
Q 039497          556 LLFTANLG  563 (642)
Q Consensus       556 l~~~~~~~  563 (642)
                      |++.....
T Consensus       424 l~~~~~~~  431 (723)
T 1xfd_A          424 FLLKCEGP  431 (723)
T ss_dssp             EEEECCSS
T ss_pred             EEEEccCC
Confidence            99876544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=3.6e-24  Score=240.83  Aligned_cols=334  Identities=12%  Similarity=0.152  Sum_probs=211.3

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeC-CCCC---ccccceeecCCcEEEEEEeccCC----
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT-PPGV---HCFTPAAFHDGKRLAVATRRKNR----  266 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~---~~~~~~~SpdG~~l~~~~~~~~~----  266 (642)
                      .++|||||++++.  ..+|  .|+.++..++        +...+. .+..   .+..++|||||++|++.......    
T Consensus        21 ~~~~spdg~~~~~--~~dg--~i~~~d~~~g--------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~   88 (723)
T 1xfd_A           21 EAKWISDTEFIYR--EQKG--TVRLWNVETN--------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS   88 (723)
T ss_dssp             CCCBSSSSCBCCC--CSSS--CEEEBCGGGC--------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred             ccEEcCCCcEEEE--eCCC--CEEEEECCCC--------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence            4799999986654  3456  7888888887        334443 3332   37789999999999998654321    


Q ss_pred             ceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEE
Q 039497          267 NFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVF  346 (642)
Q Consensus       267 ~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  346 (642)
                      ....+++||+.....                                  ..+....    ........+.|||||++|+|
T Consensus        89 ~~~~i~~~d~~~~~~----------------------------------~~l~~~~----~~~~~~~~~~~SPdG~~la~  130 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDP----------------------------------QSLDPPE----VSNAKLQYAGWGPKGQQLIF  130 (723)
T ss_dssp             CCSEEEEEESSSCCC----------------------------------EECCCTT----CCSCCCSBCCBCSSTTCEEE
T ss_pred             ceeeEEEEECCCCce----------------------------------EeccCCc----cccccccccEECCCCCEEEE
Confidence            235777777632110                                  0000000    00001236789999999999


Q ss_pred             EecCCCceeEEEEECCCCCeeEEeec--CCc------------------eeeeeecCCCEEEEEEcCCCcc---------
Q 039497          347 NHDFELNAGIKIAKSDGSKRWTLIKD--RTA------------------FYNSWSPTEKHVIYTSTGPIFQ---------  397 (642)
Q Consensus       347 ~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~------------------~~~~~spdg~~l~~~~~~~~~~---------  397 (642)
                      .+.    .+|+++++++++.++++..  ..+                  ..+.|||||++|++.+......         
T Consensus       131 ~~~----~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~  206 (723)
T 1xfd_A          131 IFE----NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT  206 (723)
T ss_dssp             EET----TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred             EEC----CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC
Confidence            875    5899999999988887762  222                  5799999999999987531000         


Q ss_pred             ----------------cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-----CCCccCcEECCCCCeEEEEeCC
Q 039497          398 ----------------SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-----TGNNAFPSCSPDGKFLVFRSGR  456 (642)
Q Consensus       398 ----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDg~~l~~~~~~  456 (642)
                                      .......|+.++.  .     ++.    ....+....     ...+..++|||||+.|++...+
T Consensus       207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~--~-----~~~----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~  275 (723)
T 1xfd_A          207 GSIYPTVKPYHYPKAGSENPSISLHVIGL--N-----GPT----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR  275 (723)
T ss_dssp             SSSSCCCEEEECCBTTSCCCEEEEEEEES--S-----SSC----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred             CcCCCcceeccCCCCCCCCCeeEEEEEEC--C-----CCc----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC
Confidence                            0011223444433  2     121    234454321     1345678999999988776654


Q ss_pred             -CCceeEEEEECCCCccccceeeCC-C-CCCcc----cceeEecCCCEEEEE-ecCCCCCCCCceeEEEEe-CCCCc---
Q 039497          457 -SGHKNLFVLDAVNGEFNGDIRQLT-D-GPWID----TMPSWSPKGDLIAFS-SNRHNPDNVEAFSLYVIK-PDGSG---  524 (642)
Q Consensus       457 -~g~~~l~~~d~~~g~~~~~~~~l~-~-~~~~~----~~~~~spdG~~l~~~-~~~~~~~~~~~~~l~~~d-~~~~~---  524 (642)
                       .....|+++|+.+|+.    ..+. . ....+    ..+.|||||++|++. +.... ......+||++| ..+++   
T Consensus       276 ~~~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~~~~l~~~d~~~~~~~~~  350 (723)
T 1xfd_A          276 AQNVSILTLCDATTGVC----TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG-GRGKFYHITVSSSQPNSSNDN  350 (723)
T ss_dssp             TSCEEEEEEEETTTCCE----EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS-SSSCEEEEEEECSSCCSSSCC
T ss_pred             CCCeEEEEEEeCCCCcc----eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC-CCcceeEEEEEeccCCCCccc
Confidence             3456899999998884    4432 1 11222    378999999999987 43321 011256899999 57766   


Q ss_pred             eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC-ceeeccC---CCC
Q 039497          525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS-GLRRLTW---NGY  600 (642)
Q Consensus       525 ~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lt~---~~~  600 (642)
                      .+.++.... .       ....++|||||++|+|.+.+...            ...+||.++++++ ..+.|+.   +..
T Consensus       351 ~~~l~~~~~-~-------~~~~~~~spdg~~l~~~~~~~~~------------~~~~l~~~~~~~~~~~~~l~~~~~~~~  410 (723)
T 1xfd_A          351 IQSITSGDW-D-------VTKILAYDEKGNKIYFLSTEDLP------------RRRQLYSANTVGNFNRQCLSCDLVENC  410 (723)
T ss_dssp             CCBSCCSSS-C-------EEEEEEEETTTTEEEEEESSSCT------------TCCEEEEECSSTTCCCBCSSTTSSSSC
T ss_pred             eeEeecCCe-E-------EEeeeEEcCCCCEEEEEEcCCCC------------cceEEEEEeCCCCCCcceecccccCCC
Confidence            666653221 1       12236899999999999876411            0237888888775 4666775   345


Q ss_pred             CCCCcEEecCCceEEeec
Q 039497          601 ENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       601 ~~~~~~~s~dg~~~~~~~  618 (642)
                      .+..++|||||++++...
T Consensus       411 ~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          411 TYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             CCCEEEECTTSSEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEc
Confidence            567899999998886543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=1.9e-22  Score=222.11  Aligned_cols=501  Identities=10%  Similarity=0.010  Sum_probs=291.5

Q ss_pred             cceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCcee-eeeceecCC--CCCeEEEEEccCCCcceEEEcCC---
Q 039497            4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSI-NFNAQFVDG--QDQTIAFISERSGSPRIYQTRPG---   77 (642)
Q Consensus         4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~-~~~~~~S~p--DG~~laf~~~~~g~~~l~~~~~~---   77 (642)
                      |+.|++.      .++.|.+.++.....+.....++..|... ....+|+ |  ||++||.. ..+|...||.+..+   
T Consensus        30 g~~l~~~------~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~s-p~~~~~~l~s~-~~dg~v~vw~~~~~~~~  101 (615)
T 1pgu_A           30 TNAIAYP------CGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS-PIKGSQYLCSG-DESGKVIVWGWTFDKES  101 (615)
T ss_dssp             TTEEEEE------ETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEEC-SSTTCCEEEEE-ETTSEEEEEEEEEEGGG
T ss_pred             CCEEEEe------cCCeEEEEECCCCCCccccceEEecCCCceEEEEEEC-cCCCCCEEEEe-cCCCEEEEEeCCCCccc
Confidence            5566776      34566666665500011356788899999 9999999 9  99999854 45888999988432   


Q ss_pred             ----CCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCc-
Q 039497           78 ----SSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGK-  152 (642)
Q Consensus        78 ----g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~-  152 (642)
                          ......+.........-..+.+++.++........      .+.|+.++ .+.....+..+.......+|+|||+ 
T Consensus       102 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~  174 (615)
T 1pgu_A          102 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN------FGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPM  174 (615)
T ss_dssp             TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC------SEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             ccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC------ccEEEEEE-CCCcceeeecCCccEEEEEECCCCCc
Confidence                11111111101100000122256666665543211      12577666 3445566666666667789999998 


Q ss_pred             EEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC------cceEeeC-CeEEEEEecCCCceEEEEEecCCC
Q 039497          153 FIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG------WPTWSGD-STIYFHRQADDGWWSIFRVSFPEN  225 (642)
Q Consensus       153 ~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~------~~~wspd-g~~~~~~~~~~g~~~l~~~~~~~~  225 (642)
                      .|+....+.            .|.+|++.+++.......+..      .++|+|+ +.++++. ..+|  .|..+++.++
T Consensus       175 ~l~~~~~d~------------~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg--~i~vwd~~~~  239 (615)
T 1pgu_A          175 RSMTVGDDG------------SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSDR--KISCFDGKSG  239 (615)
T ss_dssp             EEEEEETTT------------EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETTC--CEEEEETTTC
T ss_pred             EEEEEeCCC------------cEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE-eCCC--eEEEEECCCC
Confidence            577766555            788999888765554442222      3599999 8888877 4567  4555566666


Q ss_pred             cccccCCccceee-C---CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCC------------CCcccCCee
Q 039497          226 LEFLGFPIAPTRV-T---PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP------------NFHHYNPFV  289 (642)
Q Consensus       226 ~~~~~~~~~~~~l-~---~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~------------~~~~~~~~~  289 (642)
                      .       ....+ .   .+...+..++|+ +|++|+....++     .+.+||+....            ........|
T Consensus       240 ~-------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (615)
T 1pgu_A          240 E-------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA-----TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA  306 (615)
T ss_dssp             C-------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS-----EEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred             C-------EeEEecccccccCCceEEEEEc-CCCEEEEEcCCC-----cEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence            3       33444 3   555677788999 999998866544     79999983211            112223344


Q ss_pred             cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe
Q 039497          290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR  366 (642)
Q Consensus       290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~  366 (642)
                      + +++.++....++.      ..+|  .+... ..+.....   ....+.| |+   ++....   ...|.++++.  . 
T Consensus       307 ~-~~~~l~~~~~~g~------i~~~--d~~~~-~~~~~~~~~~~~v~~~~~-~~---l~~~~~---dg~i~~w~~~--~-  366 (615)
T 1pgu_A          307 T-GNGRIISLSLDGT------LNFY--ELGHD-EVLKTISGHNKGITALTV-NP---LISGSY---DGRIMEWSSS--S-  366 (615)
T ss_dssp             E-ETTEEEEEETTSC------EEEE--ETTEE-EEEEEECCCSSCEEEEET-TT---TEEEET---TSCEEETTTT--E-
T ss_pred             C-CCCeEEEEECCCC------EEEE--ECCCC-cEEEEEeCCCCCEEEEEe-cC---cEEECC---CCeEEEEEch--h-
Confidence            3 7777776654433      2222  21111 01111100   1123345 54   333322   2344444443  1 


Q ss_pred             eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC------------CCC-------------CCCCC
Q 039497          367 WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD------------PSD-------------DNNRE  421 (642)
Q Consensus       367 ~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~-------------~~~~~  421 (642)
                      ........+..+.| ++++.|+..+.       ++.+.+|++....-            +..             ...+.
T Consensus       367 ~~~~~~~~v~~~~~-~~~~~l~~~~~-------d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  438 (615)
T 1pgu_A          367 MHQDHSNLIVSLDN-SKAQEYSSISW-------DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD  438 (615)
T ss_dssp             EECCCCSCEEEEEC-CSTTCCEEEET-------TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC
T ss_pred             hcCcccCceEEEEE-CCCcEEEEEeC-------CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCc
Confidence            11111233444444 33334443332       33344443322000            000             00010


Q ss_pred             ccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccce-eeCCCCCCcccceeEecCCCEEEE
Q 039497          422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI-RQLTDGPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~  500 (642)
                          ....+. .. ..+..+.|+  +++|+.....  ...|++|++.+++.   . ..+..+...+..++|+|||++|+.
T Consensus       439 ----~~~~~~-~~-~~~~~~~~~--~~~l~~~~~~--d~~i~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~  505 (615)
T 1pgu_A          439 ----IIKSVR-LN-SPGSAVSLS--QNYVAVGLEE--GNTIQVFKLSDLEV---SFDLKTPLRAKPSYISISPSETYIAA  505 (615)
T ss_dssp             ----EEEEEE-CS-SCEEEEEEC--SSEEEEEETT--TSCEEEEETTEEEE---EEECSSCCSSCEEEEEECTTSSEEEE
T ss_pred             ----eeeecc-cC-CCceEEEEc--CCEEEEeecC--CCeEEEEECCCccc---cccccCCccCceEEEEECCCCCEEEE
Confidence                222222 22 456667888  7788777641  34799999987763   2 445556667888999999999999


Q ss_pred             EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcC----------CCCEEEEEEecCCcccCCC
Q 039497          501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA----------DGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~----------Dg~~l~~~~~~~~~~~~~~  570 (642)
                      .+.++.        |++||+.+++........+..       .+..+.|+|          ||++|+..+.++       
T Consensus       506 ~~~dg~--------i~iw~~~~~~~~~~~~~~h~~-------~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-------  563 (615)
T 1pgu_A          506 GDVMGK--------ILLYDLQSREVKTSRWAFRTS-------KINAISWKPAEKGANEEEIEEDLVATGSLDT-------  563 (615)
T ss_dssp             EETTSC--------EEEEETTTTEEEECCSCCCSS-------CEEEEEECCCC------CCSCCEEEEEETTS-------
T ss_pred             cCCCCe--------EEEeeCCCCcceeEeecCCCC-------ceeEEEEcCccccccccccCCCEEEEEcCCC-------
Confidence            887765        999999887665433211344       678999999          999998887664       


Q ss_pred             CCCCCCCCCCcEEEEEcCCC--ceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          571 SWPNQFQPYGDLYVVKLDGS--GLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~~~~~--~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                                .|++|++..+  .+..+..+...+..++|+||++ +++....+
T Consensus       564 ----------~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~  605 (615)
T 1pgu_A          564 ----------NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA  605 (615)
T ss_dssp             ----------CEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS
T ss_pred             ----------cEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCc
Confidence                      7888888775  4666777777888999999999 87765443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.92  E-value=6.3e-23  Score=230.70  Aligned_cols=350  Identities=11%  Similarity=0.071  Sum_probs=227.3

Q ss_pred             ceEEEEccCCceEecccCCCc-c---C--CceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-
Q 039497          121 ALYSTDLKASKFTRLTPYGVV-D---Y--SPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-  193 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~-~---~--~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-  193 (642)
                      .|+++++.+++.+.+...... .   .  .++|||||++|||......+|...   ...++|+|++.+++.++++.... 
T Consensus        37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~---~~~~~~~~d~~~~~~~~l~~~~~~  113 (740)
T 4a5s_A           37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS---YTASYDIYDLNKRQLITEERIPNN  113 (740)
T ss_dssp             EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC---EEEEEEEEETTTTEECCSSCCCTT
T ss_pred             cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEc---cceEEEEEECCCCcEEEcccCCCc
Confidence            688889999987776543321 1   1  267899999999998765444322   35689999999999888766433 


Q ss_pred             -CcceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCc-------------------cccceeec
Q 039497          194 -GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVH-------------------CFTPAAFH  252 (642)
Q Consensus       194 -~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~Sp  252 (642)
                       ..++|||||+ ++|+.   ++  +||.++..++        ...+++..+..                   ...+.|||
T Consensus       114 ~~~~~~SPdG~~la~~~---~~--~i~~~~~~~~--------~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp  180 (740)
T 4a5s_A          114 TQWVTWSPVGHKLAYVW---NN--DIYVKIEPNL--------PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP  180 (740)
T ss_dssp             EEEEEECSSTTCEEEEE---TT--EEEEESSTTS--------CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT
T ss_pred             ceeeEECCCCCEEEEEE---CC--eEEEEECCCC--------ceEEEcCCCCccceecCcccccccchhcCCCcceEECC
Confidence             3689999995 66665   33  8999999888        66777654321                   12378999


Q ss_pred             CCcEEEEEEeccCCceeeEEEEEeecCCCC-----cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC---CC--
Q 039497          253 DGKRLAVATRRKNRNFRHIEIYDLTLNPNF-----HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS---PV--  322 (642)
Q Consensus       253 dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~--  322 (642)
                      ||++|+|...+..    .+.+|++......     ......+.++|..            +....+++..+..   ..  
T Consensus       181 Dg~~la~~~~d~~----~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~------------~~~~~l~v~d~~~~~~~~~~  244 (740)
T 4a5s_A          181 NGTFLAYAQFNDT----EVPLIEYSFYSDESLQYPKTVRVPYPKAGAV------------NPTVKFFVVNTDSLSSVTNA  244 (740)
T ss_dssp             TSSEEEEEEEECT----TCCEEEEEECCSTTCSSCEEEEEECCBTTSC------------CCEEEEEEEETTSCCSSSCC
T ss_pred             CCCEEEEEEEccc----CCceEEEEeecCCCCCCCcceeecCCCCcCc------------CCeeEEEEEECCCCCCCCcc
Confidence            9999999876543    3445554221111     0111122222211            1112334444433   21  


Q ss_pred             ceeEEee--------eCCCccEEcCCCCEEEEEecC-CCceeEEEEECCCCC-------eeEEee---cCC-----ceee
Q 039497          323 KELRMLR--------LNGSFPSFSPDGGLIVFNHDF-ELNAGIKIAKSDGSK-------RWTLIK---DRT-----AFYN  378 (642)
Q Consensus       323 ~~~~~~~--------~~~~~~~~spdg~~l~~~~~~-~~~~~l~~~d~~~~~-------~~~l~~---~~~-----~~~~  378 (642)
                      ...++..        .....+.|||||+.+++...+ .....|+++|+++++       ...+..   ...     ...+
T Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p  324 (740)
T 4a5s_A          245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEP  324 (740)
T ss_dssp             CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCC
T ss_pred             eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCc
Confidence            1111111        011356899999987776543 445689999999887       333322   222     3478


Q ss_pred             eeecCCCEEE-EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC-
Q 039497          379 SWSPTEKHVI-YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR-  456 (642)
Q Consensus       379 ~~spdg~~l~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~-  456 (642)
                      .|||||+.|+ +.+.      .++..+||.++.  +     ++     ..++|+.+. ..+..+ +++||++|+|.+.+ 
T Consensus       325 ~fspDG~~l~~~~s~------~~G~~~l~~~~~--~-----~~-----~~~~lT~g~-~~v~~~-~~~d~~~i~f~~~~~  384 (740)
T 4a5s_A          325 HFTLDGNSFYKIISN------EEGYRHICYFQI--D-----KK-----DCTFITKGT-WEVIGI-EALTSDYLYYISNEY  384 (740)
T ss_dssp             EECTTSSEEEEEEEC------TTSCEEEEEEET--T-----CS-----SCEESCCSS-SCEEEE-EEECSSEEEEEESCG
T ss_pred             eEcCCCCEEEEEEEc------CCCceEEEEEEC--C-----CC-----ceEecccCC-EEEEEE-EEEeCCEEEEEEecC
Confidence            9999999998 6663      355677888877  4     34     678888765 444433 44779999999987 


Q ss_pred             ---CCceeEEEEECCCCccccceeeCCCC----CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497          457 ---SGHKNLFVLDAVNGEFNGDIRQLTDG----PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       457 ---~g~~~l~~~d~~~g~~~~~~~~l~~~----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  529 (642)
                         .+..+||.+++++++.   .+.|+..    ......+.|||||+++++.....     ....+++++.++++...++
T Consensus       385 ~~~~~~~~ly~v~~~g~~~---~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~-----~~p~~~l~~~~~~~~~~~l  456 (740)
T 4a5s_A          385 KGMPGGRNLYKIQLIDYTK---VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGP-----GLPLYTLHSSVNDKGLRVL  456 (740)
T ss_dssp             GGCTTCBEEEEEETTEEEE---EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSB-----SSCEEEEEETTTTEEEEEE
T ss_pred             CCCCceeEEEEEECCCCCc---ceeeccccCCCCCceEEEEECCCCCEEEEEeCCC-----CCCEEEEEECCCCcEEEEe
Confidence               4567999999986653   2367643    23467789999999998887764     3457899999877765555


Q ss_pred             e
Q 039497          530 V  530 (642)
Q Consensus       530 ~  530 (642)
                      .
T Consensus       457 ~  457 (740)
T 4a5s_A          457 E  457 (740)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=5.1e-23  Score=214.81  Aligned_cols=316  Identities=18%  Similarity=0.234  Sum_probs=219.3

Q ss_pred             CCceeCCCCcEEE-EEecC--CCCCCCCCCCCeeeEEEEEe--cCCCce---eEeecCCC--cceEee------------
Q 039497          143 YSPSVSYSGKFIA-VASYE--SRPWPGEFHELNTDIVVFQE--SDPNKR---VIVCERGG--WPTWSG------------  200 (642)
Q Consensus       143 ~~~~~SPDG~~la-~~~~~--~~~~~~~~~~~~~~l~~~~~--~~g~~~---~l~~~~~~--~~~wsp------------  200 (642)
                      ..+.|+++|..++ ..+-.  .      .......|.+|++  .+++..   .+......  ..++++            
T Consensus        66 ~~~~w~~~g~~~~~~g~~~~~~------~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           66 QPAAWSALGIDAVVVGQVTPNP------DGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             CHHHHHTTTCCEEEEEEEEECT------TSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             CHHHHHhcCCCEEEEEEEEECC------CCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            4578999997655 33211  1      0001236899999  887733   12211111  123332            


Q ss_pred             ---CCeEEEEEecCCCc--eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          201 ---DSTIYFHRQADDGW--WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       201 ---dg~~~~~~~~~~g~--~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                         +++++++.....+.  ..|+.++.+++        ....+..+...+..++|||||++|+++..+.+  ...|++||
T Consensus       140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d  209 (415)
T 2hqs_A          140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESG--RSALVIQT  209 (415)
T ss_dssp             CCTTCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECTTSSEEEEEECTTS--SCEEEEEE
T ss_pred             CcCCCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCC--CcEEEEEE
Confidence               44777777432221  68999998876        66777766667888999999999999775432  34788888


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG  355 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  355 (642)
                      +...              +...+.                 ..          ......++|||||++|+|....++...
T Consensus       210 ~~tg--------------~~~~l~-----------------~~----------~~~~~~~~~spdg~~la~~~~~~g~~~  248 (415)
T 2hqs_A          210 LANG--------------AVRQVA-----------------SF----------PRHNGAPAFSPDGSKLAFALSKTGSLN  248 (415)
T ss_dssp             TTTC--------------CEEEEE-----------------CC----------SSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             CCCC--------------cEEEee-----------------cC----------CCcccCEEEcCCCCEEEEEEecCCCce
Confidence            7321              111100                 00          001125689999999999876666788


Q ss_pred             EEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497          356 IKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE  434 (642)
Q Consensus       356 l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  434 (642)
                      ||++|+.+++...+.. ...+..+.|+|||++|++.+..      ++...||.++.  +     ++     ....++...
T Consensus       249 i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~------~g~~~i~~~d~--~-----~~-----~~~~l~~~~  310 (415)
T 2hqs_A          249 LYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ------AGRPQVYKVNI--N-----GG-----APQRITWEG  310 (415)
T ss_dssp             EEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECT------TSSCEEEEEET--T-----SS-----CCEECCCSS
T ss_pred             EEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECC------CCCcEEEEEEC--C-----CC-----CEEEEecCC
Confidence            9999999988766655 4567889999999999999842      44556776665  3     23     455665554


Q ss_pred             CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCcee
Q 039497          435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS  514 (642)
Q Consensus       435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~  514 (642)
                       ..+..+.|||||++|++.+..++...|++||+.+++.    +.++... .+..++|+|||+.|++.+.+.     +...
T Consensus       311 -~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~----~~l~~~~-~~~~~~~spdg~~l~~~s~~~-----~~~~  379 (415)
T 2hqs_A          311 -SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLSSTF-LDETPSLAPNGTMVIYSSSQG-----MGSV  379 (415)
T ss_dssp             -SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE----EECCCSS-SCEEEEECTTSSEEEEEEEET-----TEEE
T ss_pred             -CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE----EEecCCC-CcCCeEEcCCCCEEEEEEcCC-----CccE
Confidence             5667799999999999998776778999999998884    7777654 678899999999999998765     3567


Q ss_pred             EEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCC
Q 039497          515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADG  553 (642)
Q Consensus       515 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg  553 (642)
                      ||++|++++..+.++.  ..+       .+..++|||--
T Consensus       380 l~~~d~~g~~~~~l~~--~~~-------~v~~~~~~~~~  409 (415)
T 2hqs_A          380 LNLVSTDGRFKARLPA--TDG-------QVKFPAWSPYL  409 (415)
T ss_dssp             EEEEETTSCCEEECCC--SSS-------EEEEEEECCCC
T ss_pred             EEEEECCCCcEEEeeC--CCC-------CCcCCcccccc
Confidence            9999999888877764  334       67899999854

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.91  E-value=1.5e-22  Score=230.69  Aligned_cols=426  Identities=13%  Similarity=0.038  Sum_probs=269.5

Q ss_pred             CceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCC
Q 039497           34 FHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPD  113 (642)
Q Consensus        34 ~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (642)
                      ...+.|+.|.+.....+|| |||++||..+ .+|...||.+.. +                                   
T Consensus         4 ~~~~~~~~h~~~v~~i~~s-p~~~~la~~~-~~g~v~iwd~~~-~-----------------------------------   45 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFH-PTEPWVLTTL-YSGRVEIWNYET-Q-----------------------------------   45 (814)
T ss_dssp             CCEEEEEEECSCEEEEEEC-SSSSEEEEEE-TTSEEEEEETTT-T-----------------------------------
T ss_pred             ccceeeecCCCceEEEEEC-CCCCEEEEEe-CCCEEEEEECCC-C-----------------------------------
Confidence            3457788999999999999 9999999654 467776776411 0                                   


Q ss_pred             cccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC
Q 039497          114 QIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG  193 (642)
Q Consensus       114 ~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~  193 (642)
                                      .....+..+......++|||||++||+...++            .|.+|++.+++.......+.
T Consensus        46 ----------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------------~i~vw~~~~~~~~~~~~~~~   97 (814)
T 3mkq_A           46 ----------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDF------------RIRVFNYNTGEKVVDFEAHP   97 (814)
T ss_dssp             ----------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTS------------EEEEEETTTCCEEEEEECCS
T ss_pred             ----------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCC------------eEEEEECCCCcEEEEEecCC
Confidence                            01112222333445689999999999988665            79999999888655544333


Q ss_pred             C---cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCcee
Q 039497          194 G---WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFR  269 (642)
Q Consensus       194 ~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~  269 (642)
                      .   .++|+||+..+++. ..+|...+|.++....        ....+..+...+..++|+| +|+.|++...++     
T Consensus        98 ~~v~~~~~s~~~~~l~~~-~~dg~i~vw~~~~~~~--------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----  163 (814)
T 3mkq_A           98 DYIRSIAVHPTKPYVLSG-SDDLTVKLWNWENNWA--------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-----  163 (814)
T ss_dssp             SCEEEEEECSSSSEEEEE-ETTSEEEEEEGGGTSE--------EEEEEECCSSCEEEEEEETTEEEEEEEEETTS-----
T ss_pred             CCEEEEEEeCCCCEEEEE-cCCCEEEEEECCCCce--------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC-----
Confidence            2   45999999877776 4577556665443222        3455566666788899999 888888865444     


Q ss_pred             eEEEEEeec---------CCCCcccCCeecC--CCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee---CCCcc
Q 039497          270 HIEIYDLTL---------NPNFHHYNPFVSA--NSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL---NGSFP  335 (642)
Q Consensus       270 ~i~~~d~~~---------~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  335 (642)
                      .+.+||+..         .....+....|+|  ++..|+....++.      ..  +..+.... .+.....   ....+
T Consensus       164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~------i~--~~d~~~~~-~~~~~~~~~~~v~~~  234 (814)
T 3mkq_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT------IK--IWDYQTKS-CVATLEGHMSNVSFA  234 (814)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE------EE--EEETTTTE-EEEEEECCSSCEEEE
T ss_pred             eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE------EE--EEECCCCc-EEEEEcCCCCCEEEE
Confidence            899999821         2224566778998  8988887643332      22  22322221 1111111   12456


Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEE--EEEEcCCCcccCCCeEEEEEEEee
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHV--IYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l--~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .|+|+|+.|+....   ...|.++++.+++......  ...+..+.|+|+|+.+  +...        +..+.+|.+.. 
T Consensus       235 ~~~~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-  302 (814)
T 3mkq_A          235 VFHPTLPIIISGSE---DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF--------DNGFTVLSLGN-  302 (814)
T ss_dssp             EECSSSSEEEEEET---TSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE--------TTEEEEEECSC-
T ss_pred             EEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe--------CCCEEEEEcCC-
Confidence            89999998887654   3678888998877555443  5678899999999854  3333        34444444321 


Q ss_pred             cCCC---CCCCC-----------------------------CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCc
Q 039497          412 LDPS---DDNNR-----------------------------EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH  459 (642)
Q Consensus       412 ~~~~---~~~~~-----------------------------~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~  459 (642)
                       ...   ..+.+                             .........+.... ..+..++|||||++|++.+.    
T Consensus       303 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~la~~~~----  376 (814)
T 3mkq_A          303 -DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD-VFPQSLAHSPNGRFVTVVGD----  376 (814)
T ss_dssp             -CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS-SCCSEEEECTTSSEEEEEET----
T ss_pred             -CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCc-cCCceeEECCCCCEEEEecC----
Confidence             000   00000                             00000111112222 34567899999999998873    


Q ss_pred             eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV  539 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  539 (642)
                      ..+++|++.....    ..    ...+..++|||||++|++...++.        |.+|+.-       .  +...    
T Consensus       377 ~~~~i~~~~~~~~----~~----~~~i~~~~~spdg~~la~~~~~g~--------v~l~~~~-------~--~~~~----  427 (814)
T 3mkq_A          377 GEYVIYTALAWRN----KA----FGKCQDFVWGPDSNSYALIDETGQ--------IKYYKNF-------K--EVTS----  427 (814)
T ss_dssp             TEEEEEETTTTEE----EE----EEECSEEEECTTSSCEEEECTTCC--------EEEEETT-------E--ECTT----
T ss_pred             CEEEEEECccccc----cC----CCceEEEEEeCCCCeEEEEeCCCc--------EEEEECC-------C--Cccc----
Confidence            3688888764332    21    134567899999999988876653        7777421       1  1112    


Q ss_pred             ccccccceEEcCCC---CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEe
Q 039497          540 DRERINHVCFSADG---EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLG  616 (642)
Q Consensus       540 ~~~~~~~~~~S~Dg---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~  616 (642)
                         .+..+.|||||   +.|++...++                 .|++||+..+++.........  .+.|||||++++.
T Consensus       428 ---~v~~~~~s~dg~~~~~l~~~~~d~-----------------~v~~~d~~~~~~~~~~~~~~~--~v~~s~dg~~la~  485 (814)
T 3mkq_A          428 ---WSVPMHSAIDRLFSGALLGVKSDG-----------------FVYFFDWDNGTLVRRIDVNAK--DVIWSDNGELVMI  485 (814)
T ss_dssp             ---CCCCCSSCCCEEECSSSEEEEETT-----------------EEEEECTTTCCEEEEESSCEE--EEEECTTSSEEEE
T ss_pred             ---eEEcCCcCccceecceEEEEecCC-----------------EEEEEECCcCcEEEEEecCCC--EEEEcCCCCEEEE
Confidence               34678899998   5677766553                 799999887765433332222  8899999999876


Q ss_pred             e
Q 039497          617 K  617 (642)
Q Consensus       617 ~  617 (642)
                      .
T Consensus       486 ~  486 (814)
T 3mkq_A          486 V  486 (814)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.7e-22  Score=226.89  Aligned_cols=360  Identities=13%  Similarity=0.104  Sum_probs=226.1

Q ss_pred             CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC------CCcceEeeCCeEEEEEecCC----
Q 039497          143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER------GGWPTWSGDSTIYFHRQADD----  212 (642)
Q Consensus       143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~------~~~~~wspdg~~~~~~~~~~----  212 (642)
                      ..++|||||++++ ...+.            .|++|++.+++.++++...      ...++|||||+.++......    
T Consensus        19 ~~~~~s~dg~~~~-~~~d~------------~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~   85 (719)
T 1z68_A           19 FFPNWISGQEYLH-QSADN------------NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR   85 (719)
T ss_dssp             CCCEESSSSEEEE-ECTTS------------CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSS
T ss_pred             CccEECCCCeEEE-EcCCC------------CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEE
Confidence            4689999996544 43322            7999999999988887643      34679999996544432211    


Q ss_pred             --CceEEEEEecCCCcccccCCccc---eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCC------C
Q 039497          213 --GWWSIFRVSFPENLEFLGFPIAP---TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP------N  281 (642)
Q Consensus       213 --g~~~l~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~------~  281 (642)
                        +...|+.+++.++        +.   .++.   ..+..++|||||++|+|+..      ..|++|++..+.      .
T Consensus        86 ~s~~~~i~~~d~~~g--------~~~~~~~l~---~~~~~~~~SPDG~~la~~~~------~~i~~~~~~~g~~~~l~~~  148 (719)
T 1z68_A           86 YSYTATYYIYDLSNG--------EFVRGNELP---RPIQYLCWSPVGSKLAYVYQ------NNIYLKQRPGDPPFQITFN  148 (719)
T ss_dssp             SCEEEEEEEEETTTT--------EECCSSCCC---SSBCCEEECSSTTCEEEEET------TEEEEESSTTSCCEECCCC
T ss_pred             eecceEEEEEECCCC--------ccccceecC---cccccceECCCCCEEEEEEC------CeEEEEeCCCCCcEEEecC
Confidence              1248999999888        33   3332   24677999999999999742      279999983211      1


Q ss_pred             C--------------------cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCC
Q 039497          282 F--------------------HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDG  341 (642)
Q Consensus       282 ~--------------------~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  341 (642)
                      .                    ....+.|||||++|+|.+.+....    ....+......... ..     ....+...|
T Consensus       149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~----~~~~~~~~~~~~~~-~~-----~~~~yp~~g  218 (719)
T 1z68_A          149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDI----PVIAYSYYGDEQYP-RT-----INIPYPKAG  218 (719)
T ss_dssp             CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTS----CEEEEEECCSSSSC-EE-----EEEECCBTT
T ss_pred             CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCC----ceEEeeccCCCCCc-cc-----eeecCCCCC
Confidence            1                    114789999999999987654321    11111111110000 00     011222223


Q ss_pred             CEEEEEecCCCceeEEEEECCCCCee---EEee-------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE--
Q 039497          342 GLIVFNHDFELNAGIKIAKSDGSKRW---TLIK-------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS--  409 (642)
Q Consensus       342 ~~l~~~~~~~~~~~l~~~d~~~~~~~---~l~~-------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~--  409 (642)
                      .       ......|+++|+++++..   ++..       ...+..+.||||++.++....     .......|+.++  
T Consensus       219 ~-------~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~-----~~~~~~~l~~~d~~  286 (719)
T 1z68_A          219 A-------KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK-----RVQNVSVLSICDFR  286 (719)
T ss_dssp             S-------CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE-----SSTTEEEEEEEEEC
T ss_pred             C-------CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec-----cccCeEEEEEEccc
Confidence            2       133468999999987642   3321       234678999999764444332     123445566665  


Q ss_pred             --eecCCCCCCCCCccccceEEcc----ccCCCCcc-----CcEECCCCCeEEE-EeCCCCceeEEEEECCCCcccccee
Q 039497          410 --FQLDPSDDNNREEIPCDVKILT----KEETGNNA-----FPSCSPDGKFLVF-RSGRSGHKNLFVLDAVNGEFNGDIR  477 (642)
Q Consensus       410 --~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~-----~~~~SpDg~~l~~-~~~~~g~~~l~~~d~~~g~~~~~~~  477 (642)
                        .  .     ++     ....+.    ......+.     .+.|||||+.|++ .+.+++..+||++++.+++.    +
T Consensus       287 ~~~--~-----~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~----~  350 (719)
T 1z68_A          287 EDW--Q-----TW-----DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA----I  350 (719)
T ss_dssp             SSS--S-----SE-----ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC----E
T ss_pred             CCC--C-----CC-----ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce----E
Confidence              4  2     22     233333    12213344     7899999999888 45667888999999988774    8


Q ss_pred             eCCCCCCcccceeEecCCCEEEEEecC--CCCCCCCceeEEEEeCCCC--ceEEeeecC--CCCCCCcccccccceEEcC
Q 039497          478 QLTDGPWIDTMPSWSPKGDLIAFSSNR--HNPDNVEAFSLYVIKPDGS--GLRRIHVAG--PEGSGDVDRERINHVCFSA  551 (642)
Q Consensus       478 ~l~~~~~~~~~~~~spdG~~l~~~~~~--~~~~~~~~~~l~~~d~~~~--~~~~l~~~~--~~~~~~~~~~~~~~~~~S~  551 (642)
                      .|+.....+..+.++ ||+.|+|.+..  ..   ....+||.++++++  +.+.++..-  ...       .+..+.|||
T Consensus       351 ~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~---~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~-------~~~~~~~s~  419 (719)
T 1z68_A          351 QITSGKWEAINIFRV-TQDSLFYSSNEFEEY---PGRRNIYRISIGSYPPSKKCVTCHLRKERC-------QYYTASFSD  419 (719)
T ss_dssp             ECSCSSSCEEEEEEE-CSSEEEEEESCGGGC---TTCBEEEEEECSSSSCCEEESSTTTTTTTB-------CBEEEEECG
T ss_pred             ecccCceEEEEEEEE-eCCEEEEEEecCCCC---CceEEEEEEeCCCCCCCceeccCccCCCCC-------ceEEEEECC
Confidence            888776666777777 99999999876  21   15678999998766  345554310  111       345789999


Q ss_pred             CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497          552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL  595 (642)
Q Consensus       552 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  595 (642)
                      ||++|++.......              ..++++++.+++..++
T Consensus       420 dg~~l~~~~s~~~~--------------p~~~l~d~~~g~~~~~  449 (719)
T 1z68_A          420 YAKYYALVCYGPGI--------------PISTLHDGRTDQEIKI  449 (719)
T ss_dssp             GGSSEEEEECCBSS--------------CEEEEECSSSCCEEEE
T ss_pred             CCCEEEEEcCCCCC--------------CeEEEEECCCCCEEEE
Confidence            99999987654332              2678888876664433

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=5.1e-21  Score=214.51  Aligned_cols=355  Identities=16%  Similarity=0.189  Sum_probs=227.8

Q ss_pred             CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCc--eeEeecC-------------------CCcceEeeC
Q 039497          143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNK--RVIVCER-------------------GGWPTWSGD  201 (642)
Q Consensus       143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~l~~~~-------------------~~~~~wspd  201 (642)
                      ..++|+  |+.+++... .          +  | +|++.+|+.  +.+....                   -..++||||
T Consensus        29 ~~~~w~--g~~~~~~~~-~----------~--i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd   92 (706)
T 2z3z_A           29 VGLQWM--GDNYVFIEG-D----------D--L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR   92 (706)
T ss_dssp             TTCEEE--TTEEEEEET-T----------E--E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT
T ss_pred             CCCcCc--CCeEEEEeC-C----------c--E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC
Confidence            447899  666666542 2          2  7 999999988  6665532                   124589999


Q ss_pred             CeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec---
Q 039497          202 STIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL---  278 (642)
Q Consensus       202 g~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~---  278 (642)
                      +.+++..   ++  .|+.+++.++        +..++......+..++|||||++|+++. .     ..|++||+..   
T Consensus        93 ~~~~~~~---~~--~i~~~d~~~~--------~~~~l~~~~~~~~~~~~SpdG~~la~~~-~-----~~i~v~~~~~~~~  153 (706)
T 2z3z_A           93 GLVVLFT---QG--GLVGFDMLAR--------KVTYLFDTNEETASLDFSPVGDRVAYVR-N-----HNLYIARGGKLGE  153 (706)
T ss_dssp             TEEEEEE---TT--EEEEEETTTT--------EEEEEECCTTCCTTCEECTTSSEEEEEE-T-----TEEEEEECBCTTS
T ss_pred             CeEEEEE---CC--EEEEEECCCC--------ceEEccCCcccccCCcCCCCCCEEEEEE-C-----CeEEEEecCcccc
Confidence            6677665   24  8888998887        5566666655678899999999999953 2     3799999865   


Q ss_pred             --CCC------C-c---------------ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCc
Q 039497          279 --NPN------F-H---------------HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSF  334 (642)
Q Consensus       279 --~~~------~-~---------------~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (642)
                        ...      . .               ...+.|||||++|++...+....    ....+.............      
T Consensus       154 ~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~----~~~~~~~~~~~~~~~~~~------  223 (706)
T 2z3z_A          154 GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMV----KPTPIVDYHPLEAESKPL------  223 (706)
T ss_dssp             CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTS----CCEEEEECCSSSCEEEEE------
T ss_pred             cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCC----ceEEeeccCCCCCceEEe------
Confidence              321      1 1               25678999999999987654421    111121111111111100      


Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                       .+...|       .......|+++|+++++...+..    ...+..+.|||||++|++....    .......|+.++.
T Consensus       224 -~y~~~g-------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~~~~~v~~~d~  291 (706)
T 2z3z_A          224 -YYPMAG-------TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN----RAQNECKVNAYDA  291 (706)
T ss_dssp             -CCCBTT-------SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC----TTSCEEEEEEEET
T ss_pred             -eCCCCC-------CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC----CCCCeeEEEEEEC
Confidence             111111       11345789999999988666653    2346789999999999997642    1223345555544


Q ss_pred             ecCCCCCCCCCccccceEEcccc-CCC---CccCcEECC--CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497          411 QLDPSDDNNREEIPCDVKILTKE-ETG---NNAFPSCSP--DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~-~~~---~~~~~~~Sp--Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                        .     ++.    ..+.+... ...   ....+.|||  ||++| +.+.+++..+||.++..++.    ++.|+.+..
T Consensus       292 --~-----~g~----~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~g~~~l~~~~~~~~~----~~~l~~~~~  355 (706)
T 2z3z_A          292 --E-----TGR----FVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRDGWNHLYLYDTTGRL----IRQVTKGEW  355 (706)
T ss_dssp             --T-----TCC----EEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTTSSCEEEEEETTSCE----EEECCCSSS
T ss_pred             --C-----CCc----eeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccCCccEEEEEECCCCE----EEecCCCCe
Confidence              2     221    22223211 101   125689999  99854 56666777899999976555    588887766


Q ss_pred             cccc-eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          485 IDTM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       485 ~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      .+.. +.|||||++|++.+....+   ....||++|+++++.+.++..   .       .+..+.|||||++|++.....
T Consensus       356 ~v~~~~~~spdg~~l~~~~~~~~~---~~~~l~~~d~~~~~~~~l~~~---~-------~~~~~~~spdg~~l~~~~~~~  422 (706)
T 2z3z_A          356 EVTNFAGFDPKGTRLYFESTEASP---LERHFYCIDIKGGKTKDLTPE---S-------GMHRTQLSPDGSAIIDIFQSP  422 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEESSSCT---TCBEEEEEETTCCCCEESCCS---S-------SEEEEEECTTSSEEEEEEECS
T ss_pred             EEEeeeEEcCCCCEEEEEecCCCC---ceEEEEEEEcCCCCceeccCC---C-------ceEEEEECCCCCEEEEEecCC
Confidence            6655 7999999999999876421   356899999998887777632   2       356799999999999886654


Q ss_pred             CcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497          564 AVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                      ..             ...||++++++++.+.++
T Consensus       423 ~~-------------p~~i~l~d~~~~~~~~~~  442 (706)
T 2z3z_A          423 TV-------------PRKVTVTNIGKGSHTLLE  442 (706)
T ss_dssp             SC-------------SCEEEEEESSSCEEEEEE
T ss_pred             CC-------------CcEEEEEECCCCeEeecc
Confidence            32             237999999887744444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.90  E-value=2.2e-20  Score=205.50  Aligned_cols=430  Identities=11%  Similarity=0.025  Sum_probs=275.0

Q ss_pred             eeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCc-cccccc
Q 039497           19 FDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSL-FHDRPV   97 (642)
Q Consensus        19 ~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~-~~~~~~   97 (642)
                      +.|++.+ .+     .....+..|........|+ |+|+.++++...+|...+|.... ++....+....... .-....
T Consensus       142 ~~v~~~d-~~-----~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~  213 (615)
T 1pgu_A          142 GVFISWD-SG-----NSLGEVSGHSQRINACHLK-QSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVE  213 (615)
T ss_dssp             EEEEETT-TC-----CEEEECCSCSSCEEEEEEC-SSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEE
T ss_pred             cEEEEEE-CC-----CcceeeecCCccEEEEEEC-CCCCcEEEEEeCCCcEEEEeCCC-cceeeeecccCCCCceEEEEE
Confidence            6788887 44     6678888999999999999 99985555666788888887522 21111121111100 001122


Q ss_pred             c--C-CCEEEEEEeccCCCcccccccceEEEEccCCceEecc-----cCCCccCCceeCCCCcEEEEEecCCCCCCCCCC
Q 039497           98 A--R-NNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLT-----PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFH  169 (642)
Q Consensus        98 ~--~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt-----~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~  169 (642)
                      +  + ++.++... .+         +.|.++++.+++.....     .+........|+ ||++|+....+.        
T Consensus       214 ~~~~~~~~l~~~~-~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~--------  274 (615)
T 1pgu_A          214 FSPDSGEFVITVG-SD---------RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA--------  274 (615)
T ss_dssp             ECSTTCCEEEEEE-TT---------CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS--------
T ss_pred             ECCCCCCEEEEEe-CC---------CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC--------
Confidence            2  4 44444433 32         25777788877765433     444555678899 999999887655        


Q ss_pred             CCeeeEEEEEecCCCceeEeecCC-----C--cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCC
Q 039497          170 ELNTDIVVFQESDPNKRVIVCERG-----G--WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPG  242 (642)
Q Consensus       170 ~~~~~l~~~~~~~g~~~~l~~~~~-----~--~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~  242 (642)
                          .|.+|++.+++.........     .  ...|+ ++..+++. ..+|.  |..++..++.       ....+..+.
T Consensus       275 ----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~-~~~g~--i~~~d~~~~~-------~~~~~~~~~  339 (615)
T 1pgu_A          275 ----TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISL-SLDGT--LNFYELGHDE-------VLKTISGHN  339 (615)
T ss_dssp             ----EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEE-ETTSC--EEEEETTEEE-------EEEEECCCS
T ss_pred             ----cEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEE-ECCCC--EEEEECCCCc-------EEEEEeCCC
Confidence                79999999877555444321     1  23565 66666666 45674  4555555542       445566666


Q ss_pred             CccccceeecCCcEEEEEEeccCCceeeEEEEEee---cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc
Q 039497          243 VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT---LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA  319 (642)
Q Consensus       243 ~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~  319 (642)
                      ..+..++| |+   |+....++     .+.+|++.   ..+...+....| +++..|+....++.      ..+|-....
T Consensus       340 ~~v~~~~~-~~---l~~~~~dg-----~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~------i~~~~~~~~  403 (615)
T 1pgu_A          340 KGITALTV-NP---LISGSYDG-----RIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDT------LKVNGITKH  403 (615)
T ss_dssp             SCEEEEET-TT---TEEEETTS-----CEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTE------EEETTEEEE
T ss_pred             CCEEEEEe-cC---cEEECCCC-----eEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCC------EEEEEcccC
Confidence            67778888 87   55544333     77787753   334444555666 55666665543332      122211100


Q ss_pred             CCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCccc
Q 039497          320 SPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQS  398 (642)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~  398 (642)
                      ....       ......++|+|+.++..    ....+.++++..++...... ...+..+.|+  ++.|+....      
T Consensus       404 ~~~~-------~~~~~~~s~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~------  464 (615)
T 1pgu_A          404 EFGS-------QPKVASANNDGFTAVLT----NDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLE------  464 (615)
T ss_dssp             ECSS-------CEEEEEECSSSEEEEEE----TTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEET------
T ss_pred             cccC-------CceEEEEcCCCCEEEEe----CCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeec------
Confidence            0000       12345889999866664    34678888987666544433 6677888888  888887762      


Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCccccce--EEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccce
Q 039497          399 ERATVQIARVSFQLDPSDDNNREEIPCDV--KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI  476 (642)
Q Consensus       399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~  476 (642)
                      .++.+++|++..         +     ..  ..+..+. ..+..+.|||||++|+..+.+   ..|.+|++.+++.   +
T Consensus       465 ~d~~i~~~~~~~---------~-----~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~d---g~i~iw~~~~~~~---~  523 (615)
T 1pgu_A          465 EGNTIQVFKLSD---------L-----EVSFDLKTPLR-AKPSYISISPSETYIAAGDVM---GKILLYDLQSREV---K  523 (615)
T ss_dssp             TTSCEEEEETTE---------E-----EEEEECSSCCS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEE---E
T ss_pred             CCCeEEEEECCC---------c-----cccccccCCcc-CceEEEEECCCCCEEEEcCCC---CeEEEeeCCCCcc---e
Confidence            157889998854         1     22  3334444 677889999999999888743   4799999998886   5


Q ss_pred             eeCCC-CCCcccceeEec----------CCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCCCCCCCcccccc
Q 039497          477 RQLTD-GPWIDTMPSWSP----------KGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERI  544 (642)
Q Consensus       477 ~~l~~-~~~~~~~~~~sp----------dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~  544 (642)
                      ..+.. +...+..++|+|          ||++|+..+.++.        |++||+.++ +..... ..+..       .+
T Consensus       524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~--------i~iw~~~~~~~~~~~~-~~h~~-------~v  587 (615)
T 1pgu_A          524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN--------IFIYSVKRPMKIIKAL-NAHKD-------GV  587 (615)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC--------EEEEESSCTTCCEEET-TSSTT-------CE
T ss_pred             eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCc--------EEEEECCCCceechhh-hcCcc-------ce
Confidence            55655 667788899999          9999999887765        999999886 333222 23444       67


Q ss_pred             cceEEcCCCCEEEEEEecC
Q 039497          545 NHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       545 ~~~~~S~Dg~~l~~~~~~~  563 (642)
                      ..+.|+|||+ |+..+.++
T Consensus       588 ~~l~~s~~~~-l~s~~~d~  605 (615)
T 1pgu_A          588 NNLLWETPST-LVSSGADA  605 (615)
T ss_dssp             EEEEEEETTE-EEEEETTS
T ss_pred             EEEEEcCCCC-eEEecCCc
Confidence            8999999999 77766554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.89  E-value=5.8e-21  Score=217.66  Aligned_cols=421  Identities=10%  Similarity=0.006  Sum_probs=265.4

Q ss_pred             eeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccccc
Q 039497           18 GFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPV   97 (642)
Q Consensus        18 ~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~   97 (642)
                      .|.|.+.+...    +....+++.|.+.+....|| |||++||..+. +|...||.+..+. ....+.......  ....
T Consensus        34 ~g~v~iwd~~~----~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~-dg~i~vw~~~~~~-~~~~~~~~~~~v--~~~~  104 (814)
T 3mkq_A           34 SGRVEIWNYET----QVEVRSIQVTETPVRAGKFI-ARKNWIIVGSD-DFRIRVFNYNTGE-KVVDFEAHPDYI--RSIA  104 (814)
T ss_dssp             TSEEEEEETTT----TEEEEEEECCSSCEEEEEEE-GGGTEEEEEET-TSEEEEEETTTCC-EEEEEECCSSCE--EEEE
T ss_pred             CCEEEEEECCC----CceEEEEecCCCcEEEEEEe-CCCCEEEEEeC-CCeEEEEECCCCc-EEEEEecCCCCE--EEEE
Confidence            56677777654    14567888999999999999 99999996654 7888888874332 111111111111  1122


Q ss_pred             c--CCCEEEEEEeccCCCcccccccceEEEEccCC-c-eEecccCCCccCCceeCC-CCcEEEEEecCCCCCCCCCCCCe
Q 039497           98 A--RNNKLFFISAHEQPDQIFKSWSALYSTDLKAS-K-FTRLTPYGVVDYSPSVSY-SGKFIAVASYESRPWPGEFHELN  172 (642)
Q Consensus        98 ~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~  172 (642)
                      +  ++..|+..+..          +.|.++++.++ . ...+..+.......+|+| ||+.|++...++           
T Consensus       105 ~s~~~~~l~~~~~d----------g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----------  163 (814)
T 3mkq_A          105 VHPTKPYVLSGSDD----------LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-----------  163 (814)
T ss_dssp             ECSSSSEEEEEETT----------SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-----------
T ss_pred             EeCCCCEEEEEcCC----------CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC-----------
Confidence            3  45555544432          14555577765 3 344555556667789999 899999887665           


Q ss_pred             eeEEEEEecCCCceeEeec-C-C--CcceEee--CCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccc
Q 039497          173 TDIVVFQESDPNKRVIVCE-R-G--GWPTWSG--DSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCF  246 (642)
Q Consensus       173 ~~l~~~~~~~g~~~~l~~~-~-~--~~~~wsp--dg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  246 (642)
                       .|.+|++.++........ . .  ..+.|+|  ++.++++. ..+|  .|..++..++.       ....+..+...+.
T Consensus       164 -~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg--~i~~~d~~~~~-------~~~~~~~~~~~v~  232 (814)
T 3mkq_A          164 -TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA-SDDL--TIKIWDYQTKS-------CVATLEGHMSNVS  232 (814)
T ss_dssp             -EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE-CTTS--EEEEEETTTTE-------EEEEEECCSSCEE
T ss_pred             -eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE-eCCC--EEEEEECCCCc-------EEEEEcCCCCCEE
Confidence             799999988775544432 2 2  3569998  88888877 4567  55566666663       4455555666778


Q ss_pred             cceeecCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeec
Q 039497          247 TPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPV  318 (642)
Q Consensus       247 ~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~  318 (642)
                      .++|+|+|+.|+....++     .+.+||+..        .+...+..++|+|+|+.+++.......     ..  +..+
T Consensus       233 ~~~~~~~~~~l~~~~~dg-----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~  300 (814)
T 3mkq_A          233 FAVFHPTLPIIISGSEDG-----TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-----FT--VLSL  300 (814)
T ss_dssp             EEEECSSSSEEEEEETTS-----CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTE-----EE--EEEC
T ss_pred             EEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCC-----EE--EEEc
Confidence            889999999888865444     799999832        233455677899999864333222221     11  1111


Q ss_pred             cCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC------CCe-----eEEee-cCCceeeeeecCCCE
Q 039497          319 ASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG------SKR-----WTLIK-DRTAFYNSWSPTEKH  386 (642)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~------~~~-----~~l~~-~~~~~~~~~spdg~~  386 (642)
                      ..          ......++|+|+.++..........++......      +..     ..+.. ...+..+.|+|||+.
T Consensus       301 ~~----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  370 (814)
T 3mkq_A          301 GN----------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRF  370 (814)
T ss_dssp             SC----------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSE
T ss_pred             CC----------CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCE
Confidence            11          112447899998777654433344555544331      111     11111 335678999999999


Q ss_pred             EEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEE
Q 039497          387 VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLD  466 (642)
Q Consensus       387 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d  466 (642)
                      |++..        ++.+.+|.+..         .     ...  .  . +.+..++|||||+++++.... +  .|.+|+
T Consensus       371 la~~~--------~~~~~i~~~~~---------~-----~~~--~--~-~~i~~~~~spdg~~la~~~~~-g--~v~l~~  420 (814)
T 3mkq_A          371 VTVVG--------DGEYVIYTALA---------W-----RNK--A--F-GKCQDFVWGPDSNSYALIDET-G--QIKYYK  420 (814)
T ss_dssp             EEEEE--------TTEEEEEETTT---------T-----EEE--E--E-EECSEEEECTTSSCEEEECTT-C--CEEEEE
T ss_pred             EEEec--------CCEEEEEECcc---------c-----ccc--C--C-CceEEEEEeCCCCeEEEEeCC-C--cEEEEE
Confidence            99887        56788888532         1     111  1  1 345678999999999877632 3  566665


Q ss_pred             CCCCccccceeeCCCCCCcccceeEecCC---CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccc
Q 039497          467 AVNGEFNGDIRQLTDGPWIDTMPSWSPKG---DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER  543 (642)
Q Consensus       467 ~~~g~~~~~~~~l~~~~~~~~~~~~spdG---~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~  543 (642)
                      .-.+.           ...+..+.|+|||   +.|++.+.++.        |++||+.+++.......           .
T Consensus       421 ~~~~~-----------~~~v~~~~~s~dg~~~~~l~~~~~d~~--------v~~~d~~~~~~~~~~~~-----------~  470 (814)
T 3mkq_A          421 NFKEV-----------TSWSVPMHSAIDRLFSGALLGVKSDGF--------VYFFDWDNGTLVRRIDV-----------N  470 (814)
T ss_dssp             TTEEC-----------TTCCCCCSSCCCEEECSSSEEEEETTE--------EEEECTTTCCEEEEESS-----------C
T ss_pred             CCCCc-----------cceEEcCCcCccceecceEEEEecCCE--------EEEEECCcCcEEEEEec-----------C
Confidence            43222           1234567899998   56777666553        99999988776544321           1


Q ss_pred             ccceEEcCCCCEEEEEEe
Q 039497          544 INHVCFSADGEWLLFTAN  561 (642)
Q Consensus       544 ~~~~~~S~Dg~~l~~~~~  561 (642)
                      ...+.|||||++|++.+.
T Consensus       471 ~~~v~~s~dg~~la~~~~  488 (814)
T 3mkq_A          471 AKDVIWSDNGELVMIVNT  488 (814)
T ss_dssp             EEEEEECTTSSEEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEEc
Confidence            237999999999998853

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=2.4e-20  Score=209.02  Aligned_cols=338  Identities=13%  Similarity=0.046  Sum_probs=207.5

Q ss_pred             eEEEEccCCce--EecccCC-----------------CccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecC
Q 039497          122 LYSTDLKASKF--TRLTPYG-----------------VVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESD  182 (642)
Q Consensus       122 l~~~~~~~~~~--~~lt~~~-----------------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~  182 (642)
                      | ++++.+|+.  +.|....                 .....++|||| ++|++..+             ..|++|++.+
T Consensus        46 i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~-------------~~i~~~d~~~  110 (706)
T 2z3z_A           46 L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQ-------------GGLVGFDMLA  110 (706)
T ss_dssp             E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEET-------------TEEEEEETTT
T ss_pred             E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEEC-------------CEEEEEECCC
Confidence            6 778888887  6665432                 22456889999 88888754             2799999999


Q ss_pred             CCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCC-----CcccccCCccceeeCCCCCc-----------
Q 039497          183 PNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPE-----NLEFLGFPIAPTRVTPPGVH-----------  244 (642)
Q Consensus       183 g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~~~~-----------  244 (642)
                      ++..+++....  ..++|||||+.++...  ++  +|+.+++.+     +        +..+++..+..           
T Consensus       111 ~~~~~l~~~~~~~~~~~~SpdG~~la~~~--~~--~i~v~~~~~~~~~~g--------~~~~~~~~~~~~~~~g~~~~~e  178 (706)
T 2z3z_A          111 RKVTYLFDTNEETASLDFSPVGDRVAYVR--NH--NLYIARGGKLGEGMS--------RAIAVTIDGTETLVYGQAVHQR  178 (706)
T ss_dssp             TEEEEEECCTTCCTTCEECTTSSEEEEEE--TT--EEEEEECBCTTSCCC--------CCEESCSCCBTTEEESSCCGGG
T ss_pred             CceEEccCCcccccCCcCCCCCCEEEEEE--CC--eEEEEecCcccccCC--------CcEEeccCCCCCeEcccchhhh
Confidence            98877776433  4679999996444442  34  788888887     6        55665554322           


Q ss_pred             ----cccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497          245 ----CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS  320 (642)
Q Consensus       245 ----~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~  320 (642)
                          +..++|||||++|++...+... ...+.+.+....             ...+.-.........+....+++..+..
T Consensus       179 e~~~~~~~~~SpDg~~la~~~~d~~~-~~~~~~~~~~~~-------------~~~~~~~~y~~~g~~~~~~~l~~~d~~~  244 (706)
T 2z3z_A          179 EFGIEKGTFWSPKGSCLAFYRMDQSM-VKPTPIVDYHPL-------------EAESKPLYYPMAGTPSHHVTVGIYHLAT  244 (706)
T ss_dssp             CTTCCCSEEECTTSSEEEEEEEECTT-SCCEEEEECCSS-------------SCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred             hcCCCceEEECCCCCEEEEEEECCCC-CceEEeeccCCC-------------CCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence                3678999999999998643321 112222222100             0000000000000000011122222222


Q ss_pred             CCc-eeEEeee---CCCccEEcCCCCEEEEEecC--CCceeEEEEECCCC-CeeEEee--c-C---Cceeeeeec--CCC
Q 039497          321 PVK-ELRMLRL---NGSFPSFSPDGGLIVFNHDF--ELNAGIKIAKSDGS-KRWTLIK--D-R---TAFYNSWSP--TEK  385 (642)
Q Consensus       321 ~~~-~~~~~~~---~~~~~~~spdg~~l~~~~~~--~~~~~l~~~d~~~~-~~~~l~~--~-~---~~~~~~~sp--dg~  385 (642)
                      ... .+.....   ....+.|||||++|++....  .....|+++|++++ ..+.+..  . .   .+..+.|+|  ||+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~  324 (706)
T 2z3z_A          245 GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ  324 (706)
T ss_dssp             TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE
T ss_pred             CceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE
Confidence            110 0000000   01357899999999986532  33468999999988 5455443  1 1   135689999  998


Q ss_pred             EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccC-cEECCCCCeEEEEeCCCC--ceeE
Q 039497          386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF-PSCSPDGKFLVFRSGRSG--HKNL  462 (642)
Q Consensus       386 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~SpDg~~l~~~~~~~g--~~~l  462 (642)
                      .|+...       .++..+||.++.  +     ++     ..+.++.+. ..+.. ++|||||++|++.+..++  ...|
T Consensus       325 ~l~~~~-------~~g~~~l~~~~~--~-----~~-----~~~~l~~~~-~~v~~~~~~spdg~~l~~~~~~~~~~~~~l  384 (706)
T 2z3z_A          325 FIWQSR-------RDGWNHLYLYDT--T-----GR-----LIRQVTKGE-WEVTNFAGFDPKGTRLYFESTEASPLERHF  384 (706)
T ss_dssp             EEEEEC-------TTSSCEEEEEET--T-----SC-----EEEECCCSS-SCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred             EEEEEc-------cCCccEEEEEEC--C-----CC-----EEEecCCCC-eEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence            554443       256788999885  3     33     567777655 44544 799999999999987655  4699


Q ss_pred             EEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497          463 FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       463 ~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  529 (642)
                      |.+++.+++.    +.++.. ..+..++|||||++|++......    ....|+++|+++++.+.++
T Consensus       385 ~~~d~~~~~~----~~l~~~-~~~~~~~~spdg~~l~~~~~~~~----~p~~i~l~d~~~~~~~~~~  442 (706)
T 2z3z_A          385 YCIDIKGGKT----KDLTPE-SGMHRTQLSPDGSAIIDIFQSPT----VPRKVTVTNIGKGSHTLLE  442 (706)
T ss_dssp             EEEETTCCCC----EESCCS-SSEEEEEECTTSSEEEEEEECSS----CSCEEEEEESSSCEEEEEE
T ss_pred             EEEEcCCCCc----eeccCC-CceEEEEECCCCCEEEEEecCCC----CCcEEEEEECCCCeEeecc
Confidence            9999998874    777743 44677899999999998866543    4567999999888744333

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=4.2e-21  Score=215.66  Aligned_cols=350  Identities=11%  Similarity=0.027  Sum_probs=215.6

Q ss_pred             ceEEEEccCCceEecccCCCc----cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCc---eeEeecCC
Q 039497          121 ALYSTDLKASKFTRLTPYGVV----DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNK---RVIVCERG  193 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~----~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~l~~~~~  193 (642)
                      .||++++.+++.++++.+...    ...++|||||++|||.......|..   .....|++|++++++.   +++. ...
T Consensus        37 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~---s~~~~i~~~d~~~g~~~~~~~l~-~~~  112 (719)
T 1z68_A           37 NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRY---SYTATYYIYDLSNGEFVRGNELP-RPI  112 (719)
T ss_dssp             CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSS---CEEEEEEEEETTTTEECCSSCCC-SSB
T ss_pred             CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEe---ecceEEEEEECCCCccccceecC-ccc
Confidence            699999999999888765432    5679999999999998764322211   1246899999999987   5553 223


Q ss_pred             CcceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCc-------------------cccceeecC
Q 039497          194 GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVH-------------------CFTPAAFHD  253 (642)
Q Consensus       194 ~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~Spd  253 (642)
                      ..++|||||+ ++|+.   ++  +|+.+++.++        ...+++..+..                   ...++||||
T Consensus       113 ~~~~~SPDG~~la~~~---~~--~i~~~~~~~g--------~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD  179 (719)
T 1z68_A          113 QYLCWSPVGSKLAYVY---QN--NIYLKQRPGD--------PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN  179 (719)
T ss_dssp             CCEEECSSTTCEEEEE---TT--EEEEESSTTS--------CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT
T ss_pred             ccceECCCCCEEEEEE---CC--eEEEEeCCCC--------CcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC
Confidence            4689999995 55554   34  8999999887        55666543311                   146899999


Q ss_pred             CcEEEEEEeccCCceeeEEEEEeecCCCC---cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce--eEEe
Q 039497          254 GKRLAVATRRKNRNFRHIEIYDLTLNPNF---HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE--LRML  328 (642)
Q Consensus       254 G~~l~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  328 (642)
                      |++|++...+...    +.+|.+......   ......+...|.            .+....+++..+......  +.+.
T Consensus       180 G~~la~~~~d~~~----~~~~~~~~~~~~~~~~~~~~~yp~~g~------------~~~~~~l~~~d~~~~~~~~~~~~~  243 (719)
T 1z68_A          180 GKFLAYAEFNDTD----IPVIAYSYYGDEQYPRTINIPYPKAGA------------KNPVVRIFIIDTTYPAYVGPQEVP  243 (719)
T ss_dssp             SSEEEEEEEECTT----SCEEEEEECCSSSSCEEEEEECCBTTS------------CCCEEEEEEEESSCHHHHCCEECC
T ss_pred             CCEEEEEEECCCC----CceEEeeccCCCCCccceeecCCCCCC------------CCCeeEEEEEECCCCCccceeEcc
Confidence            9999998765321    112222110000   000000111110            011112223333222110  0000


Q ss_pred             --------eeCCCccEEcCCCCEEEEE--ecCCCceeEEEEE----CCCCCeeEEe----e--cCCce-----eeeeecC
Q 039497          329 --------RLNGSFPSFSPDGGLIVFN--HDFELNAGIKIAK----SDGSKRWTLI----K--DRTAF-----YNSWSPT  383 (642)
Q Consensus       329 --------~~~~~~~~~spdg~~l~~~--~~~~~~~~l~~~d----~~~~~~~~l~----~--~~~~~-----~~~~spd  383 (642)
                              ......+.|||||+ +++.  ........|+++|    +++++.+.+.    .  ...+.     .+.||||
T Consensus       244 ~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  322 (719)
T 1z68_A          244 VPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD  322 (719)
T ss_dssp             CCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred             CCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence                    00113578999975 5554  2234456899999    8777655554    2  23344     7899999


Q ss_pred             CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC----CCc
Q 039497          384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR----SGH  459 (642)
Q Consensus       384 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~----~g~  459 (642)
                      |+.|++...     ..++..+||.++.  +     ++     ..+.++.+. ..+..+.++ ||+.|+|.+..    .+.
T Consensus       323 g~~l~~~~~-----~~~g~~~l~~~~~--~-----~~-----~~~~lt~~~-~~v~~~~~~-d~~~i~~~~~~~~~~~~~  383 (719)
T 1z68_A          323 AISYYKIFS-----DKDGYKHIHYIKD--T-----VE-----NAIQITSGK-WEAINIFRV-TQDSLFYSSNEFEEYPGR  383 (719)
T ss_dssp             SSCEEEEEE-----CTTSCEEEEEESS--C-----ST-----TCEECSCSS-SCEEEEEEE-CSSEEEEEESCGGGCTTC
T ss_pred             CCeEEEEEE-----ccCCceEEEEEEC--C-----CC-----ceEecccCc-eEEEEEEEE-eCCEEEEEEecCCCCCce
Confidence            999888543     1245667777766  3     33     566777655 455566777 99999999976    566


Q ss_pred             eeEEEEECCCCccccceeeCCC----CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTD----GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      .+||.+++.+|..  ..+.|+.    +......+.|||||++|++......     ...++++|+++++...++.
T Consensus       384 ~~l~~~~~~~g~~--~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~-----~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          384 RNIYRISIGSYPP--SKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPG-----IPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             BEEEEEECSSSSC--CEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBS-----SCEEEEECSSSCCEEEEEE
T ss_pred             EEEEEEeCCCCCC--CceeccCccCCCCCceEEEEECCCCCEEEEEcCCCC-----CCeEEEEECCCCCEEEEee
Confidence            7899999866631  0355653    2234567899999999998766542     2358899998887655554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.89  E-value=3.2e-21  Score=199.92  Aligned_cols=225  Identities=13%  Similarity=0.206  Sum_probs=144.4

Q ss_pred             EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497          337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD  416 (642)
Q Consensus       337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  416 (642)
                      |+++|++|+|....   ....           +.    ...+.|+||++.+++....    .......|+.++.  .   
T Consensus       124 ~~~~g~~l~~~~~~---~~~~-----------~~----~~~~~~spdg~~~~~~~~~----~~~~~~~l~~~d~--~---  176 (396)
T 3c5m_A          124 WKGYGTWVANSDCT---KLVG-----------IE----ILKRDWQPLTSWEKFAEFY----HTNPTCRLIKVDI--E---  176 (396)
T ss_dssp             EEEEEEEEECTTSS---EEEE-----------EE----EEGGGCCCCCSHHHHHHHH----HTCCCEEEEEEET--T---
T ss_pred             cCCCCCEEEeccCC---cccc-----------cc----ccccccCCCCcceeeeeec----cCCCcceEEEEEC--C---
Confidence            78889888884321   1111           00    1246789999988775410    0123345565655  2   


Q ss_pred             CCCCCccccceEEccccCCCCccCcEECC-CCCeEEEEeCCCC---ceeEEEEECCCCccccceeeCCCCC--Cccccee
Q 039497          417 DNNREEIPCDVKILTKEETGNNAFPSCSP-DGKFLVFRSGRSG---HKNLFVLDAVNGEFNGDIRQLTDGP--WIDTMPS  490 (642)
Q Consensus       417 ~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g---~~~l~~~d~~~g~~~~~~~~l~~~~--~~~~~~~  490 (642)
                        ++     +...+.... .....+.||| ||++|+|.+....   ..+||++++++++.    +.+....  ..+..+.
T Consensus       177 --~g-----~~~~~~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          177 --TG-----ELEVIHQDT-AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV----RKIKEHAEGESCTHEF  244 (396)
T ss_dssp             --TC-----CEEEEEEES-SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----EESSCCCTTEEEEEEE
T ss_pred             --CC-----cEEeeccCC-cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----eEeeccCCCccccceE
Confidence              23     455555444 5677899999 8999999875221   15899999987764    6666532  2456689


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcC-CCCEEEEEEecCCcccCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA-DGEWLLFTANLGAVMAEP  569 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~-Dg~~l~~~~~~~~~~~~~  569 (642)
                      |||||++|+|.+.....   ....|+++|+.+++.+.+....  +        .. +.||| ||+.|++..... .    
T Consensus       245 ~spdg~~l~~~~~~~~~---~~~~l~~~d~~~g~~~~l~~~~--~--------~~-~~~s~~dg~~l~~~~~~~-p----  305 (396)
T 3c5m_A          245 WIPDGSAMAYVSYFKGQ---TDRVIYKANPETLENEEVMVMP--P--------CS-HLMSNFDGSLMVGDGCDA-P----  305 (396)
T ss_dssp             ECTTSSCEEEEEEETTT---CCEEEEEECTTTCCEEEEEECC--S--------EE-EEEECSSSSEEEEEECCC------
T ss_pred             ECCCCCEEEEEecCCCC---ccceEEEEECCCCCeEEeeeCC--C--------CC-CCccCCCCceEEEecCCc-c----
Confidence            99999999998765421   2245999999998887776422  2        12 89999 999887754320 0    


Q ss_pred             CCCC----CCCCCCCcEEEEEcCCCceeeccCCCC-----------CCCCcEEecCCceEEeecC
Q 039497          570 VSWP----NQFQPYGDLYVVKLDGSGLRRLTWNGY-----------ENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       570 ~~~~----~~~~~~~~l~~~~~~~~~~~~lt~~~~-----------~~~~~~~s~dg~~~~~~~~  619 (642)
                      +.+.    ........||++++.+++.++|+....           ....++|||||++++...+
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             ---------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence            0000    000012489999999988888886654           2567899999988765544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.1e-19  Score=205.24  Aligned_cols=441  Identities=13%  Similarity=0.052  Sum_probs=249.8

Q ss_pred             cCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccccc-CCCEEEEEEeccCCCccccc
Q 039497           40 TDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQIFKS  118 (642)
Q Consensus        40 t~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~  118 (642)
                      .+|...+...+|| |||++||. +..+|...||... .+.....+.....+.   ...+ +++.|+..+ .+        
T Consensus        14 ~gh~~~V~~lafs-pdg~~lAs-gs~Dg~I~lw~~~-~~~~~~~~~~~~~V~---~l~fspg~~L~S~s-~D--------   78 (902)
T 2oaj_A           14 YGMSSKPIAAAFD-FTQNLLAI-ATVTGEVHIYGQQ-QVEVVIKLEDRSAIK---EMRFVKGIYLVVIN-AK--------   78 (902)
T ss_dssp             EECSSCEEEEEEE-TTTTEEEE-EETTSEEEEECST-TCEEEEECSSCCCEE---EEEEETTTEEEEEE-TT--------
T ss_pred             cCCCCCcEEEEEC-CCCCEEEE-EeCCCEEEEEeCC-CcEEEEEcCCCCCEE---EEEEcCCCEEEEEE-Cc--------
Confidence            3667778899999 99999994 5567888888641 111111111101111   1122 355344433 32        


Q ss_pred             ccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee--------
Q 039497          119 WSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC--------  190 (642)
Q Consensus       119 ~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~--------  190 (642)
                       +.|.+.++.+++......+.......+|+|||++||....++            .|.+|++.+++......        
T Consensus        79 -~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg------------~V~lwd~~~~~~~~~~i~~~~~~~~  145 (902)
T 2oaj_A           79 -DTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNG------------SMIVYDIDRDQLSSFKLDNLQKSSF  145 (902)
T ss_dssp             -CEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTS------------CEEEEETTTTEEEEEEECCHHHHHT
T ss_pred             -CeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCC------------cEEEEECCCCccccceecccccccc
Confidence             145555888776543223444556789999999999887665            78999998876432111        


Q ss_pred             ---cC-C--CcceEeeCC-eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC------------------CCcc
Q 039497          191 ---ER-G--GWPTWSGDS-TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP------------------GVHC  245 (642)
Q Consensus       191 ---~~-~--~~~~wspdg-~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~  245 (642)
                         .+ +  ..++|+|++ .++++. ..+|.  | .+++.++.       ....+..+                  ...+
T Consensus       146 ~~~~h~~~V~sl~~sp~~~~~l~~g-~~dg~--v-lWd~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V  214 (902)
T 2oaj_A          146 FPAARLSPIVSIQWNPRDIGTVLIS-YEYVT--L-TYSLVENE-------IKQSFIYELPPFAPGGDFSEKTNEKRTPKV  214 (902)
T ss_dssp             CSSSCCCCCCEEEEETTEEEEEEEE-CSSCE--E-EEETTTTE-------EEEEECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred             ccccCCCCeEEEEEccCCCCEEEEE-eCCCc--E-EEECCCCc-------eEEEEecccCCcCCCcccccccccccCCCe
Confidence               11 1  245999975 566665 55674  5 56666653       22333322                  2346


Q ss_pred             ccceeecCCcEEEEEEeccCCceeeEEEEEeecCC--------------------------CCcccCCeec----CCCCE
Q 039497          246 FTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP--------------------------NFHHYNPFVS----ANSEF  295 (642)
Q Consensus       246 ~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~--------------------------~~~~~~~~~s----pDg~~  295 (642)
                      ..++|+|||++|+....++     .|.+||+..+.                          ...+...+|+    ||+..
T Consensus       215 ~~v~fspdg~~lasgs~Dg-----~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~  289 (902)
T 2oaj_A          215 IQSLYHPNSLHIITIHEDN-----SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTS  289 (902)
T ss_dssp             EEEEECTTSSEEEEEETTC-----CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEE
T ss_pred             EEEEEcCCCCEEEEEECCC-----eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCE
Confidence            7789999999999866554     89999983211                          1124456774    56556


Q ss_pred             EEEEEeecCCCCCCcccceEeeccC---------------CCceeEEeee--CC--CccEEcC----------CCCEEEE
Q 039497          296 IGYHRFRGESTEGQSTIPHLEPVAS---------------PVKELRMLRL--NG--SFPSFSP----------DGGLIVF  346 (642)
Q Consensus       296 l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~--~~--~~~~~sp----------dg~~l~~  346 (642)
                      +++...............+......               ..........  ..  ....+.+          |...++.
T Consensus       290 ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~  369 (902)
T 2oaj_A          290 LLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL  369 (902)
T ss_dssp             EEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE
T ss_pred             EEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE
Confidence            6555422211100111111110000               0000111111  11  1112222          3444554


Q ss_pred             EecCCCceeEEEEECCCCCeeEE------------------e-----------------------e--cCCceeeeeecC
Q 039497          347 NHDFELNAGIKIAKSDGSKRWTL------------------I-----------------------K--DRTAFYNSWSPT  383 (642)
Q Consensus       347 ~~~~~~~~~l~~~d~~~~~~~~l------------------~-----------------------~--~~~~~~~~~spd  383 (642)
                      ...   ...|+++++..+.....                  .                       .  ...+..++|+||
T Consensus       370 ~s~---dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd  446 (902)
T 2oaj_A          370 ILG---NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY  446 (902)
T ss_dssp             EET---TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred             EcC---CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence            442   35677778755431100                  0                       0  112345678999


Q ss_pred             CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE--cc-----ccCCCCccCcEECCCCCeEEEEeCC
Q 039497          384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI--LT-----KEETGNNAFPSCSPDGKFLVFRSGR  456 (642)
Q Consensus       384 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--l~-----~~~~~~~~~~~~SpDg~~l~~~~~~  456 (642)
                      |+.|+..+.       ++.+++|++..        +... ......  +.     .+. ..+..++|||||++|+..+.+
T Consensus       447 g~~laSgs~-------DgtVrlWd~~~--------g~~~-~~~~~~~~l~~~~~~~h~-~~V~svafspdg~~LAsgs~D  509 (902)
T 2oaj_A          447 GTAFITGHS-------NGSVRIYDASH--------GDIQ-DNASFEVNLSRTLNKAKE-LAVDKISFAAETLELAVSIET  509 (902)
T ss_dssp             EEEEEEEET-------TSEEEEEESSC--------CTTT-TTBCEEEEHHHHTTCSSS-CCEEEEEEETTTTEEEEEETT
T ss_pred             CcEEEEecC-------CCcEEEEECCC--------cccc-CCceEEeechhhcCCCCC-CceeEEEecCCCCeEEEEecC
Confidence            998888774       78999999865        1100 000011  11     233 568889999999999988743


Q ss_pred             CCceeEEEEECCCCccc------------------------------------------cceeeCCCCCCcccceeEecC
Q 039497          457 SGHKNLFVLDAVNGEFN------------------------------------------GDIRQLTDGPWIDTMPSWSPK  494 (642)
Q Consensus       457 ~g~~~l~~~d~~~g~~~------------------------------------------~~~~~l~~~~~~~~~~~~spd  494 (642)
                       +  .|.+|++++++..                                          ..+..+..+...+..++||||
T Consensus       510 -g--tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd  586 (902)
T 2oaj_A          510 -G--DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI  586 (902)
T ss_dssp             -S--CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT
T ss_pred             -c--EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC
Confidence             3  6777776655200                                          002345556677888999999


Q ss_pred             CCEEEEEecCCCCCCCCceeEEEEeCCCCceEE---eee--cCCCCCCCcccccccceEEc-----CCC---CEEEEEEe
Q 039497          495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR---IHV--AGPEGSGDVDRERINHVCFS-----ADG---EWLLFTAN  561 (642)
Q Consensus       495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l~~--~~~~~~~~~~~~~~~~~~~S-----~Dg---~~l~~~~~  561 (642)
                      | +|+..+.++.        |.+||+++.....   +..  .++..       .+..++||     |||   ++|+..+.
T Consensus       587 G-~lAsgs~D~t--------v~lwd~~~~~~~~~~~~~~~~~gh~~-------~V~sv~Fs~~~~~~Dg~~~~~l~sgs~  650 (902)
T 2oaj_A          587 G-FVGIAYAAGS--------LMLIDRRGPAIIYMENIREISGAQSA-------CVTCIEFVIMEYGDDGYSSILMVCGTD  650 (902)
T ss_dssp             S-EEEEEETTSE--------EEEEETTTTEEEEEEEGGGTCSSCCC-------CEEEEEEEEEECTTSSSEEEEEEEEET
T ss_pred             c-EEEEEeCCCc--------EEEEECCCCeEEEEeehhHhcccccc-------ceEEEEEEEEecCCCCCcceEEEEEec
Confidence            9 8998887764        8999998765532   111  13333       68899999     986   77777776


Q ss_pred             cC
Q 039497          562 LG  563 (642)
Q Consensus       562 ~~  563 (642)
                      ++
T Consensus       651 D~  652 (902)
T 2oaj_A          651 MG  652 (902)
T ss_dssp             TS
T ss_pred             CC
Confidence            64

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.86  E-value=7.4e-19  Score=177.51  Aligned_cols=310  Identities=13%  Similarity=0.033  Sum_probs=202.2

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCC-CceeEeecCC--CcceEeeCCeEEEEEecCCCceEEE
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDP-NKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIF  218 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~  218 (642)
                      ...++|||||++||+......+.            .+..... ..........  ..++|+|+++++++. . +|...||
T Consensus        12 v~~~~~s~dg~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-dg~i~iw   77 (337)
T 1gxr_A           12 AYSFHVTADGQMQPVPFPPDALI------------GPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG-G-KGCVKVW   77 (337)
T ss_dssp             CCEEEECSSSCEEECCCCTTSSS------------STTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEE-C-BSEEEEE
T ss_pred             eeEEEECCCCCEEEeecCCCcEe------------ccccCCccccceeccCCCceEEEEEecCCcEEEEc-C-CCeEEEE
Confidence            34589999999999776444211            1111000 0111111111  246999999988887 3 6755555


Q ss_pred             EEecCCCcccccCCccceeeC--CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEE
Q 039497          219 RVSFPENLEFLGFPIAPTRVT--PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFI  296 (642)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l  296 (642)
                      .++......      ....+.  .+...+..++|+|||++|++...++     .+.+||+....              ..
T Consensus        78 ~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~--------------~~  132 (337)
T 1gxr_A           78 DISHPGNKS------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-----TLSIWDLAAPT--------------PR  132 (337)
T ss_dssp             ETTSTTCCS------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSS-----EEEEEECCCC----------------E
T ss_pred             ECCCCCcee------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCC-----cEEEEECCCCC--------------cc
Confidence            543322110      112222  4555677889999999998865443     78888873211              00


Q ss_pred             EEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCC
Q 039497          297 GYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRT  374 (642)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~  374 (642)
                      ..                 ..+......       ...+.|+|+++.|+....   ...|.++++.+++......  ...
T Consensus       133 ~~-----------------~~~~~~~~~-------i~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~~~~~~~~~~~~~  185 (337)
T 1gxr_A          133 IK-----------------AELTSSAPA-------CYALAISPDSKVCFSCCS---DGNIAVWDLHNQTLVRQFQGHTDG  185 (337)
T ss_dssp             EE-----------------EEEECSSSC-------EEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSC
T ss_pred             ee-----------------eecccCCCc-------eEEEEECCCCCEEEEEeC---CCcEEEEeCCCCceeeeeecccCc
Confidence            00                 000000001       124589999998887654   3678899998876554443  566


Q ss_pred             ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497          375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS  454 (642)
Q Consensus       375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~  454 (642)
                      +..+.|+|+++.|+....       ++.+.+|++..        +.     ....+ ... ..+..+.|+|||+.|+..+
T Consensus       186 i~~~~~~~~~~~l~~~~~-------dg~i~~~d~~~--------~~-----~~~~~-~~~-~~v~~~~~s~~~~~l~~~~  243 (337)
T 1gxr_A          186 ASCIDISNDGTKLWTGGL-------DNTVRSWDLRE--------GR-----QLQQH-DFT-SQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             EEEEEECTTSSEEEEEET-------TSEEEEEETTT--------TE-----EEEEE-ECS-SCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEECCCCCEEEEEec-------CCcEEEEECCC--------Cc-----eEeee-cCC-CceEEEEECCCCCEEEEEc
Confidence            889999999999988774       67889998754        11     22233 233 5677899999999999887


Q ss_pred             CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497          455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE  534 (642)
Q Consensus       455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~  534 (642)
                      ..   ..|++|++.+++.    ..+..+...+..+.|+|||++|+..+.++.        |++|++.+++......  ..
T Consensus       244 ~~---~~i~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------i~~~~~~~~~~~~~~~--~~  306 (337)
T 1gxr_A          244 ES---SNVEVLHVNKPDK----YQLHLHESCVLSLKFAYCGKWFVSTGKDNL--------LNAWRTPYGASIFQSK--ES  306 (337)
T ss_dssp             TT---SCEEEEETTSSCE----EEECCCSSCEEEEEECTTSSEEEEEETTSE--------EEEEETTTCCEEEEEE--CS
T ss_pred             CC---CcEEEEECCCCCe----EEEcCCccceeEEEECCCCCEEEEecCCCc--------EEEEECCCCeEEEEec--CC
Confidence            43   3799999998774    666667777888999999999988877653        9999998877654332  23


Q ss_pred             CCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          535 GSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       535 ~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      .       .+..+.|+|||+.|+..+.++
T Consensus       307 ~-------~v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          307 S-------SVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             S-------CEEEEEECTTSCEEEEEETTS
T ss_pred             C-------cEEEEEECCCCCEEEEecCCC
Confidence            3       567899999999998877654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=1.9e-19  Score=178.07  Aligned_cols=266  Identities=21%  Similarity=0.292  Sum_probs=192.6

Q ss_pred             eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec-CCCCcccCCeecCCC
Q 039497          215 WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL-NPNFHHYNPFVSANS  293 (642)
Q Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~spDg  293 (642)
                      ..|+.+++.++        +...+..+...+..++|||||++|++.. .     ..+++||+.. ...            
T Consensus        22 ~~i~~~d~~~~--------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~~~------------   75 (297)
T 2ojh_A           22 SSIEIFNIRTR--------KMRVVWQTPELFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDPSP------------   75 (297)
T ss_dssp             EEEEEEETTTT--------EEEEEEEESSCCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCCSC------------
T ss_pred             eeEEEEeCCCC--------ceeeeccCCcceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCCCc------------
Confidence            48888898887        5556655555677899999999999853 2     2788888732 110            


Q ss_pred             CEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec-CCCceeEEEEECCCCCeeEEeec
Q 039497          294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD-FELNAGIKIAKSDGSKRWTLIKD  372 (642)
Q Consensus       294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~l~~~d~~~~~~~~l~~~  372 (642)
                                        .   ......      .......+.|+|||++|++... ..+...||.++++++..+.+...
T Consensus        76 ------------------~---~~~~~~------~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  128 (297)
T 2ojh_A           76 ------------------E---KVDTGF------ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN  128 (297)
T ss_dssp             ------------------E---ECCCTT------CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS
T ss_pred             ------------------e---Eecccc------ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC
Confidence                              0   000000      0011235799999999999774 23578999999988887776665


Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      ..+..+.|+|||+.|+++..      .+..+.||.++.  +     ++     ....+.... ..+..+.|+|||++|++
T Consensus       129 ~~~~~~~~spdg~~l~~~~~------~~~~~~l~~~~~--~-----~~-----~~~~~~~~~-~~~~~~~~s~dg~~l~~  189 (297)
T 2ojh_A          129 LPSYWHGWSPDGKSFTYCGI------RDQVFDIYSMDI--D-----SG-----VETRLTHGE-GRNDGPDYSPDGRWIYF  189 (297)
T ss_dssp             SSEEEEEECTTSSEEEEEEE------ETTEEEEEEEET--T-----TC-----CEEECCCSS-SCEEEEEECTTSSEEEE
T ss_pred             CCccceEECCCCCEEEEEEC------CCCceEEEEEEC--C-----CC-----cceEcccCC-CccccceECCCCCEEEE
Confidence            55778899999999998763      257789999987  3     33     556666655 66778999999999999


Q ss_pred             EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC---CCCceeEEEEeCCCCceEEee
Q 039497          453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD---NVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~---~~~~~~l~~~d~~~~~~~~l~  529 (642)
                      .+..++...||.++..+++    +..+......+..+.|+|||++|++.+.+....   ......|++||+++++.+.+.
T Consensus       190 ~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSS----VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             EECTTSSCEEEEEETTSSC----EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             EecCCCCccEEEECCCCCC----cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            9877777899999987666    477877666677889999999999988753210   012367999999998877665


Q ss_pred             ec-CCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          530 VA-GPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       530 ~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      .. ....       .+..+.|+|||++|++.+.+.
T Consensus       266 ~~~~~~~-------~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          266 DLFGGQG-------TMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEESTT-------TSCSCCBCTTSSEEEEEEECC
T ss_pred             ccCCCCc-------ccccceECCCCCEEEEEEecc
Confidence            42 2222       457799999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.5e-19  Score=188.97  Aligned_cols=334  Identities=10%  Similarity=0.010  Sum_probs=215.9

Q ss_pred             CccCCceeCCCCc-EEEEEecCCCCCCCCCCCCeeeEEEEEe----cCCCc------ee-Eeec---------CC---Cc
Q 039497          140 VVDYSPSVSYSGK-FIAVASYESRPWPGEFHELNTDIVVFQE----SDPNK------RV-IVCE---------RG---GW  195 (642)
Q Consensus       140 ~~~~~~~~SPDG~-~la~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~------~~-l~~~---------~~---~~  195 (642)
                      ......+|||||+ +||+...+.            .|.+|++    .+++.      .. +...         +.   ..
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNS------------VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC  113 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBT------------EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE
T ss_pred             CceEEEEECCCCCcEEEEecCCc------------eEEEEEEecccCCccccccccccccccccccccccccCCCCceEE
Confidence            4456789999999 999887655            7889999    87772      22 2221         11   24


Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      ++|+||+.++++. ..+|...||  +..+.        ....+..+...+..++|+|+|++|+....++     .+.+||
T Consensus       114 ~~~s~~~~~l~~~-~~dg~i~i~--~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd  177 (425)
T 1r5m_A          114 LAWSHDGNSIVTG-VENGELRLW--NKTGA--------LLNVLNFHRAPIVSVKWNKDGTHIISMDVEN-----VTILWN  177 (425)
T ss_dssp             EEECTTSSEEEEE-ETTSCEEEE--ETTSC--------EEEEECCCCSCEEEEEECTTSSEEEEEETTC-----CEEEEE
T ss_pred             EEEcCCCCEEEEE-eCCCeEEEE--eCCCC--------eeeeccCCCccEEEEEECCCCCEEEEEecCC-----eEEEEE
Confidence            5999999888877 457755665  44443        5566776776788899999999998865544     788998


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG  355 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  355 (642)
                      +...              +.+..........    ......       .............|+|++. ++..   .....
T Consensus       178 ~~~~--------------~~~~~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~---~~~g~  228 (425)
T 1r5m_A          178 VISG--------------TVMQHFELKETGG----SSINAE-------NHSGDGSLGVDVEWVDDDK-FVIP---GPKGA  228 (425)
T ss_dssp             TTTT--------------EEEEEECCC--------------------------CCCBSCCEEEETTE-EEEE---CGGGC
T ss_pred             CCCC--------------cEEEEeeccccCc----cceeec-------cccCCcceeeEEEEcCCCE-EEEE---cCCCe
Confidence            7321              1111110000000    000000       0000000123568888875 4443   23478


Q ss_pred             EEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc
Q 039497          356 IKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE  433 (642)
Q Consensus       356 l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  433 (642)
                      |+++++..++......  ...+..+.|+|+++.|+....       ++.+.+|++..        +.     ....+..+
T Consensus       229 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~--------~~-----~~~~~~~~  288 (425)
T 1r5m_A          229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-------DGTLRIWHGGN--------GN-----SQNCFYGH  288 (425)
T ss_dssp             EEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-------TSCEEEECSSS--------BS-----CSEEECCC
T ss_pred             EEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-------CCEEEEEECCC--------Cc-----cceEecCC
Confidence            9999998876654443  566889999999998888764       67899998755        22     44555544


Q ss_pred             CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497          434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF  513 (642)
Q Consensus       434 ~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~  513 (642)
                      . ..+..+.|+||| .|+..+.   ...|.+||+.+++.   +..+..+...+..+.|+|+|++|+..+.++.       
T Consensus       289 ~-~~i~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-------  353 (425)
T 1r5m_A          289 S-QSIVSASWVGDD-KVISCSM---DGSVRLWSLKQNTL---LALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-------  353 (425)
T ss_dssp             S-SCEEEEEEETTT-EEEEEET---TSEEEEEETTTTEE---EEEEECTTCCEEEEEECTTSSEEEEEETTSC-------
T ss_pred             C-ccEEEEEECCCC-EEEEEeC---CCcEEEEECCCCcE---eEecccCCccEEEEEEcCCCCEEEEEECCCe-------
Confidence            4 677889999999 6666553   34899999998886   5556655667788999999999998887654       


Q ss_pred             eEEEEeCCCCc--------------------eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497          514 SLYVIKPDGSG--------------------LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP  573 (642)
Q Consensus       514 ~l~~~d~~~~~--------------------~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~  573 (642)
                       |++||+.+++                    ...... .+..     ...+..+.|+|||++|+..+.++          
T Consensus       354 -i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~v~~~~~s~~~~~l~~~~~dg----------  416 (425)
T 1r5m_A          354 -VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQD-----NDYIFDLSWNCAGNKISVAYSLQ----------  416 (425)
T ss_dssp             -EEEEECHHHHC--------------CEECCEEEEEC-CTTC-----CCCEEEEEECTTSSEEEEEESSS----------
T ss_pred             -EEEEECCCCccceeeeecccccccCcccchhhhhhc-Cccc-----CCceEEEEccCCCceEEEEecCc----------
Confidence             9999997665                    222221 1110     00467899999999998877654          


Q ss_pred             CCCCCCCcEEEEEcCC
Q 039497          574 NQFQPYGDLYVVKLDG  589 (642)
Q Consensus       574 ~~~~~~~~l~~~~~~~  589 (642)
                             .|.+|++.|
T Consensus       417 -------~i~iw~~~g  425 (425)
T 1r5m_A          417 -------EGSVVAIPG  425 (425)
T ss_dssp             -------CCEEEECCC
T ss_pred             -------eEEEEeecC
Confidence                   677777754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.86  E-value=3e-19  Score=180.37  Aligned_cols=311  Identities=11%  Similarity=0.048  Sum_probs=210.4

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY  274 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~  274 (642)
                      .++|+|||+++++....+. .  ..+......       .......+...+..++|+|+|++|+... +     ..+.+|
T Consensus        14 ~~~~s~dg~~~~~~~~~~~-~--~~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~~~~-d-----g~i~iw   77 (337)
T 1gxr_A           14 SFHVTADGQMQPVPFPPDA-L--IGPGIPRHA-------RQINTLNHGEVVCAVTISNPTRHVYTGG-K-----GCVKVW   77 (337)
T ss_dssp             EEEECSSSCEEECCCCTTS-S--SSTTCCSEE-------EEEEEECCSSCCCEEEECSSSSEEEEEC-B-----SEEEEE
T ss_pred             EEEECCCCCEEEeecCCCc-E--eccccCCcc-------ccceeccCCCceEEEEEecCCcEEEEcC-C-----CeEEEE
Confidence            3699999988876632222 1  111111111       2233345566788899999999988854 3     389999


Q ss_pred             EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce
Q 039497          275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA  354 (642)
Q Consensus       275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  354 (642)
                      |+.......                            .............       ...+.|+|+++.|+....   ..
T Consensus        78 ~~~~~~~~~----------------------------~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~---d~  119 (337)
T 1gxr_A           78 DISHPGNKS----------------------------PVSQLDCLNRDNY-------IRSCKLLPDGCTLIVGGE---AS  119 (337)
T ss_dssp             ETTSTTCCS----------------------------CSEEEECSCTTSB-------EEEEEECTTSSEEEEEES---SS
T ss_pred             ECCCCCcee----------------------------eeecccccCCCCc-------EEEEEEcCCCCEEEEEcC---CC
Confidence            883321000                            0000000000011       124589999998888654   36


Q ss_pred             eEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          355 GIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       355 ~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      .|.++++.+++......    ...+..+.|+|+++.|+....       ++.+.+|++..        +.     ....+
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------dg~v~~~d~~~--------~~-----~~~~~  179 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS-------DGNIAVWDLHN--------QT-----LVRQF  179 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTT--------TE-----EEEEE
T ss_pred             cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC-------CCcEEEEeCCC--------Cc-----eeeee
Confidence            78889998876333222    456788999999999988774       67889998754        11     34455


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      ..+. ..+..+.|+|||++|+..+.   ...|++||+.+++.   +..+ .....+..+.|+|+|+.|++.+.++.    
T Consensus       180 ~~~~-~~i~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~---~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----  247 (337)
T 1gxr_A          180 QGHT-DGASCIDISNDGTKLWTGGL---DNTVRSWDLREGRQ---LQQH-DFTSQIFSLGYCPTGEWLAVGMESSN----  247 (337)
T ss_dssp             CCCS-SCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEE---EEEE-ECSSCEEEEEECTTSSEEEEEETTSC----
T ss_pred             eccc-CceEEEEECCCCCEEEEEec---CCcEEEEECCCCce---Eeee-cCCCceEEEEECCCCCEEEEEcCCCc----
Confidence            5444 67788999999999988774   34899999998875   3333 34456778899999999998887654    


Q ss_pred             CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                          |++||+.+++...+.  .+..       .+..+.|+|||+.|+..+.++                 .|.+|++..+
T Consensus       248 ----i~~~~~~~~~~~~~~--~~~~-------~v~~~~~~~~~~~l~~~~~dg-----------------~i~~~~~~~~  297 (337)
T 1gxr_A          248 ----VEVLHVNKPDKYQLH--LHES-------CVLSLKFAYCGKWFVSTGKDN-----------------LLNAWRTPYG  297 (337)
T ss_dssp             ----EEEEETTSSCEEEEC--CCSS-------CEEEEEECTTSSEEEEEETTS-----------------EEEEEETTTC
T ss_pred             ----EEEEECCCCCeEEEc--CCcc-------ceeEEEECCCCCEEEEecCCC-----------------cEEEEECCCC
Confidence                999999887765543  3333       578899999999988777553                 7899999887


Q ss_pred             ceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          591 GLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       591 ~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      +......+...+..+.|+||++++++....+
T Consensus       298 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          298 ASIFQSKESSSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             CEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             eEEEEecCCCcEEEEEECCCCCEEEEecCCC
Confidence            7665555566678899999999988765544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.4e-18  Score=198.29  Aligned_cols=432  Identities=10%  Similarity=0.010  Sum_probs=240.7

Q ss_pred             eeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccc
Q 039497           17 YGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRP   96 (642)
Q Consensus        17 ~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~   96 (642)
                      ..|.|.+.+..+     .+......|...+...+|+ | |++|+ +...++...||.+..+ +....+.....+. .-..
T Consensus        37 ~Dg~I~lw~~~~-----~~~~~~~~~~~~V~~l~fs-p-g~~L~-S~s~D~~v~lWd~~~~-~~~~~~~~~~~V~-~v~~  106 (902)
T 2oaj_A           37 VTGEVHIYGQQQ-----VEVVIKLEDRSAIKEMRFV-K-GIYLV-VINAKDTVYVLSLYSQ-KVLTTVFVPGKIT-SIDT  106 (902)
T ss_dssp             TTSEEEEECSTT-----CEEEEECSSCCCEEEEEEE-T-TTEEE-EEETTCEEEEEETTTC-SEEEEEECSSCEE-EEEC
T ss_pred             CCCEEEEEeCCC-----cEEEEEcCCCCCEEEEEEc-C-CCEEE-EEECcCeEEEEECCCC-cEEEEEcCCCCEE-EEEE
Confidence            356788887766     6655555677888999999 9 88777 4556888999987332 2111111101110 0011


Q ss_pred             ccCCCEEEEEEeccCCCcccccccceEEEEccCCceEe------------cccCCCccCCceeCCCC-cEEEEEecCCCC
Q 039497           97 VARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTR------------LTPYGVVDYSPSVSYSG-KFIAVASYESRP  163 (642)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------lt~~~~~~~~~~~SPDG-~~la~~~~~~~~  163 (642)
                      ..+++.++. ...+         +.|.++++.+++...            +..+.......+|+|++ ..|+....+.  
T Consensus       107 sp~g~~l~s-gs~d---------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg--  174 (902)
T 2oaj_A          107 DASLDWMLI-GLQN---------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV--  174 (902)
T ss_dssp             CTTCSEEEE-EETT---------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC--
T ss_pred             CCCCCEEEE-EcCC---------CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC--
Confidence            224555544 4332         246666888876532            12233445678999975 5666665444  


Q ss_pred             CCCCCCCCeeeEEEEEecCCCceeEeecC-------------------C--CcceEeeCCeEEEEEecCCCceEEEEEec
Q 039497          164 WPGEFHELNTDIVVFQESDPNKRVIVCER-------------------G--GWPTWSGDSTIYFHRQADDGWWSIFRVSF  222 (642)
Q Consensus       164 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-------------------~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~  222 (642)
                                .| +|++.+++..+....+                   .  ..++|+|||.++++. ..+|...||  +.
T Consensus       175 ----------~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg-s~Dg~i~lW--d~  240 (902)
T 2oaj_A          175 ----------TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI-HEDNSLVFW--DA  240 (902)
T ss_dssp             ----------EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE-ETTCCEEEE--ET
T ss_pred             ----------cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE-ECCCeEEEE--EC
Confidence                      67 9999888755443321                   1  135999999988887 567855555  55


Q ss_pred             CCCcccccCCccce--eeC----C------------CCCccccceee----cCCcEEEEEE-eccCCceeeEEEEEeec-
Q 039497          223 PENLEFLGFPIAPT--RVT----P------------PGVHCFTPAAF----HDGKRLAVAT-RRKNRNFRHIEIYDLTL-  278 (642)
Q Consensus       223 ~~~~~~~~~~~~~~--~l~----~------------~~~~~~~~~~S----pdG~~l~~~~-~~~~~~~~~i~~~d~~~-  278 (642)
                      .++.       ...  .+.    .            +...+..++|+    ||+..++++. .........+.+|++.. 
T Consensus       241 ~~g~-------~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~  313 (902)
T 2oaj_A          241 NSGH-------MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYT  313 (902)
T ss_dssp             TTCC-------EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEEC
T ss_pred             CCCc-------EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCC
Confidence            5552       111  111    0            11235567784    5655565554 22222233677776411 


Q ss_pred             --------------------------CCCCcccCCeecC----------CCCEEEEEEeecCCCCCCcccceEee-----
Q 039497          279 --------------------------NPNFHHYNPFVSA----------NSEFIGYHRFRGESTEGQSTIPHLEP-----  317 (642)
Q Consensus       279 --------------------------~~~~~~~~~~~sp----------Dg~~l~~~~~~~~~~~~~~~~~~~~~-----  317 (642)
                                                .....+....+.+          |+..++....++.      ...|-..     
T Consensus       314 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~------l~~~~~~~g~~~  387 (902)
T 2oaj_A          314 PRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE------IETMLYPSGIFT  387 (902)
T ss_dssp             CCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC------EEEEETTTCCEE
T ss_pred             CCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc------EEEEECCCCCcc
Confidence                                      0111111122222          2223333322221      1111100     


Q ss_pred             ---------ccCCCceeE---Ee-------------------eeC-----CCccEEcCCCCEEEEEecCCCceeEEEEEC
Q 039497          318 ---------VASPVKELR---ML-------------------RLN-----GSFPSFSPDGGLIVFNHDFELNAGIKIAKS  361 (642)
Q Consensus       318 ---------~~~~~~~~~---~~-------------------~~~-----~~~~~~spdg~~l~~~~~~~~~~~l~~~d~  361 (642)
                               +......+.   ..                   ...     ....+|+|||+.|+..+.   ...|.++|+
T Consensus       388 ~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~---DgtVrlWd~  464 (902)
T 2oaj_A          388 DKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHS---NGSVRIYDA  464 (902)
T ss_dssp             CCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEET---TSEEEEEES
T ss_pred             cccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecC---CCcEEEEEC
Confidence                     000000000   00                   001     123467999998887664   367888898


Q ss_pred             CCCCeeE---E----------eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCC------CCCc
Q 039497          362 DGSKRWT---L----------IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDN------NREE  422 (642)
Q Consensus       362 ~~~~~~~---l----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~  422 (642)
                      .++....   +          .....+..++|||||+.|+..+.       ++.++||++..  ...+..      ....
T Consensus       465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~-------DgtV~lwd~~~--~~~~~~~~~~~~~~~~  535 (902)
T 2oaj_A          465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE-------TGDVVLFKYEV--NQFYSVENRPESGDLE  535 (902)
T ss_dssp             SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET-------TSCEEEEEEEE--CCC-------------
T ss_pred             CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec-------CcEEEEEEecC--ccccCccccCCCcccc
Confidence            8765321   1          11346889999999999998874       78999999976  100000      0000


Q ss_pred             -------cc---------------------cceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccc
Q 039497          423 -------IP---------------------CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG  474 (642)
Q Consensus       423 -------~~---------------------~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~  474 (642)
                             +.                     .....+..+. ..+..++||||| +|+..+.   +..|.+||++++..  
T Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~-~~V~svafSpdG-~lAsgs~---D~tv~lwd~~~~~~--  608 (902)
T 2oaj_A          536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK-GKTSAINNSNIG-FVGIAYA---AGSLMLIDRRGPAI--  608 (902)
T ss_dssp             --CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS-CSEEEEEECBTS-EEEEEET---TSEEEEEETTTTEE--
T ss_pred             eeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC-CcEEEEEecCCc-EEEEEeC---CCcEEEEECCCCeE--
Confidence                   00                     0123344444 678889999999 8887774   34799999987653  


Q ss_pred             cee-----eCC-CCCCcccceeEe-----cCC---CEEEEEecCCCCCCCCceeEEEEeC---CCCce
Q 039497          475 DIR-----QLT-DGPWIDTMPSWS-----PKG---DLIAFSSNRHNPDNVEAFSLYVIKP---DGSGL  525 (642)
Q Consensus       475 ~~~-----~l~-~~~~~~~~~~~s-----pdG---~~l~~~~~~~~~~~~~~~~l~~~d~---~~~~~  525 (642)
                       +.     .+. .+...+..++||     |||   ++|+..+.++.        |.+||+   .+++.
T Consensus       609 -~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t--------v~~wd~~p~~~g~~  667 (902)
T 2oaj_A          609 -IYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE--------VITYKILPASGGKF  667 (902)
T ss_dssp             -EEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE--------EEEEEEEECGGGCE
T ss_pred             -EEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc--------EEEEEEecCCCCcE
Confidence             21     232 455668889999     886   77887777654        888888   55543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=4.1e-19  Score=175.58  Aligned_cols=240  Identities=20%  Similarity=0.240  Sum_probs=177.7

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCC-CCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      ..+.|+|||++|++..    ...|+++++++ ++...+..   ...+..+.|+|||+.|++....     .+....||.+
T Consensus        45 ~~~~~spdg~~l~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----~~~~~~l~~~  115 (297)
T 2ojh_A           45 EAPNWSPDGKYLLLNS----EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKV-----EFGKSAIYLL  115 (297)
T ss_dssp             EEEEECTTSSEEEEEE----TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECT-----TTSSCEEEEE
T ss_pred             EeeEECCCCCEEEEEc----CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeC-----CCCcceEEEE
Confidence            4679999999999965    35899999998 87776654   2456789999999999998842     2356788888


Q ss_pred             EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccc
Q 039497          409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM  488 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~  488 (642)
                      +.  +     ++     ..+.+....  ....+.|+|||++|++....++...||.++..+++    ...+......+..
T Consensus       116 ~~--~-----~~-----~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~  177 (297)
T 2ojh_A          116 PS--T-----GG-----TPRLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV----ETRLTHGEGRNDG  177 (297)
T ss_dssp             ET--T-----CC-----CCEECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC----EEECCCSSSCEEE
T ss_pred             EC--C-----CC-----ceEEeecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCc----ceEcccCCCcccc
Confidence            76  3     23     455665554  36668999999999988877677789999998777    4777777677788


Q ss_pred             eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497          489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE  568 (642)
Q Consensus       489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~  568 (642)
                      +.|+|||++|++.....     +...||.+++.++....+...  ..       .+..+.|+|||++|++.+.++.... 
T Consensus       178 ~~~s~dg~~l~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~--~~-------~~~~~~~s~dg~~l~~~~~~~~~~~-  242 (297)
T 2ojh_A          178 PDYSPDGRWIYFNSSRT-----GQMQIWRVRVDGSSVERITDS--AY-------GDWFPHPSPSGDKVVFVSYDADVFD-  242 (297)
T ss_dssp             EEECTTSSEEEEEECTT-----SSCEEEEEETTSSCEEECCCC--SE-------EEEEEEECTTSSEEEEEEEETTCCS-
T ss_pred             ceECCCCCEEEEEecCC-----CCccEEEECCCCCCcEEEecC--Cc-------ccCCeEECCCCCEEEEEEcCCCCCc-
Confidence            99999999999987643     456788888888777666532  22       4567899999999999987643100 


Q ss_pred             CCCCCCCCCCCCcEEEEEcCCCceeecc---CCCCCCCCcEEecCCceEEeecC
Q 039497          569 PVSWPNQFQPYGDLYVVKLDGSGLRRLT---WNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       569 ~~~~~~~~~~~~~l~~~~~~~~~~~~lt---~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                           ..+.....|++|++.+++...+.   .+...+..++|+|||++++...+
T Consensus       243 -----~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          243 -----HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             -----CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             -----ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence                 00000137999999988766555   34556788999999998865543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=1.9e-19  Score=196.94  Aligned_cols=280  Identities=15%  Similarity=0.088  Sum_probs=184.5

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEec--CCCceE
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQA--DDGWWS  216 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~--~~g~~~  216 (642)
                      ....+|||||++|||.+...         +...||  .+++++.++++....   ..++|||| +++|+...  .+..+.
T Consensus        24 ~~~~~~~~DG~~la~~s~~~---------g~~~lw--~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~   91 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSE---------GSVNAY--LYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHA   91 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEET---------TEEEEE--EEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred             hheeecCCCCCeEEEEEccC---------CceeEE--EEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceE
Confidence            34578999999999987633         344554  468888888887553   35799999 88888743  234579


Q ss_pred             EEEEec--CCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCC
Q 039497          217 IFRVSF--PENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSE  294 (642)
Q Consensus       217 l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~  294 (642)
                      ||.++.  .++        . .+++.... ....+|||||+.++++....+    .+.+||+..+.              
T Consensus        92 l~~~~~~~~g~--------~-~~l~~~~~-~~~~~~s~dg~~~~~~s~~~~----~~~l~d~~~g~--------------  143 (582)
T 3o4h_A           92 LFKVNTSRPGE--------E-QRLEAVKP-MRILSGVDTGEAVVFTGATED----RVALYALDGGG--------------  143 (582)
T ss_dssp             EEEEETTSTTC--------C-EECTTSCS-BEEEEEEECSSCEEEEEECSS----CEEEEEEETTE--------------
T ss_pred             EEEEeccCCCc--------c-ccccCCCC-ceeeeeCCCCCeEEEEecCCC----CceEEEccCCc--------------
Confidence            999998  554        2 35554432 335689999998888654432    33366652110              


Q ss_pred             EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC-CCceeEEEEECCCCCeeEEee-c
Q 039497          295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF-ELNAGIKIAKSDGSKRWTLIK-D  372 (642)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~~l~~~d~~~~~~~~l~~-~  372 (642)
                                                 ..  .+.......+.|||||++|++.... .+...||++|+++++.++++. .
T Consensus       144 ---------------------------~~--~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~  194 (582)
T 3o4h_A          144 ---------------------------LR--ELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGE  194 (582)
T ss_dssp             ---------------------------EE--EEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSS
T ss_pred             ---------------------------EE--EeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCC
Confidence                                       00  0111122467899999999987653 333679999999999888765 4


Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE--------EC
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS--------CS  444 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~S  444 (642)
                      ..+..+.|||||+.|+....       ++...|+.++.  +     ++     ..+.+.... ..+..+.        ||
T Consensus       195 ~~~~~~~~SpDG~~l~~~~~-------~~~~~i~~~d~--~-----~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~s  254 (582)
T 3o4h_A          195 GSFSSASISPGMKVTAGLET-------AREARLVTVDP--R-----DG-----SVEDLELPS-KDFSSYRPTAITWLGYL  254 (582)
T ss_dssp             CEEEEEEECTTSCEEEEEEC-------SSCEEEEEECT--T-----TC-----CEEECCCSC-SHHHHHCCSEEEEEEEC
T ss_pred             CccccceECCCCCEEEEccC-------CCeeEEEEEcC--C-----CC-----cEEEccCCC-cChhhhhhccccceeEc
Confidence            55789999999999994332       44345555554  2     33     344444433 5566677        99


Q ss_pred             CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497          445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG  524 (642)
Q Consensus       445 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~  524 (642)
                      ||| .+++....++.  +.+|++  |+.    ...  ....+..++|| ||+.++..+...     ...+||++++++ +
T Consensus       255 pdg-~~~~~~~~~g~--~~l~~~--g~~----~~~--~~~~v~~~~~s-dg~~l~~~s~~~-----~p~~l~~~d~~~-~  316 (582)
T 3o4h_A          255 PDG-RLAVVARREGR--SAVFID--GER----VEA--PQGNHGRVVLW-RGKLVTSHTSLS-----TPPRIVSLPSGE-P  316 (582)
T ss_dssp             TTS-CEEEEEEETTE--EEEEET--TEE----ECC--CSSEEEEEEEE-TTEEEEEEEETT-----EEEEEEEETTCC-E
T ss_pred             CCC-cEEEEEEcCCc--EEEEEE--CCe----ecc--CCCceEEEEec-CCEEEEEEcCCC-----CCCeEEEEcCCC-c
Confidence            999 77777766664  455555  663    322  22456678999 998776666554     567899999876 5


Q ss_pred             eEEe
Q 039497          525 LRRI  528 (642)
Q Consensus       525 ~~~l  528 (642)
                      .+++
T Consensus       317 ~~~l  320 (582)
T 3o4h_A          317 LLEG  320 (582)
T ss_dssp             EECC
T ss_pred             eEEE
Confidence            4444

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=5.3e-18  Score=188.46  Aligned_cols=298  Identities=13%  Similarity=0.141  Sum_probs=193.9

Q ss_pred             cceEEEEeec-CCceeeeEEEecCCCCCCCCCceeeecCCceeee---------ecee--cCCCCCe-EEEEEccCCCcc
Q 039497            4 KGTIVFTTVG-RPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINF---------NAQF--VDGQDQT-IAFISERSGSPR   70 (642)
Q Consensus         4 ~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~---------~~~~--S~pDG~~-laf~~~~~g~~~   70 (642)
                      ++.|+|+... .......||.+ ..+     +..++||.+.....         .++|  | |||++ |||++.+  ..+
T Consensus        33 ~~~~~~~~~~~~~~~~~~l~~~-~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~S-PDg~~~la~~~~~--~~~  103 (662)
T 3azo_A           33 GDEVWWVAPRPAEAGRATLVRR-RAD-----GAEESALPAPWNVRNRVFEYSGFPWAGVPR-PAGGPLLVFTHFG--DQR  103 (662)
T ss_dssp             TTEEEEEEEETTTTTEEEEEEE-CTT-----SCEEESSCTTCCBCCCGGGTCCCCEEEECC-SSSSCEEEEEBTT--TCC
T ss_pred             CCeEEEEecCcccCCcEEEEEE-CCC-----CCcceeCCCCccccccccccCCccceeeee-cCCCeEEEEEECC--CCe
Confidence            5678888542 11224689998 555     88999998875544         4444  6 99999 9998754  578


Q ss_pred             eEEEcCC--C-CcccccCCCC---CCcccccccc--CCCEEEEEEeccCCCcccccccceEEEEccC------CceEecc
Q 039497           71 IYQTRPG--S-SKTELLPSIP---CSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKA------SKFTRLT  136 (642)
Q Consensus        71 l~~~~~~--g-~~~~~~~~~~---~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~lt  136 (642)
                      ||.++.+  | .....+....   +......+++  +|+.|+|.+.............+||++++.+      ++.++|+
T Consensus       104 l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~  183 (662)
T 3azo_A          104 LYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS  183 (662)
T ss_dssp             EEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS
T ss_pred             EEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE
Confidence            9999766  3 3344444321   1111123333  7888998886521100111123799999999      8889998


Q ss_pred             -cCCCccCCceeCCCCcEEEEEecCCC--CCCCCCCCCeeeEEEEEec-CC---CceeEeecCC---CcceEeeCCeEEE
Q 039497          137 -PYGVVDYSPSVSYSGKFIAVASYESR--PWPGEFHELNTDIVVFQES-DP---NKRVIVCERG---GWPTWSGDSTIYF  206 (642)
Q Consensus       137 -~~~~~~~~~~~SPDG~~la~~~~~~~--~~~~~~~~~~~~l~~~~~~-~g---~~~~l~~~~~---~~~~wspdg~~~~  206 (642)
                       .+......|+|||||++|||.+....  .|      ...+||+++++ +|   +.++++....   ..+.|+|||+++|
T Consensus       184 ~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~------~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~  257 (662)
T 3azo_A          184 DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW------EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIV  257 (662)
T ss_dssp             CSCSSEECCCEECTTSSEEEEEEECTTCCTT------TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEE
T ss_pred             ecCCCcccCceECCCCCEEEEEECCCCCCCC------CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEE
Confidence             76666788999999999999875431  11      24689999999 57   5666665432   3579999999777


Q ss_pred             EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccC
Q 039497          207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYN  286 (642)
Q Consensus       207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  286 (642)
                      +. ..++.++||++++.++        ..++++........+.|+++..                               
T Consensus       258 ~~-~~~~~~~l~~~~~~~~--------~~~~l~~~~~~~~~p~w~~~~~-------------------------------  297 (662)
T 3azo_A          258 AT-DRTGWWNLHRVDPATG--------AATQLCRREEEFAGPLWTPGMR-------------------------------  297 (662)
T ss_dssp             EE-CTTSSCEEEEECTTTC--------CEEESSCCSSBSSCCCCSTTCC-------------------------------
T ss_pred             EE-CCCCCeEEEEEECCCC--------ceeecccccccccCccccccCc-------------------------------
Confidence            77 5567889999998776        5566655433333333333221                               


Q ss_pred             CeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe
Q 039497          287 PFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR  366 (642)
Q Consensus       287 ~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~  366 (642)
                                                                     .+.|+|+++ ++|.... +...||++++++++.
T Consensus       298 -----------------------------------------------~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~~~~  328 (662)
T 3azo_A          298 -----------------------------------------------WFAPLANGL-IAVVHGK-GAAVLGILDPESGEL  328 (662)
T ss_dssp             -----------------------------------------------SEEECTTSC-EEEEEBS-SSCEEEEEETTTTEE
T ss_pred             -----------------------------------------------eEeEeCCCE-EEEEEEc-CccEEEEEECCCCcE
Confidence                                                           225677776 4444444 678899999888876


Q ss_pred             eEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          367 WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       367 ~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      +.+..........|+++++.+++....     ......+|.++.
T Consensus       329 ~~l~~~~~~~~~~~s~~~~~~~~~~~~-----~~~~~~i~~~d~  367 (662)
T 3azo_A          329 VDAAGPWTEWAATLTVSGTRAVGVAAS-----PRTAYEVVELDT  367 (662)
T ss_dssp             EECCSSCCEEEEEEEEETTEEEEEEEE-----TTEEEEEEEEET
T ss_pred             EEecCCCCeEEEEEecCCCEEEEEEcC-----CCCCCEEEEEEC
Confidence            666543222222348889988887642     355667888876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=7.1e-18  Score=170.22  Aligned_cols=319  Identities=13%  Similarity=0.059  Sum_probs=191.9

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      +.|.+++..+|+....++  .|..++..+++       ....+..+.... .++|+|||++|+++....+    .+++||
T Consensus         3 ~~~~~~~~~~~v~~~~~~--~v~~~d~~~~~-------~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~----~i~~~d   68 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLR--RISFFSTDTLE-------ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQ----TLVQIE   68 (331)
T ss_dssp             ----CCCCEEEEEEGGGT--EEEEEETTTCC-------EEEEEECCCCEE-EEEECSSSCEEEEEESTTC----EEEEEE
T ss_pred             eeEcCCCCEEEEEecCCC--eEEEEeCcccc-------eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCC----eEEEEE
Confidence            456677766555544455  77788888773       223333333334 7889999998887654322    777777


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCc-cEEcCCCCEEEEEecCC-Cc
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSF-PSFSPDGGLIVFNHDFE-LN  353 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~~-~~  353 (642)
                      +....              .+.                .         .+. ....... +.|+|||++|+ +.... +.
T Consensus        69 ~~~~~--------------~~~----------------~---------~~~-~~~~~~~~~~~s~dg~~l~-~~~~~~~~  107 (331)
T 3u4y_A           69 TQLEP--------------PKV----------------V---------AIQ-EGQSSMADVDITPDDQFAV-TVTGLNHP  107 (331)
T ss_dssp             CSSSS--------------CEE----------------E---------EEE-ECSSCCCCEEECTTSSEEE-ECCCSSSS
T ss_pred             CCCCc--------------eeE----------------E---------ecc-cCCCCccceEECCCCCEEE-EecCCCCc
Confidence            62211              000                0         000 0111234 68999999888 44322 22


Q ss_pred             eeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCe-EEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          354 AGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT-VQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ..|+++++++++...... ......+.|+|||++|+++..      .... +.+|+++.  +      +.........+.
T Consensus       108 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------~~~~~i~~~~~~~--~------g~~~~~~~~~~~  173 (331)
T 3u4y_A          108 FNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR------SSANTVRRFKIDA--D------GVLFDTGQEFIS  173 (331)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE------TTTTEEEEEEECT--T------CCEEEEEEEEEC
T ss_pred             ccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec------CCCceEEEEEECC--C------CcEeecCCcccc
Confidence            389999999887655544 555688999999998888764      2456 88999865  2      211000112222


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVE  511 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~  511 (642)
                       .. .....+.|+|||++|++....+  ..|++||+.+++....+..+.. ......++|+|||++|++....       
T Consensus       174 -~~-~~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~-------  241 (331)
T 3u4y_A          174 -GG-TRPFNITFTPDGNFAFVANLIG--NSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTES-------  241 (331)
T ss_dssp             -SS-SSEEEEEECTTSSEEEEEETTT--TEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSS-------
T ss_pred             -CC-CCccceEECCCCCEEEEEeCCC--CeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcC-------
Confidence             22 3466789999999998887543  4799999988773000123332 2445678999999988877653       


Q ss_pred             ceeEEEEeCCCCceEEeeecCCCC-CCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          512 AFSLYVIKPDGSGLRRIHVAGPEG-SGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       512 ~~~l~~~d~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                      ...|+++|+.+++.+.+....... ...........++|||||++|+++....+                .|.+|++.+.
T Consensus       242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~----------------~v~v~d~~~~  305 (331)
T 3u4y_A          242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR----------------ELKVFTISGK  305 (331)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT----------------EEEEEETTSC
T ss_pred             CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC----------------cEEEEEecCC
Confidence            234999999988775543321110 00000011234799999999988876543                7899999887


Q ss_pred             ceeeccCCCCCCCCcEEecCC
Q 039497          591 GLRRLTWNGYENGTPAWHPGN  611 (642)
Q Consensus       591 ~~~~lt~~~~~~~~~~~s~dg  611 (642)
                      ....+...........++||+
T Consensus       306 ~~~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          306 VVGYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             EEEECTTCCCBSCEEECCCC-
T ss_pred             cccceecccccCCeEEECCcc
Confidence            766655433222233445554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=2.3e-19  Score=196.29  Aligned_cols=278  Identities=14%  Similarity=0.084  Sum_probs=184.9

Q ss_pred             ccccceeecCCcEEEEEEeccCCceeeEEEEEee-------cCCC-CcccCCeecCCCCEEEEEEee-cCCCCCCcccce
Q 039497          244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT-------LNPN-FHHYNPFVSANSEFIGYHRFR-GESTEGQSTIPH  314 (642)
Q Consensus       244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~-------~~~~-~~~~~~~~spDg~~l~~~~~~-~~~~~~~~~~~~  314 (642)
                      .+..+++||||++|+|+..+.+    .+.+|++.       +... ..+..++||||  +++|.... +..   ....+|
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g----~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~---~~~~l~   93 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEG----SVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGA---EQHALF   93 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETT----EEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTS---CCEEEE
T ss_pred             chheeecCCCCCeEEEEEccCC----ceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCCCC---cceEEE
Confidence            4667889999999999876443    56777772       1222 35677899999  56676553 221   113455


Q ss_pred             Eeec--cCCCceeEEeee-CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEE
Q 039497          315 LEPV--ASPVKELRMLRL-NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTS  391 (642)
Q Consensus       315 ~~~~--~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~  391 (642)
                      ....  .+....  +... ......|+|||+.++|++...+  .+.++|+++++.++++.... ..+.|||||++|++.+
T Consensus        94 ~~~~~~~g~~~~--l~~~~~~~~~~~s~dg~~~~~~s~~~~--~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~  168 (582)
T 3o4h_A           94 KVNTSRPGEEQR--LEAVKPMRILSGVDTGEAVVFTGATED--RVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             EEETTSTTCCEE--CTTSCSBEEEEEEECSSCEEEEEECSS--CEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEE
T ss_pred             EEeccCCCcccc--ccCCCCceeeeeCCCCCeEEEEecCCC--CceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEE
Confidence            5555  433222  2111 1134589999999888765433  34466888888777776333 8899999999999887


Q ss_pred             cCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497          392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE  471 (642)
Q Consensus       392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~  471 (642)
                      ..     ......||.++.  +     ++     ..+.|+... .....++|||||++|+ .+.+++..+||+||+++|+
T Consensus       169 ~~-----~~~~~~i~~~d~--~-----~g-----~~~~l~~~~-~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          169 FF-----GGGRVSLFTSNL--S-----SG-----GLRVFDSGE-GSFSSASISPGMKVTA-GLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             EE-----ETTEEEEEEEET--T-----TC-----CCEEECCSS-CEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCC
T ss_pred             Ec-----CCCCeEEEEEcC--C-----CC-----CceEeecCC-CccccceECCCCCEEE-EccCCCeeEEEEEcCCCCc
Confidence            52     122344666665  2     34     566777666 6678899999999999 5556666799999999888


Q ss_pred             cccceeeCCCCCCccccee--------EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccc
Q 039497          472 FNGDIRQLTDGPWIDTMPS--------WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER  543 (642)
Q Consensus       472 ~~~~~~~l~~~~~~~~~~~--------~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~  543 (642)
                      .    +.+......+..+.        ||||| .+++......       .+.+|++  ++... +   ..+       .
T Consensus       230 ~----~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g-------~~~l~~~--g~~~~-~---~~~-------~  284 (582)
T 3o4h_A          230 V----EDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREG-------RSAVFID--GERVE-A---PQG-------N  284 (582)
T ss_dssp             E----EECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETT-------EEEEEET--TEEEC-C---CSS-------E
T ss_pred             E----EEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCC-------cEEEEEE--CCeec-c---CCC-------c
Confidence            5    55555555666677        99999 5666655432       2666676  44332 1   122       4


Q ss_pred             ccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497          544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL  595 (642)
Q Consensus       544 ~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  595 (642)
                      +..++|| ||+.++..+.....              ..||.++.++ +.++|
T Consensus       285 v~~~~~s-dg~~l~~~s~~~~p--------------~~l~~~d~~~-~~~~l  320 (582)
T 3o4h_A          285 HGRVVLW-RGKLVTSHTSLSTP--------------PRIVSLPSGE-PLLEG  320 (582)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEE--------------EEEEEETTCC-EEECC
T ss_pred             eEEEEec-CCEEEEEEcCCCCC--------------CeEEEEcCCC-ceEEE
Confidence            5688999 99888766665432              3899998876 55555

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.83  E-value=3.5e-18  Score=171.75  Aligned_cols=266  Identities=10%  Similarity=0.100  Sum_probs=187.1

Q ss_pred             eCCCCCccccceeecC----CcEEEEEEeccCCceeeEEEEEee----------cCCCCcccCCeecCCCCEEEEEEeec
Q 039497          238 VTPPGVHCFTPAAFHD----GKRLAVATRRKNRNFRHIEIYDLT----------LNPNFHHYNPFVSANSEFIGYHRFRG  303 (642)
Q Consensus       238 l~~~~~~~~~~~~Spd----G~~l~~~~~~~~~~~~~i~~~d~~----------~~~~~~~~~~~~spDg~~l~~~~~~~  303 (642)
                      +..+...+..++|+|+    ++.|+....++     .+++|++.          .++...+....|++++..++....++
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~-----~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDD-----LVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCC-----CEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            3455557788888875    56777755444     78898872          34555667788999999888765544


Q ss_pred             CCCCCCcccceEeeccCCCceeEEee---eCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceee
Q 039497          304 ESTEGQSTIPHLEPVASPVKELRMLR---LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYN  378 (642)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~  378 (642)
                      .      ..+|  .+.... .+....   .....+.|+|||++|+....   ...|.++++..++......  ...+..+
T Consensus       103 ~------i~lW--d~~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~g~~---dg~v~i~~~~~~~~~~~~~~~~~~v~~~  170 (321)
T 3ow8_A          103 H------IRLW--DLENGK-QIKSIDAGPVDAWTLAFSPDSQYLATGTH---VGKVNIFGVESGKKEYSLDTRGKFILSI  170 (321)
T ss_dssp             E------EEEE--ETTTTE-EEEEEECCTTCCCCEEECTTSSEEEEECT---TSEEEEEETTTCSEEEEEECSSSCEEEE
T ss_pred             c------EEEE--ECCCCC-EEEEEeCCCccEEEEEECCCCCEEEEEcC---CCcEEEEEcCCCceeEEecCCCceEEEE
Confidence            3      2333  332221 111111   12245789999998887643   4678888998877554433  4567889


Q ss_pred             eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC
Q 039497          379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG  458 (642)
Q Consensus       379 ~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g  458 (642)
                      .|+|||+.|+..+.       ++.+++|++..        +.     ....+..+. ..+..+.|+|||++|+..+.   
T Consensus       171 ~~spdg~~lasg~~-------dg~i~iwd~~~--------~~-----~~~~~~~h~-~~v~~l~~spd~~~l~s~s~---  226 (321)
T 3ow8_A          171 AYSPDGKYLASGAI-------DGIINIFDIAT--------GK-----LLHTLEGHA-MPIRSLTFSPDSQLLVTASD---  226 (321)
T ss_dssp             EECTTSSEEEEEET-------TSCEEEEETTT--------TE-----EEEEECCCS-SCCCEEEECTTSCEEEEECT---
T ss_pred             EECCCCCEEEEEcC-------CCeEEEEECCC--------Cc-----EEEEEcccC-CceeEEEEcCCCCEEEEEcC---
Confidence            99999999998874       67899998854        22     445555554 67788999999998887764   


Q ss_pred             ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497          459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD  538 (642)
Q Consensus       459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  538 (642)
                      +..|.+||+.+++.   ...+..+...+..++|+|||++|+..+.++.        |.+||+.+++...... ++..   
T Consensus       227 dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~--------v~iwd~~~~~~~~~~~-~h~~---  291 (321)
T 3ow8_A          227 DGYIKIYDVQHANL---AGTLSGHASWVLNVAFCPDDTHFVSSSSDKS--------VKVWDVGTRTCVHTFF-DHQD---  291 (321)
T ss_dssp             TSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSC--------EEEEETTTTEEEEEEC-CCSS---
T ss_pred             CCeEEEEECCCcce---eEEEcCCCCceEEEEECCCCCEEEEEeCCCc--------EEEEeCCCCEEEEEEc-CCCC---
Confidence            33799999998876   5667777777888999999999998887765        9999998776544332 3444   


Q ss_pred             cccccccceEEcCCCCEEEEEEecC
Q 039497          539 VDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       539 ~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                          .+..+.|+|||+.|+..+.++
T Consensus       292 ----~v~~v~~s~~g~~l~s~~~d~  312 (321)
T 3ow8_A          292 ----QVWGVKYNGNGSKIVSVGDDQ  312 (321)
T ss_dssp             ----CEEEEEECTTSSEEEEEETTC
T ss_pred             ----cEEEEEECCCCCEEEEEeCCC
Confidence                678899999999998777654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.83  E-value=1.8e-17  Score=171.39  Aligned_cols=268  Identities=13%  Similarity=0.101  Sum_probs=180.3

Q ss_pred             eeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCcccccee
Q 039497          173 TDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAA  250 (642)
Q Consensus       173 ~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  250 (642)
                      ..|++|++.+++..+......  ..++|+|||+.+++....++  .|+.++..+++       ....+..+. .+..++|
T Consensus        12 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~--~i~v~d~~~~~-------~~~~~~~~~-~v~~~~~   81 (391)
T 1l0q_A           12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSN--DVSIIDTATNN-------VIATVPAGS-SPQGVAV   81 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGT--EEEEEETTTTE-------EEEEEECSS-SEEEEEE
T ss_pred             CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCC--eEEEEECCCCe-------EEEEEECCC-CccceEE
Confidence            379999999887666554333  24699999976655434456  67778887773       233333333 6778899


Q ss_pred             ecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee
Q 039497          251 FHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL  330 (642)
Q Consensus       251 SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (642)
                      +|||++|+++....    ..|++||+...              +.+...                 ...          .
T Consensus        82 spdg~~l~~~~~~~----~~v~v~d~~~~--------------~~~~~~-----------------~~~----------~  116 (391)
T 1l0q_A           82 SPDGKQVYVTNMAS----STLSVIDTTSN--------------TVAGTV-----------------KTG----------K  116 (391)
T ss_dssp             CTTSSEEEEEETTT----TEEEEEETTTT--------------EEEEEE-----------------ECS----------S
T ss_pred             CCCCCEEEEEECCC----CEEEEEECCCC--------------eEEEEE-----------------eCC----------C
Confidence            99999998865432    37888887221              111111                 000          0


Q ss_pred             CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       331 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      ....+.|+|||++|++...  ....|+++|+.+++...... ...+..+.|+|||+.|+++..      .++.+.+|++.
T Consensus       117 ~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~------~~~~v~~~d~~  188 (391)
T 1l0q_A          117 SPLGLALSPDGKKLYVTNN--GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF------DSMSISVIDTV  188 (391)
T ss_dssp             SEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET------TTTEEEEEETT
T ss_pred             CcceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC------CCCEEEEEECC
Confidence            1124589999998877653  34689999998887655544 556788999999999987763      36778888774


Q ss_pred             eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce
Q 039497          410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP  489 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~  489 (642)
                      .         +     ......... .....+.|+|||++|+..........|++||+.+++.   +..+..+ .....+
T Consensus       189 ~---------~-----~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~---~~~~~~~-~~~~~~  249 (391)
T 1l0q_A          189 T---------N-----SVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI---TARIPVG-PDPAGI  249 (391)
T ss_dssp             T---------T-----EEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE---EEEEECC-SSEEEE
T ss_pred             C---------C-----eEEEEEecC-CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE---EEEEecC-CCccEE
Confidence            4         2     222222223 4567789999999999887533455899999998875   4444443 345678


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  529 (642)
                      .|+|||++|++.....+       .|++||+.+++.....
T Consensus       250 ~~s~dg~~l~~s~~~d~-------~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          250 AVTPDGKKVYVALSFXN-------TVSVIDTATNTITATM  282 (391)
T ss_dssp             EECTTSSEEEEEETTTT-------EEEEEETTTTEEEEEE
T ss_pred             EEccCCCEEEEEcCCCC-------EEEEEECCCCcEEEEE
Confidence            99999999987765432       4999999987765443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.6e-17  Score=169.90  Aligned_cols=304  Identities=14%  Similarity=0.078  Sum_probs=206.7

Q ss_pred             eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEE
Q 039497          132 FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHR  208 (642)
Q Consensus       132 ~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~  208 (642)
                      ...|..+.......+|||||++||....++            .|.+|++.+++.......+..   .++|+|++.++++.
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~   92 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDS------------SASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG   92 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSS------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCC------------EEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEE
Confidence            445666666677889999999999887655            799999998886665543332   45999999888777


Q ss_pred             ecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCe
Q 039497          209 QADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPF  288 (642)
Q Consensus       209 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  288 (642)
                       ..+|  .|..+++.++.       ....+. ....+..++|+|+|++|+............+.+||+........    
T Consensus        93 -~~dg--~i~iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~----  157 (369)
T 3zwl_B           93 -SADY--SIKLWDVSNGQ-------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHE----  157 (369)
T ss_dssp             -ETTT--EEEEEETTTCC-------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCC----
T ss_pred             -eCCC--eEEEEECCCCc-------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcccee----
Confidence             4567  55556666662       223333 55567789999999999987665333345899999844321110    


Q ss_pred             ecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCC-CC
Q 039497          289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SK  365 (642)
Q Consensus       289 ~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~  365 (642)
                             +...  ...                ....+.....  ....+.|+|+|+.|+....   ...|.++|+.. .+
T Consensus       158 -------~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~  209 (369)
T 3zwl_B          158 -------LTKV--SEE----------------PIHKIITHEGLDAATVAGWSTKGKYIIAGHK---DGKISKYDVSNNYE  209 (369)
T ss_dssp             -------EEEE--CSS----------------CSEEEECCTTCCCEEEEEECGGGCEEEEEET---TSEEEEEETTTTTE
T ss_pred             -------eccc--ccc----------------eeeeccCCcCccceeEEEEcCCCCEEEEEcC---CCEEEEEECCCCcE
Confidence                   0000  000                0000000000  1134589999998887654   36789999987 34


Q ss_pred             eeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEE
Q 039497          366 RWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSC  443 (642)
Q Consensus       366 ~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  443 (642)
                      ......  ...+..+.|+|+++.|+..+.       ++.+.+|++..        +.     ....+. .. .....+.|
T Consensus       210 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~v~d~~~--------~~-----~~~~~~-~~-~~~~~~~~  267 (369)
T 3zwl_B          210 YVDSIDLHEKSISDMQFSPDLTYFITSSR-------DTNSFLVDVST--------LQ-----VLKKYE-TD-CPLNTAVI  267 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEET-------TSEEEEEETTT--------CC-----EEEEEE-CS-SCEEEEEE
T ss_pred             eEEEEecCCCceeEEEECCCCCEEEEecC-------CceEEEEECCC--------Cc-----eeeeec-CC-CCceeEEe
Confidence            333322  567889999999999988874       67899998754        22     333333 33 56778999


Q ss_pred             CCCCCeEEEEeCCC-----------CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497          444 SPDGKFLVFRSGRS-----------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA  512 (642)
Q Consensus       444 SpDg~~l~~~~~~~-----------g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~  512 (642)
                      +|+++++++.....           +...+.+||..+++.   +..+..+...+..++|+|||++|+..+.++.      
T Consensus       268 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~------  338 (369)
T 3zwl_B          268 TPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE---IGRVQGHFGPLNTVAISPQGTSYASGGEDGF------  338 (369)
T ss_dssp             CSSSSEEEEEECCC-------------CEEEEEETTTCCE---EEEEECCSSCEEEEEECTTSSEEEEEETTSE------
T ss_pred             cCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc---hhheecccCcEEEEEECCCCCEEEEEcCCCe------
Confidence            99999999887543           122789999998886   6667767777888999999999988887654      


Q ss_pred             eeEEEEeCCCC
Q 039497          513 FSLYVIKPDGS  523 (642)
Q Consensus       513 ~~l~~~d~~~~  523 (642)
                        |.+|+++.+
T Consensus       339 --v~iw~~~~~  347 (369)
T 3zwl_B          339 --IRLHHFEKS  347 (369)
T ss_dssp             --EEEEEECHH
T ss_pred             --EEEEECccc
Confidence              889988754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.82  E-value=9.1e-18  Score=168.70  Aligned_cols=275  Identities=12%  Similarity=0.046  Sum_probs=191.0

Q ss_pred             cCCCCcccCCeecCC----CCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCC
Q 039497          278 LNPNFHHYNPFVSAN----SEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFE  351 (642)
Q Consensus       278 ~~~~~~~~~~~~spD----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~  351 (642)
                      ..+...+...+|+|+    ++.|+....++.      ..+|-...........+...  ......|++++..++..+.  
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~------v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~--  100 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDL------VKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL--  100 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSC------EEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET--
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCC------EEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC--
Confidence            445556667788875    456666554443      44453321110000011111  1135688999998777654  


Q ss_pred             CceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497          352 LNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI  429 (642)
Q Consensus       352 ~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  429 (642)
                       ...|.++|+.+++......  ...+..+.|+||++.|+....       ++.+.+|++..        +.     ....
T Consensus       101 -D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-------dg~v~i~~~~~--------~~-----~~~~  159 (321)
T 3ow8_A          101 -DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-------VGKVNIFGVES--------GK-----KEYS  159 (321)
T ss_dssp             -TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-------TSEEEEEETTT--------CS-----EEEE
T ss_pred             -CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-------CCcEEEEEcCC--------Cc-----eeEE
Confidence             3678889998876544433  445778999999999988763       67899998855        22     3444


Q ss_pred             ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCC
Q 039497          430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN  509 (642)
Q Consensus       430 l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~  509 (642)
                      +.... ..+..++|+|||++|+..+.+   ..|.+||+.+++.   +..+..+...+..++|+|||++|+..+.++.   
T Consensus       160 ~~~~~-~~v~~~~~spdg~~lasg~~d---g~i~iwd~~~~~~---~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~---  229 (321)
T 3ow8_A          160 LDTRG-KFILSIAYSPDGKYLASGAID---GIINIFDIATGKL---LHTLEGHAMPIRSLTFSPDSQLLVTASDDGY---  229 (321)
T ss_dssp             EECSS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEE---EEEECCCSSCCCEEEECTTSCEEEEECTTSC---
T ss_pred             ecCCC-ceEEEEEECCCCCEEEEEcCC---CeEEEEECCCCcE---EEEEcccCCceeEEEEcCCCCEEEEEcCCCe---
Confidence            44444 567789999999999987743   4799999999886   6677777777889999999999988877665   


Q ss_pred             CCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          510 VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       510 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                           |.+||+..++...... ++..       .+..++|+|||++|+..+.++                 .|.+|++..
T Consensus       230 -----i~iwd~~~~~~~~~~~-~h~~-------~v~~~~~sp~~~~l~s~s~D~-----------------~v~iwd~~~  279 (321)
T 3ow8_A          230 -----IKIYDVQHANLAGTLS-GHAS-------WVLNVAFCPDDTHFVSSSSDK-----------------SVKVWDVGT  279 (321)
T ss_dssp             -----EEEEETTTCCEEEEEC-CCSS-------CEEEEEECTTSSEEEEEETTS-----------------CEEEEETTT
T ss_pred             -----EEEEECCCcceeEEEc-CCCC-------ceEEEEECCCCCEEEEEeCCC-----------------cEEEEeCCC
Confidence                 9999998776654332 3444       578899999999988877654                 688889887


Q ss_pred             Cc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          590 SG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       590 ~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      +. +..+..+...+..++|+|||++|++....+
T Consensus       280 ~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~  312 (321)
T 3ow8_A          280 RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ  312 (321)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            65 455666667778999999999998766544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=1e-17  Score=186.16  Aligned_cols=312  Identities=13%  Similarity=0.078  Sum_probs=197.8

Q ss_pred             ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-----------cceEe--e
Q 039497          134 RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG-----------WPTWS--G  200 (642)
Q Consensus       134 ~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-----------~~~ws--p  200 (642)
                      .+..+......|++|+|  +++|+..+..      ..+...||.+ ..+++.++++.....           .+.|+  |
T Consensus        18 ~~~~~~~~~~~~~~s~~--~~~~~~~~~~------~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP   88 (662)
T 3azo_A           18 LVASRSGRPACVGAVGD--EVWWVAPRPA------EAGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP   88 (662)
T ss_dssp             HHHHTCSCCEEEEEETT--EEEEEEEETT------TTTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS
T ss_pred             HHhhcCCccceeEEcCC--eEEEEecCcc------cCCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeec
Confidence            34445555667889865  6776654210      0135567776 667777777764321           24577  9


Q ss_pred             CCe--EEEEEecCCCceEEEEEecC--C-CcccccCCccceeeCC-----CCCccccceeecCCcEEEEEEeccC-----
Q 039497          201 DST--IYFHRQADDGWWSIFRVSFP--E-NLEFLGFPIAPTRVTP-----PGVHCFTPAAFHDGKRLAVATRRKN-----  265 (642)
Q Consensus       201 dg~--~~~~~~~~~g~~~l~~~~~~--~-~~~~~~~~~~~~~l~~-----~~~~~~~~~~SpdG~~l~~~~~~~~-----  265 (642)
                      ||+  ++|+. ..  ..+||.++..  + +        ...+++.     +......++|||||++|+++..+..     
T Consensus        89 Dg~~~la~~~-~~--~~~l~~~~~~~~g~~--------~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~  157 (662)
T 3azo_A           89 AGGPLLVFTH-FG--DQRLYAFEPDAPGGA--------VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS  157 (662)
T ss_dssp             SSSCEEEEEB-TT--TCCEEEECTTSTTCC--------CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred             CCCeEEEEEE-CC--CCeEEEEcCCCCCCC--------CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence            995  45544 32  4589999987  4 6        5677776     3445667899999999999775421     


Q ss_pred             CceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc-CCCceeEEeeeCCCccEEcCCCCEE
Q 039497          266 RNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA-SPVKELRMLRLNGSFPSFSPDGGLI  344 (642)
Q Consensus       266 ~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l  344 (642)
                      .....|++||+........                   .      ..   ..+. ...       .....+.|||||++|
T Consensus       158 ~~~~~i~~~~~~~~~~~~~-------------------~------~~---~~l~~~~~-------~~~~~~~~SpDG~~l  202 (662)
T 3azo_A          158 DVRRFLAAVPLDGSAAADR-------------------S------AV---RELSDDAH-------RFVTGPRLSPDGRQA  202 (662)
T ss_dssp             CEEEEEEEEETTSTTTTCG-------------------G------GS---EESSCSCS-------SEECCCEECTTSSEE
T ss_pred             CceeEEEEEECCCCccccC-------------------C------ce---eEEEecCC-------CcccCceECCCCCEE
Confidence            2234666666521000000                   0      00   0000 000       011357899999999


Q ss_pred             EEEecCC-----CceeEEEEECC-CC---CeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          345 VFNHDFE-----LNAGIKIAKSD-GS---KRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       345 ~~~~~~~-----~~~~l~~~d~~-~~---~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      +|.....     ....||+++++ ++   +.+++..  ...+..+.|||||+ ++|.+..      ++...||.++.  +
T Consensus       203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~------~~~~~l~~~~~--~  273 (662)
T 3azo_A          203 VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDR------TGWWNLHRVDP--A  273 (662)
T ss_dssp             EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECT------TSSCEEEEECT--T
T ss_pred             EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECC------CCCeEEEEEEC--C
Confidence            9977533     34689999998 46   5555654  35678899999999 7777742      44557777765  3


Q ss_pred             CCCCCCCCccccceEEccccCCCC---------ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497          414 PSDDNNREEIPCDVKILTKEETGN---------NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                           ++     ..+.++... ..         ...++|+|||+. ++.... +..+||.+++++++    ++.|+.+..
T Consensus       274 -----~~-----~~~~l~~~~-~~~~~p~w~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~d~~~~~----~~~l~~~~~  336 (662)
T 3azo_A          274 -----TG-----AATQLCRRE-EEFAGPLWTPGMRWFAPLANGLI-AVVHGK-GAAVLGILDPESGE----LVDAAGPWT  336 (662)
T ss_dssp             -----TC-----CEEESSCCS-SBSSCCCCSTTCCSEEECTTSCE-EEEEBS-SSCEEEEEETTTTE----EEECCSSCC
T ss_pred             -----CC-----ceeeccccc-ccccCccccccCceEeEeCCCEE-EEEEEc-CccEEEEEECCCCc----EEEecCCCC
Confidence                 33     455665543 22         235677788764 455556 88899999998777    488876544


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                      .+. ..|++|++.++|......    ....||++|+++++.+.++..
T Consensus       337 ~~~-~~~s~~~~~~~~~~~~~~----~~~~i~~~d~~~g~~~~l~~~  378 (662)
T 3azo_A          337 EWA-ATLTVSGTRAVGVAASPR----TAYEVVELDTVTGRARTIGAR  378 (662)
T ss_dssp             EEE-EEEEEETTEEEEEEEETT----EEEEEEEEETTTCCEEEEESC
T ss_pred             eEE-EEEecCCCEEEEEEcCCC----CCCEEEEEECCCCceEEeecC
Confidence            333 233888988888876543    567899999999998888753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.81  E-value=3.6e-18  Score=178.48  Aligned_cols=308  Identities=11%  Similarity=0.028  Sum_probs=197.4

Q ss_pred             CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC--cceEeeCCeEEEEEecCCCceEEEEE
Q 039497          143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFRV  220 (642)
Q Consensus       143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~~l~~~  220 (642)
                      ..++|||||++||....+.            .|++|++.+++..+.......  ...|++|+.++++. ..+|.  |..+
T Consensus        60 ~~~~~s~~g~~l~~~~~d~------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~--i~iw  124 (420)
T 3vl1_A           60 KGNTFEKVGSHLYKARLDG------------HDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILG-TTEGD--IKVL  124 (420)
T ss_dssp             TTCEEEEEETTEEEEEETT------------EEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEE-ETTSC--EEEE
T ss_pred             cceeeeecCCeEEEEEcCC------------cEEEEEecccceeeEEecCCceEEEEEecCCCEEEEE-ECCCC--EEEE
Confidence            4689999999999887665            799999887765444332221  34789999888877 45674  4555


Q ss_pred             ecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEE
Q 039497          221 SFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHR  300 (642)
Q Consensus       221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~  300 (642)
                      ++.++.       ....+..+...+..++|+|+|++|+....++     .+.+||+.....              +.   
T Consensus       125 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~--------------~~---  175 (420)
T 3vl1_A          125 DSNFNL-------QREIDQAHVSEITKLKFFPSGEALISSSQDM-----QLKIWSVKDGSN--------------PR---  175 (420)
T ss_dssp             CTTSCE-------EEEETTSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCC--------------CE---
T ss_pred             eCCCcc-------eeeecccccCccEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCcC--------------ce---
Confidence            666662       2233356666788899999999888865444     899999832110              00   


Q ss_pred             eecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---------
Q 039497          301 FRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---------  371 (642)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---------  371 (642)
                                   .+   ....       .....+.|+|+|+.|+....   ...|.++|+.+++......         
T Consensus       176 -------------~~---~~h~-------~~v~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~v  229 (420)
T 3vl1_A          176 -------------TL---IGHR-------ATVTDIAIIDRGRNVLSASL---DGTIRLWECGTGTTIHTFNRKENPHDGV  229 (420)
T ss_dssp             -------------EE---ECCS-------SCEEEEEEETTTTEEEEEET---TSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred             -------------EE---cCCC-------CcEEEEEEcCCCCEEEEEcC---CCcEEEeECCCCceeEEeecCCCCCCCc
Confidence                         00   0000       01124578888888876554   3567777887765444332         


Q ss_pred             -----------------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497          372 -----------------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE  434 (642)
Q Consensus       372 -----------------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  434 (642)
                                       ...+..+.|+|+|+.|+....       ++.+++|++..        +.     ....+....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~i~d~~~--------~~-----~~~~~~~~~  289 (420)
T 3vl1_A          230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-------SGVITVHNVFS--------KE-----QTIQLPSKF  289 (420)
T ss_dssp             EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-------TSCEEEEETTT--------CC-----EEEEECCTT
T ss_pred             cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-------CCeEEEEECCC--------Cc-----eeEEccccc
Confidence                             134556788999999888764       67899999855        22     344443332


Q ss_pred             CCCccCcEECCCCC-eEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497          435 TGNNAFPSCSPDGK-FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA  512 (642)
Q Consensus       435 ~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~  512 (642)
                      ...+..+.|+|+|+ +|+..+ .+  ..|++||+.+++.  .+..+.. +...+.. .++++|++|+..+.++       
T Consensus       290 ~~~v~~~~~~~~~~~~l~~g~-~d--g~i~vwd~~~~~~--~~~~~~~~~~~~v~~-~~~~~~~~l~s~~~d~-------  356 (420)
T 3vl1_A          290 TCSCNSLTVDGNNANYIYAGY-EN--GMLAQWDLRSPEC--PVGEFLINEGTPINN-VYFAAGALFVSSGFDT-------  356 (420)
T ss_dssp             SSCEEEEEECSSCTTEEEEEE-TT--SEEEEEETTCTTS--CSEEEEESTTSCEEE-EEEETTEEEEEETTTE-------
T ss_pred             CCCceeEEEeCCCCCEEEEEe-CC--CeEEEEEcCCCcC--chhhhhccCCCCceE-EEeCCCCEEEEecCCc-------
Confidence            25678899999999 665555 33  4899999988752  1244443 2233344 4666888777665544       


Q ss_pred             eeEEEEeCCCCce----------EEeeecCCCCCCCcccccccceEEcCCCC---EEEEEEecC
Q 039497          513 FSLYVIKPDGSGL----------RRIHVAGPEGSGDVDRERINHVCFSADGE---WLLFTANLG  563 (642)
Q Consensus       513 ~~l~~~d~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~---~l~~~~~~~  563 (642)
                       .|.+|++.....          ..+.  ....       .+..+.|+|||+   .|+.+...+
T Consensus       357 -~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~~-------~v~~~~~s~~~~~~g~l~a~g~~g  410 (420)
T 3vl1_A          357 -SIKLDIISDPESERPAIEFETPTFLV--SNDD-------AVSQFCYVSDDESNGEVLEVGKNN  410 (420)
T ss_dssp             -EEEEEEECCTTCCSCEECTTSCEEEC--CSSC-------CCCEEEEECCSSSSCEEEEEETTT
T ss_pred             -cEEEEeccCCCCCccceeccCccEEc--cCCc-------ceEEEEEccCCCCcceEEEEcCCc
Confidence             388898866311          1111  2222       567899999999   787777654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.81  E-value=2.9e-17  Score=172.35  Aligned_cols=303  Identities=13%  Similarity=0.047  Sum_probs=198.1

Q ss_pred             ceEEEEccCCceEecc--cCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec-----CC
Q 039497          121 ALYSTDLKASKFTRLT--PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-----RG  193 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt--~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-----~~  193 (642)
                      .||.++..++....+.  ........++|||++ .+++....           ...|++|++.+++..+....     +.
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~-----------~~~i~~~d~~~g~~~~~~~~~~~~~~~  169 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNT-RLAIPLLE-----------DEGMDVLDINSGQTVRLSPPEKYKKKL  169 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSS-EEEEEBTT-----------SSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCC-eEEEEeCC-----------CCeEEEEECCCCeEeeecCcccccccC
Confidence            6888877665333222  223334578999955 45544332           22699999999887764331     11


Q ss_pred             C---cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee
Q 039497          194 G---WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH  270 (642)
Q Consensus       194 ~---~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~  270 (642)
                      .   .++|+|+++++++. ..++  .|+.++..++.       ....+..+...+..++|+|+|++++++....    ..
T Consensus       170 ~~v~~~~~~~~~~~~~s~-~~d~--~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~  235 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQ-MQAN--AVHVFDLKTLA-------YKATVDLTGKWSKILLYDPIRDLVYCSNWIS----ED  235 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEE-GGGT--EEEEEETTTCC-------EEEEEECSSSSEEEEEEETTTTEEEEEETTT----TE
T ss_pred             CceeEEEEcCCCEEEEEE-CCCC--EEEEEECCCce-------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCC----Cc
Confidence            1   35899999988887 4456  66777777663       3445555555677889999999887765332    27


Q ss_pred             EEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC
Q 039497          271 IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF  350 (642)
Q Consensus       271 i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  350 (642)
                      |++||+...              +.+                   ..+... ..       ...+.|+|+|+.|++....
T Consensus       236 i~~~d~~~~--------------~~~-------------------~~~~~~-~~-------~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          236 ISVIDRKTK--------------LEI-------------------RKTDKI-GL-------PRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             EEEEETTTT--------------EEE-------------------EECCCC-SE-------EEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCC--------------cEE-------------------EEecCC-CC-------ceEEEEcCCCCEEEEEECC
Confidence            888886211              100                   000000 00       1245899999988886542


Q ss_pred             C-----CceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccc
Q 039497          351 E-----LNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIP  424 (642)
Q Consensus       351 ~-----~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  424 (642)
                      .     ....|+++|+.+++...... ...+..+.|+|+++.++++..      .++.+.+|++..         +.   
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~------~~~~v~v~d~~~---------~~---  336 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM------CCSKIEVYDLKE---------KK---  336 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET------TTTEEEEEETTT---------TE---
T ss_pred             CCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec------CCCEEEEEECCC---------Cc---
Confidence            2     35689999998877655443 456778999999999988863      377888888743         21   


Q ss_pred             cceEEccccCCCCccCcEECCCCCeEEEEeCCCC------------ceeEEEEECCCCccccceeeCCCCCCcccceeEe
Q 039497          425 CDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG------------HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS  492 (642)
Q Consensus       425 ~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g------------~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s  492 (642)
                       ....+. .. .....++|+|||++|++.....+            +..|++||+.+++.   +..+.. ...+..++|+
T Consensus       337 -~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~---~~~~~~-~~~~~~~~~s  409 (433)
T 3bws_A          337 -VQKSIP-VF-DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV---KEFWEA-GNQPTGLDVS  409 (433)
T ss_dssp             -EEEEEE-CS-SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE---EEEEEC-SSSEEEEEEC
T ss_pred             -EEEEec-CC-CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE---EEEecC-CCCCceEEEc
Confidence             233333 33 45678999999999988876433            23899999998885   444443 3456788999


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      |||++|++.+....       .|++|++++
T Consensus       410 ~dg~~l~~~~~~d~-------~i~v~~~~~  432 (433)
T 3bws_A          410 PDNRYLVISDFLDH-------QIRVYRRDG  432 (433)
T ss_dssp             TTSCEEEEEETTTT-------EEEEEEETT
T ss_pred             CCCCEEEEEECCCC-------eEEEEEecC
Confidence            99999988875332       388888753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.81  E-value=1.9e-17  Score=185.18  Aligned_cols=303  Identities=14%  Similarity=0.070  Sum_probs=194.5

Q ss_pred             CCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC----C-----CcceEeeCCe-EEEEEecCCCc--e
Q 039497          148 SYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER----G-----GWPTWSGDST-IYFHRQADDGW--W  215 (642)
Q Consensus       148 SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~----~-----~~~~wspdg~-~~~~~~~~~g~--~  215 (642)
                      +|||++++|.....       ......||+++..+++.+.++...    +     ..++|||||+ ++|.. ...|.  .
T Consensus        80 ~~dG~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~-~~~G~~~~  151 (710)
T 2xdw_A           80 FKKGKRYFYFYNTG-------LQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGL-SASGSDWV  151 (710)
T ss_dssp             EEETTEEEEEEECS-------SCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEE-EETTCSCE
T ss_pred             EEECCEEEEEEEcC-------CceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEE-cCCCCceE
Confidence            59999999987644       112347888888888877665422    1     2469999996 44554 33443  4


Q ss_pred             EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCC-----------ceeeEEEEEeecCCCCcc
Q 039497          216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNR-----------NFRHIEIYDLTLNPNFHH  284 (642)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~-----------~~~~i~~~d~~~~~~~~~  284 (642)
                      .|+.+++.++        +....+........++|||||+.|+|+......           ....|+++++        
T Consensus       152 ~i~v~d~~tg--------~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l--------  215 (710)
T 2xdw_A          152 TIKFMKVDGA--------KELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVL--------  215 (710)
T ss_dssp             EEEEEETTTT--------EEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEET--------
T ss_pred             EEEEEECCCC--------CCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEEC--------
Confidence            9999999998        444433333235678999999999997755421           1122333333        


Q ss_pred             cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce-eEEeeeC-----CCccEEcCCCCEEEEEecCCC--ceeE
Q 039497          285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE-LRMLRLN-----GSFPSFSPDGGLIVFNHDFEL--NAGI  356 (642)
Q Consensus       285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~spdg~~l~~~~~~~~--~~~l  356 (642)
                                                        ...... ..+....     ...+.|||||++|++......  ...|
T Consensus       216 ----------------------------------~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l  261 (710)
T 2xdw_A          216 ----------------------------------GTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRL  261 (710)
T ss_dssp             ----------------------------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEE
T ss_pred             ----------------------------------CCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEE
Confidence                                              111100 0010110     024689999999999775332  5799


Q ss_pred             EEEECCC------C--CeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497          357 KIAKSDG------S--KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK  428 (642)
Q Consensus       357 ~~~d~~~------~--~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  428 (642)
                      |++++++      +  ..+.+..........|+|||+.|++.+..     +.....|+.++.  +     ++..  ...+
T Consensus       262 ~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~-----~~~~~~l~~~d~--~-----~~~~--~~~~  327 (710)
T 2xdw_A          262 WYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNR-----HSPNYRLINIDF--T-----DPEE--SKWK  327 (710)
T ss_dssp             EEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECT-----TCTTCEEEEEET--T-----SCCG--GGCE
T ss_pred             EEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECC-----CCCCCEEEEEeC--C-----CCCc--ccce
Confidence            9999986      4  45666553333344699999999999853     223456666665  2     1210  0235


Q ss_pred             EccccCC-CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCC
Q 039497          429 ILTKEET-GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP  507 (642)
Q Consensus       429 ~l~~~~~-~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~  507 (642)
                      .+..+.. ..+..+.|++ +.+|++...+++..+|+++++.+|+.   ++.|......+..+.++||++.|+|...... 
T Consensus       328 ~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~---~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~-  402 (710)
T 2xdw_A          328 VLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL---LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFL-  402 (710)
T ss_dssp             EEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE---EEEECCCSSEEEEEECCTTCSEEEEEEECSS-
T ss_pred             eccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE---EEecCCCCceEEEEecCCCCCEEEEEEeCCC-
Confidence            5554431 2455678885 55677777777888999999966764   4667655556677889999999888866543 


Q ss_pred             CCCCceeEEEEeCCCCc--eEEeee
Q 039497          508 DNVEAFSLYVIKPDGSG--LRRIHV  530 (642)
Q Consensus       508 ~~~~~~~l~~~d~~~~~--~~~l~~  530 (642)
                         .+..||++|+.+++  .+.+..
T Consensus       403 ---~P~~i~~~d~~tg~~~~~~l~~  424 (710)
T 2xdw_A          403 ---SPGIIYHCDLTKEELEPRVFRE  424 (710)
T ss_dssp             ---CCCEEEEEETTSSSCCCEEEEE
T ss_pred             ---CCCEEEEEECCCCccceEEeee
Confidence               56789999999887  666654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.81  E-value=6.1e-19  Score=184.01  Aligned_cols=300  Identities=11%  Similarity=0.061  Sum_probs=184.3

Q ss_pred             CCceeCCCCc-EEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeE---eecCC--CcceEeeCCeEEEEEecCCCceE
Q 039497          143 YSPSVSYSGK-FIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVI---VCERG--GWPTWSGDSTIYFHRQADDGWWS  216 (642)
Q Consensus       143 ~~~~~SPDG~-~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l---~~~~~--~~~~wspdg~~~~~~~~~~g~~~  216 (642)
                      ...+|||||+ +||.....+..-..  ......|.+|++.+++..+.   .....  ..++|+||+.++++. ..+|...
T Consensus        16 ~~~~~sp~g~~~l~~g~~~g~~~~~--~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~   92 (416)
T 2pm9_A           16 ATFAWSHDKIPLLVSGTVSGTVDAN--FSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGA-LDNGSLE   92 (416)
T ss_dssp             CBCCBCSSSSCEEEEBCBSSCCCSS--CCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEE-ESSSCEE
T ss_pred             ceEeeCCCCCCEEEEEecCcccccc--cCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEE-ccCCeEE
Confidence            4579999998 56654221100000  01234789999988753211   11112  246999999877776 4577666


Q ss_pred             EEEEecCC-CcccccCCccceeeCCCCCccccceeecC-CcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCC
Q 039497          217 IFRVSFPE-NLEFLGFPIAPTRVTPPGVHCFTPAAFHD-GKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSE  294 (642)
Q Consensus       217 l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~Spd-G~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~  294 (642)
                      ||.+.... +..      ....+..+...+..++|+|+ +++|+....+     ..|.+||+..........        
T Consensus        93 vw~~~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~--------  153 (416)
T 2pm9_A           93 LYSTNEANNAIN------SMARFSNHSSSVKTVKFNAKQDNVLASGGNN-----GEIFIWDMNKCTESPSNY--------  153 (416)
T ss_dssp             EECCSSTTSCCC------EEEECCCSSSCCCEEEECSSSTTBEEEECSS-----SCEEBCBTTTTSSCTTTC--------
T ss_pred             Eeeccccccccc------chhhccCCccceEEEEEcCCCCCEEEEEcCC-----CeEEEEECCCCccccccc--------
Confidence            66554311 110      34455666667888999998 7777764433     378888884322000000        


Q ss_pred             EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCC-CCEEEEEecCCCceeEEEEECCCCCeeEEee--
Q 039497          295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--  371 (642)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--  371 (642)
                                      ....+.....       .......+.|+|+ ++.|+....   ...|.++|+..++......  
T Consensus       154 ----------------~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~  207 (416)
T 2pm9_A          154 ----------------TPLTPGQSMS-------SVDEVISLAWNQSLAHVFASAGS---SNFASIWDLKAKKEVIHLSYT  207 (416)
T ss_dssp             ----------------CCBCCCCSCC-------SSCCCCEEEECSSCTTEEEEESS---SSCEEEEETTTTEEEEEECCC
T ss_pred             ----------------cccccccccC-------CCCCeeEEEeCCCCCcEEEEEcC---CCCEEEEECCCCCcceEEecc
Confidence                            0000000000       0112235689999 555555432   4678899998876544433  


Q ss_pred             ------cCCceeeeeecCCC-EEEEEEcCCCcccCCC---eEEEEEEEeecCCCCCCCCCccccceEEcc-ccCCCCccC
Q 039497          372 ------DRTAFYNSWSPTEK-HVIYTSTGPIFQSERA---TVQIARVSFQLDPSDDNNREEIPCDVKILT-KEETGNNAF  440 (642)
Q Consensus       372 ------~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~  440 (642)
                            ...+..+.|+|++. .|+....       ++   .+++|++..        +..    ....+. .+. ..+..
T Consensus       208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------d~~~~~i~~~d~~~--------~~~----~~~~~~~~~~-~~v~~  267 (416)
T 2pm9_A          208 SPNSGIKQQLSVVEWHPKNSTRVATATG-------SDNDPSILIWDLRN--------ANT----PLQTLNQGHQ-KGILS  267 (416)
T ss_dssp             CCSSCCCCCEEEEEECSSCTTEEEEEEC-------CSSSCCCCEEETTS--------TTS----CSBCCCSCCS-SCEEE
T ss_pred             ccccccCCceEEEEECCCCCCEEEEEEC-------CCCCceEEEEeCCC--------CCC----CcEEeecCcc-CceeE
Confidence                  24578899999985 5555542       44   889998865        111    334444 344 67788


Q ss_pred             cEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC-CEEEEEecCCCCCCCCceeEEEE
Q 039497          441 PSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG-DLIAFSSNRHNPDNVEAFSLYVI  518 (642)
Q Consensus       441 ~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~~~~~~~~~~l~~~  518 (642)
                      +.|+| |+++|+..+.   ...|.+||+.+++.   +..+..+...+..++|+|+| ++|+..+.++.        |.+|
T Consensus       268 ~~~s~~~~~~l~s~~~---dg~v~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~--------i~iw  333 (416)
T 2pm9_A          268 LDWCHQDEHLLLSSGR---DNTVLLWNPESAEQ---LSQFPARGNWCFKTKFAPEAPDLFACASFDNK--------IEVQ  333 (416)
T ss_dssp             EEECSSCSSCEEEEES---SSEEEEECSSSCCE---EEEEECSSSCCCCEEECTTCTTEEEECCSSSE--------EEEE
T ss_pred             EEeCCCCCCeEEEEeC---CCCEEEeeCCCCcc---ceeecCCCCceEEEEECCCCCCEEEEEecCCc--------EEEE
Confidence            99999 8888887764   34799999998886   66777777778899999999 66666665543        8999


Q ss_pred             eCCCCc
Q 039497          519 KPDGSG  524 (642)
Q Consensus       519 d~~~~~  524 (642)
                      ++....
T Consensus       334 ~~~~~~  339 (416)
T 2pm9_A          334 TLQNLT  339 (416)
T ss_dssp             ESCCCC
T ss_pred             EccCCC
Confidence            997654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.81  E-value=2.9e-17  Score=172.43  Aligned_cols=341  Identities=11%  Similarity=0.054  Sum_probs=209.0

Q ss_pred             ceeCCCCcEEEEEecCCCCCC----CCCCCCeeeEEEEEecCCCceeEee---cCC-CcceEeeCCeEEEEEecCCCceE
Q 039497          145 PSVSYSGKFIAVASYESRPWP----GEFHELNTDIVVFQESDPNKRVIVC---ERG-GWPTWSGDSTIYFHRQADDGWWS  216 (642)
Q Consensus       145 ~~~SPDG~~la~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~l~~---~~~-~~~~wspdg~~~~~~~~~~g~~~  216 (642)
                      |.|+|+++.+++.......-.    .....+...||.++..++..+.+..   ... ..++|+|+++++++. ..++  .
T Consensus        69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~--~  145 (433)
T 3bws_A           69 PVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPL-LEDE--G  145 (433)
T ss_dssp             ECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEB-TTSS--S
T ss_pred             eeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEe-CCCC--e
Confidence            448898888776653321000    0001112367778777664443332   111 256999977777776 4455  5


Q ss_pred             EEEEecCCCcccccCCccceeeC------CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeec
Q 039497          217 IFRVSFPENLEFLGFPIAPTRVT------PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS  290 (642)
Q Consensus       217 l~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s  290 (642)
                      |+.++..++        +..+..      .+...+..++|+|+|+.++....     ...+++||+..            
T Consensus       146 i~~~d~~~g--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-----d~~v~~~d~~~------------  200 (433)
T 3bws_A          146 MDVLDINSG--------QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ-----ANAVHVFDLKT------------  200 (433)
T ss_dssp             EEEEETTTC--------CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG-----GTEEEEEETTT------------
T ss_pred             EEEEECCCC--------eEeeecCcccccccCCceeEEEEcCCCEEEEEECC-----CCEEEEEECCC------------
Confidence            777787776        333322      23335666788999986665332     23788888622            


Q ss_pred             CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe
Q 039497          291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI  370 (642)
Q Consensus       291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~  370 (642)
                        ++.+....                   ...       .....+.|+|+|+++++...  ....|+++|+.+++.....
T Consensus       201 --~~~~~~~~-------------------~~~-------~~~~~~~~~~~~~~l~~~~~--~~~~i~~~d~~~~~~~~~~  250 (433)
T 3bws_A          201 --LAYKATVD-------------------LTG-------KWSKILLYDPIRDLVYCSNW--ISEDISVIDRKTKLEIRKT  250 (433)
T ss_dssp             --CCEEEEEE-------------------CSS-------SSEEEEEEETTTTEEEEEET--TTTEEEEEETTTTEEEEEC
T ss_pred             --ceEEEEEc-------------------CCC-------CCeeEEEEcCCCCEEEEEec--CCCcEEEEECCCCcEEEEe
Confidence              11111110                   000       01124589999998877653  2458999999887655444


Q ss_pred             e-cCCceeeeeecCCCEEEEEEcCCCccc-CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCC
Q 039497          371 K-DRTAFYNSWSPTEKHVIYTSTGPIFQS-ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK  448 (642)
Q Consensus       371 ~-~~~~~~~~~spdg~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~  448 (642)
                      . ...+..+.|+|+|+.|++......... .++.+.+|++..         +     +........ .....+.|+|||+
T Consensus       251 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~---------~-----~~~~~~~~~-~~~~~~~~~~~g~  315 (433)
T 3bws_A          251 DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK---------E-----KLIDTIGPP-GNKRHIVSGNTEN  315 (433)
T ss_dssp             CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT---------T-----EEEEEEEEE-ECEEEEEECSSTT
T ss_pred             cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC---------C-----cEEeeccCC-CCcceEEECCCCC
Confidence            3 455788999999999988874211111 245677777643         2     222222222 3566789999999


Q ss_pred             eEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC-------CCCceeEEEEeCC
Q 039497          449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD-------NVEAFSLYVIKPD  521 (642)
Q Consensus       449 ~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~-------~~~~~~l~~~d~~  521 (642)
                      +++++...++  .|++||+.+++.   ...+. .......++|+|||++|++........       ......|++||+.
T Consensus       316 ~l~~~~~~~~--~v~v~d~~~~~~---~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~  389 (433)
T 3bws_A          316 KIYVSDMCCS--KIEVYDLKEKKV---QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT  389 (433)
T ss_dssp             EEEEEETTTT--EEEEEETTTTEE---EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred             EEEEEecCCC--EEEEEECCCCcE---EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence            9988865443  899999998875   34443 344567889999999998887643100       0012369999998


Q ss_pred             CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       522 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                      +++.......  ..       .+..++|+|||++|++.....+                .|.+|++++
T Consensus       390 ~~~~~~~~~~--~~-------~~~~~~~s~dg~~l~~~~~~d~----------------~i~v~~~~~  432 (433)
T 3bws_A          390 TDTVKEFWEA--GN-------QPTGLDVSPDNRYLVISDFLDH----------------QIRVYRRDG  432 (433)
T ss_dssp             TTEEEEEEEC--SS-------SEEEEEECTTSCEEEEEETTTT----------------EEEEEEETT
T ss_pred             CCcEEEEecC--CC-------CCceEEEcCCCCEEEEEECCCC----------------eEEEEEecC
Confidence            8776655442  22       4678999999999987765322                677777653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.80  E-value=5.3e-18  Score=177.09  Aligned_cols=299  Identities=11%  Similarity=0.012  Sum_probs=205.8

Q ss_pred             CccccceeecCCc-EEEEEEeccCCceeeEEEEEe----ecCC------------------------CCcccCCeecCCC
Q 039497          243 VHCFTPAAFHDGK-RLAVATRRKNRNFRHIEIYDL----TLNP------------------------NFHHYNPFVSANS  293 (642)
Q Consensus       243 ~~~~~~~~SpdG~-~l~~~~~~~~~~~~~i~~~d~----~~~~------------------------~~~~~~~~~spDg  293 (642)
                      ..+..++|+|||+ +|+....++     .+.+|++    ....                        ...+..+.|+|||
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNS-----VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBT-----EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             CceEEEEECCCCCcEEEEecCCc-----eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            3577899999999 888865443     7888888    3322                        2356678899999


Q ss_pred             CEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe
Q 039497          294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI  370 (642)
Q Consensus       294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~  370 (642)
                      +.|+....++.      ..+|-  ..+.  .+.....   ....+.|+|+++.|+....   ...|.++++..++.....
T Consensus       121 ~~l~~~~~dg~------i~i~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~  187 (425)
T 1r5m_A          121 NSIVTGVENGE------LRLWN--KTGA--LLNVLNFHRAPIVSVKWNKDGTHIISMDV---ENVTILWNVISGTVMQHF  187 (425)
T ss_dssp             SEEEEEETTSC------EEEEE--TTSC--EEEEECCCCSCEEEEEECTTSSEEEEEET---TCCEEEEETTTTEEEEEE
T ss_pred             CEEEEEeCCCe------EEEEe--CCCC--eeeeccCCCccEEEEEECCCCCEEEEEec---CCeEEEEECCCCcEEEEe
Confidence            99998765443      33332  2222  1111111   1245789999998887654   367888999877654443


Q ss_pred             e--cCC---------------ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc
Q 039497          371 K--DRT---------------AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE  433 (642)
Q Consensus       371 ~--~~~---------------~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  433 (642)
                      .  ...               +..+.|+|++. ++...       .++.+.+|++..        +.     ....+..+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~g~i~~~d~~~--------~~-----~~~~~~~~  246 (425)
T 1r5m_A          188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPG-------PKGAIFVYQITE--------KT-----PTGKLIGH  246 (425)
T ss_dssp             CCC---------------CCCBSCCEEEETTE-EEEEC-------GGGCEEEEETTC--------SS-----CSEEECCC
T ss_pred             eccccCccceeeccccCCcceeeEEEEcCCCE-EEEEc-------CCCeEEEEEcCC--------Cc-----eeeeeccC
Confidence            3  222               77889999865 44443       267888888754        22     34445444


Q ss_pred             CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497          434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF  513 (642)
Q Consensus       434 ~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~  513 (642)
                      . ..+..+.|+|++++|+..+.   ...|.+|++.+++.   ...+..+...+..+.|+|+| .|+..+.++.       
T Consensus       247 ~-~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-------  311 (425)
T 1r5m_A          247 H-GPISVLEFNDTNKLLLSASD---DGTLRIWHGGNGNS---QNCFYGHSQSIVSASWVGDD-KVISCSMDGS-------  311 (425)
T ss_dssp             S-SCEEEEEEETTTTEEEEEET---TSCEEEECSSSBSC---SEEECCCSSCEEEEEEETTT-EEEEEETTSE-------
T ss_pred             C-CceEEEEECCCCCEEEEEcC---CCEEEEEECCCCcc---ceEecCCCccEEEEEECCCC-EEEEEeCCCc-------
Confidence            4 67788999999998887773   34799999988775   56666666778889999999 7776666543       


Q ss_pred             eEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc--
Q 039497          514 SLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG--  591 (642)
Q Consensus       514 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  591 (642)
                       |++||+.+++...... ....       .+..+.|+|||+.|+..+.++                 .|.+|++..+.  
T Consensus       312 -i~i~d~~~~~~~~~~~-~~~~-------~i~~~~~s~~~~~l~~~~~dg-----------------~i~i~~~~~~~~~  365 (425)
T 1r5m_A          312 -VRLWSLKQNTLLALSI-VDGV-------PIFAGRISQDGQKYAVAFMDG-----------------QVNVYDLKKLNSK  365 (425)
T ss_dssp             -EEEEETTTTEEEEEEE-CTTC-------CEEEEEECTTSSEEEEEETTS-----------------CEEEEECHHHHC-
T ss_pred             -EEEEECCCCcEeEecc-cCCc-------cEEEEEEcCCCCEEEEEECCC-----------------eEEEEECCCCccc
Confidence             9999998876655443 2233       578899999999988877654                 68888887654  


Q ss_pred             -------------------eeeccCCCC--CCCCcEEecCCceEEeecCCC
Q 039497          592 -------------------LRRLTWNGY--ENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       592 -------------------~~~lt~~~~--~~~~~~~s~dg~~~~~~~~~~  621 (642)
                                         +..+..+..  .+..++|+||+++|++....+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  416 (425)
T 1r5m_A          366 SRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ  416 (425)
T ss_dssp             -------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS
T ss_pred             eeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc
Confidence                               445555533  678999999999887765443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=2.1e-17  Score=167.91  Aligned_cols=313  Identities=12%  Similarity=0.088  Sum_probs=185.7

Q ss_pred             CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeCCe-EEEEEecC-CCceEEEEE
Q 039497          143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDST-IYFHRQAD-DGWWSIFRV  220 (642)
Q Consensus       143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspdg~-~~~~~~~~-~g~~~l~~~  220 (642)
                      ..|++  ||++|||.......   ........||++++.+++.+++  .....+.|||||+ ++|..... ++..+||.+
T Consensus        18 ~~~~~--dG~~i~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~   90 (347)
T 2gop_A           18 SDPRT--KGELVAYVLTKANL---KDNKYENTIVIENLKNNARRFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVA   90 (347)
T ss_dssp             EEEEE--ETTEEEEEEEEEET---TTTEEEEEEEEEETTTCCEEEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred             ccceE--CCcEEEEEEeecCc---ccCCccceEEEEeCCCCceEEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence            45778  99999998542100   0011356899999999988877  3334689999995 55655322 256789999


Q ss_pred             ecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEE
Q 039497          221 SFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHR  300 (642)
Q Consensus       221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~  300 (642)
                      ++.++        +..+++.... +..++|||||++|+|......                                   
T Consensus        91 ~~~~g--------~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~-----------------------------------  126 (347)
T 2gop_A           91 DLETL--------SSKKILEAKN-IRSLEWNEDSRKLLIVGFKRR-----------------------------------  126 (347)
T ss_dssp             ETTTT--------EEEEEEEESE-EEEEEECTTSSEEEEEEECCC-----------------------------------
T ss_pred             ECCCC--------ceEEEEcCCC-ccceeECCCCCEEEEEEccCC-----------------------------------
Confidence            99887        5555554433 556667777777776432210                                   


Q ss_pred             eecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEeecCCceeee
Q 039497          301 FRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIKDRTAFYNS  379 (642)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~  379 (642)
                        ...               ....  .     ....+..+|..+..    ....+|+++++++++. +.+... .+..+.
T Consensus       127 --~~~---------------~~~~--~-----~~~~~~~~g~~~~~----~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~  177 (347)
T 2gop_A          127 --EDE---------------DFIF--E-----DDVPAWFDDLGFFD----GEKTTFWIFDTESEEVIEEFEKP-RFSSGI  177 (347)
T ss_dssp             --C-------------------------------CCCC-------------CEEEEEEEETTTTEEEEEEEEE-TTCEEE
T ss_pred             --CcC---------------CcEE--E-----cccceeecCccccc----CccceEEEEECCCCeEEeeecCC-Cccccc
Confidence              000               0000  0     01122334432221    2347899999998887 666554 778899


Q ss_pred             eecCCCEEEEEEcCCCcccCCC-eEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC-
Q 039497          380 WSPTEKHVIYTSTGPIFQSERA-TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS-  457 (642)
Q Consensus       380 ~spdg~~l~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~-  457 (642)
                      |+|||  ++|+........... ...||.++.         +     ..+.+...  ...  ..+||||++|+|.+... 
T Consensus       178 ~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~---------~-----~~~~l~~~--~~~--~~~spdg~~l~~~~~~~~  237 (347)
T 2gop_A          178 WHRDK--IVVNVPHREIIPQYFKFWDIYIWED---------G-----KEEKMFEK--VSF--YAVDSDGERILLYGKPEK  237 (347)
T ss_dssp             EETTE--EEEEEECCCSSCCSSCCEEEEEEET---------T-----EEEEEEEE--ESE--EEEEECSSCEEEEECCSS
T ss_pred             CCCCe--EEEEEecccccccccccccEEEeCC---------C-----ceEEeccC--cce--eeECCCCCEEEEEEcccc
Confidence            99999  555553210000002 456777653         2     45555543  222  23499999999988653 


Q ss_pred             ----CceeEEEEECCCCccccceeeCCCC-CCcccc-eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          458 ----GHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       458 ----g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                          ....||++|  +|+.    +.++.. ...+.. +.|+ ||  +++.....     +..+|| ++ + ++.+.++..
T Consensus       238 ~~~~~~~~l~~~d--~~~~----~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~-----~~~~l~-~~-~-g~~~~~~~~  300 (347)
T 2gop_A          238 KYMSEHNKLYIYD--GKEV----MGILDEVDRGVGQAKIKD-GK--VYFTLFEE-----GSVNLY-IW-D-GEIKPIAKG  300 (347)
T ss_dssp             SCCCSSCEEEEEC--SSCE----EESSTTCCSEEEEEEEET-TE--EEEEEEET-----TEEEEE-EE-S-SSEEEEECS
T ss_pred             CCccccceEEEEC--CCce----EeccccCCcccCCccEEc-Cc--EEEEEecC-----CcEEEE-Ec-C-CceEEEecC
Confidence                245899999  5663    666654 345554 8999 88  55555443     456788 77 4 556656542


Q ss_pred             CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC
Q 039497          532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY  600 (642)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~  600 (642)
                        .+       .+..+.|++  + ++++....+.             ..+||.++   ++.++||....
T Consensus       301 --~~-------~v~~~~~s~--~-~~~~~~~~~~-------------~~~l~~~~---g~~~~lt~~n~  341 (347)
T 2gop_A          301 --RH-------WIMGFDVDE--I-VVYLKETATR-------------LRELFTWD---GEEKQLTDYND  341 (347)
T ss_dssp             --SS-------EEEEEEESS--S-EEEEEECSSS-------------CCEEEEES---SSEEECCCTTS
T ss_pred             --CC-------eEEeeeeeC--c-EEEEEcCCCC-------------hHHheEeC---CcEEEeccccH
Confidence              33       467788998  4 5555443322             13799887   56888887654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.80  E-value=7.4e-17  Score=166.82  Aligned_cols=276  Identities=13%  Similarity=0.167  Sum_probs=184.0

Q ss_pred             EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497          204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH  283 (642)
Q Consensus       204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~  283 (642)
                      ++++....++  .|+.++..+++       ....+..+ ..+..++|+|||++|+++....    ..|++||+..     
T Consensus         3 ~l~vs~~~d~--~v~v~d~~~~~-------~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d----~~i~v~d~~~-----   63 (391)
T 1l0q_A            3 FAYIANSESD--NISVIDVTSNK-------VTATIPVG-SNPMGAVISPDGTKVYVANAHS----NDVSIIDTAT-----   63 (391)
T ss_dssp             EEEEEETTTT--EEEEEETTTTE-------EEEEEECS-SSEEEEEECTTSSEEEEEEGGG----TEEEEEETTT-----
T ss_pred             EEEEEcCCCC--EEEEEECCCCe-------EEEEeecC-CCcceEEECCCCCEEEEECCCC----CeEEEEECCC-----
Confidence            3444435566  67777877773       23333333 3467789999999887765333    3788888622     


Q ss_pred             ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497          284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG  363 (642)
Q Consensus       284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~  363 (642)
                               ++.+...                 ....          ....+.|+|||++|++...  ....|+++|+.+
T Consensus        64 ---------~~~~~~~-----------------~~~~----------~v~~~~~spdg~~l~~~~~--~~~~v~v~d~~~  105 (391)
T 1l0q_A           64 ---------NNVIATV-----------------PAGS----------SPQGVAVSPDGKQVYVTNM--ASSTLSVIDTTS  105 (391)
T ss_dssp             ---------TEEEEEE-----------------ECSS----------SEEEEEECTTSSEEEEEET--TTTEEEEEETTT
T ss_pred             ---------CeEEEEE-----------------ECCC----------CccceEECCCCCEEEEEEC--CCCEEEEEECCC
Confidence                     1111110                 0000          1124589999999888653  246799999998


Q ss_pred             CCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE
Q 039497          364 SKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS  442 (642)
Q Consensus       364 ~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  442 (642)
                      ++...... ...+..+.|+|||+.|+++..      .++.+.+|++..         +.    ....+..+  .....+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~---------~~----~~~~~~~~--~~~~~~~  164 (391)
T 1l0q_A          106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNN------GDKTVSVINTVT---------KA----VINTVSVG--RSPKGIA  164 (391)
T ss_dssp             TEEEEEEECSSSEEEEEECTTSSEEEEEET------TTTEEEEEETTT---------TE----EEEEEECC--SSEEEEE
T ss_pred             CeEEEEEeCCCCcceEEECCCCCEEEEEeC------CCCEEEEEECCC---------Cc----EEEEEecC--CCcceEE
Confidence            87655544 556788999999999988773      367888887643         21    23333333  3557789


Q ss_pred             ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       443 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      |+|||++|++....+  ..|++||+.+++.   ...+. .......++|+|||++|++.....     ....|++||+.+
T Consensus       165 ~~~dg~~l~~~~~~~--~~v~~~d~~~~~~---~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~-----~~~~v~~~d~~~  233 (391)
T 1l0q_A          165 VTPDGTKVYVANFDS--MSISVIDTVTNSV---IDTVK-VEAAPSGIAVNPEGTKAYVTNVDK-----YFNTVSMIDTGT  233 (391)
T ss_dssp             ECTTSSEEEEEETTT--TEEEEEETTTTEE---EEEEE-CSSEEEEEEECTTSSEEEEEEECS-----SCCEEEEEETTT
T ss_pred             ECCCCCEEEEEeCCC--CEEEEEECCCCeE---EEEEe-cCCCccceEECCCCCEEEEEecCc-----CCCcEEEEECCC
Confidence            999999998776544  4799999998875   33333 334567789999999999887521     123599999988


Q ss_pred             CceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497          523 SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR  593 (642)
Q Consensus       523 ~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  593 (642)
                      ++........  .       .+..+.|+|||++|+++....+                .|.+||+..+++.
T Consensus       234 ~~~~~~~~~~--~-------~~~~~~~s~dg~~l~~s~~~d~----------------~v~v~d~~~~~~~  279 (391)
T 1l0q_A          234 NKITARIPVG--P-------DPAGIAVTPDGKKVYVALSFXN----------------TVSVIDTATNTIT  279 (391)
T ss_dssp             TEEEEEEECC--S-------SEEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEE
T ss_pred             CeEEEEEecC--C-------CccEEEEccCCCEEEEEcCCCC----------------EEEEEECCCCcEE
Confidence            7665444322  1       3467899999999987765432                7999999877643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.80  E-value=1e-16  Score=162.87  Aligned_cols=306  Identities=12%  Similarity=0.070  Sum_probs=189.3

Q ss_pred             ecccCCC-ccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeE--e-ecCC---CcceEeeCCeEEE
Q 039497          134 RLTPYGV-VDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVI--V-CERG---GWPTWSGDSTIYF  206 (642)
Q Consensus       134 ~lt~~~~-~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l--~-~~~~---~~~~wspdg~~~~  206 (642)
                      .|..+.. .....+|||||++||....+.            .|.+|++.++.....  . ..+.   ..++|+|||.+++
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~------------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~   77 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDR------------RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA   77 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTS------------CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCC------------eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEE
Confidence            3444443 345689999999999988766            688999988753321  1 1222   2459999999888


Q ss_pred             EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccC
Q 039497          207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYN  286 (642)
Q Consensus       207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  286 (642)
                      +. ..++...||.++.....       ....+..+...+..++|+|||++|+....++     .+++||+.....     
T Consensus        78 s~-s~D~~v~iw~~~~~~~~-------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~-----  139 (345)
T 3fm0_A           78 SA-SFDATTCIWKKNQDDFE-------CVTTLEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVDEEDE-----  139 (345)
T ss_dssp             EE-ETTSCEEEEEECCC-EE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECTTSC-----
T ss_pred             EE-ECCCcEEEEEccCCCeE-------EEEEccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEECCCCCC-----
Confidence            87 56787788876544321       3445666766788899999999999866554     799999832110     


Q ss_pred             CeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe
Q 039497          287 PFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR  366 (642)
Q Consensus       287 ~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~  366 (642)
                               ...                +..+......       ...+.|+|+++.|+..+. +  ..|.+++...++.
T Consensus       140 ---------~~~----------------~~~~~~h~~~-------v~~~~~~p~~~~l~s~s~-d--~~i~~w~~~~~~~  184 (345)
T 3fm0_A          140 ---------YEC----------------VSVLNSHTQD-------VKHVVWHPSQELLASASY-D--DTVKLYREEEDDW  184 (345)
T ss_dssp             ---------EEE----------------EEEECCCCSC-------EEEEEECSSSSCEEEEET-T--SCEEEEEEETTEE
T ss_pred             ---------eEE----------------EEEecCcCCC-------eEEEEECCCCCEEEEEeC-C--CcEEEEEecCCCE
Confidence                     000                0000000011       124589999998887664 2  4566667666543


Q ss_pred             eEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCC---CC-CccccceEEccccCCCCc
Q 039497          367 WTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDN---NR-EEIPCDVKILTKEETGNN  438 (642)
Q Consensus       367 ~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~  438 (642)
                      ..+..    ...+..+.|+|||+.|+..+.       ++.+++|++..  .+....   .+ .........+.......+
T Consensus       185 ~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~-------D~~v~iW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  255 (345)
T 3fm0_A          185 VCCATLEGHESTVWSLAFDPSGQRLASCSD-------DRTVRIWRQYL--PGNEQGVACSGSDPSWKCICTLSGFHSRTI  255 (345)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSCEEEEEEEC--TTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred             EEEEEecCCCCceEEEEECCCCCEEEEEeC-------CCeEEEecccc--CCCCccceeeccCCccceeEEecCCCCCcE
Confidence            32221    556889999999999988874       78999999865  210000   00 000001112222122567


Q ss_pred             cCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccc------ceeeCCCCCCcccceeEecCCC-EEEEEecCCCCCCCC
Q 039497          439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG------DIRQLTDGPWIDTMPSWSPKGD-LIAFSSNRHNPDNVE  511 (642)
Q Consensus       439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~------~~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~  511 (642)
                      ..++|+|++..|+..+.+   ..|.+|+...+..+.      .......+...+..++|+|++. .|+..+.++.     
T Consensus       256 ~~v~~~~~~~~l~s~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~-----  327 (345)
T 3fm0_A          256 YDIAWCQLTGALATACGD---DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE-----  327 (345)
T ss_dssp             EEEEECTTTCCEEEEETT---SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC-----
T ss_pred             EEEEEecCCCEEEEEeCC---CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc-----
Confidence            789999999999887743   357777765443100      0111234556778899999985 7777776664     


Q ss_pred             ceeEEEEeCCCCc
Q 039497          512 AFSLYVIKPDGSG  524 (642)
Q Consensus       512 ~~~l~~~d~~~~~  524 (642)
                         |.+|++..++
T Consensus       328 ---v~~W~~~~~~  337 (345)
T 3fm0_A          328 ---VAFWKYQRPE  337 (345)
T ss_dssp             ---EEEEEECC--
T ss_pred             ---EEEEEecCCC
Confidence               8999987654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6.5e-18  Score=176.20  Aligned_cols=313  Identities=12%  Similarity=0.061  Sum_probs=196.8

Q ss_pred             ccccceeecCCcEEEEEEeccC------CceeeEEEEEeec----------CCCCcccCCeecCCCCEEEEEEeecCCCC
Q 039497          244 HCFTPAAFHDGKRLAVATRRKN------RNFRHIEIYDLTL----------NPNFHHYNPFVSANSEFIGYHRFRGESTE  307 (642)
Q Consensus       244 ~~~~~~~SpdG~~l~~~~~~~~------~~~~~i~~~d~~~----------~~~~~~~~~~~spDg~~l~~~~~~~~~~~  307 (642)
                      .+..++|||||+.++++....+      .....+++||+..          .+...+..+.|+|||+.|+....++.   
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---   90 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS---   90 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC---
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe---
Confidence            3567889999984444443323      4556899999832          23344667889999999988765544   


Q ss_pred             CCcccceEeeccC-CCceeEEee---eCCCccEEcCC-CCEEEEEecCCCceeEEEEECCCCC------eeEEe-----e
Q 039497          308 GQSTIPHLEPVAS-PVKELRMLR---LNGSFPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSK------RWTLI-----K  371 (642)
Q Consensus       308 ~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~------~~~l~-----~  371 (642)
                         ..+|...... ....+....   .....+.|+|+ ++.|+....   ...|.++|+..++      .....     .
T Consensus        91 ---v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  164 (416)
T 2pm9_A           91 ---LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN---NGEIFIWDMNKCTESPSNYTPLTPGQSMSS  164 (416)
T ss_dssp             ---EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS---SSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred             ---EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC---CCeEEEEECCCCccccccccccccccccCC
Confidence               2333222100 111221111   12256789999 676665443   4678888988775      22211     1


Q ss_pred             cCCceeeeeecCC-CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-----CCCccCcEECC
Q 039497          372 DRTAFYNSWSPTE-KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-----TGNNAFPSCSP  445 (642)
Q Consensus       372 ~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~Sp  445 (642)
                      ...+..+.|+|++ +.|+...       .++.+++|++..        +.     ....+....     ...+..+.|+|
T Consensus       165 ~~~v~~~~~~~~~~~~l~~~~-------~dg~v~iwd~~~--------~~-----~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          165 VDEVISLAWNQSLAHVFASAG-------SSNFASIWDLKA--------KK-----EVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             SCCCCEEEECSSCTTEEEEES-------SSSCEEEEETTT--------TE-----EEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             CCCeeEEEeCCCCCcEEEEEc-------CCCCEEEEECCC--------CC-----cceEEeccccccccCCceEEEEECC
Confidence            4568899999994 5555443       377899998854        12     334443331     25677899999


Q ss_pred             CCC-eEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccceeEec-CCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          446 DGK-FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       446 Dg~-~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      +|. .|+..+.......|.+||+.+++.  ....+. .+...+..+.|+| ++++|+..+.++.        |++||+.+
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~--------v~~wd~~~  294 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNANT--PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT--------VLLWNPES  294 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTTS--CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE--------EEEECSSS
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCCC--CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC--------EEEeeCCC
Confidence            985 455554332233789999987632  034455 5666778899999 8998888887654        99999988


Q ss_pred             CceEEeeecCCCCCCCcccccccceEEcCCC-CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc-C---
Q 039497          523 SGLRRIHVAGPEGSGDVDRERINHVCFSADG-EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT-W---  597 (642)
Q Consensus       523 ~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt-~---  597 (642)
                      ++...... .+..       .+..+.|+||+ +.|+..+.++                 .|.+|++......... .   
T Consensus       295 ~~~~~~~~-~~~~-------~v~~~~~s~~~~~~l~s~~~d~-----------------~i~iw~~~~~~~~~~~~~~~~  349 (416)
T 2pm9_A          295 AEQLSQFP-ARGN-------WCFKTKFAPEAPDLFACASFDN-----------------KIEVQTLQNLTNTLDEQETET  349 (416)
T ss_dssp             CCEEEEEE-CSSS-------CCCCEEECTTCTTEEEECCSSS-----------------EEEEEESCCCCCSSCC-----
T ss_pred             Cccceeec-CCCC-------ceEEEEECCCCCCEEEEEecCC-----------------cEEEEEccCCCCCcccccccc
Confidence            76654433 3333       57889999999 6665555443                 6778887765422110 0   


Q ss_pred             --------------------------------CCCCCCCcEEecCCceEEeecCC
Q 039497          598 --------------------------------NGYENGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       598 --------------------------------~~~~~~~~~~s~dg~~~~~~~~~  620 (642)
                                                      ....+..++|||||+++++....
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d  404 (416)
T 2pm9_A          350 KQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDG  404 (416)
T ss_dssp             -----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTS
T ss_pred             cccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCC
Confidence                                            12233578999999999876543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.79  E-value=8.7e-17  Score=164.60  Aligned_cols=194  Identities=15%  Similarity=0.109  Sum_probs=136.8

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..+|||||++++..+. .....|.++|+.+++...... ...+..+.|||||+.|+..+        +..+.+|....  
T Consensus       138 ~v~fSpDg~~la~as~-~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s--------~~~~~~~~~~~--  206 (365)
T 4h5i_A          138 LVYISREGTVAAIASS-KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT--------GSSLEVISTVT--  206 (365)
T ss_dssp             EEEECTTSSCEEEEES-CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC--------SSCEEEEETTT--
T ss_pred             EEEEcCCCCEEEEEEC-CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc--------ceeEEEEEecc--
Confidence            3589999999888664 334678999998887654443 66789999999999998876        34566665433  


Q ss_pred             CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC-ceeEEEEECCCCccc-cceeeCCCCCCccccee
Q 039497          413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG-HKNLFVLDAVNGEFN-GDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g-~~~l~~~d~~~g~~~-~~~~~l~~~~~~~~~~~  490 (642)
                            +. .   ............+..++|+|||+.++..+...+ ...++.|++..+... .....+..+...+..++
T Consensus       207 ------~~-~---~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~  276 (365)
T 4h5i_A          207 ------GS-C---IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMD  276 (365)
T ss_dssp             ------CC-E---EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEE
T ss_pred             ------Cc-c---eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEE
Confidence                  12 0   112222222245677899999999988775433 346788888765420 01233455556678899


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      |||||++|+..+.++.        |.+||+.+++.......++..       .+..++|||||++|+..+.++
T Consensus       277 ~Spdg~~lasgs~D~~--------V~iwd~~~~~~~~~~~~gH~~-------~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          277 VDMKGELAVLASNDNS--------IALVKLKDLSMSKIFKQAHSF-------AITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             ECTTSCEEEEEETTSC--------EEEEETTTTEEEEEETTSSSS-------CEEEEEECTTSCEEEEEETTS
T ss_pred             ECCCCCceEEEcCCCE--------EEEEECCCCcEEEEecCcccC-------CEEEEEECCCCCEEEEEeCCC
Confidence            9999999999988765        999999887654433335555       688999999999999888776

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.79  E-value=1.2e-16  Score=162.94  Aligned_cols=279  Identities=13%  Similarity=0.046  Sum_probs=192.5

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL  315 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~  315 (642)
                      ..+..+...+..++|+|||++|+....++     .+.+||....              +.+...                
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg-----~v~vWd~~~~--------------~~~~~~----------------  102 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDG-----KVIVWDSFTT--------------NKEHAV----------------  102 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTC--------------CEEEEE----------------
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCCC-----eEEEEECCCC--------------CcceEE----------------
Confidence            44566666788889999999888865544     7888886221              111000                


Q ss_pred             eeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCC-------eeEEee-cCCceeeeeecCCCEE
Q 039497          316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-------RWTLIK-DRTAFYNSWSPTEKHV  387 (642)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-------~~~l~~-~~~~~~~~~spdg~~l  387 (642)
                       .         ..........|+|+|+.|+.... +  ..+.++++....       ...+.. ...+..+.|+|+++.|
T Consensus       103 -~---------~~~~~v~~~~~sp~g~~lasg~~-d--~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  169 (354)
T 2pbi_B          103 -T---------MPCTWVMACAYAPSGCAIACGGL-D--NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI  169 (354)
T ss_dssp             -E---------CSSSCCCEEEECTTSSEEEEEST-T--SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEE
T ss_pred             -e---------cCCCCEEEEEECCCCCEEEEeeC-C--CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEE
Confidence             0         00011234589999998887654 3  455556554321       122222 5668889999999999


Q ss_pred             EEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC--CCCeEEEEeCCCCceeEEEE
Q 039497          388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP--DGKFLVFRSGRSGHKNLFVL  465 (642)
Q Consensus       388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~g~~~l~~~  465 (642)
                      +..+.       ++.+++|++..        +.     ....+..+. ..+..+.|+|  +|+.|+..+.   +..|.+|
T Consensus       170 ~t~s~-------D~~v~lwd~~~--------~~-----~~~~~~~h~-~~v~~~~~~~~~~g~~l~sgs~---Dg~v~~w  225 (354)
T 2pbi_B          170 LTASG-------DGTCALWDVES--------GQ-----LLQSFHGHG-ADVLCLDLAPSETGNTFVSGGC---DKKAMVW  225 (354)
T ss_dssp             EEEET-------TSEEEEEETTT--------CC-----EEEEEECCS-SCEEEEEECCCSSCCEEEEEET---TSCEEEE
T ss_pred             EEEeC-------CCcEEEEeCCC--------Ce-----EEEEEcCCC-CCeEEEEEEeCCCCCEEEEEeC---CCeEEEE
Confidence            88774       78999999855        22     445555554 5666677776  5778877663   3479999


Q ss_pred             ECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccc
Q 039497          466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERI  544 (642)
Q Consensus       466 d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~  544 (642)
                      |+.+++.   +..+..+...+..++|+|+|+.|+..+.++.        |.+||+..++...+.... ...       .+
T Consensus       226 d~~~~~~---~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~--------v~lwd~~~~~~~~~~~~~~~~~-------~~  287 (354)
T 2pbi_B          226 DMRSGQC---VQAFETHESDVNSVRYYPSGDAFASGSDDAT--------CRLYDLRADREVAIYSKESIIF-------GA  287 (354)
T ss_dssp             ETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSC--------EEEEETTTTEEEEEECCTTCCS-------CE
T ss_pred             ECCCCcE---EEEecCCCCCeEEEEEeCCCCEEEEEeCCCe--------EEEEECCCCcEEEEEcCCCccc-------ce
Confidence            9998886   5667767777888999999999998887765        999999876554433211 111       35


Q ss_pred             cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      ..+.|+|||+.|+..+.++                 .|.+||+..+. +..+..+...+..++|||||++|++....+
T Consensus       288 ~~~~~s~~g~~l~~g~~d~-----------------~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          288 SSVDFSLSGRLLFAGYNDY-----------------TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             EEEEECTTSSEEEEEETTS-----------------CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             eEEEEeCCCCEEEEEECCC-----------------cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence            6789999999888877654                 78888986554 566777777788999999999998865443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.79  E-value=1.1e-16  Score=162.24  Aligned_cols=278  Identities=12%  Similarity=0.015  Sum_probs=193.8

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL  315 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~  315 (642)
                      ..+..+...+..++|+|||++|+....++     .+.+||+...              +.+....               
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg-----~v~iWd~~~~--------------~~~~~~~---------------   94 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSRLLLSASQDG-----KLIIWDSYTT--------------NKVHAIP---------------   94 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTT-----EEEEEETTTC--------------CEEEEEE---------------
T ss_pred             eeecCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCC--------------CcceEee---------------
Confidence            44566666788889999999888865544     7888886221              1111110               


Q ss_pred             eeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe--eE---Eee-cCCceeeeeecCCCEEEE
Q 039497          316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR--WT---LIK-DRTAFYNSWSPTEKHVIY  389 (642)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~--~~---l~~-~~~~~~~~~spdg~~l~~  389 (642)
                          .....       .....|+|+|+.|+..+.   ...+.++++...+.  ..   +.. ...+..+.|+++++ |+.
T Consensus        95 ----~~~~~-------v~~~~~s~~~~~l~s~~~---d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s  159 (340)
T 1got_B           95 ----LRSSW-------VMTCAYAPSGNYVACGGL---DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVT  159 (340)
T ss_dssp             ----CSSSC-------EEEEEECTTSSEEEEEET---TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEE
T ss_pred             ----cCCcc-------EEEEEECCCCCEEEEEeC---CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEE
Confidence                00000       124589999998887654   35777888876532  11   111 45677889998876 555


Q ss_pred             EEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497          390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN  469 (642)
Q Consensus       390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~  469 (642)
                      .+       .++.+++|++..        +.     ....+..+. ..+..+.|+||++.|+..+.   +..|.+||+.+
T Consensus       160 ~s-------~d~~i~~wd~~~--------~~-----~~~~~~~h~-~~v~~~~~~~~~~~l~sg~~---d~~v~~wd~~~  215 (340)
T 1got_B          160 SS-------GDTTCALWDIET--------GQ-----QTTTFTGHT-GDVMSLSLAPDTRLFVSGAC---DASAKLWDVRE  215 (340)
T ss_dssp             EE-------TTSCEEEEETTT--------TE-----EEEEECCCS-SCEEEEEECTTSSEEEEEET---TSCEEEEETTT
T ss_pred             EE-------CCCcEEEEECCC--------Cc-----EEEEEcCCC-CceEEEEECCCCCEEEEEeC---CCcEEEEECCC
Confidence            54       378899999854        22     445555555 67888999999998887763   34799999998


Q ss_pred             CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee-cCCCCCCCcccccccceE
Q 039497          470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVC  548 (642)
Q Consensus       470 g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~  548 (642)
                      ++.   ...+..+...+..++|+|+|++|+..+.++.        |.+||+..++...... .....       .+..+.
T Consensus       216 ~~~---~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~--------v~iwd~~~~~~~~~~~~~~~~~-------~v~~~~  277 (340)
T 1got_B          216 GMC---RQTFTGHESDINAICFFPNGNAFATGSDDAT--------CRLFDLRADQELMTYSHDNIIC-------GITSVS  277 (340)
T ss_dssp             CSE---EEEECCCSSCEEEEEECTTSSEEEEEETTSC--------EEEEETTTTEEEEEECCTTCCS-------CEEEEE
T ss_pred             Cee---EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc--------EEEEECCCCcEEEEEccCCccc-------ceEEEE
Confidence            876   5667777777888999999999998887765        9999998765433222 11111       467889


Q ss_pred             EcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       549 ~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      |+|||+.|+..+.++                 .|.+||...+. ...+..+...+..++|+|||++|++....+
T Consensus       278 ~s~~g~~l~~g~~d~-----------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          278 FSKSGRLLLAGYDDF-----------------NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             ECTTSSEEEEEETTS-----------------EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             ECCCCCEEEEECCCC-----------------eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence            999999988877654                 78889986655 556667777788999999999998865443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.79  E-value=2.2e-17  Score=168.58  Aligned_cols=272  Identities=11%  Similarity=-0.028  Sum_probs=174.5

Q ss_pred             CCCCccccceeecCCcEEEEEEeccCCc-eeeEEEEEeec------------CCCCcccCCeecCCCCEEEEEEeecCCC
Q 039497          240 PPGVHCFTPAAFHDGKRLAVATRRKNRN-FRHIEIYDLTL------------NPNFHHYNPFVSANSEFIGYHRFRGEST  306 (642)
Q Consensus       240 ~~~~~~~~~~~SpdG~~l~~~~~~~~~~-~~~i~~~d~~~------------~~~~~~~~~~~spDg~~l~~~~~~~~~~  306 (642)
                      .+...+..++|||||++|+......... ...+++|+...            .+...+...+|+||++.++ ...++.  
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-~s~dg~--  116 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-ASDSGA--  116 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-EETTSC--
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-EECCCE--
Confidence            3455678899999999999876543211 34688887622            2334466789999987554 333222  


Q ss_pred             CCCcccceEeeccCCCceeEEe--ee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeee
Q 039497          307 EGQSTIPHLEPVASPVKELRML--RL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSW  380 (642)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~  380 (642)
                          ..+|-.............  ..  ....+.|+|||++|+....   ...|.++|+.+++......  ...+..+.|
T Consensus       117 ----v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~---dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~  189 (357)
T 4g56_B          117 ----VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK---DFSVKVWDLSQKAVLKSYNAHSSEVNCVAA  189 (357)
T ss_dssp             ----EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             ----EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC---CCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence                333422211111111111  11  1245689999999887654   3578888998877554443  566888999


Q ss_pred             ecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc--cccCCCCccCcEECCCCCeEEEEeCCCC
Q 039497          381 SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL--TKEETGNNAFPSCSPDGKFLVFRSGRSG  458 (642)
Q Consensus       381 spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDg~~l~~~~~~~g  458 (642)
                      +|+++.++++..      .++.+++|++..        +.     ....+  .... ..+..++|+|++..++.....+ 
T Consensus       190 s~~~~~~~~s~~------~dg~v~~wd~~~--------~~-----~~~~~~~~~~~-~~v~~v~~sp~~~~~la~g~~d-  248 (357)
T 4g56_B          190 CPGKDTIFLSCG------EDGRILLWDTRK--------PK-----PATRIDFCASD-TIPTSVTWHPEKDDTFACGDET-  248 (357)
T ss_dssp             CTTCSSCEEEEE------TTSCEEECCTTS--------SS-----CBCBCCCTTCC-SCEEEEEECTTSTTEEEEEESS-
T ss_pred             ccCCCceeeeec------cCCceEEEECCC--------Cc-----eeeeeeecccc-ccccchhhhhcccceEEEeecc-
Confidence            999875544442      378899998754        12     22222  2222 4567789999976555444333 


Q ss_pred             ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC-EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCC
Q 039497          459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD-LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG  537 (642)
Q Consensus       459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~  537 (642)
                       ..|.+||+.+++.   +..+..+...+..++|+|+|+ +|+..+.++.        |++||+++++.....  ++..  
T Consensus       249 -~~i~~wd~~~~~~---~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~--------i~iwd~~~~~~~~~~--~H~~--  312 (357)
T 4g56_B          249 -GNVSLVNIKNPDS---AQTSAVHSQNITGLAYSYHSSPFLASISEDCT--------VAVLDADFSEVFRDL--SHRD--  312 (357)
T ss_dssp             -SCEEEEESSCGGG---CEEECCCSSCEEEEEECSSSSCCEEEEETTSC--------EEEECTTSCEEEEEC--CCSS--
T ss_pred             -cceeEEECCCCcE---eEEEeccceeEEEEEEcCCCCCEEEEEeCCCE--------EEEEECCCCcEeEEC--CCCC--
Confidence             3799999998886   667776777788899999985 4555665554        999999887665433  4555  


Q ss_pred             CcccccccceEEcC-CCCEEEEEEecC
Q 039497          538 DVDRERINHVCFSA-DGEWLLFTANLG  563 (642)
Q Consensus       538 ~~~~~~~~~~~~S~-Dg~~l~~~~~~~  563 (642)
                           .+..++||| |++.|+..+.++
T Consensus       313 -----~V~~vafsP~d~~~l~s~s~Dg  334 (357)
T 4g56_B          313 -----FVTGVAWSPLDHSKFTTVGWDH  334 (357)
T ss_dssp             -----CEEEEEECSSSTTEEEEEETTS
T ss_pred             -----CEEEEEEeCCCCCEEEEEcCCC
Confidence                 678999998 888888777654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.78  E-value=2.3e-16  Score=160.78  Aligned_cols=285  Identities=14%  Similarity=0.098  Sum_probs=193.3

Q ss_pred             eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEE
Q 039497          132 FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHR  208 (642)
Q Consensus       132 ~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~  208 (642)
                      .+.|..+.......+|||||++||..+.+.            .|.+|+..+++.........   ...+|+|+|..+++.
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg------------~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg  124 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDG------------KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACG  124 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTS------------EEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEE
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCC------------eEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEe
Confidence            455666666677899999999999988776            78999988877655444332   245999999988887


Q ss_pred             ecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCe
Q 039497          209 QADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPF  288 (642)
Q Consensus       209 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  288 (642)
                       ..++...+|.+.......   .......+..+...+...+|+|+++.|+....++     .+.+||+...         
T Consensus       125 -~~d~~i~v~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~-----~v~lwd~~~~---------  186 (354)
T 2pbi_B          125 -GLDNKCSVYPLTFDKNEN---MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG-----TCALWDVESG---------  186 (354)
T ss_dssp             -STTSEEEEEECCCCTTCC---SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTC---------
T ss_pred             -eCCCCEEEEEEecccccc---ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCC---------
Confidence             677877777665432100   0002234444555677788999999988865544     8999987321         


Q ss_pred             ecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC--CCCEEEEEecCCCceeEEEEECCCCCe
Q 039497          289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP--DGGLIVFNHDFELNAGIKIAKSDGSKR  366 (642)
Q Consensus       289 ~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~l~~~d~~~~~~  366 (642)
                           +.+...                   .+....+       ....|+|  +|+.|+..+.   ...|.++|+.+++.
T Consensus       187 -----~~~~~~-------------------~~h~~~v-------~~~~~~~~~~g~~l~sgs~---Dg~v~~wd~~~~~~  232 (354)
T 2pbi_B          187 -----QLLQSF-------------------HGHGADV-------LCLDLAPSETGNTFVSGGC---DKKAMVWDMRSGQC  232 (354)
T ss_dssp             -----CEEEEE-------------------ECCSSCE-------EEEEECCCSSCCEEEEEET---TSCEEEEETTTCCE
T ss_pred             -----eEEEEE-------------------cCCCCCe-------EEEEEEeCCCCCEEEEEeC---CCeEEEEECCCCcE
Confidence                 111110                   0000011       1234555  5777777654   36788889988776


Q ss_pred             eEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEE
Q 039497          367 WTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSC  443 (642)
Q Consensus       367 ~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~  443 (642)
                      .....  ...+..+.|+|+++.|+..+.       ++.+++|++..        ..     ....+.... ......+.|
T Consensus       233 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~-------D~~v~lwd~~~--------~~-----~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          233 VQAFETHESDVNSVRYYPSGDAFASGSD-------DATCRLYDLRA--------DR-----EVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTT--------TE-----EEEEECCTTCCSCEEEEEE
T ss_pred             EEEecCCCCCeEEEEEeCCCCEEEEEeC-------CCeEEEEECCC--------Cc-----EEEEEcCCCcccceeEEEE
Confidence            55443  566889999999999888774       78999999854        11     222222211 123556899


Q ss_pred             CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCC
Q 039497          444 SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN  506 (642)
Q Consensus       444 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~  506 (642)
                      +|||++|+..+.   +..|.+||+.+++.   +..+..+...+..++|+|||++|+..+.++.
T Consensus       293 s~~g~~l~~g~~---d~~i~vwd~~~~~~---~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          293 SLSGRLLFAGYN---DYTINVWDVLKGSR---VSILFGHENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             CTTSSEEEEEET---TSCEEEEETTTCSE---EEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             eCCCCEEEEEEC---CCcEEEEECCCCce---EEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence            999999887764   34799999988876   6677777778889999999999998887653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.78  E-value=1.6e-16  Score=161.03  Aligned_cols=287  Identities=13%  Similarity=0.067  Sum_probs=193.1

Q ss_pred             eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEE
Q 039497          132 FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHR  208 (642)
Q Consensus       132 ~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~  208 (642)
                      ...|..+.......+|||||++||..+.+.            .|.+|++.+++.......+..   ..+|+|+|.++++.
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg------------~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  115 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDG------------KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG  115 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTT------------EEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCC------------cEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEE
Confidence            344555666667789999999999988766            799999988876554443332   35899999888887


Q ss_pred             ecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCe
Q 039497          209 QADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPF  288 (642)
Q Consensus       209 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  288 (642)
                       ..++...||.+....+..     .....+..+...+....|+++++ |+....+     ..+.+||+...         
T Consensus       116 -~~d~~v~iw~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~---------  174 (340)
T 1got_B          116 -GLDNICSIYNLKTREGNV-----RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD-----TTCALWDIETG---------  174 (340)
T ss_dssp             -ETTCEEEEEETTTCSBSC-----EEEEEEECCSSCEEEEEEEETTE-EEEEETT-----SCEEEEETTTT---------
T ss_pred             -eCCCeEEEEECccCCCcc-----eeEEEecCCCccEEEEEECCCCc-EEEEECC-----CcEEEEECCCC---------
Confidence             567766666543322100     01233445555666778888886 5554433     37888887321         


Q ss_pred             ecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE
Q 039497          289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT  368 (642)
Q Consensus       289 ~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~  368 (642)
                           +.+..                   +.+....       .....|+|+++.++..+.   ...|.++|+..+....
T Consensus       175 -----~~~~~-------------------~~~h~~~-------v~~~~~~~~~~~l~sg~~---d~~v~~wd~~~~~~~~  220 (340)
T 1got_B          175 -----QQTTT-------------------FTGHTGD-------VMSLSLAPDTRLFVSGAC---DASAKLWDVREGMCRQ  220 (340)
T ss_dssp             -----EEEEE-------------------ECCCSSC-------EEEEEECTTSSEEEEEET---TSCEEEEETTTCSEEE
T ss_pred             -----cEEEE-------------------EcCCCCc-------eEEEEECCCCCEEEEEeC---CCcEEEEECCCCeeEE
Confidence                 11100                   0000001       124589999998777654   3678888998876554


Q ss_pred             Eee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEECC
Q 039497          369 LIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSP  445 (642)
Q Consensus       369 l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Sp  445 (642)
                      ...  ...+..+.|+|+++.|+..+.       ++.+++|++..        +.     ....+.... ...+..+.|+|
T Consensus       221 ~~~~h~~~v~~v~~~p~~~~l~s~s~-------d~~v~iwd~~~--------~~-----~~~~~~~~~~~~~v~~~~~s~  280 (340)
T 1got_B          221 TFTGHESDINAICFFPNGNAFATGSD-------DATCRLFDLRA--------DQ-----ELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTT--------TE-----EEEEECCTTCCSCEEEEEECT
T ss_pred             EEcCCcCCEEEEEEcCCCCEEEEEcC-------CCcEEEEECCC--------Cc-----EEEEEccCCcccceEEEEECC
Confidence            433  556889999999999988774       78899999854        11     222222111 12466789999


Q ss_pred             CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEe
Q 039497          446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK  519 (642)
Q Consensus       446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d  519 (642)
                      ||++|+..+.   +..|.+||+.+++.   +..+..+...+..++|+|||++|+..+.++.        |.+||
T Consensus       281 ~g~~l~~g~~---d~~i~vwd~~~~~~---~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~--------i~iWd  340 (340)
T 1got_B          281 SGRLLLAGYD---DFNCNVWDALKADR---AGVLAGHDNRVSCLGVTDDGMAVATGSWDSF--------LKIWN  340 (340)
T ss_dssp             TSSEEEEEET---TSEEEEEETTTCCE---EEEEECCSSCEEEEEECTTSSCEEEEETTSC--------EEEEC
T ss_pred             CCCEEEEECC---CCeEEEEEcccCcE---eeEeecCCCcEEEEEEcCCCCEEEEEcCCcc--------EEecC
Confidence            9999987774   34899999988876   5677777778888999999999998887764        77775

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.78  E-value=5.8e-17  Score=169.32  Aligned_cols=308  Identities=13%  Similarity=0.046  Sum_probs=194.9

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY  274 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~  274 (642)
                      .++|+|||+.+++. ..++  .++.++..++.       ....+..+ .......++|||++|+.....+     .+.+|
T Consensus        61 ~~~~s~~g~~l~~~-~~d~--~v~i~d~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg-----~i~iw  124 (420)
T 3vl1_A           61 GNTFEKVGSHLYKA-RLDG--HDFLFNTIIRD-------GSKMLKRA-DYTAVDTAKLQMRRFILGTTEG-----DIKVL  124 (420)
T ss_dssp             TCEEEEEETTEEEE-EETT--EEEEEECCSEE-------TTTTSCSC-CEEEEEEECSSSCEEEEEETTS-----CEEEE
T ss_pred             ceeeeecCCeEEEE-EcCC--cEEEEEecccc-------eeeEEecC-CceEEEEEecCCCEEEEEECCC-----CEEEE
Confidence            57999999777766 3466  55556665542       11122222 2223345789999988865443     78888


Q ss_pred             EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce
Q 039497          275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA  354 (642)
Q Consensus       275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  354 (642)
                      |+...              + +                  ...+......       ...+.|+|+|+.|+..+.   ..
T Consensus       125 d~~~~--------------~-~------------------~~~~~~h~~~-------v~~~~~~~~~~~l~s~s~---d~  161 (420)
T 3vl1_A          125 DSNFN--------------L-Q------------------REIDQAHVSE-------ITKLKFFPSGEALISSSQ---DM  161 (420)
T ss_dssp             CTTSC--------------E-E------------------EEETTSSSSC-------EEEEEECTTSSEEEEEET---TS
T ss_pred             eCCCc--------------c-e------------------eeecccccCc-------cEEEEECCCCCEEEEEeC---CC
Confidence            76211              0 0                  0000111111       124589999998887654   36


Q ss_pred             eEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497          355 GIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK  432 (642)
Q Consensus       355 ~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (642)
                      .|.++|+..++......  ...+..+.|+|+++.|+..+.       ++.+++|++..        +.     ....+..
T Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-------d~~v~iwd~~~--------~~-----~~~~~~~  221 (420)
T 3vl1_A          162 QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL-------DGTIRLWECGT--------GT-----TIHTFNR  221 (420)
T ss_dssp             EEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET-------TSCEEEEETTT--------TE-----EEEEECB
T ss_pred             eEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC-------CCcEEEeECCC--------Cc-----eeEEeec
Confidence            78899998776544333  567889999999999988774       67899998754        11     2222221


Q ss_pred             c-----------------------CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccc
Q 039497          433 E-----------------------ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTM  488 (642)
Q Consensus       433 ~-----------------------~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~  488 (642)
                      .                       ....+..+.|+|||++|+..+..   ..|.+||+.+++.   +..+.. +...+..
T Consensus       222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~---~~~~~~~~~~~v~~  295 (420)
T 3vl1_A          222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS---GVITVHNVFSKEQ---TIQLPSKFTCSCNS  295 (420)
T ss_dssp             TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT---SCEEEEETTTCCE---EEEECCTTSSCEEE
T ss_pred             CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC---CeEEEEECCCCce---eEEcccccCCCcee
Confidence            0                       01345668899999999877643   3799999998875   444443 4456788


Q ss_pred             eeEecCCC-EEEEEecCCCCCCCCceeEEEEeCCCCce--EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          489 PSWSPKGD-LIAFSSNRHNPDNVEAFSLYVIKPDGSGL--RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       489 ~~~spdG~-~l~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                      ++|+|+|+ +|+..+.++.        |++||+.+++.  ..+.. ....       .+..+ ++++++.|+..+.++  
T Consensus       296 ~~~~~~~~~~l~~g~~dg~--------i~vwd~~~~~~~~~~~~~-~~~~-------~v~~~-~~~~~~~l~s~~~d~--  356 (420)
T 3vl1_A          296 LTVDGNNANYIYAGYENGM--------LAQWDLRSPECPVGEFLI-NEGT-------PINNV-YFAAGALFVSSGFDT--  356 (420)
T ss_dssp             EEECSSCTTEEEEEETTSE--------EEEEETTCTTSCSEEEEE-STTS-------CEEEE-EEETTEEEEEETTTE--
T ss_pred             EEEeCCCCCEEEEEeCCCe--------EEEEEcCCCcCchhhhhc-cCCC-------CceEE-EeCCCCEEEEecCCc--
Confidence            99999999 7777776553        99999987643  33332 2222       34445 556888776665443  


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEcCC----------CceeeccCCCCCCCCcEEecCCc---eEEeecCCC
Q 039497          566 MAEPVSWPNQFQPYGDLYVVKLDG----------SGLRRLTWNGYENGTPAWHPGNQ---LDLGKLRLE  621 (642)
Q Consensus       566 ~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~lt~~~~~~~~~~~s~dg~---~~~~~~~~~  621 (642)
                                     .|.+|++..          .....+..+...+..++|+||++   .+++..+.|
T Consensus       357 ---------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g  410 (420)
T 3vl1_A          357 ---------------SIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN  410 (420)
T ss_dssp             ---------------EEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred             ---------------cEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence                           677777654          22334445566778999999998   565554443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.78  E-value=8.2e-17  Score=167.67  Aligned_cols=282  Identities=13%  Similarity=0.091  Sum_probs=199.3

Q ss_pred             ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEec
Q 039497          134 RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQA  210 (642)
Q Consensus       134 ~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~  210 (642)
                      .+..+.......+|+|||++||..+.+.            .|.+|++.+++..+....+..   .++|+|++.++++. .
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg------------~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sg-s  169 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDA------------TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-S  169 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSS------------CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEE-E
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCC------------eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEE-e
Confidence            3445555567789999999999988766            799999999886665543332   45999999988887 5


Q ss_pred             CCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeec
Q 039497          211 DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS  290 (642)
Q Consensus       211 ~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s  290 (642)
                      .++...||.  ..++.       ....+..+...+..++|+|+|++|+....++     .+.+||+...           
T Consensus       170 ~D~~i~iwd--~~~~~-------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~-----~i~~wd~~~~-----------  224 (410)
T 1vyh_C          170 ADMTIKLWD--FQGFE-------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDK-----TIKMWEVQTG-----------  224 (410)
T ss_dssp             TTSCCCEEE--TTSSC-------EEECCCCCSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTC-----------
T ss_pred             CCCeEEEEe--CCCCc-------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCC-----------
Confidence            678666664  45542       3445556666788899999999998865544     8999998321           


Q ss_pred             CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe
Q 039497          291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI  370 (642)
Q Consensus       291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~  370 (642)
                         +.+...                   .+....+       ....++|+|+.|+..+.   ...|.++++.+++.....
T Consensus       225 ---~~~~~~-------------------~~h~~~v-------~~~~~~~~g~~l~s~s~---D~~v~vwd~~~~~~~~~~  272 (410)
T 1vyh_C          225 ---YCVKTF-------------------TGHREWV-------RMVRPNQDGTLIASCSN---DQTVRVWVVATKECKAEL  272 (410)
T ss_dssp             ---CEEEEE-------------------ECCSSCE-------EEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEEE
T ss_pred             ---cEEEEE-------------------eCCCccE-------EEEEECCCCCEEEEEcC---CCeEEEEECCCCceeeEe
Confidence               111110                   0000011       13478999998877654   357888888877655443


Q ss_pred             e--cCCceeeeeecC--------------------CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497          371 K--DRTAFYNSWSPT--------------------EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK  428 (642)
Q Consensus       371 ~--~~~~~~~~~spd--------------------g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  428 (642)
                      .  ...+..+.|+|+                    |..|+..+.       ++.+++|++..        +.     ...
T Consensus       273 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~-------D~~i~iwd~~~--------~~-----~~~  332 (410)
T 1vyh_C          273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-------DKTIKMWDVST--------GM-----CLM  332 (410)
T ss_dssp             CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET-------TSEEEEEETTT--------TE-----EEE
T ss_pred             cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC-------CCeEEEEECCC--------Cc-----eEE
Confidence            3  556788899997                    556766653       78899999854        22     445


Q ss_pred             EccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497          429 ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       429 ~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~  508 (642)
                      .+..+. ..+..+.|+|+|++|+..+.   +..|.+||+.+++.   +..+..+...+..++|+|++++|+..+.++.  
T Consensus       333 ~~~~h~-~~v~~v~~~~~g~~l~s~s~---D~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~--  403 (410)
T 1vyh_C          333 TLVGHD-NWVRGVLFHSGGKFILSCAD---DKTLRVWDYKNKRC---MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT--  403 (410)
T ss_dssp             EEECCS-SCEEEEEECSSSSCEEEEET---TTEEEEECCTTSCC---CEEEECCSSCEEEEEECSSSSCEEEEETTSE--
T ss_pred             EEECCC-CcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCce---EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc--
Confidence            555555 67788999999999987763   34899999988876   6777777777889999999999988887754  


Q ss_pred             CCCceeEEEEeC
Q 039497          509 NVEAFSLYVIKP  520 (642)
Q Consensus       509 ~~~~~~l~~~d~  520 (642)
                            |.+|++
T Consensus       404 ------i~vW~~  409 (410)
T 1vyh_C          404 ------VKVWEC  409 (410)
T ss_dssp             ------EEEEC-
T ss_pred             ------EEEEeC
Confidence                  788775

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.78  E-value=5.2e-17  Score=181.14  Aligned_cols=308  Identities=13%  Similarity=0.070  Sum_probs=190.4

Q ss_pred             ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCC-------ccCCceeCCCCcEEEEEecCCCCCCCC
Q 039497           95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGV-------VDYSPSVSYSGKFIAVASYESRPWPGE  167 (642)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~-------~~~~~~~SPDG~~la~~~~~~~~~~~~  167 (642)
                      .|..+|++++|........     ...||+++..+++.++|+....       ....++|||||++|||..+..      
T Consensus        74 ~p~~dG~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~------  142 (695)
T 2bkl_A           74 TPSRRNGRFFYVRTHKDKE-----KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN------  142 (695)
T ss_dssp             CCEEETTEEEEEEECTTCS-----SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET------
T ss_pred             CCEEECCEEEEEEEcCCCe-----EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC------
Confidence            3455899999988754321     1369999988888888875332       246789999999999997654      


Q ss_pred             CCCCeeeEEEEEecCCCce---eEeecCCCcceEeeCCe-EEEEEecCCC---------ceEEEEEecCCCcccccCCcc
Q 039497          168 FHELNTDIVVFQESDPNKR---VIVCERGGWPTWSGDST-IYFHRQADDG---------WWSIFRVSFPENLEFLGFPIA  234 (642)
Q Consensus       168 ~~~~~~~l~~~~~~~g~~~---~l~~~~~~~~~wspdg~-~~~~~~~~~g---------~~~l~~~~~~~~~~~~~~~~~  234 (642)
                       ......|+++++++|+..   .+.......++|+|||+ ++|++.+..+         ..+||++++.++.        
T Consensus       143 -G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~--------  213 (695)
T 2bkl_A          143 -AADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP--------  213 (695)
T ss_dssp             -TCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG--------
T ss_pred             -CCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc--------
Confidence             012368999999999865   22211115689999996 4455422111         1123333332220        


Q ss_pred             ceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccce
Q 039497          235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH  314 (642)
Q Consensus       235 ~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~  314 (642)
                      .+                                                         ..+++......          
T Consensus       214 ~~---------------------------------------------------------~~lv~~~~~~~----------  226 (695)
T 2bkl_A          214 SK---------------------------------------------------------DTVVHERTGDP----------  226 (695)
T ss_dssp             GG---------------------------------------------------------CEEEECCCCCT----------
T ss_pred             hh---------------------------------------------------------ceEEEecCCCC----------
Confidence            00                                                         00111000000          


Q ss_pred             EeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC-CceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEc
Q 039497          315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE-LNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTST  392 (642)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~  392 (642)
                                     .....+.|||||++|++..... ....||+++..+++.+.+.. ......+.| ++|+ |++.+.
T Consensus       227 ---------------~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~  289 (695)
T 2bkl_A          227 ---------------TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTD  289 (695)
T ss_dssp             ---------------TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEEC
T ss_pred             ---------------EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEEC
Confidence                           0001347888888888866543 56788988877777777766 334555666 7888 877764


Q ss_pred             CCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497          393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE  471 (642)
Q Consensus       393 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~  471 (642)
                      .     +.....|+.++.  +     ++..  ...+.+..+. ...+..+.|+  +.+|++...+++..+|++++++++.
T Consensus       290 ~-----~~~~~~l~~~d~--~-----~~~~--~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~  353 (695)
T 2bkl_A          290 E-----GAPRQRVFEVDP--A-----KPAR--ASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKP  353 (695)
T ss_dssp             T-----TCTTCEEEEEBT--T-----BCSG--GGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCE
T ss_pred             C-----CCCCCEEEEEeC--C-----CCCc--cCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCe
Confidence            2     223455555554  2     1210  0134554432 1345556777  4577777777788899999987443


Q ss_pred             cccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          472 FNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       472 ~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                          .+.+... ...+..+.++|||+.|+|......    ....||++|+++++.+.+..
T Consensus       354 ----~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~----~P~~v~~~d~~~g~~~~l~~  405 (695)
T 2bkl_A          354 ----VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFT----TPRQIYKTSVSTGKSELWAK  405 (695)
T ss_dssp             ----EEECCCSSSSEECCCBSCTTCSEEEEEEEETT----EEEEEEEEETTTCCEEEEEE
T ss_pred             ----eEEecCCCCeEEEEeecCCCCCEEEEEEcCCC----CCCEEEEEECCCCcEEEEec
Confidence                4666543 455667889999999988876543    56789999999988777764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.78  E-value=1.3e-16  Score=163.23  Aligned_cols=193  Identities=16%  Similarity=0.142  Sum_probs=137.4

Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR  453 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~  453 (642)
                      .+..++|||||+.|++++.     ..+..++||++..         +.    ....+ .+. ..+..++|||||++|+..
T Consensus       135 ~~~~v~fSpDg~~la~as~-----~~d~~i~iwd~~~---------~~----~~~~~-~~~-~~V~~v~fspdg~~l~s~  194 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASS-----KVPAIMRIIDPSD---------LT----EKFEI-ETR-GEVKDLHFSTDGKVVAYI  194 (365)
T ss_dssp             CEEEEEECTTSSCEEEEES-----CSSCEEEEEETTT---------TE----EEEEE-ECS-SCCCEEEECTTSSEEEEE
T ss_pred             CEEEEEEcCCCCEEEEEEC-----CCCCEEEEeECCC---------Cc----EEEEe-CCC-CceEEEEEccCCceEEec
Confidence            3567899999999988774     2367899999754         21    23333 333 568889999999999887


Q ss_pred             eCCCCceeEEEEECCCCccccceeeC--CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee--
Q 039497          454 SGRSGHKNLFVLDAVNGEFNGDIRQL--TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH--  529 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~~g~~~~~~~~l--~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--  529 (642)
                      +..    .+.+|+..+++.   +...  ..+...+..++|+|||++++..+.++.    ....++.|++.......+.  
T Consensus       195 s~~----~~~~~~~~~~~~---~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~----~~~~i~~~~~~~~~~~~~~~~  263 (365)
T 4h5i_A          195 TGS----SLEVISTVTGSC---IARKTDFDKNWSLSKINFIADDTVLIAASLKKG----KGIVLTKISIKSGNTSVLRSK  263 (365)
T ss_dssp             CSS----CEEEEETTTCCE---EEEECCCCTTEEEEEEEEEETTEEEEEEEESSS----CCEEEEEEEEETTEEEEEEEE
T ss_pred             cce----eEEEEEeccCcc---eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc----ceeEEeecccccceecceeee
Confidence            632    577788877764   2222  234445678899999999988877653    3456788888765543221  


Q ss_pred             -ecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-ee-ccCCCCCCCCcE
Q 039497          530 -VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RR-LTWNGYENGTPA  606 (642)
Q Consensus       530 -~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-lt~~~~~~~~~~  606 (642)
                       ..+...       .+..++|||||++|+..+.++                 .|.+||+.++++ .. +..+...+.+++
T Consensus       264 ~~~~~~~-------~V~~~~~Spdg~~lasgs~D~-----------------~V~iwd~~~~~~~~~~~~gH~~~V~~v~  319 (365)
T 4h5i_A          264 QVTNRFK-------GITSMDVDMKGELAVLASNDN-----------------SIALVKLKDLSMSKIFKQAHSFAITEVT  319 (365)
T ss_dssp             EEESSCS-------CEEEEEECTTSCEEEEEETTS-----------------CEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred             eecCCCC-------CeEeEEECCCCCceEEEcCCC-----------------EEEEEECCCCcEEEEecCcccCCEEEEE
Confidence             123333       577899999999998888764                 688889988764 33 456777889999


Q ss_pred             EecCCceEEeecCCC
Q 039497          607 WHPGNQLDLGKLRLE  621 (642)
Q Consensus       607 ~s~dg~~~~~~~~~~  621 (642)
                      |||||++|++....+
T Consensus       320 fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          320 ISPDSTYVASVSAAN  334 (365)
T ss_dssp             ECTTSCEEEEEETTS
T ss_pred             ECCCCCEEEEEeCCC
Confidence            999999998865433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.78  E-value=1.1e-16  Score=166.83  Aligned_cols=278  Identities=15%  Similarity=0.125  Sum_probs=198.6

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL  315 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~  315 (642)
                      ..+..+...+..++|+|+++.|+....++     .|.+||+.....                              .   
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg-----~i~vwd~~~~~~------------------------------~---  143 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDF------------------------------E---  143 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCC------------------------------C---
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcE------------------------------E---
Confidence            34555666788889999999888865544     789998732210                              0   


Q ss_pred             eeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcC
Q 039497          316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTG  393 (642)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~  393 (642)
                      ..+.+....       .....|+|+|+.|+..+.   ...|.++|+.+.+......  ...+..+.|+|+++.|+..+. 
T Consensus       144 ~~l~~h~~~-------V~~v~~~~~~~~l~sgs~---D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~-  212 (410)
T 1vyh_C          144 RTLKGHTDS-------VQDISFDHSGKLLASCSA---DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR-  212 (410)
T ss_dssp             EEECCCSSC-------EEEEEECTTSSEEEEEET---TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET-
T ss_pred             EEEeccCCc-------EEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeC-
Confidence            000000011       124589999998877654   3567777888776443332  556889999999999988774 


Q ss_pred             CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc
Q 039497          394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN  473 (642)
Q Consensus       394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~  473 (642)
                            ++.+++|++..        +.     ....+..+. ..+..+.|+|||+.|+..+.+   ..|.+||+.+++. 
T Consensus       213 ------D~~i~~wd~~~--------~~-----~~~~~~~h~-~~v~~~~~~~~g~~l~s~s~D---~~v~vwd~~~~~~-  268 (410)
T 1vyh_C          213 ------DKTIKMWEVQT--------GY-----CVKTFTGHR-EWVRMVRPNQDGTLIASCSND---QTVRVWVVATKEC-  268 (410)
T ss_dssp             ------TSEEEEEETTT--------CC-----EEEEEECCS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTCCE-
T ss_pred             ------CCeEEEEECCC--------Cc-----EEEEEeCCC-ccEEEEEECCCCCEEEEEcCC---CeEEEEECCCCce-
Confidence                  78999999865        22     455666555 677888999999998877743   4799999998875 


Q ss_pred             cceeeCCCCCCcccceeEecC--------------------CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497          474 GDIRQLTDGPWIDTMPSWSPK--------------------GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP  533 (642)
Q Consensus       474 ~~~~~l~~~~~~~~~~~~spd--------------------G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  533 (642)
                        ...+..+...+..+.|+|+                    |.+|+..+.++.        |.+||+.++....... ++
T Consensus       269 --~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~--------i~iwd~~~~~~~~~~~-~h  337 (410)
T 1vyh_C          269 --KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT--------IKMWDVSTGMCLMTLV-GH  337 (410)
T ss_dssp             --EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE--------EEEEETTTTEEEEEEE-CC
T ss_pred             --eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe--------EEEEECCCCceEEEEE-CC
Confidence              5666667677788899997                    667777776654        9999998876543332 44


Q ss_pred             CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCc
Q 039497          534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQ  612 (642)
Q Consensus       534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~  612 (642)
                      ..       .+..+.|+|+|++|+..+.++                 .|.+||+..++ +..+..+...+..++|+|++.
T Consensus       338 ~~-------~v~~v~~~~~g~~l~s~s~D~-----------------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~  393 (410)
T 1vyh_C          338 DN-------WVRGVLFHSGGKFILSCADDK-----------------TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP  393 (410)
T ss_dssp             SS-------CEEEEEECSSSSCEEEEETTT-----------------EEEEECCTTSCCCEEEECCSSCEEEEEECSSSS
T ss_pred             CC-------cEEEEEEcCCCCEEEEEeCCC-----------------eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCC
Confidence            44       577899999999998777654                 78888887655 566777777788999999999


Q ss_pred             eEEeecCCC
Q 039497          613 LDLGKLRLE  621 (642)
Q Consensus       613 ~~~~~~~~~  621 (642)
                      ++++....+
T Consensus       394 ~l~sgs~D~  402 (410)
T 1vyh_C          394 YVVTGSVDQ  402 (410)
T ss_dssp             CEEEEETTS
T ss_pred             EEEEEeCCC
Confidence            998765443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.78  E-value=4e-16  Score=159.37  Aligned_cols=304  Identities=11%  Similarity=0.006  Sum_probs=200.6

Q ss_pred             cceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccc
Q 039497          234 APTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIP  313 (642)
Q Consensus       234 ~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~  313 (642)
                      +...+..+...+..++|+|||++|+.....+     .+.+||+..              ++.+...              
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~--------------~~~~~~~--------------   70 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDS-----SASVWYSLN--------------GERLGTL--------------   70 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSS-----CEEEEETTT--------------CCEEEEE--------------
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCC--------------chhhhhh--------------
Confidence            3445666666788899999999888865443     788888622              1111110              


Q ss_pred             eEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEc
Q 039497          314 HLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTST  392 (642)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~  392 (642)
                           .....       ....+.|+|++++|+....   ...|.++++.+++...... ...+..+.|+|+++.|+....
T Consensus        71 -----~~h~~-------~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  135 (369)
T 3zwl_B           71 -----DGHTG-------TIWSIDVDCFTKYCVTGSA---DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILD  135 (369)
T ss_dssp             -----CCCSS-------CEEEEEECTTSSEEEEEET---TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEEC
T ss_pred             -----hhcCC-------cEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecC
Confidence                 00000       1124589999998888654   3678999998887655544 667889999999999988874


Q ss_pred             CCCcccCCCeEEEEEEEeecCCCCCCCCCcc------ccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497          393 GPIFQSERATVQIARVSFQLDPSDDNNREEI------PCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL  465 (642)
Q Consensus       393 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~  465 (642)
                      .  .....+.+.+|++..  .      ....      ......+.... ...+..+.|+|||+.|+..+..   ..|++|
T Consensus       136 ~--~~~~~g~i~~~d~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~  202 (369)
T 3zwl_B          136 N--VMKNPGSINIYEIER--D------SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD---GKISKY  202 (369)
T ss_dssp             C--BTTBCCEEEEEEEEE--C------TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT---SEEEEE
T ss_pred             C--ccCCCCEEEEEEecC--C------ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC---CEEEEE
Confidence            1  001127899999987  2      1000      00112222222 0156778999999999887643   489999


Q ss_pred             ECCC-CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497          466 DAVN-GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI  544 (642)
Q Consensus       466 d~~~-g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~  544 (642)
                      |+.+ ++.   +..+..+...+..+.|+|+|++|+..+.++.        |++||+.+++.......  ..       .+
T Consensus       203 d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------i~v~d~~~~~~~~~~~~--~~-------~~  262 (369)
T 3zwl_B          203 DVSNNYEY---VDSIDLHEKSISDMQFSPDLTYFITSSRDTN--------SFLVDVSTLQVLKKYET--DC-------PL  262 (369)
T ss_dssp             ETTTTTEE---EEEEECCSSCEEEEEECTTSSEEEEEETTSE--------EEEEETTTCCEEEEEEC--SS-------CE
T ss_pred             ECCCCcEe---EEEEecCCCceeEEEECCCCCEEEEecCCce--------EEEEECCCCceeeeecC--CC-------Cc
Confidence            9987 454   5566666677888999999999988877653        99999988776555442  22       46


Q ss_pred             cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      ..+.|+|+++.|++...++.....   ..........|.+|+...++ +..+..+...+..++|+||+++|++....+
T Consensus       263 ~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  337 (369)
T 3zwl_B          263 NTAVITPLKEFIILGGGQEAKDVT---TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG  337 (369)
T ss_dssp             EEEEECSSSSEEEEEECCC----------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeEEecCCCceEEEeecCCCceEE---EEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence            789999999999988866531100   00000011268888887765 445556667778899999999998875544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=3e-16  Score=159.55  Aligned_cols=282  Identities=11%  Similarity=0.054  Sum_probs=177.6

Q ss_pred             cceEeeCCeEEEEEecCC----CceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee
Q 039497          195 WPTWSGDSTIYFHRQADD----GWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH  270 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~----g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~  270 (642)
                      .++|+|||+.+|+.....    ....|+.++..++        +.......+.....++++|||++++++....+    .
T Consensus        45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~----~  112 (353)
T 3vgz_A           45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--------EVTQAIHNDLKPFGATINNTTQTLWFGNTVNS----A  112 (353)
T ss_dssp             EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--------CEEEEEEESSCCCSEEEETTTTEEEEEETTTT----E
T ss_pred             ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--------eEEEEEecCCCcceEEECCCCCEEEEEecCCC----E
Confidence            368999997666653221    1348999999887        33333222334667899999998888654332    7


Q ss_pred             EEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC
Q 039497          271 IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF  350 (642)
Q Consensus       271 i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  350 (642)
                      +++||+..              ++.+.........           ... ....     .....+.|+|||+++++... 
T Consensus       113 v~~~d~~~--------------~~~~~~~~~~~~~-----------~~~-~~~~-----~~~~~~~~s~dg~~l~~~~~-  160 (353)
T 3vgz_A          113 VTAIDAKT--------------GEVKGRLVLDDRK-----------RTE-EVRP-----LQPRELVADDATNTVYISGI-  160 (353)
T ss_dssp             EEEEETTT--------------CCEEEEEESCCCC-----------CCS-SCCC-----CEEEEEEEETTTTEEEEEEE-
T ss_pred             EEEEeCCC--------------CeeEEEEecCCCc-----------ccc-ccCC-----CCCceEEECCCCCEEEEEec-
Confidence            78887622              2221111110000           000 0000     00124589999998877653 


Q ss_pred             CCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497          351 ELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK  428 (642)
Q Consensus       351 ~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  428 (642)
                      .....|+++|+++++......  ......+.|+|||++|++...       ++.+.+|++..         +.    ...
T Consensus       161 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~---------~~----~~~  220 (353)
T 3vgz_A          161 GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-------DGELITIDTAD---------NK----ILS  220 (353)
T ss_dssp             SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-------TSEEEEEETTT---------TE----EEE
T ss_pred             CCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-------CCeEEEEECCC---------Ce----EEE
Confidence            234679999999887665544  344788999999999888753       45666655432         21    222


Q ss_pred             Ecccc---CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497          429 ILTKE---ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       429 ~l~~~---~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      .+...   .......++|+|||++|++....  ...|+++|+.+++.   +..+....  ...+.|+|||++|++.....
T Consensus       221 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~~~~---~~~~~~~~--~~~~~~s~dg~~l~v~~~~~  293 (353)
T 3vgz_A          221 RKKLLDDGKEHFFINISLDTARQRAFITDSK--AAEVLVVDTRNGNI---LAKVAAPE--SLAVLFNPARNEAYVTHRQA  293 (353)
T ss_dssp             EEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSEEEEEETTTCCE---EEEEECSS--CCCEEEETTTTEEEEEETTT
T ss_pred             EEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCEEEEEECCCCcE---EEEEEcCC--CceEEECCCCCEEEEEECCC
Confidence            33221   11234457999999999877643  35899999998885   44444322  25689999999988887543


Q ss_pred             CCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       506 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      .       .|++||+.+++........  .       .+..++|+|||++|+++...+
T Consensus       294 ~-------~v~~~d~~~~~~~~~~~~~--~-------~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          294 G-------KVSVIDAKSYKVVKTFDTP--T-------HPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             T-------EEEEEETTTTEEEEEEECC--S-------EEEEEEECTTSCEEEEEEECC
T ss_pred             C-------eEEEEECCCCeEEEEEecC--C-------CCCeEEEcCCCCEEEEEEccc
Confidence            2       4999999887765544322  2       457899999999988877653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.77  E-value=6.6e-16  Score=155.67  Aligned_cols=291  Identities=11%  Similarity=0.094  Sum_probs=175.1

Q ss_pred             ceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC--cceEeeCCeEEEEEecCCCceEEEEEec
Q 039497          145 PSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFRVSF  222 (642)
Q Consensus       145 ~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~~l~~~~~  222 (642)
                      +.|+++++++......           ...|.+|++++++..........  .++|+|||+.+|+....++  .|+.++.
T Consensus         3 ~~~~~~~~~~~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--~i~~~d~   69 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQH-----------LRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQ--TLVQIET   69 (331)
T ss_dssp             ----CCCCEEEEEEGG-----------GTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTC--EEEEEEC
T ss_pred             eeEcCCCCEEEEEecC-----------CCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCC--eEEEEEC
Confidence            5678888886655432           33799999999987665553222  5699999986665534344  8899998


Q ss_pred             CCCcccccCCcc-ceeeCCCCCcccc-ceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEE
Q 039497          223 PENLEFLGFPIA-PTRVTPPGVHCFT-PAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHR  300 (642)
Q Consensus       223 ~~~~~~~~~~~~-~~~l~~~~~~~~~-~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~  300 (642)
                      .++.       . ...+.... .... ++|+|||++|+. . ........+++||+...              +.+... 
T Consensus        70 ~~~~-------~~~~~~~~~~-~~~~~~~~s~dg~~l~~-~-~~~~~~~~i~v~d~~~~--------------~~~~~~-  124 (331)
T 3u4y_A           70 QLEP-------PKVVAIQEGQ-SSMADVDITPDDQFAVT-V-TGLNHPFNMQSYSFLKN--------------KFISTI-  124 (331)
T ss_dssp             SSSS-------CEEEEEEECS-SCCCCEEECTTSSEEEE-C-CCSSSSCEEEEEETTTT--------------EEEEEE-
T ss_pred             CCCc-------eeEEecccCC-CCccceEECCCCCEEEE-e-cCCCCcccEEEEECCCC--------------CeEEEE-
Confidence            8873       2 33333333 3445 899999998883 2 22112236778876211              111000 


Q ss_pred             eecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCee-----E-EeecCC
Q 039497          301 FRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-----T-LIKDRT  374 (642)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-----~-l~~~~~  374 (642)
                                      ...          .....+.|+|||++|++.....+. .|++++++.....     . +.....
T Consensus       125 ----------------~~~----------~~~~~~~~spdg~~l~~~~~~~~~-~i~~~~~~~~g~~~~~~~~~~~~~~~  177 (331)
T 3u4y_A          125 ----------------PIP----------YDAVGIAISPNGNGLILIDRSSAN-TVRRFKIDADGVLFDTGQEFISGGTR  177 (331)
T ss_dssp             ----------------ECC----------TTEEEEEECTTSSCEEEEEETTTT-EEEEEEECTTCCEEEEEEEEECSSSS
T ss_pred             ----------------ECC----------CCccceEECCCCCEEEEEecCCCc-eEEEEEECCCCcEeecCCccccCCCC
Confidence                            000          011256899999987776543232 2555555432211     1 111445


Q ss_pred             ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497          375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS  454 (642)
Q Consensus       375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~  454 (642)
                      ...+.|+|||++|++...      ....+.+|++..        +..  ......+...  .....++|+|||++|+++.
T Consensus       178 ~~~~~~spdg~~l~v~~~------~~~~v~v~d~~~--------~~~--~~~~~~~~~~--~~~~~~~~spdg~~l~v~~  239 (331)
T 3u4y_A          178 PFNITFTPDGNFAFVANL------IGNSIGILETQN--------PEN--ITLLNAVGTN--NLPGTIVVSRDGSTVYVLT  239 (331)
T ss_dssp             EEEEEECTTSSEEEEEET------TTTEEEEEECSS--------TTS--CEEEEEEECS--SCCCCEEECTTSSEEEEEC
T ss_pred             ccceEECCCCCEEEEEeC------CCCeEEEEECCC--------Ccc--cceeeeccCC--CCCceEEECCCCCEEEEEE
Confidence            778999999999988874      367788888754        220  0014444433  4567899999999988776


Q ss_pred             CCCCceeEEEEECCCCccccceeeCCC----CCCc---ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          455 GRSGHKNLFVLDAVNGEFNGDIRQLTD----GPWI---DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~----~~~~---~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                      .  +...|+++|+.+++. ..+..+..    ....   ...++|+|||++|++.+...+       .|.+||+++.....
T Consensus       240 ~--~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~-------~v~v~d~~~~~~~~  309 (331)
T 3u4y_A          240 E--STVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR-------ELKVFTISGKVVGY  309 (331)
T ss_dssp             S--SEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT-------EEEEEETTSCEEEE
T ss_pred             c--CCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCC-------cEEEEEecCCcccc
Confidence            4  445799999998873 00111111    1111   133699999999988887543       49999998766554


Q ss_pred             e
Q 039497          528 I  528 (642)
Q Consensus       528 l  528 (642)
                      +
T Consensus       310 ~  310 (331)
T 3u4y_A          310 V  310 (331)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=3.4e-16  Score=160.05  Aligned_cols=292  Identities=14%  Similarity=0.138  Sum_probs=161.9

Q ss_pred             eeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEec---CCCceEEEEEecCCCcccccCCccceeeCC---CC
Q 039497          172 NTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQA---DDGWWSIFRVSFPENLEFLGFPIAPTRVTP---PG  242 (642)
Q Consensus       172 ~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~---~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~  242 (642)
                      +..+|.++.++++.+.+.....   ..++|+|||+++|+...   ..+...+|.++..++        ..+.+..   .+
T Consensus        28 ~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g--------~~~~~~~~~~~~   99 (361)
T 3scy_A           28 GIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG--------TLHLLNTQKTMG   99 (361)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT--------EEEEEEEEECSS
T ss_pred             CEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC--------cEEEeeEeccCC
Confidence            3344445556777766654322   34599999986666633   346678888887765        3333322   22


Q ss_pred             CccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCC
Q 039497          243 VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV  322 (642)
Q Consensus       243 ~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (642)
                      .....+++  ||++|+++....    ..+.+|++..........          ......+.               +..
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~----~~v~~~~~~~~g~~~~~~----------~~~~~~g~---------------~~~  148 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSG----GSITVFPIGQDGALLPAS----------DVIEFKGS---------------GPD  148 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTT----TEEEEEEBCTTSCBCSCS----------EEEECCCC---------------CSC
T ss_pred             CCcEEEEE--CCCEEEEEECCC----CEEEEEEeCCCCcCcccc----------eeEEccCC---------------CCC
Confidence            23333444  999888765332    368888873221100000          00000000               000


Q ss_pred             ceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC--CC----C-ee------EEee--cCCceeeeeecCCCEE
Q 039497          323 KELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD--GS----K-RW------TLIK--DRTAFYNSWSPTEKHV  387 (642)
Q Consensus       323 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~--~~----~-~~------~l~~--~~~~~~~~~spdg~~l  387 (642)
                      .. .........+.|+|||++|++.....  ..|++++++  ++    + ..      ....  ......+.|+|||++|
T Consensus       149 ~~-~~~~~~~~~~~~spdg~~l~~~~~~~--~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l  225 (361)
T 3scy_A          149 KE-RQTMPHLHCVRITPDGKYLLADDLGT--DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA  225 (361)
T ss_dssp             TT-TCSSCCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred             cc-ccCCCcceEEEECCCCCEEEEEeCCC--CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE
Confidence            00 00000012368999999888876433  455555544  43    2 21      1111  4456789999999999


Q ss_pred             EEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCeEEEEeCC-CCceeEEE
Q 039497          388 IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKFLVFRSGR-SGHKNLFV  464 (642)
Q Consensus       388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~l~~~~~~-~g~~~l~~  464 (642)
                      ++...      ....+.+|+++.        +..+   ....+....  ......++|||||++|+++... .+...||.
T Consensus       226 ~v~~~------~~~~v~v~~~~~--------g~~~---~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~  288 (361)
T 3scy_A          226 YLINE------IGGTVIAFRYAD--------GMLD---EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK  288 (361)
T ss_dssp             EEEET------TTCEEEEEEEET--------TEEE---EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred             EEEcC------CCCeEEEEEecC--------CceE---EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence            88873      367888998864        1100   112222111  0224578999999998877654 34334444


Q ss_pred             EECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497          465 LDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       465 ~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  529 (642)
                      ++..+|+. ..+..+.. ......++|+|||++|++.....     +...+|.+|.++++.+.+.
T Consensus       289 ~~~~~g~~-~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~-----~~v~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          289 VDETNGTL-TKVGYQLT-GIHPRNFIITPNGKYLLVACRDT-----NVIQIFERDQATGLLTDIK  346 (361)
T ss_dssp             ECTTTCCE-EEEEEEEC-SSCCCEEEECTTSCEEEEEETTT-----TEEEEEEECTTTCCEEECS
T ss_pred             EcCCCCcE-EEeeEecC-CCCCceEEECCCCCEEEEEECCC-----CCEEEEEEECCCCcEeecc
Confidence            44346663 11222322 23456789999999999887654     4566777888888877654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=4.1e-17  Score=165.79  Aligned_cols=230  Identities=13%  Similarity=0.128  Sum_probs=151.9

Q ss_pred             CCCccEEcCCCCEEEEEecCC--CceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCC------------c
Q 039497          331 NGSFPSFSPDGGLIVFNHDFE--LNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPI------------F  396 (642)
Q Consensus       331 ~~~~~~~spdg~~l~~~~~~~--~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~------------~  396 (642)
                      ....+.|||||++|+|.....  +..+||++++++++.++++....+..+.|||||+.|+|......            +
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~  139 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA  139 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence            345689999999999987643  56789999999998888776222889999999999999874210            0


Q ss_pred             c-cC-----CCeEEEEEEEeecCCCCCCCCCccccce-EEccccCCCCccCcEECCCCCeEEEEeCCCC-------ceeE
Q 039497          397 Q-SE-----RATVQIARVSFQLDPSDDNNREEIPCDV-KILTKEETGNNAFPSCSPDGKFLVFRSGRSG-------HKNL  462 (642)
Q Consensus       397 ~-~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g-------~~~l  462 (642)
                      . .+     .....|+.++.  .     ++     .. +.++. .  .+..+.|||||  ++|.+....       ..+|
T Consensus       140 ~~~g~~~~~~~~~~l~~~d~--~-----~~-----~~~~~l~~-~--~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l  202 (347)
T 2gop_A          140 WFDDLGFFDGEKTTFWIFDT--E-----SE-----EVIEEFEK-P--RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDI  202 (347)
T ss_dssp             C---------CEEEEEEEET--T-----TT-----EEEEEEEE-E--TTCEEEEETTE--EEEEEECCCSSCCSSCCEEE
T ss_pred             eecCcccccCccceEEEEEC--C-----CC-----eEEeeecC-C--CcccccCCCCe--EEEEEecccccccccccccE
Confidence            0 00     11456666665  3     33     44 55554 2  56678999999  666654432       4589


Q ss_pred             EEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccc
Q 039497          463 FVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE  542 (642)
Q Consensus       463 ~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~  542 (642)
                      |+++  +|+.    +.|+.. ....  .+||||++|+|.+...........+||++|  +++.+.++. ....       
T Consensus       203 ~~~d--~~~~----~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~-~~~~-------  263 (347)
T 2gop_A          203 YIWE--DGKE----EKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD-EVDR-------  263 (347)
T ss_dssp             EEEE--TTEE----EEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST-TCCS-------
T ss_pred             EEeC--CCce----EEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc-cCCc-------
Confidence            9999  5763    666654 3333  449999999999865421122356799999  666666654 2222       


Q ss_pred             cccc-eEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeec
Q 039497          543 RINH-VCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       543 ~~~~-~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                      .+.. +.|+ ||  +++.+...+..              +|| ++ + ++..+++.....+..++|+|  +++++..
T Consensus       264 ~~~~~~~~s-dg--~~~~~~~~~~~--------------~l~-~~-~-g~~~~~~~~~~~v~~~~~s~--~~~~~~~  318 (347)
T 2gop_A          264 GVGQAKIKD-GK--VYFTLFEEGSV--------------NLY-IW-D-GEIKPIAKGRHWIMGFDVDE--IVVYLKE  318 (347)
T ss_dssp             EEEEEEEET-TE--EEEEEEETTEE--------------EEE-EE-S-SSEEEEECSSSEEEEEEESS--SEEEEEE
T ss_pred             ccCCccEEc-Cc--EEEEEecCCcE--------------EEE-Ec-C-CceEEEecCCCeEEeeeeeC--cEEEEEc
Confidence            3454 8899 88  66665554432              788 88 4 45666666555567789999  4444433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.77  E-value=4.1e-16  Score=167.69  Aligned_cols=364  Identities=10%  Similarity=0.055  Sum_probs=216.4

Q ss_pred             ceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cCC-CcceEeeCCeEEEEEecCCCceEEEEEec
Q 039497          145 PSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ERG-GWPTWSGDSTIYFHRQADDGWWSIFRVSF  222 (642)
Q Consensus       145 ~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~wspdg~~~~~~~~~~g~~~l~~~~~  222 (642)
                      ..++|+|+.++....+.            .|.+|+..+++...... ... ..++++|||+.+|+.+ .++  .|..+++
T Consensus       143 ~~~~p~~~~~vs~~~d~------------~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~-~d~--~V~v~D~  207 (543)
T 1nir_A          143 NDLDLPNLFSVTLRDAG------------QIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG-RDA--RIDMIDL  207 (543)
T ss_dssp             SCCCGGGEEEEEEGGGT------------EEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEE-TTS--EEEEEET
T ss_pred             cccCCCCEEEEEEcCCC------------eEEEEECCCceEEEEEecCcccceEEECCCCCEEEEEC-CCC--eEEEEEC
Confidence            35899997766655444            78999999988655544 222 2457999998888874 345  5666676


Q ss_pred             --CCCcccccCCccceeeCCCCCccccceeec----CCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEE
Q 039497          223 --PENLEFLGFPIAPTRVTPPGVHCFTPAAFH----DGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFI  296 (642)
Q Consensus       223 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp----dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l  296 (642)
                        .++.       ....+. .+.....++|||    ||++|++.....    ..+.+||..+              ++.+
T Consensus       208 ~~~t~~-------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~----~~v~v~D~~t--------------~~~~  261 (543)
T 1nir_A          208 WAKEPT-------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWP----PQFAIMDGET--------------LEPK  261 (543)
T ss_dssp             TSSSCE-------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEES----SEEEEEETTT--------------CCEE
T ss_pred             cCCCCc-------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccC----CeEEEEeccc--------------cccc
Confidence              5552       233343 344567889999    999988865432    2678887622              1112


Q ss_pred             EEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE---eecC
Q 039497          297 GYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL---IKDR  373 (642)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~  373 (642)
                      ......+..            .+..  .. ........+.+||+++.+++...  ....|+++|....+...+   ....
T Consensus       262 ~~i~~~g~~------------~~~~--~~-~~~~~v~~i~~s~~~~~~~vs~~--~~g~i~vvd~~~~~~l~~~~i~~~~  324 (543)
T 1nir_A          262 QIVSTRGMT------------VDTQ--TY-HPEPRVAAIIASHEHPEFIVNVK--ETGKVLLVNYKDIDNLTVTSIGAAP  324 (543)
T ss_dssp             EEEECCEEC------------SSSC--CE-ESCCCEEEEEECSSSSEEEEEET--TTTEEEEEECTTSSSCEEEEEECCS
T ss_pred             eeecccCcc------------cCcc--cc-ccCCceEEEEECCCCCEEEEEEC--CCCeEEEEEecCCCcceeEEeccCc
Confidence            211110000            0000  00 00001124578999988777653  356899999877553332   2245


Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC-CCccCcE-ECCCCCeEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET-GNNAFPS-CSPDGKFLV  451 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~-~SpDg~~l~  451 (642)
                      ....+.|+|||++|+.+..      .++.+.+|++..         ++    ....+..... ....... ++|++..++
T Consensus       325 ~~~~~~~spdg~~l~va~~------~~~~v~v~D~~t---------g~----l~~~i~~g~~ph~g~g~~~~~p~~g~~~  385 (543)
T 1nir_A          325 FLHDGGWDSSHRYFMTAAN------NSNKVAVIDSKD---------RR----LSALVDVGKTPHPGRGANFVHPKYGPVW  385 (543)
T ss_dssp             SCCCEEECTTSCEEEEEEG------GGTEEEEEETTT---------TE----EEEEEECSSSBCCTTCEEEEETTTEEEE
T ss_pred             CccCceECCCCCEEEEEec------CCCeEEEEECCC---------Ce----EEEeeccCCCCCCCCCcccCCCCCccEE
Confidence            6778999999999987774      366788877643         21    2233332110 0001223 478876766


Q ss_pred             EEeCCCCceeEEEEECCC-------CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497          452 FRSGRSGHKNLFVLDAVN-------GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG  524 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~-------g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~  524 (642)
                      .+... +...|.+|++++       ++.   ++.|..+......+.++|||++|+....-+. .......|.+||+++.+
T Consensus       386 ~s~~~-~d~~V~v~d~~~~~~~~~~~~~---v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~-~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          386 STSHL-GDGSISLIGTDPKNHPQYAWKK---VAELQGQGGGSLFIKTHPKSSHLYVDTTFNP-DARISQSVAVFDLKNLD  460 (543)
T ss_dssp             EEEBS-SSSEEEEEECCTTTCTTTBTSE---EEEEECSCSCCCCEECCTTCCEEEECCTTCS-SHHHHTCEEEEETTCTT
T ss_pred             EeccC-CCceEEEEEeCCCCCchhcCeE---EEEEEcCCCCceEEEcCCCCCcEEEecCCCC-CcccCceEEEEECCCCC
Confidence            55432 334788999887       554   5666655445567899999999888763110 00013359999998876


Q ss_pred             eE-Eee-e------cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497          525 LR-RIH-V------AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       525 ~~-~l~-~------~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                      .. .+. .      .....       .+.++.|+|||+.|+++...+..            ....|.+||..++++....
T Consensus       461 ~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~g~~~~~s~~~~~~------------~~~~i~v~D~~t~~~~~~i  521 (543)
T 1nir_A          461 AKYQVLPIAEWADLGEGAK-------RVVQPEYNKRGDEVWFSVWNGKN------------DSSALVVVDDKTLKLKAVV  521 (543)
T ss_dssp             SCCEEECHHHHHCCCSSCC-------EEEEEEECSSSSEEEEEEECCTT------------SCCEEEEEETTTTEEEEEE
T ss_pred             CCeEEeechhhcccCCCCC-------ceEeccCCCCCCEEEEEeecCCC------------CCCeEEEEECCCceEEEee
Confidence            53 221 1      01122       67889999999999987532100            0238999999988755433


Q ss_pred             CCCCCCCCcEEecCCceE
Q 039497          597 WNGYENGTPAWHPGNQLD  614 (642)
Q Consensus       597 ~~~~~~~~~~~s~dg~~~  614 (642)
                      ....     ..+|+|++-
T Consensus       522 ~~~~-----~~~p~g~~~  534 (543)
T 1nir_A          522 KDPR-----LITPTGKFN  534 (543)
T ss_dssp             CCTT-----CCSEEEEEE
T ss_pred             cCCC-----ccCCCeeee
Confidence            3211     345777664

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.77  E-value=6.4e-17  Score=163.94  Aligned_cols=223  Identities=13%  Similarity=0.129  Sum_probs=155.8

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      ...+|+||++ |+..+.   ...|.++|+++++......      ...+..+.|+|||++|+..+.       ++.+++|
T Consensus        86 ~~~~~s~d~~-l~~~s~---dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~-------d~~i~iw  154 (344)
T 4gqb_B           86 ADLTWVGERG-ILVASD---SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK-------DICIKVW  154 (344)
T ss_dssp             EEEEEETTTE-EEEEET---TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET-------TSCEEEE
T ss_pred             EEEEEeCCCe-EEEEEC---CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC-------CCeEEEE
Confidence            4568999964 555443   3568888887776433221      456889999999999988874       7889999


Q ss_pred             EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCC
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPW  484 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~  484 (642)
                      ++..        +.     ....+..+. ..+..+.|+|+++.++.+...+  ..|.+||+.+++.   ...+..  ...
T Consensus       155 d~~~--------~~-----~~~~~~~h~-~~V~~~~~~~~~~~~l~s~s~D--~~v~iwd~~~~~~---~~~~~~~~~~~  215 (344)
T 4gqb_B          155 DLAQ--------QV-----VLSSYRAHA-AQVTCVAASPHKDSVFLSCSED--NRILLWDTRCPKP---ASQIGCSAPGY  215 (344)
T ss_dssp             ETTT--------TE-----EEEEECCCS-SCEEEEEECSSCTTEEEEEETT--SCEEEEETTSSSC---EEECC----CC
T ss_pred             ECCC--------Cc-----EEEEEcCcC-CceEEEEecCCCCCceeeeccc--cccccccccccce---eeeeecceeec
Confidence            9855        22     455566555 7788899999998765554433  3789999998886   555543  223


Q ss_pred             cccceeEecCC-CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEE-EEec
Q 039497          485 IDTMPSWSPKG-DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLF-TANL  562 (642)
Q Consensus       485 ~~~~~~~spdG-~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~-~~~~  562 (642)
                      .+..+.|+|++ ++|+..+.++.        |.+||+.+++...... ++..       .+..++|||||..+++ .+.+
T Consensus       216 ~~~~~~~~p~~~~~l~sg~~dg~--------v~~wd~~~~~~~~~~~-~h~~-------~v~~v~fsp~g~~~lasgs~D  279 (344)
T 4gqb_B          216 LPTSLAWHPQQSEVFVFGDENGT--------VSLVDTKSTSCVLSSA-VHSQ-------CVTGLVFSPHSVPFLASLSED  279 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSE--------EEEEESCC--CCEEEE-CCSS-------CEEEEEECSSSSCCEEEEETT
T ss_pred             cceeeeecCCCCcceEEeccCCc--------EEEEECCCCcEEEEEc-CCCC-------CEEEEEEccCCCeEEEEEeCC
Confidence            45678999965 55555555543        9999998776543332 4444       5788999999965444 4444


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEE-eec
Q 039497          563 GAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDL-GKL  618 (642)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~-~~~  618 (642)
                      +                 .|.+||+..+++.++..+...+.+++|||+++.++ +..
T Consensus       280 ~-----------------~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s  319 (344)
T 4gqb_B          280 C-----------------SLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVG  319 (344)
T ss_dssp             S-----------------CEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             C-----------------eEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEc
Confidence            3                 78889999998888888888889999999997654 443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.77  E-value=1.5e-17  Score=169.75  Aligned_cols=278  Identities=11%  Similarity=0.059  Sum_probs=173.0

Q ss_pred             CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC--Ccee--EEeee--CCCccEEcCCCCEEEEEecCCCc
Q 039497          280 PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP--VKEL--RMLRL--NGSFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       280 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~--~~~~~~~spdg~~l~~~~~~~~~  353 (642)
                      +...+...+|||||+.|+....+....-+  ..+++......  ...+  .....  ....++|+||++.++ .+.   .
T Consensus        41 H~~~V~~v~fSpDG~~las~s~d~~~~wd--~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-~s~---d  114 (357)
T 4g56_B           41 MEVQIGAVRYRRDGALLLAASSLSSRTWG--GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-ASD---S  114 (357)
T ss_dssp             CCSEEEEEEECSSSCEEEEEECSSSSSCC--EEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-EET---T
T ss_pred             ccCCEEEEEECCCCCEEEEEcCCCCcccc--CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-EEC---C
Confidence            44456677999999999887543221000  01122221111  1111  11111  124578999987554 332   3


Q ss_pred             eeEEEEECCCCCeeEE---e---ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497          354 AGIKIAKSDGSKRWTL---I---KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV  427 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l---~---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  427 (642)
                      ..|.++|+.+++....   .   ....+..+.|+|||+.|+..+.       ++.+++|++..        +.     ..
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-------dg~v~iwd~~~--------~~-----~~  174 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-------DFSVKVWDLSQ--------KA-----VL  174 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-------TSCEEEEETTT--------TE-----EE
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-------CCeEEEEECCC--------Cc-----EE
Confidence            4677788776653221   1   1456889999999999988774       68899998754        12     44


Q ss_pred             EEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC--CCCCcccceeEecCCC-EEEEEecC
Q 039497          428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT--DGPWIDTMPSWSPKGD-LIAFSSNR  504 (642)
Q Consensus       428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~--~~~~~~~~~~~spdG~-~l~~~~~~  504 (642)
                      ..+..+. ..+..++|+|+++.++.+...+  ..|.+||+.+++.   ...+.  .....+..++|+|++. +|+..+.+
T Consensus       175 ~~~~~h~-~~v~~v~~s~~~~~~~~s~~~d--g~v~~wd~~~~~~---~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d  248 (357)
T 4g56_B          175 KSYNAHS-SEVNCVAACPGKDTIFLSCGED--GRILLWDTRKPKP---ATRIDFCASDTIPTSVTWHPEKDDTFACGDET  248 (357)
T ss_dssp             EEECCCS-SCEEEEEECTTCSSCEEEEETT--SCEEECCTTSSSC---BCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred             EEEcCCC-CCEEEEEEccCCCceeeeeccC--CceEEEECCCCce---eeeeeeccccccccchhhhhcccceEEEeecc
Confidence            5555555 6778899999997655444433  3789999988875   33333  2334567789999864 55555555


Q ss_pred             CCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497          505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV  584 (642)
Q Consensus       505 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  584 (642)
                      +.        |++||+.+++...... ....       .+..++||||++.++++....+                .|.+
T Consensus       249 ~~--------i~~wd~~~~~~~~~~~-~~~~-------~v~~l~~sp~~~~~lasgs~D~----------------~i~i  296 (357)
T 4g56_B          249 GN--------VSLVNIKNPDSAQTSA-VHSQ-------NITGLAYSYHSSPFLASISEDC----------------TVAV  296 (357)
T ss_dssp             SC--------EEEEESSCGGGCEEEC-CCSS-------CEEEEEECSSSSCCEEEEETTS----------------CEEE
T ss_pred             cc--------eeEEECCCCcEeEEEe-ccce-------eEEEEEEcCCCCCEEEEEeCCC----------------EEEE
Confidence            43        9999998876544332 3333       5788999999965544443322                7888


Q ss_pred             EEcCCCceeeccCCCCCCCCcEEec-CCceEEeecCCC
Q 039497          585 VKLDGSGLRRLTWNGYENGTPAWHP-GNQLDLGKLRLE  621 (642)
Q Consensus       585 ~~~~~~~~~~lt~~~~~~~~~~~s~-dg~~~~~~~~~~  621 (642)
                      ||+.++++.+...+...+..++||| |+++|++....+
T Consensus       297 wd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg  334 (357)
T 4g56_B          297 LDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDH  334 (357)
T ss_dssp             ECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             EECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCC
Confidence            9999888777777777788999998 789888765433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=2.8e-16  Score=159.86  Aligned_cols=227  Identities=7%  Similarity=0.003  Sum_probs=155.4

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-C----------CceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-R----------TAFYNSWSPTEKHVIYTSTGPIFQSERA  401 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~----------~~~~~~~spdg~~l~~~~~~~~~~~~~~  401 (642)
                      ..+.|+|||+++++...  ....|+++|+++++....... .          ....+.|+|||+++++....     .+.
T Consensus        92 ~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~  164 (353)
T 3vgz_A           92 FGATINNTTQTLWFGNT--VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-----KES  164 (353)
T ss_dssp             CSEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-----SSC
T ss_pred             ceEEECCCCCEEEEEec--CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-----CCc
Confidence            46789999998877664  245899999998876554431 1          15678999999998887732     244


Q ss_pred             eEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC
Q 039497          402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD  481 (642)
Q Consensus       402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~  481 (642)
                      .+.+|++..         +.    ....+.... .....+.|+|||++|++...   ...|+++|+.+++.   ...+..
T Consensus       165 ~i~~~d~~~---------~~----~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~---~~~i~~~d~~~~~~---~~~~~~  224 (353)
T 3vgz_A          165 VIWVVDGGN---------IK----LKTAIQNTG-KMSTGLALDSEGKRLYTTNA---DGELITIDTADNKI---LSRKKL  224 (353)
T ss_dssp             EEEEEETTT---------TE----EEEEECCCC-TTCCCCEEETTTTEEEEECT---TSEEEEEETTTTEE---EEEEEC
T ss_pred             eEEEEcCCC---------Cc----eEEEecCCC-CccceEEECCCCCEEEEEcC---CCeEEEEECCCCeE---EEEEEc
Confidence            555655432         21    333333222 34677899999999887764   34899999998885   344432


Q ss_pred             ----CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497          482 ----GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL  557 (642)
Q Consensus       482 ----~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~  557 (642)
                          .......++|+|||++|++.....       ..|+++|+.+++........          ....+.|+|||++|+
T Consensus       225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------~~v~~~d~~~~~~~~~~~~~----------~~~~~~~s~dg~~l~  287 (353)
T 3vgz_A          225 LDDGKEHFFINISLDTARQRAFITDSKA-------AEVLVVDTRNGNILAKVAAP----------ESLAVLFNPARNEAY  287 (353)
T ss_dssp             CCSSSCCCEEEEEEETTTTEEEEEESSS-------SEEEEEETTTCCEEEEEECS----------SCCCEEEETTTTEEE
T ss_pred             CCCCCCcccceEEECCCCCEEEEEeCCC-------CEEEEEECCCCcEEEEEEcC----------CCceEEECCCCCEEE
Confidence                122344579999999998877543       35999999888765544322          124689999999988


Q ss_pred             EEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCce-EEeecC
Q 039497          558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL-DLGKLR  619 (642)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~-~~~~~~  619 (642)
                      ++....+                .|++||..+++.......+.....++|+|||++ +++..+
T Consensus       288 v~~~~~~----------------~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          288 VTHRQAG----------------KVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEETTTT----------------EEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             EEECCCC----------------eEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            7764432                899999988775544444445578899999985 466544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.77  E-value=8.3e-16  Score=153.12  Aligned_cols=284  Identities=11%  Similarity=0.043  Sum_probs=190.9

Q ss_pred             ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEec
Q 039497          134 RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQA  210 (642)
Q Consensus       134 ~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~  210 (642)
                      .+..+.......+|||||++||....++            .|.+|++.++...+......   ....|+|++.++++. .
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg------------~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s   74 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSG------------RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-S   74 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTS------------EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEE-E
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCC------------cEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEE-C
Confidence            3444555566789999999999988666            78999999887554444332   245899999888887 4


Q ss_pred             CCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeec
Q 039497          211 DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS  290 (642)
Q Consensus       211 ~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s  290 (642)
                      .++  .|..++..++.       ....+..+...+..++|+|++++|+....++     .+.+||+....          
T Consensus        75 ~d~--~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~~----------  130 (304)
T 2ynn_A           75 DDF--RIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWENNW----------  130 (304)
T ss_dssp             TTS--EEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTS-----CEEEEEGGGTT----------
T ss_pred             CCC--EEEEEECCCCc-------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCC-----eEEEEECCCCc----------
Confidence            577  45555666663       4556666766788899999999988865544     89999973211          


Q ss_pred             CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEE
Q 039497          291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTL  369 (642)
Q Consensus       291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l  369 (642)
                          .+..                  .+.+....       .....|+| +++.|+..+.   ...|.++|+........
T Consensus       131 ----~~~~------------------~~~~h~~~-------v~~v~~~p~~~~~l~sgs~---D~~v~iwd~~~~~~~~~  178 (304)
T 2ynn_A          131 ----ALEQ------------------TFEGHEHF-------VMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTPNFT  178 (304)
T ss_dssp             ----EEEE------------------EECCCCSC-------EEEEEECTTCTTEEEEEET---TSEEEEEETTCSSCSEE
T ss_pred             ----chhh------------------hhcccCCc-------EEEEEECCCCCCEEEEEeC---CCeEEEEECCCCCccce
Confidence                0000                  00000001       12458898 5777776554   35788888876654333


Q ss_pred             ee---cCCceeeeeec--CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEEC
Q 039497          370 IK---DRTAFYNSWSP--TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCS  444 (642)
Q Consensus       370 ~~---~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S  444 (642)
                      ..   ...+..+.|+|  +++.|+..+.       ++.+++|++..        +.     ....+..+. ..+..+.|+
T Consensus       179 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~-------D~~i~iWd~~~--------~~-----~~~~~~~h~-~~v~~~~~~  237 (304)
T 2ynn_A          179 LTTGQERGVNYVDYYPLPDKPYMITASD-------DLTIKIWDYQT--------KS-----CVATLEGHM-SNVSFAVFH  237 (304)
T ss_dssp             EECCCTTCEEEEEECCSTTCCEEEEEET-------TSEEEEEETTT--------TE-----EEEEEECCS-SCEEEEEEC
T ss_pred             eccCCcCcEEEEEEEEcCCCCEEEEEcC-------CCeEEEEeCCC--------Cc-----cceeeCCCC-CCEEEEEEC
Confidence            22   34566677776  6777877763       78999999854        22     455566555 677889999


Q ss_pred             CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCE--EEEEecCCCCCCCCceeEEEEeCCC
Q 039497          445 PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDL--IAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       445 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~--l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      |+++.|+..+.   +..|.+||+.+++.   ...+..+...+..++|+|+|+.  |+....++         +.++++..
T Consensus       238 p~~~~l~s~s~---Dg~i~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g---------~~~~~~~~  302 (304)
T 2ynn_A          238 PTLPIIISGSE---DGTLKIWNSSTYKV---EKTLNVGLERSWCIATHPTGRKNYIASGFDNG---------FTVLSLGN  302 (304)
T ss_dssp             SSSSEEEEEET---TSCEEEEETTTCCE---EEEECCSSSSEEEEEECTTCGGGCEEEEETTE---------EEEEECC-
T ss_pred             CCCCEEEEEcC---CCeEEEEECCCCce---eeeccCCCccEEEEEECCCCCceEEEEecCCc---------eEEEEecc
Confidence            99998887764   34799999999886   6677766666778899998864  44444332         67777643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=1.5e-15  Score=154.18  Aligned_cols=278  Identities=13%  Similarity=0.102  Sum_probs=167.3

Q ss_pred             ceEEEEccCCceEeccc--CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee---cCC--
Q 039497          121 ALYSTDLKASKFTRLTP--YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC---ERG--  193 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~~~--  193 (642)
                      .+|.++..+++.+.+..  .......++|||||+ |+++....         ....|++|++.+++.+.+..   ...  
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~---------~~~~v~~~~~~~g~~~~~~~~~~~~~~p   88 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKED---------DEGGIAAWQIDGQTAHKLNTVVAPGTPP   88 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEET---------TEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred             EEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecC---------CCceEEEEEecCCcEEEeeeeecCCCCC
Confidence            58888888888766542  334456789999999 66665422         25689999998887666554   111  


Q ss_pred             CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCC---------CccccceeecCCcEEEEEEecc
Q 039497          194 GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPG---------VHCFTPAAFHDGKRLAVATRRK  264 (642)
Q Consensus       194 ~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~SpdG~~l~~~~~~~  264 (642)
                      ..++|+|||+.+|+....++...+|.++..+...      ....+...+         ..+..++|+|||+ ++++....
T Consensus        89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~------~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~  161 (347)
T 3hfq_A           89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALT------LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGS  161 (347)
T ss_dssp             SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE------EEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTT
T ss_pred             EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee------ecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCC
Confidence            3569999998777764566766777765433210      112221111         1234578899999 65543322


Q ss_pred             CCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEE
Q 039497          265 NRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLI  344 (642)
Q Consensus       265 ~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  344 (642)
                          ..+++|++.             ++|+.......               .....        .....+.|+|||++|
T Consensus       162 ----~~v~~~~~~-------------~~g~~~~~~~~---------------~~~~g--------~~p~~~~~spdg~~l  201 (347)
T 3hfq_A          162 ----DKVYVYNVS-------------DAGQLSEQSVL---------------TMEAG--------FGPRHLVFSPDGQYA  201 (347)
T ss_dssp             ----TEEEEEEEC-------------TTSCEEEEEEE---------------ECCTT--------CCEEEEEECTTSSEE
T ss_pred             ----CEEEEEEEC-------------CCCcEEEeeeE---------------EcCCC--------CCCceEEECCCCCEE
Confidence                267788773             12221111100               00000        001245899999988


Q ss_pred             EEEecCCCceeEEEEECCCCCeeEEee----c------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          345 VFNHDFELNAGIKIAKSDGSKRWTLIK----D------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       345 ~~~~~~~~~~~l~~~d~~~~~~~~l~~----~------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      ++.....+...+|.++..+++...+..    .      .....++|+|||++|+++..      ....+.+|+++.  + 
T Consensus       202 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~------~~~~v~v~~~~~--~-  272 (347)
T 3hfq_A          202 FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR------GYNTLAVFAVTA--D-  272 (347)
T ss_dssp             EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE------TTTEEEEEEECG--G-
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC------CCCEEEEEEECC--C-
Confidence            887654444455555544555433322    1      23567899999999988764      367899999864  1 


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~  472 (642)
                           +..  .....+.... .....++|||||++|+++...++...||.+|..+|+.
T Consensus       273 -----g~~--~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          273 -----GHL--TLIQQISTEG-DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             -----GCE--EEEEEEECSS-SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             -----CcE--EEeEEEecCC-CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence                 200  0222333322 3466789999999999888766666677778888874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.76  E-value=3.8e-16  Score=158.65  Aligned_cols=287  Identities=15%  Similarity=0.116  Sum_probs=180.9

Q ss_pred             eeeCCCCC-ccccceeecCCcEEEEEEeccCCceeeEEEEEeec-----------CCCCcccCCeecCCCCEEEEEEeec
Q 039497          236 TRVTPPGV-HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL-----------NPNFHHYNPFVSANSEFIGYHRFRG  303 (642)
Q Consensus       236 ~~l~~~~~-~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~-----------~~~~~~~~~~~spDg~~l~~~~~~~  303 (642)
                      ..+..+.. .+..++|||||++|+....++     .|++||+..           ++...+...+|+|||+.|+....++
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTS-----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCC-----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            44555543 677889999999999866554     799998832           3455567789999999999876655


Q ss_pred             CCCCCCcccceEeeccCCCceeEEeee---CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE-Ee--e--cCCc
Q 039497          304 ESTEGQSTIPHLEPVASPVKELRMLRL---NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT-LI--K--DRTA  375 (642)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~--~--~~~~  375 (642)
                      .      ..+|..... ....+.....   ....+.|+|+|++|+..+.   ...|.++++..+.... +.  .  ...+
T Consensus        84 ~------v~iw~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           84 T------TCIWKKNQD-DFECVTTLEGHENEVKSVAWAPSGNLLATCSR---DKSVWVWEVDEEDEYECVSVLNSHTQDV  153 (345)
T ss_dssp             C------EEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred             c------EEEEEccCC-CeEEEEEccCCCCCceEEEEeCCCCEEEEEEC---CCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence            4      334432211 1111111111   1245789999998888764   2567777876654322 21  1  4567


Q ss_pred             eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC
Q 039497          376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG  455 (642)
Q Consensus       376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~  455 (642)
                      ..+.|+|+++.|+..+.       ++.+++|++..  .      ...   ....+..+. ..+..++|+|||++|+..+.
T Consensus       154 ~~~~~~p~~~~l~s~s~-------d~~i~~w~~~~--~------~~~---~~~~~~~h~-~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          154 KHVVWHPSQELLASASY-------DDTVKLYREEE--D------DWV---CCATLEGHE-STVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             EEEEECSSSSCEEEEET-------TSCEEEEEEET--T------EEE---EEEEECCCS-SCEEEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCCEEEEEeC-------CCcEEEEEecC--C------CEE---EEEEecCCC-CceEEEEECCCCCEEEEEeC
Confidence            88999999999988874       68899999865  1      100   123445554 67888999999999987774


Q ss_pred             CCCceeEEEEECCCCcccc------------ceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          456 RSGHKNLFVLDAVNGEFNG------------DIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       456 ~~g~~~l~~~d~~~g~~~~------------~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      + +  .|.+|+...+....            .+..+.. +...+..++|+|++..|+..+.++.        |.+|+.+.
T Consensus       215 D-~--~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~--------i~vw~~~~  283 (345)
T 3fm0_A          215 D-R--TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA--------IRVFQEDP  283 (345)
T ss_dssp             T-S--CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC--------EEEEEECT
T ss_pred             C-C--eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe--------EEEEEeCC
Confidence            3 3  56666643221100            0111221 3345677899999999998887764        77777765


Q ss_pred             Cce------EE-ee-ecCCCCCCCcccccccceEEcCCCC-EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497          523 SGL------RR-IH-VAGPEGSGDVDRERINHVCFSADGE-WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG  591 (642)
Q Consensus       523 ~~~------~~-l~-~~~~~~~~~~~~~~~~~~~~S~Dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  591 (642)
                      +..      .. .. ..++..       .+..++|+|++. .|+..+.++                 .|.+|++..++
T Consensus       284 ~~~~~~~~~~~~~~~~~~h~~-------~V~~v~~~p~~~~~laS~s~Dg-----------------~v~~W~~~~~~  337 (345)
T 3fm0_A          284 NSDPQQPTFSLTAHLHQAHSQ-------DVNCVAWNPKEPGLLASCSDDG-----------------EVAFWKYQRPE  337 (345)
T ss_dssp             TSCTTSCCEEEEEEETTSSSS-------CEEEEEECSSSTTEEEEEETTS-----------------CEEEEEECC--
T ss_pred             CCCcceeeEEEEeeecccccC-------cEeEeEEeCCCceEEEEcCCCC-----------------cEEEEEecCCC
Confidence            421      11 11 123333       678899999985 566555554                 67777776644

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.76  E-value=2.7e-16  Score=159.25  Aligned_cols=280  Identities=12%  Similarity=-0.005  Sum_probs=175.5

Q ss_pred             ccccceeecCCcEEEEEEeccCCc-eeeEEEEEeec------------CCCCcccCCeecCCCCEEEEEEeecCCCCCCc
Q 039497          244 HCFTPAAFHDGKRLAVATRRKNRN-FRHIEIYDLTL------------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQS  310 (642)
Q Consensus       244 ~~~~~~~SpdG~~l~~~~~~~~~~-~~~i~~~d~~~------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  310 (642)
                      .+..++|||||+.|+........- ...+++|+...            .....+...+|+||++ |+....++.      
T Consensus        32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-l~~~s~dg~------  104 (344)
T 4gqb_B           32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG-ILVASDSGA------  104 (344)
T ss_dssp             EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE-EEEEETTSE------
T ss_pred             CEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe-EEEEECCCE------
Confidence            466788999999888755322111 11333333211            1123456678999964 555433332      


Q ss_pred             ccceEeeccCCCceeEEee--e--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCC
Q 039497          311 TIPHLEPVASPVKELRMLR--L--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTE  384 (642)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~--~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg  384 (642)
                      ..+|-.........+....  .  ....++|+|||++|+..+.   ...|.++|+.+++......  ...+..+.|+|++
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~---d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~  181 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK---DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK  181 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC---CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence            4444333222222222111  1  1245789999999888664   3578888998887554433  5678899999999


Q ss_pred             CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEE
Q 039497          385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLF  463 (642)
Q Consensus       385 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~  463 (642)
                      ..++++.      ..++.+++|++..        +.     ....+... ....+..+.|+|++..++.+...+  ..|.
T Consensus       182 ~~~l~s~------s~D~~v~iwd~~~--------~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d--g~v~  240 (344)
T 4gqb_B          182 DSVFLSC------SEDNRILLWDTRC--------PK-----PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN--GTVS  240 (344)
T ss_dssp             TTEEEEE------ETTSCEEEEETTS--------SS-----CEEECC----CCCEEEEEECSSCTTEEEEEETT--SEEE
T ss_pred             CCceeee------ccccccccccccc--------cc-----eeeeeecceeeccceeeeecCCCCcceEEeccC--CcEE
Confidence            7655444      2378999999865        22     34444322 113456789999766554444333  3799


Q ss_pred             EEECCCCccccceeeCCCCCCcccceeEecCCC-EEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccc
Q 039497          464 VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD-LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRE  542 (642)
Q Consensus       464 ~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~  542 (642)
                      +||+.+++.   +..+..+...+..++|+|||. +|+..+.++.        |++||+.+++...+  .++.+       
T Consensus       241 ~wd~~~~~~---~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~--------i~vwd~~~~~~~~~--~~H~~-------  300 (344)
T 4gqb_B          241 LVDTKSTSC---VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS--------LAVLDSSLSELFRS--QAHRD-------  300 (344)
T ss_dssp             EEESCC--C---CEEEECCSSCEEEEEECSSSSCCEEEEETTSC--------EEEECTTCCEEEEE--CCCSS-------
T ss_pred             EEECCCCcE---EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe--------EEEEECCCCcEEEE--cCCCC-------
Confidence            999998886   677777777888999999995 4666666554        99999988865443  35555       


Q ss_pred             cccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          543 RINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       543 ~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                      .+..++|||||+.|+++....+                .|..|++...
T Consensus       301 ~V~~v~~sp~~~~llas~s~D~----------------~v~~w~v~~~  332 (344)
T 4gqb_B          301 FVRDATWSPLNHSLLTTVGWDH----------------QVVHHVVPTE  332 (344)
T ss_dssp             CEEEEEECSSSTTEEEEEETTS----------------CEEEEECCC-
T ss_pred             CEEEEEEeCCCCeEEEEEcCCC----------------eEEEEECCCC
Confidence            6889999999988776654332                6777777654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.76  E-value=2.5e-16  Score=175.71  Aligned_cols=306  Identities=11%  Similarity=0.048  Sum_probs=197.4

Q ss_pred             ceEeeCC-eEEEEEecCC-CceEEEEEecCCCcccccCCccceeeCCCC-------CccccceeecCCcEEEEEEeccCC
Q 039497          196 PTWSGDS-TIYFHRQADD-GWWSIFRVSFPENLEFLGFPIAPTRVTPPG-------VHCFTPAAFHDGKRLAVATRRKNR  266 (642)
Q Consensus       196 ~~wspdg-~~~~~~~~~~-g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~SpdG~~l~~~~~~~~~  266 (642)
                      +..+||| +++|+..... ....||+++..++        ..+.++...       ..+..++|||||++|+|...+.++
T Consensus        73 ~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~  144 (695)
T 2bkl_A           73 STPSRRNGRFFYVRTHKDKEKAILYWRQGESG--------QEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAA  144 (695)
T ss_dssp             CCCEEETTEEEEEEECTTCSSCEEEEEESTTS--------CCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTC
T ss_pred             CCCEEECCEEEEEEEcCCCeEEEEEEEcCCCC--------CcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCC
Confidence            4556888 5667664332 2458999998776        556665432       245678899999999999888777


Q ss_pred             ceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEE
Q 039497          267 NFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVF  346 (642)
Q Consensus       267 ~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  346 (642)
                      ....|+++|+..+...                                  . .   ..  +.......+.|||||+.|+|
T Consensus       145 ~~~~i~v~dl~tg~~~----------------------------------~-~---~~--~~~~~~~~~~wspDg~~l~~  184 (695)
T 2bkl_A          145 DEAVLHVIDVDSGEWS----------------------------------K-V---DV--IEGGKYATPKWTPDSKGFYY  184 (695)
T ss_dssp             SCCEEEEEETTTCCBC----------------------------------S-S---CC--BSCCTTCCCEECTTSSEEEE
T ss_pred             ceEEEEEEECCCCCCc----------------------------------C-C---cc--cCcccccceEEecCCCEEEE
Confidence            7788999988332200                                  0 0   00  00011135688888888888


Q ss_pred             EecCCC----------ceeEEEEECCCCCe--eEEeec----CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          347 NHDFEL----------NAGIKIAKSDGSKR--WTLIKD----RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       347 ~~~~~~----------~~~l~~~d~~~~~~--~~l~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ......          ..+||++++.++..  +.+...    .....+.|||||++|++.+..     ......||.++.
T Consensus       185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~-----~~~~~~l~~~~~  259 (695)
T 2bkl_A          185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILR-----GWSENDVYWKRP  259 (695)
T ss_dssp             EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEE-----TTTEEEEEEECT
T ss_pred             EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeC-----CCCceEEEEEcC
Confidence            765322          45699999988763  233331    346688999999999998752     114566777654


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC-CceeEEEEECCCCccccceeeCCCC--CCccc
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQLTDG--PWIDT  487 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~  487 (642)
                        .     ++     ..+.|.... .....+.+ +||+ |++.++.+ ....|+++++++++. ...+.+...  ...+.
T Consensus       260 --~-----~~-----~~~~l~~~~-~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~l~  323 (695)
T 2bkl_A          260 --G-----EK-----DFRLLVKGV-GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR-ASWKEIVPEDSSASLL  323 (695)
T ss_dssp             --T-----CS-----SCEEEEECS-SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG-GGCEEEECCCSSCEEE
T ss_pred             --C-----CC-----ceEEeecCC-CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc-cCCeEEecCCCCCeEE
Confidence              2     23     556666554 44455566 7888 88887754 467999999987651 001444433  23345


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      .+.|+ + ..|++....+     +..+|++++++++..+.+... ..+       .+..+++++|++.|++.......  
T Consensus       324 ~~~~~-~-~~lv~~~~~d-----g~~~l~~~~~~g~~~~~l~~~-~~~-------~v~~~~~s~d~~~l~~~~ss~~~--  386 (695)
T 2bkl_A          324 SVSIV-G-GHLSLEYLKD-----ATSEVRVATLKGKPVRTVQLP-GVG-------AASNLMGLEDLDDAYYVFTSFTT--  386 (695)
T ss_dssp             EEEEE-T-TEEEEEEEET-----TEEEEEEEETTCCEEEECCCS-SSS-------EECCCBSCTTCSEEEEEEEETTE--
T ss_pred             EEEEE-C-CEEEEEEEEC-----CEEEEEEEeCCCCeeEEecCC-CCe-------EEEEeecCCCCCEEEEEEcCCCC--
Confidence            67777 4 4566665544     467899999877655555422 122       45667889999999988754332  


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCceeeccCC
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN  598 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~  598 (642)
                                 ...||.||+.+++.+.++..
T Consensus       387 -----------P~~v~~~d~~~g~~~~l~~~  406 (695)
T 2bkl_A          387 -----------PRQIYKTSVSTGKSELWAKV  406 (695)
T ss_dssp             -----------EEEEEEEETTTCCEEEEEEC
T ss_pred             -----------CCEEEEEECCCCcEEEEecC
Confidence                       23899999998887777643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.76  E-value=1.6e-15  Score=151.59  Aligned_cols=273  Identities=16%  Similarity=0.178  Sum_probs=182.8

Q ss_pred             cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecC
Q 039497          135 LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQAD  211 (642)
Q Consensus       135 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~  211 (642)
                      +..+.......+|||||++||....+.            .|.+|++.+++..+....+..   .++|+||+.++++. ..
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg------------~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~   85 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADK------------LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-SD   85 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTS------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ET
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCC------------eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEE-CC
Confidence            344444556789999999999987665            688999988876665543332   45999999888877 45


Q ss_pred             CCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecC
Q 039497          212 DGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSA  291 (642)
Q Consensus       212 ~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~sp  291 (642)
                      ++  .|..+++.++.       ....+..+...+..++|+|++++|+....++     .+.+||+...            
T Consensus        86 d~--~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~------------  139 (312)
T 4ery_A           86 DK--TLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVKTG------------  139 (312)
T ss_dssp             TS--EEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTC------------
T ss_pred             CC--EEEEEECCCCc-------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC------------
Confidence            67  45555666653       4455666666677889999999988865444     7889987321            


Q ss_pred             CCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee
Q 039497          292 NSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK  371 (642)
Q Consensus       292 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~  371 (642)
                        +.+...                   ......       ...+.|+|+|+.|+....   ...|.++|+..++......
T Consensus       140 --~~~~~~-------------------~~~~~~-------v~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~  188 (312)
T 4ery_A          140 --KCLKTL-------------------PAHSDP-------VSAVHFNRDGSLIVSSSY---DGLCRIWDTASGQCLKTLI  188 (312)
T ss_dssp             --CEEEEE-------------------CCCSSC-------EEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEEEC
T ss_pred             --EEEEEe-------------------cCCCCc-------EEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeEEe
Confidence              111100                   000001       124589999998877654   3578889998776544332


Q ss_pred             ---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC-CccCcEEC-CC
Q 039497          372 ---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG-NNAFPSCS-PD  446 (642)
Q Consensus       372 ---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~S-pD  446 (642)
                         ...+..+.|+|+++.|+..+.       ++.+++|++..        +.     ....+..+... ......++ ++
T Consensus       189 ~~~~~~~~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
T 4ery_A          189 DDDNPPVSFVKFSPNGKYILAATL-------DNTLKLWDYSK--------GK-----CLKTYTGHKNEKYCIFANFSVTG  248 (312)
T ss_dssp             CSSCCCEEEEEECTTSSEEEEEET-------TTEEEEEETTT--------TE-----EEEEECSSCCSSSCCCEEEECSS
T ss_pred             ccCCCceEEEEECCCCCEEEEEcC-------CCeEEEEECCC--------Cc-----EEEEEEecCCceEEEEEEEEeCC
Confidence               345677899999999988764       67899998754        11     33344333211 11223444 56


Q ss_pred             CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEec
Q 039497          447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSN  503 (642)
Q Consensus       447 g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~  503 (642)
                      +++|+..+ .  +..|++||+.+++.   +..+..+...+..++|+|+++.|+..+.
T Consensus       249 ~~~l~sg~-~--dg~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~p~~~~l~s~~~  299 (312)
T 4ery_A          249 GKWIVSGS-E--DNLVYIWNLQTKEI---VQKLQGHTDVVISTACHPTENIIASAAL  299 (312)
T ss_dssp             SCEEEECC-T--TSCEEEEETTTCCE---EEEECCCSSCEEEEEECSSSSEEEEEEC
T ss_pred             CcEEEEEC-C--CCEEEEEECCCchh---hhhhhccCCcEEEEeecCcCCceEEEEc
Confidence            76666544 2  34799999998886   6677777777888999999999888764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.76  E-value=6.2e-16  Score=160.08  Aligned_cols=288  Identities=12%  Similarity=0.114  Sum_probs=186.6

Q ss_pred             CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC-----------------C----Ccc
Q 039497          138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER-----------------G----GWP  196 (642)
Q Consensus       138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-----------------~----~~~  196 (642)
                      +.......+|||||++||...++             .+.+|++.+++........                 .    ..+
T Consensus        63 h~~~V~~v~fspdg~~la~g~~~-------------~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v  129 (393)
T 1erj_A           63 HTSVVCCVKFSNDGEYLATGCNK-------------TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV  129 (393)
T ss_dssp             CSSCCCEEEECTTSSEEEEECBS-------------CEEEEETTTCCEEEEECC-----------------CCCCBEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEcCC-------------cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEE
Confidence            45556778999999999986532             4778888877654332211                 0    135


Q ss_pred             eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497          197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL  276 (642)
Q Consensus       197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~  276 (642)
                      +|+|||+++++. ..++...|  +++.++.       ....+..+...+..++|+|+|++|+....++     .+.+||+
T Consensus       130 ~~s~dg~~l~s~-~~d~~i~i--wd~~~~~-------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-----~v~iwd~  194 (393)
T 1erj_A          130 CFSPDGKFLATG-AEDRLIRI--WDIENRK-------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDR-----TVRIWDL  194 (393)
T ss_dssp             EECTTSSEEEEE-ETTSCEEE--EETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----EEEEEET
T ss_pred             EECCCCCEEEEE-cCCCeEEE--EECCCCc-------EEEEEccCCCCEEEEEEcCCCCEEEEecCCC-----cEEEEEC
Confidence            899999988887 56775444  4666653       3455666766788899999999998865544     8999987


Q ss_pred             ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEecCCCcee
Q 039497          277 TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNHDFELNAG  355 (642)
Q Consensus       277 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~  355 (642)
                      ..              ++.+....                 ...          ......|+| +|+.|+..+.   ...
T Consensus       195 ~~--------------~~~~~~~~-----------------~~~----------~v~~~~~~~~~~~~l~~~s~---d~~  230 (393)
T 1erj_A          195 RT--------------GQCSLTLS-----------------IED----------GVTTVAVSPGDGKYIAAGSL---DRA  230 (393)
T ss_dssp             TT--------------TEEEEEEE-----------------CSS----------CEEEEEECSTTCCEEEEEET---TSC
T ss_pred             CC--------------CeeEEEEE-----------------cCC----------CcEEEEEECCCCCEEEEEcC---CCc
Confidence            32              11111110                 000          012347888 8888877654   356


Q ss_pred             EEEEECCCCCeeEEe---------ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC-cccc
Q 039497          356 IKIAKSDGSKRWTLI---------KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE-EIPC  425 (642)
Q Consensus       356 l~~~d~~~~~~~~l~---------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~  425 (642)
                      |.++|+.++......         ....+..+.|+|||+.|+..+.       ++.+++|++..  ......... ....
T Consensus       231 v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-------d~~v~~wd~~~--~~~~~~~~~~~~~~  301 (393)
T 1erj_A          231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-------DRSVKLWNLQN--ANNKSDSKTPNSGT  301 (393)
T ss_dssp             EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET-------TSEEEEEEC-----------------C
T ss_pred             EEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC-------CCEEEEEECCC--CCCcccccCCCCCc
Confidence            888898877654332         1345788999999999987764       78999999864  100000000 0000


Q ss_pred             ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEec------CCCEEE
Q 039497          426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP------KGDLIA  499 (642)
Q Consensus       426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp------dG~~l~  499 (642)
                      ....+..+. ..+..++|+|++++|+..+.+   ..|.+||+.+++.   +..+..+...+..++|++      +++.|+
T Consensus       302 ~~~~~~~h~-~~v~~~~~~~~~~~l~sgs~D---~~v~iwd~~~~~~---~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~  374 (393)
T 1erj_A          302 CEVTYIGHK-DFVLSVATTQNDEYILSGSKD---RGVLFWDKKSGNP---LLMLQGHRNSVISVAVANGSSLGPEYNVFA  374 (393)
T ss_dssp             EEEEEECCS-SCEEEEEECGGGCEEEEEETT---SEEEEEETTTCCE---EEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred             ceEEEeccc-CcEEEEEECCCCCEEEEEeCC---CeEEEEECCCCeE---EEEECCCCCCEEEEEecCCcCcCCCCCEEE
Confidence            122333444 567789999999999877743   4799999998886   566666666677777765      788888


Q ss_pred             EEecCCCCCCCCceeEEEEeCC
Q 039497          500 FSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       500 ~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      ..+.++.        |.+|++.
T Consensus       375 sgs~Dg~--------i~iW~~~  388 (393)
T 1erj_A          375 TGSGDCK--------ARIWKYK  388 (393)
T ss_dssp             EEETTSE--------EEEEEEE
T ss_pred             EECCCCc--------EEECccc
Confidence            7777654        7888764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.76  E-value=1.8e-15  Score=153.77  Aligned_cols=285  Identities=13%  Similarity=0.059  Sum_probs=164.7

Q ss_pred             CCceEEEEEecCCCcccccCCccceee--CCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCee
Q 039497          212 DGWWSIFRVSFPENLEFLGFPIAPTRV--TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFV  289 (642)
Q Consensus       212 ~g~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  289 (642)
                      ++...+|.++..++        ..+.+  .........++|||||+ |+++....  ....+++|++...          
T Consensus        15 ~~~i~v~~~d~~tg--------~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~--~~~~v~~~~~~~g----------   73 (347)
T 3hfq_A           15 SQGIYQGTLDTTAK--------TLTNDGLLAATQNPTYLALSAKDC-LYSVDKED--DEGGIAAWQIDGQ----------   73 (347)
T ss_dssp             CCEEEEEEEETTTT--------EEEEEEEEEECSCCCCEEECTTCE-EEEEEEET--TEEEEEEEEEETT----------
T ss_pred             CCCEEEEEEcCCCC--------eEEEeeeeeccCCcceEEEccCCe-EEEEEecC--CCceEEEEEecCC----------
Confidence            34467888888776        33332  22233456788999999 76655431  2347888887211          


Q ss_pred             cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC-CCCeeE
Q 039497          290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD-GSKRWT  368 (642)
Q Consensus       290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~-~~~~~~  368 (642)
                          + +-..                .       .+.........++|+|||++|++....+  ..|.+++++ .+....
T Consensus        74 ----~-~~~~----------------~-------~~~~~~~~p~~~a~spdg~~l~~~~~~~--~~v~v~~~~~~g~~~~  123 (347)
T 3hfq_A           74 ----T-AHKL----------------N-------TVVAPGTPPAYVAVDEARQLVYSANYHK--GTAEVMKIAADGALTL  123 (347)
T ss_dssp             ----E-EEEE----------------E-------EEEEESCCCSEEEEETTTTEEEEEETTT--TEEEEEEECTTSCEEE
T ss_pred             ----c-EEEe----------------e-------eeecCCCCCEEEEECCCCCEEEEEeCCC--CEEEEEEeCCCCCeee
Confidence                0 0000                0       0000111223568999999888876433  455556653 333333


Q ss_pred             Eee---cC----------CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE---ccc
Q 039497          369 LIK---DR----------TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI---LTK  432 (642)
Q Consensus       369 l~~---~~----------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---l~~  432 (642)
                      +..   .+          .+..+.|+|||+ ++++..      ....+.+|++..        ++     ....   +..
T Consensus       124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~------~~~~v~~~~~~~--------~g-----~~~~~~~~~~  183 (347)
T 3hfq_A          124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL------GSDKVYVYNVSD--------AG-----QLSEQSVLTM  183 (347)
T ss_dssp             EEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET------TTTEEEEEEECT--------TS-----CEEEEEEEEC
T ss_pred             cceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC------CCCEEEEEEECC--------CC-----cEEEeeeEEc
Confidence            322   11          255689999999 766663      367888898864        22     2221   122


Q ss_pred             cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC------CcccceeEecCCCEEEEEecCCC
Q 039497          433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP------WIDTMPSWSPKGDLIAFSSNRHN  506 (642)
Q Consensus       433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~------~~~~~~~~spdG~~l~~~~~~~~  506 (642)
                      ........++|+|||++|+++....+...+|.++..+|+. .....+....      .....++|||||++|++......
T Consensus       184 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~  262 (347)
T 3hfq_A          184 EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF-TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN  262 (347)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE-EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred             CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce-EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence            1212455689999999998887665544555555545653 0011222111      22456899999999887765432


Q ss_pred             CCCCCceeEEEEeCC-CCceEEeeecCC-CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497          507 PDNVEAFSLYVIKPD-GSGLRRIHVAGP-EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV  584 (642)
Q Consensus       507 ~~~~~~~~l~~~d~~-~~~~~~l~~~~~-~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  584 (642)
                             .|.+|+++ .+..+.+..... ..       .+..++|||||++|++.....+..              .||.
T Consensus       263 -------~v~v~~~~~~g~~~~~~~~~~~~~-------~~~~~~~spdg~~l~v~~~~~~~v--------------~v~~  314 (347)
T 3hfq_A          263 -------TLAVFAVTADGHLTLIQQISTEGD-------FPRDFDLDPTEAFVVVVNQNTDNA--------------TLYA  314 (347)
T ss_dssp             -------EEEEEEECGGGCEEEEEEEECSSS-------CCCEEEECTTSSEEEEEETTTTEE--------------EEEE
T ss_pred             -------EEEEEEECCCCcEEEeEEEecCCC-------CcCeEEECCCCCEEEEEEcCCCcE--------------EEEE
Confidence                   37888875 334444332211 11       356899999999998877654322              5666


Q ss_pred             EEcCCCceeecc
Q 039497          585 VKLDGSGLRRLT  596 (642)
Q Consensus       585 ~~~~~~~~~~lt  596 (642)
                      ++..+++++.+.
T Consensus       315 ~d~~tg~l~~~~  326 (347)
T 3hfq_A          315 RDLTSGKLSLLQ  326 (347)
T ss_dssp             ECTTTCCEEEEE
T ss_pred             EeCCCCeEEecc
Confidence            677777777655

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.76  E-value=1.6e-16  Score=177.85  Aligned_cols=242  Identities=14%  Similarity=0.121  Sum_probs=158.8

Q ss_pred             ccEEcCCCCEEEEEecCCCc--eeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcc-------cCCCeE
Q 039497          334 FPSFSPDGGLIVFNHDFELN--AGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQ-------SERATV  403 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~--~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~-------~~~~~~  403 (642)
                      .++|||||++|+|.....+.  ..|+++|+++++...+.. ...+..+.|||||+.|+|++......       ......
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~  208 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence            57999999999997764443  499999999998776544 33367899999999999998542100       001123


Q ss_pred             EEEEEEeecCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCeEEEEeCCCC--ceeEEEEECCC------Cccc
Q 039497          404 QIARVSFQLDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKFLVFRSGRSG--HKNLFVLDAVN------GEFN  473 (642)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~------g~~~  473 (642)
                      +||..+.  .     ++..   ....+....  ......+.|||||++|++.+.+..  ..+||++|+.+      ++. 
T Consensus       209 ~v~~~~l--~-----t~~~---~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-  277 (710)
T 2xdw_A          209 KLYYHVL--G-----TDQS---EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-  277 (710)
T ss_dssp             EEEEEET--T-----SCGG---GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-
T ss_pred             EEEEEEC--C-----CCcc---cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-
Confidence            3554444  1     1210   112332221  133457899999999999886443  56999999986      520 


Q ss_pred             cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc---eEEeeecCCCCCCCcccccccceEEc
Q 039497          474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG---LRRIHVAGPEGSGDVDRERINHVCFS  550 (642)
Q Consensus       474 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~S  550 (642)
                       ..+.|+...... ...|+|||++|+|.++...    ....|+++|++++.   .+.++......       .+..+.|+
T Consensus       278 -~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~----~~~~l~~~d~~~~~~~~~~~l~~~~~~~-------~~~~~~~~  344 (710)
T 2xdw_A          278 -KWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHS----PNYRLINIDFTDPEESKWKVLVPEHEKD-------VLEWVACV  344 (710)
T ss_dssp             -CCEEEECSSSSC-EEEEEEETTEEEEEECTTC----TTCEEEEEETTSCCGGGCEEEECCCSSC-------EEEEEEEE
T ss_pred             -ceEEeeCCCCcE-EEEEeccCCEEEEEECCCC----CCCEEEEEeCCCCCcccceeccCCCCCC-------eEEEEEEE
Confidence             136666554333 3469999999999987643    46789999998874   35665432212       35567888


Q ss_pred             CCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC-CCceeeccCCCCCCCCcEEecCCceE
Q 039497          551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD-GSGLRRLTWNGYENGTPAWHPGNQLD  614 (642)
Q Consensus       551 ~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lt~~~~~~~~~~~s~dg~~~  614 (642)
                      ++ ..|+++....+..              .||++++. ++.+++|+...+.+..++++||+..+
T Consensus       345 ~~-~~lv~~~~~~g~~--------------~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l  394 (710)
T 2xdw_A          345 RS-NFLVLCYLHDVKN--------------TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEI  394 (710)
T ss_dssp             TT-TEEEEEEEETTEE--------------EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEE
T ss_pred             cC-CEEEEEEEECCEE--------------EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEE
Confidence            54 5566666655432              89999984 44467777665555667888988554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.75  E-value=2.9e-15  Score=168.30  Aligned_cols=306  Identities=13%  Similarity=0.099  Sum_probs=190.6

Q ss_pred             ccccCCCEEEEEEeccCCCcccccccceEEEEcc---CCceEecccCC-------CccCCceeCCCCcEEEEEecCCCCC
Q 039497           95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLK---ASKFTRLTPYG-------VVDYSPSVSYSGKFIAVASYESRPW  164 (642)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~lt~~~-------~~~~~~~~SPDG~~la~~~~~~~~~  164 (642)
                      .|..+|+.++|.........     ..||+++..   +++.++|....       .....++|||||++|||..+..   
T Consensus       113 ~p~pdG~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~---  184 (741)
T 1yr2_A          113 LPQRRGASVFYSWNSGLMNQ-----SQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG---  184 (741)
T ss_dssp             CCEEETTEEEEEEECSSCSS-----CEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET---
T ss_pred             CCEEECCEEEEEEEcCCCeE-----EEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC---
Confidence            34458999999887543211     379999987   77777753321       1345689999999999998654   


Q ss_pred             CCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCC----------ceEEEEEecCCCcccccCC
Q 039497          165 PGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDG----------WWSIFRVSFPENLEFLGFP  232 (642)
Q Consensus       165 ~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g----------~~~l~~~~~~~~~~~~~~~  232 (642)
                          ......|+++++++|+..+......  ..++||||..++|++.....          ..+||.+++.++..     
T Consensus       185 ----G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-----  255 (741)
T 1yr2_A          185 ----GSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-----  255 (741)
T ss_dssp             ----TCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGG-----
T ss_pred             ----CCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCch-----
Confidence                0123689999999999776543322  46899999335555532221          45799999877631     


Q ss_pred             ccceeeCC-CC--CccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCC
Q 039497          233 IAPTRVTP-PG--VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQ  309 (642)
Q Consensus       233 ~~~~~l~~-~~--~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~  309 (642)
                       ....+.. .+  .....+.|||||++|++...+.......++++|+....            ++               
T Consensus       256 -~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~------------~~---------------  307 (741)
T 1yr2_A          256 -ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK------------IG---------------  307 (741)
T ss_dssp             -GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE------------EC---------------
T ss_pred             -hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC------------Cc---------------
Confidence             1122322 22  23556788999999998776543234567777762210            00               


Q ss_pred             cccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC-CceeEEEEECCCC--CeeEEee--cCCceeeeeecCC
Q 039497          310 STIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE-LNAGIKIAKSDGS--KRWTLIK--DRTAFYNSWSPTE  384 (642)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~l~~~d~~~~--~~~~l~~--~~~~~~~~~spdg  384 (642)
                       .          ...+. .........++|||++|+|....+ ....|++++++++  +.+.+..  ...+..+.|+  +
T Consensus       308 -~----------~~~l~-~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~  373 (741)
T 1yr2_A          308 -P----------VTALI-PDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--G  373 (741)
T ss_dssp             -C----------CEEEE-CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--B
T ss_pred             -c----------cEEec-CCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--C
Confidence             0          00000 000111123568999999987643 3678999999884  4455554  2234445555  5


Q ss_pred             CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC-CCceeEE
Q 039497          385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR-SGHKNLF  463 (642)
Q Consensus       385 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~-~g~~~l~  463 (642)
                      +.|++...      .+...+||.++.  +     ++     ..+.+.......+..+.++||++.|+|.... .....||
T Consensus       374 ~~lv~~~~------~dg~~~l~~~~~--~-----g~-----~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~  435 (741)
T 1yr2_A          374 NRLFASYI------HDAKSQVLAFDL--D-----GK-----PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVL  435 (741)
T ss_dssp             TEEEEEEE------ETTEEEEEEEET--T-----SC-----EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred             CEEEEEEE------ECCEEEEEEEeC--C-----CC-----ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence            66776653      366788888876  3     22     4566654322556778899999988876532 3356899


Q ss_pred             EEECCCCccccceeeCCC
Q 039497          464 VLDAVNGEFNGDIRQLTD  481 (642)
Q Consensus       464 ~~d~~~g~~~~~~~~l~~  481 (642)
                      ++|+.+|+.    +.+..
T Consensus       436 ~~d~~tg~~----~~l~~  449 (741)
T 1yr2_A          436 ALDPATAKT----TPWEP  449 (741)
T ss_dssp             EEETTTTEE----EECSC
T ss_pred             EEECCCCcE----EEEec
Confidence            999998873    66654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.75  E-value=1.1e-15  Score=152.16  Aligned_cols=278  Identities=10%  Similarity=-0.005  Sum_probs=187.5

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceE
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHL  315 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~  315 (642)
                      ..+..+...+..++|||||++|+....++     .+.+||+...              +.+...                
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg-----~v~lWd~~~~--------------~~~~~~----------------   51 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSG-----RVELWNYETQ--------------VEVRSI----------------   51 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTT--------------EEEEEE----------------
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCC-----cEEEEECCCC--------------ceeEEe----------------
Confidence            34555555688899999999998865444     8899987321              111000                


Q ss_pred             eeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcC
Q 039497          316 EPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTG  393 (642)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~  393 (642)
                         .....       ......|+|++++|+..+.   ...|.++|+.+++......  ...+..+.|+|+++.|+..+. 
T Consensus        52 ---~~~~~-------~v~~~~~~~~~~~l~s~s~---d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-  117 (304)
T 2ynn_A           52 ---QVTET-------PVRAGKFIARKNWIIVGSD---DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-  117 (304)
T ss_dssp             ---ECCSS-------CEEEEEEEGGGTEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET-
T ss_pred             ---eccCC-------cEEEEEEeCCCCEEEEECC---CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECC-
Confidence               00000       1124478999998888664   3678889998877544433  567889999999999887764 


Q ss_pred             CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC-CCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497          394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~  472 (642)
                            ++.+++|++..        +. .   ....+..+. ..+..++|+| |++.|+..+.   +..|.+||+.+++.
T Consensus       118 ------D~~v~lWd~~~--------~~-~---~~~~~~~h~-~~v~~v~~~p~~~~~l~sgs~---D~~v~iwd~~~~~~  175 (304)
T 2ynn_A          118 ------DLTVKLWNWEN--------NW-A---LEQTFEGHE-HFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTP  175 (304)
T ss_dssp             ------TSCEEEEEGGG--------TT-E---EEEEECCCC-SCEEEEEECTTCTTEEEEEET---TSEEEEEETTCSSC
T ss_pred             ------CCeEEEEECCC--------Cc-c---hhhhhcccC-CcEEEEEECCCCCCEEEEEeC---CCeEEEEECCCCCc
Confidence                  78999999865        21 0   233444454 6788899999 5677776663   33799999977654


Q ss_pred             ccceeeCCC-CCCcccceeEec--CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE
Q 039497          473 NGDIRQLTD-GPWIDTMPSWSP--KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF  549 (642)
Q Consensus       473 ~~~~~~l~~-~~~~~~~~~~sp--dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  549 (642)
                         ...+.. ....+....|+|  ++++|+..+.++.        |.+||+.+++...... ++..       .+..+.|
T Consensus       176 ---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~--------i~iWd~~~~~~~~~~~-~h~~-------~v~~~~~  236 (304)
T 2ynn_A          176 ---NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT--------IKIWDYQTKSCVATLE-GHMS-------NVSFAVF  236 (304)
T ss_dssp             ---SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE--------EEEEETTTTEEEEEEE-CCSS-------CEEEEEE
T ss_pred             ---cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe--------EEEEeCCCCccceeeC-CCCC-------CEEEEEE
Confidence               333332 334455667765  7888888877654        9999998876544333 4444       5778999


Q ss_pred             cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCc--eEEeecCC
Q 039497          550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQ--LDLGKLRL  620 (642)
Q Consensus       550 S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~--~~~~~~~~  620 (642)
                      +|+++.|+..+.++                 .|.+||..+++ ...+..+...+..++|+|++.  ++++....
T Consensus       237 ~p~~~~l~s~s~Dg-----------------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~  293 (304)
T 2ynn_A          237 HPTLPIIISGSEDG-----------------TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN  293 (304)
T ss_dssp             CSSSSEEEEEETTS-----------------CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT
T ss_pred             CCCCCEEEEEcCCC-----------------eEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC
Confidence            99999888777654                 68888988766 445555555566889999874  45554433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.75  E-value=1.1e-15  Score=154.64  Aligned_cols=310  Identities=11%  Similarity=0.091  Sum_probs=178.4

Q ss_pred             eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCC
Q 039497          203 TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNF  282 (642)
Q Consensus       203 ~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~  282 (642)
                      .++|+....++...+|.++. ++..      ..............++|+|||++|+++....    ..+.+|++...   
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~----~~v~~~~~~~~---   70 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNH-EGAL------TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE----FRVLAYRIAPD---   70 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECT-TSCE------EEEEEEECSSCCCCEEECTTSSEEEEEETTT----TEEEEEEECTT---
T ss_pred             EEEEEeCCCCCeEEEEEECC-CCcE------EEeeeEecCCCCceEEECCCCCEEEEeecCC----CeEEEEEecCC---
Confidence            45555545567556665543 3310      1122223344566789999999988865442    37778876311   


Q ss_pred             cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC
Q 039497          283 HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD  362 (642)
Q Consensus       283 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~  362 (642)
                               .|+.....                 .+.        .......+.|+|||++|++....  ...|.+++++
T Consensus        71 ---------~~~~~~~~-----------------~~~--------~~~~~~~~~~s~dg~~l~~~~~~--~~~i~~~d~~  114 (343)
T 1ri6_A           71 ---------DGALTFAA-----------------ESA--------LPGSLTHISTDHQGQFVFVGSYN--AGNVSVTRLE  114 (343)
T ss_dssp             ---------TCCEEEEE-----------------EEE--------CSSCCSEEEECTTSSEEEEEETT--TTEEEEEEEE
T ss_pred             ---------CCceeecc-----------------ccc--------cCCCCcEEEEcCCCCEEEEEecC--CCeEEEEECC
Confidence                     11110000                 000        00122356899999988887643  3456666663


Q ss_pred             CCCe---eEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE-----Ecccc
Q 039497          363 GSKR---WTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK-----ILTKE  433 (642)
Q Consensus       363 ~~~~---~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~  433 (642)
                      .+..   ..... ...+..+.|+|||+.|++...      .+..+.+|++..  +      +     ...     .+...
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~--~------~-----~~~~~~~~~~~~~  175 (343)
T 1ri6_A          115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL------KQDRICLFTVSD--D------G-----HLVAQDPAEVTTV  175 (343)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG------GGTEEEEEEECT--T------S-----CEEEEEEEEEECS
T ss_pred             CCccccccccccCCCCceEEEECCCCCEEEEecC------CCCEEEEEEecC--C------C-----ceeeecccccccC
Confidence            2221   12222 445778999999999988763      367888888854  2      2     222     22222


Q ss_pred             CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--CCccccceeeC---CCC---CCcccceeEecCCCEEEEEecCC
Q 039497          434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NGEFNGDIRQL---TDG---PWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       434 ~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~~~~~~~l---~~~---~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      .......+.|+|||++|++....++  .|.+|+++  +|+. .....+   ...   ......++|+|||++|++.....
T Consensus       176 ~~~~~~~~~~~pdg~~l~~~~~~~~--~i~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~  252 (343)
T 1ri6_A          176 EGAGPRHMVFHPNEQYAYCVNELNS--SVDVWELKDPHGNI-ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA  252 (343)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTT--EEEEEESSCTTSCC-EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCCCcceEEECCCCCEEEEEeCCCC--EEEEEEecCCCCcE-EEEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence            2134556899999999988875443  68888874  3542 001111   111   11233589999999988776433


Q ss_pred             CCCCCCceeEEEEeCC--CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497          506 NPDNVEAFSLYVIKPD--GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY  583 (642)
Q Consensus       506 ~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  583 (642)
                             ..|++|+++  ++..+.+.......       .+..++|+|||++|++.....+..              .||
T Consensus       253 -------~~i~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~~~~v--------------~v~  304 (343)
T 1ri6_A          253 -------SLITVFSVSEDGSVLSKEGFQPTET-------QPRGFNVDHSGKYLIAAGQKSHHI--------------SVY  304 (343)
T ss_dssp             -------TEEEEEEECTTSCCEEEEEEEECSS-------SCCCEEECTTSSEEEEECTTTCEE--------------EEE
T ss_pred             -------CEEEEEEEcCCCCceEEeeeecCCC-------ccceEEECCCCCEEEEecCCCCeE--------------EEE
Confidence                   248888887  55555443322222       356799999999998887543321              566


Q ss_pred             EEEcCCCceeeccC--CCCCCCCcEEecCCc
Q 039497          584 VVKLDGSGLRRLTW--NGYENGTPAWHPGNQ  612 (642)
Q Consensus       584 ~~~~~~~~~~~lt~--~~~~~~~~~~s~dg~  612 (642)
                      .++..++.++++..  .+.....++|.++.+
T Consensus       305 ~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          305 EIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred             EEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence            66777776655543  123456777777653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.75  E-value=7.6e-16  Score=158.62  Aligned_cols=299  Identities=13%  Similarity=0.081  Sum_probs=191.4

Q ss_pred             EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEe
Q 039497          133 TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQ  209 (642)
Q Consensus       133 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~  209 (642)
                      +.|..+.......+|||||++||..+.+.            .|.+|++.+++.......+.   ...+|+|||+++++. 
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~------------~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~-  126 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDG------------RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG-  126 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTS------------EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC-
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCC------------eEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe-
Confidence            44566666677889999999999988766            79999998887655444333   246999999988887 


Q ss_pred             cCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCc-EEEEEEeccCCceeeEEEEEeecCCCCcccCCe
Q 039497          210 ADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK-RLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPF  288 (642)
Q Consensus       210 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~-~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  288 (642)
                      ..++...||.+.......  ........+..+...+....|+|++. .|+....     ...+.+||+...         
T Consensus       127 ~~d~~v~iw~~~~~~~~~--~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~-----D~~i~~wd~~~~---------  190 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRD--GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG-----DQTCVLWDVTTG---------  190 (380)
T ss_dssp             CSSSCCEEEECCCCSSCC--CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT-----TSCEEEECTTTC---------
T ss_pred             eCCCcEEEEECCCCcccc--CCccceeeccCCCcceEEEEEecCCCCEEEEECC-----CCcEEEEEcCCC---------
Confidence            667877888765321100  00001233455655677788888754 4555333     348999998332         


Q ss_pred             ecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEecCCCceeEEEEECCC-CCe
Q 039497          289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNHDFELNAGIKIAKSDG-SKR  366 (642)
Q Consensus       289 ~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~-~~~  366 (642)
                           +.+.......              ..+....+       ....|++ +++.|+..+.   ...|.++|+.. +..
T Consensus       191 -----~~~~~~~~~~--------------~~~h~~~v-------~~~~~~~~~~~~l~sgs~---D~~v~~wd~~~~~~~  241 (380)
T 3iz6_a          191 -----QRISIFGSEF--------------PSGHTADV-------LSLSINSLNANMFISGSC---DTTVRLWDLRITSRA  241 (380)
T ss_dssp             -----CEEEEECCCS--------------SSSCCSCE-------EEEEECSSSCCEEEEEET---TSCEEEEETTTTCCC
T ss_pred             -----cEEEEeeccc--------------CCCCccCe-------EEEEeecCCCCEEEEEEC---CCeEEEEECCCCCcc
Confidence                 1111110000              00000000       1235655 7777766554   35678888863 333


Q ss_pred             eEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC------CCCc
Q 039497          367 WTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE------TGNN  438 (642)
Q Consensus       367 ~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~  438 (642)
                      .....  ...+..+.|+|||+.|+..+.       ++.+++|++..        +.     ....+....      ...+
T Consensus       242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~-------D~~i~lwd~~~--------~~-----~~~~~~~~~~~~~~~~~~v  301 (380)
T 3iz6_a          242 VRTYHGHEGDINSVKFFPDGQRFGTGSD-------DGTCRLFDMRT--------GH-----QLQVYNREPDRNDNELPIV  301 (380)
T ss_dssp             CEEECCCSSCCCEEEECTTSSEEEEECS-------SSCEEEEETTT--------TE-----EEEEECCCCSSSCCSSCSC
T ss_pred             eEEECCcCCCeEEEEEecCCCeEEEEcC-------CCeEEEEECCC--------Cc-----EEEEecccccccccccCce
Confidence            33322  567889999999999887763       78999999854        11     222222211      0135


Q ss_pred             cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC----CCCCCcccceeEecCCCEEEEEecCCCCCCCCcee
Q 039497          439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL----TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS  514 (642)
Q Consensus       439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l----~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~  514 (642)
                      ..++|||+|++|+..+.   ...|++||+.+++.   ...+    ..+...+..++|+|||++|+..+.++.        
T Consensus       302 ~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~--------  367 (380)
T 3iz6_a          302 TSVAFSISGRLLFAGYS---NGDCYVWDTLLAEM---VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN--------  367 (380)
T ss_dssp             SEEEECSSSSEEEEECT---TSCEEEEETTTCCE---EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC--------
T ss_pred             EEEEECCCCCEEEEEEC---CCCEEEEECCCCce---EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC--------
Confidence            67899999999887653   34799999988775   3444    345566788999999999988887765        


Q ss_pred             EEEEeCCCC
Q 039497          515 LYVIKPDGS  523 (642)
Q Consensus       515 l~~~d~~~~  523 (642)
                      |.+|++.+.
T Consensus       368 i~iW~~~~~  376 (380)
T 3iz6_a          368 LKIWAFSGH  376 (380)
T ss_dssp             EEEEECCSS
T ss_pred             EEEEecCCC
Confidence            999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.75  E-value=3.3e-15  Score=160.64  Aligned_cols=326  Identities=13%  Similarity=0.075  Sum_probs=197.7

Q ss_pred             ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEe--cCCCceeEeecCC--Ccc
Q 039497          121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQE--SDPNKRVIVCERG--GWP  196 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~l~~~~~--~~~  196 (642)
                      .|.+++..+++..............+|||||++|+....+.            .|.+|++  .+++.........  ..+
T Consensus       160 ~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~------------~V~v~D~~~~t~~~~~~i~~g~~p~~v  227 (543)
T 1nir_A          160 QIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDA------------RIDMIDLWAKEPTKVAEIKIGIEARSV  227 (543)
T ss_dssp             EEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTS------------EEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             eEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCC------------eEEEEECcCCCCcEEEEEecCCCcceE
Confidence            57777988887654332222244578999999999887544            7999999  6655433222211  245


Q ss_pred             eEee----CCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-----------CCccccceeecCCcEEEEEE
Q 039497          197 TWSG----DSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-----------GVHCFTPAAFHDGKRLAVAT  261 (642)
Q Consensus       197 ~wsp----dg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~SpdG~~l~~~~  261 (642)
                      +|+|    ||+.+|+.+..++  .|..+|..+++       ....+...           +..+..+.+||+++.+++..
T Consensus       228 a~sp~~~~dg~~l~v~~~~~~--~v~v~D~~t~~-------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          228 ESSKFKGYEDRYTIAGAYWPP--QFAIMDGETLE-------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             EECCSTTCTTTEEEEEEEESS--EEEEEETTTCC-------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             EeCCCcCCCCCEEEEEEccCC--eEEEEeccccc-------cceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence            8999    9988888754456  45566776663       22333221           11344567788888777654


Q ss_pred             eccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCC
Q 039497          262 RRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDG  341 (642)
Q Consensus       262 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  341 (642)
                      ...    ..|+++|+.....              +                 ...       .+. .........|+|||
T Consensus       299 ~~~----g~i~vvd~~~~~~--------------l-----------------~~~-------~i~-~~~~~~~~~~spdg  335 (543)
T 1nir_A          299 KET----GKVLLVNYKDIDN--------------L-----------------TVT-------SIG-AAPFLHDGGWDSSH  335 (543)
T ss_dssp             TTT----TEEEEEECTTSSS--------------C-----------------EEE-------EEE-CCSSCCCEEECTTS
T ss_pred             CCC----CeEEEEEecCCCc--------------c-----------------eeE-------Eec-cCcCccCceECCCC
Confidence            322    3677777621110              0                 000       000 00111356899999


Q ss_pred             CEEEEEecCCCceeEEEEECCCCCeeEEeecC----Cceeee-eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC
Q 039497          342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR----TAFYNS-WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD  416 (642)
Q Consensus       342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~----~~~~~~-~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  416 (642)
                      ++++....  ....|.++|+++++.......+    ...... ++|++..++++..     ..+..+.+|+++.  .+..
T Consensus       336 ~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~-----~~d~~V~v~d~~~--~~~~  406 (543)
T 1nir_A          336 RYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH-----LGDGSISLIGTDP--KNHP  406 (543)
T ss_dssp             CEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEB-----SSSSEEEEEECCT--TTCT
T ss_pred             CEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEecc-----CCCceEEEEEeCC--CCCc
Confidence            98766553  3457888999988766544411    111233 4788777766653     2367888888865  1000


Q ss_pred             CCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC----CceeEEEEECCCCccccce-eeC--------CCCC
Q 039497          417 DNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS----GHKNLFVLDAVNGEFNGDI-RQL--------TDGP  483 (642)
Q Consensus       417 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~----g~~~l~~~d~~~g~~~~~~-~~l--------~~~~  483 (642)
                      .... +   ..+.+..+. .....+.+||||++|+..+.-+    ....|.+||+++++.   . +.|        ..+.
T Consensus       407 ~~~~-~---~v~~l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~---~~~~~~v~~~~~~~~~~  478 (543)
T 1nir_A          407 QYAW-K---KVAELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA---KYQVLPIAEWADLGEGA  478 (543)
T ss_dssp             TTBT-S---EEEEEECSC-SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS---CCEEECHHHHHCCCSSC
T ss_pred             hhcC-e---EEEEEEcCC-CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC---CeEEeechhhcccCCCC
Confidence            0001 1   445555544 4556789999999998765211    134899999998885   3 332        3444


Q ss_pred             CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      ..+.++.|+|||+.|+++.....   .....|.+||.+++++.....
T Consensus       479 ~~~~~~~~~~~g~~~~~s~~~~~---~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          479 KRVVQPEYNKRGDEVWFSVWNGK---NDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             CEEEEEEECSSSSEEEEEEECCT---TSCCEEEEEETTTTEEEEEEC
T ss_pred             CceEeccCCCCCCEEEEEeecCC---CCCCeEEEEECCCceEEEeec
Confidence            56778999999999998854221   023569999999988766554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.75  E-value=8e-16  Score=158.47  Aligned_cols=283  Identities=14%  Similarity=0.095  Sum_probs=188.8

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee--------cCCCCcccCCeecCCCCEEEEEEeecCCCC
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT--------LNPNFHHYNPFVSANSEFIGYHRFRGESTE  307 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~  307 (642)
                      ..+..+...+..++|+|||++|+....++     .+.+||+.        ..+...+...+|+|||+.|+....++.   
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~---  131 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDG-----RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA---  131 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSC---
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCc---
Confidence            44566666788899999999999866554     89999982        234556778899999999887654443   


Q ss_pred             CCcccceEeeccC----CCcee-EEe--eeCCCccEEcCCCC-EEEEEecCCCceeEEEEECCCCCeeEEee-------c
Q 039497          308 GQSTIPHLEPVAS----PVKEL-RML--RLNGSFPSFSPDGG-LIVFNHDFELNAGIKIAKSDGSKRWTLIK-------D  372 (642)
Q Consensus       308 ~~~~~~~~~~~~~----~~~~~-~~~--~~~~~~~~~spdg~-~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~  372 (642)
                         ..+|-.....    ..... .+.  ........|+|++. +|+..+   ....|.++|+.+++......       .
T Consensus       132 ---v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s---~D~~i~~wd~~~~~~~~~~~~~~~~~h~  205 (380)
T 3iz6_a          132 ---CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS---GDQTCVLWDVTTGQRISIFGSEFPSGHT  205 (380)
T ss_dssp             ---CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC---TTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred             ---EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEEC---CCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence               2333221100    00000 011  11123457888754 454433   34678888998887655431       3


Q ss_pred             CCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          373 RTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       373 ~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      ..+..+.|+| +++.|+..+.       ++.+++|++..  .     ..     ....+..+. ..+..+.|+|||++|+
T Consensus       206 ~~v~~~~~~~~~~~~l~sgs~-------D~~v~~wd~~~--~-----~~-----~~~~~~~h~-~~v~~v~~~p~~~~l~  265 (380)
T 3iz6_a          206 ADVLSLSINSLNANMFISGSC-------DTTVRLWDLRI--T-----SR-----AVRTYHGHE-GDINSVKFFPDGQRFG  265 (380)
T ss_dssp             SCEEEEEECSSSCCEEEEEET-------TSCEEEEETTT--T-----CC-----CCEEECCCS-SCCCEEEECTTSSEEE
T ss_pred             cCeEEEEeecCCCCEEEEEEC-------CCeEEEEECCC--C-----Cc-----ceEEECCcC-CCeEEEEEecCCCeEE
Confidence            3466778876 7777777663       78999999864  1     11     455566565 7788899999999988


Q ss_pred             EEeCCCCceeEEEEECCCCccccceeeCCCCC-------CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-------WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG  524 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-------~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~  524 (642)
                      ..+.   +..|.+||+.+++.   +..+....       ..+..++|+|+|++|+..+.++.        |++||+..++
T Consensus       266 s~s~---D~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~--------i~vwd~~~~~  331 (380)
T 3iz6_a          266 TGSD---DGTCRLFDMRTGHQ---LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD--------CYVWDTLLAE  331 (380)
T ss_dssp             EECS---SSCEEEEETTTTEE---EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC--------EEEEETTTCC
T ss_pred             EEcC---CCeEEEEECCCCcE---EEEecccccccccccCceEEEEECCCCCEEEEEECCCC--------EEEEECCCCc
Confidence            7763   34799999998875   34333221       12567899999999888777654        9999997766


Q ss_pred             eEEeee---cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          525 LRRIHV---AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       525 ~~~l~~---~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                      ......   .++.+       .+..++|||||+.|+..+.++                 .|.+|++.+.
T Consensus       332 ~~~~~~~~~~~h~~-------~v~~l~~s~dg~~l~sgs~D~-----------------~i~iW~~~~~  376 (380)
T 3iz6_a          332 MVLNLGTLQNSHEG-------RISCLGLSSDGSALCTGSWDK-----------------NLKIWAFSGH  376 (380)
T ss_dssp             EEEEECCSCSSCCC-------CCCEEEECSSSSEEEEECTTS-----------------CEEEEECCSS
T ss_pred             eEEEEecccCCCCC-------ceEEEEECCCCCEEEEeeCCC-----------------CEEEEecCCC
Confidence            543221   23444       678899999999988877665                 6777787764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.75  E-value=1.1e-15  Score=152.68  Aligned_cols=267  Identities=14%  Similarity=0.109  Sum_probs=179.5

Q ss_pred             eeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee--------cCCCCcccCCeecCCCCEEEEEEeecCCCCC
Q 039497          237 RVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT--------LNPNFHHYNPFVSANSEFIGYHRFRGESTEG  308 (642)
Q Consensus       237 ~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~  308 (642)
                      .+..+...+..++|+|||++|+....++     .+.+|++.        ..+...+....|+|||+.|+....++.    
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~----   88 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT----   88 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE----
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCC-----eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE----
Confidence            4455656788899999999998865544     78899872        244556677899999999988765443    


Q ss_pred             CcccceEeeccCCCceeEEeeeC--CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCC
Q 039497          309 QSTIPHLEPVASPVKELRMLRLN--GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTE  384 (642)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg  384 (642)
                        ..+|  .+........+....  .....|+|+++.|+....   ...|.++|+..++......  ...+..+.|+|++
T Consensus        89 --i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (312)
T 4ery_A           89 --LKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG  161 (312)
T ss_dssp             --EEEE--ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET---TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             --EEEE--ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC
Confidence              2233  222221111111111  135689999998887654   3578889998876544433  4568889999999


Q ss_pred             CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEE
Q 039497          385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV  464 (642)
Q Consensus       385 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~  464 (642)
                      +.|+..+.       ++.+++|++..        +.     ....+.......+..+.|+|+|++|+..+..   ..|.+
T Consensus       162 ~~l~~~~~-------d~~i~~wd~~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i  218 (312)
T 4ery_A          162 SLIVSSSY-------DGLCRIWDTAS--------GQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKL  218 (312)
T ss_dssp             SEEEEEET-------TSCEEEEETTT--------CC-----EEEEECCSSCCCEEEEEECTTSSEEEEEETT---TEEEE
T ss_pred             CEEEEEeC-------CCcEEEEECCC--------Cc-----eeeEEeccCCCceEEEEECCCCCEEEEEcCC---CeEEE
Confidence            98888774       67899998754        22     3334433332456678999999999887743   38999


Q ss_pred             EECCCCccccceeeCCCCCCcc--cceeEe-cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccc
Q 039497          465 LDAVNGEFNGDIRQLTDGPWID--TMPSWS-PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDR  541 (642)
Q Consensus       465 ~d~~~g~~~~~~~~l~~~~~~~--~~~~~s-pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~  541 (642)
                      ||+.+++.   +..+..+....  ....++ +++++|+..+.++.        |++||+.+++...... ++..      
T Consensus       219 wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~--------i~vwd~~~~~~~~~~~-~h~~------  280 (312)
T 4ery_A          219 WDYSKGKC---LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL--------VYIWNLQTKEIVQKLQ-GHTD------  280 (312)
T ss_dssp             EETTTTEE---EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC--------EEEEETTTCCEEEEEC-CCSS------
T ss_pred             EECCCCcE---EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE--------EEEEECCCchhhhhhh-ccCC------
Confidence            99998875   45554433222  223454 56777776665554        9999998877654433 3344      


Q ss_pred             ccccceEEcCCCCEEEEEEe
Q 039497          542 ERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       542 ~~~~~~~~S~Dg~~l~~~~~  561 (642)
                       .+..++|+|++..|+..+.
T Consensus       281 -~v~~~~~~p~~~~l~s~~~  299 (312)
T 4ery_A          281 -VVISTACHPTENIIASAAL  299 (312)
T ss_dssp             -CEEEEEECSSSSEEEEEEC
T ss_pred             -cEEEEeecCcCCceEEEEc
Confidence             5778999999998887763

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.75  E-value=4.3e-16  Score=156.34  Aligned_cols=275  Identities=14%  Similarity=0.068  Sum_probs=177.6

Q ss_pred             eeeCCCCCccccceeecCC-cEEEEEEeccCCceeeEEEEEee-------------cCCCCcccCCeecCCCCEEEEEEe
Q 039497          236 TRVTPPGVHCFTPAAFHDG-KRLAVATRRKNRNFRHIEIYDLT-------------LNPNFHHYNPFVSANSEFIGYHRF  301 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG-~~l~~~~~~~~~~~~~i~~~d~~-------------~~~~~~~~~~~~spDg~~l~~~~~  301 (642)
                      ..+..+...+..++|+|++ +.|+....++     .+.+|++.             .++...+....|+|||+.|+....
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~-----~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDK-----TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCc-----cEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            3456676678888999976 6677655444     88899873             234555667789999999988765


Q ss_pred             ecCCCCCCcccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceee
Q 039497          302 RGESTEGQSTIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYN  378 (642)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~  378 (642)
                      ++.      ..+|  .+........+...  ......|+|+++.|+..+.   ...|.++++.+.....+.. ...+..+
T Consensus        86 D~~------v~~w--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~vwd~~~~~~~~~~~h~~~v~~~  154 (319)
T 3frx_A           86 DKT------LRLW--DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR---DKTIKVWTIKGQCLATLLGHNDWVSQV  154 (319)
T ss_dssp             TSE------EEEE--ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET---TSCEEEEETTSCEEEEECCCSSCEEEE
T ss_pred             CCE------EEEE--ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEeccCCcEEEE
Confidence            544      3333  22222111111111  1245689999998887654   3567778887655444433 5567788


Q ss_pred             eeecCC------CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497          379 SWSPTE------KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       379 ~~spdg------~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      .|+|++      ..|+..+       .++.+++|++..        ..     ....+..+. ..+..++|+|||++|+.
T Consensus       155 ~~~~~~~~~~~~~~l~s~~-------~d~~i~~wd~~~--------~~-----~~~~~~~h~-~~v~~~~~sp~g~~l~s  213 (319)
T 3frx_A          155 RVVPNEKADDDSVTIISAG-------NDKMVKAWNLNQ--------FQ-----IEADFIGHN-SNINTLTASPDGTLIAS  213 (319)
T ss_dssp             EECCC------CCEEEEEE-------TTSCEEEEETTT--------TE-----EEEEECCCC-SCEEEEEECTTSSEEEE
T ss_pred             EEccCCCCCCCccEEEEEe-------CCCEEEEEECCc--------ch-----hheeecCCC-CcEEEEEEcCCCCEEEE
Confidence            898854      3566555       378899999854        11     334445554 67888999999999987


Q ss_pred             EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497          453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG  532 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  532 (642)
                      .+.   +..|.+||+.+++.   +..+.. ...+..++|+|||.+|+.....+         +.+|+++...........
T Consensus       214 ~~~---dg~i~iwd~~~~~~---~~~~~~-~~~v~~~~~sp~~~~la~~~~~~---------i~v~~~~~~~~~~~~~~~  277 (319)
T 3frx_A          214 AGK---DGEIMLWNLAAKKA---MYTLSA-QDEVFSLAFSPNRYWLAAATATG---------IKVFSLDPQYLVDDLRPE  277 (319)
T ss_dssp             EET---TCEEEEEETTTTEE---EEEEEC-CSCEEEEEECSSSSEEEEEETTE---------EEEEEETTEEEEEEECCC
T ss_pred             EeC---CCeEEEEECCCCcE---EEEecC-CCcEEEEEEcCCCCEEEEEcCCC---------cEEEEeCcCeeeeccCcc
Confidence            774   34899999998875   455543 34677889999999988776543         788888765433222111


Q ss_pred             CCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          533 PEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      ...........+..++|||||++|+..+.++
T Consensus       278 ~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          278 FAGYSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             CTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence            1110000011456789999999998887765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.74  E-value=6.2e-16  Score=173.72  Aligned_cols=300  Identities=12%  Similarity=0.093  Sum_probs=195.1

Q ss_pred             ceEeeCC-eEEEEEecCCC-ceEEEEEecC---CCcccccCCccceeeCCCC-------CccccceeecCCcEEEEEEec
Q 039497          196 PTWSGDS-TIYFHRQADDG-WWSIFRVSFP---ENLEFLGFPIAPTRVTPPG-------VHCFTPAAFHDGKRLAVATRR  263 (642)
Q Consensus       196 ~~wspdg-~~~~~~~~~~g-~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~-------~~~~~~~~SpdG~~l~~~~~~  263 (642)
                      +..+||| +++|+...... ...||+.+..   ++        ..+.+....       ..+..++|||||++|+|...+
T Consensus       112 ~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~  183 (741)
T 1yr2_A          112 GLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGT--------KGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQD  183 (741)
T ss_dssp             CCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTC--------CCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEE
T ss_pred             CCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCC--------CCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcC
Confidence            4556999 56666643222 4689999876   55        445543221       245678999999999999888


Q ss_pred             cCCceeeEEEEEeecCCC-------CcccCCeecCCCCEEEEEEeecCCC------CCCcccceEeeccCCCce-eEEee
Q 039497          264 KNRNFRHIEIYDLTLNPN-------FHHYNPFVSANSEFIGYHRFRGEST------EGQSTIPHLEPVASPVKE-LRMLR  329 (642)
Q Consensus       264 ~~~~~~~i~~~d~~~~~~-------~~~~~~~~spDg~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~  329 (642)
                      .+.....|+++|+..+..       .....++|||| +.|+|.+.+....      .+....+++..+...... ..+..
T Consensus       184 ~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~  262 (741)
T 1yr2_A          184 GGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA  262 (741)
T ss_dssp             TTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred             CCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence            777778899999944321       11257899999 9999997654310      011234556665443321 11222


Q ss_pred             eCC-----CccEEcCCCCEEEEEecCC--CceeEEEEECCCC--C-eeEEeec-CCceeeeeecCCCEEEEEEcCCCccc
Q 039497          330 LNG-----SFPSFSPDGGLIVFNHDFE--LNAGIKIAKSDGS--K-RWTLIKD-RTAFYNSWSPTEKHVIYTSTGPIFQS  398 (642)
Q Consensus       330 ~~~-----~~~~~spdg~~l~~~~~~~--~~~~l~~~d~~~~--~-~~~l~~~-~~~~~~~~spdg~~l~~~~~~~~~~~  398 (642)
                      ...     ..+.|||||++|++.....  ....||++|++++  + .+.+... .....+ ++|||+.|++.++.     
T Consensus       263 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~-----  336 (741)
T 1yr2_A          263 TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGD-----  336 (741)
T ss_dssp             CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECT-----
T ss_pred             cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECC-----
Confidence            211     3568999999999977543  4679999999887  5 6666652 233334 56999999999863     


Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497          399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ  478 (642)
Q Consensus       399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~  478 (642)
                      +....+|+.++.  +     ++..   ..+.+..+....+..+.|+  +++|++...+++..+||+++++++.    .+.
T Consensus       337 ~~~~~~l~~~d~--~-----~~~~---~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~----~~~  400 (741)
T 1yr2_A          337 GAPLKKIVRVDL--S-----GSTP---RFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKP----AGA  400 (741)
T ss_dssp             TCTTCEEEEEEC--S-----SSSC---EEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCE----EEE
T ss_pred             CCCCCEEEEEeC--C-----CCcc---ccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCc----eee
Confidence            223455666665  2     1100   3455544432333344555  6688888877888899999986444    466


Q ss_pred             CCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          479 LTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       479 l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      +.. ....+..+.++|||+.|+|......    ....||++|+.+++.+.+..
T Consensus       401 l~~~~~~~v~~~~~s~d~~~l~~~~ss~~----~P~~i~~~d~~tg~~~~l~~  449 (741)
T 1yr2_A          401 VSLPGIGSASGLSGRPGDRHAYLSFSSFT----QPATVLALDPATAKTTPWEP  449 (741)
T ss_dssp             CBCSSSCEEEEEECCBTCSCEEEEEEETT----EEEEEEEEETTTTEEEECSC
T ss_pred             ccCCCCeEEEEeecCCCCCEEEEEEcCCC----CCCEEEEEECCCCcEEEEec
Confidence            653 2455677889999998888766543    56789999999888665543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.74  E-value=1.7e-15  Score=156.82  Aligned_cols=225  Identities=16%  Similarity=0.141  Sum_probs=158.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+.|+|||++|+..+.   ...|.++|+.+++......  ...+..+.|+|+++.|+..+.       ++.+++|++.. 
T Consensus       128 ~v~~s~dg~~l~s~~~---d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-------d~~v~iwd~~~-  196 (393)
T 1erj_A          128 SVCFSPDGKFLATGAE---DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-------DRTVRIWDLRT-  196 (393)
T ss_dssp             EEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEEEEETTT-
T ss_pred             EEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-------CCcEEEEECCC-
Confidence            5689999999888654   3678888998877554443  556889999999999988764       78999998754 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeC-------CCCC
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL-------TDGP  483 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l-------~~~~  483 (642)
                             +.     ....+. .. ..+..+.|+| ||++|+..+.+   ..|.+||+.+++.   +..+       ..+.
T Consensus       197 -------~~-----~~~~~~-~~-~~v~~~~~~~~~~~~l~~~s~d---~~v~iwd~~~~~~---~~~~~~~~~~~~~h~  256 (393)
T 1erj_A          197 -------GQ-----CSLTLS-IE-DGVTTVAVSPGDGKYIAAGSLD---RAVRVWDSETGFL---VERLDSENESGTGHK  256 (393)
T ss_dssp             -------TE-----EEEEEE-CS-SCEEEEEECSTTCCEEEEEETT---SCEEEEETTTCCE---EEEEC------CCCS
T ss_pred             -------Ce-----eEEEEE-cC-CCcEEEEEECCCCCEEEEEcCC---CcEEEEECCCCcE---EEeecccccCCCCCC
Confidence                   11     223333 22 4567789999 89888877643   3789999998875   4444       2344


Q ss_pred             CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-----------EeeecCCCCCCCcccccccceEEcCC
Q 039497          484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-----------RIHVAGPEGSGDVDRERINHVCFSAD  552 (642)
Q Consensus       484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~S~D  552 (642)
                      ..+..++|+|||++|+..+.++.        |.+||+......           ..+..++..       .+..+.|+++
T Consensus       257 ~~v~~v~~~~~g~~l~s~s~d~~--------v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~  321 (393)
T 1erj_A          257 DSVYSVVFTRDGQSVVSGSLDRS--------VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-------FVLSVATTQN  321 (393)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSE--------EEEEEC---------------CEEEEEECCSS-------CEEEEEECGG
T ss_pred             CCEEEEEECCCCCEEEEEeCCCE--------EEEEECCCCCCcccccCCCCCcceEEEecccC-------cEEEEEECCC
Confidence            56778899999999988877654        899998754221           111123333       5678999999


Q ss_pred             CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEec------CCceEEeecCCC
Q 039497          553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHP------GNQLDLGKLRLE  621 (642)
Q Consensus       553 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~------dg~~~~~~~~~~  621 (642)
                      +++|+..+.++                 .|.+||+..+. +..+..+...+..++|++      ++++|++....+
T Consensus       322 ~~~l~sgs~D~-----------------~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg  380 (393)
T 1erj_A          322 DEYILSGSKDR-----------------GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  380 (393)
T ss_dssp             GCEEEEEETTS-----------------EEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             CCEEEEEeCCC-----------------eEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence            99988777654                 78889988766 445566666667777765      678888765544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.73  E-value=2.1e-15  Score=152.92  Aligned_cols=287  Identities=9%  Similarity=0.027  Sum_probs=178.3

Q ss_pred             ecccCCCccCCcee-----CC-CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCc-------eeEeecCCC---cce
Q 039497          134 RLTPYGVVDYSPSV-----SY-SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNK-------RVIVCERGG---WPT  197 (642)
Q Consensus       134 ~lt~~~~~~~~~~~-----SP-DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~l~~~~~~---~~~  197 (642)
                      .|..+.......+|     +| ||++||..+.+.            .|.+|++..++.       ......+..   .++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~------------~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~   83 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDK------------TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA   83 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTS------------CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCC------------EEEEEECCcCCcccccccccchhccCCCceEEEE
Confidence            34445555555666     66 999999988766            688999876531       111122222   358


Q ss_pred             EeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee
Q 039497          198 WSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT  277 (642)
Q Consensus       198 wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~  277 (642)
                      |+|++.++++. ..++.  |..+++.++.       ....+..+...+..++|+|||++|+....++     .+.+||+.
T Consensus        84 ~~~~~~~l~s~-s~D~~--v~lwd~~~~~-------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~-----~i~~wd~~  148 (343)
T 2xzm_R           84 LSQENCFAISS-SWDKT--LRLWDLRTGT-------TYKRFVGHQSEVYSVAFSPDNRQILSAGAER-----EIKLWNIL  148 (343)
T ss_dssp             ECSSTTEEEEE-ETTSE--EEEEETTSSC-------EEEEEECCCSCEEEEEECSSTTEEEEEETTS-----CEEEEESS
T ss_pred             ECCCCCEEEEE-cCCCc--EEEEECCCCc-------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCC-----EEEEEecc
Confidence            99999888877 56774  4455666653       4456667766788899999999998865544     89999973


Q ss_pred             cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCC----------CCEEEEE
Q 039497          278 LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPD----------GGLIVFN  347 (642)
Q Consensus       278 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd----------g~~l~~~  347 (642)
                      ..               ..... . ..              ......+       ....|+|+          +..++..
T Consensus       149 ~~---------------~~~~~-~-~~--------------~~~~~~v-------~~~~~~~~~~~~~~~~~~~~~l~s~  190 (343)
T 2xzm_R          149 GE---------------CKFSS-A-EK--------------ENHSDWV-------SCVRYSPIMKSANKVQPFAPYFASV  190 (343)
T ss_dssp             SC---------------EEEEC-C-TT--------------TSCSSCE-------EEEEECCCCCSCSCCCSSCCEEEEE
T ss_pred             CC---------------ceeee-e-cc--------------cCCCcee-------eeeeeccccccccccCCCCCEEEEE
Confidence            10               00000 0 00              0000000       12234444          4666665


Q ss_pred             ecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497          348 HDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD  426 (642)
Q Consensus       348 ~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  426 (642)
                      +.   ...|.++|........+.. ...+..+.|+|||++|+..+.       ++.+++|++..        .+.    .
T Consensus       191 ~~---d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~-------dg~v~iwd~~~--------~~~----~  248 (343)
T 2xzm_R          191 GW---DGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGK-------DKKLLIWDILN--------LTY----P  248 (343)
T ss_dssp             ET---TSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-------TCEEEEEESSC--------CSS----C
T ss_pred             cC---CCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcC-------CCeEEEEECCC--------Ccc----c
Confidence            53   3567778854433222222 566889999999999988874       78999999843        111    2


Q ss_pred             eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-----------CCCCcccceeEecCC
Q 039497          427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-----------DGPWIDTMPSWSPKG  495 (642)
Q Consensus       427 ~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-----------~~~~~~~~~~~spdG  495 (642)
                      ...+.. . ..+..++|+||+++|+....    ..|.+|++.+++. .....+.           .+...+..++|+|+|
T Consensus       249 ~~~~~~-~-~~v~~v~~sp~~~~la~~~d----~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  321 (343)
T 2xzm_R          249 QREFDA-G-STINQIAFNPKLQWVAVGTD----QGVKIFNLMTQSK-APVCTIEAEPITKAEGQKGKNPQCTSLAWNALG  321 (343)
T ss_dssp             SEEEEC-S-SCEEEEEECSSSCEEEEEES----SCEEEEESSSCCS-CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred             ceeecC-C-CcEEEEEECCCCCEEEEECC----CCEEEEEeCCCCC-CceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence            233322 2 35778999999988775543    2588999887663 0011232           223345678999999


Q ss_pred             CEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          496 DLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      ++|+..+.++.        |.+|++++
T Consensus       322 ~~l~sg~~Dg~--------v~~w~~~~  340 (343)
T 2xzm_R          322 KKLFAGFTDGV--------IRTFSFET  340 (343)
T ss_dssp             CCEEEEETTSE--------EEEEEEEE
T ss_pred             CeEEEecCCce--------EEEEEEEc
Confidence            99988887654        88888754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1e-16  Score=167.11  Aligned_cols=310  Identities=11%  Similarity=-0.003  Sum_probs=179.6

Q ss_pred             CccccceeecCCcEEEEEEeccCCceeeEEEEEee-----cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEee
Q 039497          243 VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT-----LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEP  317 (642)
Q Consensus       243 ~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~-----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~  317 (642)
                      ..+..++|||||++||.+..     ...+.  |..     .++...+...+++|||       ..+.      ...|...
T Consensus        16 ~~v~sv~~SpDG~~iASas~-----D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~------~~~~~~~   75 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFP-----DISIG--QPKYAKDINCNSKNLFHVKEFPLE-------FENK------LDFELAQ   75 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSS-----SEEEE--EECCCSCCSSBGGGTEEEEEECCC-------CCCT------TTTSCCC
T ss_pred             ccEEEEEECCCCCEEEEEcC-----Cceee--cccccceecCCCccEEEEEECCCC-------Ccce------EEEEeCC
Confidence            35778999999999998543     33554  542     2334455677889998       1122      1111110


Q ss_pred             ccCCCceeEEe-eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-----CCceeeeeecCCCEEEEEE
Q 039497          318 VASPVKELRML-RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-----RTAFYNSWSPTEKHVIYTS  391 (642)
Q Consensus       318 ~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-----~~~~~~~~spdg~~l~~~~  391 (642)
                        +. ..+... .......+|||||++|+..+.   ...+.+++.++ ....+...     ..+.+++|||||+.|+.++
T Consensus        76 --~~-~~~~~~~~~~V~~vawSPdG~~LAs~s~---dg~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs  148 (588)
T 2j04_A           76 --QN-GLLNSQPVCYPRVCKPSPIDDWMAVLSN---NGNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGN  148 (588)
T ss_dssp             --SS-CSSTTSCSCCEEEEEECSSSSCEEEEET---TSCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred             --Cc-eEeecCCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEc
Confidence              00 000000 111235689999999998765   35566777544 11222211     1378899999999999987


Q ss_pred             cCCCcccCCCeEEEEEEEeecCCCCCCCCCccc--cceEEc----cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497          392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIP--CDVKIL----TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL  465 (642)
Q Consensus       392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l----~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~  465 (642)
                      .       ++.++||++..        +....+  .....+    ..+. ..+..++|||||  ++..+.   +..+++|
T Consensus       149 ~-------DGtVkIWd~~~--------~~l~~~~~i~l~ti~~~~~gh~-~~V~sVawSPdg--Laass~---D~tVrlW  207 (588)
T 2j04_A          149 E-------DGELQFFSIRK--------NSENTPEFYFESSIRLSDAGSK-DWVTHIVWYEDV--LVAALS---NNSVFSM  207 (588)
T ss_dssp             T-------TSEEEEEECCC--------CTTTCCCCEEEEEEECSCTTCC-CCEEEEEEETTE--EEEEET---TCCEEEE
T ss_pred             C-------CCEEEEEECCC--------Cccccccceeeeeeeccccccc-ccEEEEEEcCCc--EEEEeC---CCeEEEE
Confidence            4       78999999865        110000  012333    2233 578889999999  555553   3479999


Q ss_pred             ECCCCccccceeeCC-CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497          466 DAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI  544 (642)
Q Consensus       466 d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~  544 (642)
                      ++++++.......+. .+...+..++|+  |+.|+.++. +        .|.+||+.+++...+.. ++..       .+
T Consensus       208 d~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~-~--------tIkLWd~~~~~~~~~~~-gh~~-------~V  268 (588)
T 2j04_A          208 TVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCP-G--------YVHKIDLKNYSISSLKT-GSLE-------NF  268 (588)
T ss_dssp             CCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECS-S--------EEEEEETTTTEEEEEEC-SCCS-------CC
T ss_pred             ECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeC-C--------eEEEEECCCCeEEEEEc-CCCc-------eE
Confidence            998766300012352 344578889999  688887764 3        39999999887755543 4555       67


Q ss_pred             cceEE--cCCCCEEEEEEecCC-cccC-CCCCCCCCC----CCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEe
Q 039497          545 NHVCF--SADGEWLLFTANLGA-VMAE-PVSWPNQFQ----PYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLG  616 (642)
Q Consensus       545 ~~~~~--S~Dg~~l~~~~~~~~-~~~~-~~~~~~~~~----~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~  616 (642)
                      ..++|  |||++.|+.+..++. .... .+.+.++..    ....+++|+..++....+.. ...+..++|||||+.+++
T Consensus       269 ~~va~~~s~d~~~La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~  347 (588)
T 2j04_A          269 HIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAI  347 (588)
T ss_dssp             CEEEETTCSSCEEEEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEE
T ss_pred             EEEEeeeCCCCCEEEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEE
Confidence            88999  999987776654432 0000 000000000    01123333333333332222 233567999999998876


Q ss_pred             ecCC
Q 039497          617 KLRL  620 (642)
Q Consensus       617 ~~~~  620 (642)
                      ....
T Consensus       348 ~~~i  351 (588)
T 2j04_A          348 VYDM  351 (588)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.72  E-value=6.5e-15  Score=163.81  Aligned_cols=305  Identities=10%  Similarity=0.061  Sum_probs=194.2

Q ss_pred             eEeeCC-eEEEEEecCCCc-eEEEEEecCCCcccccCCccceeeCC-CCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          197 TWSGDS-TIYFHRQADDGW-WSIFRVSFPENLEFLGFPIAPTRVTP-PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       197 ~wspdg-~~~~~~~~~~g~-~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      ..+++| .+|+........ ..+|+....++...++|+-.   +.. +...+..++|||||++|+|.....+.....|++
T Consensus        83 ~p~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~vllD~n~---la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v  159 (693)
T 3iuj_A           83 APFREGRYHYFFKNDGLQNQNVLWRQQEGKPAEVFLDPNT---LSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHL  159 (693)
T ss_dssp             CCEEETTEEEEEEECSSCSSCEEEEECTTSCCEEEECGGG---GSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             CCEEECCEEEEEEEcCCCceeEEEEeCCCCCcEEEEehhh---ccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEE
Confidence            334555 566666444333 36677544333111111100   111 112455678999999999998888888889999


Q ss_pred             EEeecCCC-------CcccCCeecCCCCEEEEEEeecCCC-----CCCcccceEeeccCCCce-eEEeeeCC------Cc
Q 039497          274 YDLTLNPN-------FHHYNPFVSANSEFIGYHRFRGEST-----EGQSTIPHLEPVASPVKE-LRMLRLNG------SF  334 (642)
Q Consensus       274 ~d~~~~~~-------~~~~~~~~spDg~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~  334 (642)
                      +|+.++..       .....++|| ||+.|+|.+.+....     .+....+++..+.....+ ..+.....      ..
T Consensus       160 ~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~  238 (693)
T 3iuj_A          160 MDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVG  238 (693)
T ss_dssp             EETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEE
T ss_pred             EECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEE
Confidence            99944321       113578999 999999998764200     012234566666544321 12222211      24


Q ss_pred             cEEcCCCCEEEEEecCCC-ceeEEEEECCCC--CeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          335 PSFSPDGGLIVFNHDFEL-NAGIKIAKSDGS--KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~-~~~l~~~d~~~~--~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      +.|||||++|++...... ..+||+++++++  +.+.+..........|+++|++|+|.++.     +.....|+.++. 
T Consensus       239 ~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~-----~~~~~~l~~~d~-  312 (693)
T 3iuj_A          239 ATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNR-----DAPNRRLVTVDA-  312 (693)
T ss_dssp             EEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECT-----TCTTCEEEEEET-
T ss_pred             EEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECC-----CCCCCEEEEEeC-
Confidence            679999999998765433 359999999876  45666553322222388999999998863     233566777766 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPS  490 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~  490 (642)
                       +     ++.  ....+.+..+. ....  .|+++|++|++...+++..+|++++++++.    .+.+.. ....+..+.
T Consensus       313 -~-----~~~--~~~~~~l~~~~-~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----~~~l~~p~~~~~~~~~  377 (693)
T 3iuj_A          313 -A-----NPG--PAHWRDLIPER-QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR----VREVALPGLGSVSGFN  377 (693)
T ss_dssp             -T-----SCC--GGGCEEEECCC-SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE----EEEECCSSSSEEEECC
T ss_pred             -C-----CCC--ccccEEEecCC-CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe----eEEeecCCCceEEeee
Confidence             3     221  00235565554 3332  999999999999988888899999998665    355543 334556678


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      ++||++.|+|......    .+..||++|+++++.+.+..
T Consensus       378 ~~~d~~~l~~~~ss~~----tP~~l~~~d~~~g~~~~l~~  413 (693)
T 3iuj_A          378 GKHDDPALYFGFENYA----QPPTLYRFEPKSGAISLYRA  413 (693)
T ss_dssp             CCTTCSCEEEEEECSS----SCCEEEEECTTTCCEEEEEC
T ss_pred             cCCCCCEEEEEecCCC----CCCEEEEEECCCCeEEEEEe
Confidence            8999999988876533    45679999999988877764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.72  E-value=6.5e-15  Score=147.67  Aligned_cols=275  Identities=12%  Similarity=0.031  Sum_probs=183.0

Q ss_pred             EeecCCCCcccCCeecCCC-CEEEEEEeecCCCCCCcccceEeeccCCCc--eeEEeee---CCCccEEcCCCCEEEEEe
Q 039497          275 DLTLNPNFHHYNPFVSANS-EFIGYHRFRGESTEGQSTIPHLEPVASPVK--ELRMLRL---NGSFPSFSPDGGLIVFNH  348 (642)
Q Consensus       275 d~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~spdg~~l~~~~  348 (642)
                      ....++...+...+|+|++ +.|+....++.      ..+|-........  .+.....   ......|+|||++|+..+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~------v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKT------LISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSE------EEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCcc------EEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            3345666677778899976 56666544433      4445332211111  1111111   113468999999888766


Q ss_pred             cCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497          349 DFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD  426 (642)
Q Consensus       349 ~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  426 (642)
                      .   ...|.++|+.+++......  ...+..+.|+|+++.|+..+.       ++.+++|++..         .     .
T Consensus        85 ~---D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-------D~~i~vwd~~~---------~-----~  140 (319)
T 3frx_A           85 W---DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR-------DKTIKVWTIKG---------Q-----C  140 (319)
T ss_dssp             T---TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET-------TSCEEEEETTS---------C-----E
T ss_pred             C---CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC-------CCeEEEEECCC---------C-----e
Confidence            4   3678889998887554433  567889999999999988774       78899998743         2     4


Q ss_pred             eEEccccCCCCccCcEECCCC------CeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEE
Q 039497          427 VKILTKEETGNNAFPSCSPDG------KFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       427 ~~~l~~~~~~~~~~~~~SpDg------~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~  500 (642)
                      ...+..+. ..+..+.|+|++      ..|+..+.   +..|.+||+.+++.   ...+..+...+..++|+|||++|+.
T Consensus       141 ~~~~~~h~-~~v~~~~~~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~---~~~~~~h~~~v~~~~~sp~g~~l~s  213 (319)
T 3frx_A          141 LATLLGHN-DWVSQVRVVPNEKADDDSVTIISAGN---DKMVKAWNLNQFQI---EADFIGHNSNINTLTASPDGTLIAS  213 (319)
T ss_dssp             EEEECCCS-SCEEEEEECCC------CCEEEEEET---TSCEEEEETTTTEE---EEEECCCCSCEEEEEECTTSSEEEE
T ss_pred             EEEEeccC-CcEEEEEEccCCCCCCCccEEEEEeC---CCEEEEEECCcchh---heeecCCCCcEEEEEEcCCCCEEEE
Confidence            55555554 667778888854      35665553   34799999988775   5566667777888999999999998


Q ss_pred             EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497          501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG  580 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  580 (642)
                      .+.++.        |.+||+.+++.......  ..       .+..++|+|||..|+.....                  
T Consensus       214 ~~~dg~--------i~iwd~~~~~~~~~~~~--~~-------~v~~~~~sp~~~~la~~~~~------------------  258 (319)
T 3frx_A          214 AGKDGE--------IMLWNLAAKKAMYTLSA--QD-------EVFSLAFSPNRYWLAAATAT------------------  258 (319)
T ss_dssp             EETTCE--------EEEEETTTTEEEEEEEC--CS-------CEEEEEECSSSSEEEEEETT------------------
T ss_pred             EeCCCe--------EEEEECCCCcEEEEecC--CC-------cEEEEEEcCCCCEEEEEcCC------------------
Confidence            887764        99999988765443322  22       56889999999988776543                  


Q ss_pred             cEEEEEcCCCcee-eccC--------CCCCCCCcEEecCCceEEeecCCC
Q 039497          581 DLYVVKLDGSGLR-RLTW--------NGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       581 ~l~~~~~~~~~~~-~lt~--------~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      .+.+|+++.+... .+..        ....+..++|||||++|++....+
T Consensus       259 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          259 GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence            4566666654322 2211        122345789999999998865544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.72  E-value=2.1e-14  Score=145.05  Aligned_cols=299  Identities=13%  Similarity=0.036  Sum_probs=172.8

Q ss_pred             eeEEEEEec-CCCceeEee-cCC---CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCcccee---eCCCCCc
Q 039497          173 TDIVVFQES-DPNKRVIVC-ERG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTR---VTPPGVH  244 (642)
Q Consensus       173 ~~l~~~~~~-~g~~~~l~~-~~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~---l~~~~~~  244 (642)
                      ..|++|++. +++.+.+.. ...   ..++|+|||+.+++....++...+|.++..++        ....   +...+ .
T Consensus        15 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~-~   85 (343)
T 1ri6_A           15 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--------ALTFAAESALPG-S   85 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC--------CEEEEEEEECSS-C
T ss_pred             CeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC--------ceeeccccccCC-C
Confidence            378899885 444333322 222   35699999986666644447667777765555        2222   22223 5


Q ss_pred             cccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce
Q 039497          245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE  324 (642)
Q Consensus       245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (642)
                      ...++|+|||++|+++....    ..+.+||+.              +|+.....                .....    
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~----~~i~~~d~~--------------~~~~~~~~----------------~~~~~----  127 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNA----GNVSVTRLE--------------DGLPVGVV----------------DVVEG----  127 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTT----TEEEEEEEE--------------TTEEEEEE----------------EEECC----
T ss_pred             CcEEEEcCCCCEEEEEecCC----CeEEEEECC--------------CCcccccc----------------ccccC----
Confidence            66788999999888865432    267888762              11100000                00000    


Q ss_pred             eEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC-CCeeEEe-----e--cCCceeeeeecCCCEEEEEEcCCCc
Q 039497          325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKRWTLI-----K--DRTAFYNSWSPTEKHVIYTSTGPIF  396 (642)
Q Consensus       325 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~~~l~-----~--~~~~~~~~~spdg~~l~~~~~~~~~  396 (642)
                          ......+.|+|||++|++...  ....|+++++.. ++...+.     .  ...+..+.|+|||++|+++..    
T Consensus       128 ----~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~----  197 (343)
T 1ri6_A          128 ----LDGCHSANISPDNRTLWVPAL--KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE----  197 (343)
T ss_dssp             ----CTTBCCCEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET----
T ss_pred             ----CCCceEEEECCCCCEEEEecC--CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC----
Confidence                011235689999998877652  235788888876 5544322     1  335667899999999988873    


Q ss_pred             ccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-----CCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--C
Q 039497          397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-----TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--N  469 (642)
Q Consensus       397 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~  469 (642)
                        ....+.+|+++.  .     .+.. . ....+....     ......++|+|||++|++....++  .|.+|++.  +
T Consensus       198 --~~~~i~~~~~~~--~-----~g~~-~-~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~--~i~v~d~~~~~  264 (343)
T 1ri6_A          198 --LNSSVDVWELKD--P-----HGNI-E-CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS--LITVFSVSEDG  264 (343)
T ss_dssp             --TTTEEEEEESSC--T-----TSCC-E-EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTS
T ss_pred             --CCCEEEEEEecC--C-----CCcE-E-EEeeccccCccccccCCccceEECCCCCEEEEEecCCC--EEEEEEEcCCC
Confidence              367888888754  1     1210 0 111221111     012335899999999987765433  67777776  4


Q ss_pred             CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE
Q 039497          470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF  549 (642)
Q Consensus       470 g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  549 (642)
                      ++. ..+..+... .....++|+|||++|++.....     +...||.+|.++++.+.+.......       .+..++|
T Consensus       265 ~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~-----~~v~v~~~d~~~g~~~~~~~~~~g~-------~p~~i~~  330 (343)
T 1ri6_A          265 SVL-SKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKS-----HHISVYEIVGEQGLLHEKGRYAVGQ-------GPMWVVV  330 (343)
T ss_dssp             CCE-EEEEEEECS-SSCCCEEECTTSSEEEEECTTT-----CEEEEEEEETTTTEEEEEEEEECSS-------SCCEEEE
T ss_pred             Cce-EEeeeecCC-CccceEEECCCCCEEEEecCCC-----CeEEEEEEcCCCceeeEccccccCC-------CCeeEEE
Confidence            442 012223322 2367789999999988887543     3445565677787776665422211       3445666


Q ss_pred             cCCCCE
Q 039497          550 SADGEW  555 (642)
Q Consensus       550 S~Dg~~  555 (642)
                      .++.++
T Consensus       331 ~~~~~~  336 (343)
T 1ri6_A          331 NAHEGG  336 (343)
T ss_dssp             EEEC--
T ss_pred             EcccCC
Confidence            665443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.71  E-value=1.3e-15  Score=154.60  Aligned_cols=268  Identities=16%  Similarity=0.144  Sum_probs=170.7

Q ss_pred             eeeCCCCCcccccee-----ec-CCcEEEEEEeccCCceeeEEEEEeec---------------CCCCcccCCeecCCCC
Q 039497          236 TRVTPPGVHCFTPAA-----FH-DGKRLAVATRRKNRNFRHIEIYDLTL---------------NPNFHHYNPFVSANSE  294 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~-----Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~---------------~~~~~~~~~~~spDg~  294 (642)
                      ..+..+...+..++|     ++ ||++|+....++     .+.+||+..               .+...+....|+|+++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~-----~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDK-----TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTS-----CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCC-----EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence            344555556667777     66 999888865544     899999732               3344566778999999


Q ss_pred             EEEEEEeecCCCCCCcccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-
Q 039497          295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-  371 (642)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-  371 (642)
                      .|+....++.      ..+|  .+........+...  ......|+|||++|+..+.   ...|.++|+.+........ 
T Consensus        90 ~l~s~s~D~~------v~lw--d~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~  158 (343)
T 2xzm_R           90 FAISSSWDKT------LRLW--DLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA---EREIKLWNILGECKFSSAEK  158 (343)
T ss_dssp             EEEEEETTSE------EEEE--ETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET---TSCEEEEESSSCEEEECCTT
T ss_pred             EEEEEcCCCc------EEEE--ECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC---CCEEEEEeccCCceeeeecc
Confidence            8887655443      3333  22222111111111  1245789999998887654   3677888887543332221 


Q ss_pred             ---cCCceeeeeecCC----------CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCc
Q 039497          372 ---DRTAFYNSWSPTE----------KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN  438 (642)
Q Consensus       372 ---~~~~~~~~~spdg----------~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  438 (642)
                         ...+..+.|+|++          ..|+..+.       ++.+++|+...         .     ....+..+. ..+
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~-------d~~i~iwd~~~---------~-----~~~~~~~h~-~~v  216 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW-------DGRLKVWNTNF---------Q-----IRYTFKAHE-SNV  216 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET-------TSEEEEEETTT---------E-----EEEEEECCS-SCE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcC-------CCEEEEEcCCC---------c-----eeEEEcCcc-ccc
Confidence               3457788999987          56666653       78899998321         1     334444454 678


Q ss_pred             cCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEE
Q 039497          439 AFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI  518 (642)
Q Consensus       439 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~  518 (642)
                      ..++|+|||++|+..+.   +..|.+||+.....  ....+. ....+..++|+|++++|+......         |.+|
T Consensus       217 ~~~~~s~~g~~l~sgs~---dg~v~iwd~~~~~~--~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~---------v~iw  281 (343)
T 2xzm_R          217 NHLSISPNGKYIATGGK---DKKLLIWDILNLTY--PQREFD-AGSTINQIAFNPKLQWVAVGTDQG---------VKIF  281 (343)
T ss_dssp             EEEEECTTSSEEEEEET---TCEEEEEESSCCSS--CSEEEE-CSSCEEEEEECSSSCEEEEEESSC---------EEEE
T ss_pred             eEEEECCCCCEEEEEcC---CCeEEEEECCCCcc--cceeec-CCCcEEEEEECCCCCEEEEECCCC---------EEEE
Confidence            88999999999988774   34899999843331  022222 234577889999999877554432         8999


Q ss_pred             eCCCCceEEeeec------------CCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          519 KPDGSGLRRIHVA------------GPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       519 d~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      ++.+++...+...            ++..       .+..++|+|||++|+..+.++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~sp~g~~l~sg~~Dg  331 (343)
T 2xzm_R          282 NLMTQSKAPVCTIEAEPITKAEGQKGKNP-------QCTSLAWNALGKKLFAGFTDG  331 (343)
T ss_dssp             ESSSCCSCSEEECCCCSGGGBTTBCCSCC-------CEEEEEECSSSCCEEEEETTS
T ss_pred             EeCCCCCCceEEeecCcchhhhhhcCCCC-------ceEEEEECCCCCeEEEecCCc
Confidence            9977654321111            1122       467899999999998877665

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.71  E-value=9.3e-15  Score=150.56  Aligned_cols=285  Identities=14%  Similarity=0.147  Sum_probs=179.0

Q ss_pred             ecccCCCccCCceeCCCC-cEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec--CCC---cceEee-CCeEEE
Q 039497          134 RLTPYGVVDYSPSVSYSG-KFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE--RGG---WPTWSG-DSTIYF  206 (642)
Q Consensus       134 ~lt~~~~~~~~~~~SPDG-~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~~---~~~wsp-dg~~~~  206 (642)
                      .+..+.......+|+||| ++||....+.            .|.+|++.+++.......  +..   .+.|+| ++.+++
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg------------~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  135 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGG------------DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF  135 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTS------------CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCC------------eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence            444455556778999999 8999887665            699999998887766542  222   459999 567777


Q ss_pred             EEecCCCceEEEEEecCCCcccccCCccceeeCCC---CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497          207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP---GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH  283 (642)
Q Consensus       207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~  283 (642)
                      +. ..++...+  +++.+.        ....+...   ...+..++|+|+|++|+....++     .+.+||+.      
T Consensus       136 s~-~~d~~i~i--wd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~------  193 (383)
T 3ei3_B          136 VS-SIRGATTL--RDFSGS--------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG-----RLLLLGLD------  193 (383)
T ss_dssp             EE-ETTTEEEE--EETTSC--------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTS-----EEEEEETT------
T ss_pred             EE-eCCCEEEE--EECCCC--------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCC-----CEEEEECC------
Confidence            76 56774444  455554        44444333   24577889999999988865443     88888861      


Q ss_pred             ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCC-EEEEEecCCCceeEEEEECC
Q 039497          284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGG-LIVFNHDFELNAGIKIAKSD  362 (642)
Q Consensus       284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~l~~~d~~  362 (642)
                               ++.+...                   .....       ....+.|+|+++ .|+....   ...|.++|+.
T Consensus       194 ---------~~~~~~~-------------------~~h~~-------~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~  235 (383)
T 3ei3_B          194 ---------GHEIFKE-------------------KLHKA-------KVTHAEFNPRCDWLMATSSV---DATVKLWDLR  235 (383)
T ss_dssp             ---------SCEEEEE-------------------ECSSS-------CEEEEEECSSCTTEEEEEET---TSEEEEEEGG
T ss_pred             ---------CCEEEEe-------------------ccCCC-------cEEEEEECCCCCCEEEEEeC---CCEEEEEeCC
Confidence                     1111111                   00000       112458999999 5555443   3578888887


Q ss_pred             C----CCeeE-EeecCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC-
Q 039497          363 G----SKRWT-LIKDRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET-  435 (642)
Q Consensus       363 ~----~~~~~-l~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  435 (642)
                      .    +.... +.....+..+.|+| +++.|+..+.       ++.+++|++..        +.     ....+..+.. 
T Consensus       236 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~-------d~~i~iwd~~~--------~~-----~~~~~~~~~~~  295 (383)
T 3ei3_B          236 NIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ-------RNEIRVYSSYD--------WS-----KPDQIIIHPHR  295 (383)
T ss_dssp             GCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES-------SSEEEEEETTB--------TT-----SCSEEEECCBC
T ss_pred             CCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC-------CCcEEEEECCC--------Cc-----ccccccccccc
Confidence            6    33322 22266788999999 9999988764       68999999865        12     2222221110 


Q ss_pred             ----CCccCcEECCCCCeEEEEeCC------CCceeEEEEECCCCccccceeeCCCC--CCcccceeEecCCCEEEEEec
Q 039497          436 ----GNNAFPSCSPDGKFLVFRSGR------SGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTMPSWSPKGDLIAFSSN  503 (642)
Q Consensus       436 ----~~~~~~~~SpDg~~l~~~~~~------~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~  503 (642)
                          .......|+|++..++.....      ..+..|++||+.+++.   +..+...  ...+..++|+|||++|+..+ 
T Consensus       296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~---~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-  371 (383)
T 3ei3_B          296 QFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGL---VHQLRDPNAAGIISLNKFSPTGDVLASGM-  371 (383)
T ss_dssp             CCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCE---EEEECBTTBCSCCCEEEECTTSSEEEEEE-
T ss_pred             ccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCce---eeeecCCCCCceEEEEEEecCccEEEEec-
Confidence                011123555555554433211      1345899999998886   5666542  34445569999999998886 


Q ss_pred             CCCCCCCCceeEEEEeCCC
Q 039497          504 RHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       504 ~~~~~~~~~~~l~~~d~~~  522 (642)
                      ++.        |.+||+++
T Consensus       372 d~~--------i~iw~~~~  382 (383)
T 3ei3_B          372 GFN--------ILIWNRED  382 (383)
T ss_dssp             TTE--------EEEEECC-
T ss_pred             CCc--------EEEEecCC
Confidence            432        99999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.70  E-value=1.2e-14  Score=148.77  Aligned_cols=234  Identities=15%  Similarity=0.115  Sum_probs=156.3

Q ss_pred             CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497          241 PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS  320 (642)
Q Consensus       241 ~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~  320 (642)
                      +...+..++|+|||++|++....     ..+.+||+....              .-.                 +..+..
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d-----~~v~i~~~~~~~--------------~~~-----------------~~~~~~   50 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNN-----HEVHIYEKSGNK--------------WVQ-----------------VHELKE   50 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSS-----SEEEEEEEETTE--------------EEE-----------------EEEEEC
T ss_pred             cCCCeEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCc--------------EEe-----------------eeeecC
Confidence            44467788999999988885433     378888873210              000                 000000


Q ss_pred             CCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCc
Q 039497          321 PVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIF  396 (642)
Q Consensus       321 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~  396 (642)
                      ..       .....+.|+|+|+.|+....   ...|.++++.+++......    ...+..+.|+|+++.|+....    
T Consensus        51 h~-------~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----  116 (372)
T 1k8k_C           51 HN-------GQVTGVDWAPDSNRIVTCGT---DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG----  116 (372)
T ss_dssp             CS-------SCEEEEEEETTTTEEEEEET---TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET----
T ss_pred             CC-------CcccEEEEeCCCCEEEEEcC---CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC----
Confidence            00       11124589999998888664   3567777877776433322    556889999999999988874    


Q ss_pred             ccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--------
Q 039497          397 QSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--------  468 (642)
Q Consensus       397 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--------  468 (642)
                         ++.+.+|++..  .      ...  .....+.......+..+.|+||+++|+..+..   ..|.+||+.        
T Consensus       117 ---d~~v~i~d~~~--~------~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~  180 (372)
T 1k8k_C          117 ---SRVISICYFEQ--E------NDW--WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---FKCRIFSAYIKEVEERP  180 (372)
T ss_dssp             ---TSSEEEEEEET--T------TTE--EEEEEECTTCCSCEEEEEECTTSSEEEEEETT---SCEEEEECCCTTTSCCC
T ss_pred             ---CCEEEEEEecC--C------Ccc--eeeeeeecccCCCeeEEEEcCCCCEEEEEcCC---CCEEEEEcccccccccc
Confidence               68899999976  2      100  01223322222567889999999998877643   378888853        


Q ss_pred             ----------CCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497          469 ----------NGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD  538 (642)
Q Consensus       469 ----------~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  538 (642)
                                .++.   +..+..+...+..+.|+|+|++|+..+.++.        |.+||+.+++...... ....   
T Consensus       181 ~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------i~i~d~~~~~~~~~~~-~~~~---  245 (372)
T 1k8k_C          181 APTPWGSKMPFGEL---MFESSSSCGWVHGVCFSANGSRVAWVSHDST--------VCLADADKKMAVATLA-SETL---  245 (372)
T ss_dssp             CCBTTBSCCCTTCE---EEECCCCSSCEEEEEECSSSSEEEEEETTTE--------EEEEEGGGTTEEEEEE-CSSC---
T ss_pred             cccccccccchhhh---eEecCCCCCeEEEEEECCCCCEEEEEeCCCE--------EEEEECCCCceeEEEc-cCCC---
Confidence                      4554   5566666667888999999999988887654        9999998776554443 2333   


Q ss_pred             cccccccceEEcCCCCEEEEE
Q 039497          539 VDRERINHVCFSADGEWLLFT  559 (642)
Q Consensus       539 ~~~~~~~~~~~S~Dg~~l~~~  559 (642)
                          .+..+.|+|||+.|+..
T Consensus       246 ----~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          246 ----PLLAVTFITESSLVAAG  262 (372)
T ss_dssp             ----CEEEEEEEETTEEEEEE
T ss_pred             ----CeEEEEEecCCCEEEEE
Confidence                56789999999866654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.70  E-value=1.2e-14  Score=146.45  Aligned_cols=280  Identities=13%  Similarity=0.077  Sum_probs=172.3

Q ss_pred             EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCC--ccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCC
Q 039497          204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGV--HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN  281 (642)
Q Consensus       204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~  281 (642)
                      ++++. ..++  .|+.++..++.       ....+.....  ....++|||||++++++....    ..|++||+..   
T Consensus         3 ~~v~~-~~~~--~v~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~----~~v~~~d~~~---   65 (337)
T 1pby_B            3 YILAP-ARPD--KLVVIDTEKMA-------VDKVITIADAGPTPMVPMVAPGGRIAYATVNKS----ESLVKIDLVT---   65 (337)
T ss_dssp             EEEEE-ETTT--EEEEEETTTTE-------EEEEEECTTCTTCCCCEEECTTSSEEEEEETTT----TEEEEEETTT---
T ss_pred             EEEEc-CCCC--eEEEEECCCCc-------EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC----CeEEEEECCC---
Confidence            34444 3445  78888888773       2233332221  366789999999888765432    3677777622   


Q ss_pred             CcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC-----C----C
Q 039497          282 FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF-----E----L  352 (642)
Q Consensus       282 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----~----~  352 (642)
                                 ++.+...                 ..... .   ........+.|+|||++|++....     .    .
T Consensus        66 -----------~~~~~~~-----------------~~~~~-~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           66 -----------GETLGRI-----------------DLSTP-E---ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             -----------CCEEEEE-----------------ECCBT-T---EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             -----------CCeEeeE-----------------EcCCc-c---cccccccceEECCCCCEEEEEeccccccccccccc
Confidence                       1111111                 00000 0   001123456899999988886411     1    3


Q ss_pred             ceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          353 NAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ...|+++|+++++...... ...+..+.|+|||++|++..         ..+.+|++..         +.    ....+.
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------~~i~~~d~~~---------~~----~~~~~~  171 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------RDLHVMDPEA---------GT----LVEDKP  171 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------SSEEEEETTT---------TE----EEEEEC
T ss_pred             CceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC---------CeEEEEECCC---------Cc----Eeeeee
Confidence            4789999998877554443 55677889999999988772         3566666533         21    222332


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCCce---------------------eEEEEECCCCccccceeeCC--CCCCcccc
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSGHK---------------------NLFVLDAVNGEFNGDIRQLT--DGPWIDTM  488 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~---------------------~l~~~d~~~g~~~~~~~~l~--~~~~~~~~  488 (642)
                      ..  .......|+|||++|++.....+..                     .|+++|+.+++.    ..+.  ........
T Consensus       172 ~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~~~~  245 (337)
T 1pby_B          172 IQ--SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM----AMREVRIMDVFYFS  245 (337)
T ss_dssp             ST--TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE----EEEEEEECSSCEEE
T ss_pred             cc--ccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc----eEeecCCCCCceee
Confidence            22  2223568999999887665433321                     589999998874    3322  22233456


Q ss_pred             eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccC
Q 039497          489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAE  568 (642)
Q Consensus       489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~  568 (642)
                      ++|+|||++|++..  +        .|++||+++++........  .       .+..++|+|||++|++...+      
T Consensus       246 ~~~s~dg~~l~~~~--~--------~v~~~d~~~~~~~~~~~~~--~-------~~~~~~~s~dg~~l~~~~~~------  300 (337)
T 1pby_B          246 TAVNPAKTRAFGAY--N--------VLESFDLEKNASIKRVPLP--H-------SYYSVNVSTDGSTVWLGGAL------  300 (337)
T ss_dssp             EEECTTSSEEEEEE--S--------EEEEEETTTTEEEEEEECS--S-------CCCEEEECTTSCEEEEESBS------
T ss_pred             EEECCCCCEEEEeC--C--------eEEEEECCCCcCcceecCC--C-------ceeeEEECCCCCEEEEEcCC------
Confidence            89999999988872  2        3999999887765444322  1       35689999999988876432      


Q ss_pred             CCCCCCCCCCCCcEEEEEcCCCce-eecc
Q 039497          569 PVSWPNQFQPYGDLYVVKLDGSGL-RRLT  596 (642)
Q Consensus       569 ~~~~~~~~~~~~~l~~~~~~~~~~-~~lt  596 (642)
                                 ..|.+|++.+++. ..+.
T Consensus       301 -----------~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          301 -----------GDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             -----------SEEEEEETTTCCEEEEEE
T ss_pred             -----------CcEEEEECcCCcEEEEEE
Confidence                       2899999987764 3443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.70  E-value=1.3e-14  Score=148.13  Aligned_cols=292  Identities=12%  Similarity=0.118  Sum_probs=164.0

Q ss_pred             EEEEEeccCCceeeEEEEEeecC----------CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc-CCCcee
Q 039497          257 LAVATRRKNRNFRHIEIYDLTLN----------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA-SPVKEL  325 (642)
Q Consensus       257 l~~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  325 (642)
                      .+|+..........|++|.+...          .......++|+|||+.|++...++..  ......|..... +....+
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~--~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKD--QAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSST--TCEEEEEEEETTTTEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCC--CCcEEEEEEeCCCCcEEEe
Confidence            34444433333446666665211          22334456999999999888764211  111333433332 222222


Q ss_pred             EEeeeCCCcc-EEcCCCCEEEEEecCCCceeEEEEECCCCC-eeE---Eee-c-----------CCceeeeeecCCCEEE
Q 039497          326 RMLRLNGSFP-SFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWT---LIK-D-----------RTAFYNSWSPTEKHVI  388 (642)
Q Consensus       326 ~~~~~~~~~~-~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-~~~---l~~-~-----------~~~~~~~~spdg~~l~  388 (642)
                      ......+..+ .++.||++|++....  ...|.+++++... ...   ... .           ..+..+.|+|||++|+
T Consensus        93 ~~~~~~~~~p~~~~~dg~~l~~~~~~--~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           93 NTQKTMGADPCYLTTNGKNIVTANYS--GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEEECSSSCEEEEEECSSEEEEEETT--TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             eEeccCCCCcEEEEECCCEEEEEECC--CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence            2222122222 234489988776643  3567777765322 111   111 1           1235689999999998


Q ss_pred             EEEcCCCcccCCCeEEEEEEEeecCCCCCCCC----Cccccc--eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497          389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNR----EEIPCD--VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL  462 (642)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~--~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l  462 (642)
                      ++..      ....+.+|+++.  .     ++    ..+...  ...+..........++|||||++|++....++  .|
T Consensus       171 ~~~~------~~~~v~v~~~~~--~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~--~v  235 (361)
T 3scy_A          171 ADDL------GTDQIHKFNINP--N-----ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG--TV  235 (361)
T ss_dssp             EEET------TTTEEEEEEECT--T-----CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC--EE
T ss_pred             EEeC------CCCEEEEEEEcC--C-----CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC--eE
Confidence            8874      367889998875  2     11    001000  01111111134567899999999988875443  68


Q ss_pred             EEEECCCCccccceeeCCC---CCCcccceeEecCCCEEEEEecC-CCCCCCCceeEEEEeC--CCCceEEeeecCCCCC
Q 039497          463 FVLDAVNGEFNGDIRQLTD---GPWIDTMPSWSPKGDLIAFSSNR-HNPDNVEAFSLYVIKP--DGSGLRRIHVAGPEGS  536 (642)
Q Consensus       463 ~~~d~~~g~~~~~~~~l~~---~~~~~~~~~~spdG~~l~~~~~~-~~~~~~~~~~l~~~d~--~~~~~~~l~~~~~~~~  536 (642)
                      .+|++.+|+. ..+..+..   .......++|||||++|++.... .     +  .|.+|++  .+++.+.+....... 
T Consensus       236 ~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~-----~--~i~v~~~~~~~g~~~~~~~~~~g~-  306 (361)
T 3scy_A          236 IAFRYADGML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA-----D--GVAIFKVDETNGTLTKVGYQLTGI-  306 (361)
T ss_dssp             EEEEEETTEE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS-----C--EEEEEEECTTTCCEEEEEEEECSS-
T ss_pred             EEEEecCCce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC-----C--EEEEEEEcCCCCcEEEeeEecCCC-
Confidence            8888777763 00122211   11223578999999998877765 2     2  3666655  466665554322222 


Q ss_pred             CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497          537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       537 ~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                            .+..++|||||++|++.....+..              .||.+|..+++++.+.
T Consensus       307 ------~~~~~~~spdg~~l~~~~~~~~~v--------------~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          307 ------HPRNFIITPNGKYLLVACRDTNVI--------------QIFERDQATGLLTDIK  346 (361)
T ss_dssp             ------CCCEEEECTTSCEEEEEETTTTEE--------------EEEEECTTTCCEEECS
T ss_pred             ------CCceEEECCCCCEEEEEECCCCCE--------------EEEEEECCCCcEeecc
Confidence                  456899999999998887554322              5666787788877665

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.69  E-value=6.5e-15  Score=149.78  Aligned_cols=303  Identities=10%  Similarity=0.047  Sum_probs=184.1

Q ss_pred             CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cC-C--CcceEeeC---CeEEEEEec
Q 039497          138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ER-G--GWPTWSGD---STIYFHRQA  210 (642)
Q Consensus       138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~-~--~~~~wspd---g~~~~~~~~  210 (642)
                      +.......+|||||++++......        .....|.+|++.+++...+.. .+ .  ..+.|+|+   +.++++. .
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~--------~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~   87 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFA--------RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG-D   87 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC----------CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE-E
T ss_pred             CCCceEEEEEcCCCceEEEecCcc--------CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe-c
Confidence            444456789999998877654320        014579999999988654433 22 2  24699998   5777776 4


Q ss_pred             CCCceEEEEEecCCCcccccCCccceeeCCCCCccccc------eeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcc
Q 039497          211 DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTP------AAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHH  284 (642)
Q Consensus       211 ~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~  284 (642)
                      .+|...+  ++..++..      ....+..+...+..+      +|+|+|++|+....++     .+.+||+......  
T Consensus        88 ~dg~i~i--wd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~-----~i~vwd~~~~~~~--  152 (357)
T 3i2n_A           88 FGGNLHI--WNLEAPEM------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG-----TVKVWDPRQKDDP--  152 (357)
T ss_dssp             TTSCEEE--ECTTSCSS------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS-----CEEEECTTSCSSC--
T ss_pred             CCCeEEE--EeCCCCCc------cEEEEEecccceEEEeeccccccCCCccEEEEEeCCC-----eEEEEeCCCCCCc--
Confidence            5675445  45554420      345555555455555      5689999988865544     7889987332100  


Q ss_pred             cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC-CceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497          285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP-VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG  363 (642)
Q Consensus       285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~  363 (642)
                                                 ...+...... ...+....   ..+.|+|+++.|+....   ...|.++|+.+
T Consensus       153 ---------------------------~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~l~~~~~---d~~i~i~d~~~  199 (357)
T 3i2n_A          153 ---------------------------VANMEPVQGENKRDCWTVA---FGNAYNQEERVVCAGYD---NGDIKLFDLRN  199 (357)
T ss_dssp             ---------------------------SEEECCCTTSCCCCEEEEE---EECCCC-CCCEEEEEET---TSEEEEEETTT
T ss_pred             ---------------------------ceeccccCCCCCCceEEEE---EEeccCCCCCEEEEEcc---CCeEEEEECcc
Confidence                                       0000000000 00111010   12347899998888654   36899999998


Q ss_pred             CCeeEEee-cCCceeeeeec---CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCcc
Q 039497          364 SKRWTLIK-DRTAFYNSWSP---TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA  439 (642)
Q Consensus       364 ~~~~~l~~-~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  439 (642)
                      ++...... ...+..+.|+|   +++.|+....       ++.+.+|++..        +..........+..+. ..+.
T Consensus       200 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~--------~~~~~~~~~~~~~~~~-~~v~  263 (357)
T 3i2n_A          200 MALRWETNIKNGVCSLEFDRKDISMNKLVATSL-------EGKFHVFDMRT--------QHPTKGFASVSEKAHK-STVW  263 (357)
T ss_dssp             TEEEEEEECSSCEEEEEESCSSSSCCEEEEEES-------TTEEEEEEEEE--------EETTTEEEEEEEECCS-SCEE
T ss_pred             CceeeecCCCCceEEEEcCCCCCCCCEEEEECC-------CCeEEEEeCcC--------CCcccceeeeccCCCc-CCEE
Confidence            87655444 67788999999   9999888764       78999999976        1100000011122444 6778


Q ss_pred             CcEECCCCCeEEEEeCCCCceeEEEEECCCCccc----------------cceeeCCCCCCcccceeEecCCCEEEE-Ee
Q 039497          440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN----------------GDIRQLTDGPWIDTMPSWSPKGDLIAF-SS  502 (642)
Q Consensus       440 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~----------------~~~~~l~~~~~~~~~~~~spdG~~l~~-~~  502 (642)
                      .+.|+|+|+.++++...++  .|.+|++.++...                ..+..+..+...+..++|+|+|++|++ .+
T Consensus       264 ~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~  341 (357)
T 3i2n_A          264 QVRHLPQNRELFLTAGGAG--GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS  341 (357)
T ss_dssp             EEEEETTEEEEEEEEETTS--EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE
T ss_pred             EEEECCCCCcEEEEEeCCC--cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec
Confidence            8999999995444544444  6777787654320                013344555667788999999999985 44


Q ss_pred             cCCCCCCCCceeEEEEeCCCC
Q 039497          503 NRHNPDNVEAFSLYVIKPDGS  523 (642)
Q Consensus       503 ~~~~~~~~~~~~l~~~d~~~~  523 (642)
                      .++        .|++||+...
T Consensus       342 ~d~--------~i~iw~~~~~  354 (357)
T 3i2n_A          342 FDQ--------TVRVLIVTKL  354 (357)
T ss_dssp             TTS--------EEEEEEECC-
T ss_pred             CCC--------cEEEEECCCc
Confidence            443        3899998653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.69  E-value=2.5e-14  Score=147.99  Aligned_cols=305  Identities=11%  Similarity=0.028  Sum_probs=191.2

Q ss_pred             EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC-------ceeEeecCC--CcceEeeC--
Q 039497          133 TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN-------KRVIVCERG--GWPTWSGD--  201 (642)
Q Consensus       133 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~l~~~~~--~~~~wspd--  201 (642)
                      ..+..+.......+|+|  ++||....++            .|.+|++.+++       ...+.....  ..+.|+|+  
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg------------~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   75 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDG------------YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE   75 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTS------------EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCC------------EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccc
Confidence            34445555567788998  7888887665            79999999987       333332222  24599999  


Q ss_pred             --C---eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC-----CCccccceee----cCCcE-EEEEEeccCC
Q 039497          202 --S---TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP-----GVHCFTPAAF----HDGKR-LAVATRRKNR  266 (642)
Q Consensus       202 --g---~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~S----pdG~~-l~~~~~~~~~  266 (642)
                        +   .++++. ..+|...+|.+.......    ......+..+     ...+..++|+    |+|++ |+....++  
T Consensus        76 ~~g~~~~~l~s~-~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--  148 (397)
T 1sq9_A           76 RDAFELCLVATT-SFSGDLLFYRITREDETK----KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG--  148 (397)
T ss_dssp             TTTEEEEEEEEE-ETTSCEEEEEEEECTTTC----CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS--
T ss_pred             cCCccccEEEEE-cCCCCEEEEEccCCcccc----cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC--
Confidence              8   888877 567866666654332100    0004555555     3567788999    99999 77755443  


Q ss_pred             ceeeEEEEEeecCCCCc-ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEE
Q 039497          267 NFRHIEIYDLTLNPNFH-HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV  345 (642)
Q Consensus       267 ~~~~i~~~d~~~~~~~~-~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  345 (642)
                         .+.+||+....... .....|++.+......                 ....      ........+.|+|+| .|+
T Consensus       149 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~------~~~~~i~~~~~~~~~-~l~  201 (397)
T 1sq9_A          149 ---TTYIWKFHPFADESNSLTLNWSPTLELQGTV-----------------ESPM------TPSQFATSVDISERG-LIA  201 (397)
T ss_dssp             ---CEEEEEEESSSSHHHHTTTCCCCEEEEEEEE-----------------CCSS------SSCCCCCEEEECTTS-EEE
T ss_pred             ---cEEEEeCCccccccccceeeccCcceeeeee-----------------cccc------CCCCCceEEEECCCc-eEE
Confidence               79999985410000 0011122211100000                 0000      001122456899999 666


Q ss_pred             EEecCCCceeEEEEECCCCCeeEEee--------cCCceeeeeecCCCEEEEEEcCCCcccCC---CeEEEEEEEeecCC
Q 039497          346 FNHDFELNAGIKIAKSDGSKRWTLIK--------DRTAFYNSWSPTEKHVIYTSTGPIFQSER---ATVQIARVSFQLDP  414 (642)
Q Consensus       346 ~~~~~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~---~~~~l~~~~~~~~~  414 (642)
                      ....   ...|.++|+..++......        ...+..+.|+|+++.|+....       +   +.+.+|++..    
T Consensus       202 ~~~~---dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~-------d~~~g~i~i~d~~~----  267 (397)
T 1sq9_A          202 TGFN---NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD-------SNSFGCITLYETEF----  267 (397)
T ss_dssp             EECT---TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE-------ETTEEEEEEEETTT----
T ss_pred             EEeC---CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec-------CCCCceEEEEECCC----
Confidence            6443   4678999998776543322        446788999999999988764       4   6888888754    


Q ss_pred             CCCCCCCccccceEEccc-------------cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-
Q 039497          415 SDDNNREEIPCDVKILTK-------------EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-  480 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~-------------~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-  480 (642)
                          +.     ....+..             +. ..+..+.|+|||++|+..+.   ...|.+||+.+++.   +..+. 
T Consensus       268 ----~~-----~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~---~~~~~~  331 (397)
T 1sq9_A          268 ----GE-----RIGSLSVPTHSSQASLGEFAHS-SWVMSLSFNDSGETLCSAGW---DGKLRFWDVKTKER---ITTLNM  331 (397)
T ss_dssp             ----CC-----EEEEECBC--------CCBSBS-SCEEEEEECSSSSEEEEEET---TSEEEEEETTTTEE---EEEEEC
T ss_pred             ----Cc-----ccceeccCcccccccccccccC-CcEEEEEECCCCCEEEEEeC---CCeEEEEEcCCCce---eEEEec
Confidence                22     4444544             44 67788999999999887773   34899999998886   55555 


Q ss_pred             -----CC---------------CCcccceeEecCC----------CEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497          481 -----DG---------------PWIDTMPSWSPKG----------DLIAFSSNRHNPDNVEAFSLYVIKPDGS  523 (642)
Q Consensus       481 -----~~---------------~~~~~~~~~spdG----------~~l~~~~~~~~~~~~~~~~l~~~d~~~~  523 (642)
                           .+               ...+..++|+|+|          ++|+..+.++.        |.+|+++++
T Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~--------i~iw~~~~g  396 (397)
T 1sq9_A          332 HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS--------IRWFREAGG  396 (397)
T ss_dssp             CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE--------EEEEEEEC-
T ss_pred             ccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc--------EEEEEcCCC
Confidence                 44               5667889999999          67777776654        889998765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.68  E-value=1.9e-14  Score=141.41  Aligned_cols=190  Identities=15%  Similarity=0.217  Sum_probs=139.8

Q ss_pred             EEcCCCCEEEEEe-cCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          336 SFSPDGGLIVFNH-DFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       336 ~~spdg~~l~~~~-~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      .|+++|++|+|.. ...+...|+++++++...++|+....   +.++|+|+.|+|++.        +...|+.+++  + 
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~---~~~~~~g~~iy~t~~--------g~~~Iy~~~l--~-  175 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL---FTCNTSDRYFYYNNP--------KNGQLYRYDT--A-  175 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC---CCSEEETTEEEEECT--------TTCCEEEEET--T-
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc---eEeeEECCEEEEEeC--------CCceEEEEEC--C-
Confidence            6788889998876 23567899999999988888876332   567999999999973        3446777877  4 


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK  494 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd  494 (642)
                          ++     ..+.|....   ...+ ++|+|++|+|+....+ .+|++++++++..    +.|+...    .+.|+|+
T Consensus       176 ----g~-----~~~~l~~~~---~~~~-~~P~g~~iy~t~~~~~-~~I~~~~ldG~~~----~~Lt~~~----~~~~~~~  233 (302)
T 3s25_A          176 ----SQ-----SEALFYDCN---CYKP-VVLDDTNVYYMDVNRD-NAIVHVNINNPNP----VVLTEAN----IEHYNVY  233 (302)
T ss_dssp             ----TT-----EEEEEECSC---EEEE-EEEETTEEEEEEGGGT-TEEEEECSSSCCC----EECSCSC----EEEEEEE
T ss_pred             ----CC-----CEEEEeCCC---ccce-eeecCCEEEEEEcCCC-cEEEEEECCCCCe----EEEeCCC----cceEEEC
Confidence                33     455564432   2223 5699999999876543 6899999997774    7787543    2679999


Q ss_pred             CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497          495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN  574 (642)
Q Consensus       495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~  574 (642)
                      |++|+|.....      ...|++++++|...++|...  .           ...+++.+.+|+|+....+          
T Consensus       234 g~~Iy~~~~~~------~~~i~~~~~DG~~r~~l~~~--~-----------~~~i~i~~d~Iy~td~~~~----------  284 (302)
T 3s25_A          234 GSLIFYQRGGD------NPALCVVKNDGTGFKELAKG--E-----------FCNINVTSQYVYFTDFVSN----------  284 (302)
T ss_dssp             TTEEEEEECSS------SCEEEEEETTSCCCEEEEES--C-----------EEEEEECSSEEEEEETTTC----------
T ss_pred             CCEEEEEECCC------CcEEEEEECCCCccEEeeCC--c-----------cceEEEeCCEEEEEECCCC----------
Confidence            99999876542      25799999999888888752  1           2367889999999985432          


Q ss_pred             CCCCCCcEEEEEcCCCceeecc
Q 039497          575 QFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       575 ~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                            .|++++++|...++|.
T Consensus       285 ------~i~~~~~dGs~~~~l~  300 (302)
T 3s25_A          285 ------KEYCTSTQNPDTIKAL  300 (302)
T ss_dssp             ------CEEEEESSSCCSCEEC
T ss_pred             ------eEEEEECCCCCceEec
Confidence                  6999999887766554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.68  E-value=1.8e-14  Score=147.46  Aligned_cols=289  Identities=10%  Similarity=-0.022  Sum_probs=181.3

Q ss_pred             CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC--ceeEeecCC---CcceEeeCCeEEEEEecCC
Q 039497          138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN--KRVIVCERG---GWPTWSGDSTIYFHRQADD  212 (642)
Q Consensus       138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~l~~~~~---~~~~wspdg~~~~~~~~~~  212 (642)
                      +.......+|||||++||+...+.            .|++|++.+++  .......+.   ..+.|+|++.++++. ..+
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~------------~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~d   73 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNH------------EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC-GTD   73 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSS------------EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE-ETT
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCC------------EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEE-cCC
Confidence            344456789999999999886554            79999999885  222222222   246999999888877 467


Q ss_pred             CceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCC
Q 039497          213 GWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSAN  292 (642)
Q Consensus       213 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spD  292 (642)
                      |...+|.+  .++..     .....+..+...+..++|+|+|++|+.....+     .+.+||+......          
T Consensus        74 g~i~vwd~--~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~----------  131 (372)
T 1k8k_C           74 RNAYVWTL--KGRTW-----KPTLVILRINRAARCVRWAPNEKKFAVGSGSR-----VISICYFEQENDW----------  131 (372)
T ss_dssp             SCEEEEEE--ETTEE-----EEEEECCCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEEETTTTE----------
T ss_pred             CeEEEEEC--CCCee-----eeeEEeecCCCceeEEEECCCCCEEEEEeCCC-----EEEEEEecCCCcc----------
Confidence            86666655  44310     01222344555678889999999998866443     7888887432200          


Q ss_pred             CCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC----------
Q 039497          293 SEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD----------  362 (642)
Q Consensus       293 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~----------  362 (642)
                         ....                ........       ....+.|+|+++.|+....   ...|.++|+.          
T Consensus       132 ---~~~~----------------~~~~~~~~-------~i~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~  182 (372)
T 1k8k_C          132 ---WVCK----------------HIKKPIRS-------TVLSLDWHPNSVLLAAGSC---DFKCRIFSAYIKEVEERPAP  182 (372)
T ss_dssp             ---EEEE----------------EECTTCCS-------CEEEEEECTTSSEEEEEET---TSCEEEEECCCTTTSCCCCC
T ss_pred             ---eeee----------------eeecccCC-------CeeEEEEcCCCCEEEEEcC---CCCEEEEEcccccccccccc
Confidence               0000                00000000       1124589999998887654   3567777753          


Q ss_pred             --------CCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497          363 --------GSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK  432 (642)
Q Consensus       363 --------~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (642)
                              .++......  ...+..+.|+|+++.|+..+.       ++.+++|++..        +.     ....+..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~--------~~-----~~~~~~~  242 (372)
T 1k8k_C          183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-------DSTVCLADADK--------KM-----AVATLAS  242 (372)
T ss_dssp             BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-------TTEEEEEEGGG--------TT-----EEEEEEC
T ss_pred             cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-------CCEEEEEECCC--------Cc-----eeEEEcc
Confidence                    333322222  456889999999999888874       67899999865        22     4555555


Q ss_pred             cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC--Cccc----------------------------c-ce-----
Q 039497          433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN--GEFN----------------------------G-DI-----  476 (642)
Q Consensus       433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~----------------------------~-~~-----  476 (642)
                      +. ..+..+.|+|||+.|+..  .++  .|.+|++.+  |+..                            . ..     
T Consensus       243 ~~-~~v~~~~~~~~~~~l~~~--~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (372)
T 1k8k_C          243 ET-LPLLAVTFITESSLVAAG--HDC--FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA  317 (372)
T ss_dssp             SS-CCEEEEEEEETTEEEEEE--TTS--SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred             CC-CCeEEEEEecCCCEEEEE--eCC--eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence            54 567889999999877655  334  566666665  4210                            0 00     


Q ss_pred             -eeC-CCCCCcccceeEe-cCC---CEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497          477 -RQL-TDGPWIDTMPSWS-PKG---DLIAFSSNRHNPDNVEAFSLYVIKPDGS  523 (642)
Q Consensus       477 -~~l-~~~~~~~~~~~~s-pdG---~~l~~~~~~~~~~~~~~~~l~~~d~~~~  523 (642)
                       ..+ ..+...+..++|+ ++|   ++|+..+.++.        |.+|++.++
T Consensus       318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~--------i~~W~~~~~  362 (372)
T 1k8k_C          318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG--------MSIWDVRSL  362 (372)
T ss_dssp             -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE--------EEEEEHHHH
T ss_pred             cccccccccCCcceeEEecCCCcceeeEEEecCCCc--------eEEEEecCh
Confidence             122 2444566777765 677   88888887764        899998653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.68  E-value=3e-14  Score=147.80  Aligned_cols=270  Identities=13%  Similarity=0.072  Sum_probs=176.3

Q ss_pred             eecCCcEEEEEEeccCCceeeEEEEEeec---------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC
Q 039497          250 AFHDGKRLAVATRRKNRNFRHIEIYDLTL---------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS  320 (642)
Q Consensus       250 ~SpdG~~l~~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~  320 (642)
                      +++++..++.+...+     .+++||+..         .+...+....|+|||+.|+....++.      ..+|  .+..
T Consensus        99 ~~~s~~~l~~~~~d~-----~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~------i~iw--d~~~  165 (401)
T 4aez_A           99 LDWSNLNVVAVALER-----NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGL------VDIY--DVES  165 (401)
T ss_dssp             EEECTTSEEEEEETT-----EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSC------EEEE--ETTT
T ss_pred             EeecCCCEEEEECCC-----eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCe------EEEE--ECcC
Confidence            333445566655443     799999822         23555678899999999988765543      2223  2222


Q ss_pred             CCceeEEeeeCC--CccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEee--cCCceeeeeecCCCEEEEEEcCCC
Q 039497          321 PVKELRMLRLNG--SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIK--DRTAFYNSWSPTEKHVIYTSTGPI  395 (642)
Q Consensus       321 ~~~~~~~~~~~~--~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~--~~~~~~~~~spdg~~l~~~~~~~~  395 (642)
                      ......+.....  ....|  +++.|+....   ...|.++++..... .....  ...+..+.|+|+++.|+..+.   
T Consensus       166 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---  237 (401)
T 4aez_A          166 QTKLRTMAGHQARVGCLSW--NRHVLSSGSR---SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN---  237 (401)
T ss_dssp             CCEEEEECCCSSCEEEEEE--ETTEEEEEET---TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET---
T ss_pred             CeEEEEecCCCCceEEEEE--CCCEEEEEcC---CCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC---
Confidence            211111111111  23345  6676766554   36788889874332 22222  567889999999999988874   


Q ss_pred             cccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccc
Q 039497          396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD  475 (642)
Q Consensus       396 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~  475 (642)
                          ++.+++|++..        +.     ....+..+. ..+..+.|+|++..++.+........|.+||+.+++.   
T Consensus       238 ----d~~v~iwd~~~--------~~-----~~~~~~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~---  296 (401)
T 4aez_A          238 ----DNVVQIWDARS--------SI-----PKFTKTNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR---  296 (401)
T ss_dssp             ----TSCEEEEETTC--------SS-----EEEEECCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE---
T ss_pred             ----CCeEEEccCCC--------CC-----ccEEecCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE---
Confidence                67899999854        12     344555554 6788899999998888876422345899999998885   


Q ss_pred             eeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee-cCCCCCCCcccccccceEEcCCCC
Q 039497          476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       476 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      +..+. ....+..+.|+|+|+.|+..+...      ...|++|++.+++...+.. .++..       .+..+.|+|||+
T Consensus       297 ~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~------dg~i~v~~~~~~~~~~~~~~~~h~~-------~v~~~~~s~dg~  362 (401)
T 4aez_A          297 VNTVD-AGSQVTSLIWSPHSKEIMSTHGFP------DNNLSIWSYSSSGLTKQVDIPAHDT-------RVLYSALSPDGR  362 (401)
T ss_dssp             EEEEE-CSSCEEEEEECSSSSEEEEEECTT------TCEEEEEEEETTEEEEEEEEECCSS-------CCCEEEECTTSS
T ss_pred             EEEEe-CCCcEEEEEECCCCCeEEEEeecC------CCcEEEEecCCccceeEEEecCCCC-------CEEEEEECCCCC
Confidence            44443 445678899999999999876321      1248999998766554432 23444       578899999999


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL  592 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  592 (642)
                      +|+..+.++                 .|.+|++..++.
T Consensus       363 ~l~s~~~dg-----------------~i~iw~~~~~~~  383 (401)
T 4aez_A          363 ILSTAASDE-----------------NLKFWRVYDGDH  383 (401)
T ss_dssp             EEEEECTTS-----------------EEEEEECCC---
T ss_pred             EEEEEeCCC-----------------cEEEEECCCCcc
Confidence            998877654                 788888877653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.68  E-value=2.3e-14  Score=159.47  Aligned_cols=299  Identities=11%  Similarity=0.053  Sum_probs=191.6

Q ss_pred             eecCCcEEEEEEeccCCceeeEE----------EEEee---cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe
Q 039497          250 AFHDGKRLAVATRRKNRNFRHIE----------IYDLT---LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE  316 (642)
Q Consensus       250 ~SpdG~~l~~~~~~~~~~~~~i~----------~~d~~---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~  316 (642)
                      .+++|.++++.....+....-++          ++|..   ..+......+.|||||++|+|....+..   ....+++.
T Consensus        84 p~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~---~~~~i~v~  160 (693)
T 3iuj_A           84 PFREGRYHYFFKNDGLQNQNVLWRQQEGKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGS---DWREIHLM  160 (693)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEECTTSCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSC---CEEEEEEE
T ss_pred             CEEECCEEEEEEEcCCCceeEEEEeCCCCCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCC---ceEEEEEE
Confidence            35678888876654433332222          34441   1222344567999999999998765442   12345666


Q ss_pred             eccCCC-ceeEEeeeCCCccEEcCCCCEEEEEecC----------CCceeEEEEECCCCCe--eEEeec-C----Cceee
Q 039497          317 PVASPV-KELRMLRLNGSFPSFSPDGGLIVFNHDF----------ELNAGIKIAKSDGSKR--WTLIKD-R----TAFYN  378 (642)
Q Consensus       317 ~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~----------~~~~~l~~~d~~~~~~--~~l~~~-~----~~~~~  378 (642)
                      ++.... ............++|+ ||+.|+|....          ....+||++++.++..  +.+... .    ....+
T Consensus       161 dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~  239 (693)
T 3iuj_A          161 DVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGA  239 (693)
T ss_dssp             ETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEE
T ss_pred             ECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEE
Confidence            665443 2222222224578999 99999998764          2346799999877653  344332 2    24578


Q ss_pred             eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC
Q 039497          379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG  458 (642)
Q Consensus       379 ~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g  458 (642)
                      .|||||++|++....     ......+|.++.  +     ++..   ..+.|.... .....+ |+++|++|+|.+++++
T Consensus       240 ~~SpDg~~l~~~~~~-----~~~~~~i~~~d~--~-----~~~~---~~~~l~~~~-~~~~~~-~~~~g~~l~~~t~~~~  302 (693)
T 3iuj_A          240 TVTEDDRFLLISAAN-----STSGNRLYVKDL--S-----QENA---PLLTVQGDL-DADVSL-VDNKGSTLYLLTNRDA  302 (693)
T ss_dssp             EECTTSCEEEEEEES-----SSSCCEEEEEET--T-----STTC---CCEEEECSS-SSCEEE-EEEETTEEEEEECTTC
T ss_pred             EEcCCCCEEEEEEcc-----CCCCcEEEEEEC--C-----CCCC---ceEEEeCCC-CceEEE-EeccCCEEEEEECCCC
Confidence            999999999988742     112234555554  2     1111   456666554 333333 8899999999988754


Q ss_pred             -ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCC
Q 039497          459 -HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG  537 (642)
Q Consensus       459 -~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~  537 (642)
                       ...|+++++++++. ...+.|+.+.....  .|+++|++|++....+     +..+|++++++++..+.+.... .+  
T Consensus       303 ~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~-----g~~~l~~~d~~g~~~~~l~~p~-~~--  371 (693)
T 3iuj_A          303 PNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGYLFAEYMVD-----ATARVEQFDYEGKRVREVALPG-LG--  371 (693)
T ss_dssp             TTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTEEEEEEEET-----TEEEEEEECTTSCEEEEECCSS-SS--
T ss_pred             CCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCEEEEEEEEC-----CeeEEEEEECCCCeeEEeecCC-Cc--
Confidence             56999999987652 11245555544333  9999999999988765     4678999999988777765422 22  


Q ss_pred             CcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC
Q 039497          538 DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN  598 (642)
Q Consensus       538 ~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~  598 (642)
                           .+..+.+++|++.|++.......             ...||.+|+.+++.+.|...
T Consensus       372 -----~~~~~~~~~d~~~l~~~~ss~~t-------------P~~l~~~d~~~g~~~~l~~~  414 (693)
T 3iuj_A          372 -----SVSGFNGKHDDPALYFGFENYAQ-------------PPTLYRFEPKSGAISLYRAS  414 (693)
T ss_dssp             -----EEEECCCCTTCSCEEEEEECSSS-------------CCEEEEECTTTCCEEEEECC
T ss_pred             -----eEEeeecCCCCCEEEEEecCCCC-------------CCEEEEEECCCCeEEEEEeC
Confidence                 34567788999999988764321             24899999988887777654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.68  E-value=6.6e-15  Score=154.60  Aligned_cols=296  Identities=13%  Similarity=0.102  Sum_probs=179.2

Q ss_pred             ceEeeC-CeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCceeeEEE
Q 039497          196 PTWSGD-STIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       196 ~~wspd-g~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~  273 (642)
                      ++|+|. +.++++. ..+|...||  +..++..     .....+..+...+..++|+| ||++|+.+..+     ..|.+
T Consensus       125 l~~~P~~~~~lasG-s~dg~i~lW--d~~~~~~-----~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-----~~v~i  191 (435)
T 4e54_B          125 LAWHPTHPSTVAVG-SKGGDIMLW--NFGIKDK-----PTFIKGIGAGGSITGLKFNPLNTNQFYASSME-----GTTRL  191 (435)
T ss_dssp             EEECSSCTTCEEEE-ETTSCEEEE--CSSCCSC-----CEEECCCSSSCCCCEEEECSSCTTEEEEECSS-----SCEEE
T ss_pred             EEEeCCCCCEEEEE-eCCCEEEEE--ECCCCCc-----eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-----CEEEE
Confidence            799995 4677777 567855555  5444310     01223345666788899998 78888875443     37899


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  353 (642)
                      ||+...               .+........                .       ......+.|+|+|+.|+....   .
T Consensus       192 wd~~~~---------------~~~~~~~~~~----------------~-------~~~~~~~~~~~~~~~l~~g~~---d  230 (435)
T 4e54_B          192 QDFKGN---------------ILRVFASSDT----------------I-------NIWFCSLDVSASSRMVVTGDN---V  230 (435)
T ss_dssp             EETTSC---------------EEEEEECCSS----------------C-------SCCCCCEEEETTTTEEEEECS---S
T ss_pred             eeccCC---------------ceeEEeccCC----------------C-------CccEEEEEECCCCCEEEEEeC---C
Confidence            987211               1110000000                0       011134588999998877543   4


Q ss_pred             eeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497          354 AGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK  432 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (642)
                      ..|.++|+++.....+.. ...+..+.|+|+++.++++..      .++.+++|++..        ....  ........
T Consensus       231 g~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s------~d~~v~iwd~~~--------~~~~--~~~~~~~~  294 (435)
T 4e54_B          231 GNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS------VDQTVKIWDLRQ--------VRGK--ASFLYSLP  294 (435)
T ss_dssp             SBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE------TTSBCCEEETTT--------CCSS--SCCSBCCB
T ss_pred             CcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec------CcceeeEEeccc--------cccc--ceEEEeee
Confidence            678888988766544433 567889999999987665542      378899999854        1100  01111122


Q ss_pred             cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC------cccceeEecCCCEEEEEecCCC
Q 039497          433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW------IDTMPSWSPKGDLIAFSSNRHN  506 (642)
Q Consensus       433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~------~~~~~~~spdG~~l~~~~~~~~  506 (642)
                      +. ..+..+.|+|||++|+..+.+   ..|.+||+.+++.   ...+..+..      ......|+|++..++.......
T Consensus       295 h~-~~v~~~~~spdg~~l~s~~~D---~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  367 (435)
T 4e54_B          295 HR-HPVNAACFSPDGARLLTTDQK---SEIRVYSASQWDC---PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDP  367 (435)
T ss_dssp             CS-SCEEECCBCTTSSEEEEEESS---SCEEEEESSSSSS---EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred             cc-ccccceeECCCCCeeEEEcCC---CEEEEEECCCCcc---ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCC
Confidence            33 567788999999999887743   4799999988875   344432211      1234588999988877754321


Q ss_pred             CC----CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccce-EEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCc
Q 039497          507 PD----NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV-CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD  581 (642)
Q Consensus       507 ~~----~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  581 (642)
                      ..    ......|.+||..+++........+..       .+..+ .|||||+.|+..+ ++                 .
T Consensus       368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~-------~v~s~~~fspdg~~lasg~-d~-----------------~  422 (435)
T 4e54_B          368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS-------GISSLNEFNPMGDTLASAM-GY-----------------H  422 (435)
T ss_dssp             TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC-------CCCCEEEECTTSSCEEEEC-SS-----------------E
T ss_pred             CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC-------cEEEEEEECCCCCEEEEEc-CC-----------------c
Confidence            10    012245899999888765443323332       34455 6999999887543 32                 6


Q ss_pred             EEEEEcCCCcee
Q 039497          582 LYVVKLDGSGLR  593 (642)
Q Consensus       582 l~~~~~~~~~~~  593 (642)
                      |.+|++..++.+
T Consensus       423 i~iW~~~~gk~r  434 (435)
T 4e54_B          423 ILIWSQQEARTR  434 (435)
T ss_dssp             EEECCCC-----
T ss_pred             EEEEECCcCeee
Confidence            888888876654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.68  E-value=2e-14  Score=149.21  Aligned_cols=264  Identities=13%  Similarity=0.118  Sum_probs=176.7

Q ss_pred             ceEEEEccCCceEecccC--CCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---c
Q 039497          121 ALYSTDLKASKFTRLTPY--GVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---W  195 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~--~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~  195 (642)
                      .|+++++.+++...+...  .......+|||||++||....++            .|.+|++.+++..+....+..   .
T Consensus       114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~v~~  181 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG------------LVDIYDVESQTKLRTMAGHQARVGC  181 (401)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS------------CEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC------------eEEEEECcCCeEEEEecCCCCceEE
Confidence            577779998887665543  44456789999999999987655            799999998876555543332   3


Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      ..|  ++.++++. ..+|...+  +++.....      ....+..+...+..++|+|+|++|+....++     .+.+||
T Consensus       182 ~~~--~~~~l~~~-~~dg~i~i--~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd  245 (401)
T 4aez_A          182 LSW--NRHVLSSG-SRSGAIHH--HDVRIANH------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDN-----VVQIWD  245 (401)
T ss_dssp             EEE--ETTEEEEE-ETTSEEEE--EETTSSSC------EEEEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred             EEE--CCCEEEEE-cCCCCEEE--EecccCcc------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC-----eEEEcc
Confidence            466  55677766 45774444  45542210      4455666666788899999999998866544     788998


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG  355 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  355 (642)
                      +...              +.+...                   ..       .......+.|+|++..++..........
T Consensus       246 ~~~~--------------~~~~~~-------------------~~-------~~~~v~~~~~~p~~~~ll~~~~gs~d~~  285 (401)
T 4aez_A          246 ARSS--------------IPKFTK-------------------TN-------HNAAVKAVAWCPWQSNLLATGGGTMDKQ  285 (401)
T ss_dssp             TTCS--------------SEEEEE-------------------CC-------CSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred             CCCC--------------CccEEe-------------------cC-------CcceEEEEEECCCCCCEEEEecCCCCCE
Confidence            7321              111000                   00       0111235689999887777653234678


Q ss_pred             EEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC
Q 039497          356 IKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE  434 (642)
Q Consensus       356 l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  434 (642)
                      |.++|+.+++...... ...+..+.|+|+++.|+.+..     ..++.+.+|++..        +...   ....+..+.
T Consensus       286 i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g-----~~dg~i~v~~~~~--------~~~~---~~~~~~~h~  349 (401)
T 4aez_A          286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHG-----FPDNNLSIWSYSS--------SGLT---KQVDIPAHD  349 (401)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEEC-----TTTCEEEEEEEET--------TEEE---EEEEEECCS
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEee-----cCCCcEEEEecCC--------ccce---eEEEecCCC
Confidence            9999998877655444 667889999999999988752     2378999999875        1210   222234444


Q ss_pred             CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497          435 TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       435 ~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~  472 (642)
                       ..+..+.|+|||++|+..+.   +..|.+|++.+++.
T Consensus       350 -~~v~~~~~s~dg~~l~s~~~---dg~i~iw~~~~~~~  383 (401)
T 4aez_A          350 -TRVLYSALSPDGRILSTAAS---DENLKFWRVYDGDH  383 (401)
T ss_dssp             -SCCCEEEECTTSSEEEEECT---TSEEEEEECCC---
T ss_pred             -CCEEEEEECCCCCEEEEEeC---CCcEEEEECCCCcc
Confidence             67788999999999887763   34899999988774

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.68  E-value=2e-14  Score=151.25  Aligned_cols=148  Identities=13%  Similarity=0.166  Sum_probs=99.6

Q ss_pred             CccEEcCCC-CEEEEEecCCCceeEEEEECCCCCe-----eEEee-cC------------CceeeeeecCCCEEEEEEcC
Q 039497          333 SFPSFSPDG-GLIVFNHDFELNAGIKIAKSDGSKR-----WTLIK-DR------------TAFYNSWSPTEKHVIYTSTG  393 (642)
Q Consensus       333 ~~~~~spdg-~~l~~~~~~~~~~~l~~~d~~~~~~-----~~l~~-~~------------~~~~~~~spdg~~l~~~~~~  393 (642)
                      ..+.|+|+| +.|+....   ...|.++|+..++.     ..+.. ..            .+..+.|+|+|+.|+..+  
T Consensus       230 ~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--  304 (447)
T 3dw8_B          230 TAAEFHPNSCNTFVYSSS---KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD--  304 (447)
T ss_dssp             EEEEECSSCTTEEEEEET---TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE--
T ss_pred             EEEEECCCCCcEEEEEeC---CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee--
Confidence            356899999 87777654   35788889888764     23322 22            788999999999988776  


Q ss_pred             CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCC---------------ccCcEECCCCCeEEEEeCCCC
Q 039497          394 PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGN---------------NAFPSCSPDGKFLVFRSGRSG  458 (642)
Q Consensus       394 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~~~SpDg~~l~~~~~~~g  458 (642)
                            .+.+++|++..  .      +.    ....+..+. ..               ...+.|+|||++|+..+.   
T Consensus       305 ------~~~v~iwd~~~--~------~~----~~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~---  362 (447)
T 3dw8_B          305 ------YLSVKVWDLNM--E------NR----PVETYQVHE-YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY---  362 (447)
T ss_dssp             ------SSEEEEEETTC--C------SS----CSCCEESCG-GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS---
T ss_pred             ------CCeEEEEeCCC--C------cc----ccceeeccc-cccccccccccccccccceEEEECCCCCEEEEecc---
Confidence                  37899999854  1      21    222232222 11               123799999999976653   


Q ss_pred             ceeEEEEECCCCccccceeeCCC---------------------------------CCCcccceeEecCCCEEEEEecCC
Q 039497          459 HKNLFVLDAVNGEFNGDIRQLTD---------------------------------GPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       459 ~~~l~~~d~~~g~~~~~~~~l~~---------------------------------~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      +..|++||+.+++.    ..+..                                 ....+..++|+|+|+.|++.+.+.
T Consensus       363 dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          363 NNFFRMFDRNTKRD----ITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             TTEEEEEETTTCCE----EEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             CCEEEEEEcCCCcc----eeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence            34899999998874    22211                                 112345689999999999887765


Q ss_pred             CCCCCCceeEEEEeC
Q 039497          506 NPDNVEAFSLYVIKP  520 (642)
Q Consensus       506 ~~~~~~~~~l~~~d~  520 (642)
                               +|+|..
T Consensus       439 ---------~~~~~~  444 (447)
T 3dw8_B          439 ---------LYIFQD  444 (447)
T ss_dssp             ---------EEEEEC
T ss_pred             ---------eeeecc
Confidence                     888864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.68  E-value=6.6e-15  Score=148.70  Aligned_cols=286  Identities=16%  Similarity=0.121  Sum_probs=179.2

Q ss_pred             eeCCCCCccccceeecC-CcEEEEEEeccCCceeeEEEEEeec-------------CCCCcccCCeecCCCCEEEEEEee
Q 039497          237 RVTPPGVHCFTPAAFHD-GKRLAVATRRKNRNFRHIEIYDLTL-------------NPNFHHYNPFVSANSEFIGYHRFR  302 (642)
Q Consensus       237 ~l~~~~~~~~~~~~Spd-G~~l~~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~~~~~spDg~~l~~~~~~  302 (642)
                      .|.++...+..++|+|+ +++|+....++     .|.+||+..             .+...+....|+|||+.|+....+
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~-----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDK-----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTS-----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCC-----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            46677778899999998 57777755444     899999832             234556778899999998887554


Q ss_pred             cCCCCCCcccceEeeccCCCceeEEeeeC--CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCcee
Q 039497          303 GESTEGQSTIPHLEPVASPVKELRMLRLN--GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFY  377 (642)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~  377 (642)
                      +.      ..  +................  .....++++++.|+....   ...+.++++..........   ...+..
T Consensus       108 ~~------i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---d~~~~~~d~~~~~~~~~~~~~~~~~v~~  176 (340)
T 4aow_A          108 GT------LR--LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR---DKTIKLWNTLGVCKYTVQDESHSEWVSC  176 (340)
T ss_dssp             SE------EE--EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred             cc------ce--EEeecccceeeeecCCCCceeEEEEeecCccceeecC---CCeEEEEEeCCCceEEEEeccccCcccc
Confidence            43      11  11222111111111111  124467899998877654   3567777877655443332   345677


Q ss_pred             eeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC
Q 039497          378 NSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS  457 (642)
Q Consensus       378 ~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~  457 (642)
                      +.|++++...++++.     ..+..+++|++..        ..     ....+..+. ..+..++|+|||++|+..+.  
T Consensus       177 ~~~~~~~~~~~~~s~-----~~d~~i~i~d~~~--------~~-----~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~--  235 (340)
T 4aow_A          177 VRFSPNSSNPIIVSC-----GWDKLVKVWNLAN--------CK-----LKTNHIGHT-GYLNTVTVSPDGSLCASGGK--  235 (340)
T ss_dssp             EEECSCSSSCEEEEE-----ETTSCEEEEETTT--------TE-----EEEEECCCS-SCEEEEEECTTSSEEEEEET--
T ss_pred             eEEccCCCCcEEEEE-----cCCCEEEEEECCC--------Cc-----eeeEecCCC-CcEEEEEECCCCCEEEEEeC--
Confidence            889888654333221     2367888998754        12     344455454 67788999999999887764  


Q ss_pred             CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC-CC
Q 039497          458 GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE-GS  536 (642)
Q Consensus       458 g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~-~~  536 (642)
                       +..|.+||+.+++.   +..+.. ...+..+.|+|++..++... ++        .|++||+.++........... ..
T Consensus       236 -Dg~i~iwd~~~~~~---~~~~~~-~~~v~~~~~~~~~~~~~~~~-d~--------~i~iwd~~~~~~~~~~~~~~~~~~  301 (340)
T 4aow_A          236 -DGQAMLWDLNEGKH---LYTLDG-GDIINALCFSPNRYWLCAAT-GP--------SIKIWDLEGKIIVDELKQEVISTS  301 (340)
T ss_dssp             -TCEEEEEETTTTEE---EEEEEC-SSCEEEEEECSSSSEEEEEE-TT--------EEEEEETTTTEEEEEECCC-----
T ss_pred             -CCeEEEEEeccCce---eeeecC-CceEEeeecCCCCceeeccC-CC--------EEEEEECCCCeEEEeccccceeee
Confidence             34899999998875   444443 34567789999987665544 33        299999987654322211000 00


Q ss_pred             CCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          537 GDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       537 ~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                      .......+..++|+|||++|+..+.++                 .|.+|++.+|
T Consensus       302 ~~~h~~~v~~l~~s~dg~~l~sgs~Dg-----------------~v~iW~~~tG  338 (340)
T 4aow_A          302 SKAEPPQCTSLAWSADGQTLFAGYTDN-----------------LVRVWQVTIG  338 (340)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEETTS-----------------CEEEEEEEC-
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCC-----------------EEEEEeCCCc
Confidence            001112577899999999998877664                 6777777665

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.67  E-value=1.9e-15  Score=161.30  Aligned_cols=323  Identities=10%  Similarity=-0.003  Sum_probs=174.5

Q ss_pred             EeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecC------CcEEEEEEeccCCceeeE
Q 039497          198 WSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHD------GKRLAVATRRKNRNFRHI  271 (642)
Q Consensus       198 wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Spd------G~~l~~~~~~~~~~~~~i  271 (642)
                      ++|++.++++. ..++..+||.++......     .....+..+...+..++|+|+      +..|+.+..++     .|
T Consensus       169 ~~~~~~~laS~-s~D~tI~iWd~~~~~~~~-----~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg-----tv  237 (524)
T 2j04_B          169 LNEHLEMFDKE-KHSSCIQIFKMNTSTLHC-----VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEG-----TI  237 (524)
T ss_dssp             --------------CEEEEEEEEETTTCCE-----EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTS-----CE
T ss_pred             cchhhhhhccC-CCCceEEEEEccCCCCCc-----eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCC-----eE
Confidence            36888777665 567877888765432100     001123334445777889986      56788765544     89


Q ss_pred             EEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC
Q 039497          272 EIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE  351 (642)
Q Consensus       272 ~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  351 (642)
                      ++||+........          . .+. . ..      ..   ..+....       .....++|++++ .|+..+.  
T Consensus       238 rlWd~~~~~~~~~----------~-~~~-~-~~------p~---~~l~~h~-------~~v~sv~~s~~~-~lasgs~--  285 (524)
T 2j04_B          238 NFLEIIDNATDVH----------V-FKM-C-EK------PS---LTLSLAD-------SLITTFDFLSPT-TVVCGFK--  285 (524)
T ss_dssp             EEEECCCCSSSSS----------E-EEC-C-CS------CS---EEECCTT-------TCEEEEEESSSS-EEEEEET--
T ss_pred             EEEEcCCCccccc----------c-cee-e-cC------ce---EEEEcCC-------CCEEEEEecCCC-eEEEEeC--
Confidence            9999843211000          0 000 0 00      00   0000000       011245788865 5665543  


Q ss_pred             CceeEEEEECCCCC-eeE-Eee-cCCceee--eeecCC-CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcccc
Q 039497          352 LNAGIKIAKSDGSK-RWT-LIK-DRTAFYN--SWSPTE-KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC  425 (642)
Q Consensus       352 ~~~~l~~~d~~~~~-~~~-l~~-~~~~~~~--~~spdg-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  425 (642)
                       ...|.++|+.++. ... +.. ...+..+  .|+|+| +.|+.++.       ++.++||++..        ..     
T Consensus       286 -DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~-------D~tvklWD~~~--------~~-----  344 (524)
T 2j04_B          286 -NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV-------DGYFYIFNPKD--------IA-----  344 (524)
T ss_dssp             -TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET-------TSEEEEECGGG--------HH-----
T ss_pred             -CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc-------CCeEEEEECCC--------CC-----
Confidence             4678888988653 222 222 5667777  678998 66776663       78999999854        11     


Q ss_pred             ceEEccccCC-CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497          426 DVKILTKEET-GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR  504 (642)
Q Consensus       426 ~~~~l~~~~~-~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~  504 (642)
                      ....+..... ..+..++|+||++.|+..+.   ...|.+||+.++..   +..+..+...+..++|||+|+.|+..+.+
T Consensus       345 ~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~---d~tv~lwd~~~~~~---~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D  418 (524)
T 2j04_B          345 TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG---ASSLRAVPSRAAFA---VHPLVSRETTITAIGVSRLHPMVLAGSAD  418 (524)
T ss_dssp             HHCEEEEECSCCSCCCEEEETTTTEEEEECS---SSEEEEEETTCTTC---CEEEEECSSCEEEEECCSSCCBCEEEETT
T ss_pred             cccccccccccCcccceEeCCCcCeEEEeCC---CCcEEEEECccccc---ceeeecCCCceEEEEeCCCCCeEEEEECC
Confidence            2222322221 23567899999998776653   33799999988875   46676777788999999999998888776


Q ss_pred             CCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497          505 HNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY  583 (642)
Q Consensus       505 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  583 (642)
                      +.        |.+||+..+......... ...     ...+..++|||||+.+.+  .+ ..               .++
T Consensus       419 gt--------v~lwd~~~~~~~~~~~~~~~~~-----~~~v~~v~~sp~g~~~~~--~~-~~---------------~~~  467 (524)
T 2j04_B          419 GS--------LIITNAARRLLHGIKNSSATQK-----SLRLWKWDYSIKDDKYRI--DS-SY---------------EVY  467 (524)
T ss_dssp             TE--------EECCBSCSSTTTCC------CC-----CCEEEECBCCSSSCEEEE--CC-CC---------------CCC
T ss_pred             CE--------EEEEechHhhccccccCcccee-----eeEEEEeccCCCCCeEEc--cC-Cc---------------eec
Confidence            64        888998654221111000 000     002457889999995532  22 11               455


Q ss_pred             EEEcCCCceeeccCCCCCCCCcEEecCCc---eEEeecCCC
Q 039497          584 VVKLDGSGLRRLTWNGYENGTPAWHPGNQ---LDLGKLRLE  621 (642)
Q Consensus       584 ~~~~~~~~~~~lt~~~~~~~~~~~s~dg~---~~~~~~~~~  621 (642)
                      .+...+..+..|..+...+..++|+|+++   ++++....|
T Consensus       468 ~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g  508 (524)
T 2j04_B          468 PLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG  508 (524)
T ss_dssp             C-------------CCCSCCCEEECCSTTTTTEEEEECTTS
T ss_pred             ccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCc
Confidence            55555666777888888889999999964   666654433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.67  E-value=2.5e-14  Score=147.30  Aligned_cols=289  Identities=14%  Similarity=0.100  Sum_probs=175.9

Q ss_pred             ceEeeCC-eEEEEEecCCCceEEEEEecCCCcccccCCccceeeC--CCCCccccceeec-CCcEEEEEEeccCCceeeE
Q 039497          196 PTWSGDS-TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT--PPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHI  271 (642)
Q Consensus       196 ~~wspdg-~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i  271 (642)
                      ++|+|++ .++++. ..+|...||  +..++.       ....+.  .+...+..++|+| ++++|+....++     .+
T Consensus        79 ~~~~~~~~~~l~s~-~~dg~i~iw--d~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-----~i  143 (383)
T 3ei3_B           79 LEWHPTHPTTVAVG-SKGGDIILW--DYDVQN-------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG-----AT  143 (383)
T ss_dssp             EEECSSCTTEEEEE-EBTSCEEEE--ETTSTT-------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT-----EE
T ss_pred             EEECCCCCCEEEEE-cCCCeEEEE--eCCCcc-------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC-----EE
Confidence            6999999 788877 457755555  555542       233333  3556788899999 677777755443     78


Q ss_pred             EEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC
Q 039497          272 EIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE  351 (642)
Q Consensus       272 ~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  351 (642)
                      .+||+..               +.+....                .......       ....+.|+|+++.|+....  
T Consensus       144 ~iwd~~~---------------~~~~~~~----------------~~~~~~~-------~v~~~~~~~~~~~l~~~~~--  183 (383)
T 3ei3_B          144 TLRDFSG---------------SVIQVFA----------------KTDSWDY-------WYCCVDVSVSRQMLATGDS--  183 (383)
T ss_dssp             EEEETTS---------------CEEEEEE----------------CCCCSSC-------CEEEEEEETTTTEEEEEET--
T ss_pred             EEEECCC---------------CceEEEe----------------ccCCCCC-------CeEEEEECCCCCEEEEECC--
Confidence            8888721               1111110                0000000       1124589999998887654  


Q ss_pred             CceeEEEEECCCCCeeEEee-cCCceeeeeecCCC-EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497          352 LNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEK-HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI  429 (642)
Q Consensus       352 ~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  429 (642)
                       ...|.++|+.+.....+.. ...+..+.|+|+++ .|+..+       .++.+++|++.....     .+ .   ....
T Consensus       184 -d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~-----~~-~---~~~~  246 (383)
T 3ei3_B          184 -TGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS-------VDATVKLWDLRNIKD-----KN-S---YIAE  246 (383)
T ss_dssp             -TSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEE-------TTSEEEEEEGGGCCS-----TT-C---EEEE
T ss_pred             -CCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEe-------CCCEEEEEeCCCCCc-----cc-c---eEEE
Confidence             3688899986555444443 66788999999999 565555       378999999865100     01 0   2222


Q ss_pred             ccccCCCCccCcEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC------CcccceeEecCCCEEEEEe
Q 039497          430 LTKEETGNNAFPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP------WIDTMPSWSPKGDLIAFSS  502 (642)
Q Consensus       430 l~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~------~~~~~~~~spdG~~l~~~~  502 (642)
                      + .+. ..+..+.|+| ||++|+..+.   +..|.+||+.+++.   +..+..+.      .......|+|++..+++..
T Consensus       247 ~-~~~-~~v~~~~~s~~~~~~l~~~~~---d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  318 (383)
T 3ei3_B          247 M-PHE-KPVNAAYFNPTDSTKLLTTDQ---RNEIRVYSSYDWSK---PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR  318 (383)
T ss_dssp             E-ECS-SCEEEEEECTTTSCEEEEEES---SSEEEEEETTBTTS---CSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred             e-cCC-CceEEEEEcCCCCCEEEEEcC---CCcEEEEECCCCcc---ccccccccccccccccceEEeccCCCCceEEEe
Confidence            3 344 6788899999 9999988774   34899999988775   33332111      1112246777776665443


Q ss_pred             cCCCC-CCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497          503 NRHNP-DNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG  580 (642)
Q Consensus       503 ~~~~~-~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  580 (642)
                      ..... -......|++||+.+++....... ....       .+..+.|+|||+.|+..+ ++                 
T Consensus       319 s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~-------~~~~~~~s~~g~~l~s~s-d~-----------------  373 (383)
T 3ei3_B          319 YPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAG-------IISLNKFSPTGDVLASGM-GF-----------------  373 (383)
T ss_dssp             BCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCS-------CCCEEEECTTSSEEEEEE-TT-----------------
T ss_pred             cCCcccccCCCCeEEEEecCCCceeeeecCCCCCc-------eEEEEEEecCccEEEEec-CC-----------------
Confidence            21000 000223499999988776443321 1222       345669999999887775 43                 


Q ss_pred             cEEEEEcCC
Q 039497          581 DLYVVKLDG  589 (642)
Q Consensus       581 ~l~~~~~~~  589 (642)
                      .|.+|++++
T Consensus       374 ~i~iw~~~~  382 (383)
T 3ei3_B          374 NILIWNRED  382 (383)
T ss_dssp             EEEEEECC-
T ss_pred             cEEEEecCC
Confidence            688888754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.67  E-value=1.4e-13  Score=145.64  Aligned_cols=322  Identities=11%  Similarity=0.118  Sum_probs=201.0

Q ss_pred             eeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCceEEEEEec
Q 039497          146 SVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGWWSIFRVSF  222 (642)
Q Consensus       146 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~  222 (642)
                      .+++++++||....++            .|.+|++.+++.......+..   .+.|+|++ ++++. ..+|...+|  ++
T Consensus       127 ~~~~~~~~l~sgs~dg------------~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~-s~dg~i~vw--d~  190 (464)
T 3v7d_B          127 CLQFEDNYVITGADDK------------MIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSG-STDRTVRVW--DI  190 (464)
T ss_dssp             EEEEETTEEEEEETTS------------CEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEE-ETTSCEEEE--ET
T ss_pred             EEEECCCEEEEEcCCC------------cEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEE-eCCCCEEEE--EC
Confidence            4677899999887766            799999998876555443332   35899998 55555 567855554  55


Q ss_pred             CCCcccccCCccceeeCCCCCccccceee--cCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEE
Q 039497          223 PENLEFLGFPIAPTRVTPPGVHCFTPAAF--HDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHR  300 (642)
Q Consensus       223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~S--pdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~  300 (642)
                      .++.       ....+..+...+..++++  +++++|+....++     .+.+||+..........  ...+.. +.+..
T Consensus       191 ~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~-----~i~vwd~~~~~~~~~~~--~~~~~~-~~~~~  255 (464)
T 3v7d_B          191 KKGC-------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN-----TLHVWKLPKESSVPDHG--EEHDYP-LVFHT  255 (464)
T ss_dssp             TTTE-------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTS-----CEEEEECCCCCCC--------CCSS-EEESC
T ss_pred             CCCc-------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCC-----cEEEeeCCCCccccccc--ccCCcc-eEeec
Confidence            6653       445556566667777776  6888888865544     89999984332111000  000000 00000


Q ss_pred             eecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceee
Q 039497          301 FRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYN  378 (642)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~  378 (642)
                      ....       ......         ..........++++++.++....   ...|.++|+.+++......  ...+..+
T Consensus       256 ~~~~-------~~~~~~---------~~~~~~~v~~~~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~  316 (464)
T 3v7d_B          256 PEEN-------PYFVGV---------LRGHMASVRTVSGHGNIVVSGSY---DNTLIVWDVAQMKCLYILSGHTDRIYST  316 (464)
T ss_dssp             GGGC-------TTEEEE---------ECCCSSCEEEEEEETTEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             cCCC-------eEEEEE---------ccCccceEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEecCCCCCEEEE
Confidence            0000       000000         11111123356888998888664   3678889998776544433  5668899


Q ss_pred             eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC
Q 039497          379 SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG  458 (642)
Q Consensus       379 ~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g  458 (642)
                      .|+|+++.|+..+.       ++.+++|++..        +.     ....+..+. ..+..+.|+  +++|+..+.   
T Consensus       317 ~~~~~~~~l~sg~~-------dg~i~vwd~~~--------~~-----~~~~~~~h~-~~v~~~~~~--~~~l~s~s~---  370 (464)
T 3v7d_B          317 IYDHERKRCISASM-------DTTIRIWDLEN--------GE-----LMYTLQGHT-ALVGLLRLS--DKFLVSAAA---  370 (464)
T ss_dssp             EEETTTTEEEEEET-------TSCEEEEETTT--------TE-----EEEEECCCS-SCEEEEEEC--SSEEEEEET---
T ss_pred             EEcCCCCEEEEEeC-------CCcEEEEECCC--------Cc-----EEEEEeCCC-CcEEEEEEc--CCEEEEEeC---
Confidence            99999999988774       68899999854        22     455555555 667777776  567777663   


Q ss_pred             ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497          459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD  538 (642)
Q Consensus       459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  538 (642)
                      +..|.+||+.+++.   .... ..........|+|+|++|+..+ ++        .|.+||+.+++...........   
T Consensus       371 dg~v~vwd~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg--------~i~iwd~~~g~~~~~~~~~~~~---  434 (464)
T 3v7d_B          371 DGSIRGWDANDYSR---KFSY-HHTNLSAITTFYVSDNILVSGS-EN--------QFNIYNLRSGKLVHANILKDAD---  434 (464)
T ss_dssp             TSEEEEEETTTCCE---EEEE-ECTTCCCEEEEEECSSEEEEEE-TT--------EEEEEETTTCCEEESCTTTTCS---
T ss_pred             CCcEEEEECCCCce---eeee-cCCCCccEEEEEeCCCEEEEec-CC--------eEEEEECCCCcEEehhhccCCC---
Confidence            34799999998764   2222 2334456679999999888777 33        2999999988765432223333   


Q ss_pred             cccccccceEEcCCCCEEEEEEecCCc
Q 039497          539 VDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       539 ~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                          .+..+.|+  ++.++++..+++.
T Consensus       435 ----~v~~v~~~--~~~l~~~~~~~g~  455 (464)
T 3v7d_B          435 ----QIWSVNFK--GKTLVAAVEKDGQ  455 (464)
T ss_dssp             ----EEEEEEEE--TTEEEEEEEETTE
T ss_pred             ----cEEEEEec--CCEEEEEEEeCCe
Confidence                56778885  6777777666543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.66  E-value=3.4e-14  Score=149.43  Aligned_cols=321  Identities=9%  Similarity=0.118  Sum_probs=176.3

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCccc--ccCCccceeeCCCC------------CccccceeecCC--cEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEF--LGFPIAPTRVTPPG------------VHCFTPAAFHDG--KRLA  258 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~------------~~~~~~~~SpdG--~~l~  258 (642)
                      .++|+|||.++++. ..+|...||.+........  .........+..+.            ..+..++|+|++  ..|+
T Consensus        33 ~v~~s~~g~~la~g-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~  111 (447)
T 3dw8_B           33 TVEFNHSGELLATG-DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL  111 (447)
T ss_dssp             EEEECSSSSEEEEE-ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred             EEEECCCCCEEEEE-cCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence            36999999888887 5678666666543220000  00000123444554            568889999998  7788


Q ss_pred             EEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC--CCcee-EE---eeeCC
Q 039497          259 VATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS--PVKEL-RM---LRLNG  332 (642)
Q Consensus       259 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~---~~~~~  332 (642)
                      ....++     .+.+||+...............+|......    ..  .......+.....  ..... ..   .....
T Consensus       112 s~s~d~-----~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          112 LSTNDK-----TIKLWKISERDKRPEGYNLKEEDGRYRDPT----TV--TTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             EEECSS-----CEEEEEEEEEEEEEECCSCC--------CC----CC--CSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             EeCCCC-----eEEEEecccccCCcceecccCccccccCcc----cc--cceEeccccchheeeeccceEEeccCCCcce
Confidence            765444     899999843110000000000111000000    00  0000000000000  00000 00   01112


Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCC-CCeeEEe---------ecCCceeeeeecCC-CEEEEEEcCCCcccCCC
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKRWTLI---------KDRTAFYNSWSPTE-KHVIYTSTGPIFQSERA  401 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~~~l~---------~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~  401 (642)
                      ..+.|+|+|+.|+.. .   ...|.++|+.. +....+.         ....+..+.|+|++ +.|+..+.       ++
T Consensus       181 ~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-------dg  249 (447)
T 3dw8_B          181 NSISINSDYETYLSA-D---DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS-------KG  249 (447)
T ss_dssp             CEEEECTTSSEEEEE-C---SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET-------TS
T ss_pred             EEEEEcCCCCEEEEe-C---CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC-------CC
Confidence            467899999988874 2   46788889883 3333321         14558899999999 77777764       78


Q ss_pred             eEEEEEEEeecCCCCCCCCCccccceEEccccCC-----------CCccCcEECCCCCeEEEEeCCCCceeEEEEECCC-
Q 039497          402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEET-----------GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN-  469 (642)
Q Consensus       402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-  469 (642)
                      .+++|++..        +. ........+..+..           ..+..+.|+|||++|+..+.    ..|.+||+.+ 
T Consensus       250 ~i~iwd~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~iwd~~~~  316 (447)
T 3dw8_B          250 TIRLCDMRA--------SA-LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKVWDLNME  316 (447)
T ss_dssp             CEEEEETTT--------CS-SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEEEETTCC
T ss_pred             eEEEEECcC--------Cc-cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC----CeEEEEeCCCC
Confidence            899999865        11 00001344444431           16778999999999987764    4899999986 


Q ss_pred             CccccceeeCCCCCCc---------------ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497          470 GEFNGDIRQLTDGPWI---------------DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE  534 (642)
Q Consensus       470 g~~~~~~~~l~~~~~~---------------~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~  534 (642)
                      ++.   +..+..+...               ...++|+|||++|+..+.++.        |++||+.+++...+......
T Consensus       317 ~~~---~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~--------v~iwd~~~~~~~~~~~~~~~  385 (447)
T 3dw8_B          317 NRP---VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF--------FRMFDRNTKRDITLEASREN  385 (447)
T ss_dssp             SSC---SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE--------EEEEETTTCCEEEEECCSTT
T ss_pred             ccc---cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE--------EEEEEcCCCcceeeeecccc
Confidence            554   3444333211               112799999999977776653        99999998876544321100


Q ss_pred             CC------------------C-----Ccc-cccccceEEcCCCCEEEEEEec
Q 039497          535 GS------------------G-----DVD-RERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       535 ~~------------------~-----~~~-~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      ..                  .     ..+ ...+..++|+|+|..|++.+.+
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~  437 (447)
T 3dw8_B          386 NKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN  437 (447)
T ss_dssp             CCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred             cccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc
Confidence            00                  0     000 1145679999999999887654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.66  E-value=8.3e-14  Score=140.54  Aligned_cols=287  Identities=13%  Similarity=0.059  Sum_probs=178.7

Q ss_pred             ecccCCCccCCceeCCC-CcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCce-----eEeecCC---CcceEeeCCeE
Q 039497          134 RLTPYGVVDYSPSVSYS-GKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKR-----VIVCERG---GWPTWSGDSTI  204 (642)
Q Consensus       134 ~lt~~~~~~~~~~~SPD-G~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-----~l~~~~~---~~~~wspdg~~  204 (642)
                      .|..+.......+|||| |++||..+.+.            .|.+|++..++..     +....+.   ....|+|||++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~------------~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~  100 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDK------------TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF  100 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTS------------CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCC------------eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE
Confidence            35566777778899998 68898887666            6889998876532     1111122   24599999998


Q ss_pred             EEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcc
Q 039497          205 YFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHH  284 (642)
Q Consensus       205 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~  284 (642)
                      +++. ..++  .|..++.....       ................++++++.|+....++     .+.+||+...     
T Consensus       101 l~s~-~~d~--~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-----~~~~~d~~~~-----  160 (340)
T 4aow_A          101 ALSG-SWDG--TLRLWDLTTGT-------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK-----TIKLWNTLGV-----  160 (340)
T ss_dssp             EEEE-ETTS--EEEEEETTTTE-------EEEEEECCSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSC-----
T ss_pred             EEEE-cccc--cceEEeecccc-------eeeeecCCCCceeEEEEeecCccceeecCCC-----eEEEEEeCCC-----
Confidence            8887 5567  45555555542       2233333333455566788999888755443     6677765110     


Q ss_pred             cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCC
Q 039497          285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGS  364 (642)
Q Consensus       285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~  364 (642)
                                ....                 .........+       ....|++++...+++.. .....|.++++..+
T Consensus       161 ----------~~~~-----------------~~~~~~~~~v-------~~~~~~~~~~~~~~~s~-~~d~~i~i~d~~~~  205 (340)
T 4aow_A          161 ----------CKYT-----------------VQDESHSEWV-------SCVRFSPNSSNPIIVSC-GWDKLVKVWNLANC  205 (340)
T ss_dssp             ----------EEEE-----------------ECSSSCSSCE-------EEEEECSCSSSCEEEEE-ETTSCEEEEETTTT
T ss_pred             ----------ceEE-----------------EEeccccCcc-------cceEEccCCCCcEEEEE-cCCCEEEEEECCCC
Confidence                      0000                 0000000111       12356766543222211 22356888898887


Q ss_pred             CeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE
Q 039497          365 KRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS  442 (642)
Q Consensus       365 ~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  442 (642)
                      +......  ...+..+.|+||++.|+..+.       ++.+.+|++..        ..     ....+...  ..+..+.
T Consensus       206 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-------Dg~i~iwd~~~--------~~-----~~~~~~~~--~~v~~~~  263 (340)
T 4aow_A          206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGK-------DGQAMLWDLNE--------GK-----HLYTLDGG--DIINALC  263 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEET-------TCEEEEEETTT--------TE-----EEEEEECS--SCEEEEE
T ss_pred             ceeeEecCCCCcEEEEEECCCCCEEEEEeC-------CCeEEEEEecc--------Cc-----eeeeecCC--ceEEeee
Confidence            6554443  556889999999999888764       78899998754        11     33333332  4667789


Q ss_pred             ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---------CCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497          443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT---------DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF  513 (642)
Q Consensus       443 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~---------~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~  513 (642)
                      |+|++..++...+    ..|.+||+.++..   +..+.         .+...+..++|+|||++|+..+.++.       
T Consensus       264 ~~~~~~~~~~~~d----~~i~iwd~~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~-------  329 (340)
T 4aow_A          264 FSPNRYWLCAATG----PSIKIWDLEGKII---VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL-------  329 (340)
T ss_dssp             ECSSSSEEEEEET----TEEEEEETTTTEE---EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC-------
T ss_pred             cCCCCceeeccCC----CEEEEEECCCCeE---EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE-------
Confidence            9999876655442    3789999987654   23222         23445677899999999988887765       


Q ss_pred             eEEEEeCCCCc
Q 039497          514 SLYVIKPDGSG  524 (642)
Q Consensus       514 ~l~~~d~~~~~  524 (642)
                       |++||+.+|.
T Consensus       330 -v~iW~~~tGt  339 (340)
T 4aow_A          330 -VRVWQVTIGT  339 (340)
T ss_dssp             -EEEEEEEC--
T ss_pred             -EEEEeCCCcC
Confidence             9999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.66  E-value=1.9e-15  Score=155.31  Aligned_cols=231  Identities=13%  Similarity=0.133  Sum_probs=154.7

Q ss_pred             CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe--e--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          332 GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI--K--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       332 ~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~--~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      ...+.|+|||++|+....   ...|.++++.++....+.  .  ...+..+.|+|+++.|+..+.       ++.+++|+
T Consensus        14 v~~~~~s~~g~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-------d~~v~vwd   83 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTA---TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ-------DRNAYVYE   83 (377)
T ss_dssp             CSCCEECSSSSEEECCCS---SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET-------TSSEEEC-
T ss_pred             EEEEEECCCCCEEEEecC---CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC-------CCeEEEEE
Confidence            356799999998877533   356666677665322221  1  556889999999999988874       68899999


Q ss_pred             EEeecCCCCCCCC-CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCc
Q 039497          408 VSFQLDPSDDNNR-EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWI  485 (642)
Q Consensus       408 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~  485 (642)
                      +..  .      . ..   ....+..+. ..+..+.|+|||++|+..+..   ..|.+||+.+++.......+.. +...
T Consensus        84 ~~~--~------~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~h~~~  148 (377)
T 3dwl_C           84 KRP--D------GTWK---QTLVLLRLN-RAATFVRWSPNEDKFAVGSGA---RVISVCYFEQENDWWVSKHLKRPLRST  148 (377)
T ss_dssp             -------------CCC---CEEECCCCS-SCEEEEECCTTSSCCEEEESS---SCEEECCC-----CCCCEEECSSCCSC
T ss_pred             cCC--C------Ccee---eeeEecccC-CceEEEEECCCCCEEEEEecC---CeEEEEEECCcccceeeeEeecccCCC
Confidence            976  2      1 00   234444454 678889999999999888743   3788889887651001355555 6677


Q ss_pred             ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc----------------eEEeeecCCCCCCCcccccccceEE
Q 039497          486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG----------------LRRIHVAGPEGSGDVDRERINHVCF  549 (642)
Q Consensus       486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~----------------~~~l~~~~~~~~~~~~~~~~~~~~~  549 (642)
                      +..++|+|+|++|+..+.++.        |++||+..++                .+.+....+..       .+..+.|
T Consensus       149 v~~~~~~~~~~~l~~~~~d~~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~  213 (377)
T 3dwl_C          149 ILSLDWHPNNVLLAAGCADRK--------AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG-------WVHAVGF  213 (377)
T ss_dssp             EEEEEECTTSSEEEEEESSSC--------EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSS-------SEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEeCCCE--------EEEEEEEecccCCCccccccccccchhhhhhcccCCc-------eEEEEEE
Confidence            888999999999998887764        8999985332                11222113333       5788999


Q ss_pred             cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-----eeeccCCCCCCCCcEEecCCceEEeecC
Q 039497          550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-----LRRLTWNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       550 S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~lt~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      +|||++|+..+.++                 .|.+|++..+.     +..+..+...+..++|+|||+++++...
T Consensus       214 sp~~~~l~~~~~d~-----------------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  271 (377)
T 3dwl_C          214 SPSGNALAYAGHDS-----------------SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYN  271 (377)
T ss_dssp             CTTSSCEEEEETTT-----------------EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESS
T ss_pred             CCCCCEEEEEeCCC-----------------cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC
Confidence            99999988887654                 67777877665     3455566666789999999999887643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.66  E-value=1.1e-14  Score=151.23  Aligned_cols=282  Identities=10%  Similarity=0.087  Sum_probs=176.1

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCceeeEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~  273 (642)
                      ..+++|+...++.....+|...||.++..+..     ......+..+...+..++|+| +++.|+....++     .|.+
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg-----~v~v  108 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDC-----TVMV  108 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTS-----EEEE
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCC-----eEEE
Confidence            45788886544443355675556554322210     002233455666788899999 899888865443     8999


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCC-EEEEEecCCC
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGG-LIVFNHDFEL  352 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~  352 (642)
                      ||+........                                 .......+.........+.|+|+|+ .|+....   
T Consensus       109 w~~~~~~~~~~---------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~---  152 (402)
T 2aq5_A          109 WEIPDGGLVLP---------------------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC---  152 (402)
T ss_dssp             EECCTTCCSSC---------------------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEET---
T ss_pred             EEccCCCCccc---------------------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcC---
Confidence            99843221000                                 0000000000001113568999984 5555443   


Q ss_pred             ceeEEEEECCCCCeeEEe--e--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497          353 NAGIKIAKSDGSKRWTLI--K--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK  428 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~--~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  428 (642)
                      ...|.++|+..++.....  .  ...+..+.|+|||+.|+..+.       ++.+++|++..        +.     ...
T Consensus       153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~--------~~-----~~~  212 (402)
T 2aq5_A          153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR-------DKRVRVIEPRK--------GT-----VVA  212 (402)
T ss_dssp             TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET-------TSEEEEEETTT--------TE-----EEE
T ss_pred             CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec-------CCcEEEEeCCC--------Cc-----eee
Confidence            357888999888765554  2  566889999999999988874       68899998854        12     334


Q ss_pred             Ec-cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCC
Q 039497          429 IL-TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP  507 (642)
Q Consensus       429 ~l-~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~  507 (642)
                      .+ ..+.......+.|+|||+.|+..........|.+||+.+++.+.....+ .....+..+.|+|||++|++.+.... 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg-  290 (402)
T 2aq5_A          213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDS-  290 (402)
T ss_dssp             EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCS-
T ss_pred             eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCC-
Confidence            44 3333123677899999998877644345669999999876531001112 23445778899999999988775332 


Q ss_pred             CCCCceeEEEEeCCCCc--eEEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497          508 DNVEAFSLYVIKPDGSG--LRRIHVAGPEGSGDVDRERINHVCFSADGEWLL  557 (642)
Q Consensus       508 ~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~  557 (642)
                            .|++|++.+++  ...+.......       .+..+.|+||+..++
T Consensus       291 ------~i~i~d~~~~~~~~~~l~~~~~~~-------~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          291 ------SIRYFEITSEAPFLHYLSMFSSKE-------SQRGMGYMPKRGLEV  329 (402)
T ss_dssp             ------CEEEEEECSSTTCEEEEEEECCSS-------CCSEEEECCGGGSCG
T ss_pred             ------eEEEEEecCCCcceEeecccccCC-------cccceEEecccccce
Confidence                  29999998877  44454333233       578899999998765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.65  E-value=1.1e-13  Score=141.43  Aligned_cols=204  Identities=12%  Similarity=0.064  Sum_probs=115.2

Q ss_pred             ccEEcCCCCEE-EEEec-------CC----CceeEEEEECC-CCCee-EEee-----cCCceeeeeecCCCEEEEEEcCC
Q 039497          334 FPSFSPDGGLI-VFNHD-------FE----LNAGIKIAKSD-GSKRW-TLIK-----DRTAFYNSWSPTEKHVIYTSTGP  394 (642)
Q Consensus       334 ~~~~spdg~~l-~~~~~-------~~----~~~~l~~~d~~-~~~~~-~l~~-----~~~~~~~~~spdg~~l~~~~~~~  394 (642)
                      .+.|+|||++| ++...       ..    ....+.+++++ .++.. .+..     ...+..+.|+|||++|+++..  
T Consensus        87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~--  164 (365)
T 1jof_A           87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL--  164 (365)
T ss_dssp             GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--
T ss_pred             cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC--
Confidence            46789999863 44432       00    23345555554 23332 2221     345778999999999877763  


Q ss_pred             CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc-cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc
Q 039497          395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK-EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN  473 (642)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~  473 (642)
                          ....+.+|+++.  .     +...   ....+.. .......+++|||||++|++....++...+|.++..+|+..
T Consensus       165 ----~~~~v~~~~~~~--~-----g~~~---~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~  230 (365)
T 1jof_A          165 ----TANKLWTHRKLA--S-----GEVE---LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             ----TTTEEEEEEECT--T-----SCEE---EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             ----CCCEEEEEEECC--C-----CCEE---EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence                356788888862  1     1100   1112221 11134677899999999988876555455666666567630


Q ss_pred             c---ceeeCCCC-C--C-------ccccee-EecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEeee--cCCCCC
Q 039497          474 G---DIRQLTDG-P--W-------IDTMPS-WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRIHV--AGPEGS  536 (642)
Q Consensus       474 ~---~~~~l~~~-~--~-------~~~~~~-~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~--~~~~~~  536 (642)
                      .   .+..+... .  .       ....++ |||||++|+........  .....|.+|+++ +++.+.+..  ..... 
T Consensus       231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~--~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-  307 (365)
T 1jof_A          231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF--ELQGYIAGFKLRDCGSIEKQLFLSPTPTS-  307 (365)
T ss_dssp             EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST--TSCCEEEEEEECTTSCEEEEEEEEECSSC-
T ss_pred             EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC--CCCCeEEEEEECCCCCEEEeeeeeecCCC-
Confidence            0   00112211 0  1       245678 99999998766543210  011247778775 566654221  11111 


Q ss_pred             CCcccccccceEEcC---CCCEEEEEEec
Q 039497          537 GDVDRERINHVCFSA---DGEWLLFTANL  562 (642)
Q Consensus       537 ~~~~~~~~~~~~~S~---Dg~~l~~~~~~  562 (642)
                            ....++|||   ||++|++...+
T Consensus       308 ------~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          308 ------GGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             ------CTTCCCEEECTTCTTEEEEECSS
T ss_pred             ------CcccceecCCCcCCCEEEEEEcC
Confidence                  246789999   89998877654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.65  E-value=5.7e-14  Score=141.93  Aligned_cols=281  Identities=8%  Similarity=0.000  Sum_probs=182.4

Q ss_pred             CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCC----ceeEeecCC--CcceEeeCCe-EEEEEec
Q 039497          138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPN----KRVIVCERG--GWPTWSGDST-IYFHRQA  210 (642)
Q Consensus       138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~l~~~~~--~~~~wspdg~-~~~~~~~  210 (642)
                      +.......+|||||++||....+.            .|.+|++.+++    ...+.....  ..++|+|++. ++++. .
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~d~------------~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~   76 (342)
T 1yfq_A           10 PKDYISDIKIIPSKSLLLITSWDG------------SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG-T   76 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTS------------EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE-E
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCC------------eEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEE-c
Confidence            334456689999999999887655            79999999887    444433322  2469999999 88877 4


Q ss_pred             CCCceEEEEEec-CCCcccccCCccceeeCC--CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCC
Q 039497          211 DDGWWSIFRVSF-PENLEFLGFPIAPTRVTP--PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNP  287 (642)
Q Consensus       211 ~~g~~~l~~~~~-~~~~~~~~~~~~~~~l~~--~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  287 (642)
                      .+|  .|..+++ .++        ....+..  +...+..++|+| ++.|+....++     .+.+||+.......    
T Consensus        77 ~dg--~i~~wd~~~~~--------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~-----~i~iwd~~~~~~~~----  136 (342)
T 1yfq_A           77 VQG--EILKVDLIGSP--------SFQALTNNEANLGICRICKYG-DDKLIAASWDG-----LIEVIDPRNYGDGV----  136 (342)
T ss_dssp             TTS--CEEEECSSSSS--------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTS-----EEEEECHHHHTTBC----
T ss_pred             CCC--eEEEEEeccCC--------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCC-----eEEEEccccccccc----
Confidence            567  5666677 666        5566666  766788899999 88888865544     89999884211000    


Q ss_pred             eecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC-CCe
Q 039497          288 FVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG-SKR  366 (642)
Q Consensus       288 ~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~-~~~  366 (642)
                              ...   .+..      .   ..+..        ......+.|+|++  ++....   ...|.++++.. ...
T Consensus       137 --------~~~---~~~~------~---~~~~~--------~~~v~~~~~~~~~--l~~~~~---d~~i~i~d~~~~~~~  183 (342)
T 1yfq_A          137 --------IAV---KNLN------S---NNTKV--------KNKIFTMDTNSSR--LIVGMN---NSQVQWFRLPLCEDD  183 (342)
T ss_dssp             --------EEE---EESC------S---SSSSS--------CCCEEEEEECSSE--EEEEES---TTEEEEEESSCCTTC
T ss_pred             --------ccc---cCCe------e---eEEee--------CCceEEEEecCCc--EEEEeC---CCeEEEEECCccccc
Confidence                    000   0000      0   00000        0111245788877  555433   36788899887 442


Q ss_pred             --eEEee--cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-------
Q 039497          367 --WTLIK--DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-------  434 (642)
Q Consensus       367 --~~l~~--~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------  434 (642)
                        .....  ...+..+.|+| +++.|+..+.       ++.+.+|+++.  .     +..........+..+.       
T Consensus       184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-------dg~i~i~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~  249 (342)
T 1yfq_A          184 NGTIEESGLKYQIRDVALLPKEQEGYACSSI-------DGRVAVEFFDD--Q-----GDDYNSSKRFAFRCHRLNLKDTN  249 (342)
T ss_dssp             CCEEEECSCSSCEEEEEECSGGGCEEEEEET-------TSEEEEEECCT--T-----CCSTTCTTCEEEECCCCCTTCCS
T ss_pred             cceeeecCCCCceeEEEECCCCCCEEEEEec-------CCcEEEEEEcC--C-----Ccccccccceeeecccccccccc
Confidence              22222  55688999999 9999888874       78899999866  1     0000000334443332       


Q ss_pred             -CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCC
Q 039497          435 -TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHN  506 (642)
Q Consensus       435 -~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~  506 (642)
                       ...+..+.|+|||++|+..+.   ...|++||+.+++.   +..+..+ ...+..++  |||++|+..+.++.
T Consensus       250 ~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~---~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          250 LAYPVNSIEFSPRHKFLYTAGS---DGIISCWNLQTRKK---IKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             SCCCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEE---EEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             cceeEEEEEEcCCCCEEEEecC---CceEEEEcCccHhH---hhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence             126778899999999987774   34799999998886   5666665 56666666  99999999887753

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.65  E-value=2.7e-14  Score=143.89  Aligned_cols=233  Identities=10%  Similarity=0.000  Sum_probs=152.8

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cC------CceeeeeecCCCEEEEEEcCC-----CcccCC
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DR------TAFYNSWSPTEKHVIYTSTGP-----IFQSER  400 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~------~~~~~~~spdg~~l~~~~~~~-----~~~~~~  400 (642)
                      ..+.|+|||+++++...  ....|+++|+.+++...... ..      .+..+.|+|||++|+++....     .+...+
T Consensus        37 ~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           37 MVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             cceEEcCCCCEEEEEeC--CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            46789999998877663  34679999998887654333 32      577899999999998885210     000024


Q ss_pred             CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497          401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT  480 (642)
Q Consensus       401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~  480 (642)
                      ..+.+|++..         +.    ....+...  .....+.|+|||++|++.+     ..|+++|+.+++.   ...+.
T Consensus       115 ~~i~v~d~~~---------~~----~~~~~~~~--~~~~~~~~s~dg~~l~~~~-----~~i~~~d~~~~~~---~~~~~  171 (337)
T 1pby_B          115 TRVALYDAET---------LS----RRKAFEAP--RQITMLAWARDGSKLYGLG-----RDLHVMDPEAGTL---VEDKP  171 (337)
T ss_dssp             CEEEEEETTT---------TE----EEEEEECC--SSCCCEEECTTSSCEEEES-----SSEEEEETTTTEE---EEEEC
T ss_pred             ceEEEEECCC---------Cc----EEEEEeCC--CCcceeEECCCCCEEEEeC-----CeEEEEECCCCcE---eeeee
Confidence            5666666532         21    22333332  3566789999999998872     3799999998885   34444


Q ss_pred             CCCCcccceeEecCCCEEEEEecCCCC----------------CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497          481 DGPWIDTMPSWSPKGDLIAFSSNRHNP----------------DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI  544 (642)
Q Consensus       481 ~~~~~~~~~~~spdG~~l~~~~~~~~~----------------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~  544 (642)
                      ... ......|+|||+.|++.......                .......|+++|+.+++...+.......       .+
T Consensus       172 ~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------~~  243 (337)
T 1pby_B          172 IQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV-------FY  243 (337)
T ss_dssp             STT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS-------CE
T ss_pred             ccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC-------ce
Confidence            332 12345899999988766543210                0001126899999988876443322222       34


Q ss_pred             cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497          545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      ..+.|+|||++|++..  +                 .|++|++.+++.......+.....++|+|||++++..
T Consensus       244 ~~~~~s~dg~~l~~~~--~-----------------~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  297 (337)
T 1pby_B          244 FSTAVNPAKTRAFGAY--N-----------------VLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             EEEEECTTSSEEEEEE--S-----------------EEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             eeEEECCCCCEEEEeC--C-----------------eEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE
Confidence            5789999999988772  1                 8999999887754444334456789999999876554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.65  E-value=3e-15  Score=156.21  Aligned_cols=255  Identities=9%  Similarity=-0.045  Sum_probs=162.8

Q ss_pred             CcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEEC
Q 039497          282 FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKS  361 (642)
Q Consensus       282 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~  361 (642)
                      ..+...+|||||+.|+....+...      .    .... ...+..........+|+|||.        .+...++.  .
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV------~----d~~~-~~~l~gh~~~v~~V~FsPdg~--------~~~~~~~~--~   74 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISI------G----QPKY-AKDINCNSKNLFHVKEFPLEF--------ENKLDFEL--A   74 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEE------E----EECC-CSCCSSBGGGTEEEEEECCCC--------CCTTTTSC--C
T ss_pred             ccEEEEEECCCCCEEEEEcCCcee------e----cccc-cceecCCCccEEEEEECCCCC--------cceEEEEe--C
Confidence            345677999999999986443331      0    1000 011100011123568899991        22233321  2


Q ss_pred             CCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC----CC
Q 039497          362 DGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET----GN  437 (642)
Q Consensus       362 ~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~  437 (642)
                      ++.....+.....+..++|||||+.|+.++.       ++.+.+|+...               ....+. +..    ..
T Consensus        75 ~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~-------dg~V~iwd~~~---------------~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           75 QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN-------NGNVSVFKDNK---------------MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             CSSCSSTTSCSCCEEEEEECSSSSCEEEEET-------TSCEEEEETTE---------------EEEECC-CSSCSTTTC
T ss_pred             CCceEeecCCCCcEEEEEECCCCCEEEEEeC-------CCcEEEEeCCc---------------eeeecc-CCCcccccc
Confidence            2222222222567889999999999999885       78899998422               333344 330    24


Q ss_pred             ccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccc----ceeeC----CCCCCcccceeEecCCCEEEEEecCCCCCC
Q 039497          438 NAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNG----DIRQL----TDGPWIDTMPSWSPKGDLIAFSSNRHNPDN  509 (642)
Q Consensus       438 ~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~----~~~~l----~~~~~~~~~~~~spdG~~l~~~~~~~~~~~  509 (642)
                      +..++|||||++|+..+.+   ..|.+|++.++....    .+..+    ..+...+..++|||||  |+..+.++.   
T Consensus       132 v~svafSPDG~~LAsgs~D---GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t---  203 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNED---GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS---  203 (588)
T ss_dssp             EEEEEECSSSSCEEEEETT---SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC---
T ss_pred             EEEEEEcCCCCEEEEEcCC---CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe---
Confidence            6789999999999988743   489999998774100    02444    3334567889999999  555555544   


Q ss_pred             CCceeEEEEeCCCCceE----EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEE
Q 039497          510 VEAFSLYVIKPDGSGLR----RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV  585 (642)
Q Consensus       510 ~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  585 (642)
                           +++|++++++..    .+. ..+..       .+..++|+  |+.|+.++ ++                 .|.+|
T Consensus       204 -----VrlWd~~~~~~~~~~~tL~-~~h~~-------~V~svaFs--g~~LASa~-~~-----------------tIkLW  250 (588)
T 2j04_A          204 -----VFSMTVSASSHQPVSRMIQ-NASRR-------KITDLKIV--DYKVVLTC-PG-----------------YVHKI  250 (588)
T ss_dssp             -----EEEECCCSSSSCCCEEEEE-CCCSS-------CCCCEEEE--TTEEEEEC-SS-----------------EEEEE
T ss_pred             -----EEEEECCCCccccceeeec-ccccC-------cEEEEEEE--CCEEEEEe-CC-----------------eEEEE
Confidence                 999999887742    232 13333       57889999  67787665 22                 79999


Q ss_pred             EcCCCceeecc-CCCCCCCCcEE--ecCCceEEeecCCC
Q 039497          586 KLDGSGLRRLT-WNGYENGTPAW--HPGNQLDLGKLRLE  621 (642)
Q Consensus       586 ~~~~~~~~~lt-~~~~~~~~~~~--s~dg~~~~~~~~~~  621 (642)
                      ++.+++...+. .+...+.+++|  |||++.++.....|
T Consensus       251 d~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG  289 (588)
T 2j04_A          251 DLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS  289 (588)
T ss_dssp             ETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred             ECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence            99998874444 66677788999  99998887766544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.65  E-value=2.1e-14  Score=148.58  Aligned_cols=282  Identities=14%  Similarity=0.027  Sum_probs=182.1

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecC--------------CCCcccCCeecCC----C---C
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLN--------------PNFHHYNPFVSAN----S---E  294 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~~~~~spD----g---~  294 (642)
                      ..+..+...+..++|+|  ++|+....++     .|.+|++...              +...+....|+|+    |   +
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~   82 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDG-----YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC   82 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTS-----EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCC-----EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence            34455666788888988  6777755443     8999998433              3445567789999    8   8


Q ss_pred             EEEEEEeecCCCCCCcccceEeeccCCCce--eEEee--------eCCCccEEc----CCCCE-EEEEecCCCceeEEEE
Q 039497          295 FIGYHRFRGESTEGQSTIPHLEPVASPVKE--LRMLR--------LNGSFPSFS----PDGGL-IVFNHDFELNAGIKIA  359 (642)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~~~~~s----pdg~~-l~~~~~~~~~~~l~~~  359 (642)
                      .|+....++.      ..+|-.........  +....        .....+.|+    |+++. |+.... +  ..|.++
T Consensus        83 ~l~s~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-d--g~i~iw  153 (397)
T 1sq9_A           83 LVATTSFSGD------LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV-K--GTTYIW  153 (397)
T ss_dssp             EEEEEETTSC------EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET-T--SCEEEE
T ss_pred             EEEEEcCCCC------EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC-C--CcEEEE
Confidence            8877755443      33343322221000  11111        112456899    99998 766554 2  556666


Q ss_pred             ECCC------CCe-e-----EEe--------ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497          360 KSDG------SKR-W-----TLI--------KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN  419 (642)
Q Consensus       360 d~~~------~~~-~-----~l~--------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  419 (642)
                      ++..      ++. .     .+.        ....+..+.|+|++ .|+...       .++.+.+|++..        +
T Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-------~dg~i~i~d~~~--------~  217 (397)
T 1sq9_A          154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF-------NNGTVQISELST--------L  217 (397)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC-------TTSEEEEEETTT--------T
T ss_pred             eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe-------CCCcEEEEECCC--------C
Confidence            6665      322 2     332        15568899999999 666654       378899998854        1


Q ss_pred             CCccccceEEccc---c---CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC------------
Q 039497          420 REEIPCDVKILTK---E---ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD------------  481 (642)
Q Consensus       420 ~~~~~~~~~~l~~---~---~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~------------  481 (642)
                      .     ....+..   +   . ..+..+.|+||+++|+..+...+...|.+||+.+++.   +..+..            
T Consensus       218 ~-----~~~~~~~~~~h~~~~-~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~  288 (397)
T 1sq9_A          218 R-----PLYNFESQHSMINNS-NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER---IGSLSVPTHSSQASLGEF  288 (397)
T ss_dssp             E-----EEEEEECCC---CCC-CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE---EEEECBC--------CCB
T ss_pred             c-----eeEEEeccccccccC-CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc---cceeccCccccccccccc
Confidence            1     3444444   3   4 6778899999999998877432226899999998876   555655            


Q ss_pred             -CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-----CC---------------CCCCCcc
Q 039497          482 -GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-----GP---------------EGSGDVD  540 (642)
Q Consensus       482 -~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-----~~---------------~~~~~~~  540 (642)
                       +...+..+.|+|+|++|+..+.++.        |++||+.+++.......     .+               ..     
T Consensus       289 ~~~~~v~~~~~~~~~~~l~~~~~dg~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----  355 (397)
T 1sq9_A          289 AHSSWVMSLSFNDSGETLCSAGWDGK--------LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP-----  355 (397)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEETTSE--------EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC-----
T ss_pred             ccCCcEEEEEECCCCCEEEEEeCCCe--------EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCC-----
Confidence             5567788999999999988886654        99999988765544331     11               22     


Q ss_pred             cccccceEEcCCC----------CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          541 RERINHVCFSADG----------EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       541 ~~~~~~~~~S~Dg----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                        .+..+.|+|||          +.|+..+.++                 .|.+|+++++
T Consensus       356 --~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg-----------------~i~iw~~~~g  396 (397)
T 1sq9_A          356 --GVFDVKFLKKGWRSGMGADLNESLCCVCLDR-----------------SIRWFREAGG  396 (397)
T ss_dssp             --CEEEEEEECTTTSBSTTCTTSCEEEEEETTT-----------------EEEEEEEEC-
T ss_pred             --ceeEEEeccccccccccccccceEEEecCCC-----------------cEEEEEcCCC
Confidence              67889999999          5676666554                 6777777654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.64  E-value=2.1e-13  Score=142.41  Aligned_cols=270  Identities=14%  Similarity=0.146  Sum_probs=177.6

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCcccee-e--CCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTR-V--TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE  272 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~-l--~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~  272 (642)
                      +.||+++ +++++.  ++  .|+.|+..++        +... +  ..+...+..++|+|||++|+....++     .+.
T Consensus       111 l~wS~~n-~lAvgl--d~--tV~lWd~~tg--------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg-----~v~  172 (420)
T 4gga_A          111 VDWSSGN-VLAVAL--DN--SVYLWSASSG--------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-----EVQ  172 (420)
T ss_dssp             EEECTTS-EEEEEE--TT--EEEEEETTTC--------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS-----CEE
T ss_pred             EEECCCC-EEEEEe--CC--EEEEEECCCC--------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC-----eEE
Confidence            5999876 555552  55  6778888887        3333 2  23445688899999999999865544     789


Q ss_pred             EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497          273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL  352 (642)
Q Consensus       273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  352 (642)
                      +||+...              +.+...                   .+         .......++.+++.|+....   
T Consensus       173 iWd~~~~--------------~~~~~~-------------------~~---------h~~~v~~~s~~~~~l~sgs~---  207 (420)
T 4gga_A          173 LWDVQQQ--------------KRLRNM-------------------TS---------HSARVGSLSWNSYILSSGSR---  207 (420)
T ss_dssp             EEETTTT--------------EEEEEE-------------------CC---------CSSCEEEEEEETTEEEEEET---
T ss_pred             EEEcCCC--------------cEEEEE-------------------eC---------CCCceEEEeeCCCEEEEEeC---
Confidence            9987321              111110                   00         01112245566776666543   


Q ss_pred             ceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497          353 NAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI  429 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  429 (642)
                      ...+++++...........   ...+....|+|+|+.++....       ++.+.+|++..        +. ........
T Consensus       208 d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~-------D~~v~i~~~~~--------~~-~~~~~~~~  271 (420)
T 4gga_A          208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-------DNLVNVWPSAP--------GE-GGWVPLQT  271 (420)
T ss_dssp             TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-------TSCEEEEESSC--------CS-SCSCCSEE
T ss_pred             CCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec-------cccceEEeecc--------cc-ccceeeee
Confidence            3567777876654332222   556778899999999988774       68889998755        11 10002233


Q ss_pred             ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCC
Q 039497          430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDN  509 (642)
Q Consensus       430 l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~  509 (642)
                      ..... ..+..+.|+|++..++.......+..|.+||+.+|+.   ...+..+ ..+....|+|+++.|+..+...    
T Consensus       272 ~~~~~-~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~---~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~----  342 (420)
T 4gga_A          272 FTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAH-SQVCSILWSPHYKELISGHGFA----  342 (420)
T ss_dssp             ECCCS-SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE---EEEEECS-SCEEEEEEETTTTEEEEEECTT----
T ss_pred             ecccC-CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc---ceeeccc-cceeeeeecCCCCeEEEEEecC----
Confidence            34444 5677889999988877665433455899999999886   4444433 4567789999999998887432    


Q ss_pred             CCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          510 VEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       510 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                        ...|++||+.+++..... .++.+       .+..++|||||++|+..+.++
T Consensus       343 --d~~I~iwd~~~~~~v~~l-~gH~~-------~V~~l~~spdg~~l~S~s~D~  386 (420)
T 4gga_A          343 --QNQLVIWKYPTMAKVAEL-KGHTS-------RVLSLTMSPDGATVASAAADE  386 (420)
T ss_dssp             --TCCEEEEETTTCCEEEEE-CCCSS-------CEEEEEECTTSSCEEEEETTT
T ss_pred             --CCEEEEEECCCCcEEEEE-cCCCC-------CEEEEEEcCCCCEEEEEecCC
Confidence              123999999887654433 25555       688999999999998877665

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.64  E-value=2.9e-14  Score=159.08  Aligned_cols=274  Identities=17%  Similarity=0.153  Sum_probs=177.4

Q ss_pred             eeCCCCCccccceeecCC-cEEEEEEeccCCceeeEEEEEee-------------cCCCCcccCCeecCCCCEEEEEEee
Q 039497          237 RVTPPGVHCFTPAAFHDG-KRLAVATRRKNRNFRHIEIYDLT-------------LNPNFHHYNPFVSANSEFIGYHRFR  302 (642)
Q Consensus       237 ~l~~~~~~~~~~~~SpdG-~~l~~~~~~~~~~~~~i~~~d~~-------------~~~~~~~~~~~~spDg~~l~~~~~~  302 (642)
                      .+..|...+..++++|++ +.|+....++     .|++|++.             ..+...+....|+|||+.|+....+
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~-----~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDK-----SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTS-----EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCC-----cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            355666677888899876 5566644443     89999873             2345556678899999999887655


Q ss_pred             cCCCCCCcccceEeeccCCCceeEEeee--CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-----cCCc
Q 039497          303 GESTEGQSTIPHLEPVASPVKELRMLRL--NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-----DRTA  375 (642)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-----~~~~  375 (642)
                      +.      ..+|  .+........+...  ......|+|+|++|+..+.   ...|.++|..+.....+..     ...+
T Consensus       452 g~------v~vw--d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~h~~~v  520 (694)
T 3dm0_A          452 GE------LRLW--DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR---DRTIKLWNTLGECKYTISEGGEGHRDWV  520 (694)
T ss_dssp             SE------EEEE--ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET---TSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred             Cc------EEEE--ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC---CCEEEEEECCCCcceeeccCCCCCCCcE
Confidence            44      3333  22222111111111  1245689999998887664   3567777876654444432     2347


Q ss_pred             eeeeeecCCC--EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497          376 FYNSWSPTEK--HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR  453 (642)
Q Consensus       376 ~~~~~spdg~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~  453 (642)
                      ..+.|+|++.  .|+..+       .++.+++|++..        ..     ....+..+. ..+..+.|||||++|+..
T Consensus       521 ~~~~~~~~~~~~~l~s~s-------~d~~v~vwd~~~--------~~-----~~~~~~~h~-~~v~~v~~spdg~~l~sg  579 (694)
T 3dm0_A          521 SCVRFSPNTLQPTIVSAS-------WDKTVKVWNLSN--------CK-----LRSTLAGHT-GYVSTVAVSPDGSLCASG  579 (694)
T ss_dssp             EEEEECSCSSSCEEEEEE-------TTSCEEEEETTT--------CC-----EEEEECCCS-SCEEEEEECTTSSEEEEE
T ss_pred             EEEEEeCCCCcceEEEEe-------CCCeEEEEECCC--------Cc-----EEEEEcCCC-CCEEEEEEeCCCCEEEEE
Confidence            7899999973  455554       378999999854        22     445555555 778889999999998877


Q ss_pred             eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497          454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP  533 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  533 (642)
                      +.+   ..|.+||+.+++.   +..+.. ...+..+.|+|++.+|+......         |.+||+.++..........
T Consensus       580 ~~D---g~i~iwd~~~~~~---~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~---------i~iwd~~~~~~~~~~~~~~  643 (694)
T 3dm0_A          580 GKD---GVVLLWDLAEGKK---LYSLEA-NSVIHALCFSPNRYWLCAATEHG---------IKIWDLESKSIVEDLKVDL  643 (694)
T ss_dssp             ETT---SBCEEEETTTTEE---EECCBC-SSCEEEEEECSSSSEEEEEETTE---------EEEEETTTTEEEEEECCCC
T ss_pred             eCC---CeEEEEECCCCce---EEEecC-CCcEEEEEEcCCCcEEEEEcCCC---------EEEEECCCCCChhhhcccc
Confidence            743   4799999998875   444443 34567889999999877665432         9999998876543222110


Q ss_pred             CC---------CCCcc--cccccceEEcCCCCEEEEEEecC
Q 039497          534 EG---------SGDVD--RERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       534 ~~---------~~~~~--~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      ..         .....  ...+..+.|||||++|+..+.++
T Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg  684 (694)
T 3dm0_A          644 KAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG  684 (694)
T ss_dssp             C----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence            00         00000  01245789999999998887765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.63  E-value=3.6e-14  Score=147.22  Aligned_cols=226  Identities=11%  Similarity=0.134  Sum_probs=156.4

Q ss_pred             ccEEcC-CCCEEEEEecCCCceeEEEEECCCCC-------e-eEEee-cCCceeeeeecCCC-EEEEEEcCCCcccCCCe
Q 039497          334 FPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSK-------R-WTLIK-DRTAFYNSWSPTEK-HVIYTSTGPIFQSERAT  402 (642)
Q Consensus       334 ~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~-------~-~~l~~-~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~  402 (642)
                      .+.|+| +++.|+..+.   ...|.++++..+.       . ..+.. ...+..+.|+|+++ .|+..+       .++.
T Consensus        86 ~~~~~p~~~~~l~s~s~---dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~-------~dg~  155 (402)
T 2aq5_A           86 DIAWCPHNDNVIASGSE---DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG-------CDNV  155 (402)
T ss_dssp             EEEECTTCTTEEEEEET---TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE-------TTSC
T ss_pred             EEEeCCCCCCEEEEEeC---CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc-------CCCE
Confidence            568999 8888877654   3567888887752       2 23322 56788999999985 555555       3788


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEc--cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC-
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKIL--TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL-  479 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l-  479 (642)
                      +.+|++..        +.     ....+  ..+. ..+..+.|+|||+.|+..+.   +..|.+||+.+++.   +..+ 
T Consensus       156 i~iwd~~~--------~~-----~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~---~~~~~  215 (402)
T 2aq5_A          156 ILVWDVGT--------GA-----AVLTLGPDVHP-DTIYSVDWSRDGALICTSCR---DKRVRVIEPRKGTV---VAEKD  215 (402)
T ss_dssp             EEEEETTT--------TE-----EEEEECTTTCC-SCEEEEEECTTSSCEEEEET---TSEEEEEETTTTEE---EEEEE
T ss_pred             EEEEECCC--------CC-----ccEEEecCCCC-CceEEEEECCCCCEEEEEec---CCcEEEEeCCCCce---eeeec
Confidence            99999855        22     44455  3344 67888999999999988874   34899999998875   4555 


Q ss_pred             CCCCCc-ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497          480 TDGPWI-DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCFSADGEWLL  557 (642)
Q Consensus       480 ~~~~~~-~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~  557 (642)
                      ..+... +..+.|+|||++|+......     ....|.+||+.+.+. ..+.......       .+..+.|+|||+.|+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~l~~g~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~  283 (402)
T 2aq5_A          216 RPHEGTRPVHAVFVSEGKILTTGFSRM-----SERQVALWDTKHLEEPLSLQELDTSS-------GVLLPFFDPDTNIVY  283 (402)
T ss_dssp             CSSCSSSCCEEEECSTTEEEEEEECTT-----CCEEEEEEETTBCSSCSEEEECCCCS-------SCEEEEEETTTTEEE
T ss_pred             cCCCCCcceEEEEcCCCcEEEEeccCC-----CCceEEEEcCccccCCceEEeccCCC-------ceeEEEEcCCCCEEE
Confidence            334333 57789999998777763221     234599999987653 2222222233       467899999999998


Q ss_pred             EEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc--eeeccCC--CCCCCCcEEecCCceEEee
Q 039497          558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG--LRRLTWN--GYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~lt~~--~~~~~~~~~s~dg~~~~~~  617 (642)
                      ++....+                .|.+|++..++  +..+...  ...+..++|+|+++++++.
T Consensus       284 ~~g~~dg----------------~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~  331 (402)
T 2aq5_A          284 LCGKGDS----------------SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK  331 (402)
T ss_dssp             EEETTCS----------------CEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred             EEEcCCC----------------eEEEEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence            7764332                68888888766  4455443  3667899999999887753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.63  E-value=5e-14  Score=147.87  Aligned_cols=285  Identities=12%  Similarity=0.105  Sum_probs=174.4

Q ss_pred             CCccCCceeCC-CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec--CC---CcceEee-CCeEEEEEecC
Q 039497          139 GVVDYSPSVSY-SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE--RG---GWPTWSG-DSTIYFHRQAD  211 (642)
Q Consensus       139 ~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~---~~~~wsp-dg~~~~~~~~~  211 (642)
                      .....+.+|+| +++.||....++            .|.+|++.+++...+...  +.   ..++|+| |+.++++. ..
T Consensus       119 ~~~V~~l~~~P~~~~~lasGs~dg------------~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~-s~  185 (435)
T 4e54_B          119 DRRATSLAWHPTHPSTVAVGSKGG------------DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS-SM  185 (435)
T ss_dssp             SSCEEEEEECSSCTTCEEEEETTS------------CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE-CS
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCC------------EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE-eC
Confidence            33456789999 567888887665            799999988876555432  22   2459998 56788877 56


Q ss_pred             CCceEEEEEecCCCcccccCCccceeeCCC---CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCe
Q 039497          212 DGWWSIFRVSFPENLEFLGFPIAPTRVTPP---GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPF  288 (642)
Q Consensus       212 ~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  288 (642)
                      +|...||  |+.++        ....+...   ...+..++|+|||++|+.....     ..|.+||+....        
T Consensus       186 D~~v~iw--d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~--------  242 (435)
T 4e54_B          186 EGTTRLQ--DFKGN--------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKE--------  242 (435)
T ss_dssp             SSCEEEE--ETTSC--------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCB--------
T ss_pred             CCEEEEe--eccCC--------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcce--------
Confidence            7866665  55554        33333222   2345677899999988885433     378888862110        


Q ss_pred             ecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE
Q 039497          289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT  368 (642)
Q Consensus       289 ~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~  368 (642)
                                             .   ..+......       ...+.|+|+++.++.....+  ..|.++|+...+...
T Consensus       243 -----------------------~---~~~~~h~~~-------v~~v~~~p~~~~~~~s~s~d--~~v~iwd~~~~~~~~  287 (435)
T 4e54_B          243 -----------------------L---WNLRMHKKK-------VTHVALNPCCDWFLATASVD--QTVKIWDLRQVRGKA  287 (435)
T ss_dssp             -----------------------C---CCSBCCSSC-------EEEEEECTTCSSEEEEEETT--SBCCEEETTTCCSSS
T ss_pred             -----------------------e---EEEecccce-------EEeeeecCCCceEEEEecCc--ceeeEEecccccccc
Confidence                                   0   000000011       12458899988665544323  456667776544321


Q ss_pred             -Ee----ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC-----CCc
Q 039497          369 -LI----KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET-----GNN  438 (642)
Q Consensus       369 -l~----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~  438 (642)
                       +.    ....+..+.|+|||++|+..+.       ++.++||++..        +.     ....+..+..     ...
T Consensus       288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~-------D~~i~iwd~~~--------~~-----~~~~~~~~~~~~~~~~~~  347 (435)
T 4e54_B          288 SFLYSLPHRHPVNAACFSPDGARLLTTDQ-------KSEIRVYSASQ--------WD-----CPLGLIPHPHRHFQHLTP  347 (435)
T ss_dssp             CCSBCCBCSSCEEECCBCTTSSEEEEEES-------SSCEEEEESSS--------SS-----SEEEECCCCCCCCSSSCC
T ss_pred             eEEEeeeccccccceeECCCCCeeEEEcC-------CCEEEEEECCC--------Cc-----cceEEeccccccccccee
Confidence             11    1456788999999999988774       78899999865        22     2233222110     122


Q ss_pred             cCcEECCCCCeEEEEeCCCC---------ceeEEEEECCCCccccceeeCCC-CCCcccce-eEecCCCEEEEEecCCCC
Q 039497          439 AFPSCSPDGKFLVFRSGRSG---------HKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMP-SWSPKGDLIAFSSNRHNP  507 (642)
Q Consensus       439 ~~~~~SpDg~~l~~~~~~~g---------~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~-~~spdG~~l~~~~~~~~~  507 (642)
                      ....|+|++..++.....++         ...|.+||..+|+.   +..+.. +...+..+ +|||||++|+..+ ++  
T Consensus       348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~---~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~--  421 (435)
T 4e54_B          348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM---MCQLYDPESSGISSLNEFNPMGDTLASAM-GY--  421 (435)
T ss_dssp             CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE---EEEECCSSCCCCCCEEEECTTSSCEEEEC-SS--
T ss_pred             EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE---EEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC--
Confidence            34578888888877654322         23688999999886   555543 33344554 7999999887654 32  


Q ss_pred             CCCCceeEEEEeCCCCceE
Q 039497          508 DNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       508 ~~~~~~~l~~~d~~~~~~~  526 (642)
                            .|++|++..++.+
T Consensus       422 ------~i~iW~~~~gk~r  434 (435)
T 4e54_B          422 ------HILIWSQQEARTR  434 (435)
T ss_dssp             ------EEEECCCC-----
T ss_pred             ------cEEEEECCcCeee
Confidence                  3999999887654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.63  E-value=2.2e-13  Score=142.28  Aligned_cols=267  Identities=12%  Similarity=0.080  Sum_probs=179.0

Q ss_pred             ceEEEEccCCceEeccc---CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-Ccc
Q 039497          121 ALYSTDLKASKFTRLTP---YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-GWP  196 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~  196 (642)
                      .|++.+..+|+..++..   +.......+|||||++||....+.            .|.+|++.+++..+....+. ...
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg------------~v~iWd~~~~~~~~~~~~h~~~v~  193 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------------EVQLWDVQQQKRLRNMTSHSARVG  193 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------------CEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC------------eEEEEEcCCCcEEEEEeCCCCceE
Confidence            57777999998766543   333457789999999999988766            79999999887655544333 334


Q ss_pred             eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497          197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL  276 (642)
Q Consensus       197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~  276 (642)
                      .++.++.++++. ..++  .++.++......      ....+..+...+....++|+|++++....++     .+.+|+.
T Consensus       194 ~~s~~~~~l~sg-s~d~--~i~~~d~~~~~~------~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~-----~v~i~~~  259 (420)
T 4gga_A          194 SLSWNSYILSSG-SRSG--HIHHHDVRVAEH------HVATLSGHSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPS  259 (420)
T ss_dssp             EEEEETTEEEEE-ETTS--EEEEEETTSSSC------EEEEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEES
T ss_pred             EEeeCCCEEEEE-eCCC--ceeEeeecccce------eeEEecccccceeeeeecCCCCeeeeeeccc-----cceEEee
Confidence            677788888777 4566  445555444321      3445556655677788999999988865544     6778876


Q ss_pred             ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeE
Q 039497          277 TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGI  356 (642)
Q Consensus       277 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l  356 (642)
                      ........                           .  +.......       .......|+|++..++..........|
T Consensus       260 ~~~~~~~~---------------------------~--~~~~~~~~-------~~V~~~~~~p~~~~~la~~~gs~D~~I  303 (420)
T 4gga_A          260 APGEGGWV---------------------------P--LQTFTQHQ-------GAVKAVAWCPWQSNVLATGGGTSDRHI  303 (420)
T ss_dssp             SCCSSCSC---------------------------C--SEEECCCS-------SCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred             ccccccce---------------------------e--eeeecccC-------CceeeeeeCCCcccEEEEEeecCCCEE
Confidence            32210000                           0  00000000       011245789987766665433445789


Q ss_pred             EEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC
Q 039497          357 KIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET  435 (642)
Q Consensus       357 ~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  435 (642)
                      .++|+.++....... ...+....|+|+++.++.+..     ..++.++||++..        +.     ....+..+. 
T Consensus       304 ~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg-----~~d~~I~iwd~~~--------~~-----~v~~l~gH~-  364 (420)
T 4gga_A          304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG-----FAQNQLVIWKYPT--------MA-----KVAELKGHT-  364 (420)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEEC-----TTTCCEEEEETTT--------CC-----EEEEECCCS-
T ss_pred             EEEeCCccccceeeccccceeeeeecCCCCeEEEEEe-----cCCCEEEEEECCC--------Cc-----EEEEEcCCC-
Confidence            999998887655444 666788999999999988763     2367899998854        22     566677666 


Q ss_pred             CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE  471 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~  471 (642)
                      ..+..++|||||++|+..+.+   ..|.+|++....
T Consensus       365 ~~V~~l~~spdg~~l~S~s~D---~tvriWdv~~~~  397 (420)
T 4gga_A          365 SRVLSLTMSPDGATVASAAAD---ETLRLWRCFELD  397 (420)
T ss_dssp             SCEEEEEECTTSSCEEEEETT---TEEEEECCSCSS
T ss_pred             CCEEEEEEcCCCCEEEEEecC---CeEEEEECCCCC
Confidence            788899999999999877743   378889887544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.63  E-value=9.9e-14  Score=138.11  Aligned_cols=279  Identities=13%  Similarity=0.129  Sum_probs=180.6

Q ss_pred             ceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecCCC
Q 039497          235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGEST  306 (642)
Q Consensus       235 ~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~~~  306 (642)
                      ...+..+...+..++| |+|++|+....++     .+.+||+..        .+...+....|+|+++.|+....++.  
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--   82 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDG-----TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM--   82 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTS-----EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC--
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCC-----cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe--
Confidence            3455666667888888 9999988865544     899999832        34556677899999999988765544  


Q ss_pred             CCCcccceEeeccCCCcee-EEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeec-C
Q 039497          307 EGQSTIPHLEPVASPVKEL-RMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSP-T  383 (642)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~sp-d  383 (642)
                          ...|..........+ ...........++.+++.++....   ...|.+++ .......+.. ...+..+.|+| +
T Consensus        83 ----i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~---d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~  154 (313)
T 3odt_A           83 ----INGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSW---DKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFS  154 (313)
T ss_dssp             ----EEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEET---TSEEEEEE-TTEEEEEEECCSSCEEEEEEEETT
T ss_pred             ----EEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeC---CCCEEEEc-CCcEEEecccCCCceeEEEEccCC
Confidence                222211111111111 111111111233336777776654   35677777 2222222222 56677888888 8


Q ss_pred             CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEE
Q 039497          384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLF  463 (642)
Q Consensus       384 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~  463 (642)
                      ++.|+..+.       ++.+.+|+...               ....+.......+..+.|+|+++ ++..+.   ...|.
T Consensus       155 ~~~l~~~~~-------d~~i~i~d~~~---------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---dg~i~  208 (313)
T 3odt_A          155 ENKFLTASA-------DKTIKLWQNDK---------------VIKTFSGIHNDVVRHLAVVDDGH-FISCSN---DGLIK  208 (313)
T ss_dssp             TTEEEEEET-------TSCEEEEETTE---------------EEEEECSSCSSCEEEEEEEETTE-EEEEET---TSEEE
T ss_pred             CCEEEEEEC-------CCCEEEEecCc---------------eEEEEeccCcccEEEEEEcCCCe-EEEccC---CCeEE
Confidence            888887764       67899998322               44455442226778899999998 655553   34899


Q ss_pred             EEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccc
Q 039497          464 VLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRER  543 (642)
Q Consensus       464 ~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~  543 (642)
                      +||+.+++.   +..+..+...+..+.|+|+|+ |+..+.++.        |++||+..++...... ....       .
T Consensus       209 i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~--------v~iwd~~~~~~~~~~~-~~~~-------~  268 (313)
T 3odt_A          209 LVDMHTGDV---LRTYEGHESFVYCIKLLPNGD-IVSCGEDRT--------VRIWSKENGSLKQVIT-LPAI-------S  268 (313)
T ss_dssp             EEETTTCCE---EEEEECCSSCEEEEEECTTSC-EEEEETTSE--------EEEECTTTCCEEEEEE-CSSS-------C
T ss_pred             EEECCchhh---hhhhhcCCceEEEEEEecCCC-EEEEecCCE--------EEEEECCCCceeEEEe-ccCc-------e
Confidence            999998886   666766667788899999995 666665543        9999998887655544 2233       5


Q ss_pred             ccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497          544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR  593 (642)
Q Consensus       544 ~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  593 (642)
                      +..+.|+|||+ ++..+.++                 .|.+|++..++..
T Consensus       269 i~~~~~~~~~~-~~~~~~dg-----------------~i~iw~~~~~~~~  300 (313)
T 3odt_A          269 IWSVDCMSNGD-IIVGSSDN-----------------LVRIFSQEKSRWA  300 (313)
T ss_dssp             EEEEEECTTSC-EEEEETTS-----------------CEEEEESCGGGCC
T ss_pred             EEEEEEccCCC-EEEEeCCC-----------------cEEEEeCCCCcee
Confidence            78899999998 44444433                 7888998876543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.5e-13  Score=144.89  Aligned_cols=235  Identities=9%  Similarity=0.041  Sum_probs=151.9

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECC--CCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSD--GSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~--~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      ..++|+|||++|++....+  ..|.++++.  +++......    ...+..+.|+|||+.|+....       ++.+.+|
T Consensus       106 ~~~~~s~d~~~l~~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------~g~v~~~  176 (450)
T 2vdu_B          106 RNLRLTSDESRLIACADSD--KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-------FGDVYSI  176 (450)
T ss_dssp             EEEEECTTSSEEEEEEGGG--TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-------TSEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCC--CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-------CCcEEEE
Confidence            4568999999976655333  456666666  555444432    466889999999999988873       5667777


Q ss_pred             EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC---CCeEEEEeCCCCceeEEEEECCCCccccceee-CCCC
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD---GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDG  482 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD---g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~~  482 (642)
                      ++..        +. ........+..+. ..+..+.|+||   +++|+..+.+   ..|++||+.+++.   +.. +..+
T Consensus       177 ~~~~--------~~-~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d---~~i~vwd~~~~~~---~~~~~~~h  240 (450)
T 2vdu_B          177 DINS--------IP-EEKFTQEPILGHV-SMLTDVHLIKDSDGHQFIITSDRD---EHIKISHYPQCFI---VDKWLFGH  240 (450)
T ss_dssp             ETTS--------CC-CSSCCCCCSEECS-SCEEEEEEEECTTSCEEEEEEETT---SCEEEEEESCTTC---EEEECCCC
T ss_pred             ecCC--------cc-cccccceeeeccc-CceEEEEEcCCCCCCcEEEEEcCC---CcEEEEECCCCce---eeeeecCC
Confidence            6643        11 0000111333344 56788999999   8888777643   4799999988875   444 5456


Q ss_pred             CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC--C---------------CCCCccccccc
Q 039497          483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP--E---------------GSGDVDRERIN  545 (642)
Q Consensus       483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~---------------~~~~~~~~~~~  545 (642)
                      ...+..++|+ ||++|+..+.++.        |++||+.+++.........  .               .........+.
T Consensus       241 ~~~v~~~~~s-d~~~l~s~~~d~~--------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          241 KHFVSSICCG-KDYLLLSAGGDDK--------IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             SSCEEEEEEC-STTEEEEEESSSE--------EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             CCceEEEEEC-CCCEEEEEeCCCe--------EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence            6778889999 9999998886654        9999998887544332100  0               00000011456


Q ss_pred             ceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc--CCC---c-eeeccCCCCCCCCcEEecCCceEEeecC
Q 039497          546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL--DGS---G-LRRLTWNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       546 ~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~---~-~~~lt~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      .+.|+|||++|++.+...+                .|.+|++  ..+   . +..+..+ ..+..++|+|++ ++++..+
T Consensus       312 ~i~~~~~~~~l~~~~~~d~----------------~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~  373 (450)
T 2vdu_B          312 KIIKSKNLPFVAFFVEATK----------------CIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDN  373 (450)
T ss_dssp             EEEECSSSSEEEEEETTCS----------------EEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECC
T ss_pred             EEEEeCCCCEEEEEECCCC----------------eEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEec
Confidence            7899999999988873322                6777777  333   2 3334444 567889999965 4544433

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.63  E-value=1.7e-13  Score=152.87  Aligned_cols=284  Identities=14%  Similarity=0.100  Sum_probs=184.8

Q ss_pred             ecccCCCccCCceeCCCC-cEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCc------eeEeecCC--CcceEeeCCeE
Q 039497          134 RLTPYGVVDYSPSVSYSG-KFIAVASYESRPWPGEFHELNTDIVVFQESDPNK------RVIVCERG--GWPTWSGDSTI  204 (642)
Q Consensus       134 ~lt~~~~~~~~~~~SPDG-~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------~~l~~~~~--~~~~wspdg~~  204 (642)
                      .|..|.......+|+|++ +.|+..+.+.            .|.+|++.....      +.+..+..  ..++|+|||++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~------------~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~  444 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDK------------SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF  444 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTS------------EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCC------------cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE
Confidence            355566666778899976 6777777666            788999876432      12222222  24599999998


Q ss_pred             EEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcc
Q 039497          205 YFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHH  284 (642)
Q Consensus       205 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~  284 (642)
                      +++. ..+|  .|..+++.++.       ....+..+...+..++|+|||++|+....++     .|.+||+..      
T Consensus       445 l~sg-s~Dg--~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~-----~i~iwd~~~------  503 (694)
T 3dm0_A          445 ALSG-SWDG--ELRLWDLAAGV-------STRRFVGHTKDVLSVAFSLDNRQIVSASRDR-----TIKLWNTLG------  503 (694)
T ss_dssp             EEEE-ETTS--EEEEEETTTTE-------EEEEEECCSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTS------
T ss_pred             EEEE-eCCC--cEEEEECCCCc-------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC-----EEEEEECCC------
Confidence            8887 5677  45555666663       4456667766788899999999998866554     788888521      


Q ss_pred             cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCC--CEEEEEecCCCceeEEEEECC
Q 039497          285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDG--GLIVFNHDFELNAGIKIAKSD  362 (642)
Q Consensus       285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~l~~~d~~  362 (642)
                               ........ ..              ......       .....|+|++  ..|+..+.   ...|.++|+.
T Consensus       504 ---------~~~~~~~~-~~--------------~~h~~~-------v~~~~~~~~~~~~~l~s~s~---d~~v~vwd~~  549 (694)
T 3dm0_A          504 ---------ECKYTISE-GG--------------EGHRDW-------VSCVRFSPNTLQPTIVSASW---DKTVKVWNLS  549 (694)
T ss_dssp             ---------CEEEEECS-ST--------------TSCSSC-------EEEEEECSCSSSCEEEEEET---TSCEEEEETT
T ss_pred             ---------Ccceeecc-CC--------------CCCCCc-------EEEEEEeCCCCcceEEEEeC---CCeEEEEECC
Confidence                     00000000 00              000000       1245789987  34554433   3578888998


Q ss_pred             CCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccC
Q 039497          363 GSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF  440 (642)
Q Consensus       363 ~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  440 (642)
                      .++......  ...+..+.|+|||+.|+..+.       ++.+++|++..        +.     ....+.. . ..+..
T Consensus       550 ~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~-------Dg~i~iwd~~~--------~~-----~~~~~~~-~-~~v~~  607 (694)
T 3dm0_A          550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK-------DGVVLLWDLAE--------GK-----KLYSLEA-N-SVIHA  607 (694)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSBCEEEETTT--------TE-----EEECCBC-S-SCEEE
T ss_pred             CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC-------CCeEEEEECCC--------Cc-----eEEEecC-C-CcEEE
Confidence            877554443  556889999999999988774       78899999854        11     2233322 2 45777


Q ss_pred             cEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-------------------CcccceeEecCCCEEEEE
Q 039497          441 PSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-------------------WIDTMPSWSPKGDLIAFS  501 (642)
Q Consensus       441 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-------------------~~~~~~~~spdG~~l~~~  501 (642)
                      +.||||+..|+....    ..|.+||+.+++.   +..+....                   ..+..+.|||||++|+..
T Consensus       608 ~~~sp~~~~l~~~~~----~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg  680 (694)
T 3dm0_A          608 LCFSPNRYWLCAATE----HGIKIWDLESKSI---VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG  680 (694)
T ss_dssp             EEECSSSSEEEEEET----TEEEEEETTTTEE---EEEECCCCC----------------CCCCEEEEEECTTSSEEEEE
T ss_pred             EEEcCCCcEEEEEcC----CCEEEEECCCCCC---hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE
Confidence            899999988876653    2599999998875   33332110                   123567999999999988


Q ss_pred             ecCCCCCCCCceeEEEEeCC
Q 039497          502 SNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       502 ~~~~~~~~~~~~~l~~~d~~  521 (642)
                      +.++.        |.+|++.
T Consensus       681 s~Dg~--------i~iW~i~  692 (694)
T 3dm0_A          681 YTDGV--------IRVWGIG  692 (694)
T ss_dssp             ETTSE--------EEEEEC-
T ss_pred             cCCCe--------EEEEecc
Confidence            87764        8888874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.62  E-value=1.5e-14  Score=147.07  Aligned_cols=280  Identities=11%  Similarity=0.049  Sum_probs=174.1

Q ss_pred             CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec---------CCCCcccCCeecCC---CCEEEEEEeecCCCC
Q 039497          240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL---------NPNFHHYNPFVSAN---SEFIGYHRFRGESTE  307 (642)
Q Consensus       240 ~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~~spD---g~~l~~~~~~~~~~~  307 (642)
                      .+...+..++|+|+|+.++++.... .....+.+||+..         .+...+....|+|+   |+.|+....++.   
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~---   91 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN---   91 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC---
T ss_pred             CCCCceEEEEEcCCCceEEEecCcc-CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe---
Confidence            3555788899999998887755320 1144899999832         23445667889999   677777654443   


Q ss_pred             CCcccceEeeccCCCceeEEee-eCC--Ccc------EEcCCCCEEEEEecCCCceeEEEEECCCCC-eeE-Eee-cC--
Q 039497          308 GQSTIPHLEPVASPVKELRMLR-LNG--SFP------SFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWT-LIK-DR--  373 (642)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~------~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-~~~-l~~-~~--  373 (642)
                         ..+|  .+......+.... ...  ..+      .|+|+++.|+....   ...|.++|+..++ ... +.. .+  
T Consensus        92 ---i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~  163 (357)
T 3i2n_A           92 ---LHIW--NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR---DGTVKVWDPRQKDDPVANMEPVQGEN  163 (357)
T ss_dssp             ---EEEE--CTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET---TSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred             ---EEEE--eCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC---CCeEEEEeCCCCCCcceeccccCCCC
Confidence               2222  2222210111111 111  122      56899998887654   3678888988765 233 322 11  


Q ss_pred             --Cceeee----eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC--
Q 039497          374 --TAFYNS----WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP--  445 (642)
Q Consensus       374 --~~~~~~----~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp--  445 (642)
                        .+..+.    |+|+++.|+....       ++.+++|++..         +     ......... ..+..+.|+|  
T Consensus       164 ~~~v~~~~~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~---------~-----~~~~~~~~~-~~v~~~~~~~~~  221 (357)
T 3i2n_A          164 KRDCWTVAFGNAYNQEERVVCAGYD-------NGDIKLFDLRN---------M-----ALRWETNIK-NGVCSLEFDRKD  221 (357)
T ss_dssp             CCCEEEEEEECCCC-CCCEEEEEET-------TSEEEEEETTT---------T-----EEEEEEECS-SCEEEEEESCSS
T ss_pred             CCceEEEEEEeccCCCCCEEEEEcc-------CCeEEEEECcc---------C-----ceeeecCCC-CceEEEEcCCCC
Confidence              445555    8899999988874       67899998754         2     333333344 6778899999  


Q ss_pred             -CCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-----CCCCcccceeEecCCC-EEEEEecCCCCCCCCceeEEEE
Q 039497          446 -DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-----DGPWIDTMPSWSPKGD-LIAFSSNRHNPDNVEAFSLYVI  518 (642)
Q Consensus       446 -Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-----~~~~~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~l~~~  518 (642)
                       ++++|+..+..   ..|.+||+.+++.   ...+.     .+...+..+.|+|+|+ +|+..+.++        .|++|
T Consensus       222 ~~~~~l~~~~~d---g~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------~i~iw  287 (357)
T 3i2n_A          222 ISMNKLVATSLE---GKFHVFDMRTQHP---TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG--------GLHLW  287 (357)
T ss_dssp             SSCCEEEEEEST---TEEEEEEEEEEET---TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS--------EEEEE
T ss_pred             CCCCEEEEECCC---CeEEEEeCcCCCc---ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC--------cEEEe
Confidence             99998887643   3788888877654   23222     5566778899999999 455555544        38888


Q ss_pred             eCCCCceE-----------------Eee-ecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497          519 KPDGSGLR-----------------RIH-VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG  580 (642)
Q Consensus       519 d~~~~~~~-----------------~l~-~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  580 (642)
                      |+..+...                 .+. ...+..       .+..++|+|||+.|+++....+                
T Consensus       288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~s~~~d~----------------  344 (357)
T 3i2n_A          288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-------PISSLDWSPDKRGLCVCSSFDQ----------------  344 (357)
T ss_dssp             EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-------CEEEEEECSSSTTEEEEEETTS----------------
T ss_pred             ecCCCcccccccCCCCccccccccceeeccccCCC-------CeeEEEEcCCCCeEEEEecCCC----------------
Confidence            88654322                 121 122333       5788999999999986554332                


Q ss_pred             cEEEEEcCCC
Q 039497          581 DLYVVKLDGS  590 (642)
Q Consensus       581 ~l~~~~~~~~  590 (642)
                      .|.+|++...
T Consensus       345 ~i~iw~~~~~  354 (357)
T 3i2n_A          345 TVRVLIVTKL  354 (357)
T ss_dssp             EEEEEEECC-
T ss_pred             cEEEEECCCc
Confidence            6778877653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.62  E-value=2e-13  Score=135.92  Aligned_cols=282  Identities=9%  Similarity=0.027  Sum_probs=180.4

Q ss_pred             EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEe
Q 039497          133 TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQ  209 (642)
Q Consensus       133 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~  209 (642)
                      ..+..+.......+| |||++||....++            .|.+|++.+++.......+..   .++|+|++.++++. 
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg------------~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-   77 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDG------------TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFG-   77 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTS------------EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEE-
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCC------------cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEe-
Confidence            344455555566788 9999999887665            799999988876555543332   45999999888887 


Q ss_pred             cCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCee
Q 039497          210 ADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFV  289 (642)
Q Consensus       210 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  289 (642)
                      ..+|...+|.+.......      ....+..+...+..+.|  +++.|+....++     .+.+||.             
T Consensus        78 ~~dg~i~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~-----~i~~~d~-------------  131 (313)
T 3odt_A           78 GKDTMINGVPLFATSGED------PLYTLIGHQGNVCSLSF--QDGVVISGSWDK-----TAKVWKE-------------  131 (313)
T ss_dssp             ETTSCEEEEETTCCTTSC------C-CEECCCSSCEEEEEE--ETTEEEEEETTS-----EEEEEET-------------
T ss_pred             cCCCeEEEEEeeecCCCC------cccchhhcccCEEEEEe--cCCEEEEEeCCC-----CEEEEcC-------------
Confidence            567866666654332110      33445555555555555  677777755443     6777762             


Q ss_pred             cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeE
Q 039497          290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWT  368 (642)
Q Consensus       290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~  368 (642)
                         ++.+...                .   .....       .....|+| +++.++....   ...|.++|... ....
T Consensus       132 ---~~~~~~~----------------~---~~~~~-------v~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~-~~~~  178 (313)
T 3odt_A          132 ---GSLVYNL----------------Q---AHNAS-------VWDAKVVSFSENKFLTASA---DKTIKLWQNDK-VIKT  178 (313)
T ss_dssp             ---TEEEEEE----------------E---CCSSC-------EEEEEEEETTTTEEEEEET---TSCEEEEETTE-EEEE
T ss_pred             ---CcEEEec----------------c---cCCCc-------eeEEEEccCCCCEEEEEEC---CCCEEEEecCc-eEEE
Confidence               0000000                0   00000       11335666 8888777654   35677777322 2122


Q ss_pred             Ee--ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC
Q 039497          369 LI--KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD  446 (642)
Q Consensus       369 l~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD  446 (642)
                      +.  ....+..+.|+|+++ ++....       ++.+.+|++..        +.     ....+..+. ..+..+.|+||
T Consensus       179 ~~~~~~~~i~~~~~~~~~~-~~~~~~-------dg~i~i~d~~~--------~~-----~~~~~~~~~-~~i~~~~~~~~  236 (313)
T 3odt_A          179 FSGIHNDVVRHLAVVDDGH-FISCSN-------DGLIKLVDMHT--------GD-----VLRTYEGHE-SFVYCIKLLPN  236 (313)
T ss_dssp             ECSSCSSCEEEEEEEETTE-EEEEET-------TSEEEEEETTT--------CC-----EEEEEECCS-SCEEEEEECTT
T ss_pred             EeccCcccEEEEEEcCCCe-EEEccC-------CCeEEEEECCc--------hh-----hhhhhhcCC-ceEEEEEEecC
Confidence            22  255688899999998 665553       77899998854        22     455555555 67888999999


Q ss_pred             CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497          447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL  525 (642)
Q Consensus       447 g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  525 (642)
                      | .|+..+.   ...|++||+.+++.   ...+..+...+..+.|+|+|+. +..+.++.        |++|++.+++.
T Consensus       237 ~-~l~~~~~---dg~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~-~~~~~dg~--------i~iw~~~~~~~  299 (313)
T 3odt_A          237 G-DIVSCGE---DRTVRIWSKENGSL---KQVITLPAISIWSVDCMSNGDI-IVGSSDNL--------VRIFSQEKSRW  299 (313)
T ss_dssp             S-CEEEEET---TSEEEEECTTTCCE---EEEEECSSSCEEEEEECTTSCE-EEEETTSC--------EEEEESCGGGC
T ss_pred             C-CEEEEec---CCEEEEEECCCCce---eEEEeccCceEEEEEEccCCCE-EEEeCCCc--------EEEEeCCCCce
Confidence            9 4665553   34899999998886   5666666667788999999994 44555543        99999987654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.62  E-value=7.8e-14  Score=137.03  Aligned_cols=264  Identities=10%  Similarity=0.164  Sum_probs=176.6

Q ss_pred             CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCC-----------Ccce
Q 039497            3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSG-----------SPRI   71 (642)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g-----------~~~l   71 (642)
                      .|+.|+|....+   +..||+++..|     ...++|+....    ..|+ |+|++|+|+..+.+           ...|
T Consensus        24 ~g~~iy~~n~~d---~~~ly~~~~dg-----~~~~~l~~~~~----~~i~-~~g~~Iyy~~~~~~~~~~~~~~~~n~~~I   90 (302)
T 3s25_A           24 SDGEVFFSNTND---NGRLYAMNIDG-----SNIHKLSNDTA----MYIN-ADKNYVYYVRNNNQKITSQTFFSYDRNSL   90 (302)
T ss_dssp             ETTEEEEEEGGG---TTEEEEEETTS-----CSCEEEEEEEE----EEEE-ECSSEEEEEEECC------CCSSCCSEEE
T ss_pred             eCCEEEEEeCCC---CceEEEEcCCC-----CCCEEccCCce----eeEE-EcCCEEEEEECCCCcccccceeccCCCeE
Confidence            577888884321   46899999999     89999997653    4578 99999999987653           4579


Q ss_pred             EEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCC
Q 039497           72 YQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSG  151 (642)
Q Consensus        72 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG  151 (642)
                      |.+..+|.....+.....    ...++++++|+|+......      ...||++++++...++|+.+..    ++++|+|
T Consensus        91 y~i~~dg~~~~~l~~~~~----~~~s~~g~~Iy~~~~~~~~------~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g  156 (302)
T 3s25_A           91 CRIKRNGHGSTVLDPDPC----IYASLIGNYIYYLHYDTQT------ATSLYRIRIDGEEKKKIKNHYL----FTCNTSD  156 (302)
T ss_dssp             EEEETTSCCCEEEECSCE----EEEEEETTEEEEEEESSSS------CEEEEEEETTSCCCEEEESSCC----CCSEEET
T ss_pred             EEEeCCCCcceEeecCCc----cEEEEeCCEEEEEeecCCC------CceEEEEECCCCCeEEEeCCCc----eEeeEEC
Confidence            999888754333332111    1345589999998721111      1279999999999999997754    4679999


Q ss_pred             cEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcceEeeCC-eEEEEEecCCCceEEEEEecCCCccccc
Q 039497          152 KFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDS-TIYFHRQADDGWWSIFRVSFPENLEFLG  230 (642)
Q Consensus       152 ~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~wspdg-~~~~~~~~~~g~~~l~~~~~~~~~~~~~  230 (642)
                      ++|+|....           ...|+++++.++..++|.......| +.|++ .++|+. ..++ .+|++++++++     
T Consensus       157 ~~iy~t~~g-----------~~~Iy~~~l~g~~~~~l~~~~~~~~-~~P~g~~iy~t~-~~~~-~~I~~~~ldG~-----  217 (302)
T 3s25_A          157 RYFYYNNPK-----------NGQLYRYDTASQSEALFYDCNCYKP-VVLDDTNVYYMD-VNRD-NAIVHVNINNP-----  217 (302)
T ss_dssp             TEEEEECTT-----------TCCEEEEETTTTEEEEEECSCEEEE-EEEETTEEEEEE-GGGT-TEEEEECSSSC-----
T ss_pred             CEEEEEeCC-----------CceEEEEECCCCCEEEEeCCCccce-eeecCCEEEEEE-cCCC-cEEEEEECCCC-----
Confidence            999999762           3479999999988887754222234 45887 466655 3233 79999999998     


Q ss_pred             CCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCc
Q 039497          231 FPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQS  310 (642)
Q Consensus       231 ~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  310 (642)
                         ..+.|+....    +.++|+|++|+|+.....   ..|+.                         ...+|.      
T Consensus       218 ---~~~~Lt~~~~----~~~~~~g~~Iy~~~~~~~---~~i~~-------------------------~~~DG~------  256 (302)
T 3s25_A          218 ---NPVVLTEANI----EHYNVYGSLIFYQRGGDN---PALCV-------------------------VKNDGT------  256 (302)
T ss_dssp             ---CCEECSCSCE----EEEEEETTEEEEEECSSS---CEEEE-------------------------EETTSC------
T ss_pred             ---CeEEEeCCCc----ceEEECCCEEEEEECCCC---cEEEE-------------------------EECCCC------
Confidence               6677765442    568999999988643321   12222                         222222      


Q ss_pred             ccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE
Q 039497          311 TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL  369 (642)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l  369 (642)
                                 ..+ .+...  ....+++-+++|+|.....  ..|+.+++++....++
T Consensus       257 -----------~r~-~l~~~--~~~~i~i~~d~Iy~td~~~--~~i~~~~~dGs~~~~l  299 (302)
T 3s25_A          257 -----------GFK-ELAKG--EFCNINVTSQYVYFTDFVS--NKEYCTSTQNPDTIKA  299 (302)
T ss_dssp             -----------CCE-EEEES--CEEEEEECSSEEEEEETTT--CCEEEEESSSCCSCEE
T ss_pred             -----------ccE-EeeCC--ccceEEEeCCEEEEEECCC--CeEEEEECCCCCceEe
Confidence                       111 01110  1225677889999987433  3599999988876665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.60  E-value=6.1e-13  Score=148.87  Aligned_cols=295  Identities=9%  Similarity=0.067  Sum_probs=186.1

Q ss_pred             eCC-eEEEEEecCCCce-EEEEEec---CCC--cccccCCccceeeCC-------CCC-ccccceee-cCCcEEEEEEec
Q 039497          200 GDS-TIYFHRQADDGWW-SIFRVSF---PEN--LEFLGFPIAPTRVTP-------PGV-HCFTPAAF-HDGKRLAVATRR  263 (642)
Q Consensus       200 pdg-~~~~~~~~~~g~~-~l~~~~~---~~~--~~~~~~~~~~~~l~~-------~~~-~~~~~~~S-pdG~~l~~~~~~  263 (642)
                      ++| .+||++....... .+++.+.   .++  .       . +.+..       ++. ....++|| |||++|+|....
T Consensus       124 ~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~-------~-~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~  195 (751)
T 2xe4_A          124 VYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAA-------E-EVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDM  195 (751)
T ss_dssp             EETTEEEEEEECTTCCSCEEEEEETTSCTTCTTT-------C-EEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEES
T ss_pred             EECCEEEEEEECCCCceeEEEEEcCCCCCCCCcC-------C-EEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeC
Confidence            455 6777775444333 5777765   332  1       1 22211       122 45568899 999999999887


Q ss_pred             cCCceeeEEEEEeecC-CCC------cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce-eEEeeeC--C-
Q 039497          264 KNRNFRHIEIYDLTLN-PNF------HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE-LRMLRLN--G-  332 (642)
Q Consensus       264 ~~~~~~~i~~~d~~~~-~~~------~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-  332 (642)
                      .+.....|+++|+..+ ...      ....+.|||||+.|+|.+.+...   ....++...+...... ..+....  . 
T Consensus       196 ~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~---~~~~v~~~~lgt~~~~~~lv~~~~~~~~  272 (751)
T 2xe4_A          196 SGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETL---RENKVWRHVMGKLQSEDVCLYEEHNPLF  272 (751)
T ss_dssp             SSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTC---CEEEEEEEETTSCGGGCEEEEECCCTTC
T ss_pred             CCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCC---CCCEEEEEECCCCchhcEEEEecCCCce
Confidence            7777778999999665 311      13478999999999999765321   1134566666554322 1121111  1 


Q ss_pred             -CccEEcCCCCEEEEEecCCCceeEEEEECCCCC--e--eEEeecCCceeeeeecC---CCEEEEEEcCCCcccCCCeEE
Q 039497          333 -SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--R--WTLIKDRTAFYNSWSPT---EKHVIYTSTGPIFQSERATVQ  404 (642)
Q Consensus       333 -~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~--~~l~~~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~~~  404 (642)
                       ..+.|||||++|++.........||+++++++.  .  +.+...  ...+.|+++   |+.|+|.++..    .....+
T Consensus       273 ~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~s~~~~~g~~l~~~t~~~----~a~~~~  346 (751)
T 2xe4_A          273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR--EKGVRYDVQMHGTSHLVILTNEG----GAVNHK  346 (751)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC--CTTCCEEEEEETTTEEEEEECTT----TCTTCE
T ss_pred             EEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC--CCCceEEEeeeeCCEEEEEeCCC----CCCCcE
Confidence             246899999999998766667899999998763  3  344332  234456666   99999998631    135677


Q ss_pred             EEEEEeecCCCCCCCCCccccceEE-ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEEC-------CCCc-cccc
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKI-LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA-------VNGE-FNGD  475 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~-------~~g~-~~~~  475 (642)
                      |+.++.  +     +..    ..+. +..+. .......+++++++|++...+++..+|+++++       ++|+ .   
T Consensus       347 L~~~d~--~-----~~~----~~~~~li~~~-~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~---  411 (751)
T 2xe4_A          347 LLIAPR--G-----QPS----DWSHVLVDHS-EDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGL---  411 (751)
T ss_dssp             EEEEET--T-----STT----CCCCEEECCC-SSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCC---
T ss_pred             EEEEcC--C-----Ccc----cceeeEECCC-CCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccc---
Confidence            888876  3     110    2333 33222 22222346667889999998889999999996       5555 3   


Q ss_pred             eeeCCCC-CCcccceeE----ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          476 IRQLTDG-PWIDTMPSW----SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       476 ~~~l~~~-~~~~~~~~~----spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                       +.|.-. ......+.+    +++++.|+|......    ....+|.+|+.+++.+.++..
T Consensus       412 -~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~----~P~~~~~~d~~~~~~~~l~~~  467 (751)
T 2xe4_A          412 -REVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLA----TPNTWFDVSPQDHSRTAVKVR  467 (751)
T ss_dssp             -EECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETT----EEEEEEEECTTTCCEEEEEEC
T ss_pred             -eEECCCCceeEEEeccCcccCCCCCEEEEEEeCCC----CCCEEEEEECCCCcEEEEecc
Confidence             555422 122223333    568887777765543    577899999998888777753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.60  E-value=2.5e-13  Score=138.44  Aligned_cols=295  Identities=10%  Similarity=0.056  Sum_probs=174.8

Q ss_pred             CCCccCCceeCCC---CcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-c----C-C--CcceEeeC----C
Q 039497          138 YGVVDYSPSVSYS---GKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-E----R-G--GWPTWSGD----S  202 (642)
Q Consensus       138 ~~~~~~~~~~SPD---G~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~----~-~--~~~~wspd----g  202 (642)
                      +.......+|+|+   |..++++....           ..|.+|++.+++..+... .    . .  ..++|+|+    |
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~~~~~-----------~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   85 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFATVGS-----------NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH   85 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEEEEET-----------TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred             CCCceEEEEEecccCCCCceEEEECCC-----------CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence            3444566789984   55433333222           268999998766543332 1    1 1  24599999    6


Q ss_pred             eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec-CCcEEEEEEeccCCceeeEEEEEeecCCC
Q 039497          203 TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEIYDLTLNPN  281 (642)
Q Consensus       203 ~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~~~~  281 (642)
                      .++++. ..+|  .|..++..++.       ....+..+...+..++|+| +++.|+....++     .|.+||+...  
T Consensus        86 ~~l~~~-~~dg--~i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--  148 (366)
T 3k26_A           86 PLLAVA-GSRG--IIRIINPITMQ-------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDH-----ALRLWNIQTD--  148 (366)
T ss_dssp             EEEEEE-ETTC--EEEEECTTTCC-------EEEEEESCCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTTT--
T ss_pred             CEEEEe-cCCC--EEEEEEchhce-------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCC-----eEEEEEeecC--
Confidence            677776 4567  56666766663       4455666666788899999 899888865544     7899987221  


Q ss_pred             CcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEEC
Q 039497          282 FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKS  361 (642)
Q Consensus       282 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~  361 (642)
                                  +.+...                ..+......       ...+.|+|+|+.|+....   ...|.++++
T Consensus       149 ------------~~~~~~----------------~~~~~~~~~-------v~~~~~~~~~~~l~~~~~---dg~i~i~d~  190 (366)
T 3k26_A          149 ------------TLVAIF----------------GGVEGHRDE-------VLSADYDLLGEKIMSCGM---DHSLKLWRI  190 (366)
T ss_dssp             ------------EEEEEE----------------CSTTSCSSC-------EEEEEECTTSSEEEEEET---TSCEEEEES
T ss_pred             ------------eEEEEe----------------cccccccCc-------eeEEEECCCCCEEEEecC---CCCEEEEEC
Confidence                        111100                000000001       123467777777666543   245666676


Q ss_pred             CCCCeeEE----------------------------e--ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          362 DGSKRWTL----------------------------I--KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       362 ~~~~~~~l----------------------------~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..++....                            .  ....+..+.|+  ++.|+..+       .++.+.+|++.. 
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-------~d~~i~~wd~~~-  260 (366)
T 3k26_A          191 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS-------CENAIVCWKPGK-  260 (366)
T ss_dssp             CSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC-------SSSEEEEEEESS-
T ss_pred             CCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe-------cCCEEEEEeCCC-
Confidence            65432110                            0  23457778888  66666654       378899999865 


Q ss_pred             cCCCC---CCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCcccc-ceeeCCCC--C
Q 039497          412 LDPSD---DNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDG--P  483 (642)
Q Consensus       412 ~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~-~~~~l~~~--~  483 (642)
                       ....   .............+..+. ..+..+.|+||  |++|+..+.   ...|++||+.+++... ....+..+  .
T Consensus       261 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~  335 (366)
T 3k26_A          261 -MEDDIDKIKPSESNVTILGRFDYSQ-CDIWYMRFSMDFWQKMLALGNQ---VGKLYVWDLEVEDPHKAKCTTLTHHKCG  335 (366)
T ss_dssp             -TTCCGGGCCTTCCCEEEEEEEECSS-CCSSCCCCEECTTSSEEEEECT---TSCEEEEECCSSSGGGCEEEEECCTTCC
T ss_pred             -ccccccccccCCcchheeccccccC-CcEEEEEEcCCCCCcEEEEEec---CCcEEEEECCCCCCccccceEEcccccC
Confidence             1000   000000000133333343 56778899999  998887753   3479999999876310 12245544  4


Q ss_pred             CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      ..+..+.|+|||++|+..+.++.        |++||+.
T Consensus       336 ~~v~~~~~s~~~~~l~s~~~dg~--------i~iwd~~  365 (366)
T 3k26_A          336 AAIRQTSFSRDSSILIAVCDDAS--------IWRWDRL  365 (366)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSE--------EEEEEC-
T ss_pred             CceEEEEeCCCCCeEEEEeCCCE--------EEEEEec
Confidence            67788999999999998887764        8999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.60  E-value=7.7e-13  Score=133.19  Aligned_cols=231  Identities=14%  Similarity=0.074  Sum_probs=143.8

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCC-----eeEE--ee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-----RWTL--IK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ  404 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-----~~~l--~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  404 (642)
                      ..+|+|+|+.|+..+. +  ..|.++++....     ...+  ..  ...+..+.|+|||++|+..+.       ++.++
T Consensus        63 ~v~~sp~~~~las~s~-D--~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-------D~~v~  132 (330)
T 2hes_X           63 SVAWRPHTSLLAAGSF-D--STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-------DKSVW  132 (330)
T ss_dssp             EEEECTTSSEEEEEET-T--SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET-------TSCEE
T ss_pred             EEEECCCCCEEEEEeC-C--CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-------CCEEE
Confidence            4589999998887664 2  456666764321     1111  11  456889999999999988874       78999


Q ss_pred             EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                      +|++..  .      +.. ......+..+. ..+..+.|+||++.|+..+.+   ..|.+|+..++.. ..+..+..+..
T Consensus       133 iwd~~~--~------~~~-~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D---~~i~iW~~~~~~~-~~~~~~~~h~~  198 (330)
T 2hes_X          133 IWETDE--S------GEE-YECISVLQEHS-QDVKHVIWHPSEALLASSSYD---DTVRIWKDYDDDW-ECVAVLNGHEG  198 (330)
T ss_dssp             EEECCT--T------CCC-CEEEEEECCCS-SCEEEEEECSSSSEEEEEETT---SCEEEEEEETTEE-EEEEEECCCSS
T ss_pred             EEeccC--C------CCC-eEEEEEeccCC-CceEEEEECCCCCEEEEEcCC---CeEEEEECCCCCe-eEEEEccCCCC
Confidence            999853  1      110 00233445554 678889999999998877643   3677788765521 01455666777


Q ss_pred             cccceeEecC--CCEEEEEecCCCCCCCCceeEEEEeCCCCce------EEee--ecCCCCCCCcccccccceEEcCCCC
Q 039497          485 IDTMPSWSPK--GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL------RRIH--VAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       485 ~~~~~~~spd--G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~------~~l~--~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      .+..+.|+|+  +..|+..+.++.        |.+||+.++..      ..+.  ...+..       .+..++|++++ 
T Consensus       199 ~v~~~~~~~~~~~~~l~s~s~D~~--------v~iw~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~v~~s~~~-  262 (330)
T 2hes_X          199 TVWSSDFDKTEGVFRLCSGSDDST--------VRVWKYMGDDEDDQQEWVCEAILPDVHKR-------QVYNVAWGFNG-  262 (330)
T ss_dssp             CEEEEEECCSSSSCEEEEEETTSC--------EEEEEEEEECTTSCEEEEEEEECCSCCSS-------CEEEEEECTTS-
T ss_pred             cEEEEEecCCCCeeEEEEEeCCCe--------EEEEEecCCCccccceeEEeeeccccccc-------ceEEEEEcCCC-
Confidence            7888999999  677777776654        88888754311      1111  111333       57889999766 


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce----eeccCCCC-CCCCcEEec--CCceEEeecCCC
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL----RRLTWNGY-ENGTPAWHP--GNQLDLGKLRLE  621 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~lt~~~~-~~~~~~~s~--dg~~~~~~~~~~  621 (642)
                      .|+..+.++                 .|.+|+...++.    ..+..+.. .+..++|+|  |+++|++....+
T Consensus       263 ~l~s~~~dg-----------------~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          263 LIASVGADG-----------------VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             CEEEEETTS-----------------CEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred             EEEEEeCCC-----------------EEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence            566555543                 567777666532    22233443 567889999  788888765544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.60  E-value=2.3e-13  Score=140.98  Aligned_cols=287  Identities=12%  Similarity=0.048  Sum_probs=173.8

Q ss_pred             cccCCCccCCceeCC-CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-------------cCC---Ccce
Q 039497          135 LTPYGVVDYSPSVSY-SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-------------ERG---GWPT  197 (642)
Q Consensus       135 lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-------------~~~---~~~~  197 (642)
                      +..+.......+||| ||++||....++            .|.+|++.+++......             .+.   ..+.
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  106 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDG------------VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ  106 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTS------------CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCC------------eEEEEECCCCcccceEeccccccccccccccCCCcEEEEE
Confidence            344555567789999 999999987665            69999999886543332             011   2459


Q ss_pred             Eee-CCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeec---CCcEEEEEEeccCCceeeEEE
Q 039497          198 WSG-DSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFH---DGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       198 wsp-dg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sp---dG~~l~~~~~~~~~~~~~i~~  273 (642)
                      |+| ++.++++. ..+|  .|..+++.++        ...........+....++|   ++..++.....+     .+.+
T Consensus       107 ~~~~~~~~l~s~-~~d~--~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~  170 (408)
T 4a11_B          107 WYPHDTGMFTSS-SFDK--TLKVWDTNTL--------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP-----KVQL  170 (408)
T ss_dssp             ECTTCTTCEEEE-ETTS--EEEEEETTTT--------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS-----SEEE
T ss_pred             EccCCCcEEEEE-eCCC--eEEEeeCCCC--------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCC-----eEEE
Confidence            999 55677766 4567  4555566666        2333322333445556655   555777754443     7888


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  353 (642)
                      ||+.....                              .   ..+....       .....+.|+|+++++++...  ..
T Consensus       171 ~d~~~~~~------------------------------~---~~~~~~~-------~~v~~~~~~~~~~~ll~~~~--~d  208 (408)
T 4a11_B          171 CDLKSGSC------------------------------S---HILQGHR-------QEILAVSWSPRYDYILATAS--AD  208 (408)
T ss_dssp             EESSSSCC------------------------------C---EEECCCC-------SCEEEEEECSSCTTEEEEEE--TT
T ss_pred             EeCCCcce------------------------------e---eeecCCC-------CcEEEEEECCCCCcEEEEEc--CC
Confidence            88732110                              0   0000000       01124589999996444332  23


Q ss_pred             eeEEEEECCCCCe--eEE----------------eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497          354 AGIKIAKSDGSKR--WTL----------------IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS  415 (642)
Q Consensus       354 ~~l~~~d~~~~~~--~~l----------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  415 (642)
                      ..|.++|+..+..  ..+                .....+..+.|+|+++.|+..+.       ++.+++|++..     
T Consensus       209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~-----  276 (408)
T 4a11_B          209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-------DNRMRLWNSSN-----  276 (408)
T ss_dssp             SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTT-----
T ss_pred             CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-------CCeEEEEECCC-----
Confidence            5678888865541  111                01345778999999999988874       67899999865     


Q ss_pred             CCCCCCccccceEEccc----cCCCCccCcEE-CCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCccccee
Q 039497          416 DDNNREEIPCDVKILTK----EETGNNAFPSC-SPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPS  490 (642)
Q Consensus       416 ~~~~~~~~~~~~~~l~~----~~~~~~~~~~~-SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~  490 (642)
                         +.     ....+..    .. .......+ ...+..+++....   ..|.+||+.+++.   +..+..+...+..++
T Consensus       277 ---~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~~---~~~~~~~~~~v~~~~  341 (408)
T 4a11_B          277 ---GE-----NTLVNYGKVCNNS-KKGLKFTVSCGCSSEFVFVPYG---STIAVYTVYSGEQ---ITMLKGHYKTVDCCV  341 (408)
T ss_dssp             ---CC-----BCCCCCCCCCCCC-SSCCCCEECCSSSSCEEEEEET---TEEEEEETTTCCE---EEEECCCSSCEEEEE
T ss_pred             ---Cc-----cceeccccccccc-cccceeEEecCCCceEEEEecC---CEEEEEECcCCcc---eeeeccCCCeEEEEE
Confidence               11     1111110    00 11111222 2234455555532   3899999999886   677777777888899


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                      |+|||++|+..+.++.        |++|++..++..
T Consensus       342 ~s~~~~~l~s~~~dg~--------i~iw~~~~~~~~  369 (408)
T 4a11_B          342 FQSNFQELYSGSRDCN--------ILAWVPSLYEPV  369 (408)
T ss_dssp             EETTTTEEEEEETTSC--------EEEEEECC----
T ss_pred             EcCCCCEEEEECCCCe--------EEEEeCCCCCcc
Confidence            9999999998887765        999999876543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.2e-12  Score=131.70  Aligned_cols=280  Identities=15%  Similarity=0.050  Sum_probs=163.0

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceee-CC-CCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV-TP-PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      ..|+|+  ++++. ..++...||.+......       ....+ .. +...+..++|+|+|++|+....++     .+.+
T Consensus        20 ~~~s~~--~las~-~~D~~i~lw~~~~~~~~-------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~-----~v~i   84 (330)
T 2hes_X           20 FDFSQG--ILATG-STDRKIKLVSVKYDDFT-------LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS-----TVSI   84 (330)
T ss_dssp             EEEETT--EEEEE-ESSSCEEEEECSSSCCE-------EEEEECTTCCCSCEEEEEECTTSSEEEEEETTS-----CEEE
T ss_pred             eccCCC--EEEEE-cCCCEEEEEEecCCCeE-------EEEEEecCCccCCEEEEEECCCCCEEEEEeCCC-----cEEE
Confidence            477887  56655 56786677655432221       22333 23 555688899999999988865544     7899


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  353 (642)
                      ||+.......       ...+                   .+..+.+.       ........|+|+|++|+..+.   .
T Consensus        85 w~~~~~~~~~-------~~~~-------------------~~~~~~~h-------~~~V~~v~~sp~g~~las~s~---D  128 (330)
T 2hes_X           85 WAKEESADRT-------FEMD-------------------LLAIIEGH-------ENEVKGVAWSNDGYYLATCSR---D  128 (330)
T ss_dssp             EEC--------------CCCE-------------------EEEEEC-----------CEEEEEECTTSCEEEEEET---T
T ss_pred             EEcccCcCcc-------ccce-------------------eEEEEcCC-------CCcEEEEEECCCCCEEEEEeC---C
Confidence            9873211000       0000                   00001110       011135689999998888664   3


Q ss_pred             eeEEEEECC-CCCe-eEEe--e--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497          354 AGIKIAKSD-GSKR-WTLI--K--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV  427 (642)
Q Consensus       354 ~~l~~~d~~-~~~~-~~l~--~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  427 (642)
                      ..|.++++. .+.. ..+.  .  ...+..+.|+|+++.|+..+.       ++.+++|++..        +..+   ..
T Consensus       129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-------D~~i~iW~~~~--------~~~~---~~  190 (330)
T 2hes_X          129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY-------DDTVRIWKDYD--------DDWE---CV  190 (330)
T ss_dssp             SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET-------TSCEEEEEEET--------TEEE---EE
T ss_pred             CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC-------CCeEEEEECCC--------CCee---EE
Confidence            567777874 3221 2221  1  456889999999999888774       78999999865        1100   33


Q ss_pred             EEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccc-----cceeeCCC-CCCcccceeEecCCCEEE
Q 039497          428 KILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFN-----GDIRQLTD-GPWIDTMPSWSPKGDLIA  499 (642)
Q Consensus       428 ~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~-----~~~~~l~~-~~~~~~~~~~spdG~~l~  499 (642)
                      ..+..+. ..+..+.|+|+  +..|+..+. ++  .|.+|++.++...     .....+.. +...+..++|++++ .|+
T Consensus       191 ~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~-D~--~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~  265 (330)
T 2hes_X          191 AVLNGHE-GTVWSSDFDKTEGVFRLCSGSD-DS--TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIA  265 (330)
T ss_dssp             EEECCCS-SCEEEEEECCSSSSCEEEEEET-TS--CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred             EEccCCC-CcEEEEEecCCCCeeEEEEEeC-CC--eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEE
Confidence            4455555 67888999999  566665553 33  5667776543100     00223333 45567788999776 566


Q ss_pred             EEecCCCCCCCCceeEEEEeCCCCceEEeee--cCCCCCCCcccccccceEEcC--CCCEEEEEEecC
Q 039497          500 FSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV--AGPEGSGDVDRERINHVCFSA--DGEWLLFTANLG  563 (642)
Q Consensus       500 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~S~--Dg~~l~~~~~~~  563 (642)
                      ..+.++.        |.+|+..+++.+.+..  ..+..      ..+..++|+|  |++.|+..+.++
T Consensus       266 s~~~dg~--------v~iw~~~~~~~~~~~~~~~~h~~------~~v~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          266 SVGADGV--------LAVYEEVDGEWKVFAKRALCHGV------YEINVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             EEETTSC--------EEEEEEETTEEEEEEEESCTTTT------SCEEEEEEC-----CCEEEEETTS
T ss_pred             EEeCCCE--------EEEEEcCCCceEEEecccccccc------ceEEEEEEecCCCceEEEEecCCC
Confidence            6666654        8889987765433322  12211      0356789999  788887777664

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.60  E-value=5e-14  Score=144.65  Aligned_cols=253  Identities=8%  Similarity=0.056  Sum_probs=153.1

Q ss_pred             CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          194 GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       194 ~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      ..++|+|||+++++. ..++...||.+......       ....+..+...+..++|+|+|++|+....++     .+.+
T Consensus        15 ~~~~~s~~g~~l~~~-~~d~~i~iw~~~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~-----~v~v   81 (377)
T 3dwl_C           15 YEHAFNSQRTEFVTT-TATNQVELYEQDGNGWK-------HARTFSDHDKIVTCVDWAPKSNRIVTCSQDR-----NAYV   81 (377)
T ss_dssp             SCCEECSSSSEEECC-CSSSCBCEEEEETTEEE-------ECCCBCCCSSCEEEEEECTTTCCEEEEETTS-----SEEE
T ss_pred             EEEEECCCCCEEEEe-cCCCEEEEEEccCCceE-------EEEEEecCCceEEEEEEeCCCCEEEEEeCCC-----eEEE
Confidence            357999999888776 45787777776532101       3445566666788899999999998866544     7888


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  353 (642)
                      ||+......                             . ....+.....       ....+.|+|+|+.|+....   .
T Consensus        82 wd~~~~~~~-----------------------------~-~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~---d  121 (377)
T 3dwl_C           82 YEKRPDGTW-----------------------------K-QTLVLLRLNR-------AATFVRWSPNEDKFAVGSG---A  121 (377)
T ss_dssp             C------CC-----------------------------C-CEEECCCCSS-------CEEEEECCTTSSCCEEEES---S
T ss_pred             EEcCCCCce-----------------------------e-eeeEecccCC-------ceEEEEECCCCCEEEEEec---C
Confidence            887332100                             0 0000000001       1124588999998888664   3


Q ss_pred             eeEEEEECCCCC----eeEEe--ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC-----CCCCCc
Q 039497          354 AGIKIAKSDGSK----RWTLI--KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD-----DNNREE  422 (642)
Q Consensus       354 ~~l~~~d~~~~~----~~~l~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~  422 (642)
                      ..|.+++++.++    ...+.  ....+..+.|+|+++.|+..+.       ++.+++|++..  ....     .+-+..
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~--~~~~~~~~~~~~~~~  192 (377)
T 3dwl_C          122 RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA-------DRKAYVLSAYV--RDVDAKPEASVWGSR  192 (377)
T ss_dssp             SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES-------SSCEEEEEECC--SSCC-CCCSCSSCSC
T ss_pred             CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC-------CCEEEEEEEEe--cccCCCccccccccc
Confidence            567888887765    23343  2556889999999999988874       68899999853  1000     000000


Q ss_pred             c--ccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-cceeeCCCCCCcccceeEecCCCEEE
Q 039497          423 I--PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN-GDIRQLTDGPWIDTMPSWSPKGDLIA  499 (642)
Q Consensus       423 ~--~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~~~~~l~~~~~~~~~~~~spdG~~l~  499 (642)
                      +  ......+ .+. ..+..+.|+|||++|+..+.+   ..|.+||+.+++.+ ..+..+..+...+..+.|+|||++|+
T Consensus       193 ~~~~~~~~~~-~~~-~~v~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  267 (377)
T 3dwl_C          193 LPFNTVCAEY-PSG-GWVHAVGFSPSGNALAYAGHD---SSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVA  267 (377)
T ss_dssp             CCEEEEEECC-CCS-SSEEEEEECTTSSCEEEEETT---TEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEE
T ss_pred             cchhhhhhcc-cCC-ceEEEEEECCCCCEEEEEeCC---CcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEE
Confidence            0  0012222 333 567889999999999888743   37889998877630 00133445556678899999999877


Q ss_pred             EEecCCCCCCCCceeEEEEeCCC
Q 039497          500 FSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       500 ~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      ..+.+.         +.+|+...
T Consensus       268 ~~~~~~---------~~~~~~~~  281 (377)
T 3dwl_C          268 AGYNYS---------PILLQGNE  281 (377)
T ss_dssp             EESSSS---------EEEECCCC
T ss_pred             EEcCCc---------EEEEEeCC
Confidence            665443         56777653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.60  E-value=4.8e-13  Score=135.44  Aligned_cols=282  Identities=12%  Similarity=0.071  Sum_probs=158.7

Q ss_pred             CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cC---CCcceEeeCCeEEEEEecCCCceEEE
Q 039497          143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ER---GGWPTWSGDSTIYFHRQADDGWWSIF  218 (642)
Q Consensus       143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~---~~~~~wspdg~~~~~~~~~~g~~~l~  218 (642)
                      ..++++++++.++......            .|++|++.+++..+... ..   ...++|+|||+.+|+....++  .|+
T Consensus         3 ~g~~~~~~~~~~v~~~~~~------------~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~--~i~   68 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTNYPN------------NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG--DIY   68 (349)
T ss_dssp             -CCCCCTTCEEEEEEETTT------------EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTT--EEE
T ss_pred             ccccccCCCEEEEEeCCCC------------eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCC--cEE
Confidence            4578899998888776555            79999999887655443 32   235699999976655534444  788


Q ss_pred             EEecCCCcccccCCccceeeCCC------CCccccceeecCCcEEEEEEecc-------CCceeeEEEEEeecCCCCccc
Q 039497          219 RVSFPENLEFLGFPIAPTRVTPP------GVHCFTPAAFHDGKRLAVATRRK-------NRNFRHIEIYDLTLNPNFHHY  285 (642)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~SpdG~~l~~~~~~~-------~~~~~~i~~~d~~~~~~~~~~  285 (642)
                      .+++.++.       ....+...      +.....++|||||++|++.....       +.....+.+||+......   
T Consensus        69 ~~d~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---  138 (349)
T 1jmx_B           69 GIDLDTCK-------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA---  138 (349)
T ss_dssp             EEETTTTE-------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB---
T ss_pred             EEeCCCCc-------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc---
Confidence            88988773       22233222      12356788999999999876430       000125666665221000   


Q ss_pred             CCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCC
Q 039497          286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK  365 (642)
Q Consensus       286 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~  365 (642)
                                               ......          ........+.|+|||+ +++..     ..|+++|+.+++
T Consensus       139 -------------------------~~~~~~----------~~~~~~~~~~~s~dg~-l~~~~-----~~i~~~d~~~~~  177 (349)
T 1jmx_B          139 -------------------------KPVRTF----------PMPRQVYLMRAADDGS-LYVAG-----PDIYKMDVKTGK  177 (349)
T ss_dssp             -------------------------CCSEEE----------ECCSSCCCEEECTTSC-EEEES-----SSEEEECTTTCC
T ss_pred             -------------------------ceeeec----------cCCCcccceeECCCCc-EEEcc-----CcEEEEeCCCCc
Confidence                                     000000          0001123456999999 55432     349999998877


Q ss_pred             eeEEeecCC--------------------------ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497          366 RWTLIKDRT--------------------------AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN  419 (642)
Q Consensus       366 ~~~l~~~~~--------------------------~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  419 (642)
                      .........                          ...+.+++|+......        ......++.++.  .     +
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~~~~~~~~~--~-----~  242 (349)
T 1jmx_B          178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT--------ADLLYGYLSVDL--K-----T  242 (349)
T ss_dssp             EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC--------CEEEEEEEEEET--T-----T
T ss_pred             eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc--------cccceeEEEEec--c-----C
Confidence            655433111                          1112233332111000        001112222333  1     1


Q ss_pred             CCccccceEEcc--ccCCCCccCcEECC-CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCC
Q 039497          420 REEIPCDVKILT--KEETGNNAFPSCSP-DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGD  496 (642)
Q Consensus       420 ~~~~~~~~~~l~--~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~  496 (642)
                      +     +.+.+.  ... .....+.||| ||++|+..     ...|++||+.+++.   +..+.. ......++|+|||+
T Consensus       243 ~-----~~~~~~~~~~~-~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~---~~~~~~-~~~~~~~~~s~dg~  307 (349)
T 1jmx_B          243 G-----KTHTQEFADLT-ELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKL---IKAANL-DHTYYCVAFDKKGD  307 (349)
T ss_dssp             C-----CEEEEEEEECS-SCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEE---EEEEEC-SSCCCEEEECSSSS
T ss_pred             C-----cEEecccccCC-CcceeeEecCCCCCEEEEE-----cCeEEEEECccCeE---EEEEcC-CCCccceEECCCCC
Confidence            1     222221  111 3456789999 99998877     23899999998885   344432 23456789999999


Q ss_pred             EEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          497 LIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       497 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                      +|++....        ..|++||+++++...
T Consensus       308 ~l~~~~~~--------~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          308 KLYLGGTF--------NDLAVFNPDTLEKVK  330 (349)
T ss_dssp             CEEEESBS--------SEEEEEETTTTEEEE
T ss_pred             EEEEecCC--------CeEEEEeccccceee
Confidence            98885433        349999998776543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.60  E-value=1.9e-12  Score=129.14  Aligned_cols=271  Identities=14%  Similarity=0.128  Sum_probs=172.8

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeC--CCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT--PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      ++||+++ +++++.  ++  .|..+|..+++       ....+.  .+...+..++|+|+|++|+....++     .+.+
T Consensus        31 l~WS~~~-~lAvg~--D~--tV~iWd~~tg~-------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg-----~v~i   93 (318)
T 4ggc_A           31 VDWSSGN-VLAVAL--DN--SVYLWSASSGD-------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-----EVQL   93 (318)
T ss_dssp             EEECTTS-EEEEEE--TT--EEEEEETTTCC-------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTS-----EEEE
T ss_pred             EEECCCC-EEEEEe--CC--EEEEEECCCCC-------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCC-----cEEE
Confidence            5999997 555542  56  56667877773       223333  3455678899999999999865444     8899


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  353 (642)
                      ||+..              ++.+...                            .........++++++.++....   .
T Consensus        94 w~~~~--------------~~~~~~~----------------------------~~h~~~~~~~~~~~~~l~s~~~---~  128 (318)
T 4ggc_A           94 WDVQQ--------------QKRLRNM----------------------------TSHSARVGSLSWNSYILSSGSR---S  128 (318)
T ss_dssp             EETTT--------------TEEEEEE----------------------------ECCSSCEEEEEEETTEEEEEET---T
T ss_pred             eecCC--------------ceeEEEe----------------------------cCccceEEEeecCCCEEEEEec---C
Confidence            98732              1111111                            0011112245666776666543   2


Q ss_pred             eeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          354 AGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      ..+..++...........   ...+....++++++.|+....       ++.+++|++..        +. .........
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-------d~~i~iwd~~~--------~~-~~~~~~~~~  192 (318)
T 4ggc_A          129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-------DNLVNVWPSAP--------GE-GGWVPLQTF  192 (318)
T ss_dssp             SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-------TSCEEEEESSC--------BT-TBSCCSEEE
T ss_pred             CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec-------CcceeEEECCC--------Cc-ccccceeee
Confidence            455555655544332222   556778899999999887764       78899999865        11 100012222


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      .... ..+....++|++..++..........|.+|+...+..    .........+....|+|+++.++..+...     
T Consensus       193 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~sg~~-----  262 (318)
T 4ggc_A          193 TQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDAHSQVCSILWSPHYKELISGHGFA-----  262 (318)
T ss_dssp             CCCC-SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE----EEEEECSSCEEEEEEETTTTEEEEEECTT-----
T ss_pred             cccC-CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc----cccccceeeeeeeeecccccceEEEEEcC-----
Confidence            3333 4567788999988877655444556889999987764    33334445567789999999998876432     


Q ss_pred             CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                       ...|++||+.+++...... ++.+       .+..++|||||++|+..+.++
T Consensus       263 -d~~i~iwd~~~~~~~~~l~-gH~~-------~V~~l~~spdg~~l~S~s~D~  306 (318)
T 4ggc_A          263 -QNQLVIWKYPTMAKVAELK-GHTS-------RVLSLTMSPDGATVASAAADE  306 (318)
T ss_dssp             -TCCEEEEETTTCCEEEEEC-CCSS-------CEEEEEECTTSSCEEEEETTT
T ss_pred             -CCEEEEEECCCCcEEEEEc-CCCC-------CEEEEEEcCCCCEEEEEecCC
Confidence             1239999998877654433 4555       688999999999998877665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.59  E-value=1.2e-12  Score=133.82  Aligned_cols=272  Identities=9%  Similarity=-0.040  Sum_probs=152.3

Q ss_pred             eEEEEccCCceEeccc----CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEec-CCCceeEee-cC-C-
Q 039497          122 LYSTDLKASKFTRLTP----YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES-DPNKRVIVC-ER-G-  193 (642)
Q Consensus       122 l~~~~~~~~~~~~lt~----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~l~~-~~-~-  193 (642)
                      +|.++.++|+.+.+..    ........+|||||++|+.+..+             .|.+|++. +|+..++.. .. + 
T Consensus        18 ~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-------------~v~~~~~~~~g~~~~~~~~~~~g~   84 (365)
T 1jof_A           18 TVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-------------KWSSFAVKSPTEIVHEASHPIGGH   84 (365)
T ss_dssp             EEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-------------EEEEEEEEETTEEEEEEEEECCSS
T ss_pred             EEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-------------eEEEEEECCCCCEEEeeEeecCCC
Confidence            4445567787766643    12234568899999998766531             58888886 776554433 11 2 


Q ss_pred             -CcceEeeCCeE--EEEEe-------c-----CCCceEEEEEecCCCcccccCCccceeeC----CCCCccccceeecCC
Q 039497          194 -GWPTWSGDSTI--YFHRQ-------A-----DDGWWSIFRVSFPENLEFLGFPIAPTRVT----PPGVHCFTPAAFHDG  254 (642)
Q Consensus       194 -~~~~wspdg~~--~~~~~-------~-----~~g~~~l~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~SpdG  254 (642)
                       ..++|+|||+.  +++.+       .     .+|...+|.++..+.        ....+.    ........++|||||
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~spdG  156 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK--------LEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC--------EEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc--------CcceEeeEEeCCCCcceEEEECCCC
Confidence             23599999974  33432       1     466666776654443        222222    123346678899999


Q ss_pred             cEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCc
Q 039497          255 KRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSF  334 (642)
Q Consensus       255 ~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (642)
                      ++|+++...    ...|++|++..             +|+.......               .....       ......
T Consensus       157 ~~l~~~~~~----~~~v~~~~~~~-------------~g~~~~~~~~---------------~~~~~-------g~~p~~  197 (365)
T 1jof_A          157 TYLYSADLT----ANKLWTHRKLA-------------SGEVELVGSV---------------DAPDP-------GDHPRW  197 (365)
T ss_dssp             SEEEEEETT----TTEEEEEEECT-------------TSCEEEEEEE---------------ECSST-------TCCEEE
T ss_pred             CEEEEEcCC----CCEEEEEEECC-------------CCCEEEeeeE---------------ecCCC-------CCCCCE
Confidence            988765322    23688887721             1211100000               00000       001124


Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE----Eee--cC------------Cceeee-eecCCCEEEEEEcCCC
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT----LIK--DR------------TAFYNS-WSPTEKHVIYTSTGPI  395 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~----l~~--~~------------~~~~~~-~spdg~~l~~~~~~~~  395 (642)
                      +.|+|||++|++....++...+|.++.++++...    +..  .+            ....+. |||||++|+.......
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            5899999988777654444455555655555321    221  11            356788 9999999977654200


Q ss_pred             cccCCCeEEEEEEEeecCCCCCCCCCccccceEE----ccccCCCCccCcEECC---CCCeEEEEeCCCCceeEEEEECC
Q 039497          396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKI----LTKEETGNNAFPSCSP---DGKFLVFRSGRSGHKNLFVLDAV  468 (642)
Q Consensus       396 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~Sp---Dg~~l~~~~~~~g~~~l~~~d~~  468 (642)
                      . ...+.+.+|+++.        .+     ....    +.... .....++|||   ||++|+++...++  .|.+|+++
T Consensus       278 ~-~~~~~i~v~~~~~--------~g-----~~~~~~~~~~~~~-~~~~~~a~sp~~~dg~~l~v~~~~~~--~v~v~~~~  340 (365)
T 1jof_A          278 F-ELQGYIAGFKLRD--------CG-----SIEKQLFLSPTPT-SGGHSNAVSPCPWSDEWMAITDDQEG--WLEIYRWK  340 (365)
T ss_dssp             T-TSCCEEEEEEECT--------TS-----CEEEEEEEEECSS-CCTTCCCEEECTTCTTEEEEECSSSC--EEEEEEEE
T ss_pred             C-CCCCeEEEEEECC--------CC-----CEEEeeeeeecCC-CCcccceecCCCcCCCEEEEEEcCCC--eEEEEEEc
Confidence            0 0012788998864        23     2332    21122 3456789999   8999988875444  45555554


Q ss_pred             CC
Q 039497          469 NG  470 (642)
Q Consensus       469 ~g  470 (642)
                      ..
T Consensus       341 ~~  342 (365)
T 1jof_A          341 DE  342 (365)
T ss_dssp             TT
T ss_pred             hh
Confidence            33

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.59  E-value=2.2e-13  Score=143.55  Aligned_cols=191  Identities=7%  Similarity=-0.005  Sum_probs=133.7

Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc--ccCCCCccCcEECCCCCeEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT--KEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~SpDg~~l~  451 (642)
                      .+..+.|+|||+.|+++..      .++.+++|++..  ..    +.     ....+.  ... ..+..+.|+|||++|+
T Consensus       104 ~v~~~~~s~d~~~l~~~~~------~dg~v~iwd~~~--~~----~~-----~~~~~~~~~~~-~~v~~~~~sp~~~~l~  165 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACAD------SDKSLLVFDVDK--TS----KN-----VLKLRKRFCFS-KRPNAISIAEDDTTVI  165 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEG------GGTEEEEEEECS--SS----SS-----CEEEEEEEECS-SCEEEEEECTTSSEEE
T ss_pred             ceEEEEEcCCCCEEEEEEC------CCCeEEEEECcC--CC----Cc-----eeeeeecccCC-CCceEEEEcCCCCEEE
Confidence            4778999999999866663      378999999972  10    22     344443  223 5677899999999998


Q ss_pred             EEeCCCCceeEEEEECCCCcccc-ceeeCCCCCCcccceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFNG-DIRQLTDGPWIDTMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~~-~~~~l~~~~~~~~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                      ..+.   ...|++|++.+++... ....+..+...+..+.|+||   +++|+..+.++.        |++||+.+++...
T Consensus       166 ~~~~---~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~--------i~vwd~~~~~~~~  234 (450)
T 2vdu_B          166 IADK---FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH--------IKISHYPQCFIVD  234 (450)
T ss_dssp             EEET---TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC--------EEEEEESCTTCEE
T ss_pred             EEeC---CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc--------EEEEECCCCceee
Confidence            8864   3479999998776400 01144445566788899999   888888877654        9999998776554


Q ss_pred             eeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-eeccC---------
Q 039497          528 IHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RRLTW---------  597 (642)
Q Consensus       528 l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lt~---------  597 (642)
                      ....++..       .+..+.|+ ||++|+..+.++                 .|.+||+..++. ..+..         
T Consensus       235 ~~~~~h~~-------~v~~~~~s-d~~~l~s~~~d~-----------------~v~vwd~~~~~~~~~~~~~~~~~~~~~  289 (450)
T 2vdu_B          235 KWLFGHKH-------FVSSICCG-KDYLLLSAGGDD-----------------KIFAWDWKTGKNLSTFDYNSLIKPYLN  289 (450)
T ss_dssp             EECCCCSS-------CEEEEEEC-STTEEEEEESSS-----------------EEEEEETTTCCEEEEEECHHHHGGGCC
T ss_pred             eeecCCCC-------ceEEEEEC-CCCEEEEEeCCC-----------------eEEEEECCCCcEeeeecchhhhhhhhh
Confidence            32334444       67889999 999998877554                 789999887763 33321         


Q ss_pred             ----------------CCCCCCCcEEecCCceEEeec
Q 039497          598 ----------------NGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       598 ----------------~~~~~~~~~~s~dg~~~~~~~  618 (642)
                                      ....+..+.|+|+++++++..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          290 DQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             TTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             hcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence                            123345789999998886654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.59  E-value=7.2e-13  Score=131.25  Aligned_cols=242  Identities=12%  Similarity=0.106  Sum_probs=152.4

Q ss_pred             CCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeec
Q 039497          239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPV  318 (642)
Q Consensus       239 ~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~  318 (642)
                      ..+...+..++|+|||++|+....++     .+++||+....            ++                .   +..+
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~-----~v~iw~~~~~~------------~~----------------~---~~~l   49 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDK-----TIKIFEVEGET------------HK----------------L---IDTL   49 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEBCSSC------------BC----------------C---CEEE
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCC-----EEEEEecCCCC------------cE----------------E---EEEE
Confidence            44555677889999999998865544     78899873210            00                0   0001


Q ss_pred             cCCCceeEEeeeCCCccEEcCC--CCEEEEEecCCCceeEEEEECCCCCeeE---Ee-ecCCceeeeeecC--CCEEEEE
Q 039497          319 ASPVKELRMLRLNGSFPSFSPD--GGLIVFNHDFELNAGIKIAKSDGSKRWT---LI-KDRTAFYNSWSPT--EKHVIYT  390 (642)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~l~~~d~~~~~~~~---l~-~~~~~~~~~~spd--g~~l~~~  390 (642)
                      .+....       .....|+++  |+.|+..+.   ...|.++++.+++...   +. ....+..+.|+|+  |+.|+..
T Consensus        50 ~gH~~~-------V~~v~~s~~~~g~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~  119 (297)
T 2pm7_B           50 TGHEGP-------VWRVDWAHPKFGTILASCSY---DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVA  119 (297)
T ss_dssp             CCCSSC-------EEEEEECCGGGCSEEEEEET---TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             ccccCC-------eEEEEecCCCcCCEEEEEcC---CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEE
Confidence            111011       124478764  887777654   3567788887764222   22 1556889999998  8888877


Q ss_pred             EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC-------------CCeEEEEeCCC
Q 039497          391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD-------------GKFLVFRSGRS  457 (642)
Q Consensus       391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD-------------g~~l~~~~~~~  457 (642)
                      +.       ++.+++|++..        ++..   ....+..+. ..+..+.|+|+             ++.|+..+.+ 
T Consensus       120 s~-------d~~v~~wd~~~--------~~~~---~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D-  179 (297)
T 2pm7_B          120 SS-------DGKVSVVEFKE--------NGTT---SPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-  179 (297)
T ss_dssp             ET-------TSEEEEEEBCS--------SSCB---CCEEEECCS-SCEEEEEECCCC------------CCEEEEEETT-
T ss_pred             EC-------CCcEEEEEecC--------CCce---eeeeeeccc-CccceEeecCCcccccccCCCCCCcceEEEEcCC-
Confidence            64       78999999865        1110   123344444 56778899997             4677666532 


Q ss_pred             CceeEEEEECCCCccc-cceeeCCCCCCcccceeEecCC---CEEEEEecCCCCCCCCceeEEEEeCCCCc--e-EEeee
Q 039497          458 GHKNLFVLDAVNGEFN-GDIRQLTDGPWIDTMPSWSPKG---DLIAFSSNRHNPDNVEAFSLYVIKPDGSG--L-RRIHV  530 (642)
Q Consensus       458 g~~~l~~~d~~~g~~~-~~~~~l~~~~~~~~~~~~spdG---~~l~~~~~~~~~~~~~~~~l~~~d~~~~~--~-~~l~~  530 (642)
                        ..|.+||+.+++.. .....+..+...+..++|+|++   ++|+..+.++.        |.+||++...  . ..+..
T Consensus       180 --~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~--------v~iWd~~~~~~~~~~~~~~  249 (297)
T 2pm7_B          180 --NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT--------CIIWTQDNEQGPWKKTLLK  249 (297)
T ss_dssp             --SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC--------EEEEEESSTTSCCEEEESS
T ss_pred             --CcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc--------EEEEEeCCCCCccceeeee
Confidence              36778887765510 0134566666778899999995   67777776654        8889887643  1 12221


Q ss_pred             -cCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          531 -AGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       531 -~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                       ..+..       .+..++|+|||+.|+..+.++
T Consensus       250 ~~~~~~-------~v~~~~~s~~g~~las~~~D~  276 (297)
T 2pm7_B          250 EEKFPD-------VLWRASWSLSGNVLALSGGDN  276 (297)
T ss_dssp             SSCCSS-------CEEEEEECSSSCCEEEEETTS
T ss_pred             cccCCC-------cEEEEEECCCCCEEEEEcCCC
Confidence             22333       567899999999998887765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.59  E-value=3.8e-13  Score=137.09  Aligned_cols=275  Identities=10%  Similarity=0.002  Sum_probs=173.4

Q ss_pred             ecccCCCccCCceeCCC---CcEEEEEecCCCCCCCCCCCCeeeEEEEEecC-CCce-eEeecCC---CcceEeeCCeEE
Q 039497          134 RLTPYGVVDYSPSVSYS---GKFIAVASYESRPWPGEFHELNTDIVVFQESD-PNKR-VIVCERG---GWPTWSGDSTIY  205 (642)
Q Consensus       134 ~lt~~~~~~~~~~~SPD---G~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~-~l~~~~~---~~~~wspdg~~~  205 (642)
                      .+..+.......+||||   |++||....++            .|.+|++.+ +... .....+.   ..+.|+|++.++
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg------------~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  101 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN------------DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV  101 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTS------------EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCC------------cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE
Confidence            34455556677899999   69999887665            799999987 4433 2222222   246999999888


Q ss_pred             EEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCcccccee--ecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497          206 FHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAA--FHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH  283 (642)
Q Consensus       206 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~  283 (642)
                      ++. ..+|  .|..+++.++        ....+..+...+..++|  +|+|++|+....++     .+.+||+...... 
T Consensus       102 ~s~-~~dg--~v~iwd~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~-  164 (368)
T 3mmy_A          102 FTA-SCDK--TAKMWDLSSN--------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDK-----TLKFWDTRSSNPM-  164 (368)
T ss_dssp             EEE-ETTS--EEEEEETTTT--------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTS-----EEEEECSSCSSCS-
T ss_pred             EEE-cCCC--cEEEEEcCCC--------CceeeccccCceEEEEEEeCCCCCEEEEccCCC-----cEEEEECCCCcEE-
Confidence            877 4567  5555666776        44555556667778888  89999888865544     7899987322100 


Q ss_pred             ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497          284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG  363 (642)
Q Consensus       284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~  363 (642)
                                                    .....            ......+.+.+..++....   ...+.++++..
T Consensus       165 ------------------------------~~~~~------------~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~  199 (368)
T 3mmy_A          165 ------------------------------MVLQL------------PERCYCADVIYPMAVVATA---ERGLIVYQLEN  199 (368)
T ss_dssp             ------------------------------EEEEC------------SSCEEEEEEETTEEEEEEG---GGCEEEEECSS
T ss_pred             ------------------------------EEEec------------CCCceEEEecCCeeEEEeC---CCcEEEEEecc
Confidence                                          00000            0001122222334444332   35677777766


Q ss_pred             CCeeEEee----cCCceeeeeecCCCE----EEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC
Q 039497          364 SKRWTLIK----DRTAFYNSWSPTEKH----VIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET  435 (642)
Q Consensus       364 ~~~~~l~~----~~~~~~~~~spdg~~----l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  435 (642)
                      ........    ........+.++...    ++..+       .++.+.+|++..        ...  ......+..+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~dg~i~i~~~~~--------~~~--~~~~~~~~~~~~  262 (368)
T 3mmy_A          200 QPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-------IEGRVAIHYINP--------PNP--AKDNFTFKCHRS  262 (368)
T ss_dssp             SCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-------TTSEEEEEESSC--------SCH--HHHSEEEECSEE
T ss_pred             ccchhhhccccccCCCceEEEcccCCCCCCeEEEec-------CCCcEEEEecCC--------CCc--cccceeeeeeec
Confidence            54332222    233444555555443    66555       378899998865        110  002233332220


Q ss_pred             -----------CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497          436 -----------GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR  504 (642)
Q Consensus       436 -----------~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~  504 (642)
                                 ..+..+.|+|||++|+..+.+   ..|.+||+.+++.   +..+..+...+..++|+|||++|+..+.+
T Consensus       263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d---g~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD---GRFSFWDKDARTK---LKTSEQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             C----CCCEEECCEEEEEECTTTCCEEEEETT---SCEEEEETTTTEE---EEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             ccccccccccccceEEEEEecCCCEEEEEccC---CeEEEEECCCCcE---EEEecCCCCCceEEEECCCCCeEEEEecc
Confidence                       147788999999999887743   4799999999886   67777777788899999999999999876


Q ss_pred             C
Q 039497          505 H  505 (642)
Q Consensus       505 ~  505 (642)
                      +
T Consensus       337 ~  337 (368)
T 3mmy_A          337 D  337 (368)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.59  E-value=1.5e-13  Score=140.17  Aligned_cols=224  Identities=14%  Similarity=0.100  Sum_probs=155.5

Q ss_pred             ccEEcCC----CCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEE
Q 039497          334 FPSFSPD----GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       334 ~~~~spd----g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      ...|+|+    |+.|+....   ...|.++++.+++......  ...+..+.|+| +++.|+..+.       ++.+++|
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-------dg~i~iw  143 (366)
T 3k26_A           74 TCAWTYDSNTSHPLLAVAGS---RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-------DHALRLW  143 (366)
T ss_dssp             EEEEEECTTTCCEEEEEEET---TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-------TSCEEEE
T ss_pred             EEEeccCCCCCCCEEEEecC---CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-------CCeEEEE
Confidence            4588998    556666543   3688899998877554443  66788999999 8888887764       7889999


Q ss_pred             EEEeecCCCCCCCCCccccceEEc---cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKIL---TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT---  480 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~---  480 (642)
                      ++..        +.     ....+   ..+. ..+..+.|+|+|++|+..+..   ..|.+||+.+++.   ...+.   
T Consensus       144 d~~~--------~~-----~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~---~~~~~~~~  203 (366)
T 3k26_A          144 NIQT--------DT-----LVAIFGGVEGHR-DEVLSADYDLLGEKIMSCGMD---HSLKLWRINSKRM---MNAIKESY  203 (366)
T ss_dssp             ETTT--------TE-----EEEEECSTTSCS-SCEEEEEECTTSSEEEEEETT---SCEEEEESCSHHH---HHHHHHHH
T ss_pred             Eeec--------Ce-----EEEEeccccccc-CceeEEEECCCCCEEEEecCC---CCEEEEECCCCcc---ccccceeE
Confidence            9854        11     33333   3344 678889999999999887743   3799999987654   22111   


Q ss_pred             -------------------------CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce----------
Q 039497          481 -------------------------DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL----------  525 (642)
Q Consensus       481 -------------------------~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~----------  525 (642)
                                               .+...+..+.|+  +++|+..+.++.        |.+||+.....          
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~--------i~~wd~~~~~~~~~~~~~~~~  273 (366)
T 3k26_A          204 DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENA--------IVCWKPGKMEDDIDKIKPSES  273 (366)
T ss_dssp             TCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSE--------EEEEEESSTTCCGGGCCTTCC
T ss_pred             EecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCE--------EEEEeCCCccccccccccCCc
Confidence                                     144566778888  777777766553        89999876543          


Q ss_pred             --EEeee-cCCCCCCCcccccccceEEcCC--CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-----eec
Q 039497          526 --RRIHV-AGPEGSGDVDRERINHVCFSAD--GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-----RRL  595 (642)
Q Consensus       526 --~~l~~-~~~~~~~~~~~~~~~~~~~S~D--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~l  595 (642)
                        ..+.. ..+..       .+..+.|+||  |++|+..+.++                 .|.+|++..+++     ..+
T Consensus       274 ~~~~~~~~~~~~~-------~v~~~~~s~~~~~~~l~~~~~dg-----------------~i~vwd~~~~~~~~~~~~~~  329 (366)
T 3k26_A          274 NVTILGRFDYSQC-------DIWYMRFSMDFWQKMLALGNQVG-----------------KLYVWDLEVEDPHKAKCTTL  329 (366)
T ss_dssp             CEEEEEEEECSSC-------CSSCCCCEECTTSSEEEEECTTS-----------------CEEEEECCSSSGGGCEEEEE
T ss_pred             chheeccccccCC-------cEEEEEEcCCCCCcEEEEEecCC-----------------cEEEEECCCCCCccccceEE
Confidence              11211 12222       4678899999  99888776554                 788899887642     245


Q ss_pred             cCC--CCCCCCcEEecCCceEEeecCCC
Q 039497          596 TWN--GYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       596 t~~--~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      ..+  ...+..++|+|+++++++....+
T Consensus       330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg  357 (366)
T 3k26_A          330 THHKCGAAIRQTSFSRDSSILIAVCDDA  357 (366)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccCCceEEEEeCCCCCeEEEEeCCC
Confidence            554  46678899999999998765544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.57  E-value=6e-13  Score=136.31  Aligned_cols=244  Identities=12%  Similarity=0.113  Sum_probs=159.1

Q ss_pred             eeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe
Q 039497          237 RVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE  316 (642)
Q Consensus       237 ~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~  316 (642)
                      .+..+...+..++|+|||++|+....++     .|.+||+....            ++.                   ..
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~------------~~~-------------------~~   49 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGET------------HKL-------------------ID   49 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTS-----CEEEEEEETTE------------EEE-------------------EE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCC-----cEEEEecCCCc------------cee-------------------ee
Confidence            3445555688889999999988865443     78888873110            000                   00


Q ss_pred             eccCCCceeEEeeeCCCccEEcCC--CCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecC--CCEEE
Q 039497          317 PVASPVKELRMLRLNGSFPSFSPD--GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPT--EKHVI  388 (642)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spd--g~~l~  388 (642)
                      .+.....       ....+.|+++  ++.|+....   ...|.++++.+++...+..    ...+..+.|+|+  ++.|+
T Consensus        50 ~~~~h~~-------~v~~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  119 (379)
T 3jrp_A           50 TLTGHEG-------PVWRVDWAHPKFGTILASCSY---DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL  119 (379)
T ss_dssp             EECCCSS-------CEEEEEECCGGGCSEEEEEET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             EecCCCC-------cEEEEEeCCCCCCCEEEEecc---CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEE
Confidence            0000001       1124578877  888877654   2567777887775323222    567889999999  89888


Q ss_pred             EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC-------------CCCeEEEEeC
Q 039497          389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP-------------DGKFLVFRSG  455 (642)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-------------Dg~~l~~~~~  455 (642)
                      ....       ++.+.+|++..        ....   ....+..+. ..+..+.|+|             |++.|+..+.
T Consensus       120 ~~~~-------d~~i~v~d~~~--------~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  180 (379)
T 3jrp_A          120 VASS-------DGKVSVVEFKE--------NGTT---SPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGA  180 (379)
T ss_dssp             EEET-------TSEEEEEECCT--------TSCC---CEEEEECCT-TCEEEEEECCCC----------CTTCEEEEEET
T ss_pred             EecC-------CCcEEEEecCC--------CCce---eeEEecCCC-CceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence            8874       78999999865        2111   233344444 6778899999             6888887774


Q ss_pred             CCCceeEEEEECCCCccc-cceeeCCCCCCcccceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCCCc---eEEe
Q 039497          456 RSGHKNLFVLDAVNGEFN-GDIRQLTDGPWIDTMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDGSG---LRRI  528 (642)
Q Consensus       456 ~~g~~~l~~~d~~~g~~~-~~~~~l~~~~~~~~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l  528 (642)
                      +   ..|++||+.+++.. .....+..+...+..++|+|+   +++|+..+.++.        |.+||+..+.   ...+
T Consensus       181 d---g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~--------i~iwd~~~~~~~~~~~~  249 (379)
T 3jrp_A          181 D---NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT--------CIIWTQDNEQGPWKKTL  249 (379)
T ss_dssp             T---SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC--------EEEEEESSTTSCCEEEE
T ss_pred             C---CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE--------EEEEeCCCCCccceeee
Confidence            3   37888888766530 012345556667888999999   888888877664        8999998764   2222


Q ss_pred             e-ecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          529 H-VAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       529 ~-~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      . ......       .+..+.|+|||++|+..+.++
T Consensus       250 ~~~~~~~~-------~v~~~~~s~~g~~l~~~~~dg  278 (379)
T 3jrp_A          250 LKEEKFPD-------VLWRASWSLSGNVLALSGGDN  278 (379)
T ss_dssp             SSSSCCSS-------CEEEEEECSSSCCEEEEESSS
T ss_pred             eccccCCC-------cEEEEEEcCCCCEEEEecCCC
Confidence            2 212333       567899999999998887765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.57  E-value=4e-12  Score=134.38  Aligned_cols=298  Identities=11%  Similarity=0.044  Sum_probs=189.1

Q ss_pred             eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497          197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL  276 (642)
Q Consensus       197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~  276 (642)
                      .+..++.++++. ..+|...+  ++..++.       ....+..+...+..++|+|++ .|+....++     .+.+||+
T Consensus       127 ~~~~~~~~l~sg-s~dg~i~v--wd~~~~~-------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg-----~i~vwd~  190 (464)
T 3v7d_B          127 CLQFEDNYVITG-ADDKMIRV--YDSINKK-------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDR-----TVRVWDI  190 (464)
T ss_dssp             EEEEETTEEEEE-ETTSCEEE--EETTTTE-------EEEEECCCSSCEEEEEECSTT-EEEEEETTS-----CEEEEET
T ss_pred             EEEECCCEEEEE-cCCCcEEE--EECCCCc-------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCC-----CEEEEEC
Confidence            455566777776 56775444  5666663       445666677778889999998 566654443     7899987


Q ss_pred             ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEc--CCCCEEEEEecCCCce
Q 039497          277 TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFS--PDGGLIVFNHDFELNA  354 (642)
Q Consensus       277 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~~  354 (642)
                      ...              +.+...                   ......+       ....|+  ++++.|+..+.   ..
T Consensus       191 ~~~--------------~~~~~~-------------------~~h~~~v-------~~l~~~~~~~~~~l~s~s~---d~  227 (464)
T 3v7d_B          191 KKG--------------CCTHVF-------------------EGHNSTV-------RCLDIVEYKNIKYIVTGSR---DN  227 (464)
T ss_dssp             TTT--------------EEEEEE-------------------CCCSSCE-------EEEEEEESSSCEEEEEEET---TS
T ss_pred             CCC--------------cEEEEE-------------------CCCCCcc-------EEEEEecCCCCCEEEEEcC---CC
Confidence            321              111110                   0000011       112333  56666666543   24


Q ss_pred             eEEEEECCCCCeeE-----------------------EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          355 GIKIAKSDGSKRWT-----------------------LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       355 ~l~~~d~~~~~~~~-----------------------l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .|.++++..+....                       ...........++++++.|+..+.       ++.+++|++.. 
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-------d~~i~vwd~~~-  299 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY-------DNTLIVWDVAQ-  299 (464)
T ss_dssp             CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET-------TSCEEEEETTT-
T ss_pred             cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC-------CCeEEEEECCC-
Confidence            56666766554221                       111222233456889999888874       67899998854 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                             +.     ....+..+. ..+..+.|+|||++|+..+.+   ..|.+||+.+++.   +..+..+...+..+.|
T Consensus       300 -------~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~---~~~~~~h~~~v~~~~~  360 (464)
T 3v7d_B          300 -------MK-----CLYILSGHT-DRIYSTIYDHERKRCISASMD---TTIRIWDLENGEL---MYTLQGHTALVGLLRL  360 (464)
T ss_dssp             -------TE-----EEEEECCCS-SCEEEEEEETTTTEEEEEETT---SCEEEEETTTTEE---EEEECCCSSCEEEEEE
T ss_pred             -------Cc-----EEEEecCCC-CCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcE---EEEEeCCCCcEEEEEE
Confidence                   22     445555554 678889999999999877743   4799999998886   6677767667777777


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      +  +++|+..+.++.        |.+||+.++.........  .       ......|+++++.|+..+ ++        
T Consensus       361 ~--~~~l~s~s~dg~--------v~vwd~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~l~~~~-dg--------  412 (464)
T 3v7d_B          361 S--DKFLVSAAADGS--------IRGWDANDYSRKFSYHHT--N-------LSAITTFYVSDNILVSGS-EN--------  412 (464)
T ss_dssp             C--SSEEEEEETTSE--------EEEEETTTCCEEEEEECT--T-------CCCEEEEEECSSEEEEEE-TT--------
T ss_pred             c--CCEEEEEeCCCc--------EEEEECCCCceeeeecCC--C-------CccEEEEEeCCCEEEEec-CC--------
Confidence            6  678888877654        999999876654433222  2       346789999999887766 32        


Q ss_pred             CCCCCCCCCcEEEEEcCCCceee--ccCCCCCCCCcEEecCCceEEeec
Q 039497          572 WPNQFQPYGDLYVVKLDGSGLRR--LTWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~~~~--lt~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                               .|.+|++..+++..  +..+...+..++|+ +..++++..
T Consensus       413 ---------~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~  451 (464)
T 3v7d_B          413 ---------QFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVE  451 (464)
T ss_dssp             ---------EEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEE
T ss_pred             ---------eEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEE
Confidence                     78999998887554  34455566788887 334444443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.57  E-value=4.4e-13  Score=140.64  Aligned_cols=257  Identities=10%  Similarity=0.034  Sum_probs=155.4

Q ss_pred             ceEee-CCeEEEEEecCCCceEEEEEecCC-CcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          196 PTWSG-DSTIYFHRQADDGWWSIFRVSFPE-NLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       196 ~~wsp-dg~~~~~~~~~~g~~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      ++|+| |+.++++. ..+|...||.+.... +..     ........+...+..++|+|++++|+....++     .+.+
T Consensus        69 ~~~s~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg-----~i~v  137 (437)
T 3gre_A           69 SAVSPGETPYLITG-SDQGVIKIWNLKEIIVGEV-----YSSSLTYDCSSTVTQITMIPNFDAFAVSSKDG-----QIIV  137 (437)
T ss_dssp             EEEECSSSCEEEEE-ETTSEEEEEEHHHHHTTCC-----CSCSEEEECSSCEEEEEECTTSSEEEEEETTS-----EEEE
T ss_pred             EEECCCCCCEEEEe-cCCceEEEeECcccccCcc-----cceeeeccCCCCEEEEEEeCCCCEEEEEeCCC-----EEEE
Confidence            69999 99888887 568867777654310 200     01111113455688899999999998866554     8999


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC--CCceeEEeeeCCCccEEcCCCCEEEEEecCC
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS--PVKELRMLRLNGSFPSFSPDGGLIVFNHDFE  351 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  351 (642)
                      ||+...           ..|+.+.+.....         ........  .......     ....++++++.|+....  
T Consensus       138 wd~~~~-----------~~~~~~~~~~~~~---------i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~--  190 (437)
T 3gre_A          138 LKVNHY-----------QQESEVKFLNCEC---------IRKINLKNFGKNEYAVR-----MRAFVNEEKSLLVALTN--  190 (437)
T ss_dssp             EEEEEE-----------EETTEEEEEEEEE---------EEEEEGGGGSSCCCEEE-----EEEEECSSCEEEEEEET--
T ss_pred             EEeccc-----------cCCceeeccccce---------eEEEEccCcccccCceE-----EEEEEcCCCCEEEEEeC--
Confidence            998321           1122222211100         00000000  0000000     01236889988877654  


Q ss_pred             CceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497          352 LNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV  427 (642)
Q Consensus       352 ~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  427 (642)
                       ...|.++|+..++......    ...+..+.|+|+++.|+..+.       ++.+++|++..        +.     ..
T Consensus       191 -d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-------dg~i~iwd~~~--------~~-----~~  249 (437)
T 3gre_A          191 -LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-------RGIIDIWDIRF--------NV-----LI  249 (437)
T ss_dssp             -TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-------TSCEEEEETTT--------TE-----EE
T ss_pred             -CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-------CCeEEEEEcCC--------cc-----EE
Confidence             3689999998877654443    367889999999999988874       68899999854        11     33


Q ss_pred             EEcc-ccCCCCccCc----EECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--------------------
Q 039497          428 KILT-KEETGNNAFP----SCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--------------------  482 (642)
Q Consensus       428 ~~l~-~~~~~~~~~~----~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--------------------  482 (642)
                      ..+. .+. ..+..+    .|+||+++|+..+   .+..|.+||+.+++.   +..+..+                    
T Consensus       250 ~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~  322 (437)
T 3gre_A          250 RSWSFGDH-APITHVEVCQFYGKNSVIVVGGS---SKTFLTIWNFVKGHC---QYAFINSDEQPSMEHFLPIEKGLEELN  322 (437)
T ss_dssp             EEEBCTTC-EEEEEEEECTTTCTTEEEEEEES---TTEEEEEEETTTTEE---EEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred             EEEecCCC-CceEEEEeccccCCCccEEEEEc---CCCcEEEEEcCCCcE---EEEEEcCCCCCccceecccccccccce
Confidence            3333 222 345555    5667787777665   334899999998875   3333321                    


Q ss_pred             ------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          483 ------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       483 ------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                            ...+..++|+ ++++|+..+.++.        |++||+.+++...
T Consensus       323 ~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~--------i~~wd~~~~~~~~  364 (437)
T 3gre_A          323 FCGIRSLNALSTISVS-NDKILLTDEATSS--------IVMFSLNELSSSK  364 (437)
T ss_dssp             CCCCCSGGGGCCEEEE-TTEEEEEEGGGTE--------EEEEETTCGGGCE
T ss_pred             ecccccCCceEEEEEC-CceEEEecCCCCe--------EEEEECCCcccce
Confidence                  2234566888 7777776665553        9999998776443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.3e-13  Score=147.14  Aligned_cols=297  Identities=11%  Similarity=0.061  Sum_probs=164.8

Q ss_pred             eeeEEEEEecCCCce-----eEeecCCC--cceEeeC------CeEEEEEecCCCceEEEEEecCCCcc--cccCCccce
Q 039497          172 NTDIVVFQESDPNKR-----VIVCERGG--WPTWSGD------STIYFHRQADDGWWSIFRVSFPENLE--FLGFPIAPT  236 (642)
Q Consensus       172 ~~~l~~~~~~~g~~~-----~l~~~~~~--~~~wspd------g~~~~~~~~~~g~~~l~~~~~~~~~~--~~~~~~~~~  236 (642)
                      ...|.+|++.+++..     .+....+.  .++|+|+      +.++++. ..+|...||.+.......  .........
T Consensus       182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~-s~DgtvrlWd~~~~~~~~~~~~~~~~p~~  260 (524)
T 2j04_B          182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFV-SQEGTINFLEIIDNATDVHVFKMCEKPSL  260 (524)
T ss_dssp             CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEE-ETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred             CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEE-ecCCeEEEEEcCCCccccccceeecCceE
Confidence            346888999887642     12222232  4699997      4677776 568877777664321100  000000112


Q ss_pred             eeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe
Q 039497          237 RVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE  316 (642)
Q Consensus       237 ~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~  316 (642)
                      .+..+...+..++|++++ .|+....++     .|.+||+.....                              .....
T Consensus       261 ~l~~h~~~v~sv~~s~~~-~lasgs~Dg-----tV~lWD~~~~~~------------------------------~~~~~  304 (524)
T 2j04_B          261 TLSLADSLITTFDFLSPT-TVVCGFKNG-----FVAEFDLTDPEV------------------------------PSFYD  304 (524)
T ss_dssp             EECCTTTCEEEEEESSSS-EEEEEETTS-----EEEEEETTBCSS------------------------------CSEEE
T ss_pred             EEEcCCCCEEEEEecCCC-eEEEEeCCC-----EEEEEECCCCCC------------------------------ceEEe
Confidence            345555567788888865 577644443     899999832110                              00000


Q ss_pred             eccCCCceeEEeeeCCCcc--EEcCCC-CEEEEEecCCCceeEEEEECCCCCeeE-Eee--c-CCceeeeeecCCCEEEE
Q 039497          317 PVASPVKELRMLRLNGSFP--SFSPDG-GLIVFNHDFELNAGIKIAKSDGSKRWT-LIK--D-RTAFYNSWSPTEKHVIY  389 (642)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~--~~spdg-~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~~--~-~~~~~~~~spdg~~l~~  389 (642)
                      .  .....+       ..+  .|+|+| +.|+..+.   ...|.++|+..++... +..  . ..+..++|+|+++.++.
T Consensus       305 ~--~H~~~V-------~sv~~~~s~~g~~~laS~S~---D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s  372 (524)
T 2j04_B          305 Q--VHDSYI-------LSVSTAYSDFEDTVVSTVAV---DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY  372 (524)
T ss_dssp             E--CSSSCE-------EEEEEECCTTSCCEEEEEET---TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEE
T ss_pred             e--cccccE-------EEEEEEcCCCCCeEEEEecc---CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEE
Confidence            0  000001       122  468888 66666554   3678888887654322 221  1 24678999999998776


Q ss_pred             EEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497          390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN  469 (642)
Q Consensus       390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~  469 (642)
                      .+       .+..+++|++..        +.     ....+..+. ..+..++|||||+.|+..+.+   ..|.+|++..
T Consensus       373 ~~-------~d~tv~lwd~~~--------~~-----~~~~l~gH~-~~V~sva~Sp~g~~l~Sgs~D---gtv~lwd~~~  428 (524)
T 2j04_B          373 SD-------GASSLRAVPSRA--------AF-----AVHPLVSRE-TTITAIGVSRLHPMVLAGSAD---GSLIITNAAR  428 (524)
T ss_dssp             EC-------SSSEEEEEETTC--------TT-----CCEEEEECS-SCEEEEECCSSCCBCEEEETT---TEEECCBSCS
T ss_pred             eC-------CCCcEEEEECcc--------cc-----cceeeecCC-CceEEEEeCCCCCeEEEEECC---CEEEEEechH
Confidence            54       366899998754        22     345566665 788899999999998877633   3788888864


Q ss_pred             CccccceeeCCCC-----CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccc
Q 039497          470 GEFNGDIRQLTDG-----PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI  544 (642)
Q Consensus       470 g~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~  544 (642)
                      +.    +..+...     ...+..++|||+|+.+.+.  +.       ..++.+...+.....+.  ++..       .+
T Consensus       429 ~~----~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~--~~-------~~~~~~~~~g~~~~~l~--gh~~-------~V  486 (524)
T 2j04_B          429 RL----LHGIKNSSATQKSLRLWKWDYSIKDDKYRID--SS-------YEVYPLTVNDVSKAKID--AHGI-------NI  486 (524)
T ss_dssp             ST----TTCC------CCCCEEEECBCCSSSCEEEEC--CC-------CCCCC---------------CCC-------SC
T ss_pred             hh----ccccccCccceeeeEEEEeccCCCCCeEEcc--CC-------ceecccccCCcceeeec--CCCc-------eE
Confidence            32    1222111     1124567899999955332  21       11333333333333332  3444       67


Q ss_pred             cceEEcCCCC---EEEEEEecC
Q 039497          545 NHVCFSADGE---WLLFTANLG  563 (642)
Q Consensus       545 ~~~~~S~Dg~---~l~~~~~~~  563 (642)
                      ..++|+||+.   +|+..+.++
T Consensus       487 ~~Vafsp~~~~~~~lAsg~~~g  508 (524)
T 2j04_B          487 TCTKWNETSAGGKCYAFSNSAG  508 (524)
T ss_dssp             CCEEECCSTTTTTEEEEECTTS
T ss_pred             EEEECCCCCCccHHHHhhccCc
Confidence            8899999964   776666544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.56  E-value=6.9e-13  Score=148.46  Aligned_cols=219  Identities=12%  Similarity=0.140  Sum_probs=144.6

Q ss_pred             ccEEc-CCCCEEEEEecCCCc--eeEEEEECCCC-CeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          334 FPSFS-PDGGLIVFNHDFELN--AGIKIAKSDGS-KRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       334 ~~~~s-pdg~~l~~~~~~~~~--~~l~~~d~~~~-~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      .+.|| |||++|+|.....+.  .+||++|++++ +............+.|||||+.|+|+....    .....+||..+
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~----~~~~~~v~~~~  253 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDE----TLRENKVWRHV  253 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECT----TCCEEEEEEEE
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECC----CCCCCEEEEEE
Confidence            57899 999999998765443  56999999998 622111122246789999999999998531    12235777777


Q ss_pred             eecCCCCCCCCCccccceEEccc-cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccce--eeCCCCCCcc
Q 039497          410 FQLDPSDDNNREEIPCDVKILTK-EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI--RQLTDGPWID  486 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~--~~l~~~~~~~  486 (642)
                      .  .     ++..   ....+.. ........+.|||||++|++.+......+||++|+++++.  ..  +.+....   
T Consensus       254 l--g-----t~~~---~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~--~~~~~~l~~~~---  318 (751)
T 2xe4_A          254 M--G-----KLQS---EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA--HNTLEIVRPRE---  318 (751)
T ss_dssp             T--T-----SCGG---GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT--CCCEEESSCCC---
T ss_pred             C--C-----CCch---hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC--CceeEEeecCC---
Confidence            6  2     1210   1123321 1112345689999999999998776778999999987631  14  5565432   


Q ss_pred             cceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCC-CceEE-eeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497          487 TMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRR-IHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       487 ~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~-l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                      ..+.|+++   |+.|+|.++...   ....+|+++++++ ++.+. +......         .....++++++.|++...
T Consensus       319 ~~~~~s~~~~~g~~l~~~t~~~~---a~~~~L~~~d~~~~~~~~~~li~~~~~---------~~l~~~~~~~~~lv~~~~  386 (751)
T 2xe4_A          319 KGVRYDVQMHGTSHLVILTNEGG---AVNHKLLIAPRGQPSDWSHVLVDHSED---------VFMESIAVRSNYLVVAGR  386 (751)
T ss_dssp             TTCCEEEEEETTTEEEEEECTTT---CTTCEEEEEETTSTTCCCCEEECCCSS---------EEEEEEEECSSEEEEEEE
T ss_pred             CCceEEEeeeeCCEEEEEeCCCC---CCCcEEEEEcCCCcccceeeEECCCCC---------cEEEEEEEECCEEEEEEE
Confidence            23456665   899999987641   1567899999986 45444 4432221         122346667889999988


Q ss_pred             cCCcccCCCCCCCCCCCCCcEEEEEc-------CCCc-eeeccC
Q 039497          562 LGAVMAEPVSWPNQFQPYGDLYVVKL-------DGSG-LRRLTW  597 (642)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~-~~~lt~  597 (642)
                      ..+..              .|+++++       ++++ .++|+.
T Consensus       387 ~~g~~--------------~l~~~dl~~~~~~~~~g~~~~~l~l  416 (751)
T 2xe4_A          387 RAGLT--------------RIWTMMADSQDGVFKAGTGLREVVM  416 (751)
T ss_dssp             ETTEE--------------EEEEEECCTTTSCCCTTTCCEECCC
T ss_pred             eCCEE--------------EEEEEecccccccccCCccceEECC
Confidence            77654              8999996       5666 777754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.56  E-value=3.8e-12  Score=126.95  Aligned_cols=266  Identities=12%  Similarity=0.071  Sum_probs=175.2

Q ss_pred             ceEEEEccCCceEecc---cCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-Ccc
Q 039497          121 ALYSTDLKASKFTRLT---PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-GWP  196 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt---~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~  196 (642)
                      .|.+.++.+++..++.   .+.......+|+|||++||..+.+.            .|.+|++.+++..+....+. ...
T Consensus        46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg------------~v~iw~~~~~~~~~~~~~h~~~~~  113 (318)
T 4ggc_A           46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------------EVQLWDVQQQKRLRNMTSHSARVG  113 (318)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------------EEEEEETTTTEEEEEEECCSSCEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC------------cEEEeecCCceeEEEecCccceEE
Confidence            4666699988766543   2333456789999999999988766            78999999987655544333 344


Q ss_pred             eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497          197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL  276 (642)
Q Consensus       197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~  276 (642)
                      .+++++.++++. ..++...++  +......      ....+..+...+....++++|++|+....++     .+.+||+
T Consensus       114 ~~~~~~~~l~s~-~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~  179 (318)
T 4ggc_A          114 SLSWNSYILSSG-SRSGHIHHH--DVRVAEH------HVATLSGHSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPS  179 (318)
T ss_dssp             EEEEETTEEEEE-ETTSEEEEE--ETTSSSC------EEEEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEES
T ss_pred             EeecCCCEEEEE-ecCCceEee--ecCCCce------eEEEEcCccCceEEEEEcCCCCEEEEEecCc-----ceeEEEC
Confidence            788888887776 445644444  4333311      3344555555667778899999888865544     7889987


Q ss_pred             ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeE
Q 039497          277 TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGI  356 (642)
Q Consensus       277 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l  356 (642)
                      ........                           .  .........       ......++|++..++..........|
T Consensus       180 ~~~~~~~~---------------------------~--~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~~i  223 (318)
T 4ggc_A          180 APGEGGWV---------------------------P--LQTFTQHQG-------AVKAVAWCPWQSNVLATGGGTSDRHI  223 (318)
T ss_dssp             SCBTTBSC---------------------------C--SEEECCCCS-------CEEEEEECTTSTTEEEEEECTTTCEE
T ss_pred             CCCccccc---------------------------c--eeeecccCC-------ceEEEEecCCCCcEEEEEecCCCCEE
Confidence            33211000                           0  000000000       01234678877766665444556778


Q ss_pred             EEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCC
Q 039497          357 KIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEET  435 (642)
Q Consensus       357 ~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  435 (642)
                      .+++........... ...+....|+|+++.++..+.     ..++.+++|++..        +.     ....+..+. 
T Consensus       224 ~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg-----~~d~~i~iwd~~~--------~~-----~~~~l~gH~-  284 (318)
T 4ggc_A          224 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG-----FAQNQLVIWKYPT--------MA-----KVAELKGHT-  284 (318)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEEC-----TTTCCEEEEETTT--------CC-----EEEEECCCS-
T ss_pred             EEEecccccccccccceeeeeeeeecccccceEEEEE-----cCCCEEEEEECCC--------Cc-----EEEEEcCCC-
Confidence            888988777555444 566788999999999988763     2467899998854        23     566676666 


Q ss_pred             CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG  470 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g  470 (642)
                      ..+..++|||||++|+..+.+   ..|.+||+...
T Consensus       285 ~~V~~l~~spdg~~l~S~s~D---~~v~iWd~~~~  316 (318)
T 4ggc_A          285 SRVLSLTMSPDGATVASAAAD---ETLRLWRCFEL  316 (318)
T ss_dssp             SCEEEEEECTTSSCEEEEETT---TEEEEECCSCC
T ss_pred             CCEEEEEEcCCCCEEEEEecC---CeEEEEECCCC
Confidence            788899999999999877743   37888887643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.1e-12  Score=134.45  Aligned_cols=228  Identities=11%  Similarity=0.077  Sum_probs=155.3

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .++|+|||++|+.... +  ..|.++++.......+..    ...+..+.|+|+  ++.|+..+.       ++.+++|+
T Consensus        16 ~~~~s~~~~~l~~~~~-d--g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-------dg~v~iwd   85 (379)
T 3jrp_A           16 DAVLDYYGKRLATCSS-D--KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-------DGKVLIWK   85 (379)
T ss_dssp             EEEECSSSSEEEEEET-T--SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-------TSCEEEEE
T ss_pred             EEEEcCCCCEEEEEEC-C--CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc-------CCEEEEEE
Confidence            5689999999888654 2  456666765443333222    556889999987  888888774       68999999


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI  485 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~  485 (642)
                      +..        +...   ....+..+. ..+..+.|+|+  ++.|+..+.   ...|.+||+.++.. .....+..+...
T Consensus        86 ~~~--------~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~-~~~~~~~~~~~~  149 (379)
T 3jrp_A           86 EEN--------GRWS---QIAVHAVHS-ASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGT-TSPIIIDAHAIG  149 (379)
T ss_dssp             EET--------TEEE---EEEEECCCS-SCEEEEEECCGGGCSEEEEEET---TSEEEEEECCTTSC-CCEEEEECCTTC
T ss_pred             cCC--------Ccee---EeeeecCCC-cceEEEEeCCCCCCCEEEEecC---CCcEEEEecCCCCc-eeeEEecCCCCc
Confidence            976        1100   223333344 67888999999  888888774   34799999987642 112344556667


Q ss_pred             ccceeEec-------------CCCEEEEEecCCCCCCCCceeEEEEeCCCCceE--Ee-eecCCCCCCCcccccccceEE
Q 039497          486 DTMPSWSP-------------KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR--RI-HVAGPEGSGDVDRERINHVCF  549 (642)
Q Consensus       486 ~~~~~~sp-------------dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l-~~~~~~~~~~~~~~~~~~~~~  549 (642)
                      +..+.|+|             |+++|+..+.++.        |++||+.++...  .+ ....+..       .+..+.|
T Consensus       150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--------i~i~d~~~~~~~~~~~~~~~~h~~-------~v~~~~~  214 (379)
T 3jrp_A          150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNL--------VKIWKYNSDAQTYVLESTLEGHSD-------WVRDVAW  214 (379)
T ss_dssp             EEEEEECCCC----------CTTCEEEEEETTSC--------EEEEEEETTTTEEEEEEEECCCSS-------CEEEEEE
T ss_pred             eEEEEEcCccccccccccCCCCCCEEEEEeCCCe--------EEEEEecCCCcceeeEEEEecccC-------cEeEEEE
Confidence            78899999             7999988887764        999998765432  22 1223333       5788999


Q ss_pred             cCC---CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc----eeeccC--CCCCCCCcEEecCCceEEeecC
Q 039497          550 SAD---GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG----LRRLTW--NGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       550 S~D---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~lt~--~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      +||   ++.|+..+.++                 .|.+|++..+.    ...+..  +...+..++|+|||+++++...
T Consensus       215 sp~~~~~~~l~s~~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  276 (379)
T 3jrp_A          215 SPTVLLRSYLASVSQDR-----------------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  276 (379)
T ss_dssp             CCCCSSSEEEEEEETTS-----------------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred             CCCCCCCCeEEEEeCCC-----------------EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence            999   77777766554                 67777877653    222322  4455678899999998876544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.55  E-value=1.4e-12  Score=129.13  Aligned_cols=230  Identities=12%  Similarity=0.068  Sum_probs=150.9

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCC--e-eEEee-cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--R-WTLIK-DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~-~~l~~-~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      ..+|+|||++|+..+.   ...|.++++++..  . ..+.. ...+..+.|+|+  |+.|+..+.       ++.+++|+
T Consensus        14 ~~~~s~~g~~las~s~---D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~-------D~~v~iWd   83 (297)
T 2pm7_B           14 DAVMDYYGKRMATCSS---DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-------DGKVMIWK   83 (297)
T ss_dssp             EEEECTTSSEEEEEET---TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-------TTEEEEEE
T ss_pred             EEEECCCCCEEEEEeC---CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC-------CCEEEEEE
Confidence            4589999999888764   3567777776432  2 22322 567889999864  888887764       78999999


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI  485 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~  485 (642)
                      +..        +...   ....+..+. ..+..+.|+|+  |+.|+..+.   +..|.+||+.++.. .....+..+...
T Consensus        84 ~~~--------~~~~---~~~~~~~h~-~~v~~v~~~p~~~g~~l~s~s~---d~~v~~wd~~~~~~-~~~~~~~~h~~~  147 (297)
T 2pm7_B           84 EEN--------GRWS---QIAVHAVHS-ASVNSVQWAPHEYGPMLLVASS---DGKVSVVEFKENGT-TSPIIIDAHAIG  147 (297)
T ss_dssp             BSS--------SCBC---CCEEECCCS-SCEEEEEECCGGGCSEEEEEET---TSEEEEEEBCSSSC-BCCEEEECCSSC
T ss_pred             cCC--------CceE---EEEEeecCC-CceeEEEeCcCCCCcEEEEEEC---CCcEEEEEecCCCc-eeeeeeecccCc
Confidence            865        2111   233344444 66788999998  888887764   34788899876532 002334455566


Q ss_pred             ccceeEecC-------------CCEEEEEecCCCCCCCCceeEEEEeCCCCceE--Ee-eecCCCCCCCcccccccceEE
Q 039497          486 DTMPSWSPK-------------GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR--RI-HVAGPEGSGDVDRERINHVCF  549 (642)
Q Consensus       486 ~~~~~~spd-------------G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l-~~~~~~~~~~~~~~~~~~~~~  549 (642)
                      +..+.|+|+             +++|+..+.++.        |.+||+..++..  .+ +..++..       .+..++|
T Consensus       148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~--------v~lwd~~~~~~~~~~~~~l~~H~~-------~V~~v~~  212 (297)
T 2pm7_B          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNL--------VKIWKYNSDAQTYVLESTLEGHSD-------WVRDVAW  212 (297)
T ss_dssp             EEEEEECCCC------------CCEEEEEETTSC--------EEEEEEETTTTEEEEEEEECCCSS-------CEEEEEE
T ss_pred             cceEeecCCcccccccCCCCCCcceEEEEcCCCc--------EEEEEEcCCCceEEEEEEecCCCC-------ceEEEEE
Confidence            778899997             567887777664        889998765421  11 2224444       6789999


Q ss_pred             cCCC---CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc----eeec--cCCCCCCCCcEEecCCceEEeecCC
Q 039497          550 SADG---EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG----LRRL--TWNGYENGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       550 S~Dg---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~l--t~~~~~~~~~~~s~dg~~~~~~~~~  620 (642)
                      +|++   ++|+..+.++                 .|.+|+++...    ...+  ..+...+..++|+|+|++|++....
T Consensus       213 sp~~~~~~~las~s~D~-----------------~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          213 SPTVLLRSYMASVSQDR-----------------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             CCCCSSSEEEEEEETTS-----------------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred             CCCCCCceEEEEEECCC-----------------cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence            9996   6666666554                 56666765532    2233  2234456788999999999876554


Q ss_pred             C
Q 039497          621 E  621 (642)
Q Consensus       621 ~  621 (642)
                      +
T Consensus       276 ~  276 (297)
T 2pm7_B          276 N  276 (297)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.54  E-value=3.5e-12  Score=131.98  Aligned_cols=299  Identities=11%  Similarity=0.052  Sum_probs=184.5

Q ss_pred             ceeeCCCCCccccceeec-CCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccc
Q 039497          235 PTRVTPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIP  313 (642)
Q Consensus       235 ~~~l~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~  313 (642)
                      ...+..+...+..++|+| +|++|+....++     .+.+||+.........           ...              
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~-----------~~~--------------   85 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDG-----VIVLYDLENSSRQSYY-----------TCK--------------   85 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTS-----CEEEEECCCCSSSSCE-----------EEC--------------
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCC-----eEEEEECCCCcccceE-----------ecc--------------
Confidence            344556677889999999 999998865544     8999998543311110           000              


Q ss_pred             eEeeccCCCceeEEeeeCCCccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCC---CEEE
Q 039497          314 HLEPVASPVKELRMLRLNGSFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTE---KHVI  388 (642)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg---~~l~  388 (642)
                      ........  ...........+.|+| +++.|+....   ...|.++++.+++...... ...+..+.|+|.+   ..++
T Consensus        86 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (408)
T 4a11_B           86 AVCSIGRD--HPDVHRYSVETVQWYPHDTGMFTSSSF---DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA  160 (408)
T ss_dssp             EEEEECTT--CTTCCSSCEEEEEECTTCTTCEEEEET---TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEE
T ss_pred             cccccccc--ccccCCCcEEEEEEccCCCcEEEEEeC---CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEE
Confidence            00000000  0000001113558999 6666666543   3678899998887655544 5667788888854   4677


Q ss_pred             EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497          389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV  468 (642)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~  468 (642)
                      ....       ++.+.+|++..        +.     ....+..+. ..+..+.|+|++++++++...++  .|.+||+.
T Consensus       161 ~~~~-------~~~v~~~d~~~--------~~-----~~~~~~~~~-~~v~~~~~~~~~~~ll~~~~~dg--~i~i~d~~  217 (408)
T 4a11_B          161 VGTR-------GPKVQLCDLKS--------GS-----CSHILQGHR-QEILAVSWSPRYDYILATASADS--RVKLWDVR  217 (408)
T ss_dssp             EEES-------SSSEEEEESSS--------SC-----CCEEECCCC-SCEEEEEECSSCTTEEEEEETTS--CEEEEETT
T ss_pred             EEcC-------CCeEEEEeCCC--------cc-----eeeeecCCC-CcEEEEEECCCCCcEEEEEcCCC--cEEEEECC
Confidence            6653       67899999865        22     455555555 67888999999997555554333  78899987


Q ss_pred             CCccccceeeC---------------CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497          469 NGEFNGDIRQL---------------TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP  533 (642)
Q Consensus       469 ~g~~~~~~~~l---------------~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  533 (642)
                      +++.  ....+               ..+...+..+.|+|+|++|+..+.++.        |.+||+.+++.........
T Consensus       218 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------i~vwd~~~~~~~~~~~~~~  287 (408)
T 4a11_B          218 RASG--CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR--------MRLWNSSNGENTLVNYGKV  287 (408)
T ss_dssp             CSSC--CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC--------EEEEETTTCCBCCCCCCCC
T ss_pred             CCCc--ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe--------EEEEECCCCccceeccccc
Confidence            6641  02222               234455677899999999998887764        9999998876543221110


Q ss_pred             CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCc
Q 039497          534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQ  612 (642)
Q Consensus       534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~  612 (642)
                      ..   ..............+..+++...++                 .|.+|++..++ +..+..+...+..++|+||++
T Consensus       288 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  347 (408)
T 4a11_B          288 CN---NSKKGLKFTVSCGCSSEFVFVPYGS-----------------TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ  347 (408)
T ss_dssp             CC---CCSSCCCCEECCSSSSCEEEEEETT-----------------EEEEEETTTCCEEEEECCCSSCEEEEEEETTTT
T ss_pred             cc---cccccceeEEecCCCceEEEEecCC-----------------EEEEEECcCCcceeeeccCCCeEEEEEEcCCCC
Confidence            00   0000111122223344555555543                 78999987766 455666667778999999999


Q ss_pred             eEEeecCCC
Q 039497          613 LDLGKLRLE  621 (642)
Q Consensus       613 ~~~~~~~~~  621 (642)
                      +|++....|
T Consensus       348 ~l~s~~~dg  356 (408)
T 4a11_B          348 ELYSGSRDC  356 (408)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEECCCC
Confidence            998765443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.54  E-value=4.8e-12  Score=128.85  Aligned_cols=317  Identities=11%  Similarity=0.028  Sum_probs=172.4

Q ss_pred             eCCeEEEEEecCCC---ceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEec-----cCCceeeE
Q 039497          200 GDSTIYFHRQADDG---WWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRR-----KNRNFRHI  271 (642)
Q Consensus       200 pdg~~~~~~~~~~g---~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~-----~~~~~~~i  271 (642)
                      +|++.+|+.+....   ...|+.+|..+++       ....+.. +... .+++||||++|+++...     .+.....+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~-------~~~~i~~-g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v   83 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGK-------FLGMVPT-AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVV   83 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCC-------EEEEEEC-CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCe-------EEEEecC-CCCC-ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence            46665665532111   1278888988773       2233333 3233 78999999999887542     12234467


Q ss_pred             EEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCC
Q 039497          272 EIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE  351 (642)
Q Consensus       272 ~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  351 (642)
                      .+||+...              +.+.-.                ......   . ........+.+||||++|+.... .
T Consensus        84 ~v~d~~t~--------------~~~~~i----------------~~~~~~---~-~~g~~p~~i~~spdg~~l~v~n~-~  128 (361)
T 2oiz_A           84 EVWDADKL--------------TFEKEI----------------SLPPKR---V-QGLNYDGLFRQTTDGKFIVLQNA-S  128 (361)
T ss_dssp             EEEETTTC--------------CEEEEE----------------EECTTB---C-CBCCCGGGEEECTTSSEEEEEEE-S
T ss_pred             EEEECcCC--------------cEEEEE----------------EcCccc---c-ccCCCcceEEECCCCCEEEEECC-C
Confidence            77775211              111110                000000   0 00011235689999998877543 2


Q ss_pred             CceeEEEEECCCCCeeEE-eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE-E
Q 039497          352 LNAGIKIAKSDGSKRWTL-IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK-I  429 (642)
Q Consensus       352 ~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~  429 (642)
                      ....|.++|+++++.... ........+.+.|+++..++...      .++.+.++.++.  +      +     +.. .
T Consensus       129 ~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~------~dg~~~~v~~~~--~------g-----~~~~~  189 (361)
T 2oiz_A          129 PATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC------GDGGLLTINLGE--D------G-----KVASQ  189 (361)
T ss_dssp             SSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE------TTSSEEEEEECT--T------S-----SEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC------CCCcEEEEEECC--C------C-----cEeee
Confidence            247899999998765443 32222222445666543333331      244555555433  1      2     111 0


Q ss_pred             -----ccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee--CCC--------CCCcccceeEecC
Q 039497          430 -----LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ--LTD--------GPWIDTMPSWSPK  494 (642)
Q Consensus       430 -----l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~--l~~--------~~~~~~~~~~spd  494 (642)
                           +.... .......++|||+.+++.+..   ..++.+|+.+++. .....  +..        .+.....++++||
T Consensus       190 ~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~---~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          190 SRSKQMFSVK-DDPIFIAPALDKDKAHFVSYY---GNVYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             EECCCCSCTT-TSCBCSCCEECSSEEEEEBTT---SEEEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             ccccceEcCC-CCceEEEecccCCEEEEEeCC---CeEEEEEecCCCc-eecccccccCccccccccccCCeeEEEEecC
Confidence                 11111 122234568899888888742   3799999875542 00011  111        0111223689999


Q ss_pred             CCEEEEEec-CCCC--CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          495 GDLIAFSSN-RHNP--DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       495 G~~l~~~~~-~~~~--~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      |+++|.... +...  .......|++||+++++...-...+.          +..++|||||++||.+. . +       
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----------p~~ia~spdg~~l~v~n-~-~-------  325 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----------ALSMTIDQQRNLMLTLD-G-G-------  325 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----------CCEEEEETTTTEEEEEC-S-S-------
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----------eeEEEECCCCCEEEEeC-C-C-------
Confidence            999887754 1100  00123579999998876554333221          36899999999776544 3 2       


Q ss_pred             CCCCCCCCCcEEEEEcCCC--ce-eeccCCCCCCCCcEEecCCc
Q 039497          572 WPNQFQPYGDLYVVKLDGS--GL-RRLTWNGYENGTPAWHPGNQ  612 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~--~~-~~lt~~~~~~~~~~~s~dg~  612 (642)
                               .|.+||..++  ++ ..+...+.....++++|||+
T Consensus       326 ---------~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          326 ---------NVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ---------CEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             ---------eEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence                     7999999888  53 33333444556789999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.53  E-value=2.1e-12  Score=131.48  Aligned_cols=270  Identities=12%  Similarity=0.046  Sum_probs=160.8

Q ss_pred             cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-CcceEeeCCeEEEEEecCCC
Q 039497          135 LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-GWPTWSGDSTIYFHRQADDG  213 (642)
Q Consensus       135 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~wspdg~~~~~~~~~~g  213 (642)
                      +..+.......+|||||++||....+.             +.+|++..++........+ ....|++++..++.....++
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-------------~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   81 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-------------FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKE   81 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-------------EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTT
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-------------EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCcc
Confidence            344555567899999999999875432             5688887665443322222 34588888876655434445


Q ss_pred             ceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCC
Q 039497          214 WWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANS  293 (642)
Q Consensus       214 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg  293 (642)
                        .|..+|..++.       ....+. ....+..+.+++++  ++++. .     ..+++||+....             
T Consensus        82 --~v~iWd~~~~~-------~~~~~~-~~~~v~~v~~~~~~--~~~~~-~-----~~i~i~d~~~~~-------------  130 (355)
T 3vu4_A           82 --VVHIWDDVKKQ-------DVSRIK-VDAPVKDLFLSREF--IVVSY-G-----DVISVFKFGNPW-------------  130 (355)
T ss_dssp             --EEEEEETTTTE-------EEEEEE-CSSCEEEEEECSSE--EEEEE-T-----TEEEEEESSTTC-------------
T ss_pred             --EEEEEECCCCc-------EEEEEE-CCCceEEEEEcCCE--EEEEE-c-----CEEEEEECCCCc-------------
Confidence              66667777763       333333 23356666777664  44432 2     268888873220             


Q ss_pred             CEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCC--------
Q 039497          294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--------  365 (642)
Q Consensus       294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--------  365 (642)
                                .      ....+.          .   ......+++  +.+++.+. .....|.++|+..+.        
T Consensus       131 ----------~------~~~~~~----------~---~~~~~~~s~--~~la~~sg-~~~g~v~iwd~~~~~~~~~~~~~  178 (355)
T 3vu4_A          131 ----------K------RITDDI----------R---FGGVCEFSN--GLLVYSNE-FNLGQIHITKLQSSGSATTQDQG  178 (355)
T ss_dssp             ----------C------BSSCCE----------E---EEEEEEEET--TEEEEEES-SCTTCEEEEECCC----------
T ss_pred             ----------e------eeEEec----------c---CCceEEEEc--cEEEEeCC-CcCcEEEEEECCCCCcccccccc
Confidence                      0      000000          0   001224555  66777622 234568888887654        


Q ss_pred             ---------eeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCe-EEEEEEEeecCCCCCCCCCccccceEEcc-c-
Q 039497          366 ---------RWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT-VQIARVSFQLDPSDDNNREEIPCDVKILT-K-  432 (642)
Q Consensus       366 ---------~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~-  432 (642)
                               ...+.. ...+..+.|+|||+.|+..+.       ++. +++|++..        +.     ....+. . 
T Consensus       179 ~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-------d~~~v~iwd~~~--------~~-----~~~~~~~g~  238 (355)
T 3vu4_A          179 VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-------DGTIIRVFKTED--------GV-----LVREFRRGL  238 (355)
T ss_dssp             --------CCEEECCCSSCEEEEEECTTSSEEEEEET-------TCSEEEEEETTT--------CC-----EEEEEECTT
T ss_pred             ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC-------CCCEEEEEECCC--------Cc-----EEEEEEcCC
Confidence                     222322 567889999999999998874       676 99999865        22     455555 2 


Q ss_pred             cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--------------------C-CCcccceeE
Q 039497          433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--------------------G-PWIDTMPSW  491 (642)
Q Consensus       433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--------------------~-~~~~~~~~~  491 (642)
                      +. ..+..++|||||++|+..+.+   ..|.+||+..+... ....+..                    . ......++|
T Consensus       239 h~-~~v~~~~~s~~~~~l~s~s~d---~~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (355)
T 3vu4_A          239 DR-ADVVDMKWSTDGSKLAVVSDK---WTLHVFEIFNDQDN-KRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW  313 (355)
T ss_dssp             CC-SCEEEEEECTTSCEEEEEETT---CEEEEEESSCCSCC-CSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred             CC-CcEEEEEECCCCCEEEEEECC---CEEEEEEccCCCCc-ccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence            44 678889999999999888743   47899998765420 0111111                    0 011245789


Q ss_pred             ecCCCEEEEEecCC
Q 039497          492 SPKGDLIAFSSNRH  505 (642)
Q Consensus       492 spdG~~l~~~~~~~  505 (642)
                      ++||+.|+....++
T Consensus       314 ~~d~~~l~~~~~dg  327 (355)
T 3vu4_A          314 ISESSLVVVWPHTR  327 (355)
T ss_dssp             SSSSEEEEEETTTT
T ss_pred             eCCCCEEEEEeCCC
Confidence            99999888887654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.53  E-value=8.3e-13  Score=133.35  Aligned_cols=290  Identities=9%  Similarity=-0.056  Sum_probs=178.9

Q ss_pred             CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc
Q 039497          240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA  319 (642)
Q Consensus       240 ~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~  319 (642)
                      .+...+..++|+|+|++|+....++     .+.+|++.....             .....              ....  
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~-----~v~iw~~~~~~~-------------~~~~~--------------~~~~--   54 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDG-----SLTVYKFDIQAK-------------NVDLL--------------QSLR--   54 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTS-----EEEEEEEETTTT-------------EEEEE--------------EEEE--
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCC-----eEEEEEeCCCCc-------------cccce--------------eeee--
Confidence            4456788889999999888865443     899998743210             00000              0000  


Q ss_pred             CCCceeEEeeeCCCccEEcCCCC-EEEEEecCCCceeEEEEEC-CCCCeeEEe---ecCCceeeeeecCCCEEEEEEcCC
Q 039497          320 SPVKELRMLRLNGSFPSFSPDGG-LIVFNHDFELNAGIKIAKS-DGSKRWTLI---KDRTAFYNSWSPTEKHVIYTSTGP  394 (642)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~l~~~d~-~~~~~~~l~---~~~~~~~~~~spdg~~l~~~~~~~  394 (642)
                              .......+.|+|+++ .|+....   ...|.++++ .+++...+.   ....+..+.|+| ++.|+..+.  
T Consensus        55 --------~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~--  120 (342)
T 1yfq_A           55 --------YKHPLLCCNFIDNTDLQIYVGTV---QGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASW--  120 (342)
T ss_dssp             --------CSSCEEEEEEEESSSEEEEEEET---TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEET--
T ss_pred             --------cCCceEEEEECCCCCcEEEEEcC---CCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcC--
Confidence                    001112458999999 8887654   367899999 888765554   245678899999 888887764  


Q ss_pred             CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC-Cccc
Q 039497          395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN-GEFN  473 (642)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~  473 (642)
                           ++.+++|++...........+.    ....+. .. ..+..+.|+|++  |+..+.   ...|.+||+.+ +.. 
T Consensus       121 -----d~~i~iwd~~~~~~~~~~~~~~----~~~~~~-~~-~~v~~~~~~~~~--l~~~~~---d~~i~i~d~~~~~~~-  183 (342)
T 1yfq_A          121 -----DGLIEVIDPRNYGDGVIAVKNL----NSNNTK-VK-NKIFTMDTNSSR--LIVGMN---NSQVQWFRLPLCEDD-  183 (342)
T ss_dssp             -----TSEEEEECHHHHTTBCEEEEES----CSSSSS-SC-CCEEEEEECSSE--EEEEES---TTEEEEEESSCCTTC-
T ss_pred             -----CCeEEEEcccccccccccccCC----eeeEEe-eC-CceEEEEecCCc--EEEEeC---CCeEEEEECCccccc-
Confidence                 6889999875300000000010    122222 33 567788999988  555553   23799999987 542 


Q ss_pred             cceeeCCCCCCcccceeEec-CCCEEEEEecCCCCCCCCceeEEEEeCCCC------ceEEeeecCCCC-CCCccccccc
Q 039497          474 GDIRQLTDGPWIDTMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVIKPDGS------GLRRIHVAGPEG-SGDVDRERIN  545 (642)
Q Consensus       474 ~~~~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~------~~~~l~~~~~~~-~~~~~~~~~~  545 (642)
                      ............+..+.|+| +|++|+..+.++.        |.+|+++..      +........... ........+.
T Consensus       184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~--------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (342)
T 1yfq_A          184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR--------VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN  255 (342)
T ss_dssp             CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE--------EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred             cceeeecCCCCceeEEEECCCCCCEEEEEecCCc--------EEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence            00123334455677889999 9999988887653        777777654      332222211110 0000011467


Q ss_pred             ceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCC-CCCCCCcEEecCCceEEeecCCC
Q 039497          546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWN-GYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       546 ~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~-~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      .+.|+|||++|+..+.++                 .|++|++..++ +..+..+ ...+..++  ||++++++....+
T Consensus       256 ~~~~s~~~~~l~~~~~dg-----------------~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          256 SIEFSPRHKFLYTAGSDG-----------------IISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             EEEECTTTCCEEEEETTS-----------------CEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             EEEEcCCCCEEEEecCCc-----------------eEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence            899999999888777554                 78999998766 4455554 55555666  9999998776655

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.52  E-value=7.4e-12  Score=126.15  Aligned_cols=310  Identities=11%  Similarity=0.054  Sum_probs=165.1

Q ss_pred             ccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCce--eEe--ecCC---CcceEee--CCeEEE
Q 039497          136 TPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKR--VIV--CERG---GWPTWSG--DSTIYF  206 (642)
Q Consensus       136 t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~l~--~~~~---~~~~wsp--dg~~~~  206 (642)
                      ..+.......+|||||++||....++            .|.+|++.++...  .+.  ..+.   ..++|+|  |+.+++
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg------------~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~   75 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQ------------HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIA   75 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTS------------EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCC------------eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEE
Confidence            34455566789999999999987665            7899999876422  111  2222   2459999  688888


Q ss_pred             EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecC--CcEEEEEEeccCCceeeEEEEEeecCCCCcc
Q 039497          207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHD--GKRLAVATRRKNRNFRHIEIYDLTLNPNFHH  284 (642)
Q Consensus       207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Spd--G~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~  284 (642)
                      +. ..+|...||.++................+..+...+..++|+|+  |++|+....++     .+.+||+........
T Consensus        76 s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           76 SA-SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG-----ILRLYDALEPSDLRS  149 (351)
T ss_dssp             EE-ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC-----EEEEEECSSTTCTTC
T ss_pred             EE-cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC-----cEEEecCCChHHhcc
Confidence            77 56787777766543210000000023445566667888999999  99888865544     899999844321111


Q ss_pred             cCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCC---CCEEEEEecCCCceeEEEEEC
Q 039497          285 YNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPD---GGLIVFNHDFELNAGIKIAKS  361 (642)
Q Consensus       285 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd---g~~l~~~~~~~~~~~l~~~d~  361 (642)
                                 +......             ........   ........+.|+|+   ++.++....   ...+...+.
T Consensus       150 -----------~~~~~~~-------------~~~~~~~~---~~~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~~~  199 (351)
T 3f3f_A          150 -----------WTLTSEM-------------KVLSIPPA---NHLQSDFCLSWCPSRFSPEKLAVSAL---EQAIIYQRG  199 (351)
T ss_dssp             -----------CEEEEEE-------------ESCSCCCS---SCSCCCEEEEECCCSSSCCEEEEEET---TEEEEEEEC
T ss_pred             -----------ccccccc-------------cccccccC---CcccceeEEEeccCCCCCcEEEEecC---CCcEEEEcc
Confidence                       0000000             00000000   00011235578887   887777654   244555555


Q ss_pred             CCCCeeEEee----cCCceeeeeecCC----CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc
Q 039497          362 DGSKRWTLIK----DRTAFYNSWSPTE----KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE  433 (642)
Q Consensus       362 ~~~~~~~l~~----~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  433 (642)
                      ..+....+..    ...+..+.|+|++    +.|+..+       .++.+++|++..  .      .     ........
T Consensus       200 ~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~-------~dg~i~iwd~~~--~------~-----~~~~~~~~  259 (351)
T 3f3f_A          200 KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC-------KDGRIRIFKITE--K------L-----SPLASEES  259 (351)
T ss_dssp             TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE-------TTSCEEEEEEEE--C------C-------------
T ss_pred             CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc-------CCCeEEEEeCCC--C------c-----CccccCCc
Confidence            5555433332    4568899999998    5666665       378999999987  1      1     11111111


Q ss_pred             CCCCccCcEECCCCCeEEEEeCCCC-ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCc
Q 039497          434 ETGNNAFPSCSPDGKFLVFRSGRSG-HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA  512 (642)
Q Consensus       434 ~~~~~~~~~~SpDg~~l~~~~~~~g-~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~  512 (642)
                      . ........+++...+........ ...+.+++...++.   +..+..+...+..++|+|+|++|+..+.++.      
T Consensus       260 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~------  329 (351)
T 3f3f_A          260 L-TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL---LSEHDDHNGEVWSVSWNLTGTILSSAGDDGK------  329 (351)
T ss_dssp             --------------------------------CCSEEEEE---EEEECTTSSCEEEEEECSSSCCEEEEETTSC------
T ss_pred             c-cceeccCCCcccccccccccccccceeeeecccccccE---EEEEecccccEEEEEEcCCCCEEEEecCCCc------
Confidence            1 12222333333333222211111 11222222222332   4445556667888999999999998887765      


Q ss_pred             eeEEEEeCCCCce
Q 039497          513 FSLYVIKPDGSGL  525 (642)
Q Consensus       513 ~~l~~~d~~~~~~  525 (642)
                        |.+|++..++.
T Consensus       330 --v~iw~~~~~~~  340 (351)
T 3f3f_A          330 --VRLWKATYSNE  340 (351)
T ss_dssp             --EEEEEECTTSC
T ss_pred             --EEEEecCcCcc
Confidence              89999977543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.51  E-value=9.8e-13  Score=137.98  Aligned_cols=256  Identities=10%  Similarity=0.049  Sum_probs=155.0

Q ss_pred             CCCCCccccceeec-CCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEee
Q 039497          239 TPPGVHCFTPAAFH-DGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEP  317 (642)
Q Consensus       239 ~~~~~~~~~~~~Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~  317 (642)
                      ..+...+..++|+| ||++|+....++     .|.+||+.........                         .......
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~-------------------------~~~~~~~  109 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQG-----VIKIWNLKEIIVGEVY-------------------------SSSLTYD  109 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTS-----EEEEEEHHHHHTTCCC-------------------------SCSEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCc-----eEEEeECcccccCccc-------------------------ceeeecc
Confidence            34445678889999 999998866444     8999998431100000                         0000000


Q ss_pred             ccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC---CCCeeEEeecCC--------------ceeee-
Q 039497          318 VASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD---GSKRWTLIKDRT--------------AFYNS-  379 (642)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~---~~~~~~l~~~~~--------------~~~~~-  379 (642)
                      .          ......+.|+|+++.|+.... +  ..|.+++++   .++.........              +..+. 
T Consensus       110 h----------~~~v~~~~~~~~~~~l~s~s~-d--g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  176 (437)
T 3gre_A          110 C----------SSTVTQITMIPNFDAFAVSSK-D--GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRA  176 (437)
T ss_dssp             C----------SSCEEEEEECTTSSEEEEEET-T--SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEE
T ss_pred             C----------CCCEEEEEEeCCCCEEEEEeC-C--CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEE
Confidence            0          011124588999998877654 2  456666653   333222211111              22222 


Q ss_pred             -eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc--cCCCCccCcEECCCCCeEEEEeCC
Q 039497          380 -WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--EETGNNAFPSCSPDGKFLVFRSGR  456 (642)
Q Consensus       380 -~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~SpDg~~l~~~~~~  456 (642)
                       ++|+++.|+..+.       ++.+++|++..        +.     ....+..  +. ..+..++|+|++++|+..+.+
T Consensus       177 ~~~~~~~~l~~~~~-------d~~i~iwd~~~--------~~-----~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d  235 (437)
T 3gre_A          177 FVNEEKSLLVALTN-------LSRVIIFDIRT--------LE-----RLQIIENSPRH-GAVSSICIDEECCVLILGTTR  235 (437)
T ss_dssp             EECSSCEEEEEEET-------TSEEEEEETTT--------CC-----EEEEEECCGGG-CCEEEEEECTTSCEEEEEETT
T ss_pred             EEcCCCCEEEEEeC-------CCeEEEEeCCC--------Ce-----eeEEEccCCCC-CceEEEEECCCCCEEEEEcCC
Confidence             5678888887764       78999999855        22     4455544  34 678889999999999887743


Q ss_pred             CCceeEEEEECCCCccccceeeCC-CCCCcccce----eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          457 SGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMP----SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       457 ~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~----~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                         ..|.+||+.+++.   +..+. .+...+..+    .|+|||++|+..+.++        .|.+||+.+++.......
T Consensus       236 ---g~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~  301 (437)
T 3gre_A          236 ---GIIDIWDIRFNVL---IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT--------FLTIWNFVKGHCQYAFIN  301 (437)
T ss_dssp             ---SCEEEEETTTTEE---EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE--------EEEEEETTTTEEEEEEES
T ss_pred             ---CeEEEEEcCCccE---EEEEecCCCCceEEEEeccccCCCccEEEEEcCCC--------cEEEEEcCCCcEEEEEEc
Confidence               4799999998875   45443 444455666    5566787777766554        399999987765443331


Q ss_pred             CCCCCC-------------------CcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497          532 GPEGSG-------------------DVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG  591 (642)
Q Consensus       532 ~~~~~~-------------------~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  591 (642)
                      . ....                   ......+..+.|+ ++++|+..+.++                 .|.+|++..++
T Consensus       302 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~-----------------~i~~wd~~~~~  361 (437)
T 3gre_A          302 S-DEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS-----------------SIVMFSLNELS  361 (437)
T ss_dssp             S-SSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT-----------------EEEEEETTCGG
T ss_pred             C-CCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC-----------------eEEEEECCCcc
Confidence            1 1000                   0011246778898 777676665554                 78899988765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.51  E-value=4.2e-11  Score=128.39  Aligned_cols=325  Identities=11%  Similarity=0.038  Sum_probs=181.3

Q ss_pred             ceEEEEccCCceEe-cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEec--CCCceeEeecCC--Cc
Q 039497          121 ALYSTDLKASKFTR-LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES--DPNKRVIVCERG--GW  195 (642)
Q Consensus       121 ~l~~~~~~~~~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~l~~~~~--~~  195 (642)
                      .|+.+|..+++... +..+ .....+.+||||++|+....+.            .|.++|+.  +++...-.....  ..
T Consensus       178 ~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg------------~V~viD~~~~t~~~v~~i~~G~~P~~  244 (567)
T 1qks_A          178 QIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDG------------KVNMIDLWMKEPTTVAEIKIGSEARS  244 (567)
T ss_dssp             EEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTS------------EEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             eEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCC------------eEEEEECCCCCCcEeEEEecCCCCce
Confidence            79999999887653 4433 2334689999999988765433            69999996  554332222111  24


Q ss_pred             ceEe----eCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCC-----------ccccceeecCCcEEEEE
Q 039497          196 PTWS----GDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGV-----------HCFTPAAFHDGKRLAVA  260 (642)
Q Consensus       196 ~~ws----pdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~SpdG~~l~~~  260 (642)
                      .++|    |||+.+|+.+...+  .+..+|..+.+       ....+...+.           .+..+..|+++..+++.
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~--~v~ViD~~t~~-------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPP--QYVIMDGETLE-------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETT--EEEEEETTTCC-------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             eEEccccCCCCCEEEEEEccCC--eEEEEECCCCc-------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence            5899    69988887755556  55566766652       2222221110           12233446666555443


Q ss_pred             EeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCC
Q 039497          261 TRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPD  340 (642)
Q Consensus       261 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  340 (642)
                      ....    ..|+++|....              +.+...                 .+... ..       .....|+||
T Consensus       316 ~~~~----g~v~~vd~~~~--------------~~~~v~-----------------~i~~~-~~-------~~d~~~~pd  352 (567)
T 1qks_A          316 VKET----GKILLVDYTDL--------------NNLKTT-----------------EISAE-RF-------LHDGGLDGS  352 (567)
T ss_dssp             ETTT----TEEEEEETTCS--------------SEEEEE-----------------EEECC-SS-------EEEEEECTT
T ss_pred             ecCC----CeEEEEecCCC--------------ccceee-----------------eeecc-cc-------ccCceECCC
Confidence            2221    14444443110              000000                 00000 00       013479999


Q ss_pred             CCEEEEEecCCCceeEEEEECCCCCeeEEeec-CCce----eee-eecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCC
Q 039497          341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-RTAF----YNS-WSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP  414 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~----~~~-~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~  414 (642)
                      |++++....  ....|.++|+++++......- +...    .+. ++|++..++++..     .+++.+.+++.+.  . 
T Consensus       353 gr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~-----~g~~~Vsvid~~~--~-  422 (567)
T 1qks_A          353 HRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSH-----MGDDSVALIGTDP--E-  422 (567)
T ss_dssp             SCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEB-----SSSSEEEEEECCT--T-
T ss_pred             CCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCC-----CCCCeEEEecCCC--C-
Confidence            998877663  356799999998876544432 2222    233 5788888877664     2345666666543  1 


Q ss_pred             CCCCCCCcc-ccceEEccccCCCCccCcEECCCCCeEEEEeCCCC----ceeEEEEECCCC-----ccccceeeC-----
Q 039497          415 SDDNNREEI-PCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVLDAVNG-----EFNGDIRQL-----  479 (642)
Q Consensus       415 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g----~~~l~~~d~~~g-----~~~~~~~~l-----  479 (642)
                          ..... -...+.+.... .....+..+||+++++....-+.    ...|.++|+.+.     ..  ..+.+     
T Consensus       423 ----~~~~~~~kvv~~i~~~g-~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~--~~~~~~~~~~  495 (567)
T 1qks_A          423 ----GHPDNAWKILDSFPALG-GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP--EFKTLPIAEW  495 (567)
T ss_dssp             ----TCTTTBTSEEEEEECSC-SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC--CEEEECHHHH
T ss_pred             ----CCccccCEEEEEEecCC-CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCC--CcEEeccccc
Confidence                00000 00334443322 22334678999999887653221    348999998765     21  01222     


Q ss_pred             ---CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          480 ---TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       480 ---~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                         ........++.|+|||++++++.-...   .....|.++|.++.++.....
T Consensus       496 ~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~---~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          496 AGITEGQPRVVQGEFNKDGTEVWFSVWNGK---DQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             HTCCSSCCEEEEEEECTTSSEEEEEEECCT---TSCCEEEEEETTTTEEEEEEC
T ss_pred             cccCCCCcceEeeeECCCCCEEEEEeecCC---CCCCcEEEEECCCceEEEEeC
Confidence               122345678899999999999853211   034569999999887765543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.51  E-value=9.2e-09  Score=111.58  Aligned_cols=496  Identities=12%  Similarity=0.057  Sum_probs=265.7

Q ss_pred             ceEEEEeecCCceeeeEEEecCCCCCCCCC--ceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcc-
Q 039497            5 GTIVFTTVGRPYYGFDVFSIKSPFVNAPKF--HEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKT-   81 (642)
Q Consensus         5 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~-   81 (642)
                      -.+.|+      ...+|.++++.+     .  +.+.+...-.......|. +.+.+|+|+..  ....|+.+...|... 
T Consensus        10 ~~~~~~------~~~~I~~i~~~~-----~~~~~~~~~~~~~~~~~ld~~-~~~~~ly~sD~--~~~~I~r~~~~g~~~~   75 (619)
T 3s94_A           10 PLLLYA------NRRDLRLVDATN-----GKENATIVVGGLEDAAAVDFV-FSHGLIYWSDV--SEEAIKRTEFNKTESV   75 (619)
T ss_dssp             CCEEEE------CSSBEEEECCC--------------CBCCSCEEEEEEE-TTTTEEEEEET--TTTEEEEEEC-----C
T ss_pred             ceEEEe------ccccEEEEeCCC-----CcceEEEEEcCCCceEEEEEE-eCCCEEEEEEC--CCCeEEEEEccCCCce
Confidence            356777      567999999987     4  233344444445566788 98888887643  344677775555311 


Q ss_pred             cccCCCCCCcccccccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEeccc-CCCccCCceeCCCCcEEEEEe
Q 039497           82 ELLPSIPCSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTP-YGVVDYSPSVSYSGKFIAVAS  158 (642)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~-~~~~~~~~~~SPDG~~la~~~  158 (642)
                      ..+.. ..+......++  .++.|+++....         +.|.+.++++...+.|.. ........++.|.+.+|.|+.
T Consensus        76 ~~v~~-~~~~~P~GlAvD~~~~~ly~~d~~~---------~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD  145 (619)
T 3s94_A           76 QNVVV-SGLLSPDGLACDWLGEKLYWTDSET---------NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD  145 (619)
T ss_dssp             EEEEC-SSCSCEEEEEEETTTTEEEEEETTT---------TEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred             EEEEe-CCCCCcCeEEEEecCCEEEEEeCCC---------CEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEec
Confidence            11100 11111223333  477888876542         268999998876666653 333456688999888888876


Q ss_pred             cCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcc---eEeeCC-eEEEEEecCCCceEEEEEecCCCcccccCCcc
Q 039497          159 YESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWP---TWSGDS-TIYFHRQADDGWWSIFRVSFPENLEFLGFPIA  234 (642)
Q Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~---~wspdg-~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~  234 (642)
                      ...          ...|+..++++...+.+......+|   +..+++ ++|++. ..  ...|++++.++.        .
T Consensus       146 ~g~----------~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD-~~--~~~I~~~~~dG~--------~  204 (619)
T 3s94_A          146 WGE----------VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD-AK--LNFIHKSNLDGT--------N  204 (619)
T ss_dssp             CSS----------SCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEE-TT--TCCEEEESSSCC--------E
T ss_pred             cCC----------CCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEe-CC--CCeEEEecCCCC--------c
Confidence            432          3478888888776666655444444   788766 555554 33  348999999876        3


Q ss_pred             ceeeCC-CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCC-eecCCCCEEEEE-Eee---cCCCC-
Q 039497          235 PTRVTP-PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNP-FVSANSEFIGYH-RFR---GESTE-  307 (642)
Q Consensus       235 ~~~l~~-~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~spDg~~l~~~-~~~---~~~~~-  307 (642)
                      .+.+.. .......+++  ++..|+++....    ..|+..|...+........ ...|.+  |.+. ...   +.... 
T Consensus       205 ~~~~~~~~~~~P~gi~~--~~~~ly~td~~~----~~V~~~d~~tg~~~~~i~~~~~~p~~--i~v~~~~~qp~~~n~C~  276 (619)
T 3s94_A          205 RQAVVKGSLPHPFALTL--FEDILYWTDWST----HSILACNKYTGEGLREIHSDIFSPMD--IHAFSQQRQPNATNPCG  276 (619)
T ss_dssp             EC---------CCCEEE--SSSEEEEECTTT----CSEEEEESSSCCCCEECCSCCCCCSE--EEECCGGGSCCCCCTTT
T ss_pred             cEEEEeCCCCCceEEEE--eCCEEEEecCCC----CEEEEEECCCCcccEEEecCCCCCcE--EEEEccccCCCcccccc
Confidence            333332 1112233444  444777754332    2566666532221100000 001111  1111 000   00000 


Q ss_pred             -CCcccceEeeccCCCceeEEeeeCCCccEEcCCC--------CEEEEEecCCCceeEEEEECCCCCeeEEee----cCC
Q 039497          308 -GQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDG--------GLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRT  374 (642)
Q Consensus       308 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg--------~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~  374 (642)
                       +...=..+..+........- .-. ....+.+|+        .+|+|..    ...|..++++......+..    -..
T Consensus       277 ~~ng~Cs~lCl~~~~~~~~~C-~C~-~g~~l~~d~~~C~~~~~~~Ll~~~----~~~i~~i~l~~~~~~~~~~~~~~l~~  350 (619)
T 3s94_A          277 IDNGGCSHLCLMSPVKPFYQC-ACP-TGVKLLENGKTCKDGATELLLLAR----RTDLRRISLDTPDFTDIVLQLEDIRH  350 (619)
T ss_dssp             TTGGGCSSEEEECSSTTSEEE-ECC-TTCCBCTTSSCBCSSCSEEEEEEE----SSCEEEEESSSTTCCCEECCCSCCSS
T ss_pred             CCCCcccceEECCCCCCCceE-eCC-chheecccCcccCCCCceEEEEEc----ccceEEEecCCCccceeEEeccccCc
Confidence             00000000000000000000 000 011223332        2455543    2578888888765433221    234


Q ss_pred             ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497          375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS  454 (642)
Q Consensus       375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~  454 (642)
                      ...+.|.+.+..|+++..        ..-.|+.+..  +     +.     ..+.+..........+++.+.++.|+++.
T Consensus       351 ~~~ld~d~~~~~ly~sD~--------~~~~I~r~~~--~-----g~-----~~~~v~~~~~~~p~GlAvD~~~~~lY~tD  410 (619)
T 3s94_A          351 AIAIDYDPVEGYIYWTDD--------EVRAIRRSFI--D-----GS-----GSQFVVTAQIAHPDGIAVDWVARNLYWTD  410 (619)
T ss_dssp             EEEEEEETTTTEEEEEET--------TTTEEEEEET--T-----SC-----SCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred             cEEEEEEcCCCeEEEEeC--------CCCeEEEEEc--C-----CC-----ccEEEEECCCCCcCceEEecccCcEEEEe
Confidence            567889998888998873        2334666666  3     22     22333222213456688888788898886


Q ss_pred             CCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497          455 GRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP  533 (642)
Q Consensus       455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  533 (642)
                      .  +...|.+.++++..    .+.|.. .-.....+++.|...+||++....      ...|++.++++...+.+.....
T Consensus       411 ~--~~~~I~v~~~~G~~----~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~------~~~I~r~~~dG~~~~~l~~~~l  478 (619)
T 3s94_A          411 T--GTDRIEVTRLNGTM----RKILISEDLEEPRAIVLDPMVGYMYWTDWGE------IPKIERAALDGSDRVVLVNTSL  478 (619)
T ss_dssp             T--TTTEEEEEETTSCS----CEEEECTTCCSEEEEEEETTTTEEEEEECSS------SCEEEEEETTSCSCEEEECSSC
T ss_pred             C--CCCcEEEEeCCCCe----EEEEEECCCCCeeeEEEEcCCCcEEEecCCC------CCEEEEEccCCCccEEEEeCCC
Confidence            5  44589999988544    344443 223445678999877888886532      3469999999887776654322


Q ss_pred             CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC-CCCCCCcEEecCCc
Q 039497          534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN-GYENGTPAWHPGNQ  612 (642)
Q Consensus       534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~-~~~~~~~~~s~dg~  612 (642)
                      .        .+..+++++++++||++....+                .|+.++++|...+.+... ......++...+ .
T Consensus       479 ~--------~P~GlalD~~~~~LY~aD~~~~----------------~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~  533 (619)
T 3s94_A          479 G--------WPNGLALDYDEGKIYWGDAKTD----------------KIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-Y  533 (619)
T ss_dssp             S--------CEEEEEEETTTTEEEEEETTTT----------------EEEEEESSSCCCEEEEECCCCSSCCEEEETT-E
T ss_pred             C--------CCeeeEEcccCCEEEEEECCCC----------------EEEEEecCCCceEEEeccCCCCcEEEEEECC-E
Confidence            2        4567899999999999876532                899999998876655432 223345555444 3


Q ss_pred             eEEe
Q 039497          613 LDLG  616 (642)
Q Consensus       613 ~~~~  616 (642)
                      +|++
T Consensus       534 ly~t  537 (619)
T 3s94_A          534 VYWT  537 (619)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            3443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.51  E-value=1.1e-11  Score=126.25  Aligned_cols=317  Identities=13%  Similarity=0.057  Sum_probs=165.8

Q ss_pred             CCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-CcceEeeCCeEEEEEecC-----CC--ceEEEE
Q 039497          148 SYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-GWPTWSGDSTIYFHRQAD-----DG--WWSIFR  219 (642)
Q Consensus       148 SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~wspdg~~~~~~~~~-----~g--~~~l~~  219 (642)
                      .||+++++.......      ......|+++|.++++......... ..++++|||+.+|+.+..     .|  .-.|..
T Consensus        12 ~~~~~~~yv~~~~~~------~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v   85 (361)
T 2oiz_A           12 APQENRIYVMDSVFM------HLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEV   85 (361)
T ss_dssp             SCGGGEEEEEECCGG------GGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEE
T ss_pred             CCCCCEEEEECCCCC------ccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEE
Confidence            368888766543210      0013479999998887654333211 256999999877776320     11  225777


Q ss_pred             EecCCCcccccCCccceeeCCC------CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCC
Q 039497          220 VSFPENLEFLGFPIAPTRVTPP------GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANS  293 (642)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg  293 (642)
                      ++..+.+       ....+...      +.....+++||||++|+++....   ...+.++|+...              
T Consensus        86 ~d~~t~~-------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~---~~~v~v~d~~~~--------------  141 (361)
T 2oiz_A           86 WDADKLT-------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASP---ATSIGIVDVAKG--------------  141 (361)
T ss_dssp             EETTTCC-------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESS---SEEEEEEETTTT--------------
T ss_pred             EECcCCc-------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCC---CCeEEEEECCCC--------------
Confidence            8887763       22333211      22355688999999988865321   236788877221              


Q ss_pred             CEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee-CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-
Q 039497          294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL-NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-  371 (642)
Q Consensus       294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-  371 (642)
                      +.+..                +...... ........ .......++||+.+++.....+.. +.....     ..... 
T Consensus       142 ~~~~~----------------~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~-~~~~~~-----~~~~~~  198 (361)
T 2oiz_A          142 DYVED----------------VTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV-ASQSRS-----KQMFSV  198 (361)
T ss_dssp             EEEEE----------------EGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSE-EEEEEC-----CCCSCT
T ss_pred             cEEEE----------------EecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE-eeeccc-----cceEcC
Confidence            10000                0000000 00000000 001224455665444433211111 101110     00001 


Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc--------cCCCCccCcEE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--------EETGNNAFPSC  443 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~  443 (642)
                      ......+.++|+++.+++...       .+.+.++++..  +      ...+. ....+..        .+ .....+++
T Consensus       199 ~~~~~~~~~~~~g~~~~~~~~-------~~~v~v~d~~~--~------~~~~~-~~~~~~~~~~~~~~~~p-~g~~~~a~  261 (361)
T 2oiz_A          199 KDDPIFIAPALDKDKAHFVSY-------YGNVYSADFSG--D------EVKVD-GPWSLLNDEDKAKNWVP-GGYNLVGL  261 (361)
T ss_dssp             TTSCBCSCCEECSSEEEEEBT-------TSEEEEEECSS--S------SCEEE-EEEESCCHHHHHTTCEE-CCSSCEEE
T ss_pred             CCCceEEEecccCCEEEEEeC-------CCeEEEEEecC--C------Cceec-ccccccCcccccccccc-CCeeEEEE
Confidence            122234456888988888763       34444444422  1      10000 0001100        01 11234789


Q ss_pred             CCCCCeEEEEeCCC--------CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497          444 SPDGKFLVFRSGRS--------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL  515 (642)
Q Consensus       444 SpDg~~l~~~~~~~--------g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l  515 (642)
                      +|||++++.....+        ....|+++|+++++.   +..+..+.  ...++|+|||++||..+. +.        |
T Consensus       262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~---v~~i~~~~--p~~ia~spdg~~l~v~n~-~~--------v  327 (361)
T 2oiz_A          262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR---VARIPGRD--ALSMTIDQQRNLMLTLDG-GN--------V  327 (361)
T ss_dssp             ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE---EEEEECTT--CCEEEEETTTTEEEEECS-SC--------E
T ss_pred             ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE---EEEEecCC--eeEEEECCCCCEEEEeCC-Ce--------E
Confidence            99999988765311        234899999999986   56665554  778899999998776654 32        9


Q ss_pred             EEEeCCCCceEEeee-cCCCCCCCcccccccceEEcCCCCE
Q 039497          516 YVIKPDGSGLRRIHV-AGPEGSGDVDRERINHVCFSADGEW  555 (642)
Q Consensus       516 ~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~  555 (642)
                      .+||+++++++.+.. .....       .+..+.++|||++
T Consensus       328 ~v~D~~t~~l~~~~~i~~~G~-------~P~~~~~~p~G~~  361 (361)
T 2oiz_A          328 NVYDISQPEPKLLRTIEGAAE-------ASLQVQFHPVGGT  361 (361)
T ss_dssp             EEEECSSSSCEEEEEETTSCS-------SEEEEEECCCSCC
T ss_pred             EEEECCCCcceeeEEeccCCC-------CcEEEEecCCCCC
Confidence            999999984444433 12222       4577899999963

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.51  E-value=4.2e-11  Score=125.84  Aligned_cols=307  Identities=12%  Similarity=0.127  Sum_probs=191.9

Q ss_pred             eeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCceEEEEEec
Q 039497          146 SVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGWWSIFRVSF  222 (642)
Q Consensus       146 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~~~l~~~~~  222 (642)
                      .+++||++||....++            .|.+|++.+++.......+..   .+.|+  +.++++. ..+|...  .++.
T Consensus       124 ~~~~~g~~l~sg~~dg------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~-~~dg~i~--vwd~  186 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDN------------TLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISG-STDRTLK--VWNA  186 (445)
T ss_dssp             EEEEETTEEEEEETTS------------CEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEE-ETTSCEE--EEET
T ss_pred             EEEEcCCEEEEEECCC------------cEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEE-eCCCeEE--EEEC
Confidence            5788999999888766            799999998876555443332   23555  4566666 4577544  4566


Q ss_pred             CCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEee
Q 039497          223 PENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFR  302 (642)
Q Consensus       223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~  302 (642)
                      .++.       ....+..+...+..+.+  +++.|+....++     .+.+||+..              ++.+....  
T Consensus       187 ~~~~-------~~~~~~~h~~~v~~~~~--~~~~l~s~s~dg-----~i~~wd~~~--------------~~~~~~~~--  236 (445)
T 2ovr_B          187 ETGE-------CIHTLYGHTSTVRCMHL--HEKRVVSGSRDA-----TLRVWDIET--------------GQCLHVLM--  236 (445)
T ss_dssp             TTTE-------EEEEECCCSSCEEEEEE--ETTEEEEEETTS-----EEEEEESSS--------------CCEEEEEE--
T ss_pred             CcCc-------EEEEECCCCCcEEEEEe--cCCEEEEEeCCC-----EEEEEECCC--------------CcEEEEEc--
Confidence            6653       44555555555555555  567777755443     888998732              11111110  


Q ss_pred             cCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeee
Q 039497          303 GESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSW  380 (642)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~  380 (642)
                                       .....+       ....+  +|+.++....   ...|.++|+.+++......  ...+..+.|
T Consensus       237 -----------------~~~~~v-------~~~~~--~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  287 (445)
T 2ovr_B          237 -----------------GHVAAV-------RCVQY--DGRRVVSGAY---DFMVKVWDPETETCLHTLQGHTNRVYSLQF  287 (445)
T ss_dssp             -----------------CCSSCE-------EEEEE--CSSCEEEEET---TSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred             -----------------CCcccE-------EEEEE--CCCEEEEEcC---CCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence                             000011       11233  6777777654   3678888987776444333  345666666


Q ss_pred             ecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCce
Q 039497          381 SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHK  460 (642)
Q Consensus       381 spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~  460 (642)
                        +++.|+..+.       ++.+++|++..        +.     ....+..+. ..+.  .++++++.|+..+.   +.
T Consensus       288 --~~~~l~~~~~-------d~~i~i~d~~~--------~~-----~~~~~~~~~-~~v~--~~~~~~~~l~~~~~---dg  339 (445)
T 2ovr_B          288 --DGIHVVSGSL-------DTSIRVWDVET--------GN-----CIHTLTGHQ-SLTS--GMELKDNILVSGNA---DS  339 (445)
T ss_dssp             --CSSEEEEEET-------TSCEEEEETTT--------CC-----EEEEECCCC-SCEE--EEEEETTEEEEEET---TS
T ss_pred             --CCCEEEEEeC-------CCeEEEEECCC--------CC-----EEEEEcCCc-ccEE--EEEEeCCEEEEEeC---CC
Confidence              8888887764       68899999855        22     444454443 3333  44557778777663   34


Q ss_pred             eEEEEECCCCccccceeeCCC---CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee-e---cCC
Q 039497          461 NLFVLDAVNGEFNGDIRQLTD---GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH-V---AGP  533 (642)
Q Consensus       461 ~l~~~d~~~g~~~~~~~~l~~---~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~---~~~  533 (642)
                      .|.+||+.+++.   +..+..   +...+..+.|  ++++|+..+.++.        |.+||+.+++..... .   ...
T Consensus       340 ~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~--------v~iwd~~~~~~~~~~~~~~~~~~  406 (445)
T 2ovr_B          340 TVKIWDIKTGQC---LQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGT--------VKLWDLKTGEFIRNLVTLESGGS  406 (445)
T ss_dssp             CEEEEETTTCCE---EEEECSTTSCSSCEEEEEE--CSSEEEEEETTSE--------EEEEETTTCCEEEEEEECTTGGG
T ss_pred             eEEEEECCCCcE---EEEEccCCCCCCCEEEEEE--CCCEEEEEeCCCe--------EEEEECCCCceeeeeeccccCCC
Confidence            799999988876   555553   3344555666  4678888877654        999999887654332 1   122


Q ss_pred             CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                      .+       .+..+.|+|+|..|+..+.++..             ...|+++|.+.
T Consensus       407 ~~-------~v~~~~~s~~~~~la~~~~dg~~-------------~~~l~v~df~~  442 (445)
T 2ovr_B          407 GG-------VVWRIRASNTKLVCAVGSRNGTE-------------ETKLLVLDFDV  442 (445)
T ss_dssp             TC-------EEEEEEECSSEEEEEEECSSSSS-------------CCEEEEEECCC
T ss_pred             Cc-------eEEEEEecCCEEEEEEcccCCCC-------------ccEEEEEECCC
Confidence            33       57889999999988888776531             23688888765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.50  E-value=7.2e-12  Score=127.51  Aligned_cols=273  Identities=8%  Similarity=0.047  Sum_probs=167.8

Q ss_pred             cceEeeC---CeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeE
Q 039497          195 WPTWSGD---STIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHI  271 (642)
Q Consensus       195 ~~~wspd---g~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i  271 (642)
                      .++|+|+   |.++++. ..+|...||.+...+..       ....+..+...+..++|+|+|++|+....++     .+
T Consensus        44 ~~~~~~~~~~g~~l~~~-~~dg~i~iw~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-----~v  110 (368)
T 3mmy_A           44 CLSFSPPTLPGNFLIAG-SWANDVRCWEVQDSGQT-------IPKAQQMHTGPVLDVCWSDDGSKVFTASCDK-----TA  110 (368)
T ss_dssp             EEEECCTTSSSEEEEEE-ETTSEEEEEEECTTSCE-------EEEEEEECSSCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred             EEEEcCCCCCceEEEEE-CCCCcEEEEEcCCCCce-------eEEEeccccCCEEEEEECcCCCEEEEEcCCC-----cE
Confidence            3699999   5888877 56786666666542321       2245555666788899999999999865444     88


Q ss_pred             EEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEE--cCCCCEEEEEec
Q 039497          272 EIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSF--SPDGGLIVFNHD  349 (642)
Q Consensus       272 ~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--spdg~~l~~~~~  349 (642)
                      .+||+..              ++.+.+..                 ..          .......|  +|+++.|+....
T Consensus       111 ~iwd~~~--------------~~~~~~~~-----------------~~----------~~v~~~~~~~~~~~~~l~~~~~  149 (368)
T 3mmy_A          111 KMWDLSS--------------NQAIQIAQ-----------------HD----------APVKTIHWIKAPNYSCVMTGSW  149 (368)
T ss_dssp             EEEETTT--------------TEEEEEEE-----------------CS----------SCEEEEEEEECSSCEEEEEEET
T ss_pred             EEEEcCC--------------CCceeecc-----------------cc----------CceEEEEEEeCCCCCEEEEccC
Confidence            8998732              11111110                 00          01123467  899987777654


Q ss_pred             CCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497          350 FELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK  428 (642)
Q Consensus       350 ~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  428 (642)
                         ...|.++|+..++...... ......+.+.  +..++....       ++.+.+|++..  .      ..    ...
T Consensus       150 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~i~~~~~~~--~------~~----~~~  205 (368)
T 3mmy_A          150 ---DKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATA-------ERGLIVYQLEN--Q------PS----EFR  205 (368)
T ss_dssp             ---TSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEG-------GGCEEEEECSS--S------CE----EEE
T ss_pred             ---CCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeC-------CCcEEEEEecc--c------cc----hhh
Confidence               3678999988776554443 4444444444  455665553       67888888855  1      10    222


Q ss_pred             EccccCCCCccCcEECCCCCe----EEEEeCCCCceeEEEEECCCCccccceeeCCCCCC------------cccceeEe
Q 039497          429 ILTKEETGNNAFPSCSPDGKF----LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW------------IDTMPSWS  492 (642)
Q Consensus       429 ~l~~~~~~~~~~~~~SpDg~~----l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~------------~~~~~~~s  492 (642)
                      .+............+.+++..    ++..+.   ...|.+|++..+........+..+..            .+..++|+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  282 (368)
T 3mmy_A          206 RIESPLKHQHRCVAIFKDKQNKPTGFALGSI---EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH  282 (368)
T ss_dssp             ECCCSCSSCEEEEEEEECTTSCEEEEEEEET---TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred             hccccccCCCceEEEcccCCCCCCeEEEecC---CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence            222222123334455554443    665553   34788888876531000233333322            46778999


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      |||++|+..+.++.        |++||+.+++...... .+..       .+..++|+|||++|+..+.++.
T Consensus       283 p~~~~l~s~~~dg~--------i~iwd~~~~~~~~~~~-~~~~-------~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          283 PVHGTLATVGSDGR--------FSFWDKDARTKLKTSE-QLDQ-------PISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             TTTCCEEEEETTSC--------EEEEETTTTEEEEECC-CCSS-------CEEEEEECTTSSCEEEEECCCS
T ss_pred             cCCCEEEEEccCCe--------EEEEECCCCcEEEEec-CCCC-------CceEEEECCCCCeEEEEecccc
Confidence            99999988887765        9999998876544332 3333       6788999999999999987653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.50  E-value=1.7e-12  Score=131.34  Aligned_cols=230  Identities=10%  Similarity=-0.009  Sum_probs=142.5

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cC--CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DR--TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~--~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      +.++++++.++....   ...|+++|+++++...... ..  ....+.|+|||+.+++...      ....+.+|++.. 
T Consensus         5 ~~~~~~~~~~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t-   74 (349)
T 1jmx_B            5 PALKAGHEYMIVTNY---PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDT-   74 (349)
T ss_dssp             CCCCTTCEEEEEEET---TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTT-
T ss_pred             ccccCCCEEEEEeCC---CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC------CCCcEEEEeCCC-
Confidence            456777665444432   4789999999887655444 33  5788999999998887763      356666666533 


Q ss_pred             cCCCCCCCCCccccceEEccccC-----CCCccCcEECCCCCeEEEEeCC---------CCceeEEEEECCCCcccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEE-----TGNNAFPSCSPDGKFLVFRSGR---------SGHKNLFVLDAVNGEFNGDIR  477 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDg~~l~~~~~~---------~g~~~l~~~d~~~g~~~~~~~  477 (642)
                              +.    ....+....     ......++|||||++|++....         .....|+++|+.+++....+.
T Consensus        75 --------~~----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  142 (349)
T 1jmx_B           75 --------CK----NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  142 (349)
T ss_dssp             --------TE----EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             --------Cc----EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence                    21    222332211     0225678999999999988742         012489999998865300011


Q ss_pred             eCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCC----------------C---
Q 039497          478 QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSG----------------D---  538 (642)
Q Consensus       478 ~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~----------------~---  538 (642)
                      .+ ..+..+..++|+|||+ |++. ...         |+++|+.+++.............                .   
T Consensus       143 ~~-~~~~~~~~~~~s~dg~-l~~~-~~~---------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (349)
T 1jmx_B          143 TF-PMPRQVYLMRAADDGS-LYVA-GPD---------IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF  210 (349)
T ss_dssp             EE-ECCSSCCCEEECTTSC-EEEE-SSS---------EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred             ec-cCCCcccceeECCCCc-EEEc-cCc---------EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence            12 2233456678999999 6653 221         99999988776544322210000                0   


Q ss_pred             -c----------------------------------------ccccccceEEcC-CCCEEEEEEecCCcccCCCCCCCCC
Q 039497          539 -V----------------------------------------DRERINHVCFSA-DGEWLLFTANLGAVMAEPVSWPNQF  576 (642)
Q Consensus       539 -~----------------------------------------~~~~~~~~~~S~-Dg~~l~~~~~~~~~~~~~~~~~~~~  576 (642)
                       .                                        ....+..+.||| ||++|++.  .+             
T Consensus       211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~-------------  275 (349)
T 1jmx_B          211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN-------------  275 (349)
T ss_dssp             EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES-------------
T ss_pred             EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC-------------
Confidence             0                                        000233567789 99988877  21             


Q ss_pred             CCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497          577 QPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       577 ~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                          .|++||+.+++.......+.....++|+|||++++..
T Consensus       276 ----~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          276 ----RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             ----EEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEE
T ss_pred             ----eEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEe
Confidence                8999999888764443334456789999999776553

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.50  E-value=8.5e-11  Score=119.78  Aligned_cols=302  Identities=10%  Similarity=0.048  Sum_probs=167.0

Q ss_pred             eCCeEEEEEec-CCCce-EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEec-----cCCceeeEE
Q 039497          200 GDSTIYFHRQA-DDGWW-SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRR-----KNRNFRHIE  272 (642)
Q Consensus       200 pdg~~~~~~~~-~~g~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~-----~~~~~~~i~  272 (642)
                      ||++.+|+.+. ..... .|+.+|..++        +.......+... .+++||||++|+++...     ++.....+.
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~--------~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCC--------eEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence            77777777632 22212 7888998887        333323333334 88999999999987532     111223566


Q ss_pred             EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497          273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL  352 (642)
Q Consensus       273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  352 (642)
                      ++|..+..              .+..                 ..+......  ........+.|||||++|++.... .
T Consensus       101 viD~~t~~--------------~~~~-----------------i~~~~~~~~--~~g~~p~~~~~spDG~~l~v~n~~-~  146 (373)
T 2mad_H          101 VFDPVTFL--------------PIAD-----------------IELPDAPRF--DVGPYSWMNANTPNNADLLFFQFA-A  146 (373)
T ss_pred             EEECCCCc--------------EEEE-----------------EECCCcccc--ccCCCccceEECCCCCEEEEEecC-C
Confidence            66652111              0000                 001000000  000112356899999998886532 2


Q ss_pred             ceeEEEEECCCCCeeEE-eecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          353 NAGIKIAKSDGSKRWTL-IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ...|.++| ++++.... ....  ..+.+.|+++..++...      .++.+.+++. .        ++     ......
T Consensus       147 ~~~v~viD-~t~~~~~~~i~~~--~~~~~~~~~~~~~~~~~------~dg~~~~vd~-~--------g~-----~~~~~~  203 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQLLSSP--TCYHIHPGAPSTFYLLC------AQGGLAKTDH-A--------GG-----AAGAGL  203 (373)
T ss_pred             CCeEEEEE-CCCCEEeEEcCCC--ceEEEEeCCCceEEEEc------CCCCEEEEEC-C--------Cc-----EEEEEe
Confidence            46799999 88876544 3321  12456677766655442      2455555544 3        11     111110


Q ss_pred             -----ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC--C--------CCCcccceeEecCCC
Q 039497          432 -----KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT--D--------GPWIDTMPSWSPKGD  496 (642)
Q Consensus       432 -----~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~--~--------~~~~~~~~~~spdG~  496 (642)
                           .........+.+++++..++|.+..   ..++++|+.++.. ..+..+.  .        .+.....+.++|||+
T Consensus       204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~v~vid~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~  279 (373)
T 2mad_H          204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYS---GKILQADISAAGA-TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD  279 (373)
T ss_pred             ccccccCCcceeecceeEecCCEEEEEcCC---ceEEEEeccCCcc-eEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence                 1110122346788888888887732   3899999976542 0011111  0        011122357899999


Q ss_pred             EEEEEecCCCCC--CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497          497 LIAFSSNRHNPD--NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN  574 (642)
Q Consensus       497 ~l~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~  574 (642)
                      +||.........  ......|+++|+++.+...-...+  .       .+..+.|||||++++|+.+.+.          
T Consensus       280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~-------~p~~i~~s~Dg~~~l~v~~~~~----------  340 (373)
T 2mad_H          280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--H-------DVDAISVAQDGGPDLYALSAGT----------  340 (373)
T ss_pred             EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--C-------CcCeEEECCCCCeEEEEEcCCC----------
Confidence            988876532100  012357999999987763322222  1       3578999999996666766432          


Q ss_pred             CCCCCCcEEEEEcCCCceeec
Q 039497          575 QFQPYGDLYVVKLDGSGLRRL  595 (642)
Q Consensus       575 ~~~~~~~l~~~~~~~~~~~~l  595 (642)
                           ..|.++|..++++...
T Consensus       341 -----~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          341 -----EVLHIYDAGAGDQDQS  356 (373)
T ss_pred             -----CeEEEEECCCCCEEee
Confidence                 2899999998775544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.49  E-value=1.2e-11  Score=125.88  Aligned_cols=225  Identities=14%  Similarity=0.059  Sum_probs=144.5

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ....++++++.++++...  ...|.++|..+++...... ...+..+.|+++.  ++.+.        +..+++|++.. 
T Consensus        62 ~~~~~~~~~~~~~~~~~~--d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~--------~~~i~i~d~~~-  128 (355)
T 3vu4_A           62 SKVRMLHRTNYVAFVTGV--KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSY--------GDVISVFKFGN-  128 (355)
T ss_dssp             CEEEECTTSSEEEEECSS--TTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEEE--------TTEEEEEESST-
T ss_pred             EEEEEcCCCCEEEEEECC--ccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEEE--------cCEEEEEECCC-
Confidence            345788889988776643  3588999998876544333 5667788888764  54444        56789998854 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE-eCCCCceeEEEEECCCCccc------------cc-ee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR-SGRSGHKNLFVLDAVNGEFN------------GD-IR  477 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~-~~~~g~~~l~~~d~~~g~~~------------~~-~~  477 (642)
                             ...    ....+..    ......+++  +.+++. ...+|  .|.+||+.+++..            .+ +.
T Consensus       129 -------~~~----~~~~~~~----~~~~~~~s~--~~la~~sg~~~g--~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~  189 (355)
T 3vu4_A          129 -------PWK----RITDDIR----FGGVCEFSN--GLLVYSNEFNLG--QIHITKLQSSGSATTQDQGVQQKAILGKGV  189 (355)
T ss_dssp             -------TCC----BSSCCEE----EEEEEEEET--TEEEEEESSCTT--CEEEEECCC------------------CCE
T ss_pred             -------Cce----eeEEecc----CCceEEEEc--cEEEEeCCCcCc--EEEEEECCCCCccccccccccccccCcccE
Confidence                   101    1222221    122356777  678887 34333  7889999876500            00 25


Q ss_pred             eCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEE
Q 039497          478 QLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWL  556 (642)
Q Consensus       478 ~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l  556 (642)
                      .+..+...+..++|+|||++|+..+.++.       .|.+||+.+++.......+ +..       .+..++|||||++|
T Consensus       190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~-------~v~iwd~~~~~~~~~~~~g~h~~-------~v~~~~~s~~~~~l  255 (355)
T 3vu4_A          190 LIKAHTNPIKMVRLNRKSDMVATCSQDGT-------IIRVFKTEDGVLVREFRRGLDRA-------DVVDMKWSTDGSKL  255 (355)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTCS-------EEEEEETTTCCEEEEEECTTCCS-------CEEEEEECTTSCEE
T ss_pred             EEEccCCceEEEEECCCCCEEEEEeCCCC-------EEEEEECCCCcEEEEEEcCCCCC-------cEEEEEECCCCCEE
Confidence            56667778889999999999988887641       2899999887665444322 444       67899999999999


Q ss_pred             EEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce---eeccC--------------------C-CCCCCCcEEecCCc
Q 039497          557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL---RRLTW--------------------N-GYENGTPAWHPGNQ  612 (642)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~lt~--------------------~-~~~~~~~~~s~dg~  612 (642)
                      +..+.++                 .|.+|++..+..   ..+..                    . ......++|++||+
T Consensus       256 ~s~s~d~-----------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~  318 (355)
T 3vu4_A          256 AVVSDKW-----------------TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS  318 (355)
T ss_dssp             EEEETTC-----------------EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE
T ss_pred             EEEECCC-----------------EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC
Confidence            8887664                 677778765421   11111                    0 01125679999998


Q ss_pred             eEEeecCC
Q 039497          613 LDLGKLRL  620 (642)
Q Consensus       613 ~~~~~~~~  620 (642)
                      +++.....
T Consensus       319 ~l~~~~~d  326 (355)
T 3vu4_A          319 LVVVWPHT  326 (355)
T ss_dssp             EEEEETTT
T ss_pred             EEEEEeCC
Confidence            88766543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.48  E-value=7.1e-11  Score=124.09  Aligned_cols=309  Identities=10%  Similarity=0.057  Sum_probs=192.9

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      ..++++|.++++. ..+|...+  ++..++.       ....+..+...+..++++  ++.|+....++     .+.+||
T Consensus       123 ~~~~~~g~~l~sg-~~dg~i~v--wd~~~~~-------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg-----~i~vwd  185 (445)
T 2ovr_B          123 TCLQFCGNRIVSG-SDDNTLKV--WSAVTGK-------CLRTLVGHTGGVWSSQMR--DNIIISGSTDR-----TLKVWN  185 (445)
T ss_dssp             EEEEEETTEEEEE-ETTSCEEE--EETTTCC-------EEEECCCCSSCEEEEEEE--TTEEEEEETTS-----CEEEEE
T ss_pred             EEEEEcCCEEEEE-ECCCcEEE--EECCCCc-------EEEEEcCCCCCEEEEEec--CCEEEEEeCCC-----eEEEEE
Confidence            3678888888877 45775444  5556653       445556666566666665  66677754443     788888


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG  355 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  355 (642)
                      +...              +.+...                   ......+.       ...|  +++.++..+.   ...
T Consensus       186 ~~~~--------------~~~~~~-------------------~~h~~~v~-------~~~~--~~~~l~s~s~---dg~  220 (445)
T 2ovr_B          186 AETG--------------ECIHTL-------------------YGHTSTVR-------CMHL--HEKRVVSGSR---DAT  220 (445)
T ss_dssp             TTTT--------------EEEEEE-------------------CCCSSCEE-------EEEE--ETTEEEEEET---TSE
T ss_pred             CCcC--------------cEEEEE-------------------CCCCCcEE-------EEEe--cCCEEEEEeC---CCE
Confidence            7321              111100                   00001111       1233  4566666553   367


Q ss_pred             EEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc
Q 039497          356 IKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE  433 (642)
Q Consensus       356 l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  433 (642)
                      |.++|+.+++......  ...+..+.|  +++.|+..+.       ++.+.+|++..        +.     ....+..+
T Consensus       221 i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-------dg~i~iwd~~~--------~~-----~~~~~~~~  278 (445)
T 2ovr_B          221 LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-------DFMVKVWDPET--------ET-----CLHTLQGH  278 (445)
T ss_dssp             EEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET-------TSCEEEEEGGG--------TE-----EEEEECCC
T ss_pred             EEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC-------CCEEEEEECCC--------Cc-----EeEEecCC
Confidence            8889998877554443  445666666  7888887764       68899998755        12     34455544


Q ss_pred             CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCce
Q 039497          434 ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAF  513 (642)
Q Consensus       434 ~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~  513 (642)
                      . ..+..+.|  |+++|+..+.+   ..|.+||+.+++.   +..+..+...+.  .+++++++|+..+.++.       
T Consensus       279 ~-~~v~~~~~--~~~~l~~~~~d---~~i~i~d~~~~~~---~~~~~~~~~~v~--~~~~~~~~l~~~~~dg~-------  340 (445)
T 2ovr_B          279 T-NRVYSLQF--DGIHVVSGSLD---TSIRVWDVETGNC---IHTLTGHQSLTS--GMELKDNILVSGNADST-------  340 (445)
T ss_dssp             S-SCEEEEEE--CSSEEEEEETT---SCEEEEETTTCCE---EEEECCCCSCEE--EEEEETTEEEEEETTSC-------
T ss_pred             C-CceEEEEE--CCCEEEEEeCC---CeEEEEECCCCCE---EEEEcCCcccEE--EEEEeCCEEEEEeCCCe-------
Confidence            4 55666666  88888877743   4799999998886   566665544444  44556888888877664       


Q ss_pred             eEEEEeCCCCceEEeeec--CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497          514 SLYVIKPDGSGLRRIHVA--GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG  591 (642)
Q Consensus       514 ~l~~~d~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  591 (642)
                       |.+||+.+++.......  .+..       .+..+.|  +++.|+..+.++                 .|.+|++..++
T Consensus       341 -i~vwd~~~~~~~~~~~~~~~~~~-------~v~~~~~--~~~~l~s~~~dg-----------------~v~iwd~~~~~  393 (445)
T 2ovr_B          341 -VKIWDIKTGQCLQTLQGPNKHQS-------AVTCLQF--NKNFVITSSDDG-----------------TVKLWDLKTGE  393 (445)
T ss_dssp             -EEEEETTTCCEEEEECSTTSCSS-------CEEEEEE--CSSEEEEEETTS-----------------EEEEEETTTCC
T ss_pred             -EEEEECCCCcEEEEEccCCCCCC-------CEEEEEE--CCCEEEEEeCCC-----------------eEEEEECCCCc
Confidence             99999987765443321  1222       4556666  567777776554                 78899988776


Q ss_pred             e-eec-----cCCCCCCCCcEEecCCceEEeecCCCcccccceeeeec
Q 039497          592 L-RRL-----TWNGYENGTPAWHPGNQLDLGKLRLEDDIGDKLRGQFD  633 (642)
Q Consensus       592 ~-~~l-----t~~~~~~~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~  633 (642)
                      . ..+     ..+...+..++|+|++.++++....|.....+....|+
T Consensus       394 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          394 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            4 344     13445567899999999988877666434444444444

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.47  E-value=3.4e-12  Score=127.56  Aligned_cols=241  Identities=13%  Similarity=0.069  Sum_probs=146.2

Q ss_pred             CCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeec
Q 039497          239 TPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPV  318 (642)
Q Consensus       239 ~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~  318 (642)
                      ..+...+..++|+|||++|+....++     .+++||+...              +.....                 .+
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~-----~v~lwd~~~~--------------~~~~~~-----------------~l   53 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDR-----SVKIFDVRNG--------------GQILIA-----------------DL   53 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTT-----EEEEEEEETT--------------EEEEEE-----------------EE
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCC-----eEEEEEecCC--------------CcEEEE-----------------EE
Confidence            44555678899999999998865544     8999998321              110000                 00


Q ss_pred             cCCCceeEEeeeCCCccEEcC--CCCEEEEEecCCCceeEEEEECCCCCeeEEe----ecCCceeeeeecC--CCEEEEE
Q 039497          319 ASPVKELRMLRLNGSFPSFSP--DGGLIVFNHDFELNAGIKIAKSDGSKRWTLI----KDRTAFYNSWSPT--EKHVIYT  390 (642)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~----~~~~~~~~~~spd--g~~l~~~  390 (642)
                      .+....       .....|+|  +|+.|+..+.   ...|.++|+.+++...+.    ....+..+.|+|+  |..|+..
T Consensus        54 ~gH~~~-------V~~v~~~~~~~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg  123 (316)
T 3bg1_A           54 RGHEGP-------VWQVAWAHPMYGNILASCSY---DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG  123 (316)
T ss_dssp             ECCSSC-------EEEEEECCGGGSSCEEEEET---TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEE
T ss_pred             cCCCcc-------EEEEEeCCCCCCCEEEEEEC---CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEE
Confidence            000001       12447875  4787777654   356777888776432222    1456889999998  6777766


Q ss_pred             EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC-----------------CCeEEEE
Q 039497          391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD-----------------GKFLVFR  453 (642)
Q Consensus       391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD-----------------g~~l~~~  453 (642)
                      +       .++.+++|++..        .+..  .....+..+. ..+..+.|+|+                 +++|+..
T Consensus       124 s-------~D~~i~lwd~~~--------~~~~--~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg  185 (316)
T 3bg1_A          124 S-------SDGAISLLTYTG--------EGQW--EVKKINNAHT-IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG  185 (316)
T ss_dssp             C-------SSSCEEEEEECS--------SSCE--EECCBTTSSS-SCBCCCEECCCCCC------CCSCCCCCCCBEECC
T ss_pred             c-------CCCCEEEEecCC--------CCCc--ceeeeecccc-CCcceEEEccccCCccccccccccCccccceEEEe
Confidence            5       378899999865        1100  0012222333 55677899998                 3556544


Q ss_pred             eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC----CEEEEEecCCCCCCCCceeEEEEeCCCCc-----
Q 039497          454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG----DLIAFSSNRHNPDNVEAFSLYVIKPDGSG-----  524 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG----~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-----  524 (642)
                      + .+  ..|.+||+.++........+..+...+..++|+|++    +.|+..+.++.        |.+|++....     
T Consensus       186 s-~D--~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~--------v~iw~~~~~~~~~~~  254 (316)
T 3bg1_A          186 G-CD--NLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR--------VFIWTCDDASSNTWS  254 (316)
T ss_dssp             B-TT--SBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE--------EEEEECSSTTCCCCB
T ss_pred             c-CC--CeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe--------EEEEEccCccccchh
Confidence            4 23  367777776442100134566666778889999997    77887777654        8999987521     


Q ss_pred             eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       525 ~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      .+.+.  .+..       .+..++|+|||+.|+..+.++
T Consensus       255 ~~~~~--~~~~-------~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          255 PKLLH--KFND-------VVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             CCEEE--ECSS-------CEEEEEECTTTCCEEEEESSS
T ss_pred             hhhhh--cCCC-------cEEEEEEcCCCCEEEEEcCCC
Confidence            12222  2233       578899999999998887765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.47  E-value=7.3e-11  Score=126.52  Aligned_cols=362  Identities=12%  Similarity=0.033  Sum_probs=197.8

Q ss_pred             CceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC-C-CcceEeeCCeEEEEEecCCCceEEEEEe
Q 039497          144 SPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER-G-GWPTWSGDSTIYFHRQADDGWWSIFRVS  221 (642)
Q Consensus       144 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~wspdg~~~~~~~~~~g~~~l~~~~  221 (642)
                      .+.++.|...++|+....          ...|.++|.++++........ . ..+.+||||+.+|+.+ .++  .|..+|
T Consensus       158 ~~~~~~d~~~~~~V~~~~----------~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~-~dg--~V~viD  224 (567)
T 1qks_A          158 QQMNDWDLENLFSVTLRD----------AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-RDG--KVNMID  224 (567)
T ss_dssp             SCCSCCCGGGEEEEEETT----------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-TTS--EEEEEE
T ss_pred             ccccccCCCceEEEEeCC----------CCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEc-CCC--eEEEEE
Confidence            355666655444444332          348999999998765433322 2 3569999998887773 455  688888


Q ss_pred             cC--CCcccccCCccceeeCCCCCccccceee----cCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCE
Q 039497          222 FP--ENLEFLGFPIAPTRVTPPGVHCFTPAAF----HDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEF  295 (642)
Q Consensus       222 ~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~S----pdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~  295 (642)
                      +.  +..       ...++.. +.....+++|    |||++++++....+    .+.++|..+.              +.
T Consensus       225 ~~~~t~~-------~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~----~v~ViD~~t~--------------~~  278 (567)
T 1qks_A          225 LWMKEPT-------TVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPP----QYVIMDGETL--------------EP  278 (567)
T ss_dssp             TTSSSCC-------EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETT----EEEEEETTTC--------------CE
T ss_pred             CCCCCCc-------EeEEEec-CCCCceeEEccccCCCCCEEEEEEccCC----eEEEEECCCC--------------cE
Confidence            74  442       3334433 3345678899    79999888765433    5666664211              11


Q ss_pred             EEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---c
Q 039497          296 IGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---D  372 (642)
Q Consensus       296 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~  372 (642)
                      +......+.            ..+..  .. ........+..|+++..+++..  ...+.|+++|........+..   .
T Consensus       279 ~~~i~~~~~------------~~~~~--~~-~p~~rva~i~~s~~~~~~vv~~--~~~g~v~~vd~~~~~~~~v~~i~~~  341 (567)
T 1qks_A          279 KKIQSTRGM------------TYDEQ--EY-HPEPRVAAILASHYRPEFIVNV--KETGKILLVDYTDLNNLKTTEISAE  341 (567)
T ss_dssp             EEEEECCEE------------CTTTC--CE-ESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEETTCSSEEEEEEEECC
T ss_pred             EEEEecccc------------ccccc--cc-cCCCceEEEEEcCCCCEEEEEe--cCCCeEEEEecCCCccceeeeeecc
Confidence            111110000            00000  00 0000001235678877666654  335789999987654333322   4


Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc-cCC-CCccCcE-ECCCCCe
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK-EET-GNNAFPS-CSPDGKF  449 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~~-~SpDg~~  449 (642)
                      .......|+|||++++.+..      ..+.+.++++..         ++    ....+.. ... ..-..+. ++|++..
T Consensus       342 ~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t---------~k----l~~~i~vgg~~Phpg~g~~~~~p~~g~  402 (567)
T 1qks_A          342 RFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKE---------GK----LVAIEDTGGQTPHPGRGANFVHPTFGP  402 (567)
T ss_dssp             SSEEEEEECTTSCEEEEEEG------GGTEEEEEETTT---------TE----EEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred             ccccCceECCCCCEEEEEeC------CCCeEEEEECCC---------Cc----EEEEEeccCcCCCCccceeeECCCCCc
Confidence            45667899999999988874      256666655432         21    1222222 110 0111233 5888888


Q ss_pred             EEEEeCCCCceeEEEEECCCCccc----cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC--
Q 039497          450 LVFRSGRSGHKNLFVLDAVNGEFN----GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS--  523 (642)
Q Consensus       450 l~~~~~~~g~~~l~~~d~~~g~~~----~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~--  523 (642)
                      +++++.- +...|.+++.++++.+    +.++.+.........+..+|||++|+.....+. +......|.++|+++.  
T Consensus       403 v~~t~~~-g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~-~~~~~~~v~v~d~~~~~~  480 (567)
T 1qks_A          403 VWATSHM-GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP-EAEISGSVAVFDIKAMTG  480 (567)
T ss_dssp             EEEEEBS-SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS-SHHHHTCEEEEEGGGCCC
T ss_pred             EEEeCCC-CCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCC-CcccCceEEEEECCcccc
Confidence            7766542 3347889998873310    113444433222234678999999887763221 0001346999998765  


Q ss_pred             ---ce--EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497          524 ---GL--RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL  595 (642)
Q Consensus       524 ---~~--~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  595 (642)
                         ..  +.+....+.+. ......+.++.|++||++|+++...+..            ....|.++|..+.+++..
T Consensus       481 ~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~s~~~~~~------------~~~~i~v~D~~t~~~~~~  544 (567)
T 1qks_A          481 DGSDPEFKTLPIAEWAGI-TEGQPRVVQGEFNKDGTEVWFSVWNGKD------------QESALVVVDDKTLELKHV  544 (567)
T ss_dssp             SSSCCCEEEECHHHHHTC-CSSCCEEEEEEECTTSSEEEEEEECCTT------------SCCEEEEEETTTTEEEEE
T ss_pred             cccCCCcEEecccccccc-CCCCcceEeeeECCCCCEEEEEeecCCC------------CCCcEEEEECCCceEEEE
Confidence               21  33321100000 0001256789999999999988432110            123899999888775543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.46  E-value=9.4e-12  Score=125.38  Aligned_cols=231  Identities=16%  Similarity=0.123  Sum_probs=153.3

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCe--eEE---ee-cCCceeeeeec--CCCEEEEEEcCCCcccCCCeEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR--WTL---IK-DRTAFYNSWSP--TEKHVIYTSTGPIFQSERATVQI  405 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~--~~l---~~-~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~l  405 (642)
                      .+.|+|+|++|+....   ...|.++++..+..  ..+   .. ...+..+.|+|  |++.|+..+.       ++.+++
T Consensus        16 ~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~-------dg~v~v   85 (351)
T 3f3f_A           16 DVVYDFYGRHVATCSS---DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY-------DKTVKL   85 (351)
T ss_dssp             EEEECSSSSEEEEEET---TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET-------TSCEEE
T ss_pred             EEEEcCCCCEEEEeeC---CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC-------CCeEEE
Confidence            5689999998887654   35677777765432  121   11 56788999999  6898888774       788999


Q ss_pred             EEEEeecCCCCCCCCCcc----ccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeC
Q 039497          406 ARVSFQLDPSDDNNREEI----PCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL  479 (642)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l  479 (642)
                      |++..  .      ....    ......+..+. ..+..+.|+|+  +++|+..+.   ...|.+||+.+++.   +..+
T Consensus        86 wd~~~--~------~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~---~~~~  150 (351)
T 3f3f_A           86 WEEDP--D------QEECSGRRWNKLCTLNDSK-GSLYSVKFAPAHLGLKLACLGN---DGILRLYDALEPSD---LRSW  150 (351)
T ss_dssp             EEECT--T------SCTTSSCSEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEET---TCEEEEEECSSTTC---TTCC
T ss_pred             EecCC--C------cccccccCcceeeeecccC-CceeEEEEcCCCCCcEEEEecC---CCcEEEecCCChHH---hccc
Confidence            99965  1      1000    00244444454 67888999999  998888774   34899999987764   1211


Q ss_pred             C-------------CCCCcccceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee-cCCCCCCCcccc
Q 039497          480 T-------------DGPWIDTMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV-AGPEGSGDVDRE  542 (642)
Q Consensus       480 ~-------------~~~~~~~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~  542 (642)
                      .             .....+..+.|+|+   ++.|+..+.++.        +..++...++...+.. ..+..       
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~h~~-------  215 (351)
T 3f3f_A          151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA--------IIYQRGKDGKLHVAAKLPGHKS-------  215 (351)
T ss_dssp             EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE--------EEEEECTTSCEEEEEECCCCCS-------
T ss_pred             cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc--------EEEEccCCCceeeeeecCCCCc-------
Confidence            1             23345667899997   888888876653        5556666665544433 23333       


Q ss_pred             cccceEEcCCC----CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC----------------------------
Q 039497          543 RINHVCFSADG----EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS----------------------------  590 (642)
Q Consensus       543 ~~~~~~~S~Dg----~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------  590 (642)
                      .+..+.|+|++    +.|+..+.++                 .|.+|++..+                            
T Consensus       216 ~i~~~~~~p~~~~~~~~l~s~~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
T 3f3f_A          216 LIRSISWAPSIGRWYQLIATGCKDG-----------------RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG  278 (351)
T ss_dssp             CEEEEEECCCSSCSSEEEEEEETTS-----------------CEEEEEEEECC---------------------------
T ss_pred             ceeEEEECCCCCCcceEEEEEcCCC-----------------eEEEEeCCCCcCccccCCcccceeccCCCccccccccc
Confidence            67889999998    6666665544                 5666666542                            


Q ss_pred             -------------------ceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          591 -------------------GLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       591 -------------------~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                                         .+..+..+...+..++|+|++++|++....+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg  328 (351)
T 3f3f_A          279 RSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDG  328 (351)
T ss_dssp             ------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTS
T ss_pred             ccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCC
Confidence                               2333444556678899999999998876544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.46  E-value=5.5e-11  Score=120.26  Aligned_cols=177  Identities=11%  Similarity=0.085  Sum_probs=119.0

Q ss_pred             ccEEcC--CCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          334 FPSFSP--DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       334 ~~~~sp--dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      ...|+|  +++.++..+.   ...|.++|+.+++...+..   ...+..+.|+|||+.|+..+.       ++.+++|++
T Consensus       130 ~~~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~-------dg~i~iwd~  199 (343)
T 3lrv_A          130 YMYGHNEVNTEYFIWADN---RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP-------DGILDVYNL  199 (343)
T ss_dssp             EEECCC---CCEEEEEET---TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT-------TSCEEEEES
T ss_pred             EEEcCCCCCCCEEEEEeC---CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC-------CCEEEEEEC
Confidence            457899  9998887654   3678889998887655443   345788999999998887653       789999998


Q ss_pred             EeecCCCCCCCCCccccce-EEccc-cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC---CC
Q 039497          409 SFQLDPSDDNNREEIPCDV-KILTK-EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD---GP  483 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~-~~l~~-~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~---~~  483 (642)
                      ..        +.     .. ..+.. +. ..+..+.|+|||++|+..+.  +  .|.+||+.+++.   +..+..   +.
T Consensus       200 ~~--------~~-----~~~~~~~~~h~-~~v~~l~fs~~g~~l~s~~~--~--~v~iwd~~~~~~---~~~~~~~~~~~  258 (343)
T 3lrv_A          200 SS--------PD-----QASSRFPVDEE-AKIKEVKFADNGYWMVVECD--Q--TVVCFDLRKDVG---TLAYPTYTIPE  258 (343)
T ss_dssp             SC--------TT-----SCCEECCCCTT-SCEEEEEECTTSSEEEEEES--S--BEEEEETTSSTT---CBSSCCCBC--
T ss_pred             CC--------CC-----CCccEEeccCC-CCEEEEEEeCCCCEEEEEeC--C--eEEEEEcCCCCc---ceeeccccccc
Confidence            65        22     23 45555 44 67888999999999988873  2  799999988764   333332   21


Q ss_pred             Cccc--ceeEecCCCEEEEEec-CCCCCCCCceeEEEEeCCCCc--eEEeeecCCCCCCCcccccccceEEcC---CCCE
Q 039497          484 WIDT--MPSWSPKGDLIAFSSN-RHNPDNVEAFSLYVIKPDGSG--LRRIHVAGPEGSGDVDRERINHVCFSA---DGEW  555 (642)
Q Consensus       484 ~~~~--~~~~spdG~~l~~~~~-~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~S~---Dg~~  555 (642)
                      ....  .++|+|+|++|+..+. ++        .|.+|+++.+.  ...       .       .+..+.|++   +++.
T Consensus       259 ~~~~~~~~~~~~~g~~l~~~s~~d~--------~i~v~~~~~~~~~~~~-------~-------~~~~~~~~~~~~~~~~  316 (343)
T 3lrv_A          259 FKTGTVTYDIDDSGKNMIAYSNESN--------SLTIYKFDKKTKNWTK-------D-------EESALCLQSDTADFTD  316 (343)
T ss_dssp             ---CCEEEEECTTSSEEEEEETTTT--------EEEEEEECTTTCSEEE-------E-------EEEECCC----CCCCE
T ss_pred             ccccceEEEECCCCCEEEEecCCCC--------cEEEEEEcccccceEe-------c-------CceeEecCccccccce
Confidence            2222  4899999999998776 33        26777664432  222       0       233456666   7777


Q ss_pred             EEEEEecC
Q 039497          556 LLFTANLG  563 (642)
Q Consensus       556 l~~~~~~~  563 (642)
                      |++.+.++
T Consensus       317 l~~~~~d~  324 (343)
T 3lrv_A          317 MDVVCGDG  324 (343)
T ss_dssp             EEEEEETT
T ss_pred             eEEEecCC
Confidence            77777654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.45  E-value=3e-12  Score=127.97  Aligned_cols=231  Identities=11%  Similarity=0.044  Sum_probs=147.7

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE---ee-cCCceeeeeec--CCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL---IK-DRTAFYNSWSP--TEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l---~~-~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      ..+|+|||++|+..+.   ...|.++|+.++....+   .. ...+..+.|+|  +++.|+..+.       ++.+++|+
T Consensus        18 ~v~~s~~g~~lasgs~---D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~-------D~~v~iWd   87 (316)
T 3bg1_A           18 DAQMDYYGTRLATCSS---DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY-------DRKVIIWR   87 (316)
T ss_dssp             EEEECGGGCEEEEEET---TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET-------TSCEEEEC
T ss_pred             EeeEcCCCCEEEEEeC---CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC-------CCEEEEEE
Confidence            4589999999888664   35677777766543222   21 56788999986  4888887764       78999999


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI  485 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~  485 (642)
                      +..        +..+   ....+..+. ..+..+.|+|+  |+.|+..+. +  ..|.+|++.++........+..+...
T Consensus        88 ~~~--------~~~~---~~~~~~~h~-~~V~~v~~~p~~~g~~lasgs~-D--~~i~lwd~~~~~~~~~~~~~~~h~~~  152 (316)
T 3bg1_A           88 EEN--------GTWE---KSHEHAGHD-SSVNSVCWAPHDYGLILACGSS-D--GAISLLTYTGEGQWEVKKINNAHTIG  152 (316)
T ss_dssp             CSS--------SCCC---EEEEECCCS-SCCCEEEECCTTTCSCEEEECS-S--SCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred             CCC--------Ccce---EEEEccCCC-CceEEEEECCCCCCcEEEEEcC-C--CCEEEEecCCCCCcceeeeeccccCC
Confidence            854        1111   233444444 67788999998  777776653 2  36888888765310001223344455


Q ss_pred             ccceeEecC-----------------CCEEEEEecCCCCCCCCceeEEEEeCCCCc-eEEee-ecCCCCCCCcccccccc
Q 039497          486 DTMPSWSPK-----------------GDLIAFSSNRHNPDNVEAFSLYVIKPDGSG-LRRIH-VAGPEGSGDVDRERINH  546 (642)
Q Consensus       486 ~~~~~~spd-----------------G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~~~~~~~~  546 (642)
                      +..+.|+|+                 +++|+..+.++.        |.+||+..+. .+.+. ..++..       .+..
T Consensus       153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~--------v~lWd~~~~~~~~~~~~l~~h~~-------~V~~  217 (316)
T 3bg1_A          153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL--------IKLWKEEEDGQWKEEQKLEAHSD-------WVRD  217 (316)
T ss_dssp             BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSB--------CCEEEECTTSCEEEEECCBCCSS-------CEEE
T ss_pred             cceEEEccccCCccccccccccCccccceEEEecCCCe--------EEEEEeCCCCccceeeecccCCC-------ceEE
Confidence            677899998                 356665555543        7888886542 22222 223444       6788


Q ss_pred             eEEcCCC----CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC-----ceeeccCCCCCCCCcEEecCCceEEee
Q 039497          547 VCFSADG----EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS-----GLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       547 ~~~S~Dg----~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      ++|+|++    +.|+..+.++                 .|.+|++...     ....+..+...+..++|+|+|++|++.
T Consensus       218 v~~sp~~~~~~~~las~s~D~-----------------~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~  280 (316)
T 3bg1_A          218 VAWAPSIGLPTSTIASCSQDG-----------------RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS  280 (316)
T ss_dssp             EECCCCSSCSCCEEEEEETTC-----------------EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred             EEecCCCCCCCceEEEEcCCC-----------------eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence            9999997    6677666554                 6777777652     123344445667899999999998876


Q ss_pred             cCCC
Q 039497          618 LRLE  621 (642)
Q Consensus       618 ~~~~  621 (642)
                      ...+
T Consensus       281 ~~D~  284 (316)
T 3bg1_A          281 GGDN  284 (316)
T ss_dssp             ESSS
T ss_pred             cCCC
Confidence            5433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.44  E-value=4.7e-08  Score=106.08  Aligned_cols=479  Identities=10%  Similarity=0.062  Sum_probs=264.5

Q ss_pred             CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeec--CCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCc
Q 039497            3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLT--DGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSK   80 (642)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt--~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~   80 (642)
                      |...|+|+      ...+|.++++.+     .....+.  ..-.......|. +++.+|+|+..  ....|+.+...|..
T Consensus         5 p~~~Ll~s------~~~~I~~i~l~~-----~~~~~~~~~~~~~~~~~l~~d-~~~~~lywtD~--~~~~I~r~~~~g~~   70 (628)
T 4a0p_A            5 PEAFLLFS------RRADIRRISLET-----NNNNVAIPLTGVKEASALDFD-VTDNRIYWTDI--SLKTISRAFMNGSA   70 (628)
T ss_dssp             CCCEEEEE------ETTEEEEEESSC-----TTCEEECCCCSCSCEEEEEEE-TTTTEEEEEET--TTTEEEEEETTSCS
T ss_pred             CCcEEEEE------eCCcEEEEECCC-----CCcceEEEcCCCCceEEEEEE-CCCCEEEEEEC--CCCeEEEEECCCCC
Confidence            45678888      667999999987     4332221  122334556688 98888887754  34567877666642


Q ss_pred             ccccCCCCCCcccccccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEeccc-CCCccCCceeCCCCcEEEEE
Q 039497           81 TELLPSIPCSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTP-YGVVDYSPSVSYSGKFIAVA  157 (642)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~-~~~~~~~~~~SPDG~~la~~  157 (642)
                      .+.+.. .........++  .++.|+++....         ..|++.++++...+.|.. ........++.|...+|.|+
T Consensus        71 ~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~---------~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           71 LEHVVE-FGLDYPEGMAVDWLGKNLYWADTGT---------NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             CEEEEC-SSCSCCCEEEEETTTTEEEEEETTT---------TEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred             cEEEEe-CCCCCcceEEEEeCCCEEEEEECCC---------CEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence            222111 01111112333  578888876532         269999998877666553 33334567899987888877


Q ss_pred             ecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCcc---eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCcc
Q 039497          158 SYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGWP---TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIA  234 (642)
Q Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~---~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~  234 (642)
                      ....          ...|+..++++...+.+.. ...+|   ++.+++..+|.....  ...|+++++++.        .
T Consensus       141 D~g~----------~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~--~~~I~~~d~dG~--------~  199 (628)
T 4a0p_A          141 EWGG----------KPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLD--TNLIESSNMLGL--------N  199 (628)
T ss_dssp             ECSS----------SCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETT--TTEEEEEETTSC--------S
T ss_pred             CCCC----------CCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECC--CCEEEEEcCCCC--------c
Confidence            5332          3478899988877666653 33344   788876444444233  348999998876        3


Q ss_pred             ceeeCCCCCccccceeecCCcEEEEEEeccC----------Cc----------eeeEEEEEeec---CCCCc-----c--
Q 039497          235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKN----------RN----------FRHIEIYDLTL---NPNFH-----H--  284 (642)
Q Consensus       235 ~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~----------~~----------~~~i~~~d~~~---~~~~~-----~--  284 (642)
                      .+.+.........+++  ++.+|+++....+          ..          ...|.++....   ...+.     -  
T Consensus       200 ~~v~~~~l~~P~glav--~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~  277 (628)
T 4a0p_A          200 REVIADDLPHPFGLTQ--YQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH  277 (628)
T ss_dssp             CEEEEECCSCEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSS
T ss_pred             eEEeeccCCCceEEEE--ECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcch
Confidence            3333222112223343  3456776643211          10          11222222200   00000     0  


Q ss_pred             ---------------cCCeecCCCC-------EEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeC----CCccEEc
Q 039497          285 ---------------YNPFVSANSE-------FIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLN----GSFPSFS  338 (642)
Q Consensus       285 ---------------~~~~~spDg~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s  338 (642)
                                     ....+.+|++       .|+|... .        .+....++.....-......    ...+.|.
T Consensus       278 ~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~-~--------~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d  348 (628)
T 4a0p_A          278 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQK-S--------AINRMVIDEQQSPDIILPIHSLRNVRAIDYD  348 (628)
T ss_dssp             EEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEET-T--------EEEEECCCTTCCCCEECCCTTCSCEEEEEEE
T ss_pred             hhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeecc-c--------eEEEEecccccCceEEEEehhcCCceEEEEe
Confidence                           0112233332       2222210 0        00001111110000011111    1245677


Q ss_pred             CCCCEEEEEecCCCceeEEEEECCCCCeeEEeec--------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD--------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~--------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      +.+++|++...  ....|+++++++.....+...        .....+++...++.||++..      ....+.  .++.
T Consensus       349 ~~~~~iy~sD~--~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~------~~~~I~--v~~~  418 (628)
T 4a0p_A          349 PLDKQLYWIDS--RQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCE------ATNVIN--VTRL  418 (628)
T ss_dssp             TTTTEEEEEET--TTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEET------TTTEEE--EEET
T ss_pred             cCCCeEEEEec--CcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcC------CCCEEE--EEEC
Confidence            77777877653  356799999888765544432        24667889999999998873      244444  4444


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccce
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMP  489 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~  489 (642)
                        +      |.    ..+.+..........+++.|...+|+++........|++.++++..    .+.|.. .-.....+
T Consensus       419 --~------G~----~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~----~~~l~~~~l~~P~gl  482 (628)
T 4a0p_A          419 --D------GR----SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE----REVLFFSGLSKPIAL  482 (628)
T ss_dssp             --T------SC----EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS----CEEEECSSCSCEEEE
T ss_pred             --C------CC----eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC----cEEEEeccCCCccEE
Confidence              3      21    2333332222456778999966788887643222389999998444    244433 22344677


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP  569 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~  569 (642)
                      ++++++++||+......       .|+.+++++...+.+......        .+..++.  ++..||++....      
T Consensus       483 a~D~~~~~LYw~D~~~~-------~I~~~~~dG~~r~~~~~~~~~--------~P~glav--~~~~ly~tD~~~------  539 (628)
T 4a0p_A          483 ALDSRLGKLFWADSDLR-------RIESSDLSGANRIVLEDSNIL--------QPVGLTV--FENWLYWIDKQQ------  539 (628)
T ss_dssp             EEETTTTEEEEEETTTT-------EEEEEETTSCSCEEEECSSCS--------CEEEEEE--ETTEEEEEETTT------
T ss_pred             EEeCCCCEEEEEeCCCC-------EEEEEeCCCCceEEEEcCCCC--------CcEEEEE--ECCEEEEEECCC------
Confidence            99999999999876543       499999998877766542222        2334444  556888887543      


Q ss_pred             CCCCCCCCCCCcEEEEEcCCCc-eeecc
Q 039497          570 VSWPNQFQPYGDLYVVKLDGSG-LRRLT  596 (642)
Q Consensus       570 ~~~~~~~~~~~~l~~~~~~~~~-~~~lt  596 (642)
                                ..|++++..+++ .+.|.
T Consensus       540 ----------~~i~~~~k~~G~~~~~i~  557 (628)
T 4a0p_A          540 ----------QMIEKIDMTGREGRTKVQ  557 (628)
T ss_dssp             ----------TEEEEEETTSSSCCEEEE
T ss_pred             ----------CeEEEEECcCCCCcEEEe
Confidence                      389999987443 44444

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.44  E-value=9e-12  Score=139.94  Aligned_cols=228  Identities=11%  Similarity=0.080  Sum_probs=156.7

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .+.|+|+|++|+....   ...|.++++.++....+..    ...+..+.|+|+  ++.|+.++.       ++.+++|+
T Consensus        14 ~l~~s~dg~~latg~~---dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~-------Dg~I~vwd   83 (753)
T 3jro_A           14 DAVLDYYGKRLATCSS---DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-------DGKVLIWK   83 (753)
T ss_dssp             EECCCSSSCCEEEEET---TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET-------TSCEEEEE
T ss_pred             EEEECCCCCeEEEEEC---CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC-------CCeEEEEE
Confidence            4578999998887654   3567777766443333322    556889999998  888888874       78999999


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC--CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI  485 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD--g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~  485 (642)
                      +..        +...   ....+..+. ..+..+.|+|+  |+.|+..+.   ...|.+||+.++.. .....+..+...
T Consensus        84 ~~~--------~~~~---~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~---dg~I~vwdl~~~~~-~~~~~~~~~~~~  147 (753)
T 3jro_A           84 EEN--------GRWS---QIAVHAVHS-ASVNSVQWAPHEYGPLLLVASS---DGKVSVVEFKENGT-TSPIIIDAHAIG  147 (753)
T ss_dssp             EET--------TEEE---EEEEECCCS-SCEEEEEECCGGGCSEEEEEET---TSEEEEEECCSSSC-CCCEEEECCSSC
T ss_pred             CCC--------Cccc---ccccccCCC-CCeEEEEECCCCCCCEEEEEeC---CCcEEEEEeecCCC-cceeEeecCCCc
Confidence            976        1100   223334444 67888999999  888888773   34899999987632 112344556667


Q ss_pred             ccceeEec-------------CCCEEEEEecCCCCCCCCceeEEEEeCCCCceE--Ee-eecCCCCCCCcccccccceEE
Q 039497          486 DTMPSWSP-------------KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR--RI-HVAGPEGSGDVDRERINHVCF  549 (642)
Q Consensus       486 ~~~~~~sp-------------dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l-~~~~~~~~~~~~~~~~~~~~~  549 (642)
                      +..+.|+|             |++.|+..+.++.        |++||+.++...  .+ +...+..       .+..+.|
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~--------I~iwd~~~~~~~~~~~~~~~~h~~-------~V~~l~~  212 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNL--------VKIWKYNSDAQTYVLESTLEGHSD-------WVRDVAW  212 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSC--------EEEEEEETTTTEEEEEEEECCCSS-------CEEEEEE
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCe--------EEEEeccCCcccceeeeeecCCCC-------cEEEEEe
Confidence            78889999             5888888887765        899998766421  11 1223344       6788999


Q ss_pred             cCC---CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc------eeeccCCCCCCCCcEEecCCceEEeecC
Q 039497          550 SAD---GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG------LRRLTWNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       550 S~D---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~lt~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      +|+   |+.|+..+.++                 .|.+|++..+.      ......+...+..++|+|+|+++++...
T Consensus       213 sp~~~~~~~l~s~s~Dg-----------------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  274 (753)
T 3jro_A          213 SPTVLLRSYLASVSQDR-----------------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (753)
T ss_dssp             CCCCSSSEEEEEEESSS-----------------CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred             ccCCCCCCEEEEEecCC-----------------EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence            999   78777776654                 67788877653      1222224456788999999999887644

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.43  E-value=2.7e-11  Score=122.55  Aligned_cols=179  Identities=11%  Similarity=0.055  Sum_probs=118.0

Q ss_pred             EcCCCCEEEEEecCCCceeEEEEECCCCCee-EEee--cCCceeeeeec--CCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-TLIK--DRTAFYNSWSP--TEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-~l~~--~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      -+.|+...++..    ...+.+++...++.. ....  ...+..+.|+|  +++.|+..+.       ++.+++|++.. 
T Consensus        91 ~s~D~~i~~w~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-------dg~i~~wd~~~-  158 (343)
T 3lrv_A           91 RGPCNRLLLLYP----GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN-------RGTIGFQSYED-  158 (343)
T ss_dssp             ECSTTEEEEEET----TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET-------TCCEEEEESSS-
T ss_pred             ecCCCeEEEEEc----cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC-------CCcEEEEECCC-
Confidence            345554444422    245666777776633 2222  35688999999  9999888774       78999999865 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccce-eeCCC-CCCcccce
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDI-RQLTD-GPWIDTMP  489 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~-~~l~~-~~~~~~~~  489 (642)
                             +.     ............+..++|+|||+.|+..+.   +..|.+||+.+++.   + ..+.. +...+..+
T Consensus       159 -------~~-----~~~~~~~~~~~~i~~~~~~pdg~~lasg~~---dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~l  220 (343)
T 3lrv_A          159 -------DS-----QYIVHSAKSDVEYSSGVLHKDSLLLALYSP---DGILDVYNLSSPDQ---ASSRFPVDEEAKIKEV  220 (343)
T ss_dssp             -------SC-----EEEEECCCSSCCCCEEEECTTSCEEEEECT---TSCEEEEESSCTTS---CCEECCCCTTSCEEEE
T ss_pred             -------Cc-----EEEEEecCCCCceEEEEECCCCCEEEEEcC---CCEEEEEECCCCCC---CccEEeccCCCCEEEE
Confidence                   22     222222222235778899999998887653   34899999998885   4 45665 66778899


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec--CCCCCCCccccccc--ceEEcCCCCEEEEEEe
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA--GPEGSGDVDRERIN--HVCFSADGEWLLFTAN  561 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~~~~~~~--~~~~S~Dg~~l~~~~~  561 (642)
                      +|+|+|++|+..+.+ .        |.+||+..++.......  ....       .+.  .+.|+|+|++|+..+.
T Consensus       221 ~fs~~g~~l~s~~~~-~--------v~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          221 KFADNGYWMVVECDQ-T--------VVCFDLRKDVGTLAYPTYTIPEF-------KTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             EECTTSSEEEEEESS-B--------EEEEETTSSTTCBSSCCCBC------------CCEEEEECTTSSEEEEEET
T ss_pred             EEeCCCCEEEEEeCC-e--------EEEEEcCCCCcceeecccccccc-------cccceEEEECCCCCEEEEecC
Confidence            999999999888844 2        99999987654321110  0011       122  4999999999988776

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.43  E-value=2.1e-10  Score=115.38  Aligned_cols=314  Identities=13%  Similarity=0.099  Sum_probs=172.4

Q ss_pred             eEeeCCeEEEEEecC--CCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEec-----cCCcee
Q 039497          197 TWSGDSTIYFHRQAD--DGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRR-----KNRNFR  269 (642)
Q Consensus       197 ~wspdg~~~~~~~~~--~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~-----~~~~~~  269 (642)
                      ...||++.+|+.+..  ...-.|+.+|..+.+       ....+.. +... .+++||||++|+++...     .+....
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~-------v~~~I~v-G~~P-~va~spDG~~lyVan~~~~r~~~G~~~~  109 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR-------VIGMIDG-GFLP-NPVVADDGSFIAHASTVFSRIARGERTD  109 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE-------EEEEEEE-CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe-------EEEEEEC-CCCC-cEEECCCCCEEEEEcccccccccCCCCC
Confidence            446899777776432  112489999998873       2333432 3223 38999999999886531     111233


Q ss_pred             eEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec
Q 039497          270 HIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD  349 (642)
Q Consensus       270 ~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  349 (642)
                      .+.++|..+..              .+.-.                 .+... ... ........+.++|||++++....
T Consensus       110 ~VsviD~~t~~--------------v~~~I-----------------~v~~g-~r~-~~g~~P~~~a~spDGk~lyVan~  156 (386)
T 3sjl_D          110 YVEVFDPVTLL--------------PTADI-----------------ELPDA-PRF-LVGTYPWMTSLTPDGKTLLFYQF  156 (386)
T ss_dssp             EEEEECTTTCC--------------EEEEE-----------------EETTC-CCC-CBSCCGGGEEECTTSSEEEEEEC
T ss_pred             EEEEEECCCCe--------------EEEEE-----------------ECCCc-ccc-ccCCCCceEEEcCCCCEEEEEEc
Confidence            57777762211              01100                 00000 000 00011235689999998777542


Q ss_pred             CCCceeEEEEECCCCCeeEEee-cC--------CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          350 FELNAGIKIAKSDGSKRWTLIK-DR--------TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       350 ~~~~~~l~~~d~~~~~~~~l~~-~~--------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                       .....|.++|+.+.+...... .+        .-..+..++||+.+++...      ..+.+ + .  .          
T Consensus       157 -~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~------~~g~v-~-~--~----------  215 (386)
T 3sjl_D          157 -SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG------TEGTP-E-I--T----------  215 (386)
T ss_dssp             -SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECC------SSSCC-E-E--E----------
T ss_pred             -CCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECC------CCCeE-E-E--e----------
Confidence             234789999999987654433 11        1111355666665444431      11222 1 1  1          


Q ss_pred             CccccceEEccccCCCCccCcEEC-CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-------------CCcc
Q 039497          421 EEIPCDVKILTKEETGNNAFPSCS-PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-------------PWID  486 (642)
Q Consensus       421 ~~~~~~~~~l~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-------------~~~~  486 (642)
                           ....+.........++.|. +||+ ++|.+..   .++|.+|..++..    +.+...             +...
T Consensus       216 -----~~~~~~~~~~~~~~~~~~~~~dG~-~~~vs~~---g~V~v~d~~~~~~----~v~~~~~~~~~~~~~~g~~p~g~  282 (386)
T 3sjl_D          216 -----HTEVFHPEDEFLINHPAYSQKAGR-LVWPTYT---GKIHQIDLSSGDA----KFLPAVEALTEAERADGWRPGGW  282 (386)
T ss_dssp             -----ECCCCSCTTSCBCSCCEEETTTTE-EEEEBTT---SEEEEEECTTSSC----EECCCEESSCHHHHHTTEEECSS
T ss_pred             -----ecceeccccccccccceeEcCCCc-EEEEeCC---CEEEEEECCCCcc----eeecceeccccccccccccCCCc
Confidence                 0011111110122235664 7885 5566642   3799999986542    222111             1122


Q ss_pred             cceeEecCCCEEEEEecCCCCC--CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          487 TMPSWSPKGDLIAFSSNRHNPD--NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      ....++|++++||.........  .....+|+++|+++++...-...+.         .+..+.+|+||+.++|+.+...
T Consensus       283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---------~~~~lavs~D~~~~ly~tn~~~  353 (386)
T 3sjl_D          283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---------EIDSINVSQDEKPLLYALSTGD  353 (386)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---------EECEEEECSSSSCEEEEEETTT
T ss_pred             ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC---------CcceEEECCCCCeEEEEEcCCC
Confidence            3468899999999875422100  1134789999999887654333221         3568999999985556655432


Q ss_pred             cccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecC
Q 039497          565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPG  610 (642)
Q Consensus       565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~d  610 (642)
                                     ..|.++|..++++..-....+....+.+++|
T Consensus       354 ---------------~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          354 ---------------KTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             ---------------TEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             ---------------CeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence                           2899999988775544444455567788887

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.2e-11  Score=139.02  Aligned_cols=243  Identities=12%  Similarity=0.110  Sum_probs=157.3

Q ss_pred             eCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEee
Q 039497          238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEP  317 (642)
Q Consensus       238 l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~  317 (642)
                      +..+...+..++|+|||++|+....++     .|.+||+....            ++.                   ...
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg-----~I~vwd~~~~~------------~~~-------------------~~~   48 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGET------------HKL-------------------IDT   48 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTT-----EEEEEEEETTE------------EEE-------------------EEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCC-----cEEEEecCCCC------------Ccc-------------------cee
Confidence            344555678889999999888865443     78888873110            000                   000


Q ss_pred             ccCCCceeEEeeeCCCccEEcCC--CCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecC--CCEEEE
Q 039497          318 VASPVKELRMLRLNGSFPSFSPD--GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPT--EKHVIY  389 (642)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spd--g~~l~~  389 (642)
                      +.+...       ....+.|+|+  |+.|+..+.   ...|.++++.+++...+..    ...+..+.|+|+  ++.++.
T Consensus        49 l~~h~~-------~V~~l~~s~~~~~~~l~s~s~---Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s  118 (753)
T 3jro_A           49 LTGHEG-------PVWRVDWAHPKFGTILASCSY---DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV  118 (753)
T ss_dssp             ECCCSS-------CEEEEEECCTTSCSEEEEEET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             ccCCcC-------ceEEEEecCCCCCCEEEEEeC---CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEE
Confidence            000001       1124588888  888887664   3567777877775333222    567889999999  898888


Q ss_pred             EEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC-------------CCCeEEEEeCC
Q 039497          390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP-------------DGKFLVFRSGR  456 (642)
Q Consensus       390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-------------Dg~~l~~~~~~  456 (642)
                      ++.       ++.+++|++..        ....   ....+..+. ..+..+.|+|             |++.|+..+.+
T Consensus       119 gs~-------dg~I~vwdl~~--------~~~~---~~~~~~~~~-~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d  179 (753)
T 3jro_A          119 ASS-------DGKVSVVEFKE--------NGTT---SPIIIDAHA-IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD  179 (753)
T ss_dssp             EET-------TSEEEEEECCS--------SSCC---CCEEEECCS-SCEEEEEECCCC---------CGGGCCEEEEETT
T ss_pred             EeC-------CCcEEEEEeec--------CCCc---ceeEeecCC-CceEEEEecCcccccccccccCCCCCEEEEEECC
Confidence            874       78999999865        2111   233344444 6778899999             68888877743


Q ss_pred             CCceeEEEEECCCCccc-cceeeCCCCCCcccceeEecC---CCEEEEEecCCCCCCCCceeEEEEeCCCCceEE---e-
Q 039497          457 SGHKNLFVLDAVNGEFN-GDIRQLTDGPWIDTMPSWSPK---GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR---I-  528 (642)
Q Consensus       457 ~g~~~l~~~d~~~g~~~-~~~~~l~~~~~~~~~~~~spd---G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l-  528 (642)
                         ..|.+||+.++... .....+..+...+..++|+|+   |++|+..+.++.        |++||+.++....   + 
T Consensus       180 ---g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~--------I~iwd~~~~~~~~~~~~~  248 (753)
T 3jro_A          180 ---NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT--------CIIWTQDNEQGPWKKTLL  248 (753)
T ss_dssp             ---SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC--------EEEEEESSSSSCCBCCBS
T ss_pred             ---CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE--------EEEecCCCCCCcceeEEe
Confidence               36888888766320 013445566677888999999   888888877664        8999998764221   1 


Q ss_pred             eecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          529 HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      ....+..       .+..+.|+|||+.|+..+.++
T Consensus       249 ~~~~~~~-------~v~~l~~spdg~~l~s~s~Dg  276 (753)
T 3jro_A          249 KEEKFPD-------VLWRASWSLSGNVLALSGGDN  276 (753)
T ss_dssp             SSSCCSS-------CCCCEEECTTTCCEEEECSSS
T ss_pred             ccCCCCC-------ceEEEEEcCCCCEEEEEcCCC
Confidence            1112222       567899999999988877654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.42  E-value=1.2e-11  Score=129.35  Aligned_cols=234  Identities=13%  Similarity=0.118  Sum_probs=145.5

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCC----------CCe-eEEee-cCCceeeeeecCCC-EEEEEEcCCCcccC
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG----------SKR-WTLIK-DRTAFYNSWSPTEK-HVIYTSTGPIFQSE  399 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~----------~~~-~~l~~-~~~~~~~~~spdg~-~l~~~~~~~~~~~~  399 (642)
                      ..++|+|++..+++....  ...|.++++..          ... ..+.. ...+..+.|+|+++ .|+...       .
T Consensus       132 ~~l~~~p~~~~~lat~~~--dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-------~  202 (430)
T 2xyi_A          132 NRARYMPQNACVIATKTP--SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS-------D  202 (430)
T ss_dssp             SEEEEETTEEEEEEEECS--SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC-------T
T ss_pred             EEEEECCCCCcEEEEECC--CCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe-------C
Confidence            567899985444444422  35677778764          222 22222 55688999999998 555554       3


Q ss_pred             CCeEEEEEEEeecCCCCCCCCCc--cccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee
Q 039497          400 RATVQIARVSFQLDPSDDNNREE--IPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR  477 (642)
Q Consensus       400 ~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~  477 (642)
                      ++.+.+|++..        ++..  .......+..+. ..+..+.|+|++..++++...  ...|.+||+.++.....+.
T Consensus       203 dg~i~vwd~~~--------~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~l~s~~~--dg~i~i~d~~~~~~~~~~~  271 (430)
T 2xyi_A          203 DHTICLWDINA--------TPKEHRVIDAKNIFTGHT-AVVEDVAWHLLHESLFGSVAD--DQKLMIWDTRNNNTSKPSH  271 (430)
T ss_dssp             TSCEEEEETTS--------CCBGGGEEECSEEECCCS-SCEEEEEECSSCTTEEEEEET--TSEEEEEETTCSCSSSCSE
T ss_pred             CCeEEEEeCCC--------CCCCCceeccceeecCCC-CCEeeeEEeCCCCCEEEEEeC--CCeEEEEECCCCCCCccee
Confidence            78899999854        1110  000123344444 667889999955444444433  3489999998763101134


Q ss_pred             eCCCCCCcccceeEecCCCEEE-EEecCCCCCCCCceeEEEEeCCCCc--eEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497          478 QLTDGPWIDTMPSWSPKGDLIA-FSSNRHNPDNVEAFSLYVIKPDGSG--LRRIHVAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       478 ~l~~~~~~~~~~~~spdG~~l~-~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      .+..+...+..++|+|+++.++ ..+.++        .|.+||+....  ...+.  .+..       .+..+.|+|+++
T Consensus       272 ~~~~~~~~v~~i~~~p~~~~~l~tg~~dg--------~v~vwd~~~~~~~~~~~~--~h~~-------~v~~i~~sp~~~  334 (430)
T 2xyi_A          272 TVDAHTAEVNCLSFNPYSEFILATGSADK--------TVALWDLRNLKLKLHSFE--SHKD-------EIFQVQWSPHNE  334 (430)
T ss_dssp             EEECCSSCEEEEEECSSCTTEEEEEETTS--------EEEEEETTCTTSCSEEEE--CCSS-------CEEEEEECSSCT
T ss_pred             EeecCCCCeEEEEeCCCCCCEEEEEeCCC--------eEEEEeCCCCCCCeEEee--cCCC-------CEEEEEECCCCC
Confidence            5555666788899999998644 444443        39999998633  22222  3333       578899999998


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC---------------CceeeccCCCCCCCCcEEecCCc-eEEeec
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG---------------SGLRRLTWNGYENGTPAWHPGNQ-LDLGKL  618 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~~lt~~~~~~~~~~~s~dg~-~~~~~~  618 (642)
                      .++++....+                .|.+|++..               ..+..+..+...+..+.|+|+++ ++++..
T Consensus       335 ~~l~s~~~d~----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s  398 (430)
T 2xyi_A          335 TILASSGTDR----------------RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS  398 (430)
T ss_dssp             TEEEEEETTS----------------CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             CEEEEEeCCC----------------cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence            7655554432                677778765               22334444555678999999998 555554


Q ss_pred             C
Q 039497          619 R  619 (642)
Q Consensus       619 ~  619 (642)
                      .
T Consensus       399 ~  399 (430)
T 2xyi_A          399 E  399 (430)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.40  E-value=5.8e-11  Score=124.18  Aligned_cols=190  Identities=12%  Similarity=0.161  Sum_probs=121.5

Q ss_pred             CccEEcCCCC-EEEEEecCCCceeEEEEECCCCCe--------eEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497          333 SFPSFSPDGG-LIVFNHDFELNAGIKIAKSDGSKR--------WTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERAT  402 (642)
Q Consensus       333 ~~~~~spdg~-~l~~~~~~~~~~~l~~~d~~~~~~--------~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  402 (642)
                      ..+.|+|+++ .|+....   ...|.++++..+..        ..+.. ...+..+.|+|++..++++.      ..++.
T Consensus       185 ~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~------~~dg~  255 (430)
T 2xyi_A          185 YGLSWNPNLNGYLLSASD---DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV------ADDQK  255 (430)
T ss_dssp             CCEEECTTSTTEEEEECT---TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE------ETTSE
T ss_pred             EEEEeCCCCCCeEEEEeC---CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE------eCCCe
Confidence            5789999998 6655433   46788888876321        11111 45688999999554444444      23789


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC-ccccceeeCCC
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG-EFNGDIRQLTD  481 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~~~~~l~~  481 (642)
                      +++|++..  .     ....   ....+..+. ..+..+.|+|++++++++...++  .|.+||+.+. +.   +..+..
T Consensus       256 i~i~d~~~--~-----~~~~---~~~~~~~~~-~~v~~i~~~p~~~~~l~tg~~dg--~v~vwd~~~~~~~---~~~~~~  319 (430)
T 2xyi_A          256 LMIWDTRN--N-----NTSK---PSHTVDAHT-AEVNCLSFNPYSEFILATGSADK--TVALWDLRNLKLK---LHSFES  319 (430)
T ss_dssp             EEEEETTC--S-----CSSS---CSEEEECCS-SCEEEEEECSSCTTEEEEEETTS--EEEEEETTCTTSC---SEEEEC
T ss_pred             EEEEECCC--C-----CCCc---ceeEeecCC-CCeEEEEeCCCCCCEEEEEeCCC--eEEEEeCCCCCCC---eEEeec
Confidence            99999865  1     1001   334444444 67788999999997666655444  7999999863 33   456666


Q ss_pred             CCCcccceeEecCCCEEEEE-ecCCCCCCCCceeEEEEeCCCCc------------eEEee-ecCCCCCCCcccccccce
Q 039497          482 GPWIDTMPSWSPKGDLIAFS-SNRHNPDNVEAFSLYVIKPDGSG------------LRRIH-VAGPEGSGDVDRERINHV  547 (642)
Q Consensus       482 ~~~~~~~~~~spdG~~l~~~-~~~~~~~~~~~~~l~~~d~~~~~------------~~~l~-~~~~~~~~~~~~~~~~~~  547 (642)
                      +...+..+.|+|+|+.++++ +.++.        |.+||+....            ...+. ..++..       .+..+
T Consensus       320 h~~~v~~i~~sp~~~~~l~s~~~d~~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~  384 (430)
T 2xyi_A          320 HKDEIFQVQWSPHNETILASSGTDRR--------LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-------KISDF  384 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSC--------CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-------CEEEE
T ss_pred             CCCCEEEEEECCCCCCEEEEEeCCCc--------EEEEeCCCCccccCccccccCCcceEEEcCCCCC-------CceEE
Confidence            66778899999999764444 44433        8999987521            12222 223333       57889


Q ss_pred             EEcCCCCEEEEEEec
Q 039497          548 CFSADGEWLLFTANL  562 (642)
Q Consensus       548 ~~S~Dg~~l~~~~~~  562 (642)
                      .|+|++++++++...
T Consensus       385 ~~~p~~~~~l~s~s~  399 (430)
T 2xyi_A          385 SWNPNEPWIICSVSE  399 (430)
T ss_dssp             EECSSSTTEEEEEET
T ss_pred             EECCCCCCEEEEEEC
Confidence            999999954444443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.39  E-value=1.3e-07  Score=102.58  Aligned_cols=469  Identities=12%  Similarity=0.037  Sum_probs=246.8

Q ss_pred             eeeEEEecCCCCCCCCCc--eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCccccc
Q 039497           18 GFDVFSIKSPFVNAPKFH--EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDR   95 (642)
Q Consensus        18 ~~~i~~~~~~~~~~~~~~--~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~   95 (642)
                      ++.|+++...|     ..  ..-+...-......++. +.++.|+++.  .+...|.+.+.+|.....+.. ..+.....
T Consensus        61 ~~~I~r~~~~g-----~~~~~~v~~~~~~~P~GlAvD-~~~~~ly~~d--~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~  131 (619)
T 3s94_A           61 EEAIKRTEFNK-----TESVQNVVVSGLLSPDGLACD-WLGEKLYWTD--SETNRIEVSNLDGSLRKVLFW-QELDQPRA  131 (619)
T ss_dssp             TTEEEEEEC----------CEEEECSSCSCEEEEEEE-TTTTEEEEEE--TTTTEEEEEETTSCSCEEEEC-SSCSCCCC
T ss_pred             CCeEEEEEccC-----CCceEEEEeCCCCCcCeEEEE-ecCCEEEEEe--CCCCEEEEEECCCCCEEEEEe-CCCCCCce
Confidence            45677777766     32  22333332334456677 8888888764  345567887777743222211 11222223


Q ss_pred             ccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEeccc-CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCe
Q 039497           96 PVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTP-YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELN  172 (642)
Q Consensus        96 ~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~  172 (642)
                      .++  .++.|+|+.....        ..|++.++++...+.+.. ........+++|++++|.++...           .
T Consensus       132 Iavdp~~g~ly~tD~g~~--------~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~-----------~  192 (619)
T 3s94_A          132 IALDPSSGFMYWTDWGEV--------PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK-----------L  192 (619)
T ss_dssp             EEEETTTTEEEEEECSSS--------CEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETT-----------T
T ss_pred             EEEecCCCeEEEeccCCC--------CEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCC-----------C
Confidence            344  4678888764321        269999999877666653 33345667899999999888543           2


Q ss_pred             eeEEEEEecCCCceeEeecCCCcc---eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCC-----Cc
Q 039497          173 TDIVVFQESDPNKRVIVCERGGWP---TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPG-----VH  244 (642)
Q Consensus       173 ~~l~~~~~~~g~~~~l~~~~~~~~---~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-----~~  244 (642)
                      ..|+.+++++...+.+.......|   ++..+ .+|++. .  +...|++++..++.       ....+...-     ..
T Consensus       193 ~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td-~--~~~~V~~~d~~tg~-------~~~~i~~~~~~p~~i~  261 (619)
T 3s94_A          193 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTD-W--STHSILACNKYTGE-------GLREIHSDIFSPMDIH  261 (619)
T ss_dssp             CCEEEESSSCCEEC---------CCCEEESSS-EEEEEC-T--TTCSEEEEESSSCC-------CCEECCSCCCCCSEEE
T ss_pred             CeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEec-C--CCCEEEEEECCCCc-------ccEEEecCCCCCcEEE
Confidence            368888887765555543222223   44333 454443 2  33478999987763       222322211     11


Q ss_pred             cccceeecCCcEEEEEEeccCCceeeEEEEEeecC-CCCc-ccCCeecCCC--------CEEEEEEeecCCCCCCcccce
Q 039497          245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLN-PNFH-HYNPFVSANS--------EFIGYHRFRGESTEGQSTIPH  314 (642)
Q Consensus       245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~-~~~~-~~~~~~spDg--------~~l~~~~~~~~~~~~~~~~~~  314 (642)
                      +.++...|.+..-.  .... ..-..+.+...... ..+. .....+.+|+        ..|+|.. ...        +.
T Consensus       262 v~~~~~qp~~~n~C--~~~n-g~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~~~--------i~  329 (619)
T 3s94_A          262 AFSQQRQPNATNPC--GIDN-GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-RTD--------LR  329 (619)
T ss_dssp             ECCGGGSCCCCCTT--TTTG-GGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-SSC--------EE
T ss_pred             EEccccCCCccccc--cCCC-CcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-ccc--------eE
Confidence            11111111110000  0000 00111221110000 0000 0011222332        2344432 111        11


Q ss_pred             EeeccCCCceeEEeeeC----CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEE
Q 039497          315 LEPVASPVKELRMLRLN----GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVI  388 (642)
Q Consensus       315 ~~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~  388 (642)
                      ...++............    ...+.+.+.+.+|++...  ....|+++++++.....+..  -.....+++.+.++.||
T Consensus       330 ~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~--~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY  407 (619)
T 3s94_A          330 RISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD--EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLY  407 (619)
T ss_dssp             EEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred             EEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeC--CCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEE
Confidence            12222221110111111    124567887777887653  35689999999876665554  24567788888888899


Q ss_pred             EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC
Q 039497          389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV  468 (642)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~  468 (642)
                      ++..      ....+.  .++.  +     +.     ..+.+..........+++.|...+|+++.... ...|++.+++
T Consensus       408 ~tD~------~~~~I~--v~~~--~-----G~-----~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~-~~~I~r~~~d  466 (619)
T 3s94_A          408 WTDT------GTDRIE--VTRL--N-----GT-----MRKILISEDLEEPRAIVLDPMVGYMYWTDWGE-IPKIERAALD  466 (619)
T ss_dssp             EEET------TTTEEE--EEET--T-----SC-----SCEEEECTTCCSEEEEEEETTTTEEEEEECSS-SCEEEEEETT
T ss_pred             EEeC------CCCcEE--EEeC--C-----CC-----eEEEEEECCCCCeeeEEEEcCCCcEEEecCCC-CCEEEEEccC
Confidence            8873      244444  4444  3     22     23334332224566789999877888876432 3589999988


Q ss_pred             CCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccce
Q 039497          469 NGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHV  547 (642)
Q Consensus       469 ~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~  547 (642)
                      +...    +.+.. .-.....++++++++.||++.....       .|+.+++++...+.+......        .+..+
T Consensus       467 G~~~----~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~-------~I~~~~~dG~~~~~~~~~~l~--------~P~gl  527 (619)
T 3s94_A          467 GSDR----VVLVNTSLGWPNGLALDYDEGKIYWGDAKTD-------KIEVMNTDGTGRRVLVEDKIP--------HIFGF  527 (619)
T ss_dssp             SCSC----EEEECSSCSCEEEEEEETTTTEEEEEETTTT-------EEEEEESSSCCCEEEEECCCC--------SSCCE
T ss_pred             CCcc----EEEEeCCCCCCeeeEEcccCCEEEEEECCCC-------EEEEEecCCCceEEEeccCCC--------CcEEE
Confidence            4432    44433 2234466799999999999876543       599999998877766543322        23445


Q ss_pred             EEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497          548 CFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW  597 (642)
Q Consensus       548 ~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~  597 (642)
                      +.  ++.+||++....                ..|++++..++..+.+..
T Consensus       528 av--~~~~ly~tD~~~----------------~~I~~~~k~~g~~~~~~~  559 (619)
T 3s94_A          528 TL--LGDYVYWTDWQR----------------RSIERVHKRSAEREVIID  559 (619)
T ss_dssp             EE--ETTEEEEECTTS----------------SCEEEEESSSCCEEEEEC
T ss_pred             EE--ECCEEEEeecCC----------------CeEEEEEcCCCceEEEec
Confidence            55  445888876543                289999988776554443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.38  E-value=1.6e-09  Score=110.39  Aligned_cols=280  Identities=11%  Similarity=-0.003  Sum_probs=152.1

Q ss_pred             ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC-------C
Q 039497          121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER-------G  193 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-------~  193 (642)
                      .++.+++.+++...-...+... .+++||||++|+++......  ..+......|.++++.+.+........       +
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~--~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g  124 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSR--IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG  124 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccc--cccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence            4788898887765322222333 79999999999987532100  000011346789999877654432211       1


Q ss_pred             ---CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee
Q 039497          194 ---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH  270 (642)
Q Consensus       194 ---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~  270 (642)
                         ..+.|+|||+.+|+.+.. ..-.|..+| .+++       ....+...+.   .+.+.|+|+..++           
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~-~~~~v~viD-~t~~-------~~~~~i~~~~---~~~~~~~~~~~~~-----------  181 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFA-AGPAVGLVV-QGGS-------SDDQLLSSPT---CYHIHPGAPSTFY-----------  181 (373)
T ss_pred             CCccceEECCCCCEEEEEecC-CCCeEEEEE-CCCC-------EEeEEcCCCc---eEEEEeCCCceEE-----------
Confidence               245999999877776432 123688888 8773       2223032221   1345566665444           


Q ss_pred             EEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC-CceeEEeeeCCCccEEcCCCCEEEEEec
Q 039497          271 IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP-VKELRMLRLNGSFPSFSPDGGLIVFNHD  349 (642)
Q Consensus       271 i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~  349 (642)
                                       ..++||+.+++.. .++.      . ........ ....    .....+.+++++..++|...
T Consensus       182 -----------------~~~~dg~~~~vd~-~g~~------~-~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~  232 (373)
T 2mad_H          182 -----------------LLCAQGGLAKTDH-AGGA------A-GAGLVGAMLTAAQ----NLLTQPAQANKSGRIVWPVY  232 (373)
T ss_pred             -----------------EEcCCCCEEEEEC-CCcE------E-EEEeccccccCCc----ceeecceeEecCCEEEEEcC
Confidence                             2445666655553 2221      0 00000000 0000    00013467888888888763


Q ss_pred             CCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCEEEEEEcCCCc-ccCCCeEEEEEEEeecCC
Q 039497          350 FELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKHVIYTSTGPIF-QSERATVQIARVSFQLDP  414 (642)
Q Consensus       350 ~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~  414 (642)
                         ...++++|+.+...+.+..              ......+.++||+++|++....... ......-.|+.++.  . 
T Consensus       233 ---~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~--~-  306 (373)
T 2mad_H          233 ---SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG--L-  306 (373)
T ss_pred             ---CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC--C-
Confidence               3589999987664332221              1122336789999988887532000 00011224555555  2 


Q ss_pred             CCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497          415 SDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~  472 (642)
                          +++    ....+...  .....+.|||||++++|..+. +...|.++|+.+++.
T Consensus       307 ----t~~----vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~-~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          307 ----VGQ----TSSQISLG--HDVDAISVAQDGGPDLYALSA-GTEVLHIYDAGAGDQ  353 (373)
T ss_pred             ----CCE----EEEEEECC--CCcCeEEECCCCCeEEEEEcC-CCCeEEEEECCCCCE
Confidence                121    33555433  356789999999966666653 234899999999886

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.36  E-value=6.3e-10  Score=114.00  Aligned_cols=301  Identities=13%  Similarity=0.110  Sum_probs=162.8

Q ss_pred             eCCeEEEEEecCCCc--eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEec-----cCCceeeEE
Q 039497          200 GDSTIYFHRQADDGW--WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRR-----KNRNFRHIE  272 (642)
Q Consensus       200 pdg~~~~~~~~~~g~--~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~-----~~~~~~~i~  272 (642)
                      +|++.+|+.+.....  -.|..+|..+.+       ...++.. +... .+++||||++|+++...     .+.....+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~-------vv~~I~v-G~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs  152 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGR-------ILGMTDG-GFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVE  152 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTE-------EEEEEEE-CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCE-------EEEEEEC-CCCC-ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence            566656665432211  589999998873       3333433 3233 78999999999886531     011233566


Q ss_pred             EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497          273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL  352 (642)
Q Consensus       273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  352 (642)
                      ++|..+..              .+.-.                 .+.+....  ........+.++|||++++.... ..
T Consensus       153 viD~~t~~--------------vv~~I-----------------~v~g~~r~--~~g~~P~~~~~spDGk~lyV~n~-~~  198 (426)
T 3c75_H          153 VFDPVTFL--------------PIADI-----------------ELPDAPRF--LVGTYQWMNALTPDNKNLLFYQF-SP  198 (426)
T ss_dssp             EECTTTCC--------------EEEEE-----------------EETTCCCC--CBSCCGGGSEECTTSSEEEEEEC-SS
T ss_pred             EEECCCCc--------------EEEEE-----------------ECCCcccc--ccCCCcceEEEcCCCCEEEEEec-CC
Confidence            66652211              11100                 00000000  00011236689999998877643 23


Q ss_pred             ceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE----
Q 039497          353 NAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK----  428 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----  428 (642)
                      ...|.++|+.+.+......-...  ....|+|+..++...      .++.+.+.+. .        .+.    ...    
T Consensus       199 ~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~------~dG~~~~V~~-~--------~~~----v~~~~~~  257 (426)
T 3c75_H          199 APAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNC------RDGSLARVDF-A--------DGE----TKVTNTE  257 (426)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEE------TTSSEEEEEC-C--------TTC----CEEEECC
T ss_pred             CCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEc------CCCCEEEEEC-C--------CCc----EEEEeee
Confidence            57899999998876543331111  233444443333321      1333333333 1        111    110    


Q ss_pred             EccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC------C-------CCcccceeEecCC
Q 039497          429 ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD------G-------PWIDTMPSWSPKG  495 (642)
Q Consensus       429 ~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~------~-------~~~~~~~~~spdG  495 (642)
                      .+..........+.+++||+.++|.+..   ..++++|..++..    ..+..      .       +.....+.++|||
T Consensus       258 ~~~v~~~p~~~~~~~~~dg~~~~~~s~~---g~V~ViD~~~~~~----~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg  330 (426)
T 3c75_H          258 VFHTEDELLINHPAFSLRSGRLVWPTYT---GKIFQADLTAEGA----TFRAPIEALTEAERADDWRPGGWQQTAYHRQS  330 (426)
T ss_dssp             CCSCTTSCBCSCCEECTTTCEEEEEBTT---SEEEEEEECSSCE----EECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred             eeccCCCceeeEeeecCCCCEEEEEeCC---CcEEEEeccCCce----EEeeeeeeccccccccccccCCceeeEEcCCC
Confidence            1111110112346789999999998752   3799999875542    22211      0       1112236899999


Q ss_pred             CEEEEEecCCCCC--CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497          496 DLIAFSSNRHNPD--NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP  573 (642)
Q Consensus       496 ~~l~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~  573 (642)
                      +++|+........  ......|.++|+.+.+...-...+.         ....+.|+|||+.++|+.+...         
T Consensus       331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~---------~P~gia~spDg~~~lyv~n~~s---------  392 (426)
T 3c75_H          331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH---------EIDSINVSQDAEPLLYALSAGT---------  392 (426)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---------EECEEEECCSSSCEEEEEETTT---------
T ss_pred             CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC---------CcCeEEEccCCCEEEEEEcCCC---------
Confidence            9988876432100  0124679999999877654332221         3578999999995555555422         


Q ss_pred             CCCCCCCcEEEEEcCCCcee-ec
Q 039497          574 NQFQPYGDLYVVKLDGSGLR-RL  595 (642)
Q Consensus       574 ~~~~~~~~l~~~~~~~~~~~-~l  595 (642)
                            ..|.++|+.+.++. ++
T Consensus       393 ------~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          393 ------QTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ------TEEEEEETTTCCEEEEE
T ss_pred             ------CeEEEEECCCCCEEEEe
Confidence                  28999999887744 44

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.35  E-value=1.9e-07  Score=101.30  Aligned_cols=441  Identities=12%  Similarity=0.109  Sum_probs=241.9

Q ss_pred             eEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEec
Q 039497           58 TIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRL  135 (642)
Q Consensus        58 ~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  135 (642)
                      +|.|+..    .+|..++.++...........+.......+  .++.|+++....         +.|+++++.++....+
T Consensus         8 ~Ll~s~~----~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~---------~~I~r~~~~g~~~~~v   74 (628)
T 4a0p_A            8 FLLFSRR----ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISL---------KTISRAFMNGSALEHV   74 (628)
T ss_dssp             EEEEEET----TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTT---------TEEEEEETTSCSCEEE
T ss_pred             EEEEEeC----CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCC---------CeEEEEECCCCCcEEE
Confidence            6777632    356666555532221111122111112233  567888876542         2699999988766655


Q ss_pred             ccCC-CccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCCc---ceEee-CCeEEEEEec
Q 039497          136 TPYG-VVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGGW---PTWSG-DSTIYFHRQA  210 (642)
Q Consensus       136 t~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~---~~wsp-dg~~~~~~~~  210 (642)
                      .... ......++.+.++.|.++...           ...|++.++++...+.+.......   ++..| +|.+|++...
T Consensus        75 ~~~g~~~P~GlAvD~~~~~LY~tD~~-----------~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g  143 (628)
T 4a0p_A           75 VEFGLDYPEGMAVDWLGKNLYWADTG-----------TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG  143 (628)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETT-----------TTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS
T ss_pred             EeCCCCCcceEEEEeCCCEEEEEECC-----------CCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC
Confidence            4433 335567888888998887543           347889998877665555433333   37777 4567666522


Q ss_pred             CCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCC-------CCc
Q 039497          211 DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNP-------NFH  283 (642)
Q Consensus       211 ~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~-------~~~  283 (642)
                        ....|+++++++.        ..+.+.........+++++++++|+++.....    .|+.+++....       ...
T Consensus       144 --~~~~I~r~~~dG~--------~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~----~I~~~d~dG~~~~v~~~~l~~  209 (628)
T 4a0p_A          144 --GKPKIDRAAMDGS--------ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTN----LIESSNMLGLNREVIADDLPH  209 (628)
T ss_dssp             --SSCEEEEEETTSC--------SCEEEECSCSSEEEEEEETTTTEEEEEETTTT----EEEEEETTSCSCEEEEECCSC
T ss_pred             --CCCEEEEEeCCCC--------ceEEEECCCCCcceEEEccccCEEEEEECCCC----EEEEEcCCCCceEEeeccCCC
Confidence              2459999999887        44444433334456788999999999764332    55666552110       001


Q ss_pred             ccCCeecCCCCEEEEEEeecCC------CCCCcccceEeeccCCCceeEEee-----------------------eC-C-
Q 039497          284 HYNPFVSANSEFIGYHRFRGES------TEGQSTIPHLEPVASPVKELRMLR-----------------------LN-G-  332 (642)
Q Consensus       284 ~~~~~~spDg~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~-~-  332 (642)
                      ..  .+.-++..|++.......      ..+.........+. .+..+....                       .. + 
T Consensus       210 P~--glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~-~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~  286 (628)
T 4a0p_A          210 PF--GLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLD-YVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGG  286 (628)
T ss_dssp             EE--EEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCC-SCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTE
T ss_pred             ce--EEEEECCEEEEecCCCCEEEEEECCCCCceEEEecCCC-CcceeeeeeecccccceEeccCCCCcchhhhcCCCCC
Confidence            11  122233344443211110      00000000000000 000111100                       00 0 


Q ss_pred             ------CccEEcCCCC-------EEEEEecCCCceeEEEEECCCCCe--eEEee--cCCceeeeeecCCCEEEEEEcCCC
Q 039497          333 ------SFPSFSPDGG-------LIVFNHDFELNAGIKIAKSDGSKR--WTLIK--DRTAFYNSWSPTEKHVIYTSTGPI  395 (642)
Q Consensus       333 ------~~~~~spdg~-------~l~~~~~~~~~~~l~~~d~~~~~~--~~l~~--~~~~~~~~~spdg~~l~~~~~~~~  395 (642)
                            ......+|++       .|+|..    ...|..+.++....  ..+..  -..+..+.|.+.++.|+++..   
T Consensus       287 ~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~----~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~---  359 (628)
T 4a0p_A          287 FVCGCPAHYSLNADNRTCSAPTTFLLFSQ----KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDS---  359 (628)
T ss_dssp             EEEECSTTCEECTTSSCEECCSSEEEEEE----TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEET---
T ss_pred             eeEEcCCCcEecccCCcCccccceeeeec----cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEec---
Confidence                  0112334442       344432    24566666654332  11111  244667889998889998873   


Q ss_pred             cccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc-----cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC
Q 039497          396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK-----EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG  470 (642)
Q Consensus       396 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g  470 (642)
                           ..-.|+.+..  +      +..   ....+..     ........+++...++.|+++...  ...|.+.+++ |
T Consensus       360 -----~~~~I~r~~~--~------g~~---~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~--~~~I~v~~~~-G  420 (628)
T 4a0p_A          360 -----RQNMIRKAQE--D------GSQ---GFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEA--TNVINVTRLD-G  420 (628)
T ss_dssp             -----TTTEEEEEET--T------SCS---CEEEEC--------CCCEEEEEEETTTTEEEEEETT--TTEEEEEETT-S
T ss_pred             -----CcceEEEEEc--C------CCC---ceEEEEcccccccccCCcceEEeeccCCeEEEEcCC--CCEEEEEECC-C
Confidence                 2234555555  3      211   1222322     011345678888889999888753  4478888887 5


Q ss_pred             ccccceeeCC-CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE
Q 039497          471 EFNGDIRQLT-DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF  549 (642)
Q Consensus       471 ~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  549 (642)
                      +.   .+.|. ........+++.|...+|+++....     ....|++.++++...+.+......        .+..+++
T Consensus       421 ~~---~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~-----~~~~I~r~~~dG~~~~~l~~~~l~--------~P~gla~  484 (628)
T 4a0p_A          421 RS---VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE-----RSPKIERAALDGTEREVLFFSGLS--------KPIALAL  484 (628)
T ss_dssp             CE---EEEEEECTTCCEEEEEEETTTTEEEEEEEET-----TEEEEEEEETTSCSCEEEECSSCS--------CEEEEEE
T ss_pred             Ce---EEEEEeCCCCceeeEEEecCCCeEEEeecCC-----CCCeEEEEeCCCCCcEEEEeccCC--------CccEEEE
Confidence            53   33443 2223456779999666788876533     123799999999887777653322        4578999


Q ss_pred             cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497          550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW  597 (642)
Q Consensus       550 S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~  597 (642)
                      ++++++||++.....                .|+.++++|...+.+..
T Consensus       485 D~~~~~LYw~D~~~~----------------~I~~~~~dG~~r~~~~~  516 (628)
T 4a0p_A          485 DSRLGKLFWADSDLR----------------RIESSDLSGANRIVLED  516 (628)
T ss_dssp             ETTTTEEEEEETTTT----------------EEEEEETTSCSCEEEEC
T ss_pred             eCCCCEEEEEeCCCC----------------EEEEEeCCCCceEEEEc
Confidence            999999999876432                89999999987666653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.31  E-value=2.6e-09  Score=107.37  Aligned_cols=317  Identities=12%  Similarity=0.077  Sum_probs=169.6

Q ss_pred             ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEe-cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCee
Q 039497           95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTR-LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNT  173 (642)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~  173 (642)
                      .|..++++++.+.....     ...+.++.+|..+++... +..+. .. +.++||||++|+.+.....  .+.......
T Consensus        39 ~~~pd~~~vyV~~~~~~-----~~~~~V~ViD~~t~~v~~~I~vG~-~P-~va~spDG~~lyVan~~~~--r~~~G~~~~  109 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHF-----AAVTQQFVIDGEAGRVIGMIDGGF-LP-NPVVADDGSFIAHASTVFS--RIARGERTD  109 (386)
T ss_dssp             CCCCCTTEEEEEECGGG-----CSSEEEEEEETTTTEEEEEEEECS-SC-EEEECTTSSCEEEEEEEEE--ETTEEEEEE
T ss_pred             ccCCCCCEEEEEcCccc-----CCCCEEEEEECCCCeEEEEEECCC-CC-cEEECCCCCEEEEEccccc--ccccCCCCC
Confidence            34445666655544311     111379999999887654 43332 23 3899999999876642100  000000134


Q ss_pred             eEEEEEecCCCceeEe-ecC------C---CcceEeeCCeEEEEEec-CCCceEEEEEecCCCcccccCCccceeeCCCC
Q 039497          174 DIVVFQESDPNKRVIV-CER------G---GWPTWSGDSTIYFHRQA-DDGWWSIFRVSFPENLEFLGFPIAPTRVTPPG  242 (642)
Q Consensus       174 ~l~~~~~~~g~~~~l~-~~~------~---~~~~wspdg~~~~~~~~-~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~  242 (642)
                      .|.++|..+.+...-. ...      +   ....++|||+.+|+.+. .++  .|..+|..+++       ....+..++
T Consensus       110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~--~VsVID~~t~~-------vv~tI~v~g  180 (386)
T 3sjl_D          110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP--AVGVVDLEGKA-------FKRMLDVPD  180 (386)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC--EEEEEETTTTE-------EEEEEECCS
T ss_pred             EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC--eEEEEECCCCc-------EEEEEECCC
Confidence            6889999998865433 222      1   23599999987777743 234  78889998873       333443222


Q ss_pred             CccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC-C
Q 039497          243 VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS-P  321 (642)
Q Consensus       243 ~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~  321 (642)
                      .    ..+.|.|.+.++                            ..++||+.+++.......     ..  ...... .
T Consensus       181 ~----~~~~P~g~~~~~----------------------------~~~~DG~~~~v~~~~~g~-----v~--~~~~~~~~  221 (386)
T 3sjl_D          181 C----YHIFPTAPDTFF----------------------------MHCRDGSLAKVAFGTEGT-----PE--ITHTEVFH  221 (386)
T ss_dssp             E----EEEEEEETTEEE----------------------------EEETTSCEEEEECCSSSC-----CE--EEECCCCS
T ss_pred             c----ceeecCCCceeE----------------------------EECCCCCEEEEECCCCCe-----EE--Eeecceec
Confidence            1    001111111111                            234455443333211110     00  000000 0


Q ss_pred             CceeEEeeeCCCccEE-cCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCE
Q 039497          322 VKELRMLRLNGSFPSF-SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKH  386 (642)
Q Consensus       322 ~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~  386 (642)
                      ...    ..-...+.| .+|| +++|++.   ...++++|+.+.....+..              .+....+.++|++++
T Consensus       222 ~~~----~~~~~~~~~~~~dG-~~~~vs~---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~  293 (386)
T 3sjl_D          222 PED----EFLINHPAYSQKAG-RLVWPTY---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR  293 (386)
T ss_dssp             CTT----SCBCSCCEEETTTT-EEEEEBT---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             ccc----ccccccceeEcCCC-cEEEEeC---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe
Confidence            000    000113466 4677 4667665   3579999998775432211              223445778999999


Q ss_pred             EEEEEcCC-CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497          387 VIYTSTGP-IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL  465 (642)
Q Consensus       387 l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~  465 (642)
                      ||+..... ........-++|.++.  .     +++    ..+.+.-+.  ....+.+||||+.++|..+. +...|.++
T Consensus       294 lyV~~~~~~~~~hk~~~~~V~viD~--~-----t~k----v~~~i~vg~--~~~~lavs~D~~~~ly~tn~-~~~~VsVi  359 (386)
T 3sjl_D          294 IYLLVDQRDEWRHKTASRFVVVLDA--K-----TGE----RLAKFEMGH--EIDSINVSQDEKPLLYALST-GDKTLYIH  359 (386)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEET--T-----TCC----EEEEEEEEE--EECEEEECSSSSCEEEEEET-TTTEEEEE
T ss_pred             EEEEeccccccccCCCCCEEEEEEC--C-----CCe----EEEEEECCC--CcceEEECCCCCeEEEEEcC-CCCeEEEE
Confidence            99876421 1111123467888877  3     221    344444432  45679999999855566543 34589999


Q ss_pred             ECCCCccccceeeCCCCCCcccceeEecC
Q 039497          466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPK  494 (642)
Q Consensus       466 d~~~g~~~~~~~~l~~~~~~~~~~~~spd  494 (642)
                      |..+++.   ++.+... .....+.+++|
T Consensus       360 D~~t~k~---~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          360 DAESGEE---LRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             ETTTCCE---EEEECCC-CSSCCEEEECC
T ss_pred             ECCCCcE---EEEecCC-CCCceeEECCc
Confidence            9999986   5555544 34456777877

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.30  E-value=1.6e-10  Score=119.14  Aligned_cols=109  Identities=15%  Similarity=0.105  Sum_probs=70.8

Q ss_pred             CCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee---c--CCC---cceEee--------CCeEEE
Q 039497          143 YSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC---E--RGG---WPTWSG--------DSTIYF  206 (642)
Q Consensus       143 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~--~~~---~~~wsp--------dg~~~~  206 (642)
                      ....++|++++||....+.            .|.+|++.+++......   .  +..   .++|+|        ||++++
T Consensus        93 ~~~~~~~~~~~las~~~d~------------~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~la  160 (393)
T 4gq1_A           93 NVNSSPVYSLFLACVCQDN------------TVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIA  160 (393)
T ss_dssp             ----CCEEEEEEEEEETTS------------CEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEE
T ss_pred             ceeecCCCCCEEEEEeCCC------------cEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEE
Confidence            3356788999999988766            68899998886543221   1  122   358988        888888


Q ss_pred             EEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcE-EEEEEeccCCceeeEEEEEeec
Q 039497          207 HRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKR-LAVATRRKNRNFRHIEIYDLTL  278 (642)
Q Consensus       207 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~-l~~~~~~~~~~~~~i~~~d~~~  278 (642)
                      +. ..|++..||.+.  ++.       ....+..+...+..++|+|++.. |+....+     ..+++||+..
T Consensus       161 s~-s~D~tv~~Wd~~--~~~-------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-----~~v~~wd~~t  218 (393)
T 4gq1_A          161 SV-GDDCTLIIWRLT--DEG-------PILAGYPLSSPGISVQFRPSNPNQLIVGERN-----GNIRIFDWTL  218 (393)
T ss_dssp             EE-ETTSEEEEEEEE--TTE-------EEEEEEECSSCEEEEEEETTEEEEEEEEETT-----SEEEEEETTC
T ss_pred             EE-ECCCeEEEEECC--CCc-------eeeeecCCCCCcEEEEECCCCCceEEecCCC-----CEEEEEECCC
Confidence            87 568877776554  331       33444445556778999999875 4443333     3899999843

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.30  E-value=6.2e-11  Score=122.32  Aligned_cols=232  Identities=8%  Similarity=-0.070  Sum_probs=133.7

Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE--ee-----cCCceeeeeec--------CCCEEEEEEcCCCcccCC
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL--IK-----DRTAFYNSWSP--------TEKHVIYTSTGPIFQSER  400 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l--~~-----~~~~~~~~~sp--------dg~~l~~~~~~~~~~~~~  400 (642)
                      .++++++.|+..+. +  ..|.+++++.++....  ..     ...+..+.|+|        ||+.|+..+.       +
T Consensus        96 ~~~~~~~~las~~~-d--~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~-------D  165 (393)
T 4gq1_A           96 SSPVYSLFLACVCQ-D--NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD-------D  165 (393)
T ss_dssp             -CCEEEEEEEEEET-T--SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET-------T
T ss_pred             ecCCCCCEEEEEeC-C--CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC-------C
Confidence            34566666666554 2  5566667666654322  11     45688999998        8888888874       7


Q ss_pred             CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC-
Q 039497          401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL-  479 (642)
Q Consensus       401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l-  479 (642)
                      ..++||++..        ++     ....+..+. ..+..++|+|++..++.+...+  ..|.+||+.+++.   ...+ 
T Consensus       166 ~tv~~Wd~~~--------~~-----~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~d--~~v~~wd~~t~~~---~~~~~  226 (393)
T 4gq1_A          166 CTLIIWRLTD--------EG-----PILAGYPLS-SPGISVQFRPSNPNQLIVGERN--GNIRIFDWTLNLS---AEENS  226 (393)
T ss_dssp             SEEEEEEEET--------TE-----EEEEEEECS-SCEEEEEEETTEEEEEEEEETT--SEEEEEETTCCC---------
T ss_pred             CeEEEEECCC--------Cc-----eeeeecCCC-CCcEEEEECCCCCceEEecCCC--CEEEEEECCCCcc---ccccc
Confidence            8999999976        23     344444444 5677899999987544444433  3788999988764   1111 


Q ss_pred             ------------------------CCCCCcccceeEe-cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497          480 ------------------------TDGPWIDTMPSWS-PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE  534 (642)
Q Consensus       480 ------------------------~~~~~~~~~~~~s-pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~  534 (642)
                                              ..+...+..+.|+ |||+.|+..+.++.        +.+||+..++....... ..
T Consensus       227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~--------i~vwd~~~~~~~~~l~~-~~  297 (393)
T 4gq1_A          227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA--------WLRWNLFANNDYNEISD-ST  297 (393)
T ss_dssp             ----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSE--------EEEEEC--------------
T ss_pred             ccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCC--------EEEEECccCCCCceEee-ec
Confidence                                    1112234455665 89999888776653        88999876543221110 00


Q ss_pred             CCC-----Ccc------cccccceEEcC-CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCC
Q 039497          535 GSG-----DVD------RERINHVCFSA-DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYE  601 (642)
Q Consensus       535 ~~~-----~~~------~~~~~~~~~S~-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~  601 (642)
                      ...     ..+      ........|++ .++.++.+....                +.|++||...++ ...+..+...
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D----------------g~V~lwd~~~~~~~~~~~~~~~~  361 (393)
T 4gq1_A          298 MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH----------------GLIQLINTYEKDSNSIPIQLGMP  361 (393)
T ss_dssp             ------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT----------------TEEEEEETTCTTCCEEEEECSSC
T ss_pred             CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC----------------CEEEEEECCCCcEEEEecCCCCc
Confidence            000     000      00112233433 344444444332                278999988765 3444555567


Q ss_pred             CCCcEEecCCceEEeecCCC
Q 039497          602 NGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       602 ~~~~~~s~dg~~~~~~~~~~  621 (642)
                      +.+++|||||++|++..+.|
T Consensus       362 V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          362 IVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             EEEEEECTTSSEEEEEESSE
T ss_pred             EEEEEEcCCCCEEEEEeCCC
Confidence            78999999999998775544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.28  E-value=1.8e-09  Score=113.02  Aligned_cols=271  Identities=12%  Similarity=0.087  Sum_probs=165.4

Q ss_pred             eeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-cceEeeCCeEEEEEecCCCceEEEEEecCC
Q 039497          146 SVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG-WPTWSGDSTIYFHRQADDGWWSIFRVSFPE  224 (642)
Q Consensus       146 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~wspdg~~~~~~~~~~g~~~l~~~~~~~  224 (642)
                      .+++||++||....++            .|.+|++.+++.......+.. ......++.++++. ..+|...+|  +..+
T Consensus       138 ~~~~d~~~l~~g~~dg------------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg-~~dg~i~vw--d~~~  202 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDN------------TIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG-SSDSTVRVW--DVNT  202 (435)
T ss_dssp             EEECCSSEEEEEESSS------------CEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEE-ETTSCEEEE--ESSS
T ss_pred             EEEECCCEEEEEeCCC------------eEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEE-cCCCeEEEE--ECCC
Confidence            5678999999987665            799999999887666554433 33444588888887 567855554  5555


Q ss_pred             CcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecC
Q 039497          225 NLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGE  304 (642)
Q Consensus       225 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~  304 (642)
                      +.       ....+..+...+..++++  +..|+....++     .+.+||+.....              +...     
T Consensus       203 ~~-------~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg-----~i~vwd~~~~~~--------------~~~~-----  249 (435)
T 1p22_A          203 GE-------MLNTLIHHCEAVLHLRFN--NGMMVTCSKDR-----SIAVWDMASPTD--------------ITLR-----  249 (435)
T ss_dssp             CC-------EEEEECCCCSCEEEEECC--TTEEEEEETTS-----CEEEEECSSSSC--------------CEEE-----
T ss_pred             Cc-------EEEEEcCCCCcEEEEEEc--CCEEEEeeCCC-----cEEEEeCCCCCC--------------ceee-----
Confidence            53       445556665566666664  45677655443     788888732210              0000     


Q ss_pred             CCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeec
Q 039497          305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSP  382 (642)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~sp  382 (642)
                                 ..+.+....         ...++.+++.|+....   ...|.++|+.+++......  ...+..+.|  
T Consensus       250 -----------~~~~~~~~~---------v~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--  304 (435)
T 1p22_A          250 -----------RVLVGHRAA---------VNVVDFDDKYIVSASG---DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--  304 (435)
T ss_dssp             -----------EEECCCSSC---------EEEEEEETTEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEE--
T ss_pred             -----------eEecCCCCc---------EEEEEeCCCEEEEEeC---CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--
Confidence                       000000001         1122337887777654   3678889998877554443  344556666  


Q ss_pred             CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497          383 TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL  462 (642)
Q Consensus       383 dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l  462 (642)
                      +++.|+..+.       ++.+++|++..        +.     ....+..+. ..+..+.|  |+++|+..+.+   ..|
T Consensus       305 ~~~~l~~g~~-------dg~i~iwd~~~--------~~-----~~~~~~~h~-~~v~~~~~--~~~~l~sg~~d---g~i  358 (435)
T 1p22_A          305 RDRLVVSGSS-------DNTIRLWDIEC--------GA-----CLRVLEGHE-ELVRCIRF--DNKRIVSGAYD---GKI  358 (435)
T ss_dssp             ETTEEEEEET-------TSCEEEEETTT--------CC-----EEEEECCCS-SCEEEEEC--CSSEEEEEETT---SCE
T ss_pred             CCCEEEEEeC-------CCeEEEEECCC--------CC-----EEEEEeCCc-CcEEEEEe--cCCEEEEEeCC---CcE
Confidence            5777777763       78899999865        22     455555554 55666666  78888877643   478


Q ss_pred             EEEECCCCccc------cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497          463 FVLDAVNGEFN------GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL  525 (642)
Q Consensus       463 ~~~d~~~g~~~------~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  525 (642)
                      .+||+.+++.+      ..+..+..+...+..++|  ||++|+..+.++.        |.+||+.++..
T Consensus       359 ~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~--------i~iwd~~~~~~  417 (435)
T 1p22_A          359 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT--------ILIWDFLNDPA  417 (435)
T ss_dssp             EEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE--------EEEEC------
T ss_pred             EEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCE--------EEEEECCCCCC
Confidence            99998765410      014556666666777777  7888877766553        99999976544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.28  E-value=1.1e-09  Score=112.09  Aligned_cols=297  Identities=13%  Similarity=0.063  Sum_probs=163.0

Q ss_pred             ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEe-ec-C-----C
Q 039497          121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIV-CE-R-----G  193 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~-~~-~-----~  193 (642)
                      .|..+|+.+++...--..+... ...+||||++|+........  .........|.++|..+.+...-. .. .     +
T Consensus       100 ~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~--~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H          100 QQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFER--IARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEE--TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             eEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccc--cccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            7999999998765433233334 78999999998877531100  000002447899999998865433 22 1     1


Q ss_pred             ---CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee
Q 039497          194 ---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH  270 (642)
Q Consensus       194 ---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~  270 (642)
                         ....++|||+.+|+.+.. ....|..+|..+.+       ....+.-.+.    ..+.|+|++.++           
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~-~~~~VsVID~~t~k-------vv~~I~v~g~----~~~~p~g~~~~v-----------  233 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFS-PAPAVGVVDLEGKT-------FDRMLDVPDC----YHIFPASPTVFY-----------  233 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECS-SSCEEEEEETTTTE-------EEEEEECCSE----EEEEEEETTEEE-----------
T ss_pred             CCcceEEEcCCCCEEEEEecC-CCCeEEEEECCCCe-------EEEEEEcCCc----eeeccCCCcEEE-----------
Confidence               246999999877776432 12378889998873       3333433221    223344443333           


Q ss_pred             EEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEe--eccCCCceeEEeeeCCCccEEcCCCCEEEEEe
Q 039497          271 IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLE--PVASPVKELRMLRLNGSFPSFSPDGGLIVFNH  348 (642)
Q Consensus       271 i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  348 (642)
                                       .+++||+.+++....+.       .....  ..+-...      .....+.++++|++++|..
T Consensus       234 -----------------~~~~dG~~~~V~~~~~~-------v~~~~~~~~~v~~~------p~~~~~~~~~dg~~~~~~s  283 (426)
T 3c75_H          234 -----------------MNCRDGSLARVDFADGE-------TKVTNTEVFHTEDE------LLINHPAFSLRSGRLVWPT  283 (426)
T ss_dssp             -----------------EEETTSSEEEEECCTTC-------CEEEECCCCSCTTS------CBCSCCEECTTTCEEEEEB
T ss_pred             -----------------EEcCCCCEEEEECCCCc-------EEEEeeeeeccCCC------ceeeEeeecCCCCEEEEEe
Confidence                             24455554444421111       00000  0000000      0012346899999999986


Q ss_pred             cCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCEEEEEEcCCC-cccCCCeEEEEEEEeecC
Q 039497          349 DFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKHVIYTSTGPI-FQSERATVQIARVSFQLD  413 (642)
Q Consensus       349 ~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~  413 (642)
                      .   ...++++|..+.....+..              ......+.++||+++||+...... .......-.++.++.  .
T Consensus       284 ~---~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~--~  358 (426)
T 3c75_H          284 Y---TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA--E  358 (426)
T ss_dssp             T---TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET--T
T ss_pred             C---CCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC--C
Confidence            5   2579999987765332211              112234689999999988753100 000012345666665  2


Q ss_pred             CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEec
Q 039497          414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP  493 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp  493 (642)
                           ..+    ....+.-+  .....+.|+|||+.++|..+. +...|.++|+.+++.   ++.+... +.......+|
T Consensus       359 -----T~k----vv~~I~vg--~~P~gia~spDg~~~lyv~n~-~s~~VsVID~~t~kv---v~tI~~v-G~~P~~i~~~  422 (426)
T 3c75_H          359 -----TGE----RINKIELG--HEIDSINVSQDAEPLLYALSA-GTQTLHIYDAATGEE---LRSVDQL-GRGPQIITTH  422 (426)
T ss_dssp             -----TCC----EEEEEEEE--EEECEEEECCSSSCEEEEEET-TTTEEEEEETTTCCE---EEEECCC-SSSCCEEECC
T ss_pred             -----CCe----EEEEEECC--CCcCeEEEccCCCEEEEEEcC-CCCeEEEEECCCCCE---EEEecCC-CCCCcEEEcC
Confidence                 221    44444433  246778999999944455542 234899999999986   5565221 2222345555


Q ss_pred             C
Q 039497          494 K  494 (642)
Q Consensus       494 d  494 (642)
                      |
T Consensus       423 ~  423 (426)
T 3c75_H          423 D  423 (426)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.25  E-value=2.4e-09  Score=111.98  Aligned_cols=268  Identities=12%  Similarity=0.090  Sum_probs=161.6

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      ..+++|+..+++. ..+|...+|  +..++.       ....+..+...+..+++  +++.|+....++     .|.+||
T Consensus       137 ~~~~~d~~~l~~g-~~dg~i~iw--d~~~~~-------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg-----~i~vwd  199 (435)
T 1p22_A          137 YCLQYDDQKIVSG-LRDNTIKIW--DKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDS-----TVRVWD  199 (435)
T ss_dssp             EEEECCSSEEEEE-ESSSCEEEE--ESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTS-----CEEEEE
T ss_pred             EEEEECCCEEEEE-eCCCeEEEE--eCCCCe-------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCC-----eEEEEE
Confidence            3667788888877 457755554  566653       44556666555655555  888888865444     789998


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG  355 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  355 (642)
                      +...              +.+...                   ......+       ..+.|+  ++.++..+.   ...
T Consensus       200 ~~~~--------------~~~~~~-------------------~~h~~~v-------~~l~~~--~~~l~s~s~---dg~  234 (435)
T 1p22_A          200 VNTG--------------EMLNTL-------------------IHHCEAV-------LHLRFN--NGMMVTCSK---DRS  234 (435)
T ss_dssp             SSSC--------------CEEEEE-------------------CCCCSCE-------EEEECC--TTEEEEEET---TSC
T ss_pred             CCCC--------------cEEEEE-------------------cCCCCcE-------EEEEEc--CCEEEEeeC---CCc
Confidence            7322              111110                   0000111       122333  455665543   367


Q ss_pred             EEEEECCCCCeeEE---ee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          356 IKIAKSDGSKRWTL---IK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       356 l~~~d~~~~~~~~l---~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      |.++|+.++.....   ..  ...+..+.|  +++.|+..+.       ++.+.+|++..        +.     ....+
T Consensus       235 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~-------dg~i~vwd~~~--------~~-----~~~~~  292 (435)
T 1p22_A          235 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG-------DRTIKVWNTST--------CE-----FVRTL  292 (435)
T ss_dssp             EEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET-------TSEEEEEETTT--------CC-----EEEEE
T ss_pred             EEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC-------CCeEEEEECCc--------Cc-----EEEEE
Confidence            88888877664422   11  344556666  7888888764       78899998854        22     44555


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      ..+. ..+..+.|  +++.|+..+.   +..|.+||+.+++.   +..+..+...+..+.|  ++++|+..+.++.    
T Consensus       293 ~~~~-~~v~~~~~--~~~~l~~g~~---dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~----  357 (435)
T 1p22_A          293 NGHK-RGIACLQY--RDRLVVSGSS---DNTIRLWDIECGAC---LRVLEGHEELVRCIRF--DNKRIVSGAYDGK----  357 (435)
T ss_dssp             ECCS-SCEEEEEE--ETTEEEEEET---TSCEEEEETTTCCE---EEEECCCSSCEEEEEC--CSSEEEEEETTSC----
T ss_pred             cCCC-CcEEEEEe--CCCEEEEEeC---CCeEEEEECCCCCE---EEEEeCCcCcEEEEEe--cCCEEEEEeCCCc----
Confidence            5444 55555666  5777777763   34799999998886   5667666666666666  7888888887765    


Q ss_pred             CceeEEEEeCCCCce--------EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcE
Q 039497          511 EAFSLYVIKPDGSGL--------RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL  582 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  582 (642)
                          |.+||+.++..        .......+.+       .+..+.|  |++.|+..+.++                 .|
T Consensus       358 ----i~vwd~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~l~~--~~~~l~s~s~Dg-----------------~i  407 (435)
T 1p22_A          358 ----IKVWDLVAALDPRAPAGTLCLRTLVEHSG-------RVFRLQF--DEFQIVSSSHDD-----------------TI  407 (435)
T ss_dssp             ----EEEEEHHHHTSTTSCTTTTEEEEECCCSS-------CCCCEEE--CSSCEEECCSSS-----------------EE
T ss_pred             ----EEEEECCCCCCccccccchheeeccCCCC-------CeEEEEe--CCCEEEEEeCCC-----------------EE
Confidence                99999865431        1112223344       5677778  888877666554                 68


Q ss_pred             EEEEcCCCce
Q 039497          583 YVVKLDGSGL  592 (642)
Q Consensus       583 ~~~~~~~~~~  592 (642)
                      .+|++.....
T Consensus       408 ~iwd~~~~~~  417 (435)
T 1p22_A          408 LIWDFLNDPA  417 (435)
T ss_dssp             EEEC------
T ss_pred             EEEECCCCCC
Confidence            8888776543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.25  E-value=3.4e-09  Score=103.86  Aligned_cols=173  Identities=9%  Similarity=0.009  Sum_probs=104.0

Q ss_pred             ceeEEEEECCC-CCe-eEEee-cCCceeeeeec---CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497          353 NAGIKIAKSDG-SKR-WTLIK-DRTAFYNSWSP---TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD  426 (642)
Q Consensus       353 ~~~l~~~d~~~-~~~-~~l~~-~~~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  426 (642)
                      ...|.++++.. ++. ..+.. ...+..+.|+|   |++.|+-.+.       +..++||++..        +.     .
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~-------D~TIkIWDl~T--------Gk-----~  215 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI-------MNNIVIWNLKT--------GQ-----L  215 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET-------TSEEEEEETTT--------CC-----E
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC-------CCcEEEEECCC--------Cc-----E
Confidence            35566666632 332 22222 55677888999   7788877764       89999999965        33     4


Q ss_pred             eEEccccCC--CCccCcEECCCCCeEEEEeCC---------CCceeEEEEECCCCccccceeeCC---CCCCcccceeEe
Q 039497          427 VKILTKEET--GNNAFPSCSPDGKFLVFRSGR---------SGHKNLFVLDAVNGEFNGDIRQLT---DGPWIDTMPSWS  492 (642)
Q Consensus       427 ~~~l~~~~~--~~~~~~~~SpDg~~l~~~~~~---------~g~~~l~~~d~~~g~~~~~~~~l~---~~~~~~~~~~~s  492 (642)
                      .+.+..+..  ..+...+|||||+.++..+..         .....|.+||..+|+.   +..+.   ...........+
T Consensus       216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~---l~v~~~~~p~Gh~~~~lsg~  292 (356)
T 2w18_A          216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS---VGVMLYCLPPGQAGRFLEGD  292 (356)
T ss_dssp             EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE---EEEEEECCCTTCCCCEEEEE
T ss_pred             EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE---EEEEEeeccCCCcceeEccc
Confidence            566654330  123345899999988654421         2345888899998875   33221   111111122233


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      .+|..++..+.++.        |.+||+.+++...... ++..      .....++|||||++|+..+.++
T Consensus       293 ~sg~~lASgS~DgT--------IkIWDl~tGk~l~tL~-gH~~------~vvs~vafSPDG~~LaSGS~D~  348 (356)
T 2w18_A          293 VKDHCAAAILTSGT--------IAIWDLLLGQCTALLP-PVSD------QHWSFVKWSGTDSHLLAGQKDG  348 (356)
T ss_dssp             EETTEEEEEETTSC--------EEEEETTTCSEEEEEC-CC--------CCCCEEEECSSSSEEEEECTTS
T ss_pred             cCCCEEEEEcCCCc--------EEEEECCCCcEEEEec-CCCC------CeEEEEEECCCCCEEEEEECCC
Confidence            34666776666654        9999999988655433 2222      0223479999999998887665

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.25  E-value=5e-10  Score=110.65  Aligned_cols=226  Identities=10%  Similarity=0.071  Sum_probs=143.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      .+.|+|+++.|+++..  ....|++++.++++...+.....+..+.++|||+ |++..        ...+.  .++.  +
T Consensus        17 gp~w~~~~~~l~~~d~--~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~-l~v~~--------~~~l~--~~d~--~   81 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDI--PAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGG-YVATI--------GTKFC--ALNW--K   81 (297)
T ss_dssp             EEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSS-EEEEE--------TTEEE--EEET--T
T ss_pred             CCeEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEeCCCceEEEEECCCCC-EEEEE--------CCeEE--EEEC--C
Confidence            6799998888888763  3568999999988765554466788899999999 55544        23444  4443  2


Q ss_pred             CCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeCC---------CCceeEEEEECCCCccccceeeCC
Q 039497          414 PSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSGR---------SGHKNLFVLDAVNGEFNGDIRQLT  480 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~---------~g~~~l~~~d~~~g~~~~~~~~l~  480 (642)
                           ++     ..+.+....    ......+.++|||+ |++....         .....||+++.+ |+.    ..+.
T Consensus        82 -----~g-----~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~----~~~~  145 (297)
T 3g4e_A           82 -----EQ-----SAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHV----KKYF  145 (297)
T ss_dssp             -----TT-----EEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCE----EEEE
T ss_pred             -----CC-----cEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCE----EEEe
Confidence                 22     333333221    12345688999998 4454421         234589999876 553    4443


Q ss_pred             CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeC--CCCceE---EeeecC-CCCCCCcccccccceEEcCCCC
Q 039497          481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP--DGSGLR---RIHVAG-PEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       481 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~--~~~~~~---~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      ........++|+|||+.|++......       .|+++++  .++...   .+.... ..+       .+..++++++|+
T Consensus       146 ~~~~~pngi~~spdg~~lyv~~~~~~-------~i~~~~~d~~~G~~~~~~~~~~~~~~~~-------~p~g~~~d~~G~  211 (297)
T 3g4e_A          146 DQVDISNGLDWSLDHKIFYYIDSLSY-------SVDAFDYDLQTGQISNRRSVYKLEKEEQ-------IPDGMCIDAEGK  211 (297)
T ss_dssp             EEESBEEEEEECTTSCEEEEEEGGGT-------EEEEEEECTTTCCEEEEEEEEECCGGGC-------EEEEEEEBTTSC
T ss_pred             eccccccceEEcCCCCEEEEecCCCC-------cEEEEeccCCCCcccCcEEEEECCCCCC-------CCCeeEECCCCC
Confidence            33234467899999999988876432       4888886  455432   222211 112       456789999996


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEe-cCC-ceEEeecCCC
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWH-PGN-QLDLGKLRLE  621 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s-~dg-~~~~~~~~~~  621 (642)
                       |+++...++                .|++++.++++ +..+........+++|+ ||+ .++++....+
T Consensus       212 -lwva~~~~~----------------~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~  264 (297)
T 3g4e_A          212 -LWVACYNGG----------------RVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG  264 (297)
T ss_dssp             -EEEEEETTT----------------EEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred             -EEEEEcCCC----------------EEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence             555544332                79999998555 45555444456789998 887 4567776554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.23  E-value=2e-09  Score=106.14  Aligned_cols=220  Identities=13%  Similarity=0.104  Sum_probs=140.2

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..+.|+|+|+.|+++..  ....|++++.+++ .+.+.. ...+..+.++|||+. +++..      ....+.+|+... 
T Consensus        31 eg~~~d~~g~~l~~~~~--~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l-~v~~~------~~~~i~~~d~~~-   99 (296)
T 3e5z_A           31 EGPVYVPARSAVIFSDV--RQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHL-IACSH------GLRRLERQREPG-   99 (296)
T ss_dssp             EEEEEEGGGTEEEEEEG--GGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCE-EEEET------TTTEEEEECSTT-
T ss_pred             cCCeEeCCCCEEEEEeC--CCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcE-EEEec------CCCeEEEEcCCC-
Confidence            46799999997777663  2468999999988 555444 455778999999984 44442      234555544322 


Q ss_pred             cCCCCCCCCCccccceEEcccc----CCCCccCcEECCCCCeEEEEeC---------------CCCceeEEEEECCCCcc
Q 039497          412 LDPSDDNNREEIPCDVKILTKE----ETGNNAFPSCSPDGKFLVFRSG---------------RSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~SpDg~~l~~~~~---------------~~g~~~l~~~d~~~g~~  472 (642)
                              +     ....+...    .......++++|||+.+ ++..               ..+...||.++.+ |+.
T Consensus       100 --------g-----~~~~~~~~~~~~~~~~~~~i~~d~~G~l~-vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~  164 (296)
T 3e5z_A          100 --------G-----EWESIADSFEGKKLNSPNDVCLAPDGSLW-FSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL  164 (296)
T ss_dssp             --------C-----CEEEEECEETTEECCCCCCEEECTTSCEE-EEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE
T ss_pred             --------C-----cEEEEeeccCCCCCCCCCCEEECCCCCEE-EECCccccccccccccccccCCCcEEEEECCC-CCE
Confidence                    2     33333211    11234568999999744 4321               1123489999987 663


Q ss_pred             ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCce---EEeeecCCCCCCCcccccccceE
Q 039497          473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGL---RRIHVAGPEGSGDVDRERINHVC  548 (642)
Q Consensus       473 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~---~~l~~~~~~~~~~~~~~~~~~~~  548 (642)
                          ..+.........++|+|||+.| +.....       ..|++++++ .+..   ..+. ....+       .+..++
T Consensus       165 ----~~~~~~~~~~~gi~~s~dg~~l-v~~~~~-------~~i~~~~~~~~g~~~~~~~~~-~~~~~-------~p~~i~  224 (296)
T 3e5z_A          165 ----SAPIRDRVKPNGLAFLPSGNLL-VSDTGD-------NATHRYCLNARGETEYQGVHF-TVEPG-------KTDGLR  224 (296)
T ss_dssp             ----EEEECCCSSEEEEEECTTSCEE-EEETTT-------TEEEEEEECSSSCEEEEEEEE-CCSSS-------CCCSEE
T ss_pred             ----EEeecCCCCCccEEECCCCCEE-EEeCCC-------CeEEEEEECCCCcCcCCCeEe-eCCCC-------CCCeEE
Confidence                5555444455778999999988 665543       249999986 4444   2222 22222       456799


Q ss_pred             EcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEE-ecCCce-EEeec
Q 039497          549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAW-HPGNQL-DLGKL  618 (642)
Q Consensus       549 ~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~-s~dg~~-~~~~~  618 (642)
                      +++||+ |+++. .+                 .|++|+.++.....+..... ...++| +||++. +++..
T Consensus       225 ~d~~G~-l~v~~-~~-----------------~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          225 VDAGGL-IWASA-GD-----------------GVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             EBTTSC-EEEEE-TT-----------------EEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEET
T ss_pred             ECCCCC-EEEEc-CC-----------------eEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC
Confidence            999998 44444 22                 79999998776777766555 778899 588764 45543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.21  E-value=9.8e-09  Score=101.14  Aligned_cols=244  Identities=13%  Similarity=0.102  Sum_probs=144.0

Q ss_pred             cceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          195 WPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       195 ~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      .++|+|+|. ++++. ..++  .|++++..++.         ..+..+......++++|||+.++. ...    ...|.+
T Consensus        32 g~~~d~~g~~l~~~~-~~~~--~i~~~~~~~~~---------~~~~~~~~~~~~l~~~~dg~l~v~-~~~----~~~i~~   94 (296)
T 3e5z_A           32 GPVYVPARSAVIFSD-VRQN--RTWAWSDDGQL---------SPEMHPSHHQNGHCLNKQGHLIAC-SHG----LRRLER   94 (296)
T ss_dssp             EEEEEGGGTEEEEEE-GGGT--EEEEEETTSCE---------EEEESSCSSEEEEEECTTCCEEEE-ETT----TTEEEE
T ss_pred             CCeEeCCCCEEEEEe-CCCC--EEEEEECCCCe---------EEEECCCCCcceeeECCCCcEEEE-ecC----CCeEEE
Confidence            479999997 77776 3344  78889887751         333333334566788999985443 221    125666


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec----
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD----  349 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~----  349 (642)
                      ||..              +|+...+.....                 .     ........+.++|+|+.++....    
T Consensus        95 ~d~~--------------~g~~~~~~~~~~-----------------~-----~~~~~~~~i~~d~~G~l~vtd~~~g~~  138 (296)
T 3e5z_A           95 QREP--------------GGEWESIADSFE-----------------G-----KKLNSPNDVCLAPDGSLWFSDPTYGID  138 (296)
T ss_dssp             ECST--------------TCCEEEEECEET-----------------T-----EECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred             EcCC--------------CCcEEEEeeccC-----------------C-----CCCCCCCCEEECCCCCEEEECCccccc
Confidence            5541              232221110000                 0     00011235688999984332110    


Q ss_pred             ----------CCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCC
Q 039497          350 ----------FELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDN  418 (642)
Q Consensus       350 ----------~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  418 (642)
                                ......||.++.+ ++...+.. ......++|+|||+.| ++..      ....+.+|+++.  +     
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~------~~~~i~~~~~~~--~-----  203 (296)
T 3e5z_A          139 KPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDT------GDNATHRYCLNA--R-----  203 (296)
T ss_dssp             CGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEET------TTTEEEEEEECS--S-----
T ss_pred             cccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeC------CCCeEEEEEECC--C-----
Confidence                      1123589999987 55444433 3456789999999988 6663      356777777753  1     


Q ss_pred             CCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeE-ecCCCE
Q 039497          419 NREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW-SPKGDL  497 (642)
Q Consensus       419 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~-spdG~~  497 (642)
                       +. +....+.+ .........+++++||+ |+++.  .  ..|++++.+ |+.   +..+..... ...++| +||++.
T Consensus       204 -g~-~~~~~~~~-~~~~~~p~~i~~d~~G~-l~v~~--~--~~v~~~~~~-g~~---~~~~~~~~~-~~~~~f~~~d~~~  270 (296)
T 3e5z_A          204 -GE-TEYQGVHF-TVEPGKTDGLRVDAGGL-IWASA--G--DGVHVLTPD-GDE---LGRVLTPQT-TSNLCFGGPEGRT  270 (296)
T ss_dssp             -SC-EEEEEEEE-CCSSSCCCSEEEBTTSC-EEEEE--T--TEEEEECTT-SCE---EEEEECSSC-CCEEEEESTTSCE
T ss_pred             -Cc-CcCCCeEe-eCCCCCCCeEEECCCCC-EEEEc--C--CeEEEECCC-CCE---EEEEECCCC-ceeEEEECCCCCE
Confidence             20 00012233 22224556789999997 44444  2  379999987 554   455554444 677889 589999


Q ss_pred             EEEEecCCCCCCCCceeEEEEeCCCCceEEe
Q 039497          498 IAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI  528 (642)
Q Consensus       498 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  528 (642)
                      |+.++...         ||+++++++++++.
T Consensus       271 L~v~t~~~---------l~~~~~~~~~~~~~  292 (296)
T 3e5z_A          271 LYMTVSTE---------FWSIETNVRGLEHH  292 (296)
T ss_dssp             EEEEETTE---------EEEEECSCCBCCC-
T ss_pred             EEEEcCCe---------EEEEEccccccccc
Confidence            99887653         99999988776543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.20  E-value=2.4e-09  Score=107.55  Aligned_cols=231  Identities=11%  Similarity=0.088  Sum_probs=138.9

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+.|+|+|+ |++...  ....|++++.++++.+.+..  ...+..+.|+|||+.+ ++...    .......|+.++. 
T Consensus        49 ~~~~~~~g~-l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~-v~~~~----~~~~~~~i~~~d~-  119 (333)
T 2dg1_A           49 GLNFDRQGQ-LFLLDV--FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLF-VCYLG----DFKSTGGIFAATE-  119 (333)
T ss_dssp             EEEECTTSC-EEEEET--TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEE-EEECT----TSSSCCEEEEECT-
T ss_pred             CcEECCCCC-EEEEEC--CCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEE-EEeCC----CCCCCceEEEEeC-
Confidence            568999998 555442  24689999999888776653  4567889999999744 44321    0001124455544 


Q ss_pred             cCCCCCCCCCccccceE-Eccc-cCCCCccCcEECCCCCeEEEEeCC----CCceeEEEEECCCCccccceeeCCCCCCc
Q 039497          412 LDPSDDNNREEIPCDVK-ILTK-EETGNNAFPSCSPDGKFLVFRSGR----SGHKNLFVLDAVNGEFNGDIRQLTDGPWI  485 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~-~l~~-~~~~~~~~~~~SpDg~~l~~~~~~----~g~~~l~~~d~~~g~~~~~~~~l~~~~~~  485 (642)
                       +     ++     ... .+.. ........+.++|||+.++ ....    .....||+++.++++.    ..+......
T Consensus       120 -~-----~~-----~~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~  183 (333)
T 2dg1_A          120 -N-----GD-----NLQDIIEDLSTAYCIDDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSPDFRTV----TPIIQNISV  183 (333)
T ss_dssp             -T-----SC-----SCEEEECSSSSCCCEEEEEECTTSCEEE-EECCCBTTBCCEEEEEECTTSCCE----EEEEEEESS
T ss_pred             -C-----CC-----EEEEEEccCccCCcccceEECCCCCEEE-EeccccccCCCceEEEEeCCCCEE----EEeecCCCc
Confidence             2     22     222 2221 1113456789999997544 4432    1245899999887663    444332233


Q ss_pred             ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC--CceEEee-----ecCCCCCCCcccccccceEEcCCCCEEEE
Q 039497          486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG--SGLRRIH-----VAGPEGSGDVDRERINHVCFSADGEWLLF  558 (642)
Q Consensus       486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~-----~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~  558 (642)
                      ...++|+|||+.|++.....       ..|+++++++  .....+.     ......       .+..+.+++||+ |++
T Consensus       184 ~~~i~~~~dg~~l~v~~~~~-------~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~-------~~~~i~~d~~G~-l~v  248 (333)
T 2dg1_A          184 ANGIALSTDEKVLWVTETTA-------NRLHRIALEDDGVTIQPFGATIPYYFTGHE-------GPDSCCIDSDDN-LYV  248 (333)
T ss_dssp             EEEEEECTTSSEEEEEEGGG-------TEEEEEEECTTSSSEEEEEEEEEEECCSSS-------EEEEEEEBTTCC-EEE
T ss_pred             ccceEECCCCCEEEEEeCCC-------CeEEEEEecCCCcCcccccceEEEecCCCC-------CCCceEECCCCC-EEE
Confidence            56789999999888876532       2499999853  3332211     111011       346689999998 444


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC------CCCCcEEecCC-ceEEeecCC
Q 039497          559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY------ENGTPAWHPGN-QLDLGKLRL  620 (642)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~------~~~~~~~s~dg-~~~~~~~~~  620 (642)
                      .....                ..|++++.++.....+.....      ....++|+||+ .++++..+.
T Consensus       249 ~~~~~----------------~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          249 AMYGQ----------------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEETT----------------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EEcCC----------------CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            43221                279999987765666554322      46789999997 455665443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.19  E-value=2.5e-09  Score=107.03  Aligned_cols=226  Identities=15%  Similarity=0.143  Sum_probs=141.9

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..+.|+|+++.++++...  ...|++++.++++.+.+.....+..+.|+|||+.++. ..        ..  |+.++.  
T Consensus        52 egp~~~~~~~~l~~~d~~--~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~-~~--------~g--l~~~d~--  116 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNIL--ERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SD--------DG--LFLRDT--  116 (326)
T ss_dssp             EEEEEETTTTEEEEEEGG--GTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ET--------TE--EEEEET--
T ss_pred             cCCeEeCCCCEEEEEECC--CCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEE-EC--------CC--EEEEEC--
Confidence            367999998888887642  4689999999887665544566788899999985554 31        23  455544  


Q ss_pred             CCCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeCC----CCceeEEEEECCCCccccceeeCCCCCC
Q 039497          413 DPSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSGR----SGHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~----~g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                      +     ++     ..+.+....    ......+.++|||+.+ +....    .....||+++  +|+.    +.+.....
T Consensus       117 ~-----~g-----~~~~~~~~~~~~~~~~~~~i~~d~~G~l~-v~~~~~~~~~~~~~l~~~~--~g~~----~~~~~~~~  179 (326)
T 2ghs_A          117 A-----TG-----VLTLHAELESDLPGNRSNDGRMHPSGALW-IGTMGRKAETGAGSIYHVA--KGKV----TKLFADIS  179 (326)
T ss_dssp             T-----TC-----CEEEEECSSTTCTTEEEEEEEECTTSCEE-EEEEETTCCTTCEEEEEEE--TTEE----EEEEEEES
T ss_pred             C-----CC-----cEEEEeeCCCCCCCCCCCCEEECCCCCEE-EEeCCCcCCCCceEEEEEe--CCcE----EEeeCCCc
Confidence            2     23     333333211    0234568899999854 44321    1345899999  4663    44433223


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC--CC-ce---EEeeecC-CCCCCCcccccccceEEcCCCCEEE
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD--GS-GL---RRIHVAG-PEGSGDVDRERINHVCFSADGEWLL  557 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~--~~-~~---~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~  557 (642)
                      ....++|+|||+.|++.....       ..|++++++  ++ ..   +.+.... ...       .+..+.++++|. |+
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~-------~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-------~p~gi~~d~~G~-lw  244 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKV-------NRLMRVPLDARTGLPTGKAEVFIDSTGIKG-------GMDGSVCDAEGH-IW  244 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTT-------CEEEEEEBCTTTCCBSSCCEEEEECTTSSS-------EEEEEEECTTSC-EE
T ss_pred             ccCCeEEcCCCCEEEEEECCC-------CEEEEEEcccccCCcccCceEEEECCCCCC-------CCCeeEECCCCC-EE
Confidence            345789999999998886543       349999986  55 32   2232211 112       345788999997 44


Q ss_pred             EEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEe-cCCc-eEEeecCCC
Q 039497          558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH-PGNQ-LDLGKLRLE  621 (642)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s-~dg~-~~~~~~~~~  621 (642)
                      +.....                ..|++++.++.....+......+..++|+ +|++ ++++....+
T Consensus       245 va~~~~----------------~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          245 NARWGE----------------GAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             EEEETT----------------TEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             EEEeCC----------------CEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence            443222                27999998766566665544456788998 8875 456655544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.18  E-value=2.2e-09  Score=106.40  Aligned_cols=226  Identities=15%  Similarity=0.176  Sum_probs=139.4

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      ..+.|+|+|+.|++...  ....|++++.++ +...+.. ......+.+++||+ |+++...      ...  |+.++. 
T Consensus        48 egp~~~~~g~~l~~~d~--~~~~i~~~~~~g-~~~~~~~~~~~~~gl~~d~dG~-l~v~~~~------~~~--v~~~~~-  114 (305)
T 3dr2_A           48 EGPAWWEAQRTLVWSDL--VGRRVLGWREDG-TVDVLLDATAFTNGNAVDAQQR-LVHCEHG------RRA--ITRSDA-  114 (305)
T ss_dssp             EEEEEEGGGTEEEEEET--TTTEEEEEETTS-CEEEEEESCSCEEEEEECTTSC-EEEEETT------TTE--EEEECT-
T ss_pred             cCCeEeCCCCEEEEEEC--CCCEEEEEeCCC-CEEEEeCCCCccceeeECCCCC-EEEEECC------CCE--EEEECC-
Confidence            36799999998888764  346788899854 4444443 55677899999998 5555421      233  334433 


Q ss_pred             cCCCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeC---------------CCCceeEEEEECCCCcc
Q 039497          412 LDPSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSG---------------RSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~---------------~~g~~~l~~~d~~~g~~  472 (642)
                       +      +     ..+.+....    ......++++|||+ |+++..               ..+...||+++.++|+.
T Consensus       115 -~------g-----~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~  181 (305)
T 3dr2_A          115 -D------G-----QAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL  181 (305)
T ss_dssp             -T------S-----CEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred             -C------C-----CEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence             1      2     233332111    12345689999997 445321               01235899999988874


Q ss_pred             ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE--EeeecCCCCCCCcccccccceEEc
Q 039497          473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR--RIHVAGPEGSGDVDRERINHVCFS  550 (642)
Q Consensus       473 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~S  550 (642)
                          +.+. .......++|+|||+.|++......  ......|++++++++...  .+......+       .+..+.++
T Consensus       182 ----~~~~-~~~~p~gl~~spdg~~lyv~~~~~~--~~~~~~i~~~~~~~~~l~~~~~~~~~~~~-------~pdgi~~d  247 (305)
T 3dr2_A          182 ----QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQ--GHGSVEITAFAWRDGALHDRRHFASVPDG-------LPDGFCVD  247 (305)
T ss_dssp             ----EEEE-EESSEEEEEECTTSSEEEEEECCC-----CCCEEEEEEEETTEEEEEEEEECCSSS-------CCCSEEEC
T ss_pred             ----EEEe-cCCCCcceEEcCCCCEEEEEecCCc--CCCCCEEEEEEecCCCccCCeEEEECCCC-------CCCeEEEC
Confidence                5544 3334467899999999988876421  001246999998765421  111111112       34568999


Q ss_pred             CCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCc-eEEeec
Q 039497          551 ADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQ-LDLGKL  618 (642)
Q Consensus       551 ~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~-~~~~~~  618 (642)
                      ++|+ |++.. .+                 .|++++.++..+..+.... ....++|++|++ ++++..
T Consensus       248 ~~G~-lwv~~-~~-----------------gv~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          248 RGGW-LWSSS-GT-----------------GVCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             TTSC-EEECC-SS-----------------EEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEET
T ss_pred             CCCC-EEEec-CC-----------------cEEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcC
Confidence            9998 55444 21                 6999999887777666544 467889999885 445543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.17  E-value=5.7e-09  Score=104.73  Aligned_cols=250  Identities=15%  Similarity=0.077  Sum_probs=143.4

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeC-CCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT-PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      .++|++||+++++. ..++  .|++++..++        ....+. .....+..++++|||+.++. ..........|++
T Consensus        49 ~~~~~~~g~l~~~~-~~~~--~i~~~d~~~~--------~~~~~~~~~~~~~~~i~~~~dg~l~v~-~~~~~~~~~~i~~  116 (333)
T 2dg1_A           49 GLNFDRQGQLFLLD-VFEG--NIFKINPETK--------EIKRPFVSHKANPAAIKIHKDGRLFVC-YLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEECTTSCEEEEE-TTTC--EEEEECTTTC--------CEEEEEECSSSSEEEEEECTTSCEEEE-ECTTSSSCCEEEE
T ss_pred             CcEECCCCCEEEEE-CCCC--EEEEEeCCCC--------cEEEEeeCCCCCcceEEECCCCcEEEE-eCCCCCCCceEEE
Confidence            47999999987776 3344  8999998887        444443 33445667888999985444 2221111125555


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC---
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF---  350 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---  350 (642)
                      +|...               ..+..               .+... ...       .....+.++|+|+. ++....   
T Consensus       117 ~d~~~---------------~~~~~---------------~~~~~-~~~-------~~~~~i~~d~~g~l-~v~~~~~~~  157 (333)
T 2dg1_A          117 ATENG---------------DNLQD---------------IIEDL-STA-------YCIDDMVFDSKGGF-YFTDFRGYS  157 (333)
T ss_dssp             ECTTS---------------CSCEE---------------EECSS-SSC-------CCEEEEEECTTSCE-EEEECCCBT
T ss_pred             EeCCC---------------CEEEE---------------EEccC-ccC-------CcccceEECCCCCE-EEEeccccc
Confidence            55411               10000               00000 000       00124578999974 443321   


Q ss_pred             -CCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497          351 -ELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK  428 (642)
Q Consensus       351 -~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  428 (642)
                       .....|++++.++++...+.. ......+.|+|||+.|+++..      ....+.+|++..  +      +.    ...
T Consensus       158 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~------~~~~i~~~d~~~--~------g~----~~~  219 (333)
T 2dg1_A          158 TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET------TANRLHRIALED--D------GV----TIQ  219 (333)
T ss_dssp             TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG------GGTEEEEEEECT--T------SS----SEE
T ss_pred             cCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeC------CCCeEEEEEecC--C------Cc----Ccc
Confidence             124689999988777665543 345678899999998888763      245677776643  1      21    111


Q ss_pred             E-----ccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC------cccceeEecCCC
Q 039497          429 I-----LTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW------IDTMPSWSPKGD  496 (642)
Q Consensus       429 ~-----l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~------~~~~~~~spdG~  496 (642)
                      .     ..... ......+.+++||+.++...   +...|++++.+ ++.   +..+.....      ....++|+|||+
T Consensus       220 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~---~~~~v~~~d~~-g~~---~~~~~~~~~~~g~~~~~~~~~~~~dg~  292 (333)
T 2dg1_A          220 PFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY---GQGRVLVFNKR-GYP---IGQILIPGRDEGHMLRSTHPQFIPGTN  292 (333)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE---TTTEEEEECTT-SCE---EEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             cccceEEEecCCCCCCCceEECCCCCEEEEEc---CCCEEEEECCC-CCE---EEEEEcCCCccccccCcceEEECCCCC
Confidence            1     11111 02445689999997544333   22379999985 543   344433221      356789999999


Q ss_pred             EEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          497 LIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       497 ~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      .|++....+.  ......||.+++..
T Consensus       293 ~L~v~~~~g~--~~~~~~l~~~~~~~  316 (333)
T 2dg1_A          293 QLIICSNDIE--MGGGSMLYTVNGFA  316 (333)
T ss_dssp             EEEEEEECGG--GTCCEEEEEEECSS
T ss_pred             EEEEEeCccC--CCCCceEEEEeccc
Confidence            8988876532  11345688888754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.15  E-value=9.4e-09  Score=101.81  Aligned_cols=189  Identities=15%  Similarity=0.119  Sum_probs=114.7

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee------cCCceeeeeecCCCEEEEEEcC---------CCccc
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVIYTSTG---------PIFQS  398 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~---------~~~~~  398 (642)
                      .+.++++|+.++. .  .+...|++++.+ ++.+.+..      ...+..+.++|||+ |+++...         .....
T Consensus        90 gl~~d~dG~l~v~-~--~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~  164 (305)
T 3dr2_A           90 GNAVDAQQRLVHC-E--HGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADP  164 (305)
T ss_dssp             EEEECTTSCEEEE-E--TTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCC
T ss_pred             eeeECCCCCEEEE-E--CCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCcccccccccccc
Confidence            4578999985444 2  234679999987 45454433      12356789999998 5553210         00001


Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC---CceeEEEEECCCCccccc
Q 039497          399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS---GHKNLFVLDAVNGEFNGD  475 (642)
Q Consensus       399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~---g~~~l~~~d~~~g~~~~~  475 (642)
                      ......||.++.  +     ++     +...+. .. .....++|+|||+.|++.....   +...|+++++.++.. ..
T Consensus       165 ~~~~~~v~~~d~--~-----~g-----~~~~~~-~~-~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~  229 (305)
T 3dr2_A          165 ELAHHSVYRLPP--D-----GS-----PLQRMA-DL-DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HD  229 (305)
T ss_dssp             SSSCEEEEEECS--S-----SC-----CCEEEE-EE-SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EE
T ss_pred             ccCCCeEEEEcC--C-----CC-----cEEEEe-cC-CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cC
Confidence            122456787765  2     23     344444 32 4456789999999998876532   125799999875431 00


Q ss_pred             eeeC-CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497          476 IRQL-TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       476 ~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      .+.+ .........+.++++|+ |++....         .|++++.++.....+....          .+..++|++|++
T Consensus       230 ~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~---------gv~~~~~~g~~~~~~~~~~----------~~~~~~f~~d~~  289 (305)
T 3dr2_A          230 RRHFASVPDGLPDGFCVDRGGW-LWSSSGT---------GVCVFDSDGQLLGHIPTPG----------TASNCTFDQAQQ  289 (305)
T ss_dssp             EEEEECCSSSCCCSEEECTTSC-EEECCSS---------EEEEECTTSCEEEEEECSS----------CCCEEEECTTSC
T ss_pred             CeEEEECCCCCCCeEEECCCCC-EEEecCC---------cEEEECCCCCEEEEEECCC----------ceeEEEEeCCCC
Confidence            1222 11223345679999998 5555422         2999999776666655322          246789999999


Q ss_pred             EEEEEEec
Q 039497          555 WLLFTANL  562 (642)
Q Consensus       555 ~l~~~~~~  562 (642)
                      .|++++..
T Consensus       290 ~L~it~~~  297 (305)
T 3dr2_A          290 RLFITGGP  297 (305)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEcCC
Confidence            99988753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.14  E-value=7.7e-09  Score=102.03  Aligned_cols=192  Identities=12%  Similarity=0.053  Sum_probs=119.1

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec------CCceeeeeecCCCEEEEEEcCCCc---ccCCCeEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD------RTAFYNSWSPTEKHVIYTSTGPIF---QSERATVQ  404 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~------~~~~~~~~spdg~~l~~~~~~~~~---~~~~~~~~  404 (642)
                      .+.+++||+ +++..    ...|++++.++++.+.+...      .....+.++|||+ |++.......   ........
T Consensus        58 ~i~~~~dG~-l~v~~----~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~  131 (297)
T 3g4e_A           58 SVALRQSGG-YVATI----GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGA  131 (297)
T ss_dssp             EEEEBTTSS-EEEEE----TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEE
T ss_pred             EEEECCCCC-EEEEE----CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcE
Confidence            567899999 44433    25899999998876666541      2356789999998 5554421100   01124567


Q ss_pred             EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEEC--CCCcccccee---eC
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA--VNGEFNGDIR---QL  479 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~~~~~~---~l  479 (642)
                      ||.++.        .+     ....+.... .....++|+|||+.|+++....  ..|+++++  .+|.. ...+   .+
T Consensus       132 l~~~d~--------~g-----~~~~~~~~~-~~pngi~~spdg~~lyv~~~~~--~~i~~~~~d~~~G~~-~~~~~~~~~  194 (297)
T 3g4e_A          132 LYSLFP--------DH-----HVKKYFDQV-DISNGLDWSLDHKIFYYIDSLS--YSVDAFDYDLQTGQI-SNRRSVYKL  194 (297)
T ss_dssp             EEEECT--------TS-----CEEEEEEEE-SBEEEEEECTTSCEEEEEEGGG--TEEEEEEECTTTCCE-EEEEEEEEC
T ss_pred             EEEEEC--------CC-----CEEEEeecc-ccccceEEcCCCCEEEEecCCC--CcEEEEeccCCCCcc-cCcEEEEEC
Confidence            888866        23     333333322 3456789999999998877533  37888876  45652 0011   12


Q ss_pred             CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEc-CCCCEEEE
Q 039497          480 TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS-ADGEWLLF  558 (642)
Q Consensus       480 ~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S-~Dg~~l~~  558 (642)
                      .........++++++|+ |+++.....       .|+++|.++++........ ..       .+..++|+ ||++.|++
T Consensus       195 ~~~~~~p~g~~~d~~G~-lwva~~~~~-------~v~~~d~~tG~~~~~i~~p-~~-------~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          195 EKEEQIPDGMCIDAEGK-LWVACYNGG-------RVIRLDPVTGKRLQTVKLP-VD-------KTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             CGGGCEEEEEEEBTTSC-EEEEEETTT-------EEEEECTTTCCEEEEEECS-SS-------BEEEEEEESGGGCEEEE
T ss_pred             CCCCCCCCeeEECCCCC-EEEEEcCCC-------EEEEEcCCCceEEEEEECC-CC-------CceEEEEeCCCCCEEEE
Confidence            22223345678999996 555544332       3999999866654433322 12       46789998 99999999


Q ss_pred             EEecCC
Q 039497          559 TANLGA  564 (642)
Q Consensus       559 ~~~~~~  564 (642)
                      ++...+
T Consensus       259 t~~~~~  264 (297)
T 3g4e_A          259 TCARDG  264 (297)
T ss_dssp             EEBCTT
T ss_pred             EcCCcC
Confidence            987654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.12  E-value=9.8e-08  Score=92.39  Aligned_cols=220  Identities=12%  Similarity=0.053  Sum_probs=142.2

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ..+.|+++++.|++...  ....|++++++++....+..  ......++++|+++.|+++..      ....  |+.++.
T Consensus        39 ~gi~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~------~~~~--I~~~~~  108 (267)
T 1npe_A           39 IGLAFDCVDKVVYWTDI--SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS------QLDR--IEVAKM  108 (267)
T ss_dssp             EEEEEETTTTEEEEEET--TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET------TTTE--EEEEET
T ss_pred             EEEEEecCCCEEEEEEC--CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC------CCCE--EEEEEc
Confidence            35689998888888763  45689999998877555543  246778899999998988873      2344  444444


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccce
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMP  489 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~  489 (642)
                        +     +.     ..+.+..........++++|++.+|+++........|+++++++..    .+.+. ........+
T Consensus       109 --~-----g~-----~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~----~~~~~~~~~~~P~gi  172 (267)
T 1npe_A          109 --D-----GT-----QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RRILAQDNLGLPNGL  172 (267)
T ss_dssp             --T-----SC-----SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CEEEECTTCSCEEEE
T ss_pred             --C-----CC-----CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC----cEEEEECCCCCCcEE
Confidence              3     11     2222322111345678999988888888753224589999987433    23332 222344667


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP  569 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~  569 (642)
                      +++|++++||++.....       .|+++++++...+.+.. ...        .+..+  ..|+..|+++....+     
T Consensus       173 a~d~~~~~lyv~d~~~~-------~I~~~~~~g~~~~~~~~-~~~--------~P~gi--~~d~~~lyva~~~~~-----  229 (267)
T 1npe_A          173 TFDAFSSQLCWVDAGTH-------RAECLNPAQPGRRKVLE-GLQ--------YPFAV--TSYGKNLYYTDWKTN-----  229 (267)
T ss_dssp             EEETTTTEEEEEETTTT-------EEEEEETTEEEEEEEEE-CCC--------SEEEE--EEETTEEEEEETTTT-----
T ss_pred             EEcCCCCEEEEEECCCC-------EEEEEecCCCceEEEec-CCC--------CceEE--EEeCCEEEEEECCCC-----
Confidence            99999999998887543       59999998765555443 211        22334  456788888765432     


Q ss_pred             CCCCCCCCCCCcEEEEEcCCCc-eeeccCCC-CCCCCcEEecCCc
Q 039497          570 VSWPNQFQPYGDLYVVKLDGSG-LRRLTWNG-YENGTPAWHPGNQ  612 (642)
Q Consensus       570 ~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~-~~~~~~~~s~dg~  612 (642)
                                 .|++++.++++ +..+.... .....++++||+-
T Consensus       230 -----------~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          230 -----------SVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             -----------EEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             -----------eEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence                       89999998665 45554432 2356778888763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.11  E-value=2e-08  Score=98.38  Aligned_cols=178  Identities=12%  Similarity=0.058  Sum_probs=109.0

Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECC---CCCeEEEEeCCCCceeEEEEECCCCccccc
Q 039497          399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSP---DGKFLVFRSGRSGHKNLFVLDAVNGEFNGD  475 (642)
Q Consensus       399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp---Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~  475 (642)
                      .+..+++|.+..  +     ++     ....+..+. ..+..++|||   |+..|+-.+.   +..|.+||+++|+.   
T Consensus       155 ~d~~V~~~~~s~--d-----G~-----~~~s~~~~~-~~v~~l~fs~~~g~~~~LaSgS~---D~TIkIWDl~TGk~---  215 (356)
T 2w18_A          155 SDQQVEVMTFAE--D-----GG-----GKENQFLMP-PEETILTFAEVQGMQEALLGTTI---MNNIVIWNLKTGQL---  215 (356)
T ss_dssp             TTCEEEEEEECT--T-----SC-----EEEEEEECC-CSSCEEEEEEEETSTTEEEEEET---TSEEEEEETTTCCE---
T ss_pred             CCCcEEEEEECC--C-----Cc-----eeeeeccCC-CceeeEEeeccCCCCceEEEecC---CCcEEEEECCCCcE---
Confidence            478889999865  3     22     333444444 4566778888   7788887773   34899999999986   


Q ss_pred             eeeCCCCCC---cccceeEecCCCEEEEEecCCCC----CCCCceeEEEEeCCCCceEEeee----cCCCCCCCcccccc
Q 039497          476 IRQLTDGPW---IDTMPSWSPKGDLIAFSSNRHNP----DNVEAFSLYVIKPDGSGLRRIHV----AGPEGSGDVDRERI  544 (642)
Q Consensus       476 ~~~l~~~~~---~~~~~~~spdG~~l~~~~~~~~~----~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~~~~~~  544 (642)
                      ++.+..+..   .+...+|||||+.++..+.....    -......|.+||+.+++...+..    .++.+       . 
T Consensus       216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-------~-  287 (356)
T 2w18_A          216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-------R-  287 (356)
T ss_dssp             EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-------C-
T ss_pred             EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-------e-
Confidence            677754322   33445899999988765432100    00134568889998886544321    12222       1 


Q ss_pred             cceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCC-CcEEecCCceEEeecCCC
Q 039497          545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENG-TPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       545 ~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~-~~~~s~dg~~~~~~~~~~  621 (642)
                       .+..+.+|..++..+.++                 .|.+||+..++ +..|..+...+. .++|||||+++++....+
T Consensus       288 -~lsg~~sg~~lASgS~Dg-----------------TIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~  348 (356)
T 2w18_A          288 -FLEGDVKDHCAAAILTSG-----------------TIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDG  348 (356)
T ss_dssp             -EEEEEEETTEEEEEETTS-----------------CEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTS
T ss_pred             -eEccccCCCEEEEEcCCC-----------------cEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCC
Confidence             122233366666555543                 68888998877 455665544444 479999999998875443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.10  E-value=2.3e-08  Score=103.18  Aligned_cols=233  Identities=10%  Similarity=0.016  Sum_probs=143.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      .++|+++|+ |++..  .....|++++++++....+... .... ++|+|+++.|+++..       .....|+.++.  
T Consensus       135 ~la~d~~g~-lyv~d--~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~-------~~~~~I~~~d~--  201 (409)
T 3hrp_A          135 GIAAVGNNT-VLAYQ--RDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGW-------EGTHTVYVYMK--  201 (409)
T ss_dssp             EEEECSTTE-EEEEE--TTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBS-------STTCEEEEEEG--
T ss_pred             EEEEeCCCC-EEEEe--cCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEec-------CCCceEEEEEc--
Confidence            457899997 55544  2456899999998887766552 3334 999999998887763       22225666655  


Q ss_pred             CCCCCCCCCccccceEEc---cc-cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC----CCC-C
Q 039497          413 DPSDDNNREEIPCDVKIL---TK-EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL----TDG-P  483 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l---~~-~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l----~~~-~  483 (642)
                      +     ++.    ....+   .. .. .....++++|++..|++.. .  ...|++++.+++..    ..+    ... .
T Consensus       202 ~-----~~~----~~~~~g~~~~~~~-~~p~~iav~p~~g~lyv~d-~--~~~I~~~d~~~~~~----~~~~~~~~~g~~  264 (409)
T 3hrp_A          202 A-----SGW----APTRIGQLGSTFS-GKIGAVALDETEEWLYFVD-S--NKNFGRFNVKTQEV----TLIKQLELSGSL  264 (409)
T ss_dssp             G-----GTT----CEEEEEECCTTSC-SCCCBCEECTTSSEEEEEC-T--TCEEEEEETTTCCE----EEEEECCCCSCC
T ss_pred             C-----CCc----eeEEeeeccchhc-CCcEEEEEeCCCCeEEEEE-C--CCcEEEEECCCCCE----EEEecccccCCC
Confidence            2     111    22233   11 22 4566789999767787743 3  34899999987763    333    221 1


Q ss_pred             Ccc-c-ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCC-----cccccccceEEcCCCCE
Q 039497          484 WID-T-MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGD-----VDRERINHVCFSADGEW  555 (642)
Q Consensus       484 ~~~-~-~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~-----~~~~~~~~~~~S~Dg~~  555 (642)
                      ... . .++|+|++..||+.....       ..|++++.++. ...+.-.. ..+...     .....+..+++++||+ 
T Consensus       265 ~~~P~~~ia~~p~~g~lyv~d~~~-------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-  335 (409)
T 3hrp_A          265 GTNPGPYLIYYFVDSNFYMSDQNL-------SSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-  335 (409)
T ss_dssp             CCSSCCEEEEETTTTEEEEEETTT-------TEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-
T ss_pred             CCCccccEEEeCCCCEEEEEeCCC-------CEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-
Confidence            222 2 789999877888876544       35999998865 33332211 001000     0011356789999998 


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC---------------CCCCCcEEecCCceEEeecCC
Q 039497          556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG---------------YENGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~---------------~~~~~~~~s~dg~~~~~~~~~  620 (642)
                      ||++....+               ..|+++++..+.+..+....               .....++++++|.+|++....
T Consensus       336 lyvad~~~~---------------~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n  400 (409)
T 3hrp_A          336 FYIVDGFKG---------------YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG  400 (409)
T ss_dssp             EEEEETTTT---------------CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred             EEEEeCCCC---------------CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence            666654122               28999996666666554331               123467899999888876543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.09  E-value=1.3e-08  Score=106.50  Aligned_cols=294  Identities=10%  Similarity=-0.006  Sum_probs=162.1

Q ss_pred             cceEee-----CCeEEEEEecCCCceEEEEEecCCCcccccCCccce--eeCCCCCcccccee-e-cCCcEEEEEEecc-
Q 039497          195 WPTWSG-----DSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPT--RVTPPGVHCFTPAA-F-HDGKRLAVATRRK-  264 (642)
Q Consensus       195 ~~~wsp-----dg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~-S-pdG~~l~~~~~~~-  264 (642)
                      .|..|.     ||+.+|+....++  .|.++++++.+       ...  .+.. +.....+++ + |||++++...+.. 
T Consensus        89 h~~~s~t~g~~DG~~lfVnd~~~~--rVavIdl~t~~-------~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~  158 (595)
T 1fwx_A           89 HVHMSFTEGKYDGRFLFMNDKANT--RVARVRCDVMK-------CDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDET  158 (595)
T ss_dssp             CEEEEEETTEEEEEEEEEEETTTT--EEEEEETTTTE-------EEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred             ccccCCCCCCcCCCEEEEEcCCCC--EEEEEECCCce-------EeeEEeCCC-CCCCcceeeeecCCCcEEEEeccccc
Confidence            356665     8888888643333  78889988862       222  2222 223444555 5 9999987764211 


Q ss_pred             ------------CCceeeEEEEEeecC-------CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCC-ce
Q 039497          265 ------------NRNFRHIEIYDLTLN-------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV-KE  324 (642)
Q Consensus       265 ------------~~~~~~i~~~d~~~~-------~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  324 (642)
                                  ......+.+.|..+.       -.........+|||++++......+..      .++....... ..
T Consensus       159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~------~~i~~~~~~~~d~  232 (595)
T 1fwx_A          159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKG------MTLPEMTAAEMDH  232 (595)
T ss_dssp             ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCC------SSHHHHTCCSEEE
T ss_pred             ccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccC------cchhhccccccce
Confidence                        123345666666211       112345678999999998887654421      0111111111 11


Q ss_pred             eEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC--CCe--eEEeecCCceeeeeecCCCEEEEEEcCCCcccCC
Q 039497          325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG--SKR--WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSER  400 (642)
Q Consensus       325 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~--~~~--~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  400 (642)
                      +..... .....+.++|++...       +.+.++|...  +..  ..+........+.+||||++++....      ..
T Consensus       233 v~V~~~-~~~~~~v~~Gk~~~i-------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~------~s  298 (595)
T 1fwx_A          233 IVVFNI-AEIEKAIAAGDYQEL-------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK------LS  298 (595)
T ss_dssp             EEEEEH-HHHHHHHHHTCSEEE-------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECT------TS
T ss_pred             EEEeec-cceeEeccCCCeeEE-------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCC------CC
Confidence            111111 011234677875443       3488899887  433  23444667889999999999988874      46


Q ss_pred             CeEEEEEEEeec---CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC--------
Q 039497          401 ATVQIARVSFQL---DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN--------  469 (642)
Q Consensus       401 ~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--------  469 (642)
                      ..+.++++....   +++..+.. .   ....+..+  ....+.+|+||| +++.+..-+  .+|.+||+++        
T Consensus       299 ~~VsVid~~~~~~~~~~~l~~~~-~---v~~~v~vG--~gP~h~aF~~dG-~aY~t~~ld--sqV~kwdi~~a~~~~~g~  369 (595)
T 1fwx_A          299 PTVTVLDVTRFDAVFYENADPRS-A---VVAEPELG--LGPLHTAFDGRG-NAYTSLFLD--SQVVKWNIEDAIRAYAGE  369 (595)
T ss_dssp             SBEEEEEGGGHHHHHHSCCCGGG-G---EEECCBCC--SCEEEEEECTTS-EEEEEETTT--TEEEEEEHHHHHHHHHTC
T ss_pred             CeEEEEECcccccccccccCccc-c---eEEEcCCC--CCcceEEECCCC-eEEEEEecC--CcEEEEEhhHhhhhhccc
Confidence            778887775310   00000000 0   11122222  356788999999 665555433  4788899876        


Q ss_pred             --CccccceeeCCCCCCc-----ccceeEecCCCEEEEEecCCCCCC-----CCceeEEEEeCCCCceEEeee
Q 039497          470 --GEFNGDIRQLTDGPWI-----DTMPSWSPKGDLIAFSSNRHNPDN-----VEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       470 --g~~~~~~~~l~~~~~~-----~~~~~~spdG~~l~~~~~~~~~~~-----~~~~~l~~~d~~~~~~~~l~~  530 (642)
                        .+.   +..+.-+...     ......+|||++|+..........     -....--++|+++++.+.+..
T Consensus       370 ~~~~v---i~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d  439 (595)
T 1fwx_A          370 KVDPI---KDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHD  439 (595)
T ss_dssp             SCCCE---EEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEE
T ss_pred             cccee---EEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEE
Confidence              222   3334333211     123367899999988876542110     011122668888888777654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.07  E-value=2.5e-08  Score=99.74  Aligned_cols=189  Identities=15%  Similarity=0.059  Sum_probs=115.2

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .+.|+|||+.++.. .    ..|++++.++++...+...      ..+..+.++|+|+ +++......  .......||.
T Consensus        94 ~i~~~~dg~l~v~~-~----~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~--~~~~~~~l~~  165 (326)
T 2ghs_A           94 ALAKISDSKQLIAS-D----DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRK--AETGAGSIYH  165 (326)
T ss_dssp             EEEEEETTEEEEEE-T----TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETT--CCTTCEEEEE
T ss_pred             EEEEeCCCeEEEEE-C----CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCc--CCCCceEEEE
Confidence            45789999865543 2    3599999988887666431      1356789999998 444442100  0123456676


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC--CC-cccc--ceeeCCCC
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV--NG-EFNG--DIRQLTDG  482 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g-~~~~--~~~~l~~~  482 (642)
                      ++.         +     ....+.... .....++|+|||+.|++....  ...|++++.+  +| +...  ....+...
T Consensus       166 ~~~---------g-----~~~~~~~~~-~~~~~i~~s~dg~~lyv~~~~--~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~  228 (326)
T 2ghs_A          166 VAK---------G-----KVTKLFADI-SIPNSICFSPDGTTGYFVDTK--VNRLMRVPLDARTGLPTGKAEVFIDSTGI  228 (326)
T ss_dssp             EET---------T-----EEEEEEEEE-SSEEEEEECTTSCEEEEEETT--TCEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred             EeC---------C-----cEEEeeCCC-cccCCeEEcCCCCEEEEEECC--CCEEEEEEcccccCCcccCceEEEECCCC
Confidence            653         2     334443322 345578999999999887653  3489999985  66 4200  01122222


Q ss_pred             CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEc-CCCCEEEEEEe
Q 039497          483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS-ADGEWLLFTAN  561 (642)
Q Consensus       483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S-~Dg~~l~~~~~  561 (642)
                      ......+.++++|+ |++.....       ..|++++.++.....+...  ..       .+..++|+ +|++.|+++..
T Consensus       229 ~~~p~gi~~d~~G~-lwva~~~~-------~~v~~~d~~g~~~~~i~~~--~~-------~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          229 KGGMDGSVCDAEGH-IWNARWGE-------GAVDRYDTDGNHIARYEVP--GK-------QTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             SSEEEEEEECTTSC-EEEEEETT-------TEEEEECTTCCEEEEEECS--CS-------BEEEEEEESTTSCEEEEEEB
T ss_pred             CCCCCeeEECCCCC-EEEEEeCC-------CEEEEECCCCCEEEEEECC--CC-------CcEEEEEecCCCCEEEEEec
Confidence            23445678999997 44444222       1399999965544444422  12       46789998 99999988876


Q ss_pred             cCC
Q 039497          562 LGA  564 (642)
Q Consensus       562 ~~~  564 (642)
                      ..+
T Consensus       292 ~~~  294 (326)
T 2ghs_A          292 REH  294 (326)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.02  E-value=1e-07  Score=92.29  Aligned_cols=217  Identities=13%  Similarity=0.105  Sum_probs=135.3

Q ss_pred             CCEEEEEecCCCceeEEEEECCCCCee-----EEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          341 GGLIVFNHDFELNAGIKIAKSDGSKRW-----TLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~~~~~~-----~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      |.+|+|..    ...|+++++++....     .+..  ......++|+|+++.|+++...      ...  |+.++.  +
T Consensus         1 ~~~l~~~~----~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~------~~~--I~~~~~--~   66 (267)
T 1npe_A            1 GTHLLFAQ----TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------EPS--IGRASL--H   66 (267)
T ss_dssp             CEEEEEEE----EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------TTE--EEEEES--S
T ss_pred             CcEEEEEc----CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC------CCE--EEEEec--C
Confidence            44566754    258999999887532     2222  3456789999999999988742      344  444544  3


Q ss_pred             CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEe
Q 039497          414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWS  492 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~s  492 (642)
                           ++     ....+..........++++|+++.|+++...  ...|+++++++...    +.+.. .......++++
T Consensus        67 -----g~-----~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~--~~~I~~~~~~g~~~----~~~~~~~~~~P~~i~vd  130 (267)
T 1npe_A           67 -----GG-----EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDGTQR----RVLFDTGLVNPRGIVTD  130 (267)
T ss_dssp             -----SC-----CCEEEECTTCCCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSC----EEEECSSCSSEEEEEEE
T ss_pred             -----CC-----CcEEEEECCCCCccEEEEEecCCeEEEEECC--CCEEEEEEcCCCCE----EEEEECCCCCccEEEEe
Confidence                 22     2233322211355678999998899888753  34899999874432    33332 22334667999


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCC
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW  572 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~  572 (642)
                      |++.+|+++....     ....|+++++++...+.+..... .       .+..+++++|+++||++....+        
T Consensus       131 ~~~g~lyv~~~~~-----~~~~I~~~~~dg~~~~~~~~~~~-~-------~P~gia~d~~~~~lyv~d~~~~--------  189 (267)
T 1npe_A          131 PVRGNLYWTDWNR-----DNPKIETSHMDGTNRRILAQDNL-G-------LPNGLTFDAFSSQLCWVDAGTH--------  189 (267)
T ss_dssp             TTTTEEEEEECCS-----SSCEEEEEETTSCCCEEEECTTC-S-------CEEEEEEETTTTEEEEEETTTT--------
T ss_pred             eCCCEEEEEECCC-----CCcEEEEEecCCCCcEEEEECCC-C-------CCcEEEEcCCCCEEEEEECCCC--------
Confidence            9888888887542     13469999998876655543222 1       4567899999999988875432        


Q ss_pred             CCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497          573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       573 ~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                              .|++++.++.....+.........++.. ++.++++.
T Consensus       190 --------~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~  225 (267)
T 1npe_A          190 --------RAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTD  225 (267)
T ss_dssp             --------EEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEE
T ss_pred             --------EEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEE
Confidence                    8999999876554443322222334443 34555554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.00  E-value=2.5e-08  Score=100.46  Aligned_cols=280  Identities=8%  Similarity=-0.056  Sum_probs=151.4

Q ss_pred             ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-c--------
Q 039497          121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-E--------  191 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~--------  191 (642)
                      .++.+|+++++...-...+... ++.+||||++|+.........  -+......|.++|+.+++...-.. .        
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~--~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARS--AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTT--TSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEccccccc--ccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            5888899888765432222233 699999999998775321000  001125679999999998654432 2        


Q ss_pred             -CCCcceEeeCCeEEEEEecCCCceEEEE--EecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCce
Q 039497          192 -RGGWPTWSGDSTIYFHRQADDGWWSIFR--VSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNF  268 (642)
Q Consensus       192 -~~~~~~wspdg~~~~~~~~~~g~~~l~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~  268 (642)
                       .....++||||+.+|+.+..+. ..+..  +|..+ .         ..+...+  .  ..+.|+|++.++         
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~-~~v~V~~iD~~t-v---------~~i~v~~--~--~~~~p~g~~~~~---------  179 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSS-AAAGLSVPGASD-D---------QLTKSAS--C--FHIHPGAAATHY---------  179 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSS-CEEEEEETTTEE-E---------EEEECSS--C--CCCEEEETTEEE---------
T ss_pred             CCcceEEEcCCCCEEEEEccCCC-CeEEEEEEchhh-c---------eEEECCC--c--eEEccCCCeEEE---------
Confidence             1235699999987777643211 23444  55443 1         2222111  1  224566665444         


Q ss_pred             eeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe
Q 039497          269 RHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH  348 (642)
Q Consensus       269 ~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  348 (642)
                                         ..++||+.+++........ .. ...+  ... .  .+.   . +..|..++++..++|+.
T Consensus       180 -------------------~~~~dg~~~~vd~~~~~~~-~~-~v~~--~~t-~--~i~---v-g~~P~~~~~~~~~~~vs  229 (368)
T 1mda_H          180 -------------------LGSCPASLAASDLAAAPAA-AG-IVGA--QCT-G--AQN---C-SSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             -------------------CCCCTTSCEEEECCSSCCC-CE-ECCC--CSC-T--TSC---B-CSCCEEETTTTEEEECB
T ss_pred             -------------------EEcCCCCEEEEECcccccc-CC-eEEE--Eee-e--eee---C-CCCccccccCCEEEEEc
Confidence                               2345555544432110000 00 0000  000 0  000   0 11222377888888876


Q ss_pred             cCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCEEEEEEc---CCCcccCCCeEEEEEEEee
Q 039497          349 DFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKHVIYTST---GPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       349 ~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~l~~~~~---~~~~~~~~~~~~l~~~~~~  411 (642)
                      .    ..++++|+.+.....+..              ......+.++||++++++...   +..... .....++++.. 
T Consensus       230 ~----~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~-~~~~~ViD~~t-  303 (368)
T 1mda_H          230 A----SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA-AENTSSVTASV-  303 (368)
T ss_dssp             S----SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC-EEEEEEEESSS-
T ss_pred             C----CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc-CCCEEEEECCC-
Confidence            4    688999987654333221              111222679999999988753   100000 12344444433 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC-CCCceeEEEEECCCCccccceeeCCCC
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG-RSGHKNLFVLDAVNGEFNGDIRQLTDG  482 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~-~~g~~~l~~~d~~~g~~~~~~~~l~~~  482 (642)
                              ++    ....+..+.  ....+.|+|||++++++.. .+  ..|.++|+.+++.   ++.+.-+
T Consensus       304 --------~~----vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~--~~VsVID~~t~kv---v~~I~vg  356 (368)
T 1mda_H          304 --------GQ----TSGPISNGH--DSDAIIAAQDGASDNYANSAGT--EVLDIYDAASDQD---QSSVELD  356 (368)
T ss_dssp             --------CC----EEECCEEEE--EECEEEECCSSSCEEEEEETTT--TEEEEEESSSCEE---EEECCCC
T ss_pred             --------Ce----EEEEEECCC--CcceEEECCCCCEEEEEccCCC--CeEEEEECCCCcE---EEEEECC
Confidence                    21    344444332  4667899999999888876 33  4899999999986   6666544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.00  E-value=6.4e-08  Score=93.66  Aligned_cols=223  Identities=8%  Similarity=0.011  Sum_probs=131.7

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+.++++|+ |+++.. .....|++++..+.....+..  ...+..++++++|+ |+++..       ...  |+.++. 
T Consensus        28 ~i~~~~~g~-l~v~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-------~~~--i~~~d~-   94 (270)
T 1rwi_B           28 GVAVDSAGN-VYVTSE-GMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-------NNR--VVTLAA-   94 (270)
T ss_dssp             EEEECTTCC-EEEEEC-SSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-------TTE--EEEECT-
T ss_pred             ceEECCCCC-EEEEcc-CCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-------CCE--EEEEeC-
Confidence            457899997 444132 234678888876665433322  24567889999998 666551       233  444544 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPS  490 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~  490 (642)
                       +     ++     ....+..........++++|+|+ |+++..  +...|++++..+...    .... ........++
T Consensus        95 -~-----~~-----~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~  156 (270)
T 1rwi_B           95 -G-----SN-----NQTVLPFDGLNYPEGLAVDTQGA-VYVADR--GNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVA  156 (270)
T ss_dssp             -T-----CS-----CCEECCCCSCSSEEEEEECTTCC-EEEEEG--GGTEEEEECTTCCSC----EECCCCSCCSCCCEE
T ss_pred             -C-----Cc-----eEeeeecCCcCCCcceEECCCCC-EEEEEC--CCCEEEEEECCCcee----EeeccccCCCceeEE
Confidence             2     22     22333222113456789999997 555543  234788887654442    2222 2222456789


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      ++|+|+ |++.....       ..|++++.++........... .       .+..++++++| .|+++....       
T Consensus       157 ~~~~g~-l~v~~~~~-------~~i~~~~~~~~~~~~~~~~~~-~-------~p~~i~~d~~g-~l~v~~~~~-------  212 (270)
T 1rwi_B          157 VDNSGN-VYVTDTDN-------NRVVKLEAESNNQVVLPFTDI-T-------APWGIAVDEAG-TVYVTEHNT-------  212 (270)
T ss_dssp             ECTTCC-EEEEEGGG-------TEEEEECTTTCCEEECCCSSC-C-------SEEEEEECTTC-CEEEEETTT-------
T ss_pred             EeCCCC-EEEEECCC-------CEEEEEecCCCceEeecccCC-C-------CceEEEECCCC-CEEEEECCC-------
Confidence            999998 66655432       249999998876554332221 2       45678999999 466555432       


Q ss_pred             CCCCCCCCCCcEEEEEcCCCceeeccCCC-CCCCCcEEecCCceEEeecCC
Q 039497          571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNG-YENGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~dg~~~~~~~~~  620 (642)
                               ..|++++.++.....+.... .....++++++|+++++....
T Consensus       213 ---------~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          213 ---------NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             ---------SCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred             ---------CcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence                     27999998887655544332 345678999999988876543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.98  E-value=6.2e-08  Score=96.94  Aligned_cols=222  Identities=13%  Similarity=0.077  Sum_probs=134.7

Q ss_pred             CCCEEEEEecCCCceeEEEEECCCCCeeE-EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCC
Q 039497          340 DGGLIVFNHDFELNAGIKIAKSDGSKRWT-LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDN  418 (642)
Q Consensus       340 dg~~l~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  418 (642)
                      ++++++....  ....|.++|.++++... +........++++++| +|+++..      ....+.+++...        
T Consensus        52 ~~~~lyv~~~--~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~------~~~~v~~iD~~t--------  114 (328)
T 3dsm_A           52 RDGIGWIVVN--NSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQI------WDYRIFIINPKT--------  114 (328)
T ss_dssp             ETTEEEEEEG--GGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEB------SCSEEEEEETTT--------
T ss_pred             ECCEEEEEEc--CCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEEC------CCCeEEEEECCC--------
Confidence            4566666553  34689999999887644 4335567888999998 6766652      244555544322        


Q ss_pred             CCCccccceEEccccCC----CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecC
Q 039497          419 NREEIPCDVKILTKEET----GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPK  494 (642)
Q Consensus       419 ~~~~~~~~~~~l~~~~~----~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spd  494 (642)
                       +.    ....+.....    .....+++  ++++|+.+... ....|.++|+.+++.   ...+... .....+.++||
T Consensus       115 -~~----~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~-~~~~v~viD~~t~~~---~~~i~~g-~~p~~i~~~~d  182 (328)
T 3dsm_A          115 -YE----ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS-YQNRILKIDTETDKV---VDELTIG-IQPTSLVMDKY  182 (328)
T ss_dssp             -TE----EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT-TCCEEEEEETTTTEE---EEEEECS-SCBCCCEECTT
T ss_pred             -Ce----EEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC-CCCEEEEEECCCCeE---EEEEEcC-CCccceEEcCC
Confidence             21    1222322110    03445666  56777766531 134899999998885   4444433 23457799999


Q ss_pred             CCEEEEEecCCCCC---CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          495 GDLIAFSSNRHNPD---NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       495 G~~l~~~~~~~~~~---~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      |+ +++........   ......|+++|.++++...........       .+..++|+|||++||++..          
T Consensus       183 G~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~-------~p~~la~~~d~~~lyv~~~----------  244 (328)
T 3dsm_A          183 NK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGD-------WPSEVQLNGTRDTLYWINN----------  244 (328)
T ss_dssp             SE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTC-------CCEEEEECTTSCEEEEESS----------
T ss_pred             CC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCC-------CceeEEEecCCCEEEEEcc----------
Confidence            97 55555432100   001256999999888765433221111       3578999999999887642          


Q ss_pred             CCCCCCCCCcEEEEEcCCCceee---ccCCCCCCCCcEEec-CCceEEee
Q 039497          572 WPNQFQPYGDLYVVKLDGSGLRR---LTWNGYENGTPAWHP-GNQLDLGK  617 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~~~~---lt~~~~~~~~~~~s~-dg~~~~~~  617 (642)
                               .|+++|..++++..   +.........++++| +++++++.
T Consensus       245 ---------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          245 ---------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             ---------SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             ---------EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence                     69999998876532   111123446789999 67778876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.95  E-value=8.7e-08  Score=96.48  Aligned_cols=288  Identities=9%  Similarity=-0.051  Sum_probs=149.6

Q ss_pred             EEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEec-----cCCceeeEEEEEeecCCCCcccCCeec
Q 039497          216 SIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRR-----KNRNFRHIEIYDLTLNPNFHHYNPFVS  290 (642)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~-----~~~~~~~i~~~d~~~~~~~~~~~~~~s  290 (642)
                      .|..+|..+++       ....+.... .. .+.+||||++++++...     .+.....+.++|+.+..          
T Consensus        47 ~vsvID~~t~~-------v~~~i~vG~-~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~----------  107 (368)
T 1mda_H           47 ENWVSCAGCGV-------TLGHSLGAF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL----------  107 (368)
T ss_dssp             EEEEEETTTTE-------EEEEEEECT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC----------
T ss_pred             eEEEEECCCCe-------EEEEEeCCC-CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC----------
Confidence            78889998873       333343322 23 68999999999887531     12234578888773221          


Q ss_pred             CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEE--EECCCCCeeE
Q 039497          291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKI--AKSDGSKRWT  368 (642)
Q Consensus       291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~--~d~~~~~~~~  368 (642)
                          .+.-.                 .+.+....  +.......+.+||||++++.... .....+.+  +|+.+  ...
T Consensus       108 ----vv~~I-----------------~v~~~~~~--~~g~~P~~ia~SpDGk~lyVan~-~~~~~v~V~~iD~~t--v~~  161 (368)
T 1mda_H          108 ----PIADI-----------------ELPDAPRF--SVGPRVHIIGNCASSACLLFFLF-GSSAAAGLSVPGASD--DQL  161 (368)
T ss_dssp             ----EEEEE-----------------EETTSCSC--CBSCCTTSEEECTTSSCEEEEEC-SSSCEEEEEETTTEE--EEE
T ss_pred             ----EEEEE-----------------ECCCcccc--ccCCCcceEEEcCCCCEEEEEcc-CCCCeEEEEEEchhh--ceE
Confidence                11110                 01000000  00012246689999998877653 22345666  77766  333


Q ss_pred             EeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCC
Q 039497          369 LIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK  448 (642)
Q Consensus       369 l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~  448 (642)
                      +...+ .  ....|+|+..++...      .++.+.+  ++.  +......+.........+..+.     .+..+++++
T Consensus       162 i~v~~-~--~~~~p~g~~~~~~~~------~dg~~~~--vd~--~~~~~~~~~v~~~~t~~i~vg~-----~P~~~~~~~  223 (368)
T 1mda_H          162 TKSAS-C--FHIHPGAAATHYLGS------CPASLAA--SDL--AAAPAAAGIVGAQCTGAQNCSS-----QAAQANYPG  223 (368)
T ss_dssp             EECSS-C--CCCEEEETTEEECCC------CTTSCEE--EEC--CSSCCCCEECCCCSCTTSCBCS-----CCEEETTTT
T ss_pred             EECCC-c--eEEccCCCeEEEEEc------CCCCEEE--EEC--ccccccCCeEEEEeeeeeeCCC-----CccccccCC
Confidence            32222 1  334577776655432      2344433  333  1000000100000000011111     111378888


Q ss_pred             eEEEEeCCCCceeEEEEECCCCccccceeeCCCC----------CCcccceeEecCCCEEEEEec-C-CCCCCCCceeEE
Q 039497          449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG----------PWIDTMPSWSPKGDLIAFSSN-R-HNPDNVEAFSLY  516 (642)
Q Consensus       449 ~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~----------~~~~~~~~~spdG~~l~~~~~-~-~~~~~~~~~~l~  516 (642)
                      .++|.+.    ..++.+|..+++. +....+.-.          +.....+.++|||+++|+... . +.- -.....+.
T Consensus       224 ~~~~vs~----~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~-~~~~~~~~  297 (368)
T 1mda_H          224 MLVWAVA----SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC-LAAAENTS  297 (368)
T ss_dssp             EEEECBS----SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT-TSCEEEEE
T ss_pred             EEEEEcC----CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcc-cccCCCEE
Confidence            8888886    4799999875431 001111110          011112579999999988754 2 100 00012366


Q ss_pred             EEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe-cCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-e
Q 039497          517 VIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN-LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-R  594 (642)
Q Consensus       517 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~  594 (642)
                      ++|+++.+...-...+.         .+..+.|++||++++++.. ..+                .|.++|+.+.++. +
T Consensus       298 ViD~~t~~vv~~i~vg~---------~p~gi~~s~Dg~~l~va~~~~~~----------------~VsVID~~t~kvv~~  352 (368)
T 1mda_H          298 SVTASVGQTSGPISNGH---------DSDAIIAAQDGASDNYANSAGTE----------------VLDIYDAASDQDQSS  352 (368)
T ss_dssp             EEESSSCCEEECCEEEE---------EECEEEECCSSSCEEEEEETTTT----------------EEEEEESSSCEEEEE
T ss_pred             EEECCCCeEEEEEECCC---------CcceEEECCCCCEEEEEccCCCC----------------eEEEEECCCCcEEEE
Confidence            99998876543222111         3567999999999888876 332                8999999887744 4


Q ss_pred             ccC
Q 039497          595 LTW  597 (642)
Q Consensus       595 lt~  597 (642)
                      +..
T Consensus       353 I~v  355 (368)
T 1mda_H          353 VEL  355 (368)
T ss_dssp             CCC
T ss_pred             EEC
Confidence            443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.92  E-value=9.6e-08  Score=95.56  Aligned_cols=206  Identities=10%  Similarity=0.007  Sum_probs=125.2

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cC------CceeeeeecCCCEEEEEEcCCCcccCCCeEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DR------TAFYNSWSPTEKHVIYTSTGPIFQSERATVQI  405 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l  405 (642)
                      ..+.++++| +++....  ....|+++|+++++...... ..      ....+++  ++++|+++..+     ....+.+
T Consensus        87 ~~i~~~~~g-~lyv~~~--~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~-----~~~~v~v  156 (328)
T 3dsm_A           87 RYIHFLSDE-KAYVTQI--WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS-----YQNRILK  156 (328)
T ss_dssp             EEEEEEETT-EEEEEEB--SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT-----TCCEEEE
T ss_pred             cEEEEeCCC-eEEEEEC--CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC-----CCCEEEE
Confidence            355788898 5554431  24789999999887654333 33      4556666  67778777521     1344555


Q ss_pred             EEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC--------ceeEEEEECCCCcccccee
Q 039497          406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG--------HKNLFVLDAVNGEFNGDIR  477 (642)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g--------~~~l~~~d~~~g~~~~~~~  477 (642)
                      ++...         +.    ....+...  .....+.++|||+ +++......        ...|+++|.++++.   ..
T Consensus       157 iD~~t---------~~----~~~~i~~g--~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v---~~  217 (328)
T 3dsm_A          157 IDTET---------DK----VVDELTIG--IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTV---EK  217 (328)
T ss_dssp             EETTT---------TE----EEEEEECS--SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEE---EE
T ss_pred             EECCC---------Ce----EEEEEEcC--CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeE---EE
Confidence            44432         21    23333332  3456789999997 555543220        25899999998875   33


Q ss_pred             eCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC-CCCCCcccccccceEEcCCCCE
Q 039497          478 QLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP-EGSGDVDRERINHVCFSADGEW  555 (642)
Q Consensus       478 ~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~S~Dg~~  555 (642)
                      .+.-. ......++++|||++|++...  .        |+++|+++++......... ..       .+..++++|++..
T Consensus       218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~--------v~~~d~~t~~~~~~~~~~~~~~-------~p~gi~vdp~~g~  280 (328)
T 3dsm_A          218 QFKFKLGDWPSEVQLNGTRDTLYWINN--D--------IWRMPVEADRVPVRPFLEFRDT-------KYYGLTVNPNNGE  280 (328)
T ss_dssp             EEECCTTCCCEEEEECTTSCEEEEESS--S--------EEEEETTCSSCCSSCSBCCCSS-------CEEEEEECTTTCC
T ss_pred             EEecCCCCCceeEEEecCCCEEEEEcc--E--------EEEEECCCCceeeeeeecCCCC-------ceEEEEEcCCCCe
Confidence            44321 124567899999999888754  2        9999998877531110010 11       4567899998777


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc
Q 039497          556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                      |+++....            |.....|++++.++..+..+.
T Consensus       281 lyva~~~~------------y~~~~~V~v~d~~g~~~~~i~  309 (328)
T 3dsm_A          281 VYVADAID------------YQQQGIVYRYSPQGKLIDEFY  309 (328)
T ss_dssp             EEEEECTT------------SSSEEEEEEECTTCCEEEEEE
T ss_pred             EEEEcccc------------cccCCEEEEECCCCCEEEEEE
Confidence            87775110            001238999999865555554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.91  E-value=3.2e-07  Score=89.61  Aligned_cols=225  Identities=16%  Similarity=0.115  Sum_probs=132.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec-------CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD-------RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~-------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      .++++++|+ +++..  .....|.+++.++.....+...       ..+..+++++.+..|+++...     ....+.+|
T Consensus        34 ~v~~~~~g~-l~v~~--~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-----~~~~i~~~  105 (286)
T 1q7f_A           34 GVAVNAQND-IIVAD--TNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQIY  105 (286)
T ss_dssp             EEEECTTCC-EEEEE--GGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEEE
T ss_pred             eEEECCCCC-EEEEE--CCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-----CCCEEEEE
Confidence            457889997 44432  2246789999886544443221       245577885434456666521     13344444


Q ss_pred             EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCC
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPW  484 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~  484 (642)
                      +  .  +      +.    ....+..........++++|||+ |+++...  ...|++++.+ |+.   +..+..  ...
T Consensus       106 d--~--~------g~----~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~~~~-g~~---~~~~~~~~~~~  164 (286)
T 1q7f_A          106 N--Q--Y------GQ----FVRKFGATILQHPRGVTVDNKGR-IIVVECK--VMRVIIFDQN-GNV---LHKFGCSKHLE  164 (286)
T ss_dssp             C--T--T------SC----EEEEECTTTCSCEEEEEECTTSC-EEEEETT--TTEEEEECTT-SCE---EEEEECTTTCS
T ss_pred             C--C--C------Cc----EEEEecCccCCCceEEEEeCCCC-EEEEECC--CCEEEEEcCC-CCE---EEEeCCCCccC
Confidence            4  3  2      21    33333322213456789999997 5555432  3479999976 443   344432  223


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      ....++++|+|+ |+++....       ..|++++.++.....+...+...       .+..+++++||+ |+++....+
T Consensus       165 ~p~~i~~~~~g~-l~v~~~~~-------~~i~~~~~~g~~~~~~~~~g~~~-------~p~~i~~d~~G~-l~v~~~~~~  228 (286)
T 1q7f_A          165 FPNGVVVNDKQE-IFISDNRA-------HCVKVFNYEGQYLRQIGGEGITN-------YPIGVGINSNGE-ILIADNHNN  228 (286)
T ss_dssp             SEEEEEECSSSE-EEEEEGGG-------TEEEEEETTCCEEEEESCTTTSC-------SEEEEEECTTCC-EEEEECSSS
T ss_pred             CcEEEEECCCCC-EEEEECCC-------CEEEEEcCCCCEEEEEccCCccC-------CCcEEEECCCCC-EEEEeCCCC
Confidence            456789999997 55554432       24999998776555543322112       456789999996 444443221


Q ss_pred             cccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCC--CCCcEEecCCceEEeec
Q 039497          565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYE--NGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~--~~~~~~s~dg~~~~~~~  618 (642)
                                     ..|.+++.++..+..+......  ...++++|||+++++..
T Consensus       229 ---------------~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~  269 (286)
T 1q7f_A          229 ---------------FNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASK  269 (286)
T ss_dssp             ---------------CEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred             ---------------EEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECC
Confidence                           1689999887666666543322  34789999999888853

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.88  E-value=4.9e-08  Score=101.72  Aligned_cols=204  Identities=11%  Similarity=0.000  Sum_probs=122.0

Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC--Ccc-cc-ceEEccccCCCCccCcEECCCCC
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR--EEI-PC-DVKILTKEETGNNAFPSCSPDGK  448 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~-~~-~~~~l~~~~~~~~~~~~~SpDg~  448 (642)
                      .....+++++++..|+....        ..+.++.......... ...  ..+ .. ....+. .. ..+..++|+|||+
T Consensus        37 ~~~n~lavs~~~~~l~~~~~--------dgv~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~-~~v~~l~~spdg~  105 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGA--------SGLQIFPTKNLLIQNK-PGDDPNKIVDKVQGLLVP-MK-FPIHHLALSCDNL  105 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEET--------TEEEEEEHHHHCCCCC-TTCCTTCEEECCCCEEEC-CS-SCEEEEEECTTSC
T ss_pred             CCccEEEEecCCCEEEEECC--------CEEEEEEchHhhhhcc-cccCcccccccCcccccc-CC-CcccEEEEcCCCC
Confidence            34667889999988887652        3366654321000000 000  000 00 001111 12 3577899999999


Q ss_pred             eEEEEe-CCCCceeEEEEECCCC-----ccc---cceeeCCCCCCcccceeEecC-CCEEEEEecCCCCCCCCceeEEEE
Q 039497          449 FLVFRS-GRSGHKNLFVLDAVNG-----EFN---GDIRQLTDGPWIDTMPSWSPK-GDLIAFSSNRHNPDNVEAFSLYVI  518 (642)
Q Consensus       449 ~l~~~~-~~~g~~~l~~~d~~~g-----~~~---~~~~~l~~~~~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~l~~~  518 (642)
                      +|+... .......|.+||+.++     +..   .....+..+...+..++|+|+ ++.|+..+.++.        |++|
T Consensus       106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~--------v~iw  177 (434)
T 2oit_A          106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS--------IAVL  177 (434)
T ss_dssp             EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC--------EEEE
T ss_pred             EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe--------EEEE
Confidence            998631 1124568999998754     110   001223334556788899998 787877777665        9999


Q ss_pred             eCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC
Q 039497          519 KPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN  598 (642)
Q Consensus       519 d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~  598 (642)
                      |+.++.... ....+..       .+..++|||||++|+..+.++                 .|.+|+..+.....+..+
T Consensus       178 D~~~~~~~~-~~~~~~~-------~v~~v~wspdg~~lasgs~dg-----------------~v~iwd~~~~~~~~~~~~  232 (434)
T 2oit_A          178 QVTETVKVC-ATLPSTV-------AVTSVCWSPKGKQLAVGKQNG-----------------TVVQYLPTLQEKKVIPCP  232 (434)
T ss_dssp             EESSSEEEE-EEECGGG-------CEEEEEECTTSSCEEEEETTS-----------------CEEEECTTCCEEEEECCC
T ss_pred             EcCCCccee-eccCCCC-------ceeEEEEcCCCCEEEEEcCCC-----------------cEEEEccCCcccccccCC
Confidence            998774332 2222222       578899999999998887654                 788889885444444332


Q ss_pred             C-------CCCCCcEEecCCceEEeecCC
Q 039497          599 G-------YENGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       599 ~-------~~~~~~~~s~dg~~~~~~~~~  620 (642)
                      .       ..+.++.|++++.++++..+.
T Consensus       233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~  261 (434)
T 2oit_A          233 PFYESDHPVRVLDVLWIGTYVFAIVYAAA  261 (434)
T ss_dssp             TTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred             cccCCCCceeEEEEEEecCceEEEEEccC
Confidence            1       145688999999888655443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.87  E-value=8.8e-08  Score=99.75  Aligned_cols=220  Identities=13%  Similarity=0.071  Sum_probs=125.9

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCC--------C---Ce------eEEeecCCceeeeeecCCCEEEEEEc-CC
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG--------S---KR------WTLIKDRTAFYNSWSPTEKHVIYTST-GP  394 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~--------~---~~------~~l~~~~~~~~~~~spdg~~l~~~~~-~~  394 (642)
                      ..+++++++..|+....    ..+.+++...        .   ..      ..+.....+..+.|+|||++|+++.. . 
T Consensus        40 n~lavs~~~~~l~~~~~----dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg-  114 (434)
T 2oit_A           40 SLLAVSNKYGLVFAGGA----SGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS-  114 (434)
T ss_dssp             BCEEEETTTTEEEEEET----TEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET-
T ss_pred             cEEEEecCCCEEEEECC----CEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc-
Confidence            35578888887776543    1255543211        0   00      11111345889999999999986320 1 


Q ss_pred             CcccCCCeEEEEEEEeecCCCCCCCCC-ccccceEEccccCCCCccCcEECCC-CCeEEEEeCCCCceeEEEEECCCCcc
Q 039497          395 IFQSERATVQIARVSFQLDPSDDNNRE-EIPCDVKILTKEETGNNAFPSCSPD-GKFLVFRSGRSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~  472 (642)
                         ..++.+++|++.....+.   ... +.......+..+. ..+..+.|+|+ ++.|+..+.   +..|.+||+.+++.
T Consensus       115 ---s~d~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~las~s~---Dg~v~iwD~~~~~~  184 (434)
T 2oit_A          115 ---EYGSIIAFFDVRTFSNEA---KQQKRPFAYHKLLKDAG-GMVIDMKWNPTVPSMVAVCLA---DGSIAVLQVTETVK  184 (434)
T ss_dssp             ---TTEEEEEEEEHHHHHCTT---CSSCCCSEEEECCCSGG-GSEEEEEECSSCTTEEEEEET---TSCEEEEEESSSEE
T ss_pred             ---CCCceEEEEEccccccCC---cCCcceeeeeeccCCCC-CceEEEEECCCCCCEEEEEEC---CCeEEEEEcCCCcc
Confidence               346789999986510000   000 0000122223233 56788999998 666666653   34799999987753


Q ss_pred             ccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC
Q 039497          473 NGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD  552 (642)
Q Consensus       473 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D  552 (642)
                         ......+...+..++|+|||++|+..+.++.        |.+||+++.....+.......  ......+..+.|+++
T Consensus       185 ---~~~~~~~~~~v~~v~wspdg~~lasgs~dg~--------v~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~v~w~~~  251 (434)
T 2oit_A          185 ---VCATLPSTVAVTSVCWSPKGKQLAVGKQNGT--------VVQYLPTLQEKKVIPCPPFYE--SDHPVRVLDVLWIGT  251 (434)
T ss_dssp             ---EEEEECGGGCEEEEEECTTSSCEEEEETTSC--------EEEECTTCCEEEEECCCTTCC--TTSCEEEEEEEEEET
T ss_pred             ---eeeccCCCCceeEEEEcCCCCEEEEEcCCCc--------EEEEccCCcccccccCCcccC--CCCceeEEEEEEecC
Confidence               2333333456778899999999999887765        999999843333332211000  000114678899999


Q ss_pred             CCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          553 GEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       553 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                      +.+++......+..+          ....+..|++...
T Consensus       252 ~~~l~~~~~~dg~~~----------~~~~v~i~~l~~~  279 (434)
T 2oit_A          252 YVFAIVYAAADGTLE----------TSPDVVMALLPKK  279 (434)
T ss_dssp             TEEEEEEEETTCCSS----------SCCEEEEEECCCT
T ss_pred             ceEEEEEccCCCccC----------CCCceEEEEeccC
Confidence            988765554432210          1235777777643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.85  E-value=8.5e-07  Score=89.29  Aligned_cols=214  Identities=13%  Similarity=0.057  Sum_probs=139.4

Q ss_pred             EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497          343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE  421 (642)
Q Consensus       343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  421 (642)
                      .|+|..    ...|+.+++++.....+.. ......+.|++.+..|+++...      ..  .|+.++.  +     ++ 
T Consensus        46 ~ll~~~----~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~------~~--~I~r~~~--~-----g~-  105 (349)
T 3v64_C           46 VLLFAN----RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------LD--RILRANL--N-----GS-  105 (349)
T ss_dssp             EEEEEC----BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETT------TT--EEEEEET--T-----SC-
T ss_pred             eeEeec----ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEecc------CC--ceEEEec--C-----CC-
Confidence            456643    3578999998887665554 4457788999999999988732      33  4666665  3     22 


Q ss_pred             ccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccceeEecCCCEEEE
Q 039497          422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~  500 (642)
                          ..+.+..........+++.+.+..|+++...  ...|+++++++...    +.+. ........++++|++..||+
T Consensus       106 ----~~~~~~~~~~~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~----~~l~~~~l~~P~~iavdp~~g~ly~  175 (349)
T 3v64_C          106 ----NVEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHR----KVLLWQSLEKPRAIALHPMEGTIYW  175 (349)
T ss_dssp             ----SCEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCSC----EEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             ----CceEEEeCCCCCccEEEEecCCCeEEEEcCC--CCeEEEEcCCCCce----EEEEeCCCCCcceEEEecCcCeEEE
Confidence                3333322211345568898888889888753  34899999885442    4433 22234466799998888988


Q ss_pred             EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497          501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG  580 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  580 (642)
                      +....      ...|+++++++...+.+...+..        .+..++|++++++||++....                .
T Consensus       176 td~~~------~~~I~r~~~dG~~~~~~~~~~~~--------~PnGla~d~~~~~lY~aD~~~----------------~  225 (349)
T 3v64_C          176 TDWGN------TPRIEASSMDGSGRRIIADTHLF--------WPNGLTIDYAGRRMYWVDAKH----------------H  225 (349)
T ss_dssp             EECSS------SCEEEEEETTSCSCEESCCSSCS--------CEEEEEEETTTTEEEEEETTT----------------T
T ss_pred             eccCC------CCEEEEEeCCCCCcEEEEECCCC--------CcceEEEeCCCCEEEEEECCC----------------C
Confidence            87543      24699999998777666443222        356899999999999987543                2


Q ss_pred             cEEEEEcCCCceeeccCC-CCCCCCcEEecCCceEEee
Q 039497          581 DLYVVKLDGSGLRRLTWN-GYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       581 ~l~~~~~~~~~~~~lt~~-~~~~~~~~~s~dg~~~~~~  617 (642)
                      .|+++++++...+.+... ......+++. ++.+|++.
T Consensus       226 ~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td  262 (349)
T 3v64_C          226 VIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTD  262 (349)
T ss_dssp             EEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEE
T ss_pred             EEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEec
Confidence            899999998765554432 2233455663 34444443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.84  E-value=5.8e-07  Score=91.91  Aligned_cols=214  Identities=13%  Similarity=0.065  Sum_probs=140.7

Q ss_pred             EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497          343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE  421 (642)
Q Consensus       343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  421 (642)
                      +|+|..    ...|+.+++++.....+.. ......+.|.+.+..|+++...      ..  .|+.++.  +     ++ 
T Consensus        89 ~l~~~~----~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~------~~--~I~r~~~--~-----g~-  148 (386)
T 3v65_B           89 VLLFAN----RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT------LD--RILRANL--N-----GS-  148 (386)
T ss_dssp             EEEEEC----BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETT------TT--EEEEEET--T-----SC-
T ss_pred             eeEeec----CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCC------CC--cEEEEec--C-----CC-
Confidence            455533    3679999999887666655 4567789999999999988732      33  4666665  3     22 


Q ss_pred             ccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEE
Q 039497          422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~  500 (642)
                          ..+.+..........+++.+.+..|+++...  ...|+++++++...    +.+.. .......++++|++.+||+
T Consensus       149 ----~~~~~~~~~~~~p~glavd~~~g~lY~~d~~--~~~I~~~~~dg~~~----~~l~~~~l~~P~giavdp~~g~ly~  218 (386)
T 3v65_B          149 ----NVEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHR----KVLLWQSLEKPRAIALHPMEGTIYW  218 (386)
T ss_dssp             ----CEEEEECSSCSCCCCEEEETTTTEEEEEETT--TTEEEECBTTSCSC----EEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             ----CcEEEEeCCCCCccEEEEEeCCCeEEEEcCC--CCeEEEEeCCCCce----EEeecCCCCCCcEEEEEcCCCeEEE
Confidence                3333322221345678999888889888753  34899999885442    44332 2234466799999988988


Q ss_pred             EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497          501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG  580 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  580 (642)
                      +....      ...|+++++++...+.+...+..        .+..++|++++++||++....                .
T Consensus       219 td~~~------~~~I~r~~~dG~~~~~~~~~~~~--------~PnGlavd~~~~~lY~aD~~~----------------~  268 (386)
T 3v65_B          219 TDWGN------TPRIEASSMDGSGRRIIADTHLF--------WPNGLTIDYAGRRMYWVDAKH----------------H  268 (386)
T ss_dssp             EECSS------SCEEEEEETTSCSCEEEECSSCS--------CEEEEEEEGGGTEEEEEETTT----------------T
T ss_pred             eccCC------CCEEEEEeCCCCCcEEEEECCCC--------CeeeEEEeCCCCEEEEEECCC----------------C
Confidence            86543      24699999998877766543322        356799999999999987543                2


Q ss_pred             cEEEEEcCCCceeeccCCC-CCCCCcEEecCCceEEee
Q 039497          581 DLYVVKLDGSGLRRLTWNG-YENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       581 ~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~dg~~~~~~  617 (642)
                      .|+++++++...+.+.... .....+++. ++.+|++.
T Consensus       269 ~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td  305 (386)
T 3v65_B          269 VIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTD  305 (386)
T ss_dssp             EEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEE
T ss_pred             EEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEee
Confidence            8999999987655554322 233455663 33444443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.82  E-value=2.3e-06  Score=86.07  Aligned_cols=219  Identities=12%  Similarity=0.052  Sum_probs=141.8

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+.|++.++.|++...  ....|++++++++....+..  ......+++.+.+..|+++...      ..  .|..++. 
T Consensus        77 ~l~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~------~~--~I~~~~~-  145 (349)
T 3v64_C           77 ALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG------TS--RIEVANL-  145 (349)
T ss_dssp             EEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT------TT--EEEEEET-
T ss_pred             EEEEeccccEEEEEec--cCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCC------CC--eEEEEcC-
Confidence            4578888888888763  34689999999887666544  2346678899888889988742      33  4555555 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPS  490 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~  490 (642)
                       +     +.     ..+.+..........+++.|++..|+++.... ...|+++++++..    .+.+.. .-.....++
T Consensus       146 -d-----G~-----~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~-~~~I~r~~~dG~~----~~~~~~~~~~~PnGla  209 (349)
T 3v64_C          146 -D-----GA-----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSG----RRIIADTHLFWPNGLT  209 (349)
T ss_dssp             -T-----SC-----SCEEEECTTCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCS----CEESCCSSCSCEEEEE
T ss_pred             -C-----CC-----ceEEEEeCCCCCcceEEEecCcCeEEEeccCC-CCEEEEEeCCCCC----cEEEEECCCCCcceEE
Confidence             3     22     22333322213456789999888998886532 3689999998544    355543 223456789


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      ++|+++.||++....       ..|+++++++...+.+..... .       .+..+++  ++..||++....       
T Consensus       210 ~d~~~~~lY~aD~~~-------~~I~~~~~dG~~~~~~~~~~~-~-------~P~giav--~~~~ly~td~~~-------  265 (349)
T 3v64_C          210 IDYAGRRMYWVDAKH-------HVIERANLDGSHRKAVISQGL-P-------HPFAITV--FEDSLYWTDWHT-------  265 (349)
T ss_dssp             EETTTTEEEEEETTT-------TEEEEEETTSCSCEEEECSSC-S-------SEEEEEE--ETTEEEEEETTT-------
T ss_pred             EeCCCCEEEEEECCC-------CEEEEEeCCCCceEEEEeCCC-C-------CceEEEE--ECCEEEEecCCC-------
Confidence            999999999987654       359999999877666654332 2       3456666  456788776543       


Q ss_pred             CCCCCCCCCCcEEEEE-cCCCceeeccCCCCCCCCcEE-ecCCc
Q 039497          571 SWPNQFQPYGDLYVVK-LDGSGLRRLTWNGYENGTPAW-HPGNQ  612 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~-~~~~~~~~lt~~~~~~~~~~~-s~dg~  612 (642)
                               ..|+.++ .++...+.+.........+++ +|..|
T Consensus       266 ---------~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q  300 (349)
T 3v64_C          266 ---------KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQ  300 (349)
T ss_dssp             ---------TEEEEEETTTCCSCEEEECSCSCCCCEEEECGGGS
T ss_pred             ---------CeEEEEEccCCCccEEeccCCCCCceEEEEccccC
Confidence                     2899998 566556655543333445544 44433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.81  E-value=2.2e-06  Score=87.56  Aligned_cols=219  Identities=12%  Similarity=0.045  Sum_probs=141.9

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+.|.+.+++|++...  ....|++++++++....+..  ......+++.+.+..|+++...      ..  .|+.++. 
T Consensus       120 gl~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~------~~--~I~~~~~-  188 (386)
T 3v65_B          120 ALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG------TS--RIEVANL-  188 (386)
T ss_dssp             EEEEETTTTEEEEEET--TTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETT------TT--EEEECBT-
T ss_pred             EEEEecCCCeEEEEeC--CCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCC------CC--eEEEEeC-
Confidence            4688888888888763  35689999999887666544  2345678899888889988742      33  4555555 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPS  490 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~  490 (642)
                       +     +.     ..+.+..........+++.|++.+|+++.... ...|+++++++...    +.+. ..-.....++
T Consensus       189 -d-----g~-----~~~~l~~~~l~~P~giavdp~~g~ly~td~~~-~~~I~r~~~dG~~~----~~~~~~~~~~PnGla  252 (386)
T 3v65_B          189 -D-----GA-----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSGR----RIIADTHLFWPNGLT  252 (386)
T ss_dssp             -T-----SC-----SCEEEECSSCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCSC----EEEECSSCSCEEEEE
T ss_pred             -C-----CC-----ceEEeecCCCCCCcEEEEEcCCCeEEEeccCC-CCEEEEEeCCCCCc----EEEEECCCCCeeeEE
Confidence             3     22     22333322214556789999998998886532 36899999985442    4443 2323456789


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      |+|+++.||++....       ..|+++++++...+.+......        .+..+++  ++..||++....       
T Consensus       253 vd~~~~~lY~aD~~~-------~~I~~~d~dG~~~~~~~~~~~~--------~P~giav--~~~~ly~td~~~-------  308 (386)
T 3v65_B          253 IDYAGRRMYWVDAKH-------HVIERANLDGSHRKAVISQGLP--------HPFAITV--FEDSLYWTDWHT-------  308 (386)
T ss_dssp             EEGGGTEEEEEETTT-------TEEEEECTTSCSCEEEECSSCS--------SEEEEEE--ETTEEEEEETTT-------
T ss_pred             EeCCCCEEEEEECCC-------CEEEEEeCCCCeeEEEEECCCC--------CceEEEE--ECCEEEEeeCCC-------
Confidence            999999999997654       3599999998776666543322        3455666  556788876443       


Q ss_pred             CCCCCCCCCCcEEEEE-cCCCceeeccCCCCCCCCcEE-ecCCc
Q 039497          571 SWPNQFQPYGDLYVVK-LDGSGLRRLTWNGYENGTPAW-HPGNQ  612 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~-~~~~~~~~lt~~~~~~~~~~~-s~dg~  612 (642)
                               ..|++++ .++...+.|.........+++ +|..+
T Consensus       309 ---------~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q  343 (386)
T 3v65_B          309 ---------KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQ  343 (386)
T ss_dssp             ---------TEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGS
T ss_pred             ---------CeEEEEECCCCcceEEEccCCCCCceEEEEchhcC
Confidence                     2899998 556556666544334445544 34433

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.80  E-value=3.8e-07  Score=91.23  Aligned_cols=238  Identities=10%  Similarity=0.076  Sum_probs=134.5

Q ss_pred             ccEEcCCCCEEEEEecCCC----------------------ceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEE
Q 039497          334 FPSFSPDGGLIVFNHDFEL----------------------NAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVI  388 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~----------------------~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~  388 (642)
                      .++++|+|+.++.... +.                      ...|+++|.++++......   -.....++++|+|+ |+
T Consensus        28 ~va~d~~G~l~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~  105 (329)
T 3fvz_A           28 GVALDSKNNLVIFHRG-DHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YW  105 (329)
T ss_dssp             EEEECTTCCEEEEECT-TCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EE
T ss_pred             EEEECCCCCEEEEeCC-CCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EE
Confidence            4578999985544332 21                      1369999998777654433   23567889999999 66


Q ss_pred             EEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc--------cCCCCccCcEECCCCCeEEEEeCCCCce
Q 039497          389 YTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK--------EETGNNAFPSCSPDGKFLVFRSGRSGHK  460 (642)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~SpDg~~l~~~~~~~g~~  460 (642)
                      ++..      ....+.+|+  .  +     +...   ....+..        ........++++|++..|+++... +..
T Consensus       106 v~d~------~~~~v~~~~--~--~-----g~~~---~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~-~~~  166 (329)
T 3fvz_A          106 VTDV------ALHQVFKLD--P--H-----SKEG---PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY-CNS  166 (329)
T ss_dssp             EEET------TTTEEEEEC--T--T-----CSSC---CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS-SCC
T ss_pred             EEEC------CCCEEEEEe--C--C-----CCeE---EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC-CCC
Confidence            6653      244444444  3  2     1100   1222211        111245568999944456555521 234


Q ss_pred             eEEEEECCCCccccceeeCCCCC----------CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-Eee
Q 039497          461 NLFVLDAVNGEFNGDIRQLTDGP----------WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-RIH  529 (642)
Q Consensus       461 ~l~~~d~~~g~~~~~~~~l~~~~----------~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~  529 (642)
                      .|++++.+ |+.   +..+....          .....++++|++..|+++.....       .|.++++++++.. .+.
T Consensus       167 ~I~~~~~~-g~~---~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~-------~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          167 RIVQFSPS-GKF---VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG-------RIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             EEEEECTT-SCE---EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT-------EEEEEETTTCCEEEEEC
T ss_pred             eEEEEcCC-CCE---EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC-------EEEEEECCCCcEEEEEe
Confidence            89999955 654   34443111          12456799999667877766443       5999999855543 333


Q ss_pred             ecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeecc----CCCCCCCCc
Q 039497          530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLT----WNGYENGTP  605 (642)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt----~~~~~~~~~  605 (642)
                      ......       .+..+.|+| | .++..........    .     ....|++++...+++....    ........+
T Consensus       236 ~~~~~~-------~~~~~~~~p-g-~~~~~~g~~~v~~----~-----~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i  297 (329)
T 3fvz_A          236 HASFGR-------NVFAISYIP-G-FLFAVNGKPYFGD----Q-----EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDI  297 (329)
T ss_dssp             CTTTTT-------CEEEEEEET-T-EEEEEECCCCTTC----S-----CCCCEEEEETTTCCEEEEECCSSSCCSSEEEE
T ss_pred             ccccCC-------CcceeeecC-C-EEEEeCCCEEecc----C-----CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEE
Confidence            222222       456788998 3 3333332211000    0     1237999997776654432    222334678


Q ss_pred             EEecCCceEEeecCCC
Q 039497          606 AWHPGNQLDLGKLRLE  621 (642)
Q Consensus       606 ~~s~dg~~~~~~~~~~  621 (642)
                      +++|||.+|++....+
T Consensus       298 a~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          298 VASEDGTVYIGDAHTN  313 (329)
T ss_dssp             EECTTSEEEEEESSSC
T ss_pred             EECCCCCEEEEECCCC
Confidence            9999998888875543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.79  E-value=5e-06  Score=84.16  Aligned_cols=203  Identities=12%  Similarity=0.006  Sum_probs=111.1

Q ss_pred             cEEcCCCCEEEEEec----CCCceeEEEEECCCCCeeEEee-c----CCceeeeeecCCCEEEEEEcC------CCcc--
Q 039497          335 PSFSPDGGLIVFNHD----FELNAGIKIAKSDGSKRWTLIK-D----RTAFYNSWSPTEKHVIYTSTG------PIFQ--  397 (642)
Q Consensus       335 ~~~spdg~~l~~~~~----~~~~~~l~~~d~~~~~~~~l~~-~----~~~~~~~~spdg~~l~~~~~~------~~~~--  397 (642)
                      ...+|||  |+....    .++...|.++|.++.+...... .    .....+.|+|+++.++....+      ..+.  
T Consensus       143 ~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~  220 (462)
T 2ece_A          143 VHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLE  220 (462)
T ss_dssp             EEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTT
T ss_pred             eeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchh
Confidence            3578999  433221    2345789999999888665544 2    223457889999966555321      0010  


Q ss_pred             ----cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCc--EECCCCCeEEEEeC---CCCceeEEEEEC
Q 039497          398 ----SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFP--SCSPDGKFLVFRSG---RSGHKNLFVLDA  467 (642)
Q Consensus       398 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~--~~SpDg~~l~~~~~---~~g~~~l~~~d~  467 (642)
                          .....+.+|++..         +.    ....+..+. .....++  +|+|||++++....   .+...+|+++..
T Consensus       221 ~~~~~~~d~V~v~D~~~---------~k----~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~  287 (462)
T 2ece_A          221 HLKDRYGNRIHFWDLRK---------RK----RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY  287 (462)
T ss_dssp             THHHHSCCEEEEEETTT---------TE----EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred             hhhhccCCEEEEEECCC---------Cc----EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence                1256777777743         21    333443321 0122333  45999999887765   112235655444


Q ss_pred             CCCccccceee--CCCC----------------CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceEEe
Q 039497          468 VNGEFNGDIRQ--LTDG----------------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLRRI  528 (642)
Q Consensus       468 ~~g~~~~~~~~--l~~~----------------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l  528 (642)
                      +.|+.. ..+.  +...                ......+.+||||++||++....       ..|.++|+. .++.+.+
T Consensus       288 d~g~~~-~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-------d~VavfdV~d~~~~~lv  359 (462)
T 2ece_A          288 EDGKWN-AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-------GEVRQYDISNPFKPVLT  359 (462)
T ss_dssp             ETTEEE-EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-------TEEEEEECSSTTSCEEE
T ss_pred             cCCcee-EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-------CEEEEEEecCCCCcEEE
Confidence            344320 0111  1110                12345678999999988877644       358888874 3334433


Q ss_pred             eecCCCCCC--------CcccccccceEEcCCCCEEEEEE
Q 039497          529 HVAGPEGSG--------DVDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       529 ~~~~~~~~~--------~~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      ..-...+..        ..-...+..+.+||||++|+++.
T Consensus       360 ~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          360 GKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            221111100        00000256789999999998887

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.78  E-value=2.5e-07  Score=96.99  Aligned_cols=237  Identities=13%  Similarity=0.065  Sum_probs=138.0

Q ss_pred             ccEEcC-----CCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeee-e-cCCCEEEEEEcCC---------
Q 039497          334 FPSFSP-----DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSW-S-PTEKHVIYTSTGP---------  394 (642)
Q Consensus       334 ~~~~sp-----dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~-s-pdg~~l~~~~~~~---------  394 (642)
                      ++..|.     ||++++...  .....|.++|+++.+...+..   ......+.+ + ||+++++......         
T Consensus        89 h~~~s~t~g~~DG~~lfVnd--~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~  166 (595)
T 1fwx_A           89 HVHMSFTEGKYDGRFLFMND--KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN  166 (595)
T ss_dssp             CEEEEEETTEEEEEEEEEEE--TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred             ccccCCCCCCcCCCEEEEEc--CCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence            345555     888776644  345789999999988666544   355677776 5 9999997775321         


Q ss_pred             CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCc---------------
Q 039497          395 IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGH---------------  459 (642)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~---------------  459 (642)
                      ++..+...-.+-.++.  +     +. +   ...++.-.  +....+.+||||++++.++.....               
T Consensus       167 l~~~~~~~~~vtvID~--~-----t~-~---v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v  233 (595)
T 1fwx_A          167 MEDVANYVNVFTAVDA--D-----KW-E---VAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI  233 (595)
T ss_dssp             TTCGGGEEEEEEEEET--T-----TT-E---EEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred             cccccccCceEEEEEC--C-----CC-e---EEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence            1111122334445555  2     11 1   23333322  245668899999999988854311               


Q ss_pred             --------------------eeEEEEECCC--CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEE
Q 039497          460 --------------------KNLFVLDAVN--GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYV  517 (642)
Q Consensus       460 --------------------~~l~~~d~~~--g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~  517 (642)
                                          ..+.++|..+  ++.  .+..+... .....+.+||||++++.+....       ..|.+
T Consensus       234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~--~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s-------~~VsV  303 (595)
T 1fwx_A          234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSL--FTRYIPIA-NNPHGCNMAPDKKHLCVAGKLS-------PTVTV  303 (595)
T ss_dssp             EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCS--SEEEEEEE-SSCCCEEECTTSSEEEEECTTS-------SBEEE
T ss_pred             EEeeccceeEeccCCCeeEECcEEEEeCcccCCce--eEEEEecC-CCceEEEEcCCCCEEEEeCCCC-------CeEEE
Confidence                                1366777665  321  01233222 2345689999999988877644       35999


Q ss_pred             EeCCCCce----------EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc
Q 039497          518 IKPDGSGL----------RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL  587 (642)
Q Consensus       518 ~d~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  587 (642)
                      +|+++.+.          ..+.... .+      ..+.+.+|++|| ++|.+ ..-.               .+|..|++
T Consensus       304 id~~~~~~~~~~~l~~~~~v~~~v~-vG------~gP~h~aF~~dG-~aY~t-~~ld---------------sqV~kwdi  359 (595)
T 1fwx_A          304 LDVTRFDAVFYENADPRSAVVAEPE-LG------LGPLHTAFDGRG-NAYTS-LFLD---------------SQVVKWNI  359 (595)
T ss_dssp             EEGGGHHHHHHSCCCGGGGEEECCB-CC------SCEEEEEECTTS-EEEEE-ETTT---------------TEEEEEEH
T ss_pred             EECcccccccccccCcccceEEEcC-CC------CCcceEEECCCC-eEEEE-EecC---------------CcEEEEEh
Confidence            99875321          1111111 11      146789999999 65444 4332               27888887


Q ss_pred             CC----------Cc-eeeccCCCCC------CCCcEEecCCceEEeecCC
Q 039497          588 DG----------SG-LRRLTWNGYE------NGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       588 ~~----------~~-~~~lt~~~~~------~~~~~~s~dg~~~~~~~~~  620 (642)
                      +.          .+ +..+..+ +.      ......+|||+++++.-.+
T Consensus       360 ~~a~~~~~g~~~~~vi~kidV~-yqpGh~~~~~g~t~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          360 EDAIRAYAGEKVDPIKDKLDVH-YQPGHLKTVMGETLDATNDWLVCLSKF  408 (595)
T ss_dssp             HHHHHHHHTCSCCCEEEEEECS-SCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             hHhhhhhcccccceeEEEeecc-cccccceeccceEeCCCCCEEEEcCCC
Confidence            65          12 2333322 11      1355779999998765333

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.78  E-value=6.2e-06  Score=83.46  Aligned_cols=242  Identities=11%  Similarity=0.024  Sum_probs=129.2

Q ss_pred             c--CCCCEEEEEecCCCceeEEEEECCCC----CeeEEee--------c-CCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497          338 S--PDGGLIVFNHDFELNAGIKIAKSDGS----KRWTLIK--------D-RTAFYNSWSPTEKHVIYTSTGPIFQSERAT  402 (642)
Q Consensus       338 s--pdg~~l~~~~~~~~~~~l~~~d~~~~----~~~~l~~--------~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  402 (642)
                      +  +++++|+....  ....|+++|+.+.    +......        . .....+..+|||  |++...+..  .+...
T Consensus        90 ~~~~~r~~l~v~~l--~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~--~g~~~  163 (462)
T 2ece_A           90 KPNIERRFLIVPGL--RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNE--EGEGP  163 (462)
T ss_dssp             CTTCCSCEEEEEBT--TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEET--TSCSC
T ss_pred             CCCccCCEEEEccC--CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCc--CCCCC
Confidence            7  88888877653  4578999998755    2222221        1 134456789999  555443211  11223


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEcccc--CCCCccCcEECCCCCeEEEEeC------C----------CCceeEEE
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKILTKE--ETGNNAFPSCSPDGKFLVFRSG------R----------SGHKNLFV  464 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~SpDg~~l~~~~~------~----------~g~~~l~~  464 (642)
                      -.|..++.  +     +++    ....+...  .......+.|+||++.++.+..      .          ....+|.+
T Consensus       164 g~v~vlD~--~-----T~~----v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v  232 (462)
T 2ece_A          164 GGILMLDH--Y-----SFE----PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF  232 (462)
T ss_dssp             CEEEEECT--T-----TCC----EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred             CeEEEEEC--C-----CCe----EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEE
Confidence            34555544  1     121    33344322  1123456889999996655431      0          12458999


Q ss_pred             EECCCCccccceeeCCCC-C-Ccccce--eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee---cC--CCC
Q 039497          465 LDAVNGEFNGDIRQLTDG-P-WIDTMP--SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV---AG--PEG  535 (642)
Q Consensus       465 ~d~~~g~~~~~~~~l~~~-~-~~~~~~--~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~--~~~  535 (642)
                      ||+.+++.   +..|.-. . .....+  +|+|||++++....-..  .+....|+++..+.+..+.+..   ..  ...
T Consensus       233 ~D~~~~k~---~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~--~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~  307 (462)
T 2ece_A          233 WDLRKRKR---IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL--KDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEG  307 (462)
T ss_dssp             EETTTTEE---EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET--TTCCEEEEEEEEETTEEEEEEEEEECCEECCS
T ss_pred             EECCCCcE---eeEEecCCCCCccceeEeeECCCCCEEEEEEeeec--cCCCceEEEEEecCCceeEEEEEeCCCccccc
Confidence            99998775   4444432 1 122233  45999999888776000  0012346555444454332211   00  000


Q ss_pred             CCC-cc------cccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC-CCce---eeccCCCC----
Q 039497          536 SGD-VD------RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD-GSGL---RRLTWNGY----  600 (642)
Q Consensus       536 ~~~-~~------~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~lt~~~~----  600 (642)
                      ... ..      ......+.+|+||++||++.. +.               ..|.++++. .+.+   .++...+.    
T Consensus       308 ~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr-g~---------------d~VavfdV~d~~~~~lv~~I~tGG~~~~~  371 (462)
T 2ece_A          308 NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW-GI---------------GEVRQYDISNPFKPVLTGKVKLGGIFHRA  371 (462)
T ss_dssp             SCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-TT---------------TEEEEEECSSTTSCEEEEEEECBTTTTCB
T ss_pred             cccccccccccCCCceeEEEECCCCCEEEEEeC-CC---------------CEEEEEEecCCCCcEEEEEEEeCCeeccc
Confidence            000 00      014578899999998876654 32               278888874 3222   23322211    


Q ss_pred             ----------CCCCcEEecCCceE-Eee
Q 039497          601 ----------ENGTPAWHPGNQLD-LGK  617 (642)
Q Consensus       601 ----------~~~~~~~s~dg~~~-~~~  617 (642)
                                ....+.+||||+++ +++
T Consensus       372 ~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          372 DHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                      35789999999765 666

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.76  E-value=3.3e-06  Score=83.72  Aligned_cols=198  Identities=8%  Similarity=0.043  Sum_probs=127.8

Q ss_pred             EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497          343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE  421 (642)
Q Consensus       343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  421 (642)
                      +|+|..    ...|.++++++.+...+.. ......+.|+++++.|+++..      ...  .|+.++.  ++..  .+.
T Consensus         3 ~ll~~~----~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~------~~~--~I~~~~~--~g~~--~~~   66 (316)
T 1ijq_A            3 YLFFTN----RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQR--MICSTQL--DRAH--GVS   66 (316)
T ss_dssp             EEEEEC----BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET------TTT--EEEEEEC-----------
T ss_pred             EEEEEC----CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEEC------CCC--cEEEEEC--CCCC--CCc
Confidence            456643    3679999999887666554 456778999999999999873      233  4455544  2100  001


Q ss_pred             ccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEE
Q 039497          422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~  500 (642)
                          ....+..........+++.+.++.|+++...  ...|.++++++..    .+.+.. .......++.+|++.+|++
T Consensus        67 ----~~~~~~~~~~~~p~glavd~~~~~ly~~d~~--~~~I~~~~~~g~~----~~~~~~~~~~~P~~iavdp~~g~ly~  136 (316)
T 1ijq_A           67 ----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK----RKTLFRENGSKPRAIVVDPVHGFMYW  136 (316)
T ss_dssp             -----CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSS----EEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred             ----ccEEEEeCCCCCcCEEEEeecCCeEEEEECC--CCEEEEEeCCCCc----eEEEEECCCCCcceEEeCCCCCEEEE
Confidence                2222221111345567888888888888653  3489999988544    244432 2234466789998888888


Q ss_pred             EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497          501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG  580 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  580 (642)
                      +....      ...|+++++++...+.+..... .       .+..++|++++++||++....                .
T Consensus       137 ~d~~~------~~~I~~~~~dG~~~~~~~~~~~-~-------~P~gla~d~~~~~lY~~D~~~----------------~  186 (316)
T 1ijq_A          137 TDWGT------PAKIKKGGLNGVDIYSLVTENI-Q-------WPNGITLDLLSGRLYWVDSKL----------------H  186 (316)
T ss_dssp             EECSS------SCEEEEEETTSCCEEEEECSSC-S-------CEEEEEEETTTTEEEEEETTT----------------T
T ss_pred             EccCC------CCeEEEEcCCCCCeEEEEECCC-C-------CceEEEEeccCCEEEEEECCC----------------C
Confidence            86532      2469999998877665543222 1       456899999999999987543                2


Q ss_pred             cEEEEEcCCCceeecc
Q 039497          581 DLYVVKLDGSGLRRLT  596 (642)
Q Consensus       581 ~l~~~~~~~~~~~~lt  596 (642)
                      .|+++++++...+.+.
T Consensus       187 ~I~~~d~dg~~~~~~~  202 (316)
T 1ijq_A          187 SISSIDVNGGNRKTIL  202 (316)
T ss_dssp             EEEEEETTSCSCEEEE
T ss_pred             eEEEEecCCCceEEEe
Confidence            8999999987665554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.74  E-value=7.2e-07  Score=91.95  Aligned_cols=190  Identities=8%  Similarity=0.026  Sum_probs=116.7

Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR  453 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~  453 (642)
                      ....++|+|+|+ |+++..      ....++.++  .  +     ++     ....+.... .... ++|+|+|+.|++.
T Consensus       132 ~P~~la~d~~g~-lyv~d~------~~~~I~~id--~--~-----~g-----~~~~~~~~~-~~~~-ia~~~~g~~l~~~  188 (409)
T 3hrp_A          132 YMWGIAAVGNNT-VLAYQR------DDPRVRLIS--V--D-----DN-----KVTTVHPGF-KGGK-PAVTKDKQRVYSI  188 (409)
T ss_dssp             CEEEEEECSTTE-EEEEET------TTTEEEEEE--T--T-----TT-----EEEEEEETC-CBCB-CEECTTSSEEEEE
T ss_pred             CceEEEEeCCCC-EEEEec------CCCcEEEEE--C--C-----CC-----EEEEeeccC-CCCc-eeEecCCCcEEEE
Confidence            466788999987 766663      234554444  4  2     23     444443332 3334 9999999988776


Q ss_pred             eCCCCceeEEEEECCCCccccceeeC----CCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497          454 SGRSGHKNLFVLDAVNGEFNGDIRQL----TDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~~g~~~~~~~~l----~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  529 (642)
                      ... +...|++++..++..   ...+    .........++++|++..||+... .       ..|+++|++++....+.
T Consensus       189 d~~-~~~~I~~~d~~~~~~---~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~-------~~I~~~d~~~~~~~~~~  256 (409)
T 3hrp_A          189 GWE-GTHTVYVYMKASGWA---PTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-N-------KNFGRFNVKTQEVTLIK  256 (409)
T ss_dssp             BSS-TTCEEEEEEGGGTTC---EEEEEECCTTSCSCCCBCEECTTSSEEEEECT-T-------CEEEEEETTTCCEEEEE
T ss_pred             ecC-CCceEEEEEcCCCce---eEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-C-------CcEEEEECCCCCEEEEe
Confidence            643 333899999886653   2333    213334567899996667887433 2       25999999988765552


Q ss_pred             ecCCCCCCCccccccc-ceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC---------
Q 039497          530 VAGPEGSGDVDRERIN-HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG---------  599 (642)
Q Consensus       530 ~~~~~~~~~~~~~~~~-~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~---------  599 (642)
                      .....+.   ....+. .++|+|++..||++....                ..|++++.++. ...+....         
T Consensus       257 ~~~~~g~---~~~~P~~~ia~~p~~g~lyv~d~~~----------------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~  316 (409)
T 3hrp_A          257 QLELSGS---LGTNPGPYLIYYFVDSNFYMSDQNL----------------SSVYKITPDGE-CEWFCGSATQKTVQDGL  316 (409)
T ss_dssp             ECCCCSC---CCCSSCCEEEEETTTTEEEEEETTT----------------TEEEEECTTCC-EEEEEECTTCCSCBCEE
T ss_pred             cccccCC---CCCCccccEEEeCCCCEEEEEeCCC----------------CEEEEEecCCC-EEEEEeCCCCCCcCCCc
Confidence            2111110   000223 899999888888876443                28999998875 33333221         


Q ss_pred             ------CCCCCcEEecCCceEEeec
Q 039497          600 ------YENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       600 ------~~~~~~~~s~dg~~~~~~~  618 (642)
                            .....++++++|++|++..
T Consensus       317 ~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          317 REEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             GGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             ccccEeCCCeEEEEeCCCCEEEEeC
Confidence                  1235678999998888765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.74  E-value=2.8e-06  Score=81.89  Aligned_cols=194  Identities=8%  Similarity=-0.031  Sum_probs=117.1

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ..+.++++|+ |++...   ...|++++.++.....+..  ......++++|+|+ |+++..      ....+.++  +.
T Consensus        70 ~~i~~~~~g~-l~v~~~---~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~------~~~~i~~~--~~  136 (270)
T 1rwi_B           70 QGLAVDGAGT-VYVTDF---NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADR------GNNRVVKL--AA  136 (270)
T ss_dssp             CCEEECTTCC-EEEEET---TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-EEEEEG------GGTEEEEE--CT
T ss_pred             ceeEECCCCC-EEEEcC---CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-EEEEEC------CCCEEEEE--EC
Confidence            3568899998 444432   4689999988876554432  24567889999997 666552      23344444  33


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccce
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMP  489 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~  489 (642)
                              +..    ...............++++|||+ |+++..  +...|++++.+++..    ..... .......+
T Consensus       137 --------~~~----~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i  197 (270)
T 1rwi_B          137 --------GSK----TQTVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVKLEAESNNQ----VVLPFTDITAPWGI  197 (270)
T ss_dssp             --------TCC----SCEECCCCSCCSCCCEEECTTCC-EEEEEG--GGTEEEEECTTTCCE----EECCCSSCCSEEEE
T ss_pred             --------CCc----eeEeeccccCCCceeEEEeCCCC-EEEEEC--CCCEEEEEecCCCce----EeecccCCCCceEE
Confidence                    111    12222111113456789999997 555543  234799999886653    33322 22345667


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP  569 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~  569 (642)
                      +++++|+ |++......       .|++++.++.....+...+. .       .+..+++++||+ |+++....+     
T Consensus       198 ~~d~~g~-l~v~~~~~~-------~v~~~~~~~~~~~~~~~~~~-~-------~p~~i~~~~~g~-l~v~~~~~~-----  255 (270)
T 1rwi_B          198 AVDEAGT-VYVTEHNTN-------QVVKLLAGSTTSTVLPFTGL-N-------TPLAVAVDSDRT-VYVADRGND-----  255 (270)
T ss_dssp             EECTTCC-EEEEETTTS-------CEEEECTTCSCCEECCCCSC-S-------CEEEEEECTTCC-EEEEEGGGT-----
T ss_pred             EECCCCC-EEEEECCCC-------cEEEEcCCCCcceeeccCCC-C-------CceeEEECCCCC-EEEEECCCC-----
Confidence            9999994 666654332       39999998765544322111 1       457889999997 666654332     


Q ss_pred             CCCCCCCCCCCcEEEEEcCCCc
Q 039497          570 VSWPNQFQPYGDLYVVKLDGSG  591 (642)
Q Consensus       570 ~~~~~~~~~~~~l~~~~~~~~~  591 (642)
                                 .|..+++...+
T Consensus       256 -----------~v~~~~~~~~~  266 (270)
T 1rwi_B          256 -----------RVVKLTSLEHH  266 (270)
T ss_dssp             -----------EEEEECCCGGG
T ss_pred             -----------EEEEEcCCCcc
Confidence                       78888766543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.74  E-value=1.5e-06  Score=85.84  Aligned_cols=227  Identities=11%  Similarity=0.085  Sum_probs=133.5

Q ss_pred             CccEEcCCCCEEEEEe-----cCCCceeEEEEECCCCCeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497          333 SFPSFSPDGGLIVFNH-----DFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERA  401 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~-----~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  401 (642)
                      ..+.|+++|+ |++..     .......|++++..+++...+..      ...+..+.+++++..|+++..       ..
T Consensus        21 ~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-------~~   92 (314)
T 1pjx_A           21 EGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------RL   92 (314)
T ss_dssp             EEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------TT
T ss_pred             cCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-------CC
Confidence            3668999997 44440     01223679999988877655432      245678899999445666652       22


Q ss_pred             eEEEEEEEeecCCCCCCCCCccccceEEc-ccc----CCCCccCcEECCCCCeEEEEeCCCC-------------ceeEE
Q 039497          402 TVQIARVSFQLDPSDDNNREEIPCDVKIL-TKE----ETGNNAFPSCSPDGKFLVFRSGRSG-------------HKNLF  463 (642)
Q Consensus       402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~----~~~~~~~~~~SpDg~~l~~~~~~~g-------------~~~l~  463 (642)
                        .|+.++.        .+     +...+ ...    .......++++|||+. +++....+             ...|+
T Consensus        93 --~l~~~d~--------~g-----~~~~~~~~~~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~l~  156 (314)
T 1pjx_A           93 --GLLVVQT--------DG-----TFEEIAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIY  156 (314)
T ss_dssp             --EEEEEET--------TS-----CEEECCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred             --CEEEEeC--------CC-----CEEEEEeccCCCccccCCcCEEECCCCCE-EEEecCcccccccccccccCCCCeEE
Confidence              3555555        22     33333 211    1123567899999964 44443221             25799


Q ss_pred             EEECCCCccccceeeCCCCCCcccceeEe----cCCCEEEEEecCCCCCCCCceeEEEEeCC-CCceE---Eeeec-CCC
Q 039497          464 VLDAVNGEFNGDIRQLTDGPWIDTMPSWS----PKGDLIAFSSNRHNPDNVEAFSLYVIKPD-GSGLR---RIHVA-GPE  534 (642)
Q Consensus       464 ~~d~~~g~~~~~~~~l~~~~~~~~~~~~s----pdG~~l~~~~~~~~~~~~~~~~l~~~d~~-~~~~~---~l~~~-~~~  534 (642)
                      +++.+ |+.    ..+.........++|+    |||+.|++.....       ..|++++++ .++..   .+... ...
T Consensus       157 ~~~~~-g~~----~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~-------~~i~~~~~~~~g~~~~~~~~~~~~~~~  224 (314)
T 1pjx_A          157 CFTTD-GQM----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT-------KKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             EECTT-SCE----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTT-------TEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             EECCC-CCE----EEeccCCCCcceEEEecccCCCCCEEEEEECCC-------CeEEEEECCCCCccccceEEEECCCCC
Confidence            99987 663    4433222334567999    9998888776543       248999876 34322   12111 111


Q ss_pred             -CCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCc
Q 039497          535 -GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQ  612 (642)
Q Consensus       535 -~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~  612 (642)
                       .       .+..+.+++||+ |+++....                ..|++++.++++ ...+.........++|++||+
T Consensus       225 ~~-------~p~~i~~d~~G~-l~v~~~~~----------------~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~  280 (314)
T 1pjx_A          225 EG-------GADGMDFDEDNN-LLVANWGS----------------SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             SC-------EEEEEEEBTTCC-EEEEEETT----------------TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             CC-------CCCceEECCCCC-EEEEEcCC----------------CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCC
Confidence             2       356789999997 44443222                279999988443 444443334557889999998


Q ss_pred             -eEEeecC
Q 039497          613 -LDLGKLR  619 (642)
Q Consensus       613 -~~~~~~~  619 (642)
                       ++++...
T Consensus       281 ~l~v~~~~  288 (314)
T 1pjx_A          281 TIFVTEHE  288 (314)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEeCC
Confidence             6666544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.73  E-value=1.6e-06  Score=85.69  Aligned_cols=201  Identities=9%  Similarity=0.034  Sum_probs=117.2

Q ss_pred             ccEEcCC-CCEEEEEecCCCceeEEEEECCCCCeeEE-ee------cCCceeeeeecCCCEEEEEEcCCC-------ccc
Q 039497          334 FPSFSPD-GGLIVFNHDFELNAGIKIAKSDGSKRWTL-IK------DRTAFYNSWSPTEKHVIYTSTGPI-------FQS  398 (642)
Q Consensus       334 ~~~~spd-g~~l~~~~~~~~~~~l~~~d~~~~~~~~l-~~------~~~~~~~~~spdg~~l~~~~~~~~-------~~~  398 (642)
                      .+.++++ |+ |++...   ...|++++.+ ++...+ ..      ...+..+.++|+|+ |+++.....       ...
T Consensus        75 ~i~~~~~~g~-l~v~~~---~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           75 GCQCDRDANQ-LFVADM---RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             EEEECSSSSE-EEEEET---TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTT
T ss_pred             eEEEecCCCc-EEEEEC---CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccc
Confidence            4578898 65 544432   2379999998 665554 32      12367889999997 555542100       000


Q ss_pred             CCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEEC----CCCCeEEEEeCCCCceeEEEEECC-CCccc
Q 039497          399 ERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCS----PDGKFLVFRSGRSGHKNLFVLDAV-NGEFN  473 (642)
Q Consensus       399 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S----pDg~~l~~~~~~~g~~~l~~~d~~-~g~~~  473 (642)
                      ......|+.++.        .+     ....+.... .....++|+    |||+.|++.....  ..|++++.+ +|+..
T Consensus       149 ~~~~~~l~~~~~--------~g-----~~~~~~~~~-~~~~~i~~~~~~d~dg~~l~v~~~~~--~~i~~~~~~~~g~~~  212 (314)
T 1pjx_A          149 QEKFGSIYCFTT--------DG-----QMIQVDTAF-QFPNGIAVRHMNDGRPYQLIVAETPT--KKLWSYDIKGPAKIE  212 (314)
T ss_dssp             SSSCEEEEEECT--------TS-----CEEEEEEEE-SSEEEEEEEECTTSCEEEEEEEETTT--TEEEEEEEEETTEEE
T ss_pred             cCCCCeEEEECC--------CC-----CEEEeccCC-CCcceEEEecccCCCCCEEEEEECCC--CeEEEEECCCCCccc
Confidence            011356777765        22     333332222 344567899    9998887776433  478888876 45410


Q ss_pred             --cceeeCCCCC-CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEeeecCCCCCCCcccccccceEE
Q 039497          474 --GDIRQLTDGP-WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRIHVAGPEGSGDVDRERINHVCF  549 (642)
Q Consensus       474 --~~~~~l~~~~-~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~  549 (642)
                        .....+.... .....++++++|+.++.....+        .|+++|.++++. ..+.. . ..       .+..++|
T Consensus       213 ~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~--------~i~~~d~~~g~~~~~~~~-~-~~-------~~~~i~~  275 (314)
T 1pjx_A          213 NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS--------HIEVFGPDGGQPKMRIRC-P-FE-------KPSNLHF  275 (314)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT--------EEEEECTTCBSCSEEEEC-S-SS-------CEEEEEE
T ss_pred             cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC--------EEEEEcCCCCcEeEEEeC-C-CC-------CceeEEE
Confidence              0012222221 3345678999997443333332        399999985543 33322 1 12       4678899


Q ss_pred             cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          550 SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       550 S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                      ++||++|+++....+                .|+.++++.
T Consensus       276 ~~dg~~l~v~~~~~~----------------~l~~~~~~~  299 (314)
T 1pjx_A          276 KPQTKTIFVTEHENN----------------AVWKFEWQR  299 (314)
T ss_dssp             CTTSSEEEEEETTTT----------------EEEEEECSS
T ss_pred             CCCCCEEEEEeCCCC----------------eEEEEeCCC
Confidence            999998888775432                799998764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.71  E-value=3.9e-06  Score=83.02  Aligned_cols=196  Identities=11%  Similarity=0.083  Sum_probs=127.2

Q ss_pred             EEEEEecCCCceeEEEEECCCCC--eeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497          343 LIVFNHDFELNAGIKIAKSDGSK--RWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN  419 (642)
Q Consensus       343 ~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  419 (642)
                      +|+|..    ...|.++++++..  ...+.. ......+.|.+.+..|+++...      ..  .|+.+..  +     +
T Consensus         6 ~ll~~~----~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~------~~--~I~r~~~--~-----g   66 (318)
T 3sov_A            6 LLLYAN----RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS------EE--AIKRTEF--N-----K   66 (318)
T ss_dssp             EEEEEC----EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT------TT--EEEEEET--T-----S
T ss_pred             EEEEEc----cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC------CC--cEEEEEc--c-----C
Confidence            456633    4789999998874  222222 3446678999988889988732      33  4555655  3     2


Q ss_pred             CCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccceeEecCCCEE
Q 039497          420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLI  498 (642)
Q Consensus       420 ~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l  498 (642)
                      +..   ....+...- .....+++.+.+..|+++...  ...|.++++++...    +.+. ........+++.|.+.+|
T Consensus        67 ~~~---~~~~~~~~l-~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~----~~l~~~~~~~P~giavdp~~g~l  136 (318)
T 3sov_A           67 TES---VQNVVVSGL-LSPDGLACDWLGEKLYWTDSE--TNRIEVSNLDGSLR----KVLFWQELDQPRAIALDPSSGFM  136 (318)
T ss_dssp             SSC---CCEEEEECC-SCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCSC----EEEECSSCSSEEEEEEEGGGTEE
T ss_pred             CCc---eEEEEcCCC-CCccEEEEEcCCCeEEEEECC--CCEEEEEECCCCcE----EEEEeCCCCCccEEEEeCCCCEE
Confidence            210   112222222 345568888888888888653  34899999885442    4443 332344667899988888


Q ss_pred             EEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCC
Q 039497          499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQP  578 (642)
Q Consensus       499 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~  578 (642)
                      +++....      ...|+++++++...+.+...+..        .+..++|+++++.||++....               
T Consensus       137 y~td~~~------~~~I~r~~~dG~~~~~~~~~~l~--------~Pnglavd~~~~~lY~aD~~~---------------  187 (318)
T 3sov_A          137 YWTDWGE------VPKIERAGMDGSSRFIIINSEIY--------WPNGLTLDYEEQKLYWADAKL---------------  187 (318)
T ss_dssp             EEEECSS------SCEEEEEETTSCSCEEEECSSCS--------CEEEEEEETTTTEEEEEETTT---------------
T ss_pred             EEEecCC------CCEEEEEEcCCCCeEEEEECCCC--------CccEEEEeccCCEEEEEECCC---------------
Confidence            8886431      34699999998776666543322        356899999999999987543               


Q ss_pred             CCcEEEEEcCCCceeeccC
Q 039497          579 YGDLYVVKLDGSGLRRLTW  597 (642)
Q Consensus       579 ~~~l~~~~~~~~~~~~lt~  597 (642)
                       ..|+++++++...+.+..
T Consensus       188 -~~I~~~d~dG~~~~~~~~  205 (318)
T 3sov_A          188 -NFIHKSNLDGTNRQAVVK  205 (318)
T ss_dssp             -TEEEEEETTSCSCEEEEC
T ss_pred             -CEEEEEcCCCCceEEEec
Confidence             289999999876655543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.67  E-value=3.5e-06  Score=80.04  Aligned_cols=202  Identities=13%  Similarity=0.066  Sum_probs=122.6

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      .+.|++|| +|+......+...|.++|+++++...... ........+..+|++|+.+..      ..+.+.+++...  
T Consensus        25 Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~------~~~~v~viD~~t--   95 (266)
T 2iwa_A           25 GLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW------LKNIGFIYDRRT--   95 (266)
T ss_dssp             EEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET------TCSEEEEEETTT--
T ss_pred             cEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe------cCCEEEEEECCC--
Confidence            45789986 45544433456899999999988765544 333444456667888888874      355555555432  


Q ss_pred             CCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC--C---ccc
Q 039497          413 DPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--W---IDT  487 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~---~~~  487 (642)
                             ..    ....+....   .....+++||++++.+ +  +...|+.+|.++.+.   +..+.-..  .   ...
T Consensus        96 -------~~----v~~~i~~g~---~~g~glt~Dg~~l~vs-~--gs~~l~viD~~t~~v---~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           96 -------LS----NIKNFTHQM---KDGWGLATDGKILYGS-D--GTSILYEIDPHTFKL---IKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             -------TE----EEEEEECCS---SSCCEEEECSSSEEEE-C--SSSEEEEECTTTCCE---EEEEECEETTEECCCEE
T ss_pred             -------Cc----EEEEEECCC---CCeEEEEECCCEEEEE-C--CCCeEEEEECCCCcE---EEEEEECCCCcccccce
Confidence                   21    334443321   1235688899998765 3  456999999998775   45544321  1   234


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCC----CCCcccccccceEEcCCCCEEEEEEec
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEG----SGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~----~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      .+.|. || .||......       ..|.++|+++++........ ...    ...........++|+||+++|+++...
T Consensus       156 ele~~-dg-~lyvn~~~~-------~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          156 ELEYI-NG-EVWANIWQT-------DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             EEEEE-TT-EEEEEETTS-------SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEE-CC-EEEEecCCC-------CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence            55777 66 566554322       35999999998875544321 000    000000134678999999998877654


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          563 GAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                      .                ..|+.+++..
T Consensus       227 ~----------------~~v~~i~l~~  237 (266)
T 2iwa_A          227 W----------------PKLFEIKLHL  237 (266)
T ss_dssp             C----------------SEEEEEEEEE
T ss_pred             C----------------CeEEEEEEec
Confidence            3                2899888754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.66  E-value=1.3e-05  Score=80.02  Aligned_cols=204  Identities=11%  Similarity=0.025  Sum_probs=118.6

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCC--eeEEee----------cCCceeeeeecCCCEEEEEEcCCCcccCCC
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK--RWTLIK----------DRTAFYNSWSPTEKHVIYTSTGPIFQSERA  401 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~--~~~l~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  401 (642)
                      .++++|+|+ |++..  .....|++++.++..  ...+..          -.....++++|++..|+++..     ....
T Consensus        95 gia~d~~g~-l~v~d--~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~-----~~~~  166 (329)
T 3fvz_A           95 GLSIDTDGN-YWVTD--VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG-----YCNS  166 (329)
T ss_dssp             EEEECTTSC-EEEEE--TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC-----SSCC
T ss_pred             EEEECCCCC-EEEEE--CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC-----CCCC
Confidence            457899999 44443  335689999988763  333321          114667899995445666652     0234


Q ss_pred             eEEEEEEEeecCCCCCCCCCccccceEEccccC---------CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497          402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEE---------TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~  472 (642)
                      .+.+|+  .  +      +.    ....+....         ......++++||+..|+++...  ...|.+++.++|+.
T Consensus       167 ~I~~~~--~--~------g~----~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--~~~I~~~~~~~G~~  230 (329)
T 3fvz_A          167 RIVQFS--P--S------GK----FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--NGRIQCFKTDTKEF  230 (329)
T ss_dssp             EEEEEC--T--T------SC----EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--TTEEEEEETTTCCE
T ss_pred             eEEEEc--C--C------CC----EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--CCEEEEEECCCCcE
Confidence            444444  3  2      21    233332111         0225568999997778777653  34899999987876


Q ss_pred             ccceeeCCC--CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec--CCCCCCCcccccccceE
Q 039497          473 NGDIRQLTD--GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA--GPEGSGDVDRERINHVC  548 (642)
Q Consensus       473 ~~~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~  548 (642)
                         +..+..  .......++++| | .++.......--......|+++++.+++.......  ....       .+..++
T Consensus       231 ---~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-------~p~~ia  298 (329)
T 3fvz_A          231 ---VREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-------MPHDIV  298 (329)
T ss_dssp             ---EEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-------SEEEEE
T ss_pred             ---EEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-------CeeEEE
Confidence               555532  223345678898 3 33333222110011344699999888776554321  1112       467899


Q ss_pred             EcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          549 FSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       549 ~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                      ++||| .|+++....+                .|+++++++.
T Consensus       299 ~~~dG-~lyvad~~~~----------------~I~~~~~~~~  323 (329)
T 3fvz_A          299 ASEDG-TVYIGDAHTN----------------TVWKFTLTEK  323 (329)
T ss_dssp             ECTTS-EEEEEESSSC----------------CEEEEEEEEC
T ss_pred             ECCCC-CEEEEECCCC----------------EEEEEeCCcc
Confidence            99999 6766654332                7999887654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.65  E-value=2.8e-05  Score=76.90  Aligned_cols=206  Identities=12%  Similarity=0.008  Sum_probs=129.0

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCC----CCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG----SKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~----~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      ..+.|++++++|++...  ....|+++++++    .....+..  ......+++.+.++.|+++..      ....+  .
T Consensus        33 ~g~~~d~~~~~ly~~D~--~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~------~~~~I--~  102 (316)
T 1ijq_A           33 VALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS------VLGTV--S  102 (316)
T ss_dssp             EEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET------TTTEE--E
T ss_pred             EEEEEEeCCCEEEEEEC--CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEEC------CCCEE--E
Confidence            35688988888888763  356899999887    33333332  235677888888888988873      23444  4


Q ss_pred             EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCc
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWI  485 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~  485 (642)
                      .++.  +     +.     ..+.+..........+++.|++.+|+++... ....|++++++ |+.   .+.+.. .-..
T Consensus       103 ~~~~--~-----g~-----~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~d-G~~---~~~~~~~~~~~  165 (316)
T 1ijq_A          103 VADT--K-----GV-----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN-GVD---IYSLVTENIQW  165 (316)
T ss_dssp             EEET--T-----SS-----SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETT-SCC---EEEEECSSCSC
T ss_pred             EEeC--C-----CC-----ceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCC-CCC---eEEEEECCCCC
Confidence            4554  3     22     3333332221455678999988888887642 22589999987 443   344432 2234


Q ss_pred             ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      ...++++|+++.||++....       ..|+++|+++...+.+.... ...       .+..+++  |+..||++.... 
T Consensus       166 P~gla~d~~~~~lY~~D~~~-------~~I~~~d~dg~~~~~~~~~~~~~~-------~P~giav--~~~~ly~~d~~~-  228 (316)
T 1ijq_A          166 PNGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILEDEKRLA-------HPFSLAV--FEDKVFWTDIIN-  228 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEEECTTTTS-------SEEEEEE--ETTEEEEEETTT-
T ss_pred             ceEEEEeccCCEEEEEECCC-------CeEEEEecCCCceEEEeecCCccC-------CcEEEEE--ECCEEEEEECCC-
Confidence            46789999999999987654       35999999987777665421 111       3345555  467788877443 


Q ss_pred             cccCCCCCCCCCCCCCcEEEEEcC-CCceeeccC
Q 039497          565 VMAEPVSWPNQFQPYGDLYVVKLD-GSGLRRLTW  597 (642)
Q Consensus       565 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lt~  597 (642)
                                     ..|++++.. +...+.+..
T Consensus       229 ---------------~~V~~~~~~~g~~~~~i~~  247 (316)
T 1ijq_A          229 ---------------EAIFSANRLTGSDVNLLAE  247 (316)
T ss_dssp             ---------------TEEEEEETTTCCCCEEEEC
T ss_pred             ---------------CeEEEEeCCCCcceEEEec
Confidence                           289999874 444555543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.64  E-value=8.2e-06  Score=83.66  Aligned_cols=199  Identities=8%  Similarity=0.037  Sum_probs=131.4

Q ss_pred             EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497          343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE  421 (642)
Q Consensus       343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  421 (642)
                      +|+|..    ...|+.+++++.....+.. ...+..+.|++.+..|+++...      ...  |+.+..  +     +..
T Consensus        85 ~ll~~~----~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~------~~~--I~~~~~--~-----g~~  145 (400)
T 3p5b_L           85 YLFFTN----RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------QRM--ICSTQL--D-----RAH  145 (400)
T ss_dssp             EEEEEE----TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETT------TTE--EEEEEC-----------
T ss_pred             eeEEec----cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecC------CCe--EEEEEc--c-----cCC
Confidence            455643    3689999999887666655 4567789999999999998732      334  444444  2     110


Q ss_pred             ccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEE
Q 039497          422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~  500 (642)
                      . ......+..........+++.+.++.|+++...  ...|+++++++...    +.+.. .......++++|.+.+||+
T Consensus       146 ~-~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~--~~~I~~~~~~g~~~----~~l~~~~~~~P~~iavdp~~g~ly~  218 (400)
T 3p5b_L          146 G-VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYW  218 (400)
T ss_dssp             ---CCCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEECTTTCSE----EEEEECSSCCEEEEEEETTTTEEEE
T ss_pred             C-CCcceEEEeCCCCCcccEEEEecCCceEEEECC--CCeEEEEeCCCCce----EEEEeCCCCCcceEEEecccCeEEE
Confidence            0 002233332221345667888878888888753  34899999985543    44432 2233456799998888888


Q ss_pred             EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497          501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG  580 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  580 (642)
                      +....      ...|+++++++...+.+......        .+..+++++++++||++....                .
T Consensus       219 td~~~------~~~I~~~~~dG~~~~~~~~~~l~--------~P~glavd~~~~~lY~aD~~~----------------~  268 (400)
T 3p5b_L          219 TDWGT------PAKIKKGGLNGVDIYSLVTENIQ--------WPNGITLDLLSGRLYWVDSKL----------------H  268 (400)
T ss_dssp             EECSS------SCCEEEEETTSCSCEEEECSSCS--------CEEEEEEETTTTEEEEEETTT----------------T
T ss_pred             EeCCC------CCEEEEEeCCCCccEEEEECCCC--------ceEEEEEEeCCCEEEEEECCC----------------C
Confidence            87432      23599999998877766543322        457899999999999987543                2


Q ss_pred             cEEEEEcCCCceeeccC
Q 039497          581 DLYVVKLDGSGLRRLTW  597 (642)
Q Consensus       581 ~l~~~~~~~~~~~~lt~  597 (642)
                      .|+++++++...+.+..
T Consensus       269 ~I~~~d~dG~~~~~~~~  285 (400)
T 3p5b_L          269 SISSIDVNGGNRKTILE  285 (400)
T ss_dssp             EEEEEETTSCCCEEEEE
T ss_pred             EEEEEeCCCCccEEEEe
Confidence            89999999877665543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.61  E-value=1.1e-05  Score=78.43  Aligned_cols=182  Identities=13%  Similarity=0.132  Sum_probs=104.5

Q ss_pred             ccEE-cCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          334 FPSF-SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       334 ~~~~-spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      .+++ .++|+ |++... .....|++++.++.....+..  ......++++|+|+ |+++..      ....+.+|+  .
T Consensus        81 ~i~~~~~~g~-l~v~~~-~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~~i~~~~--~  149 (286)
T 1q7f_A           81 RVAVVRNSGD-IIVTER-SPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVEC------KVMRVIIFD--Q  149 (286)
T ss_dssp             EEEEETTTTE-EEEEEC-GGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEET------TTTEEEEEC--T
T ss_pred             EEEEEcCCCe-EEEEcC-CCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC-EEEEEC------CCCEEEEEc--C
Confidence            3456 45664 444431 124678999966554333322  23567889999997 655552      234555544  3


Q ss_pred             ecCCCCCCCCCccccceEEccc-cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC--Cccc
Q 039497          411 QLDPSDDNNREEIPCDVKILTK-EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--WIDT  487 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~~~~  487 (642)
                        +      +.    ....+.. ........++++|||+ |+++..  ....|++++.+ |+.   +..+....  ....
T Consensus       150 --~------g~----~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~-g~~---~~~~~~~g~~~~p~  210 (286)
T 1q7f_A          150 --N------GN----VLHKFGCSKHLEFPNGVVVNDKQE-IFISDN--RAHCVKVFNYE-GQY---LRQIGGEGITNYPI  210 (286)
T ss_dssp             --T------SC----EEEEEECTTTCSSEEEEEECSSSE-EEEEEG--GGTEEEEEETT-CCE---EEEESCTTTSCSEE
T ss_pred             --C------CC----EEEEeCCCCccCCcEEEEECCCCC-EEEEEC--CCCEEEEEcCC-CCE---EEEEccCCccCCCc
Confidence              2      21    3333321 1113456789999997 555543  23479999986 443   35554321  3456


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      .++++|+|+ |+++.....      ..|.+++.++.....+.......       .+..++++|||+ |+++.
T Consensus       211 ~i~~d~~G~-l~v~~~~~~------~~i~~~~~~g~~~~~~~~~~~~~-------~~~~i~~~~~g~-l~vs~  268 (286)
T 1q7f_A          211 GVGINSNGE-ILIADNHNN------FNLTIFTQDGQLISALESKVKHA-------QCFDVALMDDGS-VVLAS  268 (286)
T ss_dssp             EEEECTTCC-EEEEECSSS------CEEEEECTTSCEEEEEEESSCCS-------CEEEEEEETTTE-EEEEE
T ss_pred             EEEECCCCC-EEEEeCCCC------EEEEEECCCCCEEEEEcccCCCC-------cceeEEECCCCc-EEEEC
Confidence            679999997 444443221      14999998776665554422221       345789999996 55554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.58  E-value=3.8e-06  Score=81.46  Aligned_cols=204  Identities=14%  Similarity=0.101  Sum_probs=121.3

Q ss_pred             CCceeEEEEECCCCCeeEEee-c--CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497          351 ELNAGIKIAKSDGSKRWTLIK-D--RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV  427 (642)
Q Consensus       351 ~~~~~l~~~d~~~~~~~~l~~-~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  427 (642)
                      .....|+++|.++++...... .  .....+.++|||+.|+ ..        ...  ++.++.  +     +.     ..
T Consensus        12 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~--------~~~--V~~~d~--~-----G~-----~~   68 (276)
T 3no2_A           12 SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SY--------SKG--AKMITR--D-----GR-----EL   68 (276)
T ss_dssp             TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-EC--------BSE--EEEECT--T-----SC-----EE
T ss_pred             CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eC--------CCC--EEEECC--C-----CC-----EE
Confidence            345788899996776544333 2  3578889999998666 32        222  333433  2     12     34


Q ss_pred             EEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC------CcccceeEecCCCEEEEE
Q 039497          428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP------WIDTMPSWSPKGDLIAFS  501 (642)
Q Consensus       428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~------~~~~~~~~spdG~~l~~~  501 (642)
                      ..+..........+.++|||+.|+..+..  ...|+.++.+ |+.   +..+.-..      .....+...++|++|+..
T Consensus        69 W~~~~~~~~~~~~~~~~~dG~~lv~~~~~--~~~v~~vd~~-Gk~---l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~  142 (276)
T 3no2_A           69 WNIAAPAGCEMQTARILPDGNALVAWCGH--PSTILEVNMK-GEV---LSKTEFETGIERPHAQFRQINKNKKGNYLVPL  142 (276)
T ss_dssp             EEEECCTTCEEEEEEECTTSCEEEEEEST--TEEEEEECTT-SCE---EEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred             EEEcCCCCccccccEECCCCCEEEEecCC--CCEEEEEeCC-CCE---EEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence            44443221244567899999988876631  4578888875 654   33332111      122345788999977655


Q ss_pred             ecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCc
Q 039497          502 SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD  581 (642)
Q Consensus       502 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  581 (642)
                      ....        .|+.+|.+++........   .       .+..+.+.++|..|+.....                 ..
T Consensus       143 ~~~~--------~v~~~d~~G~~~w~~~~~---~-------~~~~~~~~~~g~~~v~~~~~-----------------~~  187 (276)
T 3no2_A          143 FATS--------EVREIAPNGQLLNSVKLS---G-------TPFSSAFLDNGDCLVACGDA-----------------HC  187 (276)
T ss_dssp             TTTT--------EEEEECTTSCEEEEEECS---S-------CCCEEEECTTSCEEEECBTT-----------------SE
T ss_pred             cCCC--------EEEEECCCCCEEEEEECC---C-------CccceeEcCCCCEEEEeCCC-----------------Ce
Confidence            4433        499999984443333321   1       23456778999877654432                 27


Q ss_pred             EEEEEcCCC-ceeeccCCC------CCCCCcEEecCCceEEeec
Q 039497          582 LYVVKLDGS-GLRRLTWNG------YENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       582 l~~~~~~~~-~~~~lt~~~------~~~~~~~~s~dg~~~~~~~  618 (642)
                      |+.+|.+++ .+-++....      .....+...++|..+++..
T Consensus       188 v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          188 FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            999998844 444554321      1124556678999888874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.57  E-value=1.1e-05  Score=79.47  Aligned_cols=223  Identities=12%  Similarity=0.065  Sum_probs=125.5

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      .++|+++|+ |++...  ....|++++.++..............+++++||+ |+++...      .....++.++.  .
T Consensus        36 gia~~~~g~-lyv~d~--~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~-l~vad~~------~~~~~v~~~d~--~  103 (306)
T 2p4o_A           36 NLASAPDGT-IFVTNH--EVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGWN------ADSIPVVSLVK--S  103 (306)
T ss_dssp             EEEECTTSC-EEEEET--TTTEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEEC------TTSCEEEEEEC--T
T ss_pred             eEEECCCCC-EEEEeC--CCCeEEEECCCCceEEEEeCCCCceeEEEcCCCc-EEEEecc------CCcceEEEEcC--C
Confidence            568999998 555542  3467999998875433333355677889999998 5555521      22345666654  2


Q ss_pred             CCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee----C---C-CCC-
Q 039497          414 PSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ----L---T-DGP-  483 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~----l---~-~~~-  483 (642)
                           ++     +.+.+.... ......++..+++ .+++....  ...||++|..+++.  .+..    +   . ... 
T Consensus       104 -----~g-----~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~--~g~i~~~d~~~~~~--~v~~~~~~~~~~~~~~~~  168 (306)
T 2p4o_A          104 -----DG-----TVETLLTLPDAIFLNGITPLSDT-QYLTADSY--RGAIWLIDVVQPSG--SIWLEHPMLARSNSESVF  168 (306)
T ss_dssp             -----TS-----CEEEEEECTTCSCEEEEEESSSS-EEEEEETT--TTEEEEEETTTTEE--EEEEECGGGSCSSTTCCS
T ss_pred             -----CC-----eEEEEEeCCCccccCcccccCCC-cEEEEECC--CCeEEEEeCCCCcE--eEEEECCccccccccCCC
Confidence                 23     333332211 1222334445544 45554432  34899999876531  0110    0   0 011 


Q ss_pred             CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-Cce---EEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497          484 WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGL---RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT  559 (642)
Q Consensus       484 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~---~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~  559 (642)
                      .....  .+|||++||+......       .|+++++++ +..   +.+...   .       .+..+++++||+ |+++
T Consensus       169 ~~png--is~dg~~lyv~d~~~~-------~I~~~~~~~~g~~~~~~~~~~~---~-------~P~gi~vd~dG~-l~va  228 (306)
T 2p4o_A          169 PAANG--LKRFGNFLYVSNTEKM-------LLLRIPVDSTDKPGEPEIFVEQ---T-------NIDDFAFDVEGN-LYGA  228 (306)
T ss_dssp             CSEEE--EEEETTEEEEEETTTT-------EEEEEEBCTTSCBCCCEEEEES---C-------CCSSEEEBTTCC-EEEE
T ss_pred             CcCCC--cCcCCCEEEEEeCCCC-------EEEEEEeCCCCCCCccEEEecc---C-------CCCCeEECCCCC-EEEE
Confidence            11122  3999999998876543       599999875 322   222221   1       346789999996 5444


Q ss_pred             EecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee--eccCCCCCCCCcEEe---cCC-ceEEeecC
Q 039497          560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR--RLTWNGYENGTPAWH---PGN-QLDLGKLR  619 (642)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~lt~~~~~~~~~~~s---~dg-~~~~~~~~  619 (642)
                      ....                ..|.+++.++....  .+.........++|.   ||+ .+|++...
T Consensus       229 ~~~~----------------~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          229 THIY----------------NSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CBTT----------------CCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             eCCC----------------CeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            4322                27999998754321  233222345678998   885 55666543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.55  E-value=2.9e-05  Score=76.78  Aligned_cols=204  Identities=11%  Similarity=0.051  Sum_probs=130.5

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCe-eEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR-WTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~-~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      .+.|.+.++.|+++..  ....|++++++++.. ..+..  -.....+++.+.+..|+++..      ....  |..++.
T Consensus        39 ~ld~d~~~~~lyw~D~--~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~------~~~~--I~~~~~  108 (318)
T 3sov_A           39 AVDFVFSHGLIYWSDV--SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS------ETNR--IEVSNL  108 (318)
T ss_dssp             EEEEEGGGTEEEEEET--TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEET------TTTE--EEEEET
T ss_pred             EEEEEeCCCEEEEEEC--CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEEC------CCCE--EEEEEC
Confidence            4578887788888763  356899999988753 22222  245667888888888988873      2344  444544


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCcccce
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMP  489 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~  489 (642)
                        +     +.     ..+.+..........+++.|.+.+|+++... ....|+++++++..    .+.+. ..-.....+
T Consensus       109 --d-----G~-----~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~----~~~~~~~~l~~Pngl  171 (318)
T 3sov_A          109 --D-----GS-----LRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSS----RFIIINSEIYWPNGL  171 (318)
T ss_dssp             --T-----SC-----SCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCS----CEEEECSSCSCEEEE
T ss_pred             --C-----CC-----cEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCC----eEEEEECCCCCccEE
Confidence              3     22     2333332222455678999988888887642 24589999998443    24442 322344678


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP  569 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~  569 (642)
                      +++|+++.||++....       ..|+++++++...+.+..... .       .+..+++  |+..||++....      
T Consensus       172 avd~~~~~lY~aD~~~-------~~I~~~d~dG~~~~~~~~~~~-~-------~P~glav--~~~~lywtd~~~------  228 (318)
T 3sov_A          172 TLDYEEQKLYWADAKL-------NFIHKSNLDGTNRQAVVKGSL-P-------HPFALTL--FEDILYWTDWST------  228 (318)
T ss_dssp             EEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEECSCC-S-------CEEEEEE--ETTEEEEEETTT------
T ss_pred             EEeccCCEEEEEECCC-------CEEEEEcCCCCceEEEecCCC-C-------CceEEEE--eCCEEEEEecCC------
Confidence            9999999999997654       359999999877776654221 2       3445555  566788875432      


Q ss_pred             CCCCCCCCCCCcEEEEEcC-CCceeeccC
Q 039497          570 VSWPNQFQPYGDLYVVKLD-GSGLRRLTW  597 (642)
Q Consensus       570 ~~~~~~~~~~~~l~~~~~~-~~~~~~lt~  597 (642)
                                ..|++++.. +...+.|..
T Consensus       229 ----------~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          229 ----------HSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             ----------TEEEEEETTTCCSCEEEEC
T ss_pred             ----------CeEEEEECCCCCceEEEeC
Confidence                      289999985 444444443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.53  E-value=2.9e-05  Score=75.80  Aligned_cols=216  Identities=13%  Similarity=0.130  Sum_probs=127.5

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      .+.++++|+ |.+..  .....|++++.+ ++......   ...+..+.++++|+ ++++..      ....  |+.++.
T Consensus        19 ~i~~d~~g~-l~v~~--~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~~--i~~~~~   85 (299)
T 2z2n_A           19 GITVSDKGK-VWITQ--HKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTEN------AANK--IGRITK   85 (299)
T ss_dssp             EEEECTTSC-EEEEE--TTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEET------TTTE--EEEECT
T ss_pred             ceEECCCCC-EEEEe--cCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCC------CCCe--EEEECC
Confidence            446788887 44433  224679999988 55554432   34567888999987 555542      1233  444444


Q ss_pred             ecCCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC--CCCCCccc
Q 039497          411 QLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL--TDGPWIDT  487 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l--~~~~~~~~  487 (642)
                        +      +     ....+... .......+++.|||+ |+++...  ...|++++. +|+.    ..+  ........
T Consensus        86 --~------g-----~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~d~-~g~~----~~~~~~~~~~~~~  144 (299)
T 2z2n_A           86 --K------G-----IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMN--GNRIGRITD-DGKI----REYELPNKGSYPS  144 (299)
T ss_dssp             --T------S-----CEEEEECSSTTCCEEEEEECTTSC-EEEEETT--TTEEEEECT-TCCE----EEEECSSTTCCEE
T ss_pred             --C------C-----cEEEEeCCCcCCCceeeEECCCCC-EEEEecC--CceEEEECC-CCCE----EEecCCCCCCCCc
Confidence              1      2     22222211 113556788999986 4444432  347999998 5663    332  22223456


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      .+.++++|+ |++.....       ..|+++|. +++...+.......       .+..+.++++|+ |+++....    
T Consensus       145 ~i~~~~~g~-l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~~~-------~~~~i~~~~~g~-l~v~~~~~----  203 (299)
T 2z2n_A          145 FITLGSDNA-LWFTENQN-------NAIGRITE-SGDITEFKIPTPAS-------GPVGITKGNDDA-LWFVEIIG----  203 (299)
T ss_dssp             EEEECTTSC-EEEEETTT-------TEEEEECT-TCCEEEEECSSTTC-------CEEEEEECTTSS-EEEEETTT----
T ss_pred             eEEEcCCCC-EEEEeCCC-------CEEEEEcC-CCcEEEeeCCCCCC-------cceeEEECCCCC-EEEEccCC----
Confidence            778999996 55554432       24999999 66665543222112       356788999998 55554322    


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCceeeccC--CCCCCCCcEEecCCceEEee
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLTW--NGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~--~~~~~~~~~~s~dg~~~~~~  617 (642)
                                  ..|+.++. .+....+..  .......++++++|+++++.
T Consensus       204 ------------~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          204 ------------NKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             ------------TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             ------------ceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence                        27999998 555544422  22344678899999888775

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.52  E-value=5.4e-05  Score=77.54  Aligned_cols=204  Identities=10%  Similarity=0.011  Sum_probs=129.1

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCC----CeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGS----KRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~----~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .++|++.++.|+++..  ....|+.+++++.    ....+..  ......+++.+.++.||++...      ..  .|..
T Consensus       116 ~l~~d~~~~~lywsD~--~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~------~~--~I~~  185 (400)
T 3p5b_L          116 ALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------LG--TVSV  185 (400)
T ss_dssp             EEEEETTTTEEEEEET--TTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT------TT--EEEE
T ss_pred             EEeeeeccCceEEEec--CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC------CC--eEEE
Confidence            5688888888888763  3467999998873    3333333  3446678888888889888732      33  4455


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWID  486 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~  486 (642)
                      ++.  +     ++     ..+.+..........+++.|.+.+|+++... ....|+++++++...    +.+.. .-...
T Consensus       186 ~~~--~-----g~-----~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~~----~~~~~~~l~~P  248 (400)
T 3p5b_L          186 ADT--K-----GV-----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI----YSLVTENIQWP  248 (400)
T ss_dssp             ECT--T-----TC-----SEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCSC----EEEECSSCSCE
T ss_pred             EeC--C-----CC-----ceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCcc----EEEEECCCCce
Confidence            555  3     22     3333333221345678999988888887642 235899999985442    44432 22345


Q ss_pred             cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC-CCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP-EGSGDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                      ..++++|++++||++....       ..|+++|+++...+.+..... ..       .+.  .+..++..||++....  
T Consensus       249 ~glavd~~~~~lY~aD~~~-------~~I~~~d~dG~~~~~~~~~~~~l~-------~P~--gl~v~~~~lywtd~~~--  310 (400)
T 3p5b_L          249 NGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILEDEKRLA-------HPF--SLAVFEDKVFWTDIIN--  310 (400)
T ss_dssp             EEEEEETTTTEEEEEETTT-------TEEEEEETTSCCCEEEEECSSTTS-------SEE--EEEEETTEEEEEESSS--
T ss_pred             EEEEEEeCCCEEEEEECCC-------CEEEEEeCCCCccEEEEeCCCCCC-------CCE--EEEEeCCEEEEecCCC--
Confidence            6789999999999987654       359999999887777654211 11       223  3444777888887543  


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEc-CCCceeecc
Q 039497          566 MAEPVSWPNQFQPYGDLYVVKL-DGSGLRRLT  596 (642)
Q Consensus       566 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~lt  596 (642)
                                    ..|++++. ++.....|.
T Consensus       311 --------------~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          311 --------------EAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             --------------CSEEEEESSSCCCCEEEE
T ss_pred             --------------CeEEEEEcCCCCceEEEe
Confidence                          28999984 454555554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.51  E-value=3e-05  Score=85.95  Aligned_cols=193  Identities=8%  Similarity=0.022  Sum_probs=128.7

Q ss_pred             ceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          353 NAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ...|..+++++.....+.. ......+.|.+.+..||++...      ...  |+.+..  +      +.........+.
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~------~~~--I~~~~l--~------g~~~~~~~~~vi  466 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------QRM--ICSTQL--D------RAHGVSSYDTVI  466 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------TTE--EEEEEC----------------CEEEE
T ss_pred             ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeecc------cee--EEEEec--c------CCCCCcceeEEE
Confidence            4678889998877666655 4566788999988889888742      333  444444  2      100000122232


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      .........+++.+.++.|+++...  ...|+++++++..    .+.|.. .......++++|.+.+||++....     
T Consensus       467 ~~~l~~P~GLAvD~~~~~LY~tD~~--~~~I~v~~ldG~~----~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~-----  535 (791)
T 3m0c_C          467 SRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----  535 (791)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSS----EEEEEECTTCCEEEEEEETTTTEEEEEECSS-----
T ss_pred             ecCCCCcceeeeeecCCcEEEEecC--CCeEEEEeCCCCe----EEEEEeCCCCCcceEEEecCCCCEEEecCCC-----
Confidence            2121455678999899999988753  3489999998544    344432 223456789999988898887432     


Q ss_pred             CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                       ...|+++++++...+.+......        .+..+++++++.+||++....                ..|++++++|.
T Consensus       536 -~~~I~~~~~dG~~~~~lv~~~l~--------~P~GLavD~~~~~LYwaD~~~----------------~~I~~~d~dG~  590 (791)
T 3m0c_C          536 -PAKIKKGGLNGVDIYSLVTENIQ--------WPNGITLDLLSGRLYWVDSKL----------------HSISSIDVNGG  590 (791)
T ss_dssp             -SCEEEEEETTSCCEEEEECSSCS--------CEEEEEEETTTTEEEEEETTT----------------TEEEEEETTSC
T ss_pred             -CCeEEEEecCCCceEEEEeCCCC--------CceEEEEecCCCeEEEEeCCC----------------CcEEEEecCCC
Confidence             24699999998877766653322        467799999999999986443                28999999998


Q ss_pred             ceeeccC
Q 039497          591 GLRRLTW  597 (642)
Q Consensus       591 ~~~~lt~  597 (642)
                      ..+.+..
T Consensus       591 ~~~~v~~  597 (791)
T 3m0c_C          591 NRKTILE  597 (791)
T ss_dssp             SCEEEEE
T ss_pred             ceEEEec
Confidence            7766654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.50  E-value=9.8e-06  Score=81.38  Aligned_cols=233  Identities=12%  Similarity=0.047  Sum_probs=129.8

Q ss_pred             ccEEcCCCCEEEEEec-CCCceeEEEEECCCCCeeEEee--------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497          334 FPSFSPDGGLIVFNHD-FELNAGIKIAKSDGSKRWTLIK--------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ  404 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~-~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  404 (642)
                      .++++|+|+.++.... ..+...|+.++  .++......        -..+..+.++++|+ |+++..+. .......  
T Consensus        21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~-~~~~~~~--   94 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGN-QSKSVPK--   94 (343)
T ss_dssp             EEEECTTSCEEEEECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHH-HHTSCCE--
T ss_pred             eEEECCCCCEEEEeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCC-CcCCCCe--
Confidence            5578999985433222 12225788888  333332211        13466789999976 66665210 0000233  


Q ss_pred             EEEEEeecCCCCCCCCCccccceEEccccC-----CCCccCcEECCCCCeEEEEeCCC-CceeEEEEECCCCccccceee
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKILTKEE-----TGNNAFPSCSPDGKFLVFRSGRS-GHKNLFVLDAVNGEFNGDIRQ  478 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~~~~~  478 (642)
                      |+.++.  +     ++.    ..+.+....     ......++++|++..++++.... +...|+++|+.+|+.   .+.
T Consensus        95 i~~~d~--~-----tg~----~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~---~r~  160 (343)
T 2qe8_A           95 LVAWDT--L-----NNQ----LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA---ARV  160 (343)
T ss_dssp             EEEEET--T-----TTE----EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE---EEE
T ss_pred             EEEEEC--C-----CCe----EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE---EEE
Confidence            444444  2     221    123332111     02345688998877776664311 345899999988874   333


Q ss_pred             CCCCC-----------------------------CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC---CCc--
Q 039497          479 LTDGP-----------------------------WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD---GSG--  524 (642)
Q Consensus       479 l~~~~-----------------------------~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~---~~~--  524 (642)
                      +..+.                             .....++|||||+.||+......       .||.++.+   .+.  
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-------~l~~~~~~~~~~~~~~  233 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-------SMYRIKSADLSNLQLT  233 (343)
T ss_dssp             CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-------EEEEEEHHHHTCTTCC
T ss_pred             ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-------eEEEEEHHHhcCCCCC
Confidence            32100                             11345799999999998876542       58888753   111  


Q ss_pred             -------eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC
Q 039497          525 -------LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW  597 (642)
Q Consensus       525 -------~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~  597 (642)
                             ...+-.   .+       .+..+++++||. |+++....                ..|++|+...++...+..
T Consensus       234 ~~~~~~~~~~~g~---~g-------~pdgia~d~~G~-l~va~~~~----------------~~V~~~d~~~G~~~~~~~  286 (343)
T 2qe8_A          234 DAELGSKIERYSE---KP-------ICDGISIDKDHN-IYVGDLAH----------------SAIGVITSADRAYKLLVT  286 (343)
T ss_dssp             HHHHHTTCEEEEE---CC-------SCSCEEECTTCC-EEEEEGGG----------------TEEEEEETTTTEEEEEEE
T ss_pred             hhhhhcceEeccc---CC-------CCceEEECCCCC-EEEEccCC----------------CeEEEEECCCCCEEEEEE
Confidence                   111111   11       345689999986 55554332                289999983445544443


Q ss_pred             C--CCCCCCcEEecCCceEEeecCC
Q 039497          598 N--GYENGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       598 ~--~~~~~~~~~s~dg~~~~~~~~~  620 (642)
                      .  ......++|+++|+++++..+.
T Consensus       287 ~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          287 DEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             CGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             CCceecCCeeEECCCCcEEEEeCcc
Confidence            2  2335688999999888776544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.50  E-value=6.1e-05  Score=73.43  Aligned_cols=215  Identities=11%  Similarity=0.093  Sum_probs=128.0

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      +.++++|+ |++..  .....|++++.+ ++......   ...+..+.+.++|+ |+++..      ...  .|+.++. 
T Consensus        67 i~~~~~g~-l~v~~--~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~--~i~~~~~-  132 (300)
T 2qc5_A           67 LIVSSLGD-IWFTE--NGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-IWFTQL------NGD--RIGKLTA-  132 (300)
T ss_dssp             EEECTTSC-EEEEE--TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-EEEEET------TTT--EEEEECT-
T ss_pred             EEECCCCC-EEEEe--cCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-EEEEcc------CCC--eEEEECC-
Confidence            46678887 44433  224678999988 55444432   24567788888887 555542      122  3455544 


Q ss_pred             cCCCCCCCCCccccceEEc--cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC--CCCCccc
Q 039497          412 LDPSDDNNREEIPCDVKIL--TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT--DGPWIDT  487 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~--~~~~~~~  487 (642)
                             .+     ....+  .... .....+.+.++|+ |+++...  ...|++++. +++.    ..+.  .......
T Consensus       133 -------~g-----~~~~~~~~~~~-~~~~~i~~d~~g~-l~v~~~~--~~~i~~~~~-~g~~----~~~~~~~~~~~~~  191 (300)
T 2qc5_A          133 -------DG-----TIYEYDLPNKG-SYPAFITLGSDNA-LWFTENQ--NNSIGRITN-TGKL----EEYPLPTNAAAPV  191 (300)
T ss_dssp             -------TS-----CEEEEECSSTT-CCEEEEEECTTSS-EEEEETT--TTEEEEECT-TCCE----EEEECSSTTCCEE
T ss_pred             -------CC-----CEEEccCCCCC-CCceeEEECCCCC-EEEEecC--CCeEEEECC-CCcE----EEeeCCCCCCCcc
Confidence                   22     22222  2112 3456788999998 6555542  347999998 5664    3332  2223445


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      .+.++++|+ |++.....       ..|++++. .++...+.......       .+..+.++++|+ |+++....    
T Consensus       192 ~i~~d~~g~-l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~~~-------~~~~i~~d~~g~-l~v~~~~~----  250 (300)
T 2qc5_A          192 GITSGNDGA-LWFVEIMG-------NKIGRITT-TGEISEYDIPTPNA-------RPHAITAGKNSE-IWFTEWGA----  250 (300)
T ss_dssp             EEEECTTSS-EEEEETTT-------TEEEEECT-TCCEEEEECSSTTC-------CEEEEEECSTTC-EEEEETTT----
T ss_pred             eEEECCCCC-EEEEccCC-------CEEEEEcC-CCcEEEEECCCCCC-------CceEEEECCCCC-EEEeccCC----
Confidence            678899986 55555433       24999998 44544443221122       456789999998 65555322    


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEecCCceEEeec
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                                  ..|+.++.++ ....+.  ........++++++|+++++..
T Consensus       251 ------------~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          251 ------------NQIGRITNDN-TIQEYQLQTENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             ------------TEEEEECTTS-CEEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred             ------------CeEEEECCCC-cEEEEECCccCCccceeEeCCCCCEEEEcc
Confidence                        2799998854 444332  2234567889999999888765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.50  E-value=5.5e-05  Score=83.89  Aligned_cols=206  Identities=10%  Similarity=0.015  Sum_probs=130.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCC----CeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGS----KRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~----~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .+.+.+.+.+|++...  ....|+++++++.    ....+..  ......+++.+.++.||++...      ..  .|..
T Consensus       428 gl~~d~~~~~lY~sD~--~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~------~~--~I~v  497 (791)
T 3m0c_C          428 ALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------LG--TVSV  497 (791)
T ss_dssp             EEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------TT--EEEE
T ss_pred             EEeecccCCeeEEeec--cceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC------CC--eEEE
Confidence            4577887777877663  3467999998874    2233332  3456778999999999988742      33  4555


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWID  486 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~  486 (642)
                      ++.  +     +.     ..+.|..........+++.|.+.+|+++.... ...|+++++++..    .+.|.. .-...
T Consensus       498 ~~l--d-----G~-----~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~-~~~I~~~~~dG~~----~~~lv~~~l~~P  560 (791)
T 3m0c_C          498 ADT--K-----GV-----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVD----IYSLVTENIQWP  560 (791)
T ss_dssp             EET--T-----SS-----SEEEEEECTTCCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSCC----EEEEECSSCSCE
T ss_pred             EeC--C-----CC-----eEEEEEeCCCCCcceEEEecCCCCEEEecCCC-CCeEEEEecCCCc----eEEEEeCCCCCc
Confidence            555  3     22     33444332223466789999988998886422 2589999998544    344433 22345


Q ss_pred             cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497          487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM  566 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~  566 (642)
                      ..+++++.+++||++....       ..|+++++++...+.+......        ....+++..++.+||++....   
T Consensus       561 ~GLavD~~~~~LYwaD~~~-------~~I~~~d~dG~~~~~v~~~~~~--------l~~P~glav~~~~lYwtD~~~---  622 (791)
T 3m0c_C          561 NGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILEDEKR--------LAHPFSLAVFEDKVFWTDIIN---  622 (791)
T ss_dssp             EEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEEECTTT--------TSSEEEEEEETTEEEEEETTT---
T ss_pred             eEEEEecCCCeEEEEeCCC-------CcEEEEecCCCceEEEecCCCc--------cCCCCEEEEeCCEEEEEECCC---
Confidence            6779999999999987543       3599999999887777643211        112234455777888887543   


Q ss_pred             cCCCCCCCCCCCCCcEEEEEcC-CCceeeccC
Q 039497          567 AEPVSWPNQFQPYGDLYVVKLD-GSGLRRLTW  597 (642)
Q Consensus       567 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lt~  597 (642)
                                   ..|++++.. +...+.|..
T Consensus       623 -------------~~I~~~dk~tG~~~~~l~~  641 (791)
T 3m0c_C          623 -------------EAIFSANRLTGSDVNLLAE  641 (791)
T ss_dssp             -------------TEEEEEETTTCCCCEEEEC
T ss_pred             -------------CEEEEEeCCCCcceEEeec
Confidence                         289999854 444555543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.45  E-value=4.7e-05  Score=74.26  Aligned_cols=216  Identities=12%  Similarity=0.128  Sum_probs=126.2

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      .+.++++|+ +++..  .....|++++.++ +...+..   ...+..+.++|+|+ |+++..      ....+  +.++.
T Consensus        61 ~i~~~~~g~-l~v~~--~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~~i--~~~d~  127 (299)
T 2z2n_A           61 CLTISSDGE-VWFTE--NAANKIGRITKKG-IIKEYTLPNPDSAPYGITEGPNGD-IWFTEM------NGNRI--GRITD  127 (299)
T ss_dssp             EEEECTTSC-EEEEE--TTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECTTSC-EEEEET------TTTEE--EEECT
T ss_pred             eEEECCCCC-EEEeC--CCCCeEEEECCCC-cEEEEeCCCcCCCceeeEECCCCC-EEEEec------CCceE--EEECC
Confidence            346788887 44433  2245788888873 3333332   33567788899886 555542      13344  44433


Q ss_pred             ecCCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC--CCCCCccc
Q 039497          411 QLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL--TDGPWIDT  487 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l--~~~~~~~~  487 (642)
                        +      +     ....+... .......+++++||+ ++++..  ....|++++. +|+.    ..+  ........
T Consensus       128 --~------g-----~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~-~g~~----~~~~~~~~~~~~~  186 (299)
T 2z2n_A          128 --D------G-----KIREYELPNKGSYPSFITLGSDNA-LWFTEN--QNNAIGRITE-SGDI----TEFKIPTPASGPV  186 (299)
T ss_dssp             --T------C-----CEEEEECSSTTCCEEEEEECTTSC-EEEEET--TTTEEEEECT-TCCE----EEEECSSTTCCEE
T ss_pred             --C------C-----CEEEecCCCCCCCCceEEEcCCCC-EEEEeC--CCCEEEEEcC-CCcE----EEeeCCCCCCcce
Confidence              1      2     22222211 113456788999985 555543  2347999998 6764    432  22223445


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      .+.++++|+ |++.....       ..|++++. +++...+.......       .+..+.++++|+ |+++....    
T Consensus       187 ~i~~~~~g~-l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~~~-------~~~~i~~~~~g~-l~v~~~~~----  245 (299)
T 2z2n_A          187 GITKGNDDA-LWFVEIIG-------NKIGRITT-SGEITEFKIPTPNA-------RPHAITAGAGID-LWFTEWGA----  245 (299)
T ss_dssp             EEEECTTSS-EEEEETTT-------TEEEEECT-TCCEEEEECSSTTC-------CEEEEEECSTTC-EEEEETTT----
T ss_pred             eEEECCCCC-EEEEccCC-------ceEEEECC-CCcEEEEECCCCCC-------CceeEEECCCCC-EEEeccCC----
Confidence            678999998 55555432       24999999 66655543222122       456789999998 55554222    


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEecCCceEEeec
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                                  ..|+.++.++ ....+.  ........+++ ++|+++++..
T Consensus       246 ------------~~i~~~d~~g-~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~  284 (299)
T 2z2n_A          246 ------------NKIGRLTSNN-IIEEYPIQIKSAEPHGICF-DGETIWFAME  284 (299)
T ss_dssp             ------------TEEEEEETTT-EEEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred             ------------ceEEEECCCC-ceEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence                        2799999854 444442  22334567788 9998888764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.42  E-value=7.8e-05  Score=72.68  Aligned_cols=217  Identities=12%  Similarity=0.085  Sum_probs=127.3

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      .+.++++|+ |.+..  .....|.+++.+ ++...+..   ...+..+.++++|+ |+++..      ...  .|+.++.
T Consensus        24 ~i~~d~~g~-l~v~~--~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~--~v~~~d~   90 (300)
T 2qc5_A           24 GITSSEDGK-VWFTQ--HKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTEN------GAN--KIGKLSK   90 (300)
T ss_dssp             EEEECTTSC-EEEEE--TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEET------TTT--EEEEECT
T ss_pred             eeeECCCCC-EEEEc--CCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEec------CCC--eEEEECC
Confidence            346788887 44433  234678899988 55444433   24567788888887 555542      123  3444544


Q ss_pred             ecCCCCCCCCCccccceEEcccc-CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee--CCCCCCccc
Q 039497          411 QLDPSDDNNREEIPCDVKILTKE-ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ--LTDGPWIDT  487 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~--l~~~~~~~~  487 (642)
                              .+     ....+... .......+++.++|+ |+++...  ...|++++.+ |+.    ..  +........
T Consensus        91 --------~g-----~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~~~~-g~~----~~~~~~~~~~~~~  149 (300)
T 2qc5_A           91 --------KG-----GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLN--GDRIGKLTAD-GTI----YEYDLPNKGSYPA  149 (300)
T ss_dssp             --------TS-----CEEEEECSSTTCCEEEEEECSTTC-EEEEETT--TTEEEEECTT-SCE----EEEECSSTTCCEE
T ss_pred             --------CC-----CeEEecCCCCCCCCccceECCCCC-EEEEccC--CCeEEEECCC-CCE----EEccCCCCCCCce
Confidence                    22     22322211 113456678899986 4444432  3379999988 664    33  222223456


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCccc
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMA  567 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~  567 (642)
                      .+.++++|+ |++.....       ..|++++. .++...+.......       .+..+.++++|+ |+++....    
T Consensus       150 ~i~~d~~g~-l~v~~~~~-------~~i~~~~~-~g~~~~~~~~~~~~-------~~~~i~~d~~g~-l~v~~~~~----  208 (300)
T 2qc5_A          150 FITLGSDNA-LWFTENQN-------NSIGRITN-TGKLEEYPLPTNAA-------APVGITSGNDGA-LWFVEIMG----  208 (300)
T ss_dssp             EEEECTTSS-EEEEETTT-------TEEEEECT-TCCEEEEECSSTTC-------CEEEEEECTTSS-EEEEETTT----
T ss_pred             eEEECCCCC-EEEEecCC-------CeEEEECC-CCcEEEeeCCCCCC-------CcceEEECCCCC-EEEEccCC----
Confidence            678999998 66665432       24999998 45555443222112       456788999996 55554332    


Q ss_pred             CCCCCCCCCCCCCcEEEEEcCCCceeecc--CCCCCCCCcEEecCCceEEeec
Q 039497          568 EPVSWPNQFQPYGDLYVVKLDGSGLRRLT--WNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       568 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lt--~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                                  ..|++++.++ ....+.  ........++++++|+++++..
T Consensus       209 ------------~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  248 (300)
T 2qc5_A          209 ------------NKIGRITTTG-EISEYDIPTPNARPHAITAGKNSEIWFTEW  248 (300)
T ss_dssp             ------------TEEEEECTTC-CEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             ------------CEEEEEcCCC-cEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence                        2699998844 443332  2223446788999998887763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.35  E-value=3.1e-05  Score=72.64  Aligned_cols=188  Identities=13%  Similarity=0.109  Sum_probs=113.1

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      +.|+ |+ +|+......+...|.++|+++++...... .......-..+++++|+.+..      ..+.+.+++...   
T Consensus        48 L~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw------~~~~v~v~D~~t---  116 (262)
T 3nol_A           48 FFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW------KNGLGFVWNIRN---  116 (262)
T ss_dssp             EEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSSEEEEEETTT---
T ss_pred             EEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe------eCCEEEEEECcc---
Confidence            4566 54 55554433456789999999998655444 444455556678889988874      255566655533   


Q ss_pred             CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--CCc---ccc
Q 039497          414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PWI---DTM  488 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~---~~~  488 (642)
                            ..    ....+....    ....+++||+.|+.+.   +...|+.+|..+.+.   ...+.-.  ...   .+.
T Consensus       117 ------~~----~~~ti~~~~----eG~glt~dg~~L~~Sd---Gs~~i~~iDp~T~~v---~~~I~V~~~g~~~~~lNE  176 (262)
T 3nol_A          117 ------LR----QVRSFNYDG----EGWGLTHNDQYLIMSD---GTPVLRFLDPESLTP---VRTITVTAHGEELPELNE  176 (262)
T ss_dssp             ------CC----EEEEEECSS----CCCCEEECSSCEEECC---SSSEEEEECTTTCSE---EEEEECEETTEECCCEEE
T ss_pred             ------Cc----EEEEEECCC----CceEEecCCCEEEEEC---CCCeEEEEcCCCCeE---EEEEEeccCCccccccce
Confidence                  21    344444322    2345668998876553   456899999998875   4444331  111   223


Q ss_pred             eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCC---CCcccccccceEEcCCCCEEEEEEec
Q 039497          489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGS---GDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~---~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      +.|. +| .|+...-.       ...|.++|.++++........ ....   ........+.++|+|++++|+++...
T Consensus       177 Le~~-~G-~lyan~w~-------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          177 LEWV-DG-EIFANVWQ-------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEE-TT-EEEEEETT-------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             eEEE-CC-EEEEEEcc-------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            5676 67 46654432       235999999999876655431 1000   00000134679999999999888754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.35  E-value=5.1e-06  Score=91.58  Aligned_cols=205  Identities=10%  Similarity=-0.001  Sum_probs=124.2

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCC----CCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDG----SKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~----~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      ..++|++++.+|+++..  ....|+++++++    .....+..  ......+++.+.+..||++..      ....  |+
T Consensus       409 ~gla~d~~~~~Ly~sD~--~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~------~~~~--I~  478 (699)
T 1n7d_A          409 VALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS------VLGT--VS  478 (699)
T ss_dssp             CCCEEETTTTEEEECCT--TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCT------TTSC--EE
T ss_pred             EEEccccccCeEEEEec--CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEec------cCCe--EE
Confidence            45789988887777543  346799999886    33222222  123456777777777877652      2334  44


Q ss_pred             EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCc
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWI  485 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~  485 (642)
                      .++.  +     ++     ..+.+..........+++.|++.+|+++... ....|+++++++...    +.+. ..-..
T Consensus       479 v~d~--d-----g~-----~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~----~~l~~~~l~~  541 (699)
T 1n7d_A          479 VADT--K-----GV-----KRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI----YSLVTENIQW  541 (699)
T ss_dssp             EEBS--S-----SC-----CEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCC----CEESCSSCSS
T ss_pred             EEec--C-----CC-----ceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCe----eEEEeCCCCC
Confidence            4544  3     22     3333333221445678999988888876532 225899998874332    3332 22234


Q ss_pred             ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      ...++|+|++++||++....       ..|+++++++...+.+.... ...       .+..+++  |+..||++.... 
T Consensus       542 PnGlavd~~~~~LY~aD~~~-------~~I~~~d~dG~~~~~~~~~~~~~~-------~P~glav--d~~~lywtd~~~-  604 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILEDEKRLA-------HPFSLAV--FEDKVFWTDIIN-  604 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTT-------TEEEEECSSSSCCEEECCCSSSCS-------SCCCCEE--ETTEEEEECSTT-
T ss_pred             ccEEEEeccCCEEEEEecCC-------CeEEEEccCCCceEEEEecCCcCC-------CceEeEE--ECCEEEEEeCCC-
Confidence            56789999999999987654       35999999987766665321 111       2334544  566888877433 


Q ss_pred             cccCCCCCCCCCCCCCcEEEEEcCCCc-eeecc
Q 039497          565 VMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLT  596 (642)
Q Consensus       565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt  596 (642)
                                     ..|++++..+++ ++.|.
T Consensus       605 ---------------~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          605 ---------------EAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ---------------TCEEEEETTTEEEEECCC
T ss_pred             ---------------CeEEEEEccCCCceEEee
Confidence                           289999976554 44443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.34  E-value=1.9e-05  Score=74.94  Aligned_cols=190  Identities=13%  Similarity=0.039  Sum_probs=109.4

Q ss_pred             ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497          375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS  454 (642)
Q Consensus       375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~  454 (642)
                      ...+.|+||+ .|+.++..    .+...+..+++..         +.    ....+.-..  ......+..+|+.|+...
T Consensus        23 ~~Gl~~~~dg-~Lyvstg~----~~~s~v~~iD~~t---------g~----v~~~i~l~~--~~fgeGi~~~g~~lyv~t   82 (266)
T 2iwa_A           23 TQGLVYAEND-TLFESTGL----YGRSSVRQVALQT---------GK----VENIHKMDD--SYFGEGLTLLNEKLYQVV   82 (266)
T ss_dssp             EEEEEECSTT-EEEEEECS----TTTCEEEEEETTT---------CC----EEEEEECCT--TCCEEEEEEETTEEEEEE
T ss_pred             cccEEEeCCC-eEEEECCC----CCCCEEEEEECCC---------CC----EEEEEecCC--CcceEEEEEeCCEEEEEE
Confidence            4678899985 66666521    1234444444432         31    233332222  122234555688888887


Q ss_pred             CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497          455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE  534 (642)
Q Consensus       455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~  534 (642)
                      ..+  ..++++|.++.+.   +..+...  ......+++||++|+.+...        ..|+++|.++.+...-..-+..
T Consensus        83 ~~~--~~v~viD~~t~~v---~~~i~~g--~~~g~glt~Dg~~l~vs~gs--------~~l~viD~~t~~v~~~I~Vg~~  147 (266)
T 2iwa_A           83 WLK--NIGFIYDRRTLSN---IKNFTHQ--MKDGWGLATDGKILYGSDGT--------SILYEIDPHTFKLIKKHNVKYN  147 (266)
T ss_dssp             TTC--SEEEEEETTTTEE---EEEEECC--SSSCCEEEECSSSEEEECSS--------SEEEEECTTTCCEEEEEECEET
T ss_pred             ecC--CEEEEEECCCCcE---EEEEECC--CCCeEEEEECCCEEEEECCC--------CeEEEEECCCCcEEEEEEECCC
Confidence            644  4899999998876   5666543  11235688899988876532        3599999988665433221111


Q ss_pred             CCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-eccCCC-------------C
Q 039497          535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-RLTWNG-------------Y  600 (642)
Q Consensus       535 ~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~-------------~  600 (642)
                      +   .+......+.|. || .||......                ..|.++|..++++. .+...+             .
T Consensus       148 ~---~p~~~~nele~~-dg-~lyvn~~~~----------------~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~  206 (266)
T 2iwa_A          148 G---HRVIRLNELEYI-NG-EVWANIWQT----------------DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDID  206 (266)
T ss_dssp             T---EECCCEEEEEEE-TT-EEEEEETTS----------------SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCC
T ss_pred             C---cccccceeEEEE-CC-EEEEecCCC----------------CeEEEEECCCCcEEEEEECCCcccccccccccccC
Confidence            1   000023456777 77 566444322                28999999888743 343221             1


Q ss_pred             CCCCcEEecCC-ceEEeecCC
Q 039497          601 ENGTPAWHPGN-QLDLGKLRL  620 (642)
Q Consensus       601 ~~~~~~~s~dg-~~~~~~~~~  620 (642)
                      ....++|+|++ ++|++...-
T Consensus       207 v~nGIa~~~~~~~lfVTgk~~  227 (266)
T 2iwa_A          207 VLNGIAWDQENKRIFVTGKLW  227 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTC
T ss_pred             ceEEEEEcCCCCEEEEECCCC
Confidence            22578999998 566776543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.34  E-value=4.1e-06  Score=92.32  Aligned_cols=207  Identities=7%  Similarity=0.004  Sum_probs=125.7

Q ss_pred             ceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          353 NAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ...|+++++++.+...+.. ...+..++|++++..||++..      ....+  +.++.  ++..  .+.    ....+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~------~~~~I--~~~~~--~g~~--~~~----~~~~~i  448 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMI--CSTQL--DRAH--GVS----SYDTVI  448 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCT------TTTSB--EEEES--CCCC--C-C----CCCCBC
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEec------CCCeE--EEEec--CCCC--CCc----ceEEEE
Confidence            3578888988876554443 456778899999888888763      23344  44444  2100  001    111121


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      .........+++.+.++.|+++..  +...|+++++++..    .+.+.. .......++++|++.+||++....     
T Consensus       449 ~~~~~~P~glavD~~~g~LY~tD~--~~~~I~v~d~dg~~----~~~l~~~~~~~P~giavDp~~g~ly~td~~~-----  517 (699)
T 1n7d_A          449 SRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVK----RKTLFREQGSKPRAIVVDPVHGFMYWTDWGT-----  517 (699)
T ss_dssp             CSCC--CCCEECCCSSSBCEECCT--TTSCEEEEBSSSCC----EEEECCCSSCCCCCEECCSSSSCCEECCCSS-----
T ss_pred             eCCCCCcceEEEEeeCCcEEEEec--cCCeEEEEecCCCc----eEEEEeCCCCCcceEEEccCCCcEEEcccCC-----
Confidence            111123456788877778877654  34579999988554    344433 223446779999888888776432     


Q ss_pred             CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                       ...|+++++++...+.+......        .+..++|++++++||++....                ..|+++++++.
T Consensus       518 -~~~I~~~~~dG~~~~~l~~~~l~--------~PnGlavd~~~~~LY~aD~~~----------------~~I~~~d~dG~  572 (699)
T 1n7d_A          518 -PAKIKKGGLNGVDIYSLVTENIQ--------WPNGITLDLLSGRLYWVDSKL----------------HSISSIDVNGG  572 (699)
T ss_dssp             -SCCEEBCCSSSCCCCEESCSSCS--------SCCCEEECTTTCCEEEEETTT----------------TEEEEECSSSS
T ss_pred             -CCeEEEEeCCCCCeeEEEeCCCC--------CccEEEEeccCCEEEEEecCC----------------CeEEEEccCCC
Confidence             23599999988766555432221        356799999999999887543                28999999887


Q ss_pred             ceeeccCCC---CCCCCcEEecCC
Q 039497          591 GLRRLTWNG---YENGTPAWHPGN  611 (642)
Q Consensus       591 ~~~~lt~~~---~~~~~~~~s~dg  611 (642)
                      ..+.+....   .....+++..+.
T Consensus       573 ~~~~~~~~~~~~~~P~glavd~~~  596 (699)
T 1n7d_A          573 NRKTILEDEKRLAHPFSLAVFEDK  596 (699)
T ss_dssp             CCEEECCCSSSCSSCCCCEEETTE
T ss_pred             ceEEEEecCCcCCCceEeEEECCE
Confidence            655554321   233456665553

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=0.00022  Score=73.63  Aligned_cols=158  Identities=14%  Similarity=0.083  Sum_probs=100.8

Q ss_pred             CccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          333 SFPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       333 ~~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ..++++| ++..|+++...   ..|++++++++....+.. ......++|+++|+.|+++...    .......++.+..
T Consensus       140 ~~lavdp~~~g~Lyv~d~~---~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~----~~~~~~~v~~~~~  212 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQ---HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQ----NNNDRPNNYILTR  212 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBT---EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECC----SCTTSEEEEEEEG
T ss_pred             CEEEECCCCCCeEEEEeCC---CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCC----CCcccceEEEEeC
Confidence            3568888 45666665542   889999999887666655 4457789999999988888742    1122334454544


Q ss_pred             ecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--CCcccc
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTM  488 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~  488 (642)
                        +     ++..   ....+...  .....++++|++.+|+++....  .+|++++.+++..    ..+...  ......
T Consensus       213 --~-----g~~~---~~~~l~~~--~~p~giavdp~~g~lyv~d~~~--~~V~~~~~~~~~~----~~~~~~~~~~~P~g  274 (430)
T 3tc9_A          213 --E-----SGFK---VITELTKG--QNCNGAETHPINGELYFNSWNA--GQVFRYDFTTQET----TPLFTIQDSGWEFH  274 (430)
T ss_dssp             --G-----GTSC---SEEEEEEC--SSCCCEEECTTTCCEEEEETTT--TEEEEEETTTTEE----EEEEECSSSSCCEE
T ss_pred             --C-----Ccee---eeeeeccC--CCceEEEEeCCCCEEEEEECCC--CEEEEEECCCCcE----EEEEEcCCCCccee
Confidence              2     1110   11223222  3456788999666787776533  4899999987652    233211  123457


Q ss_pred             eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      ++|+|+|++||+......       .|++++.++
T Consensus       275 ia~~pdG~~lyv~d~~~~-------~I~~~~~d~  301 (430)
T 3tc9_A          275 IQFHPSGNYAYIVVVNQH-------YILRSDYDW  301 (430)
T ss_dssp             EEECTTSSEEEEEETTTT-------EEEEEEEET
T ss_pred             EEEcCCCCEEEEEECCCC-------EEEEEeCCc
Confidence            899999998888876543       488887764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.25  E-value=3.5e-05  Score=76.57  Aligned_cols=171  Identities=10%  Similarity=0.044  Sum_probs=98.6

Q ss_pred             CceeEEEEECCC--CCeeEEeecC--------Cceeeeeec--CCC-EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCC
Q 039497          352 LNAGIKIAKSDG--SKRWTLIKDR--------TAFYNSWSP--TEK-HVIYTSTGPIFQSERATVQIARVSFQLDPSDDN  418 (642)
Q Consensus       352 ~~~~l~~~d~~~--~~~~~l~~~~--------~~~~~~~sp--dg~-~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  418 (642)
                      ....|+++|.++  .+.+.+...+        ....+.+.+  ||+ +|+++...    .....+.++.++.  +     
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~----~~~s~ielf~~d~--~-----  149 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP----GSSSTVEVFKFQE--E-----  149 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS----TTCCEEEEEEEET--T-----
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC----CCCCeEEEEEEEC--C-----
Confidence            457899999874  3444443321        344555555  566 45555542    2467888999987  3     


Q ss_pred             CCCccccceEEc---cccCCCCccCcEECCCCCeEEEEeC---------------CCCceeEEEEECCCCccccceeeCC
Q 039497          419 NREEIPCDVKIL---TKEETGNNAFPSCSPDGKFLVFRSG---------------RSGHKNLFVLDAVNGEFNGDIRQLT  480 (642)
Q Consensus       419 ~~~~~~~~~~~l---~~~~~~~~~~~~~SpDg~~l~~~~~---------------~~g~~~l~~~d~~~g~~~~~~~~l~  480 (642)
                       +.    ....+   ..........+.+.++|+. +++..               ......||+++..  +    ++.+.
T Consensus       150 -~~----~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~----~~~~~  217 (355)
T 3sre_A          150 -EK----SLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D----VRVVA  217 (355)
T ss_dssp             -TT----EEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C----CEEEE
T ss_pred             -CC----EEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEEEEECC--e----EEEee
Confidence             21    22222   2222234456788899864 33332               1134589999863  4    35544


Q ss_pred             CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-CceEEeeecCCCCCCCcccccccceEEcC-CCCEEEE
Q 039497          481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-SGLRRIHVAGPEGSGDVDRERINHVCFSA-DGEWLLF  558 (642)
Q Consensus       481 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~S~-Dg~~l~~  558 (642)
                      ..-...+.++|||||+.||++....       ..|++++++. +...........+       .+..+++.+ +|. |+.
T Consensus       218 ~~l~~pNGia~spDg~~lYvadt~~-------~~I~~~~~~~~g~l~~~~~~~~~g-------~PDGi~vD~e~G~-lwv  282 (355)
T 3sre_A          218 EGFDFANGINISPDGKYVYIAELLA-------HKIHVYEKHANWTLTPLRVLSFDT-------LVDNISVDPVTGD-LWV  282 (355)
T ss_dssp             EEESSEEEEEECTTSSEEEEEEGGG-------TEEEEEEECTTSCEEEEEEEECSS-------EEEEEEECTTTCC-EEE
T ss_pred             cCCcccCcceECCCCCEEEEEeCCC-------CeEEEEEECCCCcEecCEEEeCCC-------CCceEEEeCCCCc-EEE
Confidence            4334557889999999999998754       3499998863 3332211111223       456788888 587 444


Q ss_pred             EE
Q 039497          559 TA  560 (642)
Q Consensus       559 ~~  560 (642)
                      +.
T Consensus       283 a~  284 (355)
T 3sre_A          283 GC  284 (355)
T ss_dssp             EE
T ss_pred             Ee
Confidence            33

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.25  E-value=0.00023  Score=70.44  Aligned_cols=234  Identities=9%  Similarity=-0.037  Sum_probs=131.3

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---------------------cCCceeeeeecCCCEEEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---------------------DRTAFYNSWSPTEKHVIYTS  391 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---------------------~~~~~~~~~spdg~~l~~~~  391 (642)
                      ..+.|+++|+. +|+.  .....|+.++.+++....+..                     ......+++.+++..|+++.
T Consensus        22 ~~i~~d~~g~~-l~v~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           22 NSFTFDSTNKG-FYTS--VQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCEECCTTCSS-EEEE--CTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             eEEEEcCCCCE-EEEE--cCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            45688899873 4443  234679999988776554432                     12345678887444577765


Q ss_pred             cCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc----CCCCccCcEECC-CCCeEEEEeCC----------
Q 039497          392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE----ETGNNAFPSCSP-DGKFLVFRSGR----------  456 (642)
Q Consensus       392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~Sp-Dg~~l~~~~~~----------  456 (642)
                      .       ...  ++.++.  +     ++     ..+.+...    .......+++.| ||+ |+++...          
T Consensus        99 ~-------~~~--i~~~d~--~-----~g-----~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           99 C-------YYH--LSVVGS--E-----GG-----HATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             T-------TTE--EEEECT--T-----CE-----ECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHH
T ss_pred             C-------CCC--EEEEeC--C-----CC-----EEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccce
Confidence            3       122  444544  2     12     22333211    112345688999 885 5555432          


Q ss_pred             -----CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC---ceEEe
Q 039497          457 -----SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS---GLRRI  528 (642)
Q Consensus       457 -----~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~---~~~~l  528 (642)
                           .....|++++.++++.    ..+.........++|+|||+.|++.....       ..|+++++++.   ..+.+
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~~----~~~~~~~~~p~gia~~~dg~~lyv~d~~~-------~~I~~~~~~~~~~~~~~~~  225 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKET----TLLLKELHVPGGAEVSADSSFVLVAEFLS-------HQIVKYWLEGPKKGTAEVL  225 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTEE----EEEEEEESCCCEEEECTTSSEEEEEEGGG-------TEEEEEESSSTTTTCEEEE
T ss_pred             ehcccCCCceEEEEeCCCCEE----EEeccCCccCcceEECCCCCEEEEEeCCC-------CeEEEEECCCCcCCccceE
Confidence                 1235799999987763    43322222345679999999888886643       24999999863   33333


Q ss_pred             eecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC----CCCC
Q 039497          529 HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY----ENGT  604 (642)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~----~~~~  604 (642)
                      ..  ..+        +..+.++++|+ |+++.......     .+ .+.....|++++.++.....+....+    ....
T Consensus       226 ~~--~~g--------P~gi~~d~~G~-l~va~~~~~~~-----~~-~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~  288 (322)
T 2fp8_A          226 VK--IPN--------PGNIKRNADGH-FWVSSSEELDG-----NM-HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQ  288 (322)
T ss_dssp             EE--CSS--------EEEEEECTTSC-EEEEEEEETTS-----ST-TSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCE
T ss_pred             Ee--CCC--------CCCeEECCCCC-EEEEecCcccc-----cc-cCCCccEEEEECCCCCEEEEEECCCCCccccceE
Confidence            22  111        35688999997 55554331000     00 00001278999988765655554322    2233


Q ss_pred             cEEecCCceEEeecCC
Q 039497          605 PAWHPGNQLDLGKLRL  620 (642)
Q Consensus       605 ~~~s~dg~~~~~~~~~  620 (642)
                      +.+ .+++++++....
T Consensus       289 ~~~-~~g~L~v~~~~~  303 (322)
T 2fp8_A          289 IQE-HDGLLYIGTLFH  303 (322)
T ss_dssp             EEE-ETTEEEEECSSC
T ss_pred             EEE-eCCEEEEeecCC
Confidence            444 578888876443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.24  E-value=0.00015  Score=67.36  Aligned_cols=198  Identities=12%  Similarity=0.086  Sum_probs=118.8

Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      +.|++  .+|+......+...|..+|+++++...... ..........+++++|+....      ..+.+.+++...   
T Consensus        26 L~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw------~~~~v~v~D~~t---   94 (243)
T 3mbr_X           26 LFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW------RNHEGFVYDLAT---   94 (243)
T ss_dssp             EEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSSEEEEEETTT---
T ss_pred             EEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEe------eCCEEEEEECCc---
Confidence            35654  556555544566799999999998765544 445555556667888888873      255555555432   


Q ss_pred             CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--CC---cccc
Q 039497          414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PW---IDTM  488 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~---~~~~  488 (642)
                            ..    ....+....    ....+++||+.|+.+ +  +...|+.+|.++.+.   ...+.-.  ..   ..+.
T Consensus        95 ------l~----~~~ti~~~~----~Gwglt~dg~~L~vS-d--gs~~l~~iDp~t~~~---~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           95 ------LT----PRARFRYPG----EGWALTSDDSHLYMS-D--GTAVIRKLDPDTLQQ---VGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             ------TE----EEEEEECSS----CCCEEEECSSCEEEE-C--SSSEEEEECTTTCCE---EEEEECEETTEECCCEEE
T ss_pred             ------Cc----EEEEEeCCC----CceEEeeCCCEEEEE-C--CCCeEEEEeCCCCeE---EEEEEEccCCccccccee
Confidence                  11    334443322    234667899887655 3  456899999998875   4444332  11   2233


Q ss_pred             eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCC----CcccccccceEEcCCCCEEEEEEecC
Q 039497          489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSG----DVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~----~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      +.|. +|+ |+...-.       ...|.++|.++++........ .....    .......+.++++|++++|+++... 
T Consensus       155 Le~~-~G~-lyanvw~-------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~-  224 (243)
T 3mbr_X          155 LEWV-NGE-LLANVWL-------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR-  224 (243)
T ss_dssp             EEEE-TTE-EEEEETT-------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT-
T ss_pred             eEEe-CCE-EEEEECC-------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC-
Confidence            4555 664 5544322       235999999999876554421 10000    0001134679999999999888754 


Q ss_pred             CcccCCCCCCCCCCCCCcEEEEEcC
Q 039497          564 AVMAEPVSWPNQFQPYGDLYVVKLD  588 (642)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~l~~~~~~  588 (642)
                              ||       .||.+.+.
T Consensus       225 --------wp-------~~~~v~~~  234 (243)
T 3mbr_X          225 --------WP-------MLYEIRLT  234 (243)
T ss_dssp             --------CS-------EEEEEEEC
T ss_pred             --------CC-------cEEEEEEe
Confidence                    33       78887654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.19  E-value=0.0004  Score=71.77  Aligned_cols=158  Identities=9%  Similarity=0.044  Sum_probs=96.6

Q ss_pred             CccEEcCC--CCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          333 SFPSFSPD--GGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       333 ~~~~~spd--g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      ..++|+|+  +..|++....   ..|++++++++....+.. ......++++++|+ |+++...    .......++.+.
T Consensus       142 ~gvavd~~s~~g~Lyv~D~~---~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~----~~~~~~gv~~~~  213 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWVGQR---DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQ----SSDTNTGIYLFT  213 (433)
T ss_dssp             CEEEECTTTTTCEEEEECBT---SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECC----SCTTSEEEEEEC
T ss_pred             ceEEEccccCCCEEEEEeCC---CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCC----CCcccceEEEEE
Confidence            35688985  4556665432   789999998887666654 44577899999999 7777632    011123344443


Q ss_pred             eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-C-CCccc
Q 039497          410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-G-PWIDT  487 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~-~~~~~  487 (642)
                      .  +     ++..   ....+.. . .....+++.|++..|+++...  ...|++++.++|+.   ...+.. . .....
T Consensus       214 ~--~-----~~~~---~~~~~~~-~-~~P~giavd~~~G~lyv~d~~--~~~V~~~d~~~g~~---~~~~~~~~~~~~~~  276 (433)
T 4hw6_A          214 R--A-----SGFT---ERLSLCN-A-RGAKTCAVHPQNGKIYYTRYH--HAMISSYDPATGTL---TEEEVMMDTKGSNF  276 (433)
T ss_dssp             G--G-----GTTC---CEEEEEE-C-SSBCCCEECTTTCCEEECBTT--CSEEEEECTTTCCE---EEEEEECSCCSSCE
T ss_pred             C--C-----CCee---ccccccc-c-CCCCEEEEeCCCCeEEEEECC--CCEEEEEECCCCeE---EEEEeccCCCCCcc
Confidence            3  1     1110   1122222 1 345678999955567777653  34899999987763   133321 1 11223


Q ss_pred             ceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          488 MPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      .++|+|+|++||++.....       .|++++++.
T Consensus       277 ~ia~dpdG~~LYvad~~~~-------~I~~~~~d~  304 (433)
T 4hw6_A          277 HIVWHPTGDWAYIIYNGKH-------CIYRVDYNR  304 (433)
T ss_dssp             EEEECTTSSEEEEEETTTT-------EEEEEEBCT
T ss_pred             cEEEeCCCCEEEEEeCCCC-------EEEEEeCCC
Confidence            5899999998988876543       489988763

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.17  E-value=0.00072  Score=63.71  Aligned_cols=196  Identities=10%  Similarity=0.098  Sum_probs=116.1

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .++|.|++++|+.+.+.  ...|+.+|+++...+.+..  ......+++.+++. ++++..      ....+.++.+.. 
T Consensus        31 Gla~~~~~~~L~aV~d~--~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E------~~~~l~~~~v~~-  100 (255)
T 3qqz_A           31 SLTWSAQSNTLFSTINK--PAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQ-FVISDE------RDYAIYVISLTP-  100 (255)
T ss_dssp             EEEEETTTTEEEEEEET--TEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTE-EEEEET------TTTEEEEEEECT-
T ss_pred             eeEEeCCCCEEEEEECC--CCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCE-EEEEEC------CCCcEEEEEcCC-
Confidence            55889998888877753  6889999999554444433  34677888888875 555553      245666666644 


Q ss_pred             cCCCCCCCCC-ccccceE-Ec-cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEEC--CCCccccceeeCC------
Q 039497          412 LDPSDDNNRE-EIPCDVK-IL-TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDA--VNGEFNGDIRQLT------  480 (642)
Q Consensus       412 ~~~~~~~~~~-~~~~~~~-~l-~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~~~~~~~l~------  480 (642)
                       +      +. ....... .+ ..........++|+|+++.|+.+..+. ...||.++-  .+..    +..+.      
T Consensus       101 -~------~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~----l~i~~~~~~~~  168 (255)
T 3qqz_A          101 -N------SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNE----LHISKDKALQR  168 (255)
T ss_dssp             -T------CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSC----CEEEECHHHHH
T ss_pred             -C------CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCc----eeeecchhhcc
Confidence             2      21 0000111 11 111113456789999999988877653 458898882  1111    12211      


Q ss_pred             -CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEE
Q 039497          481 -DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLF  558 (642)
Q Consensus       481 -~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~  558 (642)
                       ........+++.|.-..|++.+....       .|..+|.++.-...+... +..+. ......+..++|.++|+ ||+
T Consensus       169 ~~~~~d~S~l~~dp~tg~lliLS~~s~-------~L~~~d~~g~~~~~~~L~~g~~~l-~~~~~qpEGia~d~~G~-lyI  239 (255)
T 3qqz_A          169 QFTLDDVSGAEFNQQKNTLLVLSHESR-------ALQEVTLVGEVIGEMSLTKGSRGL-SHNIKQAEGVAMDASGN-IYI  239 (255)
T ss_dssp             TCCSSCCCEEEEETTTTEEEEEETTTT-------EEEEECTTCCEEEEEECSTTGGGC-SSCCCSEEEEEECTTCC-EEE
T ss_pred             ccccCCceeEEEcCCCCeEEEEECCCC-------eEEEEcCCCCEEEEEEcCCccCCc-ccccCCCCeeEECCCCC-EEE
Confidence             11224567899998888888887654       499999987633333322 11000 00012456789999997 666


Q ss_pred             EE
Q 039497          559 TA  560 (642)
Q Consensus       559 ~~  560 (642)
                      ++
T Consensus       240 vs  241 (255)
T 3qqz_A          240 VS  241 (255)
T ss_dssp             EE
T ss_pred             Ec
Confidence            64

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.15  E-value=0.0037  Score=68.57  Aligned_cols=82  Identities=11%  Similarity=0.018  Sum_probs=51.6

Q ss_pred             eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV  539 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  539 (642)
                      ..|+.+|+.+|+.   +-.+... .......++.+|..+++...++        .|+.+|+.+++...-.......    
T Consensus       457 g~l~A~D~~tG~~---~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg--------~l~a~D~~tG~~lw~~~~~~~~----  520 (677)
T 1kb0_A          457 GRLLAWDPVAQKA---AWSVEHV-SPWNGGTLTTAGNVVFQGTADG--------RLVAYHAATGEKLWEAPTGTGV----  520 (677)
T ss_dssp             EEEEEEETTTTEE---EEEEEES-SSCCCCEEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC----
T ss_pred             cEEEEEeCCCCcE---EeecCCC-CCCcCcceEeCCCEEEEECCCC--------cEEEEECCCCceeeeeeCCCCc----
Confidence            5899999999985   3333322 2233456777888777764443        4999999988765433322222    


Q ss_pred             ccccccceEEcCCCCEEEEEE
Q 039497          540 DRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       540 ~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                         ....+.|+.||+.++...
T Consensus       521 ---~~~p~~y~~~G~~~v~~~  538 (677)
T 1kb0_A          521 ---VAAPSTYMVDGRQYVSVA  538 (677)
T ss_dssp             ---CSCCEEEEETTEEEEEEE
T ss_pred             ---ccCCEEEEeCCEEEEEEe
Confidence               235677889998665543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.13  E-value=0.00012  Score=71.94  Aligned_cols=187  Identities=13%  Similarity=0.021  Sum_probs=102.8

Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      .....++|+|+|+ |+++..      ...  .|+.++.  +      +     ....+.... .....+++++||+ |++
T Consensus        32 ~~pegia~~~~g~-lyv~d~------~~~--~I~~~d~--~------g-----~~~~~~~~~-~~p~gia~~~dG~-l~v   87 (306)
T 2p4o_A           32 TFLENLASAPDGT-IFVTNH------EVG--EIVSITP--D------G-----NQQIHATVE-GKVSGLAFTSNGD-LVA   87 (306)
T ss_dssp             CCEEEEEECTTSC-EEEEET------TTT--EEEEECT--T------C-----CEEEEEECS-SEEEEEEECTTSC-EEE
T ss_pred             CCcceEEECCCCC-EEEEeC------CCC--eEEEECC--C------C-----ceEEEEeCC-CCceeEEEcCCCc-EEE
Confidence            3456789999887 666652      123  4566655  2      2     222222222 3566789999998 555


Q ss_pred             EeCCCCceeEEEEECCCCccccceeeCCCCC--CcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP--WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~--~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      +........|+.++..+|+.    +.+....  .....+...+++ .+++.....       ..||++|..+++.+....
T Consensus        88 ad~~~~~~~v~~~d~~~g~~----~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~-------g~i~~~d~~~~~~~v~~~  155 (306)
T 2p4o_A           88 TGWNADSIPVVSLVKSDGTV----ETLLTLPDAIFLNGITPLSDT-QYLTADSYR-------GAIWLIDVVQPSGSIWLE  155 (306)
T ss_dssp             EEECTTSCEEEEEECTTSCE----EEEEECTTCSCEEEEEESSSS-EEEEEETTT-------TEEEEEETTTTEEEEEEE
T ss_pred             EeccCCcceEEEEcCCCCeE----EEEEeCCCccccCcccccCCC-cEEEEECCC-------CeEEEEeCCCCcEeEEEE
Confidence            54322234689999888874    4432211  122334444444 455554322       259999987653332211


Q ss_pred             cC------CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC-Cce---eeccCCCC
Q 039497          531 AG------PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG-SGL---RRLTWNGY  600 (642)
Q Consensus       531 ~~------~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---~~lt~~~~  600 (642)
                      ..      ...    .......  +++||++||++....                ..|+++++++ +.+   ..+.. ..
T Consensus       156 ~~~~~~~~~~~----~~~~png--is~dg~~lyv~d~~~----------------~~I~~~~~~~~g~~~~~~~~~~-~~  212 (306)
T 2p4o_A          156 HPMLARSNSES----VFPAANG--LKRFGNFLYVSNTEK----------------MLLLRIPVDSTDKPGEPEIFVE-QT  212 (306)
T ss_dssp             CGGGSCSSTTC----CSCSEEE--EEEETTEEEEEETTT----------------TEEEEEEBCTTSCBCCCEEEEE-SC
T ss_pred             CCccccccccC----CCCcCCC--cCcCCCEEEEEeCCC----------------CEEEEEEeCCCCCCCccEEEec-cC
Confidence            00      000    0001222  389999998877543                2899999875 322   11211 13


Q ss_pred             CCCCcEEecCCceEEeec
Q 039497          601 ENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       601 ~~~~~~~s~dg~~~~~~~  618 (642)
                      ....++++++|++|++..
T Consensus       213 ~P~gi~vd~dG~l~va~~  230 (306)
T 2p4o_A          213 NIDDFAFDVEGNLYGATH  230 (306)
T ss_dssp             CCSSEEEBTTCCEEEECB
T ss_pred             CCCCeEECCCCCEEEEeC
Confidence            456789999998887764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.13  E-value=0.00014  Score=68.22  Aligned_cols=182  Identities=8%  Similarity=-0.019  Sum_probs=106.4

Q ss_pred             CCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                      +++|+.....  ...|.++|+++++.............-..+++++|+.+..      ..+.+.+++...         .
T Consensus        64 ~~~Ly~stG~--~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw------~~~~v~V~D~~T---------l  126 (268)
T 3nok_A           64 QGHFFESTGH--QGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTW------TEGLLFTWSGMP---------P  126 (268)
T ss_dssp             TTEEEEEETT--TTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEES------SSCEEEEEETTT---------T
T ss_pred             CCEEEEEcCC--CCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEc------cCCEEEEEECCc---------C
Confidence            5666555432  2349999999887644334334444445678888988773      245555555432         2


Q ss_pred             CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCC---cccceeEecCC
Q 039497          421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPW---IDTMPSWSPKG  495 (642)
Q Consensus       421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~---~~~~~~~spdG  495 (642)
                      +    ....+....    ....+++||+.|+.+.   +...|+.+|.++.+.   ...+.-  ...   ..+.+.|. ||
T Consensus       127 ~----~~~ti~~~~----eGwGLt~Dg~~L~vSd---Gs~~l~~iDp~T~~v---~~~I~V~~~g~~v~~lNeLe~~-dG  191 (268)
T 3nok_A          127 Q----RERTTRYSG----EGWGLCYWNGKLVRSD---GGTMLTFHEPDGFAL---VGAVQVKLRGQPVELINELECA-NG  191 (268)
T ss_dssp             E----EEEEEECSS----CCCCEEEETTEEEEEC---SSSEEEEECTTTCCE---EEEEECEETTEECCCEEEEEEE-TT
T ss_pred             c----EEEEEeCCC----ceeEEecCCCEEEEEC---CCCEEEEEcCCCCeE---EEEEEeCCCCcccccccccEEe-CC
Confidence            1    334444322    1245567998876654   456999999998876   444432  211   22345666 77


Q ss_pred             CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-C----CCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-P----EGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~----~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                       .|+...-.       ...|.++|.++++........ .    ...........+.++|+|++++|+++...
T Consensus       192 -~lyanvw~-------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          192 -VIYANIWH-------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             -EEEEEETT-------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             -EEEEEECC-------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence             46654432       236999999999876544321 0    00000000134679999999998887653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.10  E-value=0.00074  Score=63.63  Aligned_cols=198  Identities=10%  Similarity=0.113  Sum_probs=118.2

Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      ..+..++|.|+++.|+.+..        ..-.|+.++.  .      +.    ..+.+..........+++.++|+ ++.
T Consensus        27 ~~lSGla~~~~~~~L~aV~d--------~~~~I~~ld~--~------g~----v~~~i~l~g~~D~EGIa~~~~g~-~~v   85 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTIN--------KPAAIVEMTT--N------GD----LIRTIPLDFVKDLETIEYIGDNQ-FVI   85 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEE--------TTEEEEEEET--T------CC----EEEEEECSSCSSEEEEEECSTTE-EEE
T ss_pred             cCcceeEEeCCCCEEEEEEC--------CCCeEEEEeC--C------CC----EEEEEecCCCCChHHeEEeCCCE-EEE
Confidence            45788999999999988874        3566888887  3      21    44444332224566788888886 444


Q ss_pred             EeCCCCceeEEEEECCCCccccceeeCC------CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEe--CCCCc
Q 039497          453 RSGRSGHKNLFVLDAVNGEFNGDIRQLT------DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK--PDGSG  524 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~------~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~  524 (642)
                      +..+.  ..|+++++........+..+.      ........++|+|+++.|+....+.      ...||.++  +.+..
T Consensus        86 s~E~~--~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~------p~~i~~~~g~~~~~~  157 (255)
T 3qqz_A           86 SDERD--YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN------PIEVYKVNGLLSSNE  157 (255)
T ss_dssp             EETTT--TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS------SEEEEEEESTTCSSC
T ss_pred             EECCC--CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC------CceEEEEcccccCCc
Confidence            55443  467777765332100011111      1223346789999999998877653      34688887  22222


Q ss_pred             eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCC----
Q 039497          525 LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGY----  600 (642)
Q Consensus       525 ~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~----  600 (642)
                      .+.+.......  ......+..+++.|....|++.+....                .|..+|.++..+..+.=..+    
T Consensus       158 l~i~~~~~~~~--~~~~~d~S~l~~dp~tg~lliLS~~s~----------------~L~~~d~~g~~~~~~~L~~g~~~l  219 (255)
T 3qqz_A          158 LHISKDKALQR--QFTLDDVSGAEFNQQKNTLLVLSHESR----------------ALQEVTLVGEVIGEMSLTKGSRGL  219 (255)
T ss_dssp             CEEEECHHHHH--TCCSSCCCEEEEETTTTEEEEEETTTT----------------EEEEECTTCCEEEEEECSTTGGGC
T ss_pred             eeeecchhhcc--ccccCCceeEEEcCCCCeEEEEECCCC----------------eEEEEcCCCCEEEEEEcCCccCCc
Confidence            33221100000  000013567899999999999987643                78899988864333322211    


Q ss_pred             -----CCCCcEEecCCceEEee
Q 039497          601 -----ENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       601 -----~~~~~~~s~dg~~~~~~  617 (642)
                           ..-.++|.++|.+|+++
T Consensus       220 ~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          220 SHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             SSCCCSEEEEEECTTCCEEEEE
T ss_pred             ccccCCCCeeEECCCCCEEEEc
Confidence                 22468999999888775

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.06  E-value=6.5e-05  Score=72.66  Aligned_cols=145  Identities=9%  Similarity=0.081  Sum_probs=89.7

Q ss_pred             CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC-CcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP-WIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL  515 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~-~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l  515 (642)
                      ....+.++|||+.|+ ..    ...|+.+|. +|+.   +..+.... .....+.+.|||+.|+......       ..|
T Consensus        38 ~~~~~~~~pdG~ilv-s~----~~~V~~~d~-~G~~---~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~-------~~v  101 (276)
T 3no2_A           38 ECNSVAATKAGEILF-SY----SKGAKMITR-DGRE---LWNIAAPAGCEMQTARILPDGNALVAWCGHP-------STI  101 (276)
T ss_dssp             CCCEEEECTTSCEEE-EC----BSEEEEECT-TSCE---EEEEECCTTCEEEEEEECTTSCEEEEEESTT-------EEE
T ss_pred             CCcCeEECCCCCEEE-eC----CCCEEEECC-CCCE---EEEEcCCCCccccccEECCCCCEEEEecCCC-------CEE
Confidence            355678999998766 32    347999999 6775   55555432 3455678999999877766422       348


Q ss_pred             EEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497          516 YVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL  595 (642)
Q Consensus       516 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  595 (642)
                      +.+|.+++....+.......   .+......+.+++||+.|+.....                 ..|+.+|.+|+.+.++
T Consensus       102 ~~vd~~Gk~l~~~~~~~~~~---~~~~~~~~v~~~~~G~~lv~~~~~-----------------~~v~~~d~~G~~~w~~  161 (276)
T 3no2_A          102 LEVNMKGEVLSKTEFETGIE---RPHAQFRQINKNKKGNYLVPLFAT-----------------SEVREIAPNGQLLNSV  161 (276)
T ss_dssp             EEECTTSCEEEEEEECCSCS---SGGGSCSCCEECTTSCEEEEETTT-----------------TEEEEECTTSCEEEEE
T ss_pred             EEEeCCCCEEEEEeccCCCC---cccccccCceECCCCCEEEEecCC-----------------CEEEEECCCCCEEEEE
Confidence            88898776555544321100   000123456789999977654432                 2788898885555444


Q ss_pred             cCCCCCCCCcEEecCCceEEeec
Q 039497          596 TWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       596 t~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                      ... ....+....++|+.+++..
T Consensus       162 ~~~-~~~~~~~~~~~g~~~v~~~  183 (276)
T 3no2_A          162 KLS-GTPFSSAFLDNGDCLVACG  183 (276)
T ss_dssp             ECS-SCCCEEEECTTSCEEEECB
T ss_pred             ECC-CCccceeEcCCCCEEEEeC
Confidence            432 3345566777887776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.0012  Score=68.30  Aligned_cols=169  Identities=15%  Similarity=0.118  Sum_probs=101.3

Q ss_pred             ccEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEEeecC-----Cceeeee-------ecCCCEEEEEEcCCCcccCC
Q 039497          334 FPSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDR-----TAFYNSW-------SPTEKHVIYTSTGPIFQSER  400 (642)
Q Consensus       334 ~~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-----~~~~~~~-------spdg~~l~~~~~~~~~~~~~  400 (642)
                      .++++| +...|+++..  ....|+++|++++....+....     ....++|       +++|++|++......-  ..
T Consensus       143 ~la~dp~~~~~Lyv~~~--~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~--~~  218 (496)
T 3kya_A          143 RLAFDPLNKDHLYICYD--GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK--GD  218 (496)
T ss_dssp             EEEEETTEEEEEEEEEE--TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT--GG
T ss_pred             EEEEccCCCCEEEEEEC--CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC--cc
Confidence            457888 4555555543  2467999999998887776522     3677889       9999988888753100  01


Q ss_pred             CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECC-------CCcc-
Q 039497          401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAV-------NGEF-  472 (642)
Q Consensus       401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~-------~g~~-  472 (642)
                      ....++.+....++.+....     ....+...  .....++++|++++|+++....+  +|+++|++       ++.. 
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~-----~~~~v~~~--~~p~giavdp~~g~LYvtd~~~g--~V~r~d~~~~~~~~~tg~~~  289 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRS-----DIQLIAAY--KQCNGATIHPINGELYFNSYEKG--QVFRLDLVDYFKTIKNGGSW  289 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTS-----CEEEEEEE--SCCCCEEECTTTCCEEEEETTTT--EEEEECHHHHHHHHHTTCCC
T ss_pred             cCceEEEEecCCCCceeecc-----cceeeccC--CCceEEEEcCCCCeEEEEECCCC--EEEEEecccccccccCceee
Confidence            24456666441111110000     11233322  24456889998889998887544  79999997       5652 


Q ss_pred             ----cc---ceeeCC-C-CCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          473 ----NG---DIRQLT-D-GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       473 ----~~---~~~~l~-~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                          +.   ....+. . .......++|+|+|+.||++....       ..|++++.++
T Consensus       290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~-------h~I~kid~dg  341 (496)
T 3kya_A          290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINN-------HYFMRSDYDE  341 (496)
T ss_dssp             CCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTT-------TEEEEEEEET
T ss_pred             cccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCC-------CEEEEEecCC
Confidence                00   001221 1 112345789999999888887654       3488877655

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.95  E-value=0.00048  Score=64.54  Aligned_cols=189  Identities=12%  Similarity=0.075  Sum_probs=108.8

Q ss_pred             ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497          375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS  454 (642)
Q Consensus       375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~  454 (642)
                      ...+.|+ |+ .|+.+..      ..+...|..++.  +     +++    ....+....  ......+.++|+.|+...
T Consensus        45 tqGL~~~-~~-~LyestG------~~g~S~v~~vD~--~-----Tgk----v~~~~~l~~--~~FgeGit~~g~~ly~lt  103 (262)
T 3nol_A           45 TEGFFYR-NG-YFYESTG------LNGRSSIRKVDI--E-----SGK----TLQQIELGK--RYFGEGISDWKDKIVGLT  103 (262)
T ss_dssp             EEEEEEE-TT-EEEEEEE------ETTEEEEEEECT--T-----TCC----EEEEEECCT--TCCEEEEEEETTEEEEEE
T ss_pred             cceEEEE-CC-EEEEECC------CCCCceEEEEEC--C-----CCc----EEEEEecCC--ccceeEEEEeCCEEEEEE
Confidence            4567787 54 6666552      234445555555  2     232    233333222  222334566788998887


Q ss_pred             CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497          455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE  534 (642)
Q Consensus       455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~  534 (642)
                      .+++  .++++|.++.+.   +..+....   ....+++||+.|+.+...        ..|+.+|..+.+...-..-...
T Consensus       104 w~~~--~v~v~D~~t~~~---~~ti~~~~---eG~glt~dg~~L~~SdGs--------~~i~~iDp~T~~v~~~I~V~~~  167 (262)
T 3nol_A          104 WKNG--LGFVWNIRNLRQ---VRSFNYDG---EGWGLTHNDQYLIMSDGT--------PVLRFLDPESLTPVRTITVTAH  167 (262)
T ss_dssp             SSSS--EEEEEETTTCCE---EEEEECSS---CCCCEEECSSCEEECCSS--------SEEEEECTTTCSEEEEEECEET
T ss_pred             eeCC--EEEEEECccCcE---EEEEECCC---CceEEecCCCEEEEECCC--------CeEEEEcCCCCeEEEEEEeccC
Confidence            6544  899999999886   56665432   334667889887776532        2499999988665433221111


Q ss_pred             CCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-eccCCC------------CC
Q 039497          535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-RLTWNG------------YE  601 (642)
Q Consensus       535 ~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~------------~~  601 (642)
                      +   .+......+.|. ||+ |+...-..                ..|.++|..++++. .+...+            ..
T Consensus       168 g---~~~~~lNELe~~-~G~-lyan~w~~----------------~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v  226 (262)
T 3nol_A          168 G---EELPELNELEWV-DGE-IFANVWQT----------------NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV  226 (262)
T ss_dssp             T---EECCCEEEEEEE-TTE-EEEEETTS----------------SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC
T ss_pred             C---ccccccceeEEE-CCE-EEEEEccC----------------CeEEEEECCCCcEEEEEECCcCccccccccCcCCc
Confidence            1   000012345675 774 65444222                28999999988754 332211            12


Q ss_pred             CCCcEEecCC-ceEEeecCCC
Q 039497          602 NGTPAWHPGN-QLDLGKLRLE  621 (642)
Q Consensus       602 ~~~~~~s~dg-~~~~~~~~~~  621 (642)
                      ...++|+|++ ++|++...-.
T Consensus       227 lNGIA~dp~~~~lfVTGK~Wp  247 (262)
T 3nol_A          227 LNGIAWDKEHHRLFVTGKLWP  247 (262)
T ss_dssp             EEEEEEETTTTEEEEEETTCS
T ss_pred             eEEEEEcCCCCEEEEECCCCC
Confidence            2568999986 6678876654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.95  E-value=0.00025  Score=73.31  Aligned_cols=161  Identities=13%  Similarity=0.163  Sum_probs=100.6

Q ss_pred             Cceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497          374 TAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       374 ~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      ....++++| ++..|+++..       .  -.|..++.  +     ++     ....+.... .....++|+++|++|++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~-------~--~~I~~id~--~-----~~-----~v~~~~~~~-~~P~~ia~d~~G~~lyv  195 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGE-------Q--HPTRLIDF--E-----KE-----YVSTVYSGL-SKVRTICWTHEADSMII  195 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEB-------T--EEEEEEET--T-----TT-----EEEEEECCC-SCEEEEEECTTSSEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeC-------C--CcEEEEEC--C-----CC-----EEEEEecCC-CCcceEEEeCCCCEEEE
Confidence            456788998 5677777763       1  45666666  3     22     444444333 45678999999998888


Q ss_pred             EeCCCC--ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          453 RSGRSG--HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       453 ~~~~~g--~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      +....+  ...++.++.+ |.. .....+... .....++++|++..|++......       +|++++++++....+..
T Consensus       196 ad~~~~~~~~~v~~~~~~-g~~-~~~~~l~~~-~~p~giavdp~~g~lyv~d~~~~-------~V~~~~~~~~~~~~~~~  265 (430)
T 3tc9_A          196 TNDQNNNDRPNNYILTRE-SGF-KVITELTKG-QNCNGAETHPINGELYFNSWNAG-------QVFRYDFTTQETTPLFT  265 (430)
T ss_dssp             EECCSCTTSEEEEEEEGG-GTS-CSEEEEEEC-SSCCCEEECTTTCCEEEEETTTT-------EEEEEETTTTEEEEEEE
T ss_pred             EeCCCCcccceEEEEeCC-Cce-eeeeeeccC-CCceEEEEeCCCCEEEEEECCCC-------EEEEEECCCCcEEEEEE
Confidence            775433  2356667655 432 001222221 23456789995555777765432       49999998877644443


Q ss_pred             cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          531 AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                      .....       ....++|+|||++||++.....                .|++++.++
T Consensus       266 ~~~~~-------~P~gia~~pdG~~lyv~d~~~~----------------~I~~~~~d~  301 (430)
T 3tc9_A          266 IQDSG-------WEFHIQFHPSGNYAYIVVVNQH----------------YILRSDYDW  301 (430)
T ss_dssp             CSSSS-------CCEEEEECTTSSEEEEEETTTT----------------EEEEEEEET
T ss_pred             cCCCC-------cceeEEEcCCCCEEEEEECCCC----------------EEEEEeCCc
Confidence            22212       3567999999998888865432                788887765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.88  E-value=0.0003  Score=70.37  Aligned_cols=193  Identities=11%  Similarity=0.052  Sum_probs=105.1

Q ss_pred             ccEEcCCCCEEEEEecCC---CceeEEEEECCCCCeeE-Eeec-------CCceeeeeecCCCEEEEEEcCCCcccCCCe
Q 039497          334 FPSFSPDGGLIVFNHDFE---LNAGIKIAKSDGSKRWT-LIKD-------RTAFYNSWSPTEKHVIYTSTGPIFQSERAT  402 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~---~~~~l~~~d~~~~~~~~-l~~~-------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  402 (642)
                      .+.++++|+ |+++....   ....|+++|+++++... +...       .....++++|++..++++....   .....
T Consensus        71 gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~---~~~~~  146 (343)
T 2qe8_A           71 GIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP---DDKAA  146 (343)
T ss_dssp             EEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS---GGGCE
T ss_pred             EEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc---CCCCe
Confidence            457889886 44443210   13689999998877433 3221       2346789998877777765310   02334


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEccc----------------------c------CCCCccCcEECCCCCeEEEEe
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKILTK----------------------E------ETGNNAFPSCSPDGKFLVFRS  454 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------~------~~~~~~~~~~SpDg~~l~~~~  454 (642)
                      +.++++..         +.    ..+.+..                      .      .......++|||||+.|++..
T Consensus       147 i~v~d~~~---------g~----~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~  213 (343)
T 2qe8_A          147 LIRVDLQT---------GL----AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP  213 (343)
T ss_dssp             EEEEETTT---------CC----EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred             EEEEECCC---------CC----EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence            44444321         10    1111100                      0      001234589999999999887


Q ss_pred             CCCCceeEEEEECC---CCccc-----cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497          455 GRSGHKNLFVLDAV---NGEFN-----GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       455 ~~~g~~~l~~~d~~---~g~~~-----~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                      ...  ..||.++..   .+...     ..+..+ ........++++++|+ |+++....       ..|++||.++++..
T Consensus       214 ~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~~-------~~V~~~d~~~G~~~  282 (343)
T 2qe8_A          214 MHS--TSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLAH-------SAIGVITSADRAYK  282 (343)
T ss_dssp             SSC--SEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGGG-------TEEEEEETTTTEEE
T ss_pred             CCC--CeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccCC-------CeEEEEECCCCCEE
Confidence            533  389998853   11100     000111 1112345679999996 55555432       34999999455555


Q ss_pred             EeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          527 RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       527 ~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      .+.......       .+..++|++||+ |++++..
T Consensus       283 ~~~~~~~~~-------~p~~va~~~~g~-l~v~~~~  310 (343)
T 2qe8_A          283 LLVTDEKLS-------WTDSFNFGSDGY-LYFDCNQ  310 (343)
T ss_dssp             EEEECGGGS-------CEEEEEECTTSC-EEEEECC
T ss_pred             EEEECCcee-------cCCeeEECCCCc-EEEEeCc
Confidence            554321111       467899999987 5555543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.87  E-value=0.0022  Score=63.37  Aligned_cols=210  Identities=14%  Similarity=0.123  Sum_probs=110.7

Q ss_pred             cEEcC-CCCEEEEEecCCCceeEEEEECCCCCeeEEee--c----CCceeeeeec-CCCEEEEEEcCCCcc---------
Q 039497          335 PSFSP-DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--D----RTAFYNSWSP-TEKHVIYTSTGPIFQ---------  397 (642)
Q Consensus       335 ~~~sp-dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~----~~~~~~~~sp-dg~~l~~~~~~~~~~---------  397 (642)
                      +.+.+ +| .|++....   ..|++++.+++..+.+..  .    .....+++.| +|+ |+++.....+.         
T Consensus        85 i~~~~~~g-~l~v~d~~---~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           85 ISYNLQNN-QLYIVDCY---YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             EEEETTTT-EEEEEETT---TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHH
T ss_pred             EEEcCCCC-cEEEEECC---CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehc
Confidence            46776 55 45554332   348888888766555432  1    2356788999 885 66665321000         


Q ss_pred             cCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcccccee
Q 039497          398 SERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIR  477 (642)
Q Consensus       398 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~  477 (642)
                      .....-.++.++.  +     ++     ....+.... .....++|+|||+.|+++..  +...|++++++++.. ...+
T Consensus       160 ~~~~~g~v~~~d~--~-----~~-----~~~~~~~~~-~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~-~~~~  223 (322)
T 2fp8_A          160 TSDKTGRLIKYDP--S-----TK-----ETTLLLKEL-HVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKK-GTAE  223 (322)
T ss_dssp             HTCCCEEEEEEET--T-----TT-----EEEEEEEEE-SCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTT-TCEE
T ss_pred             ccCCCceEEEEeC--C-----CC-----EEEEeccCC-ccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcC-Cccc
Confidence            0112345677765  2     22     333332222 34456899999998888764  334899999875321 0012


Q ss_pred             eCCCCCCcccceeEecCCCEEEEEecCC-CC--CCCCceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCC
Q 039497          478 QLTDGPWIDTMPSWSPKGDLIAFSSNRH-NP--DNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADG  553 (642)
Q Consensus       478 ~l~~~~~~~~~~~~spdG~~l~~~~~~~-~~--~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg  553 (642)
                      .+....+ ...++++++|+ |+++.... ..  .......|+++|.++.....+.... ...      ..+..+.+  ++
T Consensus       224 ~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~------~~~~~~~~--~~  293 (322)
T 2fp8_A          224 VLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAG------EHFEQIQE--HD  293 (322)
T ss_dssp             EEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTT------SCCCEEEE--ET
T ss_pred             eEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCcc------ccceEEEE--eC
Confidence            2222223 45678999998 55554320 00  0001346999998765555554321 100      02344445  34


Q ss_pred             CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497          554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG  591 (642)
Q Consensus       554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  591 (642)
                      ..|++++....                .|.+++++.+.
T Consensus       294 g~L~v~~~~~~----------------~i~~~~~~~~~  315 (322)
T 2fp8_A          294 GLLYIGTLFHG----------------SVGILVYDKKG  315 (322)
T ss_dssp             TEEEEECSSCS----------------EEEEEEC----
T ss_pred             CEEEEeecCCC----------------ceEEEeccccc
Confidence            56777764332                78888876544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.83  E-value=0.031  Score=61.25  Aligned_cols=79  Identities=9%  Similarity=-0.030  Sum_probs=49.0

Q ss_pred             eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497          513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL  592 (642)
Q Consensus       513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  592 (642)
                      ..|+.+|+.+++..--...+.         ......++.+|..+++.+.+                 +.|+.+|..++++
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~~~g~~v~~g~~d-----------------g~l~a~D~~tG~~  510 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVS---------PWNGGTLTTAGNVVFQGTAD-----------------GRLVAYHAATGEK  510 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESS---------SCCCCEEEETTTEEEEECTT-----------------SEEEEEETTTCCE
T ss_pred             cEEEEEeCCCCcEEeecCCCC---------CCcCcceEeCCCEEEEECCC-----------------CcEEEEECCCCce
Confidence            679999999887643222221         12345677888877765433                 2899999987764


Q ss_pred             -eeccCC-CCCCCCcEEecCCceEEee
Q 039497          593 -RRLTWN-GYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       593 -~~lt~~-~~~~~~~~~s~dg~~~~~~  617 (642)
                       ..+... +....-..|+.||+.++..
T Consensus       511 lw~~~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          511 LWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             eeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence             334332 2333455778999766554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.82  E-value=0.00027  Score=71.16  Aligned_cols=183  Identities=8%  Similarity=-0.010  Sum_probs=109.8

Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR  453 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~  453 (642)
                      .+..+++++....++...        ...+.+|.++...+......+.   .........+ . +.+++|  ||++|+..
T Consensus        39 ~~nlLais~~~gll~a~~--------~~~l~v~~~~~l~~~~~~~~~~---~~~~~~~~lp-~-V~~l~f--d~~~L~v~  103 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAAS--------GSKAVVGELQLLRDHITSDSTP---LTFKWEKEIP-D-VIFVCF--HGDQVLVS  103 (388)
T ss_dssp             CCBCEEEETTTTEEEEEE--------TTEEEEEEHHHHHHHHHSSSCC---CCCSEEEECT-T-EEEEEE--ETTEEEEE
T ss_pred             cccEEEEcCCCCEEEEeC--------CCEEEEEEhhHhhhhhcccccc---ccceEEeeCC-C-eeEEEE--CCCEEEEE
Confidence            467789999988777665        3567777654300000000000   0111222233 4 788899  99999887


Q ss_pred             eCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCC
Q 039497          454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGP  533 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  533 (642)
                      .  +  ..|.+||+.+-..   ...+......+..+.+.+.  .++....++.        |++||++.+....+..   
T Consensus       104 ~--~--~~l~v~dv~sl~~---~~~~~~~~~~v~~i~~~~p--~~av~~~dG~--------L~v~dl~~~~~~~~~~---  163 (388)
T 1xip_A          104 T--R--NALYSLDLEELSE---FRTVTSFEKPVFQLKNVNN--TLVILNSVND--------LSALDLRTKSTKQLAQ---  163 (388)
T ss_dssp             E--S--SEEEEEESSSTTC---EEEEEECSSCEEEEEECSS--EEEEEETTSE--------EEEEETTTCCEEEEEE---
T ss_pred             c--C--CcEEEEEchhhhc---cCccceeecceeeEEecCC--CEEEEECCCC--------EEEEEccCCccccccC---
Confidence            2  2  3799999865432   1222222223344455443  2666655553        9999998877665432   


Q ss_pred             CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc---eeecc---------CCCCC
Q 039497          534 EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG---LRRLT---------WNGYE  601 (642)
Q Consensus       534 ~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~lt---------~~~~~  601 (642)
                               .+..++|||+|  +++...++                 .|..|+.++++   ...|.         .+...
T Consensus       164 ---------~Vs~v~WSpkG--~~vg~~dg-----------------~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~  215 (388)
T 1xip_A          164 ---------NVTSFDVTNSQ--LAVLLKDR-----------------SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS  215 (388)
T ss_dssp             ---------SEEEEEECSSE--EEEEETTS-----------------CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE
T ss_pred             ---------CceEEEEcCCc--eEEEEcCC-----------------cEEEEcCCCccccccceecCCcccccccCCCee
Confidence                     46789999999  45555543                 67777777776   33452         13456


Q ss_pred             CCCcEEecCCceEEeecC
Q 039497          602 NGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       602 ~~~~~~s~dg~~~~~~~~  619 (642)
                      +.++.|.++++++++-..
T Consensus       216 V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          216 PLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             EEEEEESSSSEEEEEEEC
T ss_pred             EEEEEEecCCeEEEEEcC
Confidence            788999999999876433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.79  E-value=0.00078  Score=63.12  Aligned_cols=186  Identities=14%  Similarity=0.037  Sum_probs=107.0

Q ss_pred             ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497          375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS  454 (642)
Q Consensus       375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~  454 (642)
                      ...+.|+  ++.|+.+..      ..+.++.+++..         ++    ....+ ...  ........++|+.|+...
T Consensus        57 tqGL~~~--~~~Ly~stG------~~g~v~~iD~~T---------gk----v~~~~-l~~--~~FgeGit~~g~~Ly~lt  112 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTG------HQGTLRQLSLES---------AQ----PVWME-RLG--NIFAEGLASDGERLYQLT  112 (268)
T ss_dssp             EEEEEEE--TTEEEEEET------TTTEEEECCSSC---------SS----CSEEE-ECT--TCCEEEEEECSSCEEEEE
T ss_pred             cceEEEE--CCEEEEEcC------CCCEEEEEECCC---------Cc----EEeEE-CCC--CcceeEEEEeCCEEEEEE
Confidence            4566675  567777663      344554444433         32    33333 222  222233566788888887


Q ss_pred             CCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCC
Q 039497          455 GRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPE  534 (642)
Q Consensus       455 ~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~  534 (642)
                      .+++  .++++|.++.+.   +..+....   .....++||+.|+.+...        ..|+.+|.++.+...-..-...
T Consensus       113 w~~~--~v~V~D~~Tl~~---~~ti~~~~---eGwGLt~Dg~~L~vSdGs--------~~l~~iDp~T~~v~~~I~V~~~  176 (268)
T 3nok_A          113 WTEG--LLFTWSGMPPQR---ERTTRYSG---EGWGLCYWNGKLVRSDGG--------TMLTFHEPDGFALVGAVQVKLR  176 (268)
T ss_dssp             SSSC--EEEEEETTTTEE---EEEEECSS---CCCCEEEETTEEEEECSS--------SEEEEECTTTCCEEEEEECEET
T ss_pred             ccCC--EEEEEECCcCcE---EEEEeCCC---ceeEEecCCCEEEEECCC--------CEEEEEcCCCCeEEEEEEeCCC
Confidence            6543  899999999886   56665432   234566889988877633        2499999988765433221111


Q ss_pred             CCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee-eccCC------------C-C
Q 039497          535 GSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR-RLTWN------------G-Y  600 (642)
Q Consensus       535 ~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~------------~-~  600 (642)
                      +   .+-.....+.|. || .|+......                ..|.++|..++++. .|...            . .
T Consensus       177 g---~~v~~lNeLe~~-dG-~lyanvw~s----------------~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~  235 (268)
T 3nok_A          177 G---QPVELINELECA-NG-VIYANIWHS----------------SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA  235 (268)
T ss_dssp             T---EECCCEEEEEEE-TT-EEEEEETTC----------------SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred             C---cccccccccEEe-CC-EEEEEECCC----------------CeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence            1   000012345665 77 466444222                28999999988753 22211            1 1


Q ss_pred             CCCCcEEecCC-ceEEeecCCC
Q 039497          601 ENGTPAWHPGN-QLDLGKLRLE  621 (642)
Q Consensus       601 ~~~~~~~s~dg-~~~~~~~~~~  621 (642)
                      ....++|+|++ ++|++...-.
T Consensus       236 vlNGIA~dp~~~rlfVTGK~Wp  257 (268)
T 3nok_A          236 VLNGIAVEPGSGRIFMTGKLWP  257 (268)
T ss_dssp             CEEEEEECTTTCCEEEEETTCS
T ss_pred             ceEEEEEcCCCCEEEEeCCCCC
Confidence            22568999976 7778876654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.77  E-value=0.043  Score=55.13  Aligned_cols=105  Identities=14%  Similarity=0.184  Sum_probs=56.6

Q ss_pred             ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceE-ecccCC--------CccCCceeCCCCcEEEEEecCCCCCC
Q 039497           95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFT-RLTPYG--------VVDYSPSVSYSGKFIAVASYESRPWP  165 (642)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~--------~~~~~~~~SPDG~~la~~~~~~~~~~  165 (642)
                      .|.+.++.|++....          +.|+.++.++|+.. +.....        ..........++..|.+...+.    
T Consensus        48 ~p~v~~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g----  113 (376)
T 3q7m_A           48 HPALADNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKA----  113 (376)
T ss_dssp             CCEEETTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTS----
T ss_pred             ccEEECCEEEEEcCC----------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCC----
Confidence            466677777765432          25888888777653 222111        0111111223455666554333    


Q ss_pred             CCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEecCCCceEEEEEecCCCc
Q 039497          166 GEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL  226 (642)
Q Consensus       166 ~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~  226 (642)
                              .|+.++.++|+..--.....   ..|.. .++.+++..  .++  .|+.++..+|+
T Consensus       114 --------~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~--~~g--~l~~~d~~tG~  164 (376)
T 3q7m_A          114 --------QVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHT--SNG--QLQALNEADGA  164 (376)
T ss_dssp             --------EEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEEC--TTS--EEEEEETTTCC
T ss_pred             --------EEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEc--CCC--eEEEEECCCCc
Confidence                    68999999888653333221   23443 355555433  234  78889988773

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.75  E-value=0.0035  Score=62.70  Aligned_cols=151  Identities=18%  Similarity=0.199  Sum_probs=79.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------cCCceeeeeecC---CCEEEEEEcCCCcccCCCeE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------DRTAFYNSWSPT---EKHVIYTSTGPIFQSERATV  403 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~~  403 (642)
                      .++|.|||+ |++... .  ..|++++ ++ +...+..       ......++++||   +..|+++....   ......
T Consensus        35 ~ia~~pdG~-l~V~e~-~--g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~---~~~~~~  105 (352)
T 2ism_A           35 ALAFLPDGG-MLIAER-P--GRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA---EGGLRN  105 (352)
T ss_dssp             EEEECTTSC-EEEEET-T--TEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC---TTSSEE
T ss_pred             EEEEcCCCe-EEEEeC-C--CeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC---CCCCcc
Confidence            568999998 444432 2  6888888 43 3333221       235678899999   77777765310   001124


Q ss_pred             EEEEEEeecCCCCCCCCCccccceEE----cc--ccCCCCccCcEECCCCCeEEEEeCCC-----------CceeEEEEE
Q 039497          404 QIARVSFQLDPSDDNNREEIPCDVKI----LT--KEETGNNAFPSCSPDGKFLVFRSGRS-----------GHKNLFVLD  466 (642)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~~~~~~~~~----l~--~~~~~~~~~~~~SpDg~~l~~~~~~~-----------g~~~l~~~d  466 (642)
                      .|+.++.  +     ++ .+. ..+.    +.  .........++|+||| +|+++....           ....|++++
T Consensus       106 ~v~r~~~--~-----~~-~~~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~  175 (352)
T 2ism_A          106 QVVRLRH--L-----GE-RGV-LDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLT  175 (352)
T ss_dssp             EEEEEEE--C-----SS-CEE-EEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred             EEEEEEe--C-----CC-CcC-ceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEc
Confidence            5666665  2     11 110 1111    22  1111233578999999 576664321           124799999


Q ss_pred             CCCCcccc----------ceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497          467 AVNGEFNG----------DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR  504 (642)
Q Consensus       467 ~~~g~~~~----------~~~~l~~~~~~~~~~~~spdG~~l~~~~~~  504 (642)
                      .+ |+.+.          ..+.+.........++|+|+...|++....
T Consensus       176 ~d-G~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          176 PE-GEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             TT-SSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC
T ss_pred             CC-CCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC
Confidence            87 42100          012222222334567999944446666543

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=97.74  E-value=0.0094  Score=65.23  Aligned_cols=262  Identities=11%  Similarity=0.011  Sum_probs=141.6

Q ss_pred             eecCCcEEEEEEeccCCceeeEEEEEeecCC----CCc--c----------cCCeecCCCCEEEEEEeecCC-C--CCCc
Q 039497          250 AFHDGKRLAVATRRKNRNFRHIEIYDLTLNP----NFH--H----------YNPFVSANSEFIGYHRFRGES-T--EGQS  310 (642)
Q Consensus       250 ~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~----~~~--~----------~~~~~spDg~~l~~~~~~~~~-~--~~~~  310 (642)
                      ++|||+++++...++|+....++++|+.++.    ...  .          ..++|. |...+++.+..+.. .  .+..
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~  215 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYP  215 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSB
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCC
Confidence            7899999999999999999999999994321    111  1          233787 55666664322221 1  1223


Q ss_pred             ccceEeeccCCCceeE-EeeeCCC----ccEEcCCCCE----EEEE-ecCCCceeEEEEECCC--CCeeEEeecCCceee
Q 039497          311 TIPHLEPVASPVKELR-MLRLNGS----FPSFSPDGGL----IVFN-HDFELNAGIKIAKSDG--SKRWTLIKDRTAFYN  378 (642)
Q Consensus       311 ~~~~~~~~~~~~~~~~-~~~~~~~----~~~~spdg~~----l~~~-~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~  378 (642)
                      ..++...+..+..+-. +......    .+..++|++.    ++.. ....-...+|+.+++.  ++..++..... ..+
T Consensus       216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~  294 (711)
T 4hvt_A          216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD-ATL  294 (711)
T ss_dssp             CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT-CEE
T ss_pred             CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc-ceE
Confidence            4456666654432211 2222111    2344677774    3332 2223447889998764  33344433222 233


Q ss_pred             eeecCCCEEEEEEcCCCcc--cCCCeEEEEEEEeecCCCCCCCCCcc---ccceEE-ccccCCCCccCcEECCCCCeEEE
Q 039497          379 SWSPTEKHVIYTSTGPIFQ--SERATVQIARVSFQLDPSDDNNREEI---PCDVKI-LTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       379 ~~spdg~~l~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~-l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      ..+++++ +++......-.  .+-.+..|+.++.  +     +....   ....+. ++......+..+.|+.|  +|++
T Consensus       295 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~  364 (711)
T 4hvt_A          295 QGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHF--T-----DLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFL  364 (711)
T ss_dssp             EEEETTE-EEEECSSCEEETTEEECTTCEEEEEG--G-----GGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEE
T ss_pred             eeeECCE-EEEEECcccccccccCCCCeEEEEEC--C-----cccccccccccceEEECCCCCCeEEEEEEECC--EEEE
Confidence            4566664 44433210000  0012334555554  2     11000   003333 44433245556777765  6777


Q ss_pred             EeCCCCceeEEEEECCCCccccceee-CCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeee
Q 039497          453 RSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                      ...+++..+|+++++.+|+.  ..+. +.-. .+.+.....+++++.+++......    .+..+|++|+. ++.+.+..
T Consensus       365 ~~~~~~~~~l~~~~~~~g~~--~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~----~P~~~~~~d~~-~~~~~l~~  437 (711)
T 4hvt_A          365 ATYDNVVAKVVTFTLENEQW--TKPVVLKLPYQNAIFGMSSYEEEEEALITIENSI----VPPTIYLWVKT-HELKIIRK  437 (711)
T ss_dssp             EEEETTEEEEEEECEETTEE--CCCEEECCCSTTCEEEEECCTTCSCEEEEEECSS----SCCEEEEECTT-SCEEEEEC
T ss_pred             EEEECCEEEEEEEECCCCce--EEEeccCCCCCeEEEEEeecCcCCEEEEEEecCC----CCCEEEEEeCC-CcEEEEec
Confidence            77777888999999877741  0233 3221 233444566788887777766543    56789999998 67766664

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.74  E-value=0.0013  Score=64.96  Aligned_cols=165  Identities=13%  Similarity=0.083  Sum_probs=93.1

Q ss_pred             CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC----CCCCcccceeEecC---CCEEEEEecCCCCC
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT----DGPWIDTMPSWSPK---GDLIAFSSNRHNPD  508 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~----~~~~~~~~~~~spd---G~~l~~~~~~~~~~  508 (642)
                      .....++|.|||+ |+++....  ..|++++.++|+. ..+..+.    ........++++||   +.+||+.....   
T Consensus        32 ~~P~~ia~~pdG~-llVter~~--G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~---  104 (347)
T 3das_A           32 NSPWGLAPLPGGD-LLVSSRDE--ATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA---  104 (347)
T ss_dssp             SSEEEEEECTTSC-EEEEETTT--CEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS---
T ss_pred             CCceEEEEcCCCc-EEEEEecC--CEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecC---
Confidence            4566789999997 44444323  3899998766653 1111121    22334466799996   45666654322   


Q ss_pred             CCCceeEEEEeCCCC--------ceEEeee-cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCC
Q 039497          509 NVEAFSLYVIKPDGS--------GLRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPY  579 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~--------~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~  579 (642)
                        ....|.++.++.+        +.+.|.. .....     ......+.|.|||. ||++..+.+..+..   ...-...
T Consensus       105 --~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~-----~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~---qd~~~~~  173 (347)
T 3das_A          105 --SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGV-----IHNGGRIAFGPDKM-LYAGTGESGDTGLS---QDRKSLG  173 (347)
T ss_dssp             --SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCS-----SCCCCCEEECTTSC-EEEECBCTTCGGGT---TCTTCST
T ss_pred             --CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCC-----CccCccccCCCCCC-EEEEECCCCCCccc---cCCCCCC
Confidence              2346899988662        2233322 11000     01336799999995 77775443221100   0000135


Q ss_pred             CcEEEEEcCCC--------ceeeccCCCCCCCCcEEecCCceEEeec
Q 039497          580 GDLYVVKLDGS--------GLRRLTWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       580 ~~l~~~~~~~~--------~~~~lt~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                      ..|++++.++.        ....+...-.....++|+|+|+++++..
T Consensus       174 G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          174 GKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             TCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred             CEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEec
Confidence            69999999876        2223333334557889999999887763

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.70  E-value=0.0008  Score=69.47  Aligned_cols=160  Identities=17%  Similarity=0.262  Sum_probs=94.8

Q ss_pred             CceeeeeecC--CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          374 TAFYNSWSPT--EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       374 ~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      ....++|+|+  +..|+++..       .  -.|+.++.  .     ++     ....+.... .....+++++||+ |+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~-------~--~~I~~id~--~-----~g-----~v~~~~~~~-~~P~giavd~dG~-ly  196 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQ-------R--DAFRHVDF--V-----NQ-----YVDIKTTNI-GQCADVNFTLNGD-MV  196 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECB-------T--SCEEEEET--T-----TT-----EEEEECCCC-SCEEEEEECTTCC-EE
T ss_pred             CCceEEEccccCCCEEEEEeC-------C--CCEEEEEC--C-----CC-----EEEEeecCC-CCccEEEECCCCC-EE
Confidence            3567889985  566776652       1  34555654  2     23     455554433 4567789999999 76


Q ss_pred             EEeCCC--CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce-EEe
Q 039497          452 FRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL-RRI  528 (642)
Q Consensus       452 ~~~~~~--g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l  528 (642)
                      ++....  ....++.++...+..  ....+.. ......++++|++..||+.....       ..|++++.+++.. +.+
T Consensus       197 Vad~~~~~~~~gv~~~~~~~~~~--~~~~~~~-~~~P~giavd~~~G~lyv~d~~~-------~~V~~~d~~~g~~~~~~  266 (433)
T 4hw6_A          197 VVDDQSSDTNTGIYLFTRASGFT--ERLSLCN-ARGAKTCAVHPQNGKIYYTRYHH-------AMISSYDPATGTLTEEE  266 (433)
T ss_dssp             EEECCSCTTSEEEEEECGGGTTC--CEEEEEE-CSSBCCCEECTTTCCEEECBTTC-------SEEEEECTTTCCEEEEE
T ss_pred             EEcCCCCcccceEEEEECCCCee--ccccccc-cCCCCEEEEeCCCCeEEEEECCC-------CEEEEEECCCCeEEEEE
Confidence            665421  123466666543321  0012221 12335678999444577776543       3599999987766 444


Q ss_pred             eecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          529 HVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                      .......       ....++|+|||++||++.....                .|++++.++
T Consensus       267 ~~~~~~~-------~~~~ia~dpdG~~LYvad~~~~----------------~I~~~~~d~  304 (433)
T 4hw6_A          267 VMMDTKG-------SNFHIVWHPTGDWAYIIYNGKH----------------CIYRVDYNR  304 (433)
T ss_dssp             EECSCCS-------SCEEEEECTTSSEEEEEETTTT----------------EEEEEEBCT
T ss_pred             eccCCCC-------CcccEEEeCCCCEEEEEeCCCC----------------EEEEEeCCC
Confidence            3322211       2235999999999988875432                799988763

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.69  E-value=0.00074  Score=70.00  Aligned_cols=165  Identities=10%  Similarity=0.170  Sum_probs=100.7

Q ss_pred             Cceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC---CCCccCcEE------
Q 039497          374 TAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE---TGNNAFPSC------  443 (642)
Q Consensus       374 ~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~------  443 (642)
                      ....++|+| +...|+++..        ....|+.++.  +     ++     ....+....   ......++|      
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~--------~~~~i~~ID~--~-----~~-----~v~~l~~~~~~~~~~p~~ia~~~~~~~  199 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYD--------GHKAIQLIDL--K-----NR-----MLSSPLNINTIPTNRIRSIAFNKKIEG  199 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEE--------TEEEEEEEET--T-----TT-----EEEEEECCTTSSCSBEEEEEECCCBTT
T ss_pred             CCCEEEEccCCCCEEEEEEC--------CCCeEEEEEC--C-----CC-----EEEEEEccCccccCCCcEEEEeecccc
Confidence            355778898 5777777763        2345777776  3     22     444443221   023566889      


Q ss_pred             -CCCCCeEEEEeCCCC----ceeEEEEECCC-Ccccc-c-eeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497          444 -SPDGKFLVFRSGRSG----HKNLFVLDAVN-GEFNG-D-IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL  515 (642)
Q Consensus       444 -SpDg~~l~~~~~~~g----~~~l~~~d~~~-g~~~~-~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l  515 (642)
                       +++|++|+++....+    ...+++++... |+... . ...+... .....++.+|+++.||+......       .|
T Consensus       200 ~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g-------~V  271 (496)
T 3kya_A          200 YADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKG-------QV  271 (496)
T ss_dssp             TBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTT-------EE
T ss_pred             cCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCC-------EE
Confidence             999998888876542    34688887543 34300 0 0122211 12346788998888888876543       49


Q ss_pred             EEEeCC-------CCce------------EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCC
Q 039497          516 YVIKPD-------GSGL------------RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQF  576 (642)
Q Consensus       516 ~~~d~~-------~~~~------------~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~  576 (642)
                      +++|++       ++..            +.+.......       ....++|+|+|+.||++.....            
T Consensus       272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~-------~p~~ia~~p~G~~lYvaD~~~h------------  332 (496)
T 3kya_A          272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS-------WEFQIFIHPTGKYAYFGVINNH------------  332 (496)
T ss_dssp             EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS-------CCEEEEECTTSSEEEEEETTTT------------
T ss_pred             EEEecccccccccCceeecccccccccccceeEecCCCC-------CceEEEEcCCCCEEEEEeCCCC------------
Confidence            999997       5543            2332222111       3467999999998888765432            


Q ss_pred             CCCCcEEEEEcCC
Q 039497          577 QPYGDLYVVKLDG  589 (642)
Q Consensus       577 ~~~~~l~~~~~~~  589 (642)
                          .|++++.++
T Consensus       333 ----~I~kid~dg  341 (496)
T 3kya_A          333 ----YFMRSDYDE  341 (496)
T ss_dssp             ----EEEEEEEET
T ss_pred             ----EEEEEecCC
Confidence                899977665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.69  E-value=0.0044  Score=61.07  Aligned_cols=198  Identities=17%  Similarity=0.227  Sum_probs=111.6

Q ss_pred             ceeEEEEECCCCCeeE-Eee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          353 NAGIKIAKSDGSKRWT-LIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~-l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      ...|+.++.+ ++... ... ...+..+...++|+ |++...       ..  .|+.++.        .+.    ....+
T Consensus       116 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~-------~~--~l~~~d~--------~g~----~~~~~  172 (330)
T 3hxj_A          116 DGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSN-------DN--YLYAINP--------DGT----EKWRF  172 (330)
T ss_dssp             TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECT-------TS--EEEEECT--------TSC----EEEEE
T ss_pred             CCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcC-------CC--EEEEECC--------CCC----EeEEE
Confidence            3578888887 44322 222 33345666666776 555432       23  3444443        111    22222


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      .... .....+...++|+ |++.+     ..|+.+| .+|+.   ..........+..+..+++|+ |++....+.    
T Consensus       173 ~~~~-~~~~~~~~d~~g~-l~v~t-----~~l~~~d-~~g~~---~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g----  236 (330)
T 3hxj_A          173 KTND-AITSAASIGKDGT-IYFGS-----DKVYAIN-PDGTE---KWNFYAGYWTVTRPAISEDGT-IYVTSLDGH----  236 (330)
T ss_dssp             ECSS-CCCSCCEECTTCC-EEEES-----SSEEEEC-TTSCE---EEEECCSSCCCSCCEECTTSC-EEEEETTTE----
T ss_pred             ecCC-CceeeeEEcCCCE-EEEEe-----CEEEEEC-CCCcE---EEEEccCCcceeceEECCCCe-EEEEcCCCe----
Confidence            2222 3455677777776 44443     3699999 55664   344443334466778888886 555554332    


Q ss_pred             CceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          511 EAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                          |+.++.++..........  .       ....+.+.++|. |++.+..+                 .|+.++.++.
T Consensus       237 ----l~~~~~~g~~~~~~~~~~--~-------~~~~~~~~~~g~-l~v~t~~g-----------------gl~~~d~~g~  285 (330)
T 3hxj_A          237 ----LYAINPDGTEKWRFKTGK--R-------IESSPVIGNTDT-IYFGSYDG-----------------HLYAINPDGT  285 (330)
T ss_dssp             ----EEEECTTSCEEEEEECSS--C-------CCSCCEECTTSC-EEEECTTC-----------------EEEEECTTSC
T ss_pred             ----EEEECCCCCEeEEeeCCC--C-------ccccceEcCCCe-EEEecCCC-----------------CEEEECCCCc
Confidence                899987665544443221  1       234566666665 66655432                 6899987555


Q ss_pred             ceeeccCCCCCCCCcEEecCCceEEeecCC
Q 039497          591 GLRRLTWNGYENGTPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       591 ~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~  620 (642)
                      .............++..+++|++++...+.
T Consensus       286 ~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G  315 (330)
T 3hxj_A          286 EKWNFETGSWIIATPVIDENGTIYFGTRNG  315 (330)
T ss_dssp             EEEEEECSSCCCSCCEECTTCCEEEECTTS
T ss_pred             EEEEEEcCCccccceEEcCCCEEEEEcCCC
Confidence            444444444556678888999988876543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.67  E-value=0.019  Score=56.61  Aligned_cols=166  Identities=17%  Similarity=0.118  Sum_probs=85.8

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------cCCceeeeeecC---CCEEEEEEcCCCcccCCCe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------DRTAFYNSWSPT---EKHVIYTSTGPIFQSERAT  402 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~  402 (642)
                      .++|.|||+ |++...  ....|++++.+++....+..        ......++++||   +.+||+....      ...
T Consensus        36 ~ia~~pdG~-llVter--~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~------~~~  106 (347)
T 3das_A           36 GLAPLPGGD-LLVSSR--DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS------ASD  106 (347)
T ss_dssp             EEEECTTSC-EEEEET--TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC------SSS
T ss_pred             EEEEcCCCc-EEEEEe--cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec------CCC
Confidence            568999998 434332  24689998877666544431        334668899996   5566554321      223


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceE---EccccCCCCccCcEECCCCCeEEEEeCC-----------CCceeEEEEECC
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVK---ILTKEETGNNAFPSCSPDGKFLVFRSGR-----------SGHKNLFVLDAV  468 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~SpDg~~l~~~~~~-----------~g~~~l~~~d~~  468 (642)
                      .+|.++..  ++... ....+.....   .+..........+.|.|||+ |+++...           .....|++++.+
T Consensus       107 ~~v~R~~~--~~~~~-~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          107 NRIVRMLY--DEKKP-SGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             EEEEEEEB--CTTSC-TTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             CEEEEEEe--CCCCc-ccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence            46777766  31000 0001100111   12211112334589999994 6665422           124589999987


Q ss_pred             CCcccc-----ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEE
Q 039497          469 NGEFNG-----DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVI  518 (642)
Q Consensus       469 ~g~~~~-----~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~  518 (642)
                       |+.+.     ..+....+..+...++|+|+|+ |++......    ...+|.++
T Consensus       183 -G~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~----~~deln~i  231 (347)
T 3das_A          183 -GEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQD----TWDELNAI  231 (347)
T ss_dssp             -SSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSS----SCEEEEEE
T ss_pred             -CCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCC----CCceeeEE
Confidence             33100     0122222333456679999876 555544322    23455555

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.67  E-value=0.072  Score=58.41  Aligned_cols=82  Identities=18%  Similarity=0.083  Sum_probs=50.3

Q ss_pred             eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV  539 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  539 (642)
                      ..|+.+|+.+|+.   +-.+... .......++..|..|++.+.++        .|+.+|.++++..--.......    
T Consensus       455 g~l~A~D~~tG~~---~W~~~~~-~~~~~g~~~tagglvf~gt~dg--------~l~a~D~~tG~~lw~~~~~~~~----  518 (689)
T 1yiq_A          455 GKLIAWDPVKQQA---AWEVPYV-TIFNGGTLSTAGNLVFEGSADG--------RVIAYAADTGEKLWEQPAASGV----  518 (689)
T ss_dssp             EEEEEEETTTTEE---EEEEEES-SSCCCCEEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC----
T ss_pred             eeEEEEECCCCCe---EeEccCC-CCccCccceECCCEEEEECCCC--------cEEEEECCCCccceeeeCCCCc----
Confidence            5799999999986   3333322 2223346677777776665443        3999999988764322222222    


Q ss_pred             ccccccceEEcCCCCEEEEEE
Q 039497          540 DRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       540 ~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                         ....+.|+.||+..+...
T Consensus       519 ---~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          519 ---MAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             ---CSCCEEEEETTEEEEEEE
T ss_pred             ---ccCceEEEECCEEEEEEE
Confidence               234578899998655444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.63  E-value=0.14  Score=57.25  Aligned_cols=211  Identities=11%  Similarity=0.125  Sum_probs=116.3

Q ss_pred             EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ..++|+.|.+...   ...|++++.++++.+.+..      ...+..+...++|+ |++.+.        ..+  +.++.
T Consensus       413 ~d~~g~~lWigt~---~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~--------~Gl--~~~~~  478 (795)
T 4a2l_A          413 VDEKKSLVYIGTH---AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL--------SAL--VRFNP  478 (795)
T ss_dssp             EETTTTEEEEEET---TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES--------SCE--EEEET
T ss_pred             EcCCCCEEEEEeC---cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec--------Cce--eEEeC
Confidence            3456663444332   2468889988877665542      23455566666665 444441        233  33333


Q ss_pred             ecCCCCCCCCCccccceEEcccc------CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---C
Q 039497          411 QLDPSDDNNREEIPCDVKILTKE------ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT---D  481 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~---~  481 (642)
                        +     .+     ....+...      ....+..+...++|+ |.+.+. .   .|++++.++++    . .+.   .
T Consensus       479 --~-----~~-----~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~---Gl~~~~~~~~~----~-~~~~~~~  536 (795)
T 4a2l_A          479 --E-----QR-----SFTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE-E---GLSVFKQEGLD----I-QKASILP  536 (795)
T ss_dssp             --T-----TT-----EEEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES-S---CEEEEEEETTE----E-EECCCSC
T ss_pred             --C-----CC-----eEEEccccccccccCCceEEEEEECCCCC-EEEEeC-C---ceEEEeCCCCe----E-EEecCCC
Confidence              1     12     23333211      012345566777776 444443 2   49999987665    2 222   1


Q ss_pred             C----CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEE
Q 039497          482 G----PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWL  556 (642)
Q Consensus       482 ~----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l  556 (642)
                      .    ...+..+..+++|+ |++....+         |+++|.++++.+..+.. +...      ..+..+...++|+ |
T Consensus       537 ~~~l~~~~i~~i~~d~~g~-lWigT~~G---------l~~~d~~~~~~~~~~~~~gl~~------~~i~~i~~d~~g~-l  599 (795)
T 4a2l_A          537 VSNVTKLFTNCIYEASNGI-IWVGTREG---------FYCFNEKDKQIKRYNTTNGLPN------NVVYGILEDSFGR-L  599 (795)
T ss_dssp             SCGGGGSCEEEEEECTTSC-EEEEESSC---------EEEEETTTTEEEEECGGGTCSC------SCEEEEEECTTSC-E
T ss_pred             CCCCCCCeeEEEEECCCCC-EEEEeCCC---------ceeECCCCCcEEEeCCCCCCch------hheEEEEECCCCC-E
Confidence            1    11234556677887 55555543         99999988877665432 1111      1345666777886 5


Q ss_pred             EEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCC------CCcEEecCCceEEeec
Q 039497          557 LFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYEN------GTPAWHPGNQLDLGKL  618 (642)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~------~~~~~s~dg~~~~~~~  618 (642)
                      ++....                  .|..++..++..+.++...+..      .+....++|+++++..
T Consensus       600 Wi~t~~------------------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~  649 (795)
T 4a2l_A          600 WLSTNR------------------GISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGI  649 (795)
T ss_dssp             EEEETT------------------EEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEET
T ss_pred             EEEcCC------------------ceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecC
Confidence            555532                  6888898887777666433221      2345567888877653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.63  E-value=0.012  Score=58.89  Aligned_cols=241  Identities=13%  Similarity=0.121  Sum_probs=119.2

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-------cCCceeeeeecC---CCEEEEEEcCCCcccCCCeE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-------DRTAFYNSWSPT---EKHVIYTSTGPIFQSERATV  403 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~~  403 (642)
                      .++|.|||+ |++... .  ..|++++.++.  ..+..       ......++++||   +..|+++..... .......
T Consensus        33 ~ia~~pdG~-l~V~e~-~--g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~-~~~~~~~  105 (354)
T 3a9g_A           33 SIAPLGGGR-YLVTER-P--GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFA-EGGHIRN  105 (354)
T ss_dssp             EEEEEETTE-EEEEET-T--TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC-GGGCEEE
T ss_pred             EEEEcCCCe-EEEEeC-C--CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccC-CCCCcce
Confidence            568899997 444432 2  68888875443  33321       235678899998   677776652100 0001124


Q ss_pred             EEEEEEeecCCCCCCCCCccccceEEc----cccCCCCccCcEECCCCCeEEEEeCCC-----------CceeEEEEECC
Q 039497          404 QIARVSFQLDPSDDNNREEIPCDVKIL----TKEETGNNAFPSCSPDGKFLVFRSGRS-----------GHKNLFVLDAV  468 (642)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~SpDg~~l~~~~~~~-----------g~~~l~~~d~~  468 (642)
                      .|+.++.  ++.   .. .+. ..+.+    ..........++|.|||+ |+++....           ....|++++.+
T Consensus       106 ~v~r~~~--~~~---~~-~~~-~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d  177 (354)
T 3a9g_A          106 RVIRGRL--DGS---TF-KLK-EVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEE  177 (354)
T ss_dssp             EEEEEEE--CSS---SC-CEE-EEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred             EEEEEEE--CCC---Cc-CcC-ccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence            5666665  210   00 110 11222    111111345689999995 66664321           12479999987


Q ss_pred             CCcccc-----ceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce---------------EEe
Q 039497          469 NGEFNG-----DIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL---------------RRI  528 (642)
Q Consensus       469 ~g~~~~-----~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~---------------~~l  528 (642)
                       |+.+.     ..+.+.........++|+|+...|++......    ...+|.++.. ++..               ..+
T Consensus       178 -G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~----~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~  251 (354)
T 3a9g_A          178 -GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPV----GHDEVNIILK-GGNYGWPLATGKAGRGEFVDPV  251 (354)
T ss_dssp             -SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSS----SCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCS
T ss_pred             -CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCC----CCcEEEEecC-CCcCCCCcccCCCCCCCCcCCE
Confidence             43100     01222222234456799994334666654432    2344555542 2110               011


Q ss_pred             eecCCCCCCCcccccccceEE-------cCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC-ce---eec-c
Q 039497          529 HVAGPEGSGDVDRERINHVCF-------SADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS-GL---RRL-T  596 (642)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~-------S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~~l-t  596 (642)
                      .......      ..+..+.|       ..+| .|++....+                ..|+++++++. ..   ..+ +
T Consensus       252 ~~~~~~~------~ap~G~~~y~g~~fp~~~G-~l~v~~~~~----------------~~v~~~~~~~~g~~~~~~~~~~  308 (354)
T 3a9g_A          252 IDTGSET------WAPSGASFVHGDMFPGLRG-WLLIACLRG----------------SMLAAVNFGDNMEVRKISTFFK  308 (354)
T ss_dssp             EECTTCC------CCEEEEEECCSSSCGGGTT-EEEEEETTT----------------TEEEEEEECGGGCEEEEEEECT
T ss_pred             eecCCCC------cCCcceEEECCCCCcccCC-cEEEEEcCC----------------CEEEEEEECCCCcccceeeecc
Confidence            1000000      02334455       2456 344444322                28999988753 22   233 2


Q ss_pred             CCCCCCCCcEEecCCceEEeec
Q 039497          597 WNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       597 ~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                      ........+++.|||.++++..
T Consensus       309 ~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          309 NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCeeEEEECCCCcEEEEEe
Confidence            2233457889999998887764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.51  E-value=0.0069  Score=56.18  Aligned_cols=191  Identities=11%  Similarity=0.013  Sum_probs=105.8

Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEE
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      .....+.|++  ..|+.+..      ..+...|..++.  +     +++    ....+....  ........++|+.|+.
T Consensus        21 ~ftqGL~~~~--~~LyestG------~~g~S~v~~vD~--~-----tgk----v~~~~~l~~--~~fgeGi~~~~~~ly~   79 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTG------ETGRSSVRKVDL--E-----TGR----ILQRAEVPP--PYFGAGIVAWRDRLIQ   79 (243)
T ss_dssp             CCEEEEEEET--TEEEEEEC------CTTSCEEEEEET--T-----TCC----EEEEEECCT--TCCEEEEEEETTEEEE
T ss_pred             cccccEEEEC--CEEEEECC------CCCCceEEEEEC--C-----CCC----EEEEEeCCC--CcceeEEEEeCCEEEE
Confidence            3455677875  56666652      233334444444  2     231    333333222  2222345566888888


Q ss_pred             EeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497          453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG  532 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  532 (642)
                      ...+++  .++++|.++.+.   +..+....   ....+++||+.|+.+...        ..|+++|.++.+...-..-.
T Consensus        80 ltw~~~--~v~v~D~~tl~~---~~ti~~~~---~Gwglt~dg~~L~vSdgs--------~~l~~iDp~t~~~~~~I~V~  143 (243)
T 3mbr_X           80 LTWRNH--EGFVYDLATLTP---RARFRYPG---EGWALTSDDSHLYMSDGT--------AVIRKLDPDTLQQVGSIKVT  143 (243)
T ss_dssp             EESSSS--EEEEEETTTTEE---EEEEECSS---CCCEEEECSSCEEEECSS--------SEEEEECTTTCCEEEEEECE
T ss_pred             EEeeCC--EEEEEECCcCcE---EEEEeCCC---CceEEeeCCCEEEEECCC--------CeEEEEeCCCCeEEEEEEEc
Confidence            876543  899999999886   56665432   234667889888777542        24999999887654322211


Q ss_pred             CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceee-ccCC------------C
Q 039497          533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR-LTWN------------G  599 (642)
Q Consensus       533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-lt~~------------~  599 (642)
                      ..+   ..-.....+.|. +|+ |+...-..                ..|.++|..++++.. +...            .
T Consensus       144 ~~g---~~~~~lNeLe~~-~G~-lyanvw~s----------------~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~  202 (243)
T 3mbr_X          144 AGG---RPLDNLNELEWV-NGE-LLANVWLT----------------SRIARIDPASGKVVAWIDLQALVPDADALTDST  202 (243)
T ss_dssp             ETT---EECCCEEEEEEE-TTE-EEEEETTT----------------TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTT
T ss_pred             cCC---cccccceeeEEe-CCE-EEEEECCC----------------CeEEEEECCCCCEEEEEECCcCccccccccCCc
Confidence            111   000012334443 665 55433221                289999998887542 2211            1


Q ss_pred             C-CCCCcEEecCC-ceEEeecCCC
Q 039497          600 Y-ENGTPAWHPGN-QLDLGKLRLE  621 (642)
Q Consensus       600 ~-~~~~~~~s~dg-~~~~~~~~~~  621 (642)
                      . ....++|+|++ ++|++...-.
T Consensus       203 ~~vlNGIA~d~~~~~lfVTGK~wp  226 (243)
T 3mbr_X          203 NDVLNGIAFDAEHDRLFVTGKRWP  226 (243)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTCS
T ss_pred             CCceEEEEEcCCCCEEEEECCCCC
Confidence            1 12468999976 6778876644

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.49  E-value=0.0023  Score=64.11  Aligned_cols=175  Identities=13%  Similarity=0.077  Sum_probs=94.0

Q ss_pred             ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---CCCCcccceeEecC---CCEEE
Q 039497          426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT---DGPWIDTMPSWSPK---GDLIA  499 (642)
Q Consensus       426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~---~~~~~~~~~~~spd---G~~l~  499 (642)
                      +.+.+...- .....++|.|||+ |+++.. .  ..|++++  +|+. ..+..+.   ........++++||   +++||
T Consensus        22 ~~~~va~~l-~~P~~ia~~pdG~-l~V~e~-~--g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lY   93 (352)
T 2ism_A           22 RVEEVVGGL-EVPWALAFLPDGG-MLIAER-P--GRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVY   93 (352)
T ss_dssp             CEEEEECCC-SCEEEEEECTTSC-EEEEET-T--TEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred             EEEEEECCC-CCceEEEEcCCCe-EEEEeC-C--CeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEE
Confidence            334444332 3556789999998 555543 3  4788888  3552 0011121   22234566799999   77777


Q ss_pred             EEecCCCCCCCCceeEEEEeCCCCce---EEeee-cCC-CCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497          500 FSSNRHNPDNVEAFSLYVIKPDGSGL---RRIHV-AGP-EGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN  574 (642)
Q Consensus       500 ~~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~-~~~-~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~  574 (642)
                      +.......  .....|++++++++..   +.+.. ... ..    .......++|+||| +||++..+.+..+.  + ..
T Consensus        94 v~~~~~~~--~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~----~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~--~-~d  163 (352)
T 2ism_A           94 AYRTVAEG--GLRNQVVRLRHLGERGVLDRVVLDGIPARPH----GLHSGGRIAFGPDG-MLYVTTGEVYEREL--A-QD  163 (352)
T ss_dssp             EEEEECTT--SSEEEEEEEEECSSCEEEEEEEEEEECCCTT----CCCCCCCEEECTTS-CEEEECCCTTCGGG--G-GC
T ss_pred             EEEecCCC--CCccEEEEEEeCCCCcCceEEEEEeCCCCCC----CCcCCceEEECCCC-CEEEEECCCCCCcc--c-cC
Confidence            77653210  1235699999876532   22221 110 00    00134689999999 57777543321100  0 00


Q ss_pred             CCCCCCcEEEEEcCCC-------------ceeeccCCCCCCCCcEEec-CCceEEeec
Q 039497          575 QFQPYGDLYVVKLDGS-------------GLRRLTWNGYENGTPAWHP-GNQLDLGKL  618 (642)
Q Consensus       575 ~~~~~~~l~~~~~~~~-------------~~~~lt~~~~~~~~~~~s~-dg~~~~~~~  618 (642)
                      .-.....|++++.++.             ....+...-.....++|+| +|++|++..
T Consensus       164 ~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          164 LASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             TTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE
T ss_pred             CCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc
Confidence            0002358999998872             2222222223356789999 788887753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.48  E-value=0.0077  Score=60.22  Aligned_cols=158  Identities=9%  Similarity=0.097  Sum_probs=80.6

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe------e--cCCceeeeeecC---CCEEEEEEcCCCcccCCCe
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI------K--DRTAFYNSWSPT---EKHVIYTSTGPIFQSERAT  402 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~------~--~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~  402 (642)
                      .+.|.|||++|++...   ...|++++.++.....+.      .  ......++++||   +.+|++...... ..+...
T Consensus        22 ~i~~~pdG~~l~V~e~---~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~-~~g~~~   97 (353)
T 2g8s_A           22 ALAFLPDNHGMLITLR---GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG-DDGKAG   97 (353)
T ss_dssp             EEEECSTTCCEEEEET---TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC-SSSCEE
T ss_pred             EEEEcCCCCEEEEEeC---CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCC-CCCCce
Confidence            5689999985444432   257888886553211111      1  234567899997   677776643100 000114


Q ss_pred             EEEEEEEeecCCCCCCCCCccccceEEc-cccC-----CCCccCcEECCCCCeEEEEeCCCC-----------ceeEEEE
Q 039497          403 VQIARVSFQLDPSDDNNREEIPCDVKIL-TKEE-----TGNNAFPSCSPDGKFLVFRSGRSG-----------HKNLFVL  465 (642)
Q Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~-----~~~~~~~~~SpDg~~l~~~~~~~g-----------~~~l~~~  465 (642)
                      ..|+.++.  ++    +...+. ..+.+ ...+     ......+.|.||| +|+++....+           ...|+++
T Consensus        98 ~~v~r~~~--~~----~~~~~~-~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri  169 (353)
T 2g8s_A           98 TAVGYGRL--SD----DLSKVT-DFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRL  169 (353)
T ss_dssp             EEEEEEEE--CT----TSSBEE-EEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEE
T ss_pred             eEEEEEEE--CC----CCCCCC-ceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEE
Confidence            45666655  21    111111 12222 1111     0123568999999 6777653322           2379999


Q ss_pred             ECCCCcccc----------ceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497          466 DAVNGEFNG----------DIRQLTDGPWIDTMPSWSPKGDLIAFSSNR  504 (642)
Q Consensus       466 d~~~g~~~~----------~~~~l~~~~~~~~~~~~spdG~~l~~~~~~  504 (642)
                      +.++ +.+.          ..+...........++|+|+...|++....
T Consensus       170 ~~dG-~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g  217 (353)
T 2g8s_A          170 TDQG-EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG  217 (353)
T ss_dssp             ETTS-CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred             CCCC-CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC
Confidence            9874 3100          012222222344567999944456666543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.44  E-value=0.18  Score=53.86  Aligned_cols=83  Identities=11%  Similarity=0.010  Sum_probs=45.8

Q ss_pred             ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497          459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD  538 (642)
Q Consensus       459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  538 (642)
                      ...|+.+|+.+|+.   +-.+.... ..........+..|++.+.++        .|+.+|.++++..--...+...   
T Consensus       443 ~g~l~a~D~~tG~~---~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg--------~l~a~D~~tG~~lw~~~~~~~~---  507 (571)
T 2ad6_A          443 MGQIRAFDLTTGKA---KWTKWEKF-AAWGGTLYTKGGLVWYATLDG--------YLKALDNKDGKELWNFKMPSGG---  507 (571)
T ss_dssp             CEEEEEECTTTCCE---EEEEEESS-CCCSBCEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC---
T ss_pred             CCeEEEEECCCCCE---EEEecCCC-CccceeEEECCCEEEEEcCCC--------eEEEEECCCCCEEEEEeCCCCc---
Confidence            35899999988885   33332221 112223344556676655443        4999999888765333322111   


Q ss_pred             cccccccceEEcCCCCEEEEEE
Q 039497          539 VDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       539 ~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                          ....+.++.||+.++...
T Consensus       508 ----~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          508 ----IGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             ----CSCCEEEEETTEEEEEEE
T ss_pred             ----EeeeEEEEECCEEEEEEE
Confidence                123455678887554443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.43  E-value=0.0034  Score=63.20  Aligned_cols=170  Identities=12%  Similarity=0.039  Sum_probs=102.5

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCC-----------e-eEEeecCCceeeeeecCCCEEEEEEcCCCcccCC
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-----------R-WTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSER  400 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-----------~-~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  400 (642)
                      ..+++++....++....    ..+.+++++.-.           . ..+.... +.++.|  |++.|+...        +
T Consensus        41 nlLais~~~gll~a~~~----~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~--------~  105 (388)
T 1xip_A           41 QNLDISNSKSLFVAASG----SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVST--------R  105 (388)
T ss_dssp             BCEEEETTTTEEEEEET----TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEE--------S
T ss_pred             cEEEEcCCCCEEEEeCC----CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEc--------C
Confidence            34578888886655432    356666543221           1 1222244 889999  999998883        5


Q ss_pred             CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497          401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT  480 (642)
Q Consensus       401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~  480 (642)
                      +.+++|++..  .      .     ....+.... ..+..+.+.+..  ++...   ....|++|++++++.    ..+.
T Consensus       106 ~~l~v~dv~s--l------~-----~~~~~~~~~-~~v~~i~~~~p~--~av~~---~dG~L~v~dl~~~~~----~~~~  162 (388)
T 1xip_A          106 NALYSLDLEE--L------S-----EFRTVTSFE-KPVFQLKNVNNT--LVILN---SVNDLSALDLRTKST----KQLA  162 (388)
T ss_dssp             SEEEEEESSS--T------T-----CEEEEEECS-SCEEEEEECSSE--EEEEE---TTSEEEEEETTTCCE----EEEE
T ss_pred             CcEEEEEchh--h------h-----ccCccceee-cceeeEEecCCC--EEEEE---CCCCEEEEEccCCcc----cccc
Confidence            7899998855  1      1     112222222 233444555432  55554   234899999998774    4432


Q ss_pred             CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce---EEeeec-------CCCCCCCcccccccceEEc
Q 039497          481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL---RRIHVA-------GPEGSGDVDRERINHVCFS  550 (642)
Q Consensus       481 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~-------~~~~~~~~~~~~~~~~~~S  550 (642)
                         ..+..++|||+|  +++...++.        +.+++.++++.   ..|...       +...       .+.++.|.
T Consensus       163 ---~~Vs~v~WSpkG--~~vg~~dg~--------i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~-------~V~sI~wl  222 (388)
T 1xip_A          163 ---QNVTSFDVTNSQ--LAVLLKDRS--------FQSFAWRNGEMEKQFEFSLPSELEELPVEEY-------SPLSVTIL  222 (388)
T ss_dssp             ---ESEEEEEECSSE--EEEEETTSC--------EEEEEEETTEEEEEEEECCCHHHHTSCTTTS-------EEEEEEES
T ss_pred             ---CCceEEEEcCCc--eEEEEcCCc--------EEEEcCCCccccccceecCCcccccccCCCe-------eEEEEEEe
Confidence               357789999999  455555543        77778877773   334210       1122       67889999


Q ss_pred             CCCCEEEEEE
Q 039497          551 ADGEWLLFTA  560 (642)
Q Consensus       551 ~Dg~~l~~~~  560 (642)
                      +++++++.-.
T Consensus       223 ~~~~flv~y~  232 (388)
T 1xip_A          223 SPQDFLAVFG  232 (388)
T ss_dssp             SSSEEEEEEE
T ss_pred             cCCeEEEEEc
Confidence            9999876444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.39  E-value=0.28  Score=54.86  Aligned_cols=201  Identities=11%  Similarity=0.037  Sum_probs=108.9

Q ss_pred             eeEEEEECCCCCeeEEee----------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcc
Q 039497          354 AGIKIAKSDGSKRWTLIK----------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI  423 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  423 (642)
                      ..|..++..++.......          ...+.++...++|+.|++.+.       ...+.+  ++.  +     ++   
T Consensus       377 ~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~-------~~Gl~~--~d~--~-----~~---  437 (795)
T 4a2l_A          377 GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH-------AGGLSI--LHR--N-----SG---  437 (795)
T ss_dssp             SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET-------TTEEEE--EET--T-----TC---
T ss_pred             CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC-------cCceeE--EeC--C-----CC---
Confidence            457777777666544432          123555666677764666553       234443  333  1     12   


Q ss_pred             ccceEEcccc----CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-------CCcccceeEe
Q 039497          424 PCDVKILTKE----ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-------PWIDTMPSWS  492 (642)
Q Consensus       424 ~~~~~~l~~~----~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-------~~~~~~~~~s  492 (642)
                        ..+.+...    ....+..+...++|+ |.+.+. .   .|++++.++++.    +.+...       ...+..+..+
T Consensus       438 --~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~---Gl~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d  506 (795)
T 4a2l_A          438 --QVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL-S---ALVRFNPEQRSF----TTIEKEKDGTPVVSKQITTLFRD  506 (795)
T ss_dssp             --CEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES-S---CEEEEETTTTEE----EECCBCTTCCBCCCCCEEEEEEC
T ss_pred             --cEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec-C---ceeEEeCCCCeE----EEccccccccccCCceEEEEEEC
Confidence              33333221    112345556666775 444443 2   599999988774    544321       1234455677


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      ++|+ |++....+         |++++.++++. .+... ...+   .....+..+..+++|+ |++....         
T Consensus       507 ~~g~-lWigt~~G---------l~~~~~~~~~~-~~~~~~~~~~---l~~~~i~~i~~d~~g~-lWigT~~---------  562 (795)
T 4a2l_A          507 SHKR-LWIGGEEG---------LSVFKQEGLDI-QKASILPVSN---VTKLFTNCIYEASNGI-IWVGTRE---------  562 (795)
T ss_dssp             TTCC-EEEEESSC---------EEEEEEETTEE-EECCCSCSCG---GGGSCEEEEEECTTSC-EEEEESS---------
T ss_pred             CCCC-EEEEeCCc---------eEEEeCCCCeE-EEecCCCCCC---CCCCeeEEEEECCCCC-EEEEeCC---------
Confidence            7886 55555532         99999887765 33311 0000   0001345667778887 4444432         


Q ss_pred             CCCCCCCCCcEEEEEcCCCceeeccCCCC----CCCCcEEecCCceEEee
Q 039497          572 WPNQFQPYGDLYVVKLDGSGLRRLTWNGY----ENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~~~~lt~~~~----~~~~~~~s~dg~~~~~~  617 (642)
                               .|+.++..++..+.++...+    .+.++...++|+++++.
T Consensus       563 ---------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          563 ---------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             ---------CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             ---------CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence                     58888888777666654221    23345566778777665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.38  E-value=0.25  Score=54.13  Aligned_cols=81  Identities=10%  Similarity=-0.042  Sum_probs=49.2

Q ss_pred             eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497          513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL  592 (642)
Q Consensus       513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  592 (642)
                      ..|+.+|+.+++..--......         .....++..|..|++.+.+                 +.|+.+|..++++
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~---------~~~g~~~tagglvf~gt~d-----------------g~l~a~D~~tG~~  508 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTI---------FNGGTLSTAGNLVFEGSAD-----------------GRVIAYAADTGEK  508 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS---------CCCCEEEETTTEEEEECTT-----------------SEEEEEETTTCCE
T ss_pred             eeEEEEECCCCCeEeEccCCCC---------ccCccceECCCEEEEECCC-----------------CcEEEEECCCCcc
Confidence            5699999998876533322211         1234667777766665433                 2899999887764


Q ss_pred             e-eccCC-CCCCCCcEEecCCceEEeecC
Q 039497          593 R-RLTWN-GYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       593 ~-~lt~~-~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      . ++... +....-+.|+.||+.+++...
T Consensus       509 lw~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          509 LWEQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence            3 33322 223344578899977765443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.38  E-value=0.21  Score=53.30  Aligned_cols=82  Identities=5%  Similarity=-0.073  Sum_probs=45.7

Q ss_pred             ceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497          512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG  591 (642)
Q Consensus       512 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  591 (642)
                      ...|+.+|+.+++..--......         .....+...+..|++.+.+                 ..|+.+|..+++
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~---------~~~~~~~t~gg~v~~g~~d-----------------g~l~a~D~~tG~  496 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFA---------AWGGTLYTKGGLVWYATLD-----------------GYLKALDNKDGK  496 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSC---------CCSBCEEETTTEEEEECTT-----------------SEEEEEETTTCC
T ss_pred             CCeEEEEECCCCCEEEEecCCCC---------ccceeEEECCCEEEEEcCC-----------------CeEEEEECCCCC
Confidence            35799999988876432222211         1222334455666665433                 289999988776


Q ss_pred             ee-eccCCCCCC-CCcEEecCCceEEeecC
Q 039497          592 LR-RLTWNGYEN-GTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       592 ~~-~lt~~~~~~-~~~~~s~dg~~~~~~~~  619 (642)
                      +. ++....... ....|..||+.++....
T Consensus       497 ~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~  526 (571)
T 2ad6_A          497 ELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             EEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEEEEeCCCCcEeeeEEEEECCEEEEEEEC
Confidence            43 333332222 23456689977765543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.33  E-value=0.0059  Score=61.06  Aligned_cols=164  Identities=12%  Similarity=0.053  Sum_probs=91.1

Q ss_pred             CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC---CCCCcccceeEecC---CCEEEEEecC-CCCC
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT---DGPWIDTMPSWSPK---GDLIAFSSNR-HNPD  508 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~---~~~~~~~~~~~spd---G~~l~~~~~~-~~~~  508 (642)
                      .....++|.|||+ |+++.. .  ..|++++.+ |+.  .+..+.   ........++++||   +.+||+.... ... 
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~-~--g~I~~~d~~-G~~--~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~-  100 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTER-P--GRLVLISPS-GKK--LVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG-  100 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEET-T--TEEEEECSS-CEE--EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG-
T ss_pred             CCCeEEEEcCCCe-EEEEeC-C--CEEEEEeCC-Cce--EeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC-
Confidence            4556789999997 555543 3  478888743 541  022221   22234566799998   6677776542 100 


Q ss_pred             CCCceeEEEEeCCCC--c---eEEeee---cCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497          509 NVEAFSLYVIKPDGS--G---LRRIHV---AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG  580 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~--~---~~~l~~---~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  580 (642)
                      ......|++++++++  .   .+.+..   .....       ....+.|.|||+ ||++..+.+....  + ...-....
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h-------~~~~l~~~pDG~-Lyvt~G~~~~~~~--~-~d~~~~~G  169 (354)
T 3a9g_A          101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH-------NGGRIRFGPDGM-LYITTGDAADPRL--A-QDLSSLAG  169 (354)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC-------CCCCEEECTTSC-EEEECCCTTCGGG--G-TCTTCCSS
T ss_pred             CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc-------CCceEEECCCCc-EEEEECCCCCCcc--c-cCCCCCCe
Confidence            002256999998765  1   222221   11111       236799999996 7776543221100  0 00001235


Q ss_pred             cEEEEEcCCC--------ceeeccCCCCCCCCcEEec-CCceEEeec
Q 039497          581 DLYVVKLDGS--------GLRRLTWNGYENGTPAWHP-GNQLDLGKL  618 (642)
Q Consensus       581 ~l~~~~~~~~--------~~~~lt~~~~~~~~~~~s~-dg~~~~~~~  618 (642)
                      .|++++.++.        ....+...-.....++|+| +|++|++..
T Consensus       170 ~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          170 KILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             EEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEEC
T ss_pred             EEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEec
Confidence            8999998875        2233333334456889999 788887753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.31  E-value=0.004  Score=62.29  Aligned_cols=173  Identities=13%  Similarity=0.060  Sum_probs=90.9

Q ss_pred             CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC----CCCCCcccceeEecC---CCEEEEEecCCCCC
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL----TDGPWIDTMPSWSPK---GDLIAFSSNRHNPD  508 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l----~~~~~~~~~~~~spd---G~~l~~~~~~~~~~  508 (642)
                      .....++|.|||++|+++.. .  ..|++++.+ |+....+..+    .........++++||   +.+||+........
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~-~--G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLR-G--GELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEET-T--TEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             CCcEEEEEcCCCCEEEEEeC-C--ceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            35567899999986555543 3  379999865 4420001111    111223356799997   66777765432100


Q ss_pred             CCCceeEEEEeCCCC-----ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497          509 NVEAFSLYVIKPDGS-----GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY  583 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  583 (642)
                      ......|++++++.+     ..+.+.......  .........+.|+||| +||++..+.+..+  .+. ..-.....|+
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~--~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~--~~q-~~~~~~g~I~  167 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKL--STGNHFGGRLVFDGKG-YLFIALGENNQRP--TAQ-DLDKLQGKLV  167 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCC--BSSSCCCCCEEECSSS-EEEEEECCTTCGG--GGG-CTTSCTTEEE
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCC--CCCcccCccEEECCCC-cEEEEECCCCCCC--ccC-CCCCCCeEEE
Confidence            001457888888654     222232211000  0000124679999999 6777764432100  000 0000235899


Q ss_pred             EEEcCCCc-------------eeeccCCCCCCCCcEEec-CCceEEeec
Q 039497          584 VVKLDGSG-------------LRRLTWNGYENGTPAWHP-GNQLDLGKL  618 (642)
Q Consensus       584 ~~~~~~~~-------------~~~lt~~~~~~~~~~~s~-dg~~~~~~~  618 (642)
                      +++.++..             ...+...-.....++|+| +|++|++..
T Consensus       168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~  216 (353)
T 2g8s_A          168 RLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH  216 (353)
T ss_dssp             EEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence            99988752             222222223346789999 788887654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.28  E-value=0.062  Score=58.72  Aligned_cols=139  Identities=12%  Similarity=0.069  Sum_probs=79.9

Q ss_pred             ccCCceEecccCCCccCCceeCC-CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec---CCCc---ceEe
Q 039497          127 LKASKFTRLTPYGVVDYSPSVSY-SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE---RGGW---PTWS  199 (642)
Q Consensus       127 ~~~~~~~~lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~---~~ws  199 (642)
                      +..++...+...+....+.++.| +|+.+++........... ......++++++.+++.+++...   ...+   .++.
T Consensus       173 p~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~-~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~  251 (656)
T 1k3i_A          173 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGS-PGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD  251 (656)
T ss_dssp             TTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSC-CCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC
T ss_pred             CCCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccC-CCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCC
Confidence            34555555554444445677888 888888876543211111 11235789999999987766542   2222   3667


Q ss_pred             eCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCC--CccccceeecCCcEEEEEEe-ccCCceeeEEEEEe
Q 039497          200 GDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPG--VHCFTPAAFHDGKRLAVATR-RKNRNFRHIEIYDL  276 (642)
Q Consensus       200 pdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~SpdG~~l~~~~~-~~~~~~~~i~~~d~  276 (642)
                      .||++|+.......  .++.+|+.+.        .-..+....  ......++.+||+.+++... ..+.....+++||.
T Consensus       252 ~~g~lyv~GG~~~~--~v~~yd~~t~--------~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          252 GNGQIVVTGGNDAK--KTSLYDSSSD--------SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             TTSCEEEECSSSTT--CEEEEEGGGT--------EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             CCCCEEEeCCCCCC--ceEEecCcCC--------ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence            89998888722222  6888888776        444443322  11222344579987666431 22223456777776

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.23  E-value=0.014  Score=57.35  Aligned_cols=136  Identities=22%  Similarity=0.328  Sum_probs=80.3

Q ss_pred             CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEE
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY  516 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~  516 (642)
                      ....+...++|+ |++.+.   ...|+.+|.+ |+.   .............+...++|+ |++..  ..        |+
T Consensus       138 ~~~~~~~~~~g~-l~vgt~---~~~l~~~d~~-g~~---~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~--------l~  198 (330)
T 3hxj_A          138 IYATPIVSEDGT-IYVGSN---DNYLYAINPD-GTE---KWRFKTNDAITSAASIGKDGT-IYFGS--DK--------VY  198 (330)
T ss_dssp             CCSCCEECTTSC-EEEECT---TSEEEEECTT-SCE---EEEEECSSCCCSCCEECTTCC-EEEES--SS--------EE
T ss_pred             eeeeeEEcCCCE-EEEEcC---CCEEEEECCC-CCE---eEEEecCCCceeeeEEcCCCE-EEEEe--CE--------EE
Confidence            455677777876 444442   2479999998 764   333333333455677778887 55555  32        99


Q ss_pred             EEeCCCCceE-EeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497          517 VIKPDGSGLR-RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRL  595 (642)
Q Consensus       517 ~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  595 (642)
                      .+|. +++.. .... . ..       .+..+..+++|. |++.+..+                 .|+.++.++......
T Consensus       199 ~~d~-~g~~~~~~~~-~-~~-------~~~~~~~~~~g~-l~v~t~~~-----------------gl~~~~~~g~~~~~~  250 (330)
T 3hxj_A          199 AINP-DGTEKWNFYA-G-YW-------TVTRPAISEDGT-IYVTSLDG-----------------HLYAINPDGTEKWRF  250 (330)
T ss_dssp             EECT-TSCEEEEECC-S-SC-------CCSCCEECTTSC-EEEEETTT-----------------EEEEECTTSCEEEEE
T ss_pred             EECC-CCcEEEEEcc-C-Cc-------ceeceEECCCCe-EEEEcCCC-----------------eEEEECCCCCEeEEe
Confidence            9994 44332 2221 1 12       356778888875 55544322                 688887666665555


Q ss_pred             cCCCCCCCCcEEecCCceEEeecC
Q 039497          596 TWNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       596 t~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      .........+...++|.++++..+
T Consensus       251 ~~~~~~~~~~~~~~~g~l~v~t~~  274 (330)
T 3hxj_A          251 KTGKRIESSPVIGNTDTIYFGSYD  274 (330)
T ss_dssp             ECSSCCCSCCEECTTSCEEEECTT
T ss_pred             eCCCCccccceEcCCCeEEEecCC
Confidence            544444456677777777766543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.13  E-value=0.0059  Score=63.25  Aligned_cols=181  Identities=13%  Similarity=0.107  Sum_probs=97.3

Q ss_pred             ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC------CCCcccceeEecC---CC
Q 039497          426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD------GPWIDTMPSWSPK---GD  496 (642)
Q Consensus       426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~------~~~~~~~~~~spd---G~  496 (642)
                      +.+.+...- .....++|.|||+.+ ++... + ..|++++..+|+. ..+..+..      .......++|+||   +.
T Consensus        18 ~~~~~a~~l-~~P~~~a~~pdG~l~-V~e~~-g-g~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g   92 (454)
T 1cru_A           18 DKKVILSNL-NKPHALLWGPDNQIW-LTERA-T-GKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP   92 (454)
T ss_dssp             CEEEEECCC-SSEEEEEECTTSCEE-EEETT-T-CEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred             EEEEEECCC-CCceEEEEcCCCcEE-EEEcC-C-CEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence            444444433 456678999999844 44332 2 3699998766653 11122222      1223346899997   77


Q ss_pred             EEEEEecCCC----C-CCCCceeEEEEeCCCC-----ceEEeee-cCCCCCCCcccccccceEEcCCCCEEEEEEecCCc
Q 039497          497 LIAFSSNRHN----P-DNVEAFSLYVIKPDGS-----GLRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLFTANLGAV  565 (642)
Q Consensus       497 ~l~~~~~~~~----~-~~~~~~~l~~~d~~~~-----~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~  565 (642)
                      +||+......    . .......|++++++.+     ..+.|.. .....     ......++|.|||+ ||++..+.+.
T Consensus        93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~-----~H~~~~l~f~pDG~-Lyv~~Gd~~~  166 (454)
T 1cru_A           93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK-----DHQSGRLVIGPDQK-IYYTIGDQGR  166 (454)
T ss_dssp             EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS-----SCCEEEEEECTTSC-EEEEECCTTT
T ss_pred             EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC-----CCCCCeEeECCCCe-EEEEECCCCC
Confidence            7877765310    0 0001467888887543     1222322 11110     01346899999996 6666544321


Q ss_pred             c-----cCCC-----C------CCCCCCCCCcEEEEEcCCC-----------ceeeccCCCCCCCCcEEecCCceEEee
Q 039497          566 M-----AEPV-----S------WPNQFQPYGDLYVVKLDGS-----------GLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       566 ~-----~~~~-----~------~~~~~~~~~~l~~~~~~~~-----------~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      .     +++.     +      -...-...+.|++++.++.           ....+...-.....++|.|+|+++++.
T Consensus       167 ~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d  245 (454)
T 1cru_A          167 NQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSE  245 (454)
T ss_dssp             TSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEE
T ss_pred             CCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEe
Confidence            1     0000     0      0000012468999999886           223333333445678999999888775

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.11  E-value=0.27  Score=49.12  Aligned_cols=68  Identities=13%  Similarity=0.115  Sum_probs=41.9

Q ss_pred             CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc
Q 039497          446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG  524 (642)
Q Consensus       446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~  524 (642)
                      ++..|++....   ..|+.+|..+|+.   +...... ......+...  +..|++....+        .|+.+|.++++
T Consensus       276 ~~~~l~~~~~~---g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g--------~l~~~d~~tG~  339 (376)
T 3q7m_A          276 DGNRIYLVDQN---DRVMALTIDGGVT---LWTQSDLLHRLLTSPVLY--NGNLVVGDSEG--------YLHWINVEDGR  339 (376)
T ss_dssp             ETTEEEEEETT---CCEEEEETTTCCE---EEEECTTTTSCCCCCEEE--TTEEEEECTTS--------EEEEEETTTCC
T ss_pred             ECCEEEEEcCC---CeEEEEECCCCcE---EEeecccCCCcccCCEEE--CCEEEEEeCCC--------eEEEEECCCCc
Confidence            45677776642   3799999999985   2222211 1223344443  45677776554        39999998887


Q ss_pred             eEEee
Q 039497          525 LRRIH  529 (642)
Q Consensus       525 ~~~l~  529 (642)
                      ..-..
T Consensus       340 ~~~~~  344 (376)
T 3q7m_A          340 FVAQQ  344 (376)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65433

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=96.88  E-value=0.076  Score=58.06  Aligned_cols=215  Identities=9%  Similarity=0.012  Sum_probs=111.1

Q ss_pred             EEcCCCCEEEEEec--CCCceeEEEEECCCCCeeEEeec-C---------CceeeeeecCCCEEEEEEc-CCC-cccCCC
Q 039497          336 SFSPDGGLIVFNHD--FELNAGIKIAKSDGSKRWTLIKD-R---------TAFYNSWSPTEKHVIYTST-GPI-FQSERA  401 (642)
Q Consensus       336 ~~spdg~~l~~~~~--~~~~~~l~~~d~~~~~~~~l~~~-~---------~~~~~~~spdg~~l~~~~~-~~~-~~~~~~  401 (642)
                      .++|||+++++.-.  +.....+.++|+++++...-... .         ....+.|. |++.++|... ++. ......
T Consensus       136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~  214 (711)
T 4hvt_A          136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLY  214 (711)
T ss_dssp             ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSS
T ss_pred             ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCC
Confidence            37999999999443  34456788899998864321101 0         01344897 6666766542 221 111112


Q ss_pred             eEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCe----EEEE-eCCCCceeEEEEECCC--Cccc
Q 039497          402 TVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKF----LVFR-SGRSGHKNLFVLDAVN--GEFN  473 (642)
Q Consensus       402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~----l~~~-~~~~g~~~l~~~d~~~--g~~~  473 (642)
                      ...+|....        |. ... ....+.... ......+..++|+++    ++.. +...-..++|+.+.+.  ++  
T Consensus       215 ~~~v~~~~~--------Gt-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--  282 (711)
T 4hvt_A          215 PNSLYIWKR--------GE-SIE-KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK--  282 (711)
T ss_dssp             BCEEEEEET--------TS-CGG-GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE--
T ss_pred             CCEEEEEEC--------CC-ChH-HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc--
Confidence            234444444        11 111 223333222 112234567888885    3332 2222346899998764  44  


Q ss_pred             cceeeCCCCCCcccceeEecCCCEEEEEecCCC--CCCCCceeEEEEeCCCC--------ceEEeeecCCCCCCCccccc
Q 039497          474 GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN--PDNVEAFSLYVIKPDGS--------GLRRIHVAGPEGSGDVDRER  543 (642)
Q Consensus       474 ~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~--~~~~~~~~l~~~d~~~~--------~~~~l~~~~~~~~~~~~~~~  543 (642)
                        +..|.....  ..+..+.+|+.+++...+-.  ........|+.+++++.        +.+.+.......       .
T Consensus       283 --~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  351 (711)
T 4hvt_A          283 --LQKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE-------V  351 (711)
T ss_dssp             --EEECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE-------E
T ss_pred             --ceEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC-------e
Confidence              355543321  23456667754444432200  00012445999998763        344433323222       4


Q ss_pred             ccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCC
Q 039497          544 INHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       544 ~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  590 (642)
                      +..+.|..|  .|+++..+.+..              .|+++++.++
T Consensus       352 l~~~~~~~~--~l~~~~~~~~~~--------------~l~~~~~~~g  382 (711)
T 4hvt_A          352 FNFISTTKD--RVFLATYDNVVA--------------KVVTFTLENE  382 (711)
T ss_dssp             EEEEEECSS--CEEEEEEETTEE--------------EEEEECEETT
T ss_pred             EEEEEEECC--EEEEEEEECCEE--------------EEEEEECCCC
Confidence            456777765  577776666543              8999988665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.87  E-value=0.38  Score=46.99  Aligned_cols=142  Identities=13%  Similarity=0.174  Sum_probs=82.6

Q ss_pred             ceeEEEEECCCCCeeEEeecCCceeee----eecCCCE--EEEEEcCCCcccC--CCeEEEEEEEeecCCCCCCCCCccc
Q 039497          353 NAGIKIAKSDGSKRWTLIKDRTAFYNS----WSPTEKH--VIYTSTGPIFQSE--RATVQIARVSFQLDPSDDNNREEIP  424 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~~~~~~~~~----~spdg~~--l~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~  424 (642)
                      ...|+++|+++.....+.. +....+.    |.-.|+.  |++++.     ..  ...+.++.++.  +     .+    
T Consensus        49 ~~gL~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~-----R~~~~n~l~vf~iDp--~-----~~----  111 (355)
T 3amr_A           49 KSGLVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASN-----RSEGKNTIEIYAIDG--K-----NG----  111 (355)
T ss_dssp             TTEEEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEE-----CSTTCCEEEEEEECT--T-----TC----
T ss_pred             CCCEEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeC-----CCCCCCeEEEEEECC--C-----CC----
Confidence            4689999997766555532 3344433    3334554  667775     34  57889998864  2     22    


Q ss_pred             cceEEcccc-----CC-CCccCcEE--CCC-CCeEEEEeCCCCceeEEEEEC-CCCccc-cceeeCCCCCCcccceeEec
Q 039497          425 CDVKILTKE-----ET-GNNAFPSC--SPD-GKFLVFRSGRSGHKNLFVLDA-VNGEFN-GDIRQLTDGPWIDTMPSWSP  493 (642)
Q Consensus       425 ~~~~~l~~~-----~~-~~~~~~~~--SpD-g~~l~~~~~~~g~~~l~~~d~-~~g~~~-~~~~~l~~~~~~~~~~~~sp  493 (642)
                       ....+...     .. .....+.+  +|+ |+..+|.+.+++....|.+.. ..|+.. +.++.+.-. .....++..+
T Consensus       112 -~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd  189 (355)
T 3amr_A          112 -TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADD  189 (355)
T ss_dssp             -CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEET
T ss_pred             -ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcC
Confidence             34444221     11 33445666  774 666788888777544443322 233210 113444433 3456788998


Q ss_pred             CCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          494 KGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       494 dG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      ...+||+.....        .||+++.+
T Consensus       190 ~~g~Lyv~eEd~--------GIw~~da~  209 (355)
T 3amr_A          190 EYGRLYIAEEDE--------AIWKFSAE  209 (355)
T ss_dssp             TTTEEEEEETTT--------EEEEEECS
T ss_pred             CCCeEEEecccc--------eEEEEeCC
Confidence            888888887654        39999965

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.85  E-value=0.063  Score=53.12  Aligned_cols=148  Identities=12%  Similarity=0.049  Sum_probs=82.5

Q ss_pred             cEECC--CCC-eEEEEeCCC--CceeEEEEECCCCccccceeeCCCCC-CcccceeEecCCCEEEEEecCC-CC------
Q 039497          441 PSCSP--DGK-FLVFRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGP-WIDTMPSWSPKGDLIAFSSNRH-NP------  507 (642)
Q Consensus       441 ~~~Sp--Dg~-~l~~~~~~~--g~~~l~~~d~~~g~~~~~~~~l~~~~-~~~~~~~~spdG~~l~~~~~~~-~~------  507 (642)
                      +.+.+  ||+ +|++.....  ...+|+.++.+++.. ..+..+.... ...+.....++|+ ++++...- +.      
T Consensus       117 i~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~-~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~  194 (355)
T 3sre_A          117 ISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSL-LHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSW  194 (355)
T ss_dssp             EEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEE-EEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHH
T ss_pred             eEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEE-EEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccc
Confidence            44444  565 455554442  334688888775542 0111222211 2335668899997 55554310 00      


Q ss_pred             ---CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497          508 ---DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV  584 (642)
Q Consensus       508 ---~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  584 (642)
                         .......||+++..  +.+.+.. +..        ..+.++|||||++||++.....                .||+
T Consensus       195 e~~~~~~~g~vyr~d~~--~~~~~~~-~l~--------~pNGia~spDg~~lYvadt~~~----------------~I~~  247 (355)
T 3sre_A          195 EMHLGLAWSFVTYYSPN--DVRVVAE-GFD--------FANGINISPDGKYVYIAELLAH----------------KIHV  247 (355)
T ss_dssp             HHHTTCCCEEEEEECTT--CCEEEEE-EES--------SEEEEEECTTSSEEEEEEGGGT----------------EEEE
T ss_pred             hhhccCCccEEEEEECC--eEEEeec-CCc--------ccCcceECCCCCEEEEEeCCCC----------------eEEE
Confidence               00124579999873  4554433 211        3467999999999999876542                8999


Q ss_pred             EEcCC-Ccee---eccCCCCCCCCcEEec-CCceEEeec
Q 039497          585 VKLDG-SGLR---RLTWNGYENGTPAWHP-GNQLDLGKL  618 (642)
Q Consensus       585 ~~~~~-~~~~---~lt~~~~~~~~~~~s~-dg~~~~~~~  618 (642)
                      ++++. +.+.   .+ ...+....++..+ +|.++++..
T Consensus       248 ~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          248 YEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred             EEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence            98863 3322   22 2233345678888 588887653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.84  E-value=0.21  Score=48.39  Aligned_cols=236  Identities=7%  Similarity=-0.070  Sum_probs=112.9

Q ss_pred             CEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497          342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN  419 (642)
Q Consensus       342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  419 (642)
                      +.|++.........++++|....+...+..  ..........-+++ |++.....    ......++.++.  .     .
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~----~~~~~~~~~~d~--~-----~   79 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV-VYILGGSQ----LFPIKRMDCYNV--V-----K   79 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTE-EEEECCBS----SSBCCEEEEEET--T-----T
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCE-EEEEeCCC----CCCcceEEEEeC--C-----C
Confidence            445554433336789999999887666644  11222222233444 44333111    111223444444  1     1


Q ss_pred             CCccccceEEccccCCCCccCcEECCCCCeEEEEeCC---CCceeEEEEECCCCccccceeeCCCCCCcc-cceeEecCC
Q 039497          420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR---SGHKNLFVLDAVNGEFNGDIRQLTDGPWID-TMPSWSPKG  495 (642)
Q Consensus       420 ~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~---~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~-~~~~~spdG  495 (642)
                      +     ....+...+.....+....-+++.+++....   .....++++|+.+.+.    +.+...+... .+....-++
T Consensus        80 ~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~~~  150 (306)
T 3ii7_A           80 D-----SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW----HTKPSMLTQRCSHGMVEANG  150 (306)
T ss_dssp             T-----EEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETT
T ss_pred             C-----eEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCce----EeCCCCcCCcceeEEEEECC
Confidence            2     4455543331233333333455544443322   1134799999998875    5554433221 122223356


Q ss_pred             CEEEEEecCCCCC-CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCC
Q 039497          496 DLIAFSSNRHNPD-NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPN  574 (642)
Q Consensus       496 ~~l~~~~~~~~~~-~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~  574 (642)
                      +.+++........ ......++++|+.+.+.+.+......        ........-+++.+++.......         
T Consensus       151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~---------  213 (306)
T 3ii7_A          151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA--------RKNHGLVFVKDKIFAVGGQNGLG---------  213 (306)
T ss_dssp             EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCEETTE---------
T ss_pred             EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccch--------hhcceEEEECCEEEEEeCCCCCC---------
Confidence            5444443322100 00156799999999988877532211        12222233366544443322211         


Q ss_pred             CCCCCCcEEEEEcCCCceeeccCCCCCC-CCcEEecCCceEEeec
Q 039497          575 QFQPYGDLYVVKLDGSGLRRLTWNGYEN-GTPAWHPGNQLDLGKL  618 (642)
Q Consensus       575 ~~~~~~~l~~~~~~~~~~~~lt~~~~~~-~~~~~s~dg~~~~~~~  618 (642)
                         ....++.+|+....-+.+......- ...+..-++++++...
T Consensus       214 ---~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG  255 (306)
T 3ii7_A          214 ---GLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAG  255 (306)
T ss_dssp             ---EBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEEC
T ss_pred             ---CCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeC
Confidence               1238999999988777665432111 1122223666665443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.64  E-value=0.0031  Score=63.68  Aligned_cols=144  Identities=15%  Similarity=0.140  Sum_probs=58.0

Q ss_pred             CCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497          340 DGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN  419 (642)
Q Consensus       340 dg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  419 (642)
                      ++..|++...   ...|+.+|.++++.........+....+.++++.++..+       .++.+..++...        +
T Consensus         8 ~~~~v~~gs~---dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s-------~dg~l~a~d~~t--------G   69 (369)
T 2hz6_A            8 PETLLFVSTL---DGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDP-------NDGSLYTLGSKN--------N   69 (369)
T ss_dssp             CTTEEEEEET---TSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECT-------TTCCEEEC-------------
T ss_pred             eCCEEEEEcC---CCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeC-------CCCEEEEEECCC--------C
Confidence            4555665543   357888998877754333323333344455665444322       256666666644        2


Q ss_pred             CCccccceEEccccCC-CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEE
Q 039497          420 REEIPCDVKILTKEET-GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLI  498 (642)
Q Consensus       420 ~~~~~~~~~~l~~~~~-~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l  498 (642)
                      .     .......... .....+.++.++ .|++.+   ....|+.+|..+|+.   +..+....    ...++|++..|
T Consensus        70 ~-----~~w~~~~~~~~~~~~sp~~~~~~-~v~~g~---~dg~v~a~D~~tG~~---~w~~~~~~----~~~~~p~~~~v  133 (369)
T 2hz6_A           70 E-----GLTKLPFTIPELVQASPCRSSDG-ILYMGK---KQDIWYVIDLLTGEK---QQTLSSAF----ADSLSPSTSLL  133 (369)
T ss_dssp             C-----CSEECSCCHHHHHTTCSCC------CCCCE---EEEEEEEECCC-----------------------------E
T ss_pred             c-----eeeeeeccCccccccCceEecCC-EEEEEe---CCCEEEEEECCCCcE---EEEecCCC----cccccccCCEE
Confidence            2     2222221110 011233333343 444433   234799999999985   33333221    23556788888


Q ss_pred             EEEecCCCCCCCCceeEEEEeCCCCce
Q 039497          499 AFSSNRHNPDNVEAFSLYVIKPDGSGL  525 (642)
Q Consensus       499 ~~~~~~~~~~~~~~~~l~~~d~~~~~~  525 (642)
                      ++.+.++        .|+.+|.++++.
T Consensus       134 ~~~~~dg--------~v~a~d~~tG~~  152 (369)
T 2hz6_A          134 YLGRTEY--------TITMYDTKTREL  152 (369)
T ss_dssp             EEEEEEE--------EEECCCSSSSSC
T ss_pred             EEEecCC--------EEEEEECCCCCE
Confidence            8776543        399999987764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.57  E-value=0.16  Score=49.20  Aligned_cols=162  Identities=10%  Similarity=-0.047  Sum_probs=93.3

Q ss_pred             CCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC----C----cccceeE---ecCCCEEEEEecC
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP----W----IDTMPSW---SPKGDLIAFSSNR  504 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~----~----~~~~~~~---spdG~~l~~~~~~  504 (642)
                      .....+.|.+....+++.+...+  .|+.++..++..    ..+.-..    +    ....+.|   .|+|+.+++....
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g--~V~~~~~~~~~~----~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKG--RIEVYNPKTQSH----FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTT--EEEEECTTTCCE----EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             cCCcCccCcCCCCEEEEEeccCC--EEEEEcCCCCeE----EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            45667899988888888886544  899999986653    3321111    1    2356788   6887766544321


Q ss_pred             CC-----CCCCCceeEEEEeCC---CCceEEeeecC-CCCC---C-CcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          505 HN-----PDNVEAFSLYVIKPD---GSGLRRIHVAG-PEGS---G-DVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       505 ~~-----~~~~~~~~l~~~d~~---~~~~~~l~~~~-~~~~---~-~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      ..     ....+...|.++|++   +++........ ....   . ......+.+++..++|+. |++...+        
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-YVt~s~~--------  157 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-YVAFALG--------  157 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-EEEEEES--------
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-EEeCCCC--------
Confidence            00     001235679999999   55543322210 0000   0 000013568999999984 4443332        


Q ss_pred             CCCCCCCCCcEEEEEcCCCceeecc-CC-----CCCCCCcEEecCCceEEeecC
Q 039497          572 WPNQFQPYGDLYVVKLDGSGLRRLT-WN-----GYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~~~~lt-~~-----~~~~~~~~~s~dg~~~~~~~~  619 (642)
                             +..||+++.++.....+. ..     ......++++|||..|+...+
T Consensus       158 -------~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          158 -------MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             -------SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             -------CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence                   128999999987544322 11     122457899999987766655

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.49  E-value=1.5  Score=48.76  Aligned_cols=138  Identities=10%  Similarity=0.052  Sum_probs=80.4

Q ss_pred             CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC------CCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG------PWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~------~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      .+..+...++|+ |.+...    ..|++++..+++.    +.+...      ...+..+...++|+ |++......    
T Consensus       451 ~v~~i~~d~~g~-lwigt~----~Gl~~~~~~~~~~----~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~G----  516 (781)
T 3v9f_A          451 DVRVFYEDKNKK-IWIGTH----AGVFVIDLASKKV----IHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGG----  516 (781)
T ss_dssp             CEEEEEECTTSE-EEEEET----TEEEEEESSSSSC----CEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSC----
T ss_pred             eEEEEEECCCCC-EEEEEC----CceEEEeCCCCeE----EecccCcccccccceeEEEEEcCCCC-EEEEEcCCC----
Confidence            444555666664 555543    2599999987764    333211      12345556777886 566654332    


Q ss_pred             CceeEEEEeCCCCceEEeeecC-CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcE-EEEEcC
Q 039497          511 EAFSLYVIKPDGSGLRRIHVAG-PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL-YVVKLD  588 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~  588 (642)
                          |++++.++++.+.+.... ...      ..+..+...++|+ |++....                  .| +.++..
T Consensus       517 ----l~~~~~~~~~~~~~~~~~~l~~------~~i~~i~~d~~g~-lWi~T~~------------------Glv~~~d~~  567 (781)
T 3v9f_A          517 ----VGIYTPDMQLVRKFNQYEGFCS------NTINQIYRSSKGQ-MWLATGE------------------GLVCFPSAR  567 (781)
T ss_dssp             ----EEEECTTCCEEEEECTTTTCSC------SCEEEEEECTTSC-EEEEETT------------------EEEEESCTT
T ss_pred             ----EEEEeCCCCeEEEccCCCCCCC------CeeEEEEECCCCC-EEEEECC------------------CceEEECCC
Confidence                999999887776654311 111      1345666777887 4444432                  45 777777


Q ss_pred             CCceeeccCCC----CCCCCcEEecCCceEEee
Q 039497          589 GSGLRRLTWNG----YENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       589 ~~~~~~lt~~~----~~~~~~~~s~dg~~~~~~  617 (642)
                      ++..+.++...    ..+.++...++|+++++.
T Consensus       568 ~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          568 NFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST  600 (781)
T ss_dssp             TCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred             CCcEEEccccCCCCCceEEEEEECCCCCEEEEc
Confidence            76666555322    123456666777777664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.46  E-value=1.2  Score=47.47  Aligned_cols=83  Identities=11%  Similarity=0.095  Sum_probs=45.5

Q ss_pred             ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497          459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD  538 (642)
Q Consensus       459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  538 (642)
                      ...|+.+|+.+|+.   +-..... .....-..+..|..|++.+.++        .|+.+|.++++..--.......   
T Consensus       452 ~G~l~A~D~~tG~~---~W~~~~~-~~~~~g~~~tagg~vf~gt~dg--------~l~A~D~~tG~~lW~~~l~~g~---  516 (599)
T 1w6s_A          452 LGQIKAYNAITGDY---KWEKMER-FAVWGGTMATAGDLVFYGTLDG--------YLKARDSDTGDLLWKFKIPSGA---  516 (599)
T ss_dssp             CEEEEEECTTTCCE---EEEEEES-SCCCSBCEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC---
T ss_pred             cCeEEEEECCCCCE---EeEecCC-CCccCcceEecCCEEEEECCCC--------eEEEEECCCCCEEEEeeCCCCc---
Confidence            35789999999885   2222211 1111122333566666654443        3999999988764322222211   


Q ss_pred             cccccccceEEcCCCCEEEEEE
Q 039497          539 VDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       539 ~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                          ....+.+..||+..+...
T Consensus       517 ----~~~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          517 ----IGYPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             ----CSCCEEEEETTEEEEEEE
T ss_pred             ----EeccEEEEeCCEEEEEEE
Confidence                224467778997544443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.44  E-value=0.28  Score=53.39  Aligned_cols=119  Identities=12%  Similarity=0.025  Sum_probs=67.4

Q ss_pred             ccEEcC-CCCEEEEEecCC--------CceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCcccC
Q 039497          334 FPSFSP-DGGLIVFNHDFE--------LNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIFQSE  399 (642)
Q Consensus       334 ~~~~sp-dg~~l~~~~~~~--------~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~  399 (642)
                      ..++.+ +|+.+++.....        ....++++|..+++.+.+..     .......++.++|+.+++...      .
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~------~  263 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN------D  263 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS------S
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCC------C
Confidence            446677 776556644311        22478999999887665543     112234567788886666542      1


Q ss_pred             CCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCc-cCcEECCCCCeEEEEeCCCC---ceeEEEEECCCCcc
Q 039497          400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNN-AFPSCSPDGKFLVFRSGRSG---HKNLFVLDAVNGEF  472 (642)
Q Consensus       400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~SpDg~~l~~~~~~~g---~~~l~~~d~~~g~~  472 (642)
                      ...+++|+...  +            ....+......+. ...+..+||+.+++....++   ...++++|+.+++.
T Consensus       264 ~~~v~~yd~~t--~------------~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          264 AKKTSLYDSSS--D------------SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             TTCEEEEEGGG--T------------EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             CCceEEecCcC--C------------ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            33555555433  2            4455433221222 22456679987776652222   24788999987764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.27  E-value=1.6  Score=46.69  Aligned_cols=82  Identities=7%  Similarity=-0.043  Sum_probs=44.3

Q ss_pred             eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497          513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL  592 (642)
Q Consensus       513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  592 (642)
                      ..|+.+|+.+++..=-.......         ..-.+...|..|++.+.+                 ..|+.+|..++++
T Consensus       453 G~l~A~D~~tG~~~W~~~~~~~~---------~~g~~~tagg~vf~gt~d-----------------g~l~A~D~~tG~~  506 (599)
T 1w6s_A          453 GQIKAYNAITGDYKWEKMERFAV---------WGGTMATAGDLVFYGTLD-----------------GYLKARDSDTGDL  506 (599)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCC---------CSBCEEETTTEEEEECTT-----------------SEEEEEETTTCCE
T ss_pred             CeEEEEECCCCCEEeEecCCCCc---------cCcceEecCCEEEEECCC-----------------CeEEEEECCCCCE
Confidence            46888899887754222212111         112234456666654433                 2899999887764


Q ss_pred             e-eccCCCCCCC-CcEEecCCceEEeecCC
Q 039497          593 R-RLTWNGYENG-TPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       593 ~-~lt~~~~~~~-~~~~s~dg~~~~~~~~~  620 (642)
                      . +.....+... -..|..||+.++.....
T Consensus       507 lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          507 LWKFKIPSGAIGYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence            3 2322222223 34677899766554443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.26  E-value=0.63  Score=44.71  Aligned_cols=223  Identities=7%  Similarity=-0.047  Sum_probs=106.1

Q ss_pred             ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc---e
Q 039497          353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD---V  427 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~  427 (642)
                      ...++.+|..+.+...+..  ..........-+++.+++....    .......++.++.  .     ..     .   .
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~----~~~~~~~~~~~d~--~-----~~-----~~~~W   93 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD----GRSRLSSVECLDY--T-----AD-----EDGVW   93 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC----SSCBCCCEEEEET--T-----CC-----TTCCC
T ss_pred             eeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCC----CCccCceEEEEEC--C-----CC-----CCCee
Confidence            3578999998887666543  1122222333355433333321    1111123444444  1     11     3   4


Q ss_pred             EEccccCCCCccCcEECCCCCeEEEEeCCCC--ceeEEEEECCCCccccceeeCCCCCCc-ccceeEecCCCEEEEEecC
Q 039497          428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSG--HKNLFVLDAVNGEFNGDIRQLTDGPWI-DTMPSWSPKGDLIAFSSNR  504 (642)
Q Consensus       428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~~~~~l~~~~~~-~~~~~~spdG~~l~~~~~~  504 (642)
                      +.+...+.....+....-+++.+++......  ...++++|+.+.+.    +.+...+.. ..+....-+++.+++....
T Consensus        94 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  169 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQW----SMLGDMQTAREGAGLVVASGVIYCLGGYD  169 (301)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE----EEEEECSSCCBSCEEEEETTEEEEECCBC
T ss_pred             EECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeE----EECCCCCCCcccceEEEECCEEEEECCCC
Confidence            4444333122233333335544444322111  34799999998875    444332221 1122223356544444332


Q ss_pred             CCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497          505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV  584 (642)
Q Consensus       505 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  584 (642)
                      ..   .....++++|+.+.+.+.+......        .........+++ |++.....+..           ....++.
T Consensus       170 ~~---~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~~~~~-i~v~GG~~~~~-----------~~~~v~~  226 (301)
T 2vpj_A          170 GL---NILNSVEKYDPHTGHWTNVTPMATK--------RSGAGVALLNDH-IYVVGGFDGTA-----------HLSSVEA  226 (301)
T ss_dssp             SS---CBCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTE-EEEECCBCSSS-----------BCCCEEE
T ss_pred             CC---cccceEEEEeCCCCcEEeCCCCCcc--------cccceEEEECCE-EEEEeCCCCCc-----------ccceEEE
Confidence            21   1346699999999888877532211        112222333555 54443322110           1348999


Q ss_pred             EEcCCCceeeccCCCCC-CCCcEEecCCceEEeec
Q 039497          585 VKLDGSGLRRLTWNGYE-NGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       585 ~~~~~~~~~~lt~~~~~-~~~~~~s~dg~~~~~~~  618 (642)
                      +|+....-+.+...... ....+..-++++++...
T Consensus       227 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG  261 (301)
T 2vpj_A          227 YNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAG  261 (301)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred             EeCCCCcEEECCCCCCcccceeEEEECCEEEEEcC
Confidence            99998876666542211 11223344677666543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.26  E-value=1.6  Score=46.58  Aligned_cols=83  Identities=11%  Similarity=0.039  Sum_probs=45.8

Q ss_pred             ceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc
Q 039497          512 AFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG  591 (642)
Q Consensus       512 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  591 (642)
                      ...|+.+|+.+++..=-......         .........|..|++.+.+                 ..|+.+|..+++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~---------~~~g~~~tagglvf~g~~d-----------------g~l~A~D~~tG~  518 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLP---------LWAGVLATAGNLVFTGTGD-----------------GYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC---------CCSCCEEETTTEEEEECTT-----------------SEEEEEETTTCC
T ss_pred             cceEEEEECCCCCEEEEecCCCC---------CcccceEeCCCEEEEECCC-----------------CcEEEEECCCCC
Confidence            35699999988876422221211         1112223345556554433                 289999988776


Q ss_pred             e-eeccCCCCCCC-CcEEecCCceEEeecCC
Q 039497          592 L-RRLTWNGYENG-TPAWHPGNQLDLGKLRL  620 (642)
Q Consensus       592 ~-~~lt~~~~~~~-~~~~s~dg~~~~~~~~~  620 (642)
                      + -+......... -+.|+.||+.+++....
T Consensus       519 ~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          519 ELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             EEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence            3 33333322222 35688999877665544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.23  E-value=0.29  Score=47.41  Aligned_cols=168  Identities=8%  Similarity=0.071  Sum_probs=97.1

Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcccc-------CCCCccCcEE-
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKE-------ETGNNAFPSC-  443 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~-  443 (642)
                      ......+.|.+....+++.+..      .+.+..|  +.  +     ++     ....+...       .......+.| 
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~------~g~V~~~--~~--~-----~~-----~~~~~~~~~~s~~g~~~~~~sGl~~~   71 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLY------KGRIEVY--NP--K-----TQ-----SHFNVVIDGASSNGDGEQQMSGLSLL   71 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETT------TTEEEEE--CT--T-----TC-----CEEEECCTTTCCSSCCSEEEEEEEES
T ss_pred             ccCCcCccCcCCCCEEEEEecc------CCEEEEE--cC--C-----CC-----eEEEEecCCccccCCCcceeeEEEEe
Confidence            3456789999888888888732      3444434  33  1     12     22222111       0012356788 


Q ss_pred             --CCCCCeEEEEeC----------CCCceeEEEEECC---CCccccceee--CCC-----------CCCcccceeEecCC
Q 039497          444 --SPDGKFLVFRSG----------RSGHKNLFVLDAV---NGEFNGDIRQ--LTD-----------GPWIDTMPSWSPKG  495 (642)
Q Consensus       444 --SpDg~~l~~~~~----------~~g~~~l~~~d~~---~g~~~~~~~~--l~~-----------~~~~~~~~~~spdG  495 (642)
                        -|+|+.++....          ..+...|.++|+.   +|+.   +..  |..           .......++..++|
T Consensus        72 ~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~---~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G  148 (334)
T 2p9w_A           72 THDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP---VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG  148 (334)
T ss_dssp             SSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC---SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS
T ss_pred             ccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE---EEEecCccccccccccccccccCCceeEECCCC
Confidence              588766654331          1235679999998   7774   221  211           11234567899999


Q ss_pred             CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCC
Q 039497          496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ  575 (642)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~  575 (642)
                      +..+..+..       ...|++++.++.....+.......   ..+....-+++.|||+.|+.... .+           
T Consensus       149 naYVt~s~~-------~~~I~rV~pdG~~~~~~~~~~~~~---~~~~G~nGIv~~pdg~~Liv~~~-~g-----------  206 (334)
T 2p9w_A          149 NSYVAFALG-------MPAIARVSADGKTVSTFAWESGNG---GQRPGYSGITFDPHSNKLIAFGG-PR-----------  206 (334)
T ss_dssp             CEEEEEEES-------SCEEEEECTTSCCEEEEEECCCCS---SSCCSCSEEEEETTTTEEEEESS-SS-----------
T ss_pred             CEEEeCCCC-------CCeEEEEeCCCCEEeeeeecCCCc---ccccCcceEEEeCCCCEEEEEcC-CC-----------
Confidence            854433332       024999999987655443211110   01123567899999999888776 33           


Q ss_pred             CCCCCcEEEEEcCC
Q 039497          576 FQPYGDLYVVKLDG  589 (642)
Q Consensus       576 ~~~~~~l~~~~~~~  589 (642)
                           +|+.+|+..
T Consensus       207 -----~L~~fD~~~  215 (334)
T 2p9w_A          207 -----ALTAFDVSK  215 (334)
T ss_dssp             -----SEEEEECSS
T ss_pred             -----eEEEEcCCC
Confidence                 899999874

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.17  E-value=1.9  Score=46.82  Aligned_cols=79  Identities=13%  Similarity=0.026  Sum_probs=46.1

Q ss_pred             eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV  539 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  539 (642)
                      ..|+.+|+.+|+.   +-..... .......++..|..|++...++        .|+.+|.++++..--.......    
T Consensus       438 g~l~A~D~~tG~~---~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg--------~l~a~d~~tG~~l~~~~~~~~~----  501 (668)
T 1kv9_A          438 GALLAWDPVKQKA---AWKVPYP-THWNGGTLSTAGNLVFQGTAAG--------QMHAYSADKGEALWQFEAQSGI----  501 (668)
T ss_dssp             EEEEEEETTTTEE---EEEEEES-SSCCCCEEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC----
T ss_pred             ceEEEEeCCCCcE---EEEccCC-CCCcCceeEeCCCEEEEECCcc--------cchhhhhhcChhheEecCCCCc----
Confidence            5799999999985   2333222 1222335566777777764443        4999999988764333222111    


Q ss_pred             ccccccceEEcCCCCEEE
Q 039497          540 DRERINHVCFSADGEWLL  557 (642)
Q Consensus       540 ~~~~~~~~~~S~Dg~~l~  557 (642)
                         ....+.+..||+..+
T Consensus       502 ---~~~p~~~~~~G~~yv  516 (668)
T 1kv9_A          502 ---VAAPMTFELAGRQYV  516 (668)
T ss_dssp             ---CSCCEEEEETTEEEE
T ss_pred             ---ccCceEEEECCEEEE
Confidence               123456678887433

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.15  E-value=1  Score=43.33  Aligned_cols=201  Identities=8%  Similarity=-0.008  Sum_probs=99.4

Q ss_pred             ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      ...++++|..+.+...+..  ..........-+++.+++....    .......++.++.  .     ..     ..+.+
T Consensus        76 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~----~~~~~~~~~~~d~--~-----~~-----~W~~~  139 (302)
T 2xn4_A           76 VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFD----GSTGLSSVEAYNI--K-----SN-----EWFHV  139 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEC----SSCEEEEEEEEET--T-----TT-----EEEEE
T ss_pred             ccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCC----CCccCceEEEEeC--C-----CC-----eEeec
Confidence            3579999999888766654  1111222222355544444432    1112234555554  1     12     45555


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCC----ceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecCC
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSG----HKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g----~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~~  505 (642)
                      ...+.....+....-+++.+++......    ...++++|+.+.+.    ..+...+..... ....-+++.+++.....
T Consensus       140 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  215 (302)
T 2xn4_A          140 APMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW----TYIAEMSTRRSGAGVGVLNNLLYAVGGHDG  215 (302)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECCBSS
T ss_pred             CCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcE----EECCCCccccccccEEEECCEEEEECCCCC
Confidence            4333122222233335544444321111    34799999998875    555433322111 22233555444443332


Q ss_pred             CCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEE
Q 039497          506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV  585 (642)
Q Consensus       506 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  585 (642)
                      .   .....++++|+.+.+.+.+......        .........+++.+++....+..            ....++.+
T Consensus       216 ~---~~~~~~~~yd~~~~~W~~~~~~~~~--------r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~y  272 (302)
T 2xn4_A          216 P---LVRKSVEVYDPTTNAWRQVADMNMC--------RRNAGVCAVNGLLYVVGGDDGSC------------NLASVEYY  272 (302)
T ss_dssp             S---SBCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCBCSSS------------BCCCEEEE
T ss_pred             C---cccceEEEEeCCCCCEeeCCCCCCc--------cccCeEEEECCEEEEECCcCCCc------------ccccEEEE
Confidence            1   1245699999999888877542211        11222333466544443322211            12479999


Q ss_pred             EcCCCceeecc
Q 039497          586 KLDGSGLRRLT  596 (642)
Q Consensus       586 ~~~~~~~~~lt  596 (642)
                      |+....-+.+.
T Consensus       273 d~~~~~W~~~~  283 (302)
T 2xn4_A          273 NPTTDKWTVVS  283 (302)
T ss_dssp             ETTTTEEEECS
T ss_pred             cCCCCeEEECC
Confidence            99888766664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.12  E-value=0.96  Score=43.44  Aligned_cols=224  Identities=6%  Similarity=-0.090  Sum_probs=105.2

Q ss_pred             eeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ..++.+|+...+...+..  ..........-+++ |++.....   .......++.++.  .     ..     ..+.+.
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~---~~~~~~~~~~~d~--~-----~~-----~W~~~~   93 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGL-VFAVGGFN---GSLRVRTVDSYDP--V-----KD-----QWTSVA   93 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE-EEEESCBC---SSSBCCCEEEEET--T-----TT-----EEEEEC
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEECCE-EEEEeCcC---CCccccceEEECC--C-----CC-----ceeeCC
Confidence            568888888877655543  11111122222444 44432110   0111122444444  1     12     455554


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCC--ceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecCCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSG--HKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~~~~~  508 (642)
                      ..+.....+.+..-+++.+++......  ...++++|+.+.+.    ..+...+..... ....-+++.+++....... 
T Consensus        94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-  168 (302)
T 2xn4_A           94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEW----FHVAPMNTRRSSVGVGVVGGLLYAVGGYDVAS-  168 (302)
T ss_dssp             CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECCEETTT-
T ss_pred             CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeE----eecCCCCCcccCceEEEECCEEEEEeCCCCCC-
Confidence            433122233333346655555442221  24799999998875    555443322211 1222355544443322210 


Q ss_pred             CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497          509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD  588 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  588 (642)
                      ......++++|+.+.+.+.+......        ........-+++.+++....+..            ....++.+|+.
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~------------~~~~~~~yd~~  228 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTR--------RSGAGVGVLNNLLYAVGGHDGPL------------VRKSVEVYDPT  228 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCBSSSS------------BCCCEEEEETT
T ss_pred             CccccEEEEEeCCCCcEEECCCCccc--------cccccEEEECCEEEEECCCCCCc------------ccceEEEEeCC
Confidence            00145699999999888877532211        11222233355544443322211            13489999999


Q ss_pred             CCceeeccCCCCC-CCCcEEecCCceEEeec
Q 039497          589 GSGLRRLTWNGYE-NGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       589 ~~~~~~lt~~~~~-~~~~~~s~dg~~~~~~~  618 (642)
                      ...-+.+...... .......-++++++...
T Consensus       229 ~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG  259 (302)
T 2xn4_A          229 TNAWRQVADMNMCRRNAGVCAVNGLLYVVGG  259 (302)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred             CCCEeeCCCCCCccccCeEEEECCEEEEECC
Confidence            8876666543211 11223334666665543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.90  E-value=1  Score=43.53  Aligned_cols=224  Identities=6%  Similarity=-0.122  Sum_probs=104.2

Q ss_pred             ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCC---CcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497          353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGP---IFQSERATVQIARVSFQLDPSDDNNREEIPCDV  427 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  427 (642)
                      ...++++|..+.+...+..  ..........-+++ |++.....   ........  ++.++.  .     ..     ..
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~--~~~~d~--~-----~~-----~W  102 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGL-LYAVGGRNNSPDGNTDSSA--LDCYNP--M-----TN-----QW  102 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE-EEEECCEEEETTEEEECCC--EEEEET--T-----TT-----EE
T ss_pred             cceEEEEcCCCCeEeECCCCCcccccceEEEECCE-EEEECCCcCCCCCCeecce--EEEECC--C-----CC-----eE
Confidence            4678999998887666643  11111222223444 44432100   00000122  444444  1     12     45


Q ss_pred             EEccccCCCCccCcEECCCCCeEEEEeCCC--CceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecC
Q 039497          428 KILTKEETGNNAFPSCSPDGKFLVFRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNR  504 (642)
Q Consensus       428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~  504 (642)
                      +.+...+..........-+++.+++.....  ....++++|+.+.+.    ..+...+..... ....-+++.+++....
T Consensus       103 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  178 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTRRIGVGVAVLNRLLYAVGGFD  178 (308)
T ss_dssp             EECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             eECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCccccceEEEEECCEEEEEeCCC
Confidence            555433312222233333555444422111  124799999998875    665543322111 1222255444443333


Q ss_pred             CCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497          505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV  584 (642)
Q Consensus       505 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  584 (642)
                      ..   .....++++|+.+.+.+.+......        ........-+++.+++....+..            ....++.
T Consensus       179 ~~---~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~------------~~~~v~~  235 (308)
T 1zgk_A          179 GT---NRLNSAECYYPERNEWRMITAMNTI--------RSGAGVCVLHNCIYAAGGYDGQD------------QLNSVER  235 (308)
T ss_dssp             SS---CBCCCEEEEETTTTEEEECCCCSSC--------CBSCEEEEETTEEEEECCBCSSS------------BCCCEEE
T ss_pred             CC---CcCceEEEEeCCCCeEeeCCCCCCc--------cccceEEEECCEEEEEeCCCCCC------------ccceEEE
Confidence            21   1246799999998888776532211        11122222355544443322211            1348999


Q ss_pred             EEcCCCceeeccCCCCC-CCCcEEecCCceEEeec
Q 039497          585 VKLDGSGLRRLTWNGYE-NGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       585 ~~~~~~~~~~lt~~~~~-~~~~~~s~dg~~~~~~~  618 (642)
                      +|+....-+.+...... .......-++++++...
T Consensus       236 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG  270 (308)
T 1zgk_A          236 YDVETETWTFVAPMKHRRSALGITVHQGRIYVLGG  270 (308)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred             EeCCCCcEEECCCCCCCccceEEEEECCEEEEEcC
Confidence            99998877766543211 11122234666665543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.85  E-value=0.97  Score=43.38  Aligned_cols=201  Identities=7%  Similarity=-0.020  Sum_probs=97.0

Q ss_pred             ceeEEEEECCCCC---eeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497          353 NAGIKIAKSDGSK---RWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV  427 (642)
Q Consensus       353 ~~~l~~~d~~~~~---~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  427 (642)
                      ...++++|..+.+   .+.+..  ..........-+++ |++.....   .....-.++.++.  .     ..     ..
T Consensus        77 ~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~---~~~~~~~~~~~d~--~-----~~-----~W  140 (301)
T 2vpj_A           77 LSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDM-IYVSGGFD---GSRRHTSMERYDP--N-----ID-----QW  140 (301)
T ss_dssp             CCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTE-EEEECCBC---SSCBCCEEEEEET--T-----TT-----EE
T ss_pred             CceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCE-EEEEcccC---CCcccceEEEEcC--C-----CC-----eE
Confidence            3579999998887   666644  11122222223444 44433110   1111123444444  1     11     44


Q ss_pred             EEccccCCCCccCcEECCCCCeEEEEeCCC--CceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecC
Q 039497          428 KILTKEETGNNAFPSCSPDGKFLVFRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNR  504 (642)
Q Consensus       428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~  504 (642)
                      ..+...+.....+....-+++.+++.....  ....++.+|+.+.+.    +.+...+..... ....-+++ |++....
T Consensus       141 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~~~~-i~v~GG~  215 (301)
T 2vpj_A          141 SMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW----TNVTPMATKRSGAGVALLNDH-IYVVGGF  215 (301)
T ss_dssp             EEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTE-EEEECCB
T ss_pred             EECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE----EeCCCCCcccccceEEEECCE-EEEEeCC
Confidence            444332212233333334665444432211  134799999998885    555443322211 22223554 5444433


Q ss_pred             CCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEE
Q 039497          505 HNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYV  584 (642)
Q Consensus       505 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  584 (642)
                      ..  ......++++|+.+.+.+.+......        .........+++.+++....+..            ....++.
T Consensus       216 ~~--~~~~~~v~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~  273 (301)
T 2vpj_A          216 DG--TAHLSSVEAYNIRTDSWTTVTSMTTP--------RCYVGATVLRGRLYAIAGYDGNS------------LLSSIEC  273 (301)
T ss_dssp             CS--SSBCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCBCSSS------------BEEEEEE
T ss_pred             CC--CcccceEEEEeCCCCcEEECCCCCCc--------ccceeEEEECCEEEEEcCcCCCc------------ccccEEE
Confidence            21  11256799999999888877532211        12222333466644443322211            1237899


Q ss_pred             EEcCCCceeecc
Q 039497          585 VKLDGSGLRRLT  596 (642)
Q Consensus       585 ~~~~~~~~~~lt  596 (642)
                      +|+....-+.+.
T Consensus       274 yd~~~~~W~~~~  285 (301)
T 2vpj_A          274 YDPIIDSWEVVT  285 (301)
T ss_dssp             EETTTTEEEEEE
T ss_pred             EcCCCCeEEEcC
Confidence            998887655553

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.73  E-value=3.3  Score=45.90  Aligned_cols=199  Identities=9%  Similarity=0.005  Sum_probs=110.1

Q ss_pred             eeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497          354 AGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI  429 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  429 (642)
                      ..|++++..+++.+.+..    ...+..+...++|+ |++..        ...+  +.++.  .     ++     ....
T Consensus       427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt--------~~Gl--~~~~~--~-----~~-----~~~~  483 (781)
T 3v9f_A          427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGT--------HAGV--FVIDL--A-----SK-----KVIH  483 (781)
T ss_dssp             EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEE--------TTEE--EEEES--S-----SS-----SCCE
T ss_pred             CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEE--------CCce--EEEeC--C-----CC-----eEEe
Confidence            578888877766554432    23345555555554 55554        2333  44433  1     11     2222


Q ss_pred             ccccC-----CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCC----CcccceeEecCCCEEEE
Q 039497          430 LTKEE-----TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGP----WIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       430 l~~~~-----~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~----~~~~~~~~spdG~~l~~  500 (642)
                      +....     ...+..+...++|+ |.+.+...   .|++++.++++.    +.+....    ..+..+..+++|+ |++
T Consensus       484 ~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~---Gl~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g~-lWi  554 (781)
T 3v9f_A          484 HYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGG---GVGIYTPDMQLV----RKFNQYEGFCSNTINQIYRSSKGQ-MWL  554 (781)
T ss_dssp             EECTTTSSCSCSCEEEEEECTTCC-EEEEESSS---CEEEECTTCCEE----EEECTTTTCSCSCEEEEEECTTSC-EEE
T ss_pred             cccCcccccccceeEEEEEcCCCC-EEEEEcCC---CEEEEeCCCCeE----EEccCCCCCCCCeeEEEEECCCCC-EEE
Confidence            21110     12345566677775 44444322   499999887763    5544321    2334556677786 566


Q ss_pred             EecCCCCCCCCceeE-EEEeCCCCceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCC
Q 039497          501 SSNRHNPDNVEAFSL-YVIKPDGSGLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQP  578 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l-~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~  578 (642)
                      ....+         | +++|.++++.+..... +...      ..+..+...++|+ |++....                
T Consensus       555 ~T~~G---------lv~~~d~~~~~~~~~~~~~gl~~------~~i~~i~~d~~g~-lW~~t~~----------------  602 (781)
T 3v9f_A          555 ATGEG---------LVCFPSARNFDYQVFQRKEGLPN------THIRAISEDKNGN-IWASTNT----------------  602 (781)
T ss_dssp             EETTE---------EEEESCTTTCCCEEECGGGTCSC------CCCCEEEECSSSC-EEEECSS----------------
T ss_pred             EECCC---------ceEEECCCCCcEEEccccCCCCC------ceEEEEEECCCCC-EEEEcCC----------------
Confidence            65533         7 9999988877766532 1111      1345677777886 5555432                


Q ss_pred             CCcEEEEEcCCCceeeccCCCCCC------CCcEEecCCceEEeec
Q 039497          579 YGDLYVVKLDGSGLRRLTWNGYEN------GTPAWHPGNQLDLGKL  618 (642)
Q Consensus       579 ~~~l~~~~~~~~~~~~lt~~~~~~------~~~~~s~dg~~~~~~~  618 (642)
                        .|..++..++..+.+....+..      .+...++||+++++..
T Consensus       603 --Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~  646 (781)
T 3v9f_A          603 --GISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSI  646 (781)
T ss_dssp             --CEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEET
T ss_pred             --ceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECC
Confidence              5888888877776665432221      2345567888877653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.68  E-value=1.3  Score=45.82  Aligned_cols=203  Identities=16%  Similarity=0.103  Sum_probs=107.6

Q ss_pred             CCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeee--cCCCEEEEEEcCCCccc---------CCCeEE
Q 039497          339 PDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWS--PTEKHVIYTSTGPIFQS---------ERATVQ  404 (642)
Q Consensus       339 pdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~s--pdg~~l~~~~~~~~~~~---------~~~~~~  404 (642)
                      -||++|+...  ..+.+|-+++++.-+..++..   ...++...+-  |+-.+++..+.-.....         ...+..
T Consensus       140 yDGrylfiNd--kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~  217 (638)
T 3sbq_A          140 YDGKYLFIND--KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYT  217 (638)
T ss_dssp             EEEEEEEEEE--TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEE
T ss_pred             eeeEEEEEec--CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhce
Confidence            3677666544  345788999999887777665   4455666664  77777776654311111         111222


Q ss_pred             EE-EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC------------Ccee----------
Q 039497          405 IA-RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS------------GHKN----------  461 (642)
Q Consensus       405 l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~------------g~~~----------  461 (642)
                      ++ .++.        ...++  ..+.+.  . +.......+++|+|.++++...            ..-.          
T Consensus       218 ~f~~iD~--------~tm~v--~~Qv~v--~-gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie  284 (638)
T 3sbq_A          218 MYNAIDA--------ETMEM--AFQVIV--D-GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVE  284 (638)
T ss_dssp             EEEEEET--------TTCSE--EEEEEE--S-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHH
T ss_pred             EEEEEcC--------CccEE--EEEEEc--C-CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHH
Confidence            22 2332        12111  122222  2 4556678899999988876432            1112          


Q ss_pred             ---------------EEEEECCC----CccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          462 ---------------LFVLDAVN----GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       462 ---------------l~~~d~~~----g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                                     +-++|...    +..   +......+.....+..+|||++++....-.       ..+.++|++.
T Consensus       285 ~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~---~~~~iP~pksPHGv~vsPDGkyi~v~GKLs-------ptvtV~d~~k  354 (638)
T 3sbq_A          285 AAVKAGDFITLGDSKTPVLDGRKKDGKDSK---FTRYVPVPKNPHGCNTSSDGKYFIAAGKLS-------PTCSMIAIDK  354 (638)
T ss_dssp             HHHHTTCCBCCTTCCCCEEECSCBTTBCCS---SEEEEEESSSCCCEEECTTSCEEEEECTTS-------SBEEEEEGGG
T ss_pred             HHHhcCCeEEECCCCeeEEccccccccCCc---eEEEEeCCCCCcceeeCCCCCEEEEcCCCC-------CeEEEEEeeh
Confidence                           33334332    110   111111122345668999999998887644       3478888752


Q ss_pred             ------Cce----EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC
Q 039497          523 ------SGL----RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG  589 (642)
Q Consensus       523 ------~~~----~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  589 (642)
                            +++    ..+...-..+      ..+.+.+|.++|  .+|++.--.               .+|..|+++.
T Consensus       355 ~~~~~~~k~~~~~~~~~ae~e~G------lGPlHt~Fd~~G--~aYTtlfid---------------SqvvkWni~~  408 (638)
T 3sbq_A          355 LPDLFAGKLADPRDVIVGEPELG------LGPLHTTFDGRG--NAYTTLFID---------------SQVVKWNMEE  408 (638)
T ss_dssp             HHHHHTTCCSCGGGGEEECCBCC------SCEEEEEECSSS--EEEEEETTT---------------TEEEEEEHHH
T ss_pred             hhhhhhccccCcccceEeeccCC------CcccEEEECCCC--ceEeeeeec---------------ceEEEEeccH
Confidence                  111    0011111111      145688999999  455654322               2788888754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.68  E-value=0.82  Score=44.04  Aligned_cols=202  Identities=6%  Similarity=-0.078  Sum_probs=97.1

Q ss_pred             ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      ...++++|..+.+...+..  ..........-+++.+++..... .......+.+++...         .     ..+.+
T Consensus        69 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~~---------~-----~W~~~  133 (306)
T 3ii7_A           69 IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEV-GNSALYLFECYDTRT---------E-----SWHTK  133 (306)
T ss_dssp             CCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBT-TBSCCCCEEEEETTT---------T-----EEEEE
T ss_pred             cceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCC-CCcEeeeEEEEeCCC---------C-----ceEeC
Confidence            4679999999887766654  11222222233454333332210 001112334443322         1     44555


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCC--C----ceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEec
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRS--G----HKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSN  503 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~--g----~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~  503 (642)
                      ...+.....+....-+++.+++.....  .    ...++++|+.+.+.    ..+...+..... ....-+++.+++...
T Consensus       134 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~i~v~GG~  209 (306)
T 3ii7_A          134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW----TELCPMIEARKNHGLVFVKDKIFAVGGQ  209 (306)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECCE
T ss_pred             CCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeE----EECCCccchhhcceEEEECCEEEEEeCC
Confidence            433312233333334554444432111  1    45799999998875    555443322111 222225554444332


Q ss_pred             CCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497          504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY  583 (642)
Q Consensus       504 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  583 (642)
                      ...   .....++++|+.+.+.+.+......        ........-+++.+++....+..            ....++
T Consensus       210 ~~~---~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~------------~~~~~~  266 (306)
T 3ii7_A          210 NGL---GGLDNVEYYDIKLNEWKMVSPMPWK--------GVTVKCAAVGSIVYVLAGFQGVG------------RLGHIL  266 (306)
T ss_dssp             ETT---EEBCCEEEEETTTTEEEECCCCSCC--------BSCCEEEEETTEEEEEECBCSSS------------BCCEEE
T ss_pred             CCC---CCCceEEEeeCCCCcEEECCCCCCC--------ccceeEEEECCEEEEEeCcCCCe------------eeeeEE
Confidence            221   1245699999999888877532211        11222222356544444332211            134899


Q ss_pred             EEEcCCCceeecc
Q 039497          584 VVKLDGSGLRRLT  596 (642)
Q Consensus       584 ~~~~~~~~~~~lt  596 (642)
                      .+|+...+-+.+.
T Consensus       267 ~yd~~~~~W~~~~  279 (306)
T 3ii7_A          267 EYNTETDKWVANS  279 (306)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEcCCCCeEEeCC
Confidence            9999887755543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.36  E-value=2.1  Score=41.27  Aligned_cols=213  Identities=10%  Similarity=-0.057  Sum_probs=100.1

Q ss_pred             eeEEEEECCCCCeeEEee-c-CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          354 AGIKIAKSDGSKRWTLIK-D-RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ..++++|..+.+...+.. . .........-++ +|++...............++.++.  .     ..     ..+.+.
T Consensus        67 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~d~--~-----~~-----~W~~~~  133 (315)
T 4asc_A           67 AYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALN-SIYVVGGREIKDGERCLDSVMCYDR--L-----SF-----KWGESD  133 (315)
T ss_dssp             EEEEEEETTTTEEEECCCBSSCEESCEEEEETT-EEEEECCEESSTTCCBCCCEEEEET--T-----TT-----EEEECC
T ss_pred             cceEEecCCCCeEEECCCCCcchhceeEEEECC-EEEEEeCCcCCCCCcccceEEEECC--C-----CC-----cEeECC
Confidence            348999998887666543 1 111111122244 4444332100000111223444444  1     12     455554


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCC---ceeEEEEECCCCccccceeeCCCCCCcc-cceeEecCCCEEEEEecCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSG---HKNLFVLDAVNGEFNGDIRQLTDGPWID-TMPSWSPKGDLIAFSSNRHNP  507 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g---~~~l~~~d~~~g~~~~~~~~l~~~~~~~-~~~~~spdG~~l~~~~~~~~~  507 (642)
                      ..+.....+.+..-+++.+++.....+   ...++++|+.+.+.    +.+...+..- .+....-+++.+++...... 
T Consensus       134 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-  208 (315)
T 4asc_A          134 PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW----KELAPMQTARSLFGATVHDGRIIVAAGVTDT-  208 (315)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETTEEEEEEEECSS-
T ss_pred             CCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE----EECCCCCCchhceEEEEECCEEEEEeccCCC-
Confidence            433223333344445654444332111   34899999998875    6655433221 12222336665555554332 


Q ss_pred             CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEc
Q 039497          508 DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKL  587 (642)
Q Consensus       508 ~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  587 (642)
                        .....++++|+.+.+.+.+......        ........-+++.+++........ .....  ......++|.+|+
T Consensus       209 --~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~l~v~GG~~~~~~-~~~~~--~~~~~~~v~~yd~  275 (315)
T 4asc_A          209 --GLTSSAEVYSITDNKWAPFEAFPQE--------RSSLSLVSLVGTLYAIGGFATLET-ESGEL--VPTELNDIWRYNE  275 (315)
T ss_dssp             --SEEEEEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEEEEEEEEEC-TTSCE--EEEEEEEEEEEET
T ss_pred             --CccceEEEEECCCCeEEECCCCCCc--------ccceeEEEECCEEEEECCccccCc-CCccc--cccccCcEEEecC
Confidence              1356799999999988887542211        122223334665445443321000 00000  0001237999999


Q ss_pred             CCCceeeccC
Q 039497          588 DGSGLRRLTW  597 (642)
Q Consensus       588 ~~~~~~~lt~  597 (642)
                      ...+-+.+..
T Consensus       276 ~~~~W~~~~~  285 (315)
T 4asc_A          276 EEKKWEGVLR  285 (315)
T ss_dssp             TTTEEEEEES
T ss_pred             CCChhhhhcc
Confidence            9887666643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.33  E-value=0.019  Score=57.78  Aligned_cols=178  Identities=12%  Similarity=0.106  Sum_probs=71.8

Q ss_pred             cceEEEEeecCCceeeeEEEecCCCCCCCCCcee-eecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcC-CCCcc
Q 039497            4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEH-RLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRP-GSSKT   81 (642)
Q Consensus         4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~-~g~~~   81 (642)
                      +++|++. .    ..+.|+.+++..     |+.. ++.. ......| +. ++|+.++ ....+|.  |+.++. .|+..
T Consensus         9 ~~~v~~g-s----~dg~v~a~d~~t-----G~~~W~~~~-~~~~s~p-~~-~~g~~~v-~~s~dg~--l~a~d~~tG~~~   72 (369)
T 2hz6_A            9 ETLLFVS-T----LDGSLHAVSKRT-----GSIKWTLKE-DPVLQVP-TH-VEEPAFL-PDPNDGS--LYTLGSKNNEGL   72 (369)
T ss_dssp             TTEEEEE-E----TTSEEEEEETTT-----CCEEEEEEC-CCSCCCC-------CCEE-ECTTTCC--EEEC-----CCS
T ss_pred             CCEEEEE-c----CCCEEEEEECCC-----CCEEEEecC-CCceecc-eE-cCCCEEE-EeCCCCE--EEEEECCCCcee
Confidence            4555554 2    357899998766     5553 4443 2233333 55 6776554 3333443  555543 33211


Q ss_pred             cccCCCCCCcccccccc-CCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecC
Q 039497           82 ELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYE  160 (642)
Q Consensus        82 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~  160 (642)
                      ..............|.+ .++.|++....          +.|+.+++.+|+..--.....   ...++|++..|++...+
T Consensus        73 w~~~~~~~~~~~~sp~~~~~~~v~~g~~d----------g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~d  139 (369)
T 2hz6_A           73 TKLPFTIPELVQASPCRSSDGILYMGKKQ----------DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTE  139 (369)
T ss_dssp             EECSCCHHHHHTTCSCC-----CCCCEEE----------EEEEEECCC-------------------------EEEEEEE
T ss_pred             eeeeccCccccccCceEecCCEEEEEeCC----------CEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecC
Confidence            11110000001123444 55555443322          268999988877643222211   23567888888876543


Q ss_pred             CCCCCCCCCCCeeeEEEEEecCCCceeEee-cCCCcceEeeC----CeEEEEEecCCCceEEEEEecCCCc
Q 039497          161 SRPWPGEFHELNTDIVVFQESDPNKRVIVC-ERGGWPTWSGD----STIYFHRQADDGWWSIFRVSFPENL  226 (642)
Q Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~wspd----g~~~~~~~~~~g~~~l~~~~~~~~~  226 (642)
                                  ..|+.++..+|+...-.. .....+...++    +.+++..  .+|  .|+.++..+|.
T Consensus       140 ------------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~--~dg--~v~a~d~~tG~  194 (369)
T 2hz6_A          140 ------------YTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSN--GDG--LVVTVDSESGD  194 (369)
T ss_dssp             ------------EEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEE--TSC--EEEEECTTTCC
T ss_pred             ------------CEEEEEECCCCCEEEeEecccccCccccCCccccceEEEEC--CCC--EEEEEECCCCc
Confidence                        368888888887532221 11122444443    4455443  345  78888887773

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.21  E-value=4  Score=43.46  Aligned_cols=83  Identities=13%  Similarity=0.090  Sum_probs=45.8

Q ss_pred             ceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC
Q 039497          459 HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD  538 (642)
Q Consensus       459 ~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  538 (642)
                      ...|+.+|+.+|+.   +-+..... ..........|..|++...++        .|+.+|.++++..--.......   
T Consensus       465 ~G~l~A~D~~tG~~---~W~~~~~~-~~~~g~~~tagglvf~g~~dg--------~l~A~D~~tG~~lW~~~~~~g~---  529 (582)
T 1flg_A          465 VGSLRAMDPVSGKV---VWEHKEHL-PLWAGVLATAGNLVFTGTGDG--------YFKAFDAKSGKELWKFQTGSGI---  529 (582)
T ss_dssp             SEEEEEECTTTCCE---EEEEEESS-CCCSCCEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC---
T ss_pred             cceEEEEECCCCCE---EEEecCCC-CCcccceEeCCCEEEEECCCC--------cEEEEECCCCCEEEEecCCCCc---
Confidence            45899999999985   22322211 112222333456666654443        4999999888764333222211   


Q ss_pred             cccccccceEEcCCCCEEEEEE
Q 039497          539 VDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       539 ~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                          ....+.|+.||+..+...
T Consensus       530 ----~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          530 ----VSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             ----CSCCEEEEETTEEEEEEE
T ss_pred             ----ccCceEEEECCEEEEEEE
Confidence                223467788997544433

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.13  E-value=1.2  Score=42.98  Aligned_cols=200  Identities=7%  Similarity=-0.106  Sum_probs=94.1

Q ss_pred             eeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          354 AGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      ..++++|..+.+...+..  ..........-+++.+++.....  ......+.+++...         .     ....+.
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~---------~-----~W~~~~  153 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG--CIHHNSVERYEPER---------D-----EWHLVA  153 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEET--TEECCCEEEEETTT---------T-----EEEECC
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCC--CcccccEEEECCCC---------C-----eEeECC
Confidence            568999998887666644  11111222222454333322110  00012333333322         1     445544


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCC--ceeEEEEECCCCccccceeeCCCCCCcccce-eEecCCCEEEEEecCCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSG--HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP-SWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~-~~spdG~~l~~~~~~~~~~  508 (642)
                      ..+.....+....-+++.+++......  ...++++|+.+.+.    ..+...+..-... ...-+++.+++......  
T Consensus       154 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--  227 (308)
T 1zgk_A          154 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW----RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ--  227 (308)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETTEEEEECCBCSS--
T ss_pred             CCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeE----eeCCCCCCccccceEEEECCEEEEEeCCCCC--
Confidence            332122222223335544444322111  34799999998875    5554433221111 22225554444433221  


Q ss_pred             CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497          509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD  588 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  588 (642)
                       .....++++|+.+.+.+.+......        ........-+++.+++....+..            ....++.+|+.
T Consensus       228 -~~~~~v~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~------------~~~~v~~yd~~  286 (308)
T 1zgk_A          228 -DQLNSVERYDVETETWTFVAPMKHR--------RSALGITVHQGRIYVLGGYDGHT------------FLDSVECYDPD  286 (308)
T ss_dssp             -SBCCCEEEEETTTTEEEECCCCSSC--------CBSCEEEEETTEEEEECCBCSSC------------BCCEEEEEETT
T ss_pred             -CccceEEEEeCCCCcEEECCCCCCC--------ccceEEEEECCEEEEEcCcCCCc------------ccceEEEEcCC
Confidence             1346799999999888776532211        11222222356544443322211            13489999998


Q ss_pred             CCceeecc
Q 039497          589 GSGLRRLT  596 (642)
Q Consensus       589 ~~~~~~lt  596 (642)
                      ..+-+.+.
T Consensus       287 ~~~W~~~~  294 (308)
T 1zgk_A          287 TDTWSEVT  294 (308)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEeecC
Confidence            87765553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.08  E-value=4.8  Score=43.69  Aligned_cols=81  Identities=9%  Similarity=-0.015  Sum_probs=47.2

Q ss_pred             eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497          513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL  592 (642)
Q Consensus       513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  592 (642)
                      ..|+.+|+.+++..=-.....         ......++..|..|++.+.+                 ..|+.+|..++++
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~---------~~~~~~~~t~gg~vf~g~~d-----------------g~l~a~d~~tG~~  491 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPT---------HWNGGTLSTAGNLVFQGTAA-----------------GQMHAYSADKGEA  491 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESS---------SCCCCEEEETTTEEEEECTT-----------------SEEEEEETTTCCE
T ss_pred             ceEEEEeCCCCcEEEEccCCC---------CCcCceeEeCCCEEEEECCc-----------------ccchhhhhhcChh
Confidence            679999999887642222121         11234556677777665433                 2899999887764


Q ss_pred             -eeccCCCCCC-CCcEEecCCceEEeecC
Q 039497          593 -RRLTWNGYEN-GTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       593 -~~lt~~~~~~-~~~~~s~dg~~~~~~~~  619 (642)
                       .++....... .-..+..||+.+++...
T Consensus       492 l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          492 LWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             heEecCCCCcccCceEEEECCEEEEEEEe
Confidence             3443333222 33456788976655433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.83  E-value=1.1  Score=46.22  Aligned_cols=157  Identities=13%  Similarity=0.164  Sum_probs=80.6

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-c---------CCceeeeeecC---CCEEEEEEcCCCc-ccC
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-D---------RTAFYNSWSPT---EKHVIYTSTGPIF-QSE  399 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~---------~~~~~~~~spd---g~~l~~~~~~~~~-~~~  399 (642)
                      .++|.|||+.+ ++..  ....|++++..++....+.. .         .....++|+||   +..||+....... ..+
T Consensus        31 ~~a~~pdG~l~-V~e~--~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           31 ALLWGPDNQIW-LTER--ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             EEEECTTSCEE-EEET--TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             EEEEcCCCcEE-EEEc--CCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            56889999843 3332  12468888876565544432 1         23447899997   7777776531000 000


Q ss_pred             C---CeEEEEEEEeecCCCCCCCCCccccceEEc----cccCCCCccCcEECCCCCeEEEEeCCCC--------------
Q 039497          400 R---ATVQIARVSFQLDPSDDNNREEIPCDVKIL----TKEETGNNAFPSCSPDGKFLVFRSGRSG--------------  458 (642)
Q Consensus       400 ~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~SpDg~~l~~~~~~~g--------------  458 (642)
                      .   ....|+++..  +.    +...+. ..+.|    ..........++|.|||+ |+++....+              
T Consensus       108 ~~~~~~~~v~r~~~--~~----~~~~~~-~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~~~~~~~~~~  179 (454)
T 1cru_A          108 KELPNQTIIRRYTY--NK----STDTLE-KPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLFLPNQAQ  179 (454)
T ss_dssp             CCSCEEEEEEEEEE--ET----TTTEEE-EEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTTSCCCTT
T ss_pred             cccccccEEEEEEE--CC----CCCCcC-CcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCccccccccccc
Confidence            1   1456666655  20    111110 11222    111112345689999996 555533211              


Q ss_pred             ----------------ceeEEEEECCCCcccc--------ceeeCCCCCCcccceeEecCCCEEEEEec
Q 039497          459 ----------------HKNLFVLDAVNGEFNG--------DIRQLTDGPWIDTMPSWSPKGDLIAFSSN  503 (642)
Q Consensus       459 ----------------~~~l~~~d~~~g~~~~--------~~~~l~~~~~~~~~~~~spdG~~l~~~~~  503 (642)
                                      ...|++++.++ +.+.        ..+....+..+...++|+|+|+ |++...
T Consensus       180 ~~p~~~~~~aq~~~~~~G~IlRi~~dG-~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~  246 (454)
T 1cru_A          180 HTPTQQELNGKDYHTYMGKVLRLNLDG-SIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQ  246 (454)
T ss_dssp             CCCCHHHHHTTCCTTCSSEEEEECTTS-CCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEE
T ss_pred             cccccccccccCCCCCCeeEEEEeCCC-CCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEec
Confidence                            34799998874 3100        0123333334556779999887 444443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.77  E-value=3.1  Score=40.06  Aligned_cols=233  Identities=12%  Similarity=-0.017  Sum_probs=116.0

Q ss_pred             CCCcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeec--CCceeeeeceecCCCCCeEEEEEcc---CC-----Ccc
Q 039497            1 MEPKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLT--DGTSINFNAQFVDGQDQTIAFISER---SG-----SPR   70 (642)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt--~~~~~~~~~~~S~pDG~~laf~~~~---~g-----~~~   70 (642)
                      |...+.|+..      -+.++|..+...     ++-....  ............ -+++.++|-...   ++     ..+
T Consensus         1 ~~~~~~l~~~------GG~~~~~yd~~~-----~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~   68 (315)
T 4asc_A            1 MFLQDLIFMI------SEEGAVAYDPAA-----NECYCASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAY   68 (315)
T ss_dssp             CCCEEEEEEE------ETTEEEEEETTT-----TEEEEEECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEE
T ss_pred             CccceEEEEE------cCCceEEECCCC-----CeEecCCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccc
Confidence            4555555555      235677776665     4433211  111233444556 678777776531   11     123


Q ss_pred             eEEEcCCCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCc-cCCceeCC
Q 039497           71 IYQTRPGSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVV-DYSPSVSY  149 (642)
Q Consensus        71 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~-~~~~~~SP  149 (642)
                      +|..++....=..+............+.-+++|+......... ......++|++++.+.+.+++..-+.. ..+.+..-
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  147 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKD-GERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH  147 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESST-TCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCC-CCcccceEEEECCCCCcEeECCCCCCcccceeEEEE
Confidence            6776554422112222111111112222355555544422100 011234799999999988888754332 22334455


Q ss_pred             CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEEEec-CCC-ceEEEEEecCC
Q 039497          150 SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFHRQA-DDG-WWSIFRVSFPE  224 (642)
Q Consensus       150 DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~~~~-~~g-~~~l~~~~~~~  224 (642)
                      +++.+++.....      ......+++++++.+.+..++.....   ...+..-++++++.... ..+ ...++.+|+.+
T Consensus       148 ~~~iyv~GG~~~------~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          148 MDLVYVIGGKGS------DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             TTEEEEECCBCT------TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             CCEEEEEeCCCC------CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCC
Confidence            666555554311      01234579999999888777654211   22344457788777622 122 23789999888


Q ss_pred             CcccccCCccceeeCCCCC-ccccceeecCCcEEEEE
Q 039497          225 NLEFLGFPIAPTRVTPPGV-HCFTPAAFHDGKRLAVA  260 (642)
Q Consensus       225 ~~~~~~~~~~~~~l~~~~~-~~~~~~~SpdG~~l~~~  260 (642)
                      .        .-+.+..... .....+..-+++.+++.
T Consensus       222 ~--------~W~~~~~~p~~r~~~~~~~~~~~l~v~G  250 (315)
T 4asc_A          222 N--------KWAPFEAFPQERSSLSLVSLVGTLYAIG  250 (315)
T ss_dssp             T--------EEEEECCCSSCCBSCEEEEETTEEEEEE
T ss_pred             C--------eEEECCCCCCcccceeEEEECCEEEEEC
Confidence            6        5555544321 22222334466544443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.40  E-value=4.1  Score=39.77  Aligned_cols=181  Identities=12%  Similarity=0.088  Sum_probs=90.9

Q ss_pred             eEEEEEecCCCceeEeecCCC----cceEeeCCe---EEEEEecC--CCceEEEEEecCCCcccccCCccceeeCC----
Q 039497          174 DIVVFQESDPNKRVIVCERGG----WPTWSGDST---IYFHRQAD--DGWWSIFRVSFPENLEFLGFPIAPTRVTP----  240 (642)
Q Consensus       174 ~l~~~~~~~g~~~~l~~~~~~----~~~wspdg~---~~~~~~~~--~g~~~l~~~~~~~~~~~~~~~~~~~~l~~----  240 (642)
                      .|+++++.+...+.+....-+    .+.+.-.|+   ++++.+..  .+...+|.++..++        ....+..    
T Consensus        51 gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~--------~l~~i~~~~~p  122 (355)
T 3amr_A           51 GLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG--------TLQSMTDPDHP  122 (355)
T ss_dssp             EEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC--------CEEECSCTTSC
T ss_pred             CEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC--------ceeeccccccC
Confidence            588999944444444322212    234544452   56666555  56678888887776        4444422    


Q ss_pred             --CC-Ccccccee--ec-CCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccce
Q 039497          241 --PG-VHCFTPAA--FH-DGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH  314 (642)
Q Consensus       241 --~~-~~~~~~~~--Sp-dG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~  314 (642)
                        .+ .....+++  +| .|+..+|+....+    .+..|++...           .+|+. -..           .. .
T Consensus       123 v~t~~~~pyGlcly~~~~~g~~yafV~~k~G----~~~q~~l~~~-----------~~g~~-~~~-----------lV-R  174 (355)
T 3amr_A          123 IATAINEVYGFTLYHSQKTGKYYAMVTGKEG----EFEQYELKAD-----------KNGYI-SGK-----------KV-R  174 (355)
T ss_dssp             EECCCSSCCCEEEEECTTTCCEEEEEECSSS----EEEEEEEEEC-----------TTSCE-EEE-----------EE-E
T ss_pred             cCCCCCCeeEEEEEecCCCCcEEEEEECCCC----eEEEEEEEeC-----------CCCcc-cce-----------EE-E
Confidence              11 34445566  66 4555566555443    6666666221           11110 000           00 0


Q ss_pred             EeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECC--CCCe-eEEee------cCCceeeee--ecC
Q 039497          315 LEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSD--GSKR-WTLIK------DRTAFYNSW--SPT  383 (642)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~--~~~~-~~l~~------~~~~~~~~~--spd  383 (642)
                      ...+..          ........+...+|++..+ +  ..||.++.+  ++.. +.+..      ...+..+++  .++
T Consensus       175 ~f~lgs----------q~EgcvvDd~~g~Lyv~eE-d--~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~  241 (355)
T 3amr_A          175 AFKMNS----------QTEGMAADDEYGRLYIAEE-D--EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD  241 (355)
T ss_dssp             EEECSS----------CEEEEEEETTTTEEEEEET-T--TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG
T ss_pred             EecCCC----------CcceEEEcCCCCeEEEecc-c--ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC
Confidence            001111          1123356666666666554 2  459999965  3222 22322      134566666  577


Q ss_pred             CC-EEEEEEcCCCcccCCCeEEEEEEE
Q 039497          384 EK-HVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       384 g~-~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      |+ +|+.++.      ++..+.+|+..
T Consensus       242 g~gyLivSsQ------G~~s~~Vydr~  262 (355)
T 3amr_A          242 GKGYLMASSQ------GNSSYAIYDRQ  262 (355)
T ss_dssp             GCEEEEEEEG------GGTEEEEEESS
T ss_pred             CCEEEEEEcC------CCCEEEEEECC
Confidence            77 5666663      35677777653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.31  E-value=2  Score=41.57  Aligned_cols=209  Identities=10%  Similarity=0.023  Sum_probs=98.3

Q ss_pred             eEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497          355 GIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK  432 (642)
Q Consensus       355 ~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (642)
                      .++++|..+.+...+..  ..........-+++.+++.....  ........++.++.  .     ..     ..+.+..
T Consensus        79 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~~yd~--~-----~~-----~W~~~~~  144 (318)
T 2woz_A           79 YFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDL--QTEASLDSVLCYDP--V-----AA-----KWSEVKN  144 (318)
T ss_dssp             EEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBT--TTCCEEEEEEEEET--T-----TT-----EEEEECC
T ss_pred             cEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccC--CCCcccceEEEEeC--C-----CC-----CEeECCC
Confidence            38999998887666543  11111222222454444443210  01112234555555  2     12     4555543


Q ss_pred             cCCCCccCcEECCCCCeEEEEeCCC---CceeEEEEECCCCccccceeeCCCCCCccc-ceeEecCCCEEEEEecCCCCC
Q 039497          433 EETGNNAFPSCSPDGKFLVFRSGRS---GHKNLFVLDAVNGEFNGDIRQLTDGPWIDT-MPSWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       433 ~~~~~~~~~~~SpDg~~l~~~~~~~---g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~-~~~~spdG~~l~~~~~~~~~~  508 (642)
                      .+.....+....-+++.+++.....   ....++++|+.+.+.    ..+...+..-. +....-+++.+++......  
T Consensus       145 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--  218 (318)
T 2woz_A          145 LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW----KDLAPMKTPRSMFGVAIHKGKIVIAGGVTED--  218 (318)
T ss_dssp             CSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEEEEEETT--
T ss_pred             CCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE----EECCCCCCCcccceEEEECCEEEEEcCcCCC--
Confidence            3312223333344565444432111   134799999998875    55543322111 1222335655555544321  


Q ss_pred             CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497          509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD  588 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  588 (642)
                       .....++++|+++.+.+.+......        .........+++.+++........ +....  ......++|.+|+.
T Consensus       219 -~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~~-~~~~~--~~~~~~~v~~yd~~  286 (318)
T 2woz_A          219 -GLSASVEAFDLKTNKWEVMTEFPQE--------RSSISLVSLAGSLYAIGGFAMIQL-ESKEF--APTEVNDIWKYEDD  286 (318)
T ss_dssp             -EEEEEEEEEETTTCCEEECCCCSSC--------CBSCEEEEETTEEEEECCBCCBC-----CC--BCCBCCCEEEEETT
T ss_pred             -CccceEEEEECCCCeEEECCCCCCc--------ccceEEEEECCEEEEECCeeccCC-CCcee--ccceeeeEEEEeCC
Confidence             1346799999999888877542211        122223334555444432211000 00000  00013489999998


Q ss_pred             CCceeec
Q 039497          589 GSGLRRL  595 (642)
Q Consensus       589 ~~~~~~l  595 (642)
                      ..+-+.+
T Consensus       287 ~~~W~~~  293 (318)
T 2woz_A          287 KKEWAGM  293 (318)
T ss_dssp             TTEEEEE
T ss_pred             CCEehhh
Confidence            8876666

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.09  E-value=0.92  Score=46.70  Aligned_cols=147  Identities=12%  Similarity=0.094  Sum_probs=72.2

Q ss_pred             CCccCcEECCCCC-eEEEEeCCCCceeEEEEECCCCccccceeeCCC----C-----CCcccceeEecC---CCEEEEEe
Q 039497          436 GNNAFPSCSPDGK-FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD----G-----PWIDTMPSWSPK---GDLIAFSS  502 (642)
Q Consensus       436 ~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~----~-----~~~~~~~~~spd---G~~l~~~~  502 (642)
                      .....++|.|||+ .|+++. +.|  .|++++.++......+..+..    .     ......++++|+   ..+||+..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~e-r~G--~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y   90 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILE-KEG--YVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY   90 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEE-TTT--EEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEe-CCc--eEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence            3456789999996 565554 334  788887653211001122221    1     223345788886   33455544


Q ss_pred             cCCCC-----CCCCceeEEEEeCCCC--------ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCC
Q 039497          503 NRHNP-----DNVEAFSLYVIKPDGS--------GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEP  569 (642)
Q Consensus       503 ~~~~~-----~~~~~~~l~~~d~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~  569 (642)
                      .....     .......|.++.+..+        ..+.|.......    .......+.|.|||+ ||++..+.+...++
T Consensus        91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~----~~H~g~~l~fgpDG~-LYv~~Gd~~~~~~~  165 (463)
T 2wg3_C           91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH----RKHLGGQLLFGPDGF-LYIILGDGMITLDD  165 (463)
T ss_dssp             EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS----SSSCEEEEEECTTSC-EEEEECCTTCCHHH
T ss_pred             eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC----CcccCCcEeECCCCc-EEEEeCCCCCCCCc
Confidence            32110     0012357888877532        123333211000    001346799999995 77666554321000


Q ss_pred             CC-CCCCCCCCCcEEEEEcCCC
Q 039497          570 VS-WPNQFQPYGDLYVVKLDGS  590 (642)
Q Consensus       570 ~~-~~~~~~~~~~l~~~~~~~~  590 (642)
                      -. ....-...+.|++++.++.
T Consensus       166 ~~~~q~~~~~~GkIlRi~~dg~  187 (463)
T 2wg3_C          166 MEEMDGLSDFTGSVLRLDVDTD  187 (463)
T ss_dssp             HHHCTTCCSCTTEEEEEBCCCC
T ss_pred             cccccCcCCCCeeEEEEECCCC
Confidence            00 0000113568999999884

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=93.30  E-value=4.9  Score=39.81  Aligned_cols=160  Identities=9%  Similarity=0.083  Sum_probs=89.5

Q ss_pred             CEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497          342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE  421 (642)
Q Consensus       342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  421 (642)
                      +..+|+.+ .+...|.++|+.+++.+++..      ..+.|| ....+.-.                           | 
T Consensus       170 ~~~aYItD-~~~~gLIVydl~~~~swRv~~------~~~~pd-~~~~~~i~---------------------------G-  213 (381)
T 3q6k_A          170 ETFVYITN-FLRGALFIYDHKKQDSWNVTH------PTFKAE-RPTKFDYG---------------------------G-  213 (381)
T ss_dssp             SEEEEEEE-TTTTEEEEEETTTTEEEEEEC------GGGSCC-SCEEEEET---------------------------T-
T ss_pred             ccEEEEEc-CCCCcEEEEECCCCcEEEEcc------CCCccc-cCcceEEC---------------------------C-
Confidence            56788776 456799999999999888763      234565 32222221                           1 


Q ss_pred             ccccceEEccccCCCCccCcEECCC----CCeEEEEeCCCCceeEEEEEC---CCCccccceeeCCCCC--CcccceeEe
Q 039497          422 EIPCDVKILTKEETGNNAFPSCSPD----GKFLVFRSGRSGHKNLFVLDA---VNGEFNGDIRQLTDGP--WIDTMPSWS  492 (642)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~~SpD----g~~l~~~~~~~g~~~l~~~d~---~~g~~~~~~~~l~~~~--~~~~~~~~s  492 (642)
                          ....+.    ..+..+++||+    +++|+|.....  ..+|.+..   ........++.+-...  ......+.+
T Consensus       214 ----~~~~~~----~Gi~gIaLsp~~~~~~~~LYf~plss--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D  283 (381)
T 3q6k_A          214 ----KEYEFK----AGIFGITLGDRDSEGNRPAYYLAGSA--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD  283 (381)
T ss_dssp             ----EEEEEC----CCEEEEEECCCCTTSCCEEEEEESSC--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred             ----EEeEec----cCceEEEecCCcCCCCeEEEEEECCC--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence                111111    23556889998    89999988632  37888873   2221101123332221  111123554


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCC-----CceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-----SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      +....|+|.....       ..|..|+.++     +....+.....-.       .+..+.+..||. |++.+++
T Consensus       284 ~~~G~ly~~~~~~-------~aI~~w~~~~~~~~~~n~~~l~~d~~l~-------~pd~~~i~~~g~-Lwv~sn~  343 (381)
T 3q6k_A          284 PKTKVIFFAEANT-------KQVSCWNTQKMPLRMKNTDVVYTSSRFV-------FGTDISVDSKGG-LWFMSNG  343 (381)
T ss_dssp             TTTCEEEEEESSS-------SEEEEEETTSCSBCGGGEEEEEECTTCC-------SEEEEEECTTSC-EEEEECS
T ss_pred             CCCCeEEEEeccC-------CeEEEEeCCCCccccCceEEEEECCCcc-------ccCeEEECCCCe-EEEEECc
Confidence            3333577776544       3599999876     3445555433111       345666767774 7777654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.11  E-value=3  Score=41.05  Aligned_cols=169  Identities=5%  Similarity=-0.060  Sum_probs=72.9

Q ss_pred             eeEEEEECCCCccccceeeCCCCCC--cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeC--CCCceEEeeecCCCC
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTDGPW--IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP--DGSGLRRIHVAGPEG  535 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~~~~--~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~--~~~~~~~l~~~~~~~  535 (642)
                      ..++++|+.+.+.    +.+...+.  ........-+++.+++......  ......++.+|+  .+...+.+...... 
T Consensus       168 ~~v~~yd~~~~~W----~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~~d~d~~~~~W~~~~~~~~~-  240 (357)
T 2uvk_A          168 KFLLSFDPSTQQW----SYAGESPWYGTAGAAVVNKGDKTWLINGEAKP--GLRTDAVFELDFTGNNLKWNKLAPVSSP-  240 (357)
T ss_dssp             CEEEEEETTTTEE----EEEEECSSCCCBSCEEEEETTEEEEECCEEET--TEECCCEEEEECC---CEEEECCCSSTT-
T ss_pred             ccEEEEeCCCCcE----EECCCCCCCCcccccEEEECCEEEEEeeecCC--CcccCceEEEEecCCCCcEEecCCCCCC-
Confidence            4899999998875    44433221  1112222234544444332111  012345888887  66666665432111 


Q ss_pred             CCCcccccccceEEcCCCCEEEEEEecCCcccC---CCCC--CCCCCCCCcEEEEEcCCCceeeccCCCC-CCCCcEEec
Q 039497          536 SGDVDRERINHVCFSADGEWLLFTANLGAVMAE---PVSW--PNQFQPYGDLYVVKLDGSGLRRLTWNGY-ENGTPAWHP  609 (642)
Q Consensus       536 ~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~~~~~~lt~~~~-~~~~~~~s~  609 (642)
                           +..........+++.+++.........+   .-.+  .........++.+|+....-+++..... .....+..-
T Consensus       241 -----~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  315 (357)
T 2uvk_A          241 -----DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW  315 (357)
T ss_dssp             -----TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE
T ss_pred             -----cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe
Confidence                 1122222344566544444321100000   0000  0000011368899998877555543221 111334455


Q ss_pred             CCceEEeec-CCCcc-cccceeeeecccceecc
Q 039497          610 GNQLDLGKL-RLEDD-IGDKLRGQFDEPLWISC  640 (642)
Q Consensus       610 dg~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~  640 (642)
                      ++++++... +..+. ..+.....++..+|+.+
T Consensus       316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            776665443 32222 24566677888887654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.77  E-value=16  Score=39.68  Aligned_cols=207  Identities=10%  Similarity=0.070  Sum_probs=99.8

Q ss_pred             ceeEEEEECCCCCeeEEe-e-------c-CCceeeeeec-CCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCc
Q 039497          353 NAGIKIAKSDGSKRWTLI-K-------D-RTAFYNSWSP-TEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE  422 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~-~-------~-~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  422 (642)
                      ...++++|..+++...+. .       . ......+..+ +++.+++....... ..-..  +|.++.  .     ..  
T Consensus       411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~-~~~~d--v~~yd~--~-----t~--  478 (695)
T 2zwa_A          411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPH-QGLSD--NWIFDM--K-----TR--  478 (695)
T ss_dssp             CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTT-CBCCC--CEEEET--T-----TT--
T ss_pred             cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCC-Ccccc--EEEEeC--C-----CC--
Confidence            357999999988877766 2       1 1122333333 55544443321100 01123  444444  1     11  


Q ss_pred             cccceEEccccCCCCccCcEEC-CCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC------CCcccceeEecCC
Q 039497          423 IPCDVKILTKEETGNNAFPSCS-PDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG------PWIDTMPSWSPKG  495 (642)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~------~~~~~~~~~spdG  495 (642)
                         ..+.+...+.....+.+.. .+|+.++|....... .++++|+.+.+.    ..+...      ........+..+.
T Consensus       479 ---~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~W----~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          479 ---EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEIF----KDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             ---EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTEE----EECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             ---cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCce----EEccCCCCCCCcccceeEEEEeCCC
Confidence               4555543332233333333 477666655433222 899999998885    555431      1111224455553


Q ss_pred             CEEEEEecCCCCCCCCceeEEEEeCCCCc------eEEeeecCCCCCCCccccccc-ceEEcCCCCEEEEEEecCCcccC
Q 039497          496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSG------LRRIHVAGPEGSGDVDRERIN-HVCFSADGEWLLFTANLGAVMAE  568 (642)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~------~~~l~~~~~~~~~~~~~~~~~-~~~~S~Dg~~l~~~~~~~~~~~~  568 (642)
                      ..|++.+............++++|+.+..      .+.+.......       ... .++...|++.+++.......   
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~-------R~~~~~~~~~~~~iyv~GG~~~~~---  620 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQ-------RYGSQIKYITPRKLLIVGGTSPSG---  620 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGC-------CBSCEEEEEETTEEEEECCBCSSC---
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCC-------cccceEEEeCCCEEEEECCccCCC---
Confidence            44555543321101134679999999888      56554411011       112 22222335544443322110   


Q ss_pred             CCCCCCCCCCCCcEEEEEcCCCceeec
Q 039497          569 PVSWPNQFQPYGDLYVVKLDGSGLRRL  595 (642)
Q Consensus       569 ~~~~~~~~~~~~~l~~~~~~~~~~~~l  595 (642)
                            .+.....++.+|+....-+.+
T Consensus       621 ------~~~~~~~v~~yd~~t~~W~~~  641 (695)
T 2zwa_A          621 ------LFDRTNSIISLDPLSETLTSI  641 (695)
T ss_dssp             ------CCCTTTSEEEEETTTTEEEEC
T ss_pred             ------CCCCCCeEEEEECCCCeEEEe
Confidence                  001234899999988765543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=90.79  E-value=15  Score=36.98  Aligned_cols=243  Identities=9%  Similarity=0.095  Sum_probs=127.4

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      ..+..| +.+.++...++..++..+|+..+.       .+.+-   ...+.+..+.|..+-|+.-.      ...+.+||
T Consensus        30 ~TmESD-kyicVrE~~~~~~~vvIiDl~~~~-------~~~rr---pi~AdsAIMnP~~~iiALra------g~~lQiFn   92 (494)
T 1bpo_A           30 LTMESD-KFICIREKVGEQAQVVIIDMNDPS-------NPIRR---PISADSAIMNPASKVIALKA------GKTLQIFN   92 (494)
T ss_dssp             EEEEET-TEEEEEECCTTCCEEEEEETTSTT-------SCEEE---ECCCSEEEECSSSSCEEEEE------TTEEEEEE
T ss_pred             eeeecC-ceEEEEecCCCCCeEEEEECCCCC-------cceec---ccccceeeeCCCCcEEEEec------CCeEEEEc
Confidence            355555 555666434455589999998763       22221   11233455677777666632      34788888


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG  355 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  355 (642)
                      +.+..              +|-...+...      .                     .+=.|-. -+.|+++..    ..
T Consensus        93 le~K~--------------klks~~~~e~------V---------------------vfWkWis-~~~l~lVT~----ta  126 (494)
T 1bpo_A           93 IEMKS--------------KMKAHTMTDD------V---------------------TFWKWIS-LNTVALVTD----NA  126 (494)
T ss_dssp             TTTTE--------------EEEEEECSSC------C---------------------CEEEEEE-TTEEEEECS----SE
T ss_pred             hHHhh--------------hhcceecCCC------c---------------------eEEEecC-CCeEEEEcC----Ce
Confidence            83321              1111100000      0                     1113322 245777654    67


Q ss_pred             EEEEECCCC-CeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497          356 IKIAKSDGS-KRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK  428 (642)
Q Consensus       356 l~~~d~~~~-~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  428 (642)
                      +|.|++++. .+..+..      ..-+-...-++|.++++.+.-...-..-.+.++||.++.  +            ..+
T Consensus       127 VyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~------------~sQ  192 (494)
T 1bpo_A          127 VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--K------------VSQ  192 (494)
T ss_dssp             EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT--C------------CEE
T ss_pred             eEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc--c------------ccc
Confidence            888888763 2333333      223556677899999987764211111246677777754  1            333


Q ss_pred             EccccCCCCccCcEECCCC-----CeEEEEeCCCCceeEEEEECCCC---cc--ccceeeCCCCCCc-c---cceeEecC
Q 039497          429 ILTKEETGNNAFPSCSPDG-----KFLVFRSGRSGHKNLFVLDAVNG---EF--NGDIRQLTDGPWI-D---TMPSWSPK  494 (642)
Q Consensus       429 ~l~~~~~~~~~~~~~SpDg-----~~l~~~~~~~g~~~l~~~d~~~g---~~--~~~~~~l~~~~~~-~---~~~~~spd  494 (642)
                      .+..+. ...  ..+-.+|     +-+.|+........|+++++...   ..  .+....+.-.+.. .   -....|+.
T Consensus       193 ~ieGha-a~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k  269 (494)
T 1bpo_A          193 PIEGHA-ASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK  269 (494)
T ss_dssp             EECCSE-EEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT
T ss_pred             hheeee-eee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc
Confidence            333322 211  2232333     34666665444468999998643   11  0112333222211 1   22367877


Q ss_pred             CCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497          495 GDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       495 G~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                      -..|+.....+-        |+++|+.++..-
T Consensus       270 ygviyviTK~G~--------i~lyDleTgt~i  293 (494)
T 1bpo_A          270 HDVVFLITKYGY--------IHLYDLETGTCI  293 (494)
T ss_dssp             TTEEEEEETTSE--------EEEEETTTCCEE
T ss_pred             CCEEEEEecCce--------EEEEecccceee
Confidence            777777776654        999999988653

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=89.47  E-value=8.9  Score=40.48  Aligned_cols=70  Identities=14%  Similarity=0.205  Sum_probs=47.3

Q ss_pred             ceeEecCCCEEEEEecCCCC----CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          488 MPSWSPKGDLIAFSSNRHNP----DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~----~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      .+.|+|+|+.++........    .....+.++.++...++++++.......       .+.-+.|+||+++|++...-.
T Consensus       480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~ga-------E~TG~~fspDg~tlfvniQHP  552 (592)
T 3zwu_A          480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC-------EVTGISFSPDQKTLFVGIQHP  552 (592)
T ss_dssp             EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTC-------EEEEEEECTTSSEEEEEEEST
T ss_pred             ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCc-------cCcCeeECCCCCEEEEEEECC
Confidence            45899999844443322110    0124567899999999998887643333       678899999999998876544


Q ss_pred             C
Q 039497          564 A  564 (642)
Q Consensus       564 ~  564 (642)
                      +
T Consensus       553 G  553 (592)
T 3zwu_A          553 G  553 (592)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.58  E-value=17  Score=34.65  Aligned_cols=226  Identities=8%  Similarity=-0.014  Sum_probs=107.5

Q ss_pred             eeEEEEECCCCCeeEEeec---CCceeeeeecCCCEEEEEEcCCC--cccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497          354 AGIKIAKSDGSKRWTLIKD---RTAFYNSWSPTEKHVIYTSTGPI--FQSERATVQIARVSFQLDPSDDNNREEIPCDVK  428 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~~---~~~~~~~~spdg~~l~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  428 (642)
                      ..++.+|..+.+.......   ....+.....+++.+++......  .........++.++.  .     .+     ...
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~--~-----~~-----~W~   91 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDN--V-----SS-----EWV   91 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEET--T-----TT-----EEE
T ss_pred             cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeC--C-----CC-----cEE
Confidence            3578889888775553221   12223333445554444431100  000001112555554  2     12     555


Q ss_pred             EccccCCCCccCcEECCCCCeEEEEeCC----CCceeEEEEECCCCccccceeeCCCCCCcc-cceeEecCCCEEEEEec
Q 039497          429 ILTKEETGNNAFPSCSPDGKFLVFRSGR----SGHKNLFVLDAVNGEFNGDIRQLTDGPWID-TMPSWSPKGDLIAFSSN  503 (642)
Q Consensus       429 ~l~~~~~~~~~~~~~SpDg~~l~~~~~~----~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~-~~~~~spdG~~l~~~~~  503 (642)
                      .+...+.....+....-+++.+++....    .....++++|+.+.+.    +.+...+... .+....-+++.+++...
T Consensus        92 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~  167 (318)
T 2woz_A           92 GLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW----SEVKNLPIKVYGHNVISHNGMIYCLGGK  167 (318)
T ss_dssp             ECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEE----EEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred             ECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCE----eECCCCCCcccccEEEEECCEEEEEcCC
Confidence            5544331222222333355544444321    1124799999998885    5554433221 12233345654444432


Q ss_pred             CCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497          504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY  583 (642)
Q Consensus       504 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  583 (642)
                      ...  ......++++|+.+.+.+.+......        ........-+++.+++.......            ....++
T Consensus       168 ~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~------------~~~~~~  225 (318)
T 2woz_A          168 TDD--KKCTNRVFIYNPKKGDWKDLAPMKTP--------RSMFGVAIHKGKIVIAGGVTEDG------------LSASVE  225 (318)
T ss_dssp             ESS--SCBCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEEEEEETTE------------EEEEEE
T ss_pred             CCC--CCccceEEEEcCCCCEEEECCCCCCC--------cccceEEEECCEEEEEcCcCCCC------------ccceEE
Confidence            211  11345699999999888877532211        11222233466555554432211            123799


Q ss_pred             EEEcCCCceeeccCCCCCC-CCcEEecCCceEEee
Q 039497          584 VVKLDGSGLRRLTWNGYEN-GTPAWHPGNQLDLGK  617 (642)
Q Consensus       584 ~~~~~~~~~~~lt~~~~~~-~~~~~s~dg~~~~~~  617 (642)
                      .+|+.+..-+.+......- ......-++++++..
T Consensus       226 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G  260 (318)
T 2woz_A          226 AFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIG  260 (318)
T ss_dssp             EEETTTCCEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred             EEECCCCeEEECCCCCCcccceEEEEECCEEEEEC
Confidence            9999988877765432211 122334466666543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=88.45  E-value=22  Score=35.63  Aligned_cols=112  Identities=18%  Similarity=0.177  Sum_probs=63.5

Q ss_pred             CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc-c--------c--eeeCCC----CCCcccceeEecC---CCEE
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN-G--------D--IRQLTD----GPWIDTMPSWSPK---GDLI  498 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~--------~--~~~l~~----~~~~~~~~~~spd---G~~l  498 (642)
                      .+..+..||+|++|+....    .+|.++.+-.+... .        +  ...+..    ....+..+.|+|-   |..|
T Consensus        67 ~i~qlvlSpsG~lLAl~g~----~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~L  142 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND----NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCI  142 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS----SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEE
T ss_pred             ceeEEEECCCCCEEEEecC----CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeE
Confidence            4567899999999998853    46777776533210 0        0  011111    1234667789884   4567


Q ss_pred             EEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCC--cccccccceEEcCCCCEEEEEE
Q 039497          499 AFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGD--VDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       499 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      +....++.        |.+||+.....++.......+...  ..-..+.+++|+.+|=+||...
T Consensus       143 VVLtsD~~--------Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          143 VVLKEDDT--------ITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             EEEETTSC--------EEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred             EEEecCCE--------EEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence            77776654        999999753322221111000000  0002456889999988888765

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=86.85  E-value=7.7  Score=40.47  Aligned_cols=70  Identities=13%  Similarity=0.192  Sum_probs=48.2

Q ss_pred             cceeEecCCCEEEEEecCCCC-----CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEe
Q 039497          487 TMPSWSPKGDLIAFSSNRHNP-----DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN  561 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~-----~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~  561 (642)
                      ..+.|+++|. |+|..+....     .......+|+++..+++++++.......       .+.-++||||+++|++...
T Consensus       479 DnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~a-------EpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          479 DGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC-------EVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             EEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTC-------EEEEEEECTTSSEEEEEEE
T ss_pred             CceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCc-------cccCCEECCCCCEEEEEEe
Confidence            4568999997 6775443210     0113458999999889988876422222       4678999999999998876


Q ss_pred             cCC
Q 039497          562 LGA  564 (642)
Q Consensus       562 ~~~  564 (642)
                      ..+
T Consensus       551 HPG  553 (592)
T 4a9v_A          551 HPG  553 (592)
T ss_dssp             STT
T ss_pred             CCC
Confidence            654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.83  E-value=34  Score=37.07  Aligned_cols=150  Identities=7%  Similarity=0.024  Sum_probs=77.0

Q ss_pred             CCCeEEEEeCCCC---ceeEEEEECCCCccccceeeCCCCCCccc-ceeEe-cCCCEEEEEecCCCCCCCCceeEEEEeC
Q 039497          446 DGKFLVFRSGRSG---HKNLFVLDAVNGEFNGDIRQLTDGPWIDT-MPSWS-PKGDLIAFSSNRHNPDNVEAFSLYVIKP  520 (642)
Q Consensus       446 Dg~~l~~~~~~~g---~~~l~~~d~~~g~~~~~~~~l~~~~~~~~-~~~~s-pdG~~l~~~~~~~~~~~~~~~~l~~~d~  520 (642)
                      +|+.+++......   ...+|++|+.+.+.    +.+...+..-. +.+.. .+|+.+++.+....    .  .++++|+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W----~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~----~--~v~~yd~  520 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREW----SMIKSLSHTRFRHSACSLPDGNVLILGGVTEG----P--AMLLYNV  520 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEE----EECCCCSBCCBSCEEEECTTSCEEEECCBCSS----C--SEEEEET
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcE----EECCCCCCCcccceEEEEcCCEEEEECCCCCC----C--CEEEEEC
Confidence            6654444332221   24799999998875    66654432211 12222 47776666544332    2  7999999


Q ss_pred             CCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc------eee
Q 039497          521 DGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG------LRR  594 (642)
Q Consensus       521 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~  594 (642)
                      .+...+.+...+.   .+..+.....+.+..+...||+........         -.....+|.||+....      -+.
T Consensus       521 ~t~~W~~~~~~g~---~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~---------~~~~~~v~~yd~~~~~w~~~~~W~~  588 (695)
T 2zwa_A          521 TEEIFKDVTPKDE---FFQNSLVSAGLEFDPVSKQGIILGGGFMDQ---------TTVSDKAIIFKYDAENATEPITVIK  588 (695)
T ss_dssp             TTTEEEECCCSSG---GGGSCCBSCEEEEETTTTEEEEECCBCTTS---------SCBCCEEEEEEECTTCSSCCEEEEE
T ss_pred             CCCceEEccCCCC---CCCcccceeEEEEeCCCCEEEEECCcCCCC---------CeeeCcEEEEEccCCccccceEEEE
Confidence            9988887754210   111122233355566634555544321100         0013489999998876      444


Q ss_pred             ccC---CCCCCCCcEEecCCceEEee
Q 039497          595 LTW---NGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       595 lt~---~~~~~~~~~~s~dg~~~~~~  617 (642)
                      +..   ............++++++..
T Consensus       589 ~~~~p~~~R~~~~~~~~~~~~iyv~G  614 (695)
T 2zwa_A          589 KLQHPLFQRYGSQIKYITPRKLLIVG  614 (695)
T ss_dssp             EEECGGGCCBSCEEEEEETTEEEEEC
T ss_pred             cCCCCCCCcccceEEEeCCCEEEEEC
Confidence            432   11122233444446666543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.63  E-value=6.9  Score=38.32  Aligned_cols=65  Identities=8%  Similarity=0.032  Sum_probs=36.5

Q ss_pred             eeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497          513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL  592 (642)
Q Consensus       513 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  592 (642)
                      ..++++|+++.+.+.+......        .....+...+++.+++........           ...+|+++++++++.
T Consensus       285 ~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~~-----------~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          285 YSTDIHLWHNGKWDKSGELSQG--------RAYGVSLPWNNSLLIIGGETAGGK-----------AVTDSVLITVKDNKV  345 (357)
T ss_dssp             ECCEEEECC---CEEEEECSSC--------CBSSEEEEETTEEEEEEEECGGGC-----------EEEEEEEEEC-CCSC
T ss_pred             eeEEEEecCCCceeeCCCCCCC--------cccceeEEeCCEEEEEeeeCCCCC-----------EeeeEEEEEEcCcEe
Confidence            5689999999888887643221        222344456777666665433210           123899999998876


Q ss_pred             eecc
Q 039497          593 RRLT  596 (642)
Q Consensus       593 ~~lt  596 (642)
                      ..+.
T Consensus       346 ~~~~  349 (357)
T 2uvk_A          346 TVQN  349 (357)
T ss_dssp             EEEC
T ss_pred             Eeee
Confidence            5544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=85.74  E-value=26  Score=33.70  Aligned_cols=161  Identities=12%  Similarity=0.086  Sum_probs=76.7

Q ss_pred             eEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc
Q 039497          355 GIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT  431 (642)
Q Consensus       355 ~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  431 (642)
                      .|++ ..++++......   ...+..+.++|+++.+++...        +.  ++....  .     ++.    ..+.+.
T Consensus       143 ~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------G~--~~~S~d--~-----gG~----tW~~~~  200 (327)
T 2xbg_A          143 AIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR--------GS--FYSTWE--P-----GQT----AWEPHN  200 (327)
T ss_dssp             CEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT--------SS--EEEEEC--T-----TCS----SCEEEE
T ss_pred             cEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC--------Cc--EEEEeC--C-----CCC----ceeECC
Confidence            4554 345554333322   345667888898876655432        22  333222  1     121    333333


Q ss_pred             ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC----CCcccceeEecCCCEEEEEecCCCC
Q 039497          432 KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG----PWIDTMPSWSPKGDLIAFSSNRHNP  507 (642)
Q Consensus       432 ~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~----~~~~~~~~~spdG~~l~~~~~~~~~  507 (642)
                      .........+.++++|+.++.. . .|  .+++...+.|+.   -..+...    ......+.+.++++.++. ...+. 
T Consensus       201 ~~~~~~~~~~~~~~~g~~~~~~-~-~G--~~~~s~~D~G~t---W~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~-  271 (327)
T 2xbg_A          201 RTTSRRLHNMGFTPDGRLWMIV-N-GG--KIAFSDPDNSEN---WGELLSPLRRNSVGFLDLAYRTPNEVWLA-GGAGA-  271 (327)
T ss_dssp             CCSSSCEEEEEECTTSCEEEEE-T-TT--EEEEEETTEEEE---ECCCBCTTSSCCSCEEEEEESSSSCEEEE-ESTTC-
T ss_pred             CCCCCccceeEECCCCCEEEEe-C-Cc--eEEEecCCCCCe---eEeccCCcccCCcceEEEEecCCCEEEEE-eCCCe-
Confidence            2222445567788998655433 2 23  466654443442   2333211    123455678888775444 33332 


Q ss_pred             CCCCceeEEEEeCCCC-ceEEeeec-CCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          508 DNVEAFSLYVIKPDGS-GLRRIHVA-GPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       508 ~~~~~~~l~~~d~~~~-~~~~l~~~-~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                             |++ ..+++ ..+.+... ....       .+..+.|.++++ +++...+
T Consensus       272 -------i~~-S~DgG~tW~~~~~~~~~~~-------~~~~v~~~~~~~-~~~~G~~  312 (327)
T 2xbg_A          272 -------LLC-SQDGGQTWQQDVDVKKVPS-------NFYKILFFSPDQ-GFILGQK  312 (327)
T ss_dssp             -------EEE-ESSTTSSCEECGGGTTSSS-------CCCEEEEEETTE-EEEECST
T ss_pred             -------EEE-eCCCCcccEEcCccCCCCC-------CeEEEEEECCCc-eEEEcCC
Confidence                   654 44444 44544421 1112       356677875554 4444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=85.02  E-value=67  Score=37.75  Aligned_cols=243  Identities=8%  Similarity=0.083  Sum_probs=121.3

Q ss_pred             eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497          197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL  276 (642)
Q Consensus       197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~  276 (642)
                      ++..| +.+.++...++..+|..+|+..+.       .   ++.....+-+..+.|..+-|+.-.      ...+.+|++
T Consensus        31 T~eSD-kyicvre~~~~~~~vvIidl~~~~-------~---~~rrpi~AdsAIMnP~~~iiALra------g~~lQiFnl   93 (1630)
T 1xi4_A           31 TMESD-KFICIREKVGEQAQVVIIDMNDPS-------N---PIRRPISADSAIMNPASKVIALKA------GKTLQIFNI   93 (1630)
T ss_pred             eeecC-ceEEEEecCCCCceEEEEECCCCC-------C---cccccccchhhccCCCcceEEEec------CCeEEEeeh
Confidence            44344 455555333444589999988763       2   222233344555677777666621      348888888


Q ss_pred             ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeE
Q 039497          277 TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGI  356 (642)
Q Consensus       277 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l  356 (642)
                      .+......                               ..+.   ..+..+       .|-.+ +.|+++..    ..|
T Consensus        94 ~~k~klks-------------------------------~~~~---e~VvfW-------kWis~-~~l~lVT~----~aV  127 (1630)
T 1xi4_A           94 EMKSKMKA-------------------------------HTMT---DDVTFW-------KWISL-NTVALVTD----NAV  127 (1630)
T ss_pred             HHhhhhcc-------------------------------cccC---CCceEE-------EecCC-CeeEEEcC----CeE
Confidence            43221100                               0000   001111       33222 34666553    577


Q ss_pred             EEEECCCCC-eeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEE
Q 039497          357 KIAKSDGSK-RWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI  429 (642)
Q Consensus       357 ~~~d~~~~~-~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  429 (642)
                      |.|++++.. ++.+..      +.-+....-+++.++++.+.-...-..-.+.+++|.++.  .            ..+.
T Consensus       128 yHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er--~------------~sQ~  193 (1630)
T 1xi4_A          128 YHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--K------------VSQP  193 (1630)
T ss_pred             EEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc--c------------cchh
Confidence            888876532 111111      233556677899999988765322223357888888866  1            2233


Q ss_pred             ccccCCCCccCc---EECCCCCeEEEEeCCCCceeEEEEECCCC---c--cccceeeCCCCCC-cc---cceeEecCCCE
Q 039497          430 LTKEETGNNAFP---SCSPDGKFLVFRSGRSGHKNLFVLDAVNG---E--FNGDIRQLTDGPW-ID---TMPSWSPKGDL  497 (642)
Q Consensus       430 l~~~~~~~~~~~---~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~--~~~~~~~l~~~~~-~~---~~~~~spdG~~  497 (642)
                      +..+. .....+   ...+..+-+.|+........|+++++...   .  ..+....+.-.+. ..   .....|+.-..
T Consensus       194 iegha-~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~  272 (1630)
T 1xi4_A          194 IEGHA-ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV  272 (1630)
T ss_pred             hhHhH-hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCE
Confidence            33222 111111   11223345566654333368999998543   1  1011122221111 11   12355666666


Q ss_pred             EEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497          498 IAFSSNRHNPDNVEAFSLYVIKPDGSGL  525 (642)
Q Consensus       498 l~~~~~~~~~~~~~~~~l~~~d~~~~~~  525 (642)
                      |+.....+-        |+++|+.++..
T Consensus       273 iy~itk~G~--------~~~~d~~t~~~  292 (1630)
T 1xi4_A          273 VFLITKYGY--------IHLYDLETGTC  292 (1630)
T ss_pred             EEEEecCce--------EEEEecccchh
Confidence            666665553        89999988754

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=83.99  E-value=35  Score=33.68  Aligned_cols=108  Identities=4%  Similarity=-0.075  Sum_probs=61.2

Q ss_pred             ccceeEecC----CCEEEEEecCCCCCCCCceeEEEEeC---CC----CceEEeeecCCCCCCCcccccccceEEcCCCC
Q 039497          486 DTMPSWSPK----GDLIAFSSNRHNPDNVEAFSLYVIKP---DG----SGLRRIHVAGPEGSGDVDRERINHVCFSADGE  554 (642)
Q Consensus       486 ~~~~~~spd----G~~l~~~~~~~~~~~~~~~~l~~~d~---~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~  554 (642)
                      +..++.||+    +++|||......       ++|.+..   ..    ...+.+-..+...       .....+..+...
T Consensus       222 i~gIaLsp~~~~~~~~LYf~plss~-------~ly~V~T~~L~~~~~~~~v~~~G~kg~~s-------~~~~~~~D~~~G  287 (381)
T 3q6k_A          222 IFGITLGDRDSEGNRPAYYLAGSAI-------KVYSVNTKELKQKGGKLNPELLGNRGKYN-------DAIALAYDPKTK  287 (381)
T ss_dssp             EEEEEECCCCTTSCCEEEEEESSCS-------EEEEEEHHHHSSTTCCCCCEEEEECCTTC-------CEEEEEECTTTC
T ss_pred             ceEEEecCCcCCCCeEEEEEECCCC-------cEEEEEHHHhhCcchhhceEEeeecCCCC-------CcceEEEeCCCC
Confidence            456788998    899999987653       4787762   22    2233333322111       112345543334


Q ss_pred             EEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC-----CceeeccCCCC--CCCCcEEecCCceEEeecCCCcc
Q 039497          555 WLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG-----SGLRRLTWNGY--ENGTPAWHPGNQLDLGKLRLEDD  623 (642)
Q Consensus       555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~lt~~~~--~~~~~~~s~dg~~~~~~~~~~~~  623 (642)
                      .|+|+.-..                ..|..|+.++     +....|.....  +..++.+.++|.+++.+-++...
T Consensus       288 ~ly~~~~~~----------------~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~l~~~  347 (381)
T 3q6k_A          288 VIFFAEANT----------------KQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNGFPPI  347 (381)
T ss_dssp             EEEEEESSS----------------SEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECSCCSS
T ss_pred             eEEEEeccC----------------CeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECcchHh
Confidence            577776443                2899999887     23455554442  22455666788777665556543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.77  E-value=4.9  Score=36.29  Aligned_cols=100  Identities=20%  Similarity=0.328  Sum_probs=55.7

Q ss_pred             CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc---cceeeCCCCCCc-ccceeEecCCCEEEEEecCCCCCCCCc
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN---GDIRQLTDGPWI-DTMPSWSPKGDLIAFSSNRHNPDNVEA  512 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---~~~~~l~~~~~~-~~~~~~spdG~~l~~~~~~~~~~~~~~  512 (642)
                      ....++|+|||...+. +  +|  .||..+..+++..   ...+.|-...+. -..+.|.|+|...+. ++ +       
T Consensus        42 ~~~~laf~P~G~LYaV-~--~G--~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~d-G-------  107 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-L--ND--KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SK-D-------  107 (236)
T ss_dssp             TCSEEEECTTSCEEEE-E--TT--EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ET-T-------
T ss_pred             cceeEEECCCccEEEE-e--CC--eEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CC-C-------
Confidence            4567999999974433 2  23  7999998653210   001334332221 245688999975444 33 3       


Q ss_pred             eeEEEEeCCCCc-------eEEeeecCCCCCCCcccccccceEEcCCCCEEEEE
Q 039497          513 FSLYVIKPDGSG-------LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFT  559 (642)
Q Consensus       513 ~~l~~~d~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~  559 (642)
                       .||+++.-+..       ...|-..+..        .+..+.|.|+|...++.
T Consensus       108 -~iyr~~pP~~~~~~Wl~~a~~vg~~gw~--------~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          108 -KLYKASPPQSDTDNWIARATEVGSGGWS--------GFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             -EEEEESCCCSTTCCHHHHSEEEECSSGG--------GEEEEEECTTSCEEEEE
T ss_pred             -EEEEeCCCcCCCCceeccccEeccCCCC--------ceEEEEECCCceEEEEe
Confidence             28988863211       1233322222        35778999999744433

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=81.07  E-value=46  Score=33.95  Aligned_cols=38  Identities=11%  Similarity=-0.039  Sum_probs=22.9

Q ss_pred             cccceeEecCCCEEEEEecCCCC----------CCCCceeEEEEeCCCC
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNP----------DNVEAFSLYVIKPDGS  523 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~----------~~~~~~~l~~~d~~~~  523 (642)
                      ....+.|.|||+ ||++..+...          .....-.|++++++++
T Consensus       140 ~g~~l~fgpDG~-LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~  187 (463)
T 2wg3_C          140 LGGQLLFGPDGF-LYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTD  187 (463)
T ss_dssp             CEEEEEECTTSC-EEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCC
T ss_pred             cCCcEeECCCCc-EEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCC
Confidence            345679999996 5555443321          0112345889998874

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=80.47  E-value=5.5  Score=35.97  Aligned_cols=96  Identities=17%  Similarity=0.200  Sum_probs=57.0

Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC-------CceEEeeecCCCCCCCcccccccceEEcCCCCEEE
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG-------SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLL  557 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~  557 (642)
                      ....++|+|||...+.  ..+        .||..+..+       +..++|-..+..        .+..+.|.++|.. |
T Consensus        42 ~~~~laf~P~G~LYaV--~~G--------~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~--------~F~a~~fD~~G~L-Y  102 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LND--------KIYKGTPPTHDNDNWMGRAKKIGNGGWN--------QFQFLFFDPNGYL-Y  102 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETT--------EEEEESCCCSTTCCHHHHCEEEECSCGG--------GCSEEEECTTSCE-E
T ss_pred             cceeEEECCCccEEEE--eCC--------eEEEECCCCCCcccccccccEecccccc--------cceEEEECCCCCE-E
Confidence            4457899999984444  333        299999865       333455433332        2567889999974 4


Q ss_pred             EEEecCCcccCCCCCCCCCCCCCcEEEEEcCC--Cc-----eeeccCCCC-CCCCcEEecCCceEEee
Q 039497          558 FTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG--SG-----LRRLTWNGY-ENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-----~~~lt~~~~-~~~~~~~s~dg~~~~~~  617 (642)
                      .. .++                 .||+++...  +.     -+.|-..++ ....+.|.|+|.+++..
T Consensus       103 av-~dG-----------------~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          103 AV-SKD-----------------KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             EE-ETT-----------------EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             Ee-CCC-----------------EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            44 333                 899997522  21     122222222 23567889999877443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	642
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	2e-08
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	3e-08
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	1e-05
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	6e-05
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	2e-04
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	7e-08
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	3e-06
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	5e-06
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	2e-04
d1xfda1	465	b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik	5e-05

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 30/257 (11%), Positives = 58/257 (22%), Gaps = 13/257 (5%)

Query: 104 FFISAHEQPDQI-FKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESR 162
             ++     D+I F     L+  DLK+    ++     V  +      G+ IA+      
Sbjct: 4   LLLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGS 63

Query: 163 PWPGEFHELNTDIVVFQESDPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSF 222
                            E+   KR+                  F    +    +     F
Sbjct: 64  SLNTADL-----YFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF 118

Query: 223 PENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNF 282
                            P  +   T   F DG+R+      +  +++             
Sbjct: 119 SSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIE 178

Query: 283 HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV-----KELRMLRLNGSF--P 335
            +   F                                       K+LR       +   
Sbjct: 179 VNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPR 238

Query: 336 SFSPDGGLIVFNHDFEL 352
             + DG  I+F+    +
Sbjct: 239 HLNTDGRRILFSKGGSI 255

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 27/172 (15%)

Query: 444 SPD--GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS 501
           +PD  G  ++F        +L+  D  +G      R++     +     + P G  IA  
Sbjct: 7   NPDIHGDRIIFVCCD----DLWEHDLKSGS----TRKIVSNLGVINNARFFPDGRKIAIR 58

Query: 502 SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTAN 561
             R +  N     LY    +   ++RI      G     R   +   F  DG  ++ T  
Sbjct: 59  VMRGSSLNT--ADLYFYNGENGEIKRITYFS--GKSTGRRMFTDVAGFDPDGNLIIST-- 112

Query: 562 LGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQL 613
                                 + +++  G+  +  N        +  G ++
Sbjct: 113 -----------DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRV 153

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 32/248 (12%), Positives = 65/248 (26%), Gaps = 27/248 (10%)

Query: 235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSE 294
             ++            F DG+++A+   R +        +    N        F   ++ 
Sbjct: 33  TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTG 92

Query: 295 FIGYHRFRGESTEGQS-----------TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGL 343
              +    G   +G             ++  L  V +       L L  +      DG  
Sbjct: 93  RRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRR 152

Query: 344 IVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATV 403
           ++  + FEL            K W  +            T           I+       
Sbjct: 153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDG 212

Query: 404 QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLF 463
                S  LD  D          ++  T     +      + DG+ ++F  G S    ++
Sbjct: 213 FGQIYSTDLDGKD----------LRKHTSF--TDYYPRHLNTDGRRILFSKGGS----IY 256

Query: 464 VLDAVNGE 471
           + +    +
Sbjct: 257 IFNPDTEK 264

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 29/273 (10%), Positives = 56/273 (20%), Gaps = 38/273 (13%)

Query: 333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTST 392
           +   F PDG  I                S  +                +           
Sbjct: 44  NNARFFPDGRKIAIRVMRG--------SSLNTADLYFYNGENGEIKRITYFSGKSTGRRM 95

Query: 393 GPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVF 452
                       +   +  + P           +  I         A      DG+ ++ 
Sbjct: 96  FTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIG 155

Query: 453 RSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEA 512
           R+               G+   ++   +         S      +I         D    
Sbjct: 156 RNTFELPHWKGYRGGTRGKIWIEVN--SGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGF 213

Query: 513 FSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW 572
             +Y    DG  LR+                      + DG  +LF+             
Sbjct: 214 GQIYSTDLDGKDLRKH----------TSFTDYYPRHLNTDGRRILFSKG----------- 252

Query: 573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTP 605
                  G +Y+   D   + ++     E+   
Sbjct: 253 -------GSIYIFNPDTEKIEKIEIGDLESPED 278

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 33/206 (16%), Positives = 59/206 (28%), Gaps = 36/206 (17%)

Query: 436 GNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDT-------M 488
           G        PDG+ +  R  R    N   L   N   NG+I+++T      T       +
Sbjct: 41  GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN-GENGEIKRITYFSGKSTGRRMFTDV 99

Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVC 548
             + P G+LI  +             LY ++ DG     +++         D  R+    
Sbjct: 100 AGFDPDGNLIIST--DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRN 157

Query: 549 FSADGEWLLFTANLGAVM-------------------------AEPVSWPNQFQPYGDLY 583
                 W  +       +                            + +      +G +Y
Sbjct: 158 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIY 217

Query: 584 VVKLDGSGLRRLTWNGYENGTPAWHP 609
              LDG  LR+ T +  +      + 
Sbjct: 218 STDLDGKDLRKHT-SFTDYYPRHLNT 242

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.2 bits (123), Expect = 7e-08
 Identities = 36/262 (13%), Positives = 78/262 (29%), Gaps = 16/262 (6%)

Query: 122 LYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQES 181
           L  +D        +        SP+ S  G  +A  ++ES                    
Sbjct: 21  LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQT-------LANG 73

Query: 182 DPNKRVIVCERGGWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP 241
              +        G P +S D +      +  G  +++ +                +VT  
Sbjct: 74  AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL--------ASGQIRQVTDG 125

Query: 242 GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRF 301
             +   P  F D + LA  + +  R   +    +                          
Sbjct: 126 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 185

Query: 302 RGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKS 361
              S+ G       + +A+   ++         PS +P+G +++++    + + + +  +
Sbjct: 186 VMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 245

Query: 362 DGSKRWTLIK-DRTAFYNSWSP 382
           DG  +  L   D    + +WSP
Sbjct: 246 DGRFKARLPATDGQVKFPAWSP 267

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 39/231 (16%), Positives = 67/231 (29%), Gaps = 40/231 (17%)

Query: 335 PSFSPDGGLIVFNHDFELNAGIKI---------------------AKSDGSKRWTLIKDR 373
           P++SPDG  + +       + + I                     A S    +      +
Sbjct: 44  PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSK 103

Query: 374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEI-----PCDVK 428
           T   N +                 +                SD   R ++          
Sbjct: 104 TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 163

Query: 429 ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM 488
                E   N     S DGKF+V  S   G +++   D           Q+    ++D  
Sbjct: 164 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD-----LATGGVQVLSSTFLDET 218

Query: 489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV 539
           PS +P G ++ +SS++          L ++  DG    R+    P   G V
Sbjct: 219 PSLAPNGTMVIYSSSQGM-----GSVLNLVSTDGRFKARL----PATDGQV 260

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 32/261 (12%), Positives = 74/261 (28%), Gaps = 21/261 (8%)

Query: 356 IKIAKSDGSKRWTLIKDRTAFYN-SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDP 414
           ++++  DG  ++ + +      + +WSP    + Y +      +            Q+  
Sbjct: 21  LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS 80

Query: 415 SDDNNREEIPCD-----VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN 469
              +N               L+K  + N      +      V     +  +  +  D+ N
Sbjct: 81  FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQN 140

Query: 470 GEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH 529
             F  D         ++       +       +   +  +   F + V    G       
Sbjct: 141 LAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 200

Query: 530 VAGPEGSGDVDRERIN-HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD 588
                G   +    ++     + +G  ++++++ G                  L +V  D
Sbjct: 201 DLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGM--------------GSVLNLVSTD 246

Query: 589 GSGLRRLTWNGYENGTPAWHP 609
           G    RL     +   PAW P
Sbjct: 247 GRFKARLPATDGQVKFPAWSP 267

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD 508
           ++V  +G      L V D  +G    +   +   P     P+WSP G  +A+ +      
Sbjct: 8   YVVQTNGGQFPYELRVSDY-DG---YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRS 63

Query: 509 NV 510
            +
Sbjct: 64  AL 65

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 5e-05
 Identities = 42/413 (10%), Positives = 100/413 (24%), Gaps = 44/413 (10%)

Query: 196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGK 255
             W  D+   +  +   G  ++   +   N   +              +  +P    D +
Sbjct: 22  AKWISDTEFIY--REQKG--TVRLWNVETNTSTVLIEGKKIESLRAIRYEISP----DRE 73

Query: 256 RLAVATRRKNRNFRH-----IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQS 310
               +   +   ++H       +  +          P VS     + Y  +  +  +   
Sbjct: 74  YALFSYNVE-PIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK--LQYAGWGPKGQQLIF 130

Query: 311 TIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIK-IAKSDGSKRWTL 369
              +     + V +  + R+  +        GL  + ++ E+         S    R   
Sbjct: 131 IFENNIYYCAHVGKQAI-RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY 189

Query: 370 IKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKI 429
                +                T   +   +A  +   +S  +   +    +        
Sbjct: 190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD 249

Query: 430 LTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP 489
               E         +     + + +       L + DA  G             W+    
Sbjct: 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWLHRQN 308

Query: 490 -----SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERI 544
                S   +      +  +         ++   +P+ S      +     SGD D  +I
Sbjct: 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI----TSGDWDVTKI 364

Query: 545 NHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG-DLYVVKLDGSGLRRLT 596
                   G  + F +              +  P    LY     G+  R+  
Sbjct: 365 LAY--DEKGNKIYFLST-------------EDLPRRRQLYSANTVGNFNRQCL 402

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	642
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.91
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.89
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.85
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.78
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.78
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.77
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.76
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.76
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.7
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.7
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.69
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.68
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.67
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.67
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.66
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.64
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.64
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.64
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.63
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.62
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.61
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.61
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.6
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.6
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.6
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.59
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.54
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.53
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.46
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.45
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.44
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.43
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.42
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.41
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.4
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.39
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.2
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.19
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.18
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.18
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.14
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.13
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.13
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	98.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	98.95
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.86
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	98.83
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.81
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.77
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.74
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.72
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.68
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.67
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.64
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.61
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.6
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.55
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.55
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.49
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	98.42
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.39
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.37
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	98.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.82
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.71
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	97.64
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.6
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.2
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.71
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.38
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.36
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.33
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.95
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.35
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.41
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.35
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.02
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.84
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.09
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	83.66
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.18
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	81.19

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4.4e-22  Score=192.59  Aligned_cols=262  Identities=15%  Similarity=0.183  Sum_probs=197.1

Q ss_pred             CEEEEEEeecCCCCCCcccceEeeccCCCcee-EEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-
Q 039497          294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKEL-RMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-  371 (642)
Q Consensus       294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-  371 (642)
                      ++|+|........  ....+|+.+.++..... .........|+|||||++|||+........+++++..++..++++. 
T Consensus         4 ~~iay~~~~~~~~--~~~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (269)
T d2hqsa1           4 TRIAYVVQTNGGQ--FPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF   81 (269)
T ss_dssp             CEEEEEEECSSSS--CCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC
T ss_pred             CeEEEEEEeCCCC--ceEEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee
Confidence            4566655444321  11246677776653332 2122222578999999999999888888899999999999888777 


Q ss_pred             cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEE
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~  451 (642)
                      ......+.|||||+.+++....      .+...++....  .     ..     ......... .....+.++++++.++
T Consensus        82 ~~~~~~~~~spdg~~i~~~~~~------~~~~~~~~~~~--~-----~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~  142 (269)
T d2hqsa1          82 PRHNGAPAFSPDGSKLAFALSK------TGSLNLYVMDL--A-----SG-----QIRQVTDGR-SNNTEPTWFPDSQNLA  142 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECT------TSSCEEEEEET--T-----TC-----CEEECCCCS-SCEEEEEECTTSSEEE
T ss_pred             ecccccceecCCCCeeeEeeec------CCccceeeccc--c-----cc-----cceeeeecc-ccccccccccccccce
Confidence            5667788999999999998853      34444555444  1     11     333434333 4556678999999999


Q ss_pred             EEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeec
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVA  531 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  531 (642)
                      +.+.+.+..+|++.++.++..    ..++........+.|||||+++++.+...     +...|++++..++..+.+...
T Consensus       143 ~~~~~~g~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~  213 (269)
T d2hqsa1         143 FTSDQAGRPQVYKVNINGGAP----QRITWEGSQNQDADVSSDGKFMVMVSSNG-----GQQHIAKQDLATGGVQVLSST  213 (269)
T ss_dssp             EEECTTSSCEEEEEETTSSCC----EECCCSSSEEEEEEECTTSSEEEEEEECS-----SCEEEEEEETTTCCEEECCCS
T ss_pred             ecccccCCceEeeeecccccc----eeeecccccccccccccccceeEEEeecC-----CceeeeEeecccccceEeecC
Confidence            999988889999999998874    77777777778899999999999998876     567899999988776554432


Q ss_pred             CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEec
Q 039497          532 GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHP  609 (642)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~  609 (642)
                      .          ....+.|||||++|+|.+..++..              .||+++++++.+++|+...+.+..|+|||
T Consensus       214 ~----------~~~~p~~SPDG~~i~f~s~~~~~~--------------~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         214 F----------LDETPSLAPNGTMVIYSSSQGMGS--------------VLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             S----------SCEEEEECTTSSEEEEEEEETTEE--------------EEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             c----------cccceEECCCCCEEEEEEcCCCCc--------------EEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            2          235789999999999999876543              89999999999999999887778899998

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.3e-22  Score=196.39  Aligned_cols=260  Identities=17%  Similarity=0.269  Sum_probs=184.4

Q ss_pred             ceEEEEeecCCce-eeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccc
Q 039497            5 GTIVFTTVGRPYY-GFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTEL   83 (642)
Q Consensus         5 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~   83 (642)
                      .+|||++.-+... ..+||+++..|     +.+++||.+...+.+|+|| |||++|||++.+.+...             
T Consensus         4 ~~iay~~~~~~~~~~~~l~i~d~dG-----~~~~~l~~~~~~~~sP~wS-PDGk~IAf~~~~~~~~~-------------   64 (269)
T d2hqsa1           4 TRIAYVVQTNGGQFPYELRVSDYDG-----YNQFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRSA-------------   64 (269)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTS-----CSCEEEEEESSCEEEEEEC-TTSSEEEEEECTTSSCE-------------
T ss_pred             CeEEEEEEeCCCCceEEEEEEcCCC-----CCcEEEecCCCceeeeEEC-CCCCEEEEEEeeccCcc-------------
Confidence            5899997643222 24799999999     9999999999999999999 99999999876554443             


Q ss_pred             cCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCC
Q 039497           84 LPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRP  163 (642)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~  163 (642)
                                                            +|.++..++..++++........+.|||||++|++.....  
T Consensus        65 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~--  104 (269)
T d2hqsa1          65 --------------------------------------LVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT--  104 (269)
T ss_dssp             --------------------------------------EEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT--
T ss_pred             --------------------------------------eeeeecccCceeEEeeeecccccceecCCCCeeeEeeecC--
Confidence                                                  4444556666677777776667789999999999987654  


Q ss_pred             CCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCC
Q 039497          164 WPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPP  241 (642)
Q Consensus       164 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~  241 (642)
                             +...++.+...............  ..+.|++++..++......|..+|+..+..++        ...+++..
T Consensus       105 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~--------~~~~~~~~  169 (269)
T d2hqsa1         105 -------GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--------APQRITWE  169 (269)
T ss_dssp             -------SSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--------CCEECCCS
T ss_pred             -------CccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc--------cceeeecc
Confidence                   34455555544444443333222  25688988854444435677889999999887        56777776


Q ss_pred             CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC
Q 039497          242 GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP  321 (642)
Q Consensus       242 ~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  321 (642)
                      ......+.|||||+++++...+.+  ...+++++.                                          ...
T Consensus       170 ~~~~~~~~~spdg~~~~~~~~~~~--~~~i~~~~~------------------------------------------~~~  205 (269)
T d2hqsa1         170 GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDL------------------------------------------ATG  205 (269)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSS--CEEEEEEET------------------------------------------TTC
T ss_pred             cccccccccccccceeEEEeecCC--ceeeeEeec------------------------------------------ccc
Confidence            666777889999999998765543  223333332                                          001


Q ss_pred             CceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeec
Q 039497          322 VKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSP  382 (642)
Q Consensus       322 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~sp  382 (642)
                      ..++.........|.|||||++|+|.+...+...|++++++++..++++. .+.+..++|||
T Consensus       206 ~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         206 GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             cceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            01111111223467999999999998877788899999999999888877 55677899998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=2.5e-23  Score=209.98  Aligned_cols=329  Identities=14%  Similarity=0.085  Sum_probs=208.8

Q ss_pred             ceeCC-CCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-CcceEeeCCeEEEEEecCCCceEEEEEec
Q 039497          145 PSVSY-SGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-GWPTWSGDSTIYFHRQADDGWWSIFRVSF  222 (642)
Q Consensus       145 ~~~SP-DG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~wspdg~~~~~~~~~~g~~~l~~~~~  222 (642)
                      +.||| ||++||+...+             +||+|++.++...++.+... ..++|||||+.+++....+| ..|+.++.
T Consensus         8 ~~fSP~dG~~~a~~~~g-------------~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g-~~v~v~d~   73 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSRG-------------QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREG-DFLGIYDY   73 (360)
T ss_dssp             EEEEECGGGCEEEEETT-------------EEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTE-EEEEEEET
T ss_pred             ccccCCCCCEEEEEECC-------------eEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCC-CEEEEEEC
Confidence            67999 99999998632             69999999998888754332 35799999976655423333 35888898


Q ss_pred             CCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEee
Q 039497          223 PENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFR  302 (642)
Q Consensus       223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~  302 (642)
                      .++        +.+++..+...+..++|||||++|++.....     .+++|++....              .....   
T Consensus        74 ~~~--------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~-----~~~~~~~~~~~--------------~~~~~---  123 (360)
T d1k32a3          74 RTG--------KAEKFEENLGNVFAMGVDRNGKFAVVANDRF-----EIMTVDLETGK--------------PTVIE---  123 (360)
T ss_dssp             TTC--------CEEECCCCCCSEEEEEECTTSSEEEEEETTS-----EEEEEETTTCC--------------EEEEE---
T ss_pred             CCC--------cEEEeeCCCceEEeeeecccccccceecccc-----ccccccccccc--------------eeeee---
Confidence            888        6778888777788899999999999865544     67777762111              00000   


Q ss_pred             cCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec-------CCCceeEEEEECCCCCeeEEee-cCC
Q 039497          303 GESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD-------FELNAGIKIAKSDGSKRWTLIK-DRT  374 (642)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-------~~~~~~l~~~d~~~~~~~~l~~-~~~  374 (642)
                                             .........++|+|||++|++...       ......++++++.+++...+.. ...
T Consensus       124 -----------------------~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~  180 (360)
T d1k32a3         124 -----------------------RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH  180 (360)
T ss_dssp             -----------------------ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSB
T ss_pred             -----------------------ecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccc
Confidence                                   000112235689999999988543       1334678899999887766655 455


Q ss_pred             ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEe
Q 039497          375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRS  454 (642)
Q Consensus       375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~  454 (642)
                      ...+.|+|||+.|++.+.       +....+|+...  .........    ....+.... .....+.|+|+++.++...
T Consensus       181 ~~~~~~spdg~~l~~~s~-------~~~~~~~d~~~--~~~~~~~~~----~~~~~~~~~-~~~~~~~~s~~~~~~~~~~  246 (360)
T d1k32a3         181 DYAPAFDADSKNLYYLSY-------RSLDPSPDRVV--LNFSFEVVS----KPFVIPLIP-GSPNPTKLVPRSMTSEAGE  246 (360)
T ss_dssp             EEEEEECTTSCEEEEEES-------CCCCCEECSSS--SCEECCSCB----EEEEEESST-TCCCGGGCCCGGGSCCCCC
T ss_pred             cccccccCCCCEEEEEeC-------CCceEcccccc--cceeecccc----ceEEEeccc-CccccceECCCcCcccccc
Confidence            677899999999999874       33444444321  000000010    222333333 3445678999998765433


Q ss_pred             CC--CCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497          455 GR--SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG  532 (642)
Q Consensus       455 ~~--~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  532 (642)
                      ..  .....++.++..+++.    ..+.........+.+.+++....+.....     ....|++||+++++...+..  
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~d~~~~~~~~~~~--  315 (360)
T d1k32a3         247 YDLNDMYKRSSPINVDPGDY----RMIIPLESSILIYSVPVHGEFAAYYQGAP-----EKGVLLKYDVKTRKVTEVKN--  315 (360)
T ss_dssp             CCCTTGGGGCEECSCCCBCE----EEEEECSSEEEEEECCCCCSHHHHHHCCC-----CCEEEEEEETTTCCEEEEEE--
T ss_pred             eeecccccceeecccCcCce----eEeeecCCCceEEEEEecCCCeeEEEecC-----CCCEEEEEECCCCeEEEecC--
Confidence            21  1123566666666553    44443333333334444443222222211     34569999999988766543  


Q ss_pred             CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce
Q 039497          533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL  592 (642)
Q Consensus       533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  592 (642)
                                .+..++|||||++|++.+.++                 .|++|+++.++.
T Consensus       316 ----------~v~~~~~SpDG~~l~~~~~Dg-----------------~i~v~d~~~~~~  348 (360)
T d1k32a3         316 ----------NLTDLRLSADRKTVMVRKDDG-----------------KIYTFPLEKPED  348 (360)
T ss_dssp             ----------EEEEEEECTTSCEEEEEETTS-----------------CEEEEESSCTTS
T ss_pred             ----------CcCEEEECCCCCEEEEEECCC-----------------eEEEEECCCCCc
Confidence                      357899999999999988765                 799999887653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-20  Score=195.00  Aligned_cols=380  Identities=12%  Similarity=0.125  Sum_probs=231.9

Q ss_pred             ceEEEEccCCceEecccCCCc----cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC---
Q 039497          121 ALYSTDLKASKFTRLTPYGVV----DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG---  193 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~----~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---  193 (642)
                      .|+++++.+++.+.|......    .....|||||++|+|..+..+.|...   ....+|++++.+++.++|.....   
T Consensus        38 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s---~~~~~~i~d~~~~~~~~l~~~~~~~~  114 (465)
T d1xfda1          38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS---YTGYYVLSKIPHGDPQSLDPPEVSNA  114 (465)
T ss_dssp             CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC---CCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred             cEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEee---ccccEEEEEccCCceeeccCccCCcc
Confidence            688889998887765543222    23356999999999998877777654   34589999999999998876432   


Q ss_pred             --CcceEeeCC-eEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceee
Q 039497          194 --GWPTWSGDS-TIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRH  270 (642)
Q Consensus       194 --~~~~wspdg-~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~  270 (642)
                        ..+.||||| +++|++   ++  +||.++..++        ...+++..+....          + +....       
T Consensus       115 ~l~~~~wSPDG~~iafv~---~~--nl~~~~~~~~--------~~~~lt~~g~~~~----------i-~nG~~-------  163 (465)
T d1xfda1         115 KLQYAGWGPKGQQLIFIF---EN--NIYYCAHVGK--------QAIRVVSTGKEGV----------I-YNGLS-------  163 (465)
T ss_dssp             CCSBCCBCSSTTCEEEEE---TT--EEEEESSSSS--------CCEEEECCCBTTT----------E-EEEEC-------
T ss_pred             ccceeeeccCCceEEEEe---cc--eEEEEecCCC--------ceEEEecccCcce----------e-ecccc-------
Confidence              258999999 677887   33  8999998887        5566665442110          1 10000       


Q ss_pred             EEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEE--e
Q 039497          271 IEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFN--H  348 (642)
Q Consensus       271 i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~--~  348 (642)
                      -+++..  ........+.|||||++|+|.+.+....    ....+.......               .|.-+.+-|-  .
T Consensus       164 d~vyee--e~~~~~~a~~WSPDgk~iaf~~~D~s~V----~~~~~~~~~~~~---------------~p~~~~~~Yp~~G  222 (465)
T d1xfda1         164 DWLYEE--EILKTHIAHWWSPDGTRLAYAAINDSRV----PIMELPTYTGSI---------------YPTVKPYHYPKAG  222 (465)
T ss_dssp             CHHHHH--TTSSSSEEEEECTTSSEEEEEEEECTTS----CEEEECCCSSSS---------------SCCCEEEECCBTT
T ss_pred             chhhhh--hhccccceEEECCCCCeEEEEEeccccc----ceeecccccccc---------------cceeeeeeccccC
Confidence            000000  0001112345899999999987665421    111111111110               1111112221  1


Q ss_pred             cCCCceeEEEEECCCCCeeEEee--------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          349 DFELNAGIKIAKSDGSKRWTLIK--------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       349 ~~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                      .......|++++++++.......        ...+..+.|+||++.+++..++     ......++.++.  .     +|
T Consensus       223 ~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR-----~q~~~~i~~~d~--~-----tg  290 (465)
T d1xfda1         223 SENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR-----AQNVSILTLCDA--T-----TG  290 (465)
T ss_dssp             SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET-----TSCEEEEEEEET--T-----TC
T ss_pred             CCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcc-----ccccceEEEEcC--C-----CC
Confidence            11334678899998776544332        1124567899999866665542     345556666665  3     34


Q ss_pred             CccccceEEcccc-CCC----CccCcEECCCCCeEEEE--eCCCCceeEEEEECC------CCccccceeeCCCCCCccc
Q 039497          421 EEIPCDVKILTKE-ETG----NNAFPSCSPDGKFLVFR--SGRSGHKNLFVLDAV------NGEFNGDIRQLTDGPWIDT  487 (642)
Q Consensus       421 ~~~~~~~~~l~~~-~~~----~~~~~~~SpDg~~l~~~--~~~~g~~~l~~~d~~------~g~~~~~~~~l~~~~~~~~  487 (642)
                           ..+.+... ...    ....+.|+|||+.++|.  +.++|..++|.+.+.      .++.   .++||.+.+.+.
T Consensus       291 -----~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~---~~~LT~G~w~V~  362 (465)
T d1xfda1         291 -----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN---IQSITSGDWDVT  362 (465)
T ss_dssp             -----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC---CCBSCCSSSCEE
T ss_pred             -----cEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCce---eEEeccCCceEE
Confidence                 33433222 111    23468999999988774  566777788887643      2222   588999888877


Q ss_pred             ce-eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497          488 MP-SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM  566 (642)
Q Consensus       488 ~~-~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~  566 (642)
                      .+ .|+++++.|+|.+....   +...+||.++++++..+.+.......     .+....+.|||||++++......+. 
T Consensus       363 ~i~~~d~~~~~vyF~a~~~~---p~~~hly~v~l~g~~~~~~lt~~~~~-----~~~~~~~~~S~~~~y~v~~~s~~~~-  433 (465)
T d1xfda1         363 KILAYDEKGNKIYFLSTEDL---PRRRQLYSANTVGNFNRQCLSCDLVE-----NCTYFSASFSHSMDFFLLKCEGPGV-  433 (465)
T ss_dssp             EEEEEETTTTEEEEEESSSC---TTCCEEEEECSSTTCCCBCSSTTSSS-----SCCCCEEEECTTSSEEEEECCSSSS-
T ss_pred             EEEEEcCCCCEEEEEEeCCC---CCceEEEEEECCCCCcceeeccccCC-----CCCEEEEEECCCCCEEEEEeecCCC-
Confidence            76 79999999999987653   37789999999987554432221111     0145689999999999888765543 


Q ss_pred             cCCCCCCCCCCCCCcEEEEEcC-CCceeeccC
Q 039497          567 AEPVSWPNQFQPYGDLYVVKLD-GSGLRRLTW  597 (642)
Q Consensus       567 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lt~  597 (642)
                                   +.+.+++.. ++.++.|+.
T Consensus       434 -------------P~~~~~~~~~~~~~~~Le~  452 (465)
T d1xfda1         434 -------------PMVTVHNTTDKKKMFDLET  452 (465)
T ss_dssp             -------------CCEEEEETTTCCEEEEEEC
T ss_pred             -------------CeEEEEECCCCCEEEEEcC
Confidence                         245566655 444555553

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.88  E-value=5e-20  Score=193.36  Aligned_cols=385  Identities=13%  Similarity=0.113  Sum_probs=225.7

Q ss_pred             ceEEEEccCCceEecccCC------CccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC-
Q 039497          121 ALYSTDLKASKFTRLTPYG------VVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG-  193 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-  193 (642)
                      .|+++++.+++.++|....      .....++|||||++|||.+....+|...   ...++|++++++++.++++.... 
T Consensus        37 ~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s---~~~~~~l~d~~~~~~~~l~~~~~~  113 (470)
T d2bgra1          37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS---YTASYDIYDLNKRQLITEERIPNN  113 (470)
T ss_dssp             CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSC---EEEEEEEEETTTTEECCSSCCCTT
T ss_pred             cEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeec---cCceEEEEECCCCcccccccCCcc
Confidence            6899999999887765432      2235678999999999998766555433   45689999999998888776544 


Q ss_pred             -CcceEeeCCe-EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeE
Q 039497          194 -GWPTWSGDST-IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHI  271 (642)
Q Consensus       194 -~~~~wspdg~-~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i  271 (642)
                       ..+.|||||+ ++|+.   ++  +||.++..++        ...+++..+...  ..+.....+++             
T Consensus       114 ~~~~~~SPDG~~ia~~~---~~--~l~~~~~~~g--------~~~~~t~~~~~~--~~~~g~~d~~~-------------  165 (470)
T d2bgra1         114 TQWVTWSPVGHKLAYVW---NN--DIYVKIEPNL--------PSYRITWTGKED--IIYNGITDWVY-------------  165 (470)
T ss_dssp             EEEEEECSSTTCEEEEE---TT--EEEEESSTTS--------CCEECCSCCBTT--TEEESBCCHHH-------------
T ss_pred             ccccccccCcceeeEee---cc--cceEEECCCC--------ceeeeeeccCCC--cccccccceee-------------
Confidence             3679999995 66665   33  7999999888        556655443111  11110000000             


Q ss_pred             EEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC-CceeEEeeeCCCccEEcCCCCEEEEEecC
Q 039497          272 EIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP-VKELRMLRLNGSFPSFSPDGGLIVFNHDF  350 (642)
Q Consensus       272 ~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~  350 (642)
                           ..........+.|||||++|+|.+.+....    ....+...... .........     .+...|.       .
T Consensus       166 -----~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v----~~~~~~~~~~~~~~~~~~~~~-----~~~~~g~-------~  224 (470)
T d2bgra1         166 -----EEEVFSAYSALWWSPNGTFLAYAQFNDTEV----PLIEYSFYSDESLQYPKTVRV-----PYPKAGA-------V  224 (470)
T ss_dssp             -----HHHTSSSSBCEEECTTSSEEEEEEEECTTC----CEEEEEECCSTTCSSCEEEEE-----ECCBTTS-------C
T ss_pred             -----eeeecCCccccEECCCCCccceeEecCCcC----ceEEEEeeccCCCCCCeeeee-----ccccccc-------c
Confidence                 000111123356888888888887655421    00011110000 000000000     0000111       1


Q ss_pred             CCceeEEEEECCCCCeeEEee-------------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCC
Q 039497          351 ELNAGIKIAKSDGSKRWTLIK-------------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDD  417 (642)
Q Consensus       351 ~~~~~l~~~d~~~~~~~~l~~-------------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  417 (642)
                      .....++++++.++.......             ...+..+.|+++++.+++...+.   .+...+.++.++.  .    
T Consensus       225 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~---~~~~~~~~~~~d~--~----  295 (470)
T d2bgra1         225 NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI---QNYSVMDICDYDE--S----  295 (470)
T ss_dssp             CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS---TTEEEEEEEEEET--T----
T ss_pred             CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeecc---CCceEEEEEEecC--C----
Confidence            234567788877665432211             12345688999998776655421   1223445666654  2    


Q ss_pred             CCCCccccceEEccc---------c--CCCCccCcEECCCCCe-EEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497          418 NNREEIPCDVKILTK---------E--ETGNNAFPSCSPDGKF-LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI  485 (642)
Q Consensus       418 ~~~~~~~~~~~~l~~---------~--~~~~~~~~~~SpDg~~-l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~  485 (642)
                       ++     ....+..         .  .......+.|+++++. +++.+.+++..+||+++.+++.    ..+|+.+...
T Consensus       296 -tg-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~----~~~lt~g~~~  365 (470)
T d2bgra1         296 -SG-----RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD----CTFITKGTWE  365 (470)
T ss_dssp             -TT-----EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSC----CEESCCSSSC
T ss_pred             -CC-----cEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCc----eeeeccCCee
Confidence             22     2222211         0  0012245678877755 5677888899999999998776    4999988776


Q ss_pred             ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC-ceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS-GLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      +..+ +++|++.|+|.+.... ..+...+||.++++++ +.++|+......     ...+..++|||||++++.+....+
T Consensus       366 v~~~-~~~d~~~iyf~a~~~~-~~p~~~~ly~v~~~g~~~~~~lt~~~~~~-----~~~~~s~~fSpdgky~~~~~s~~~  438 (470)
T d2bgra1         366 VIGI-EALTSDYLYYISNEYK-GMPGGRNLYKIQLSDYTKVTCLSCELNPE-----RCQYYSVSFSKEAKYYQLRCSGPG  438 (470)
T ss_dssp             EEEE-EEECSSEEEEEESCGG-GCTTCBEEEEEETTCTTCEEESSTTTSTT-----TBCBEEEEECTTSSEEEEEECSBS
T ss_pred             EEEE-EEECCCEEEEEEecCC-CCcceEEEEEEECCCCCceeEecccccCC-----CCCEEEEEECCCCCEEEEEecCCC
Confidence            6654 7778899999876432 1235678999999875 455555321111     114568999999999998876554


Q ss_pred             cccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccC
Q 039497          565 VMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTW  597 (642)
Q Consensus       565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~  597 (642)
                      .              +-+.+++...++ ++.|+.
T Consensus       439 ~--------------P~~~l~~~~~g~~v~~le~  458 (470)
T d2bgra1         439 L--------------PLYTLHSSVNDKGLRVLED  458 (470)
T ss_dssp             S--------------CEEEEEETTTTEEEEEEEC
T ss_pred             C--------------CeEEEEECCCCCEEEEEec
Confidence            3              145566665554 555553

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=2.2e-21  Score=195.40  Aligned_cols=322  Identities=15%  Similarity=0.024  Sum_probs=203.6

Q ss_pred             CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCccc
Q 039497            3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTE   82 (642)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~   82 (642)
                      +|+.|+|+      ..|.||++++.+     +..++++ |...+..++|| |||++|++.+.++|.              
T Consensus        14 dG~~~a~~------~~g~v~v~d~~~-----~~~~~~~-~~~~v~~~~~s-pDg~~l~~~~~~~g~--------------   66 (360)
T d1k32a3          14 DGDLIAFV------SRGQAFIQDVSG-----TYVLKVP-EPLRIRYVRRG-GDTKVAFIHGTREGD--------------   66 (360)
T ss_dssp             GGGCEEEE------ETTEEEEECTTS-----SBEEECS-CCSCEEEEEEC-SSSEEEEEEEETTEE--------------
T ss_pred             CCCEEEEE------ECCeEEEEECCC-----CcEEEcc-CCCCEEEEEEC-CCCCEEEEEEcCCCC--------------
Confidence            48888888      667999999988     8888874 77888999999 999999987764332              


Q ss_pred             ccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCC
Q 039497           83 LLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESR  162 (642)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~  162 (642)
                                                            .|+++++.+++.+++..+.......+|||||++|++...+. 
T Consensus        67 --------------------------------------~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~-  107 (360)
T d1k32a3          67 --------------------------------------FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF-  107 (360)
T ss_dssp             --------------------------------------EEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS-
T ss_pred             --------------------------------------EEEEEECCCCcEEEeeCCCceEEeeeecccccccceecccc-
Confidence                                                  13333666677777777766667789999999999988666 


Q ss_pred             CCCCCCCCCeeeEEEEEecCCCceeEeecCC---CcceEeeCCeEEEE-EecC------CCceEEEEEecCCCcccccCC
Q 039497          163 PWPGEFHELNTDIVVFQESDPNKRVIVCERG---GWPTWSGDSTIYFH-RQAD------DGWWSIFRVSFPENLEFLGFP  232 (642)
Q Consensus       163 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~wspdg~~~~~-~~~~------~g~~~l~~~~~~~~~~~~~~~  232 (642)
                                 .+++|++.+++..++.....   ..++|+|||++++. ....      .....++.++..++       
T Consensus       108 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~-------  169 (360)
T d1k32a3         108 -----------EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-------  169 (360)
T ss_dssp             -----------EEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-------
T ss_pred             -----------ccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC-------
Confidence                       79999999999877766443   35799999975544 3211      12236778888887       


Q ss_pred             ccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCccc
Q 039497          233 IAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTI  312 (642)
Q Consensus       233 ~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  312 (642)
                       +...++.+......++|||||++|++...+.     .+.+|+.....      . ..+.+..+..              
T Consensus       170 -~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~-----~~~~~d~~~~~------~-~~~~~~~~~~--------------  222 (360)
T d1k32a3         170 -KIFAATTENSHDYAPAFDADSKNLYYLSYRS-----LDPSPDRVVLN------F-SFEVVSKPFV--------------  222 (360)
T ss_dssp             -EEEECSCSSSBEEEEEECTTSCEEEEEESCC-----CCCEECSSSSC------E-ECCSCBEEEE--------------
T ss_pred             -ceeeecccccccccccccCCCCEEEEEeCCC-----ceEcccccccc------e-eeccccceEE--------------
Confidence             5667777766677788999999999976544     33444431100      0 0000111100              


Q ss_pred             ceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec--CCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEE
Q 039497          313 PHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD--FELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIY  389 (642)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~--~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~  389 (642)
                         ..+         .......+.|+++++.++....  ......++.+++.++....+.. ......+.+.+.+....+
T Consensus       223 ---~~~---------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (360)
T d1k32a3         223 ---IPL---------IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY  290 (360)
T ss_dssp             ---EES---------STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred             ---Eec---------ccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeE
Confidence               000         0011123466777765543221  1223457777777766555544 333334444444432222


Q ss_pred             EEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497          390 TSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN  469 (642)
Q Consensus       390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~  469 (642)
                      ....    ..+..+.+|++..         +     +...+.    ..+..++|||||++|++.+.+   ..|++||+++
T Consensus       291 ~~~~----~~~~~i~~~d~~~---------~-----~~~~~~----~~v~~~~~SpDG~~l~~~~~D---g~i~v~d~~~  345 (360)
T d1k32a3         291 YQGA----PEKGVLLKYDVKT---------R-----KVTEVK----NNLTDLRLSADRKTVMVRKDD---GKIYTFPLEK  345 (360)
T ss_dssp             HHCC----CCCEEEEEEETTT---------C-----CEEEEE----EEEEEEEECTTSCEEEEEETT---SCEEEEESSC
T ss_pred             EEec----CCCCEEEEEECCC---------C-----eEEEec----CCcCEEEECCCCCEEEEEECC---CeEEEEECCC
Confidence            1111    2244555665432         2     333333    345678999999999988743   4899999998


Q ss_pred             Ccc
Q 039497          470 GEF  472 (642)
Q Consensus       470 g~~  472 (642)
                      |+.
T Consensus       346 ~~~  348 (360)
T d1k32a3         346 PED  348 (360)
T ss_dssp             TTS
T ss_pred             CCc
Confidence            875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.85  E-value=2.2e-19  Score=188.41  Aligned_cols=377  Identities=11%  Similarity=0.023  Sum_probs=214.3

Q ss_pred             CcceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCc------eeeeeceecCCCCCeEEEEEccCCCcceEEEcC
Q 039497            3 PKGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGT------SINFNAQFVDGQDQTIAFISERSGSPRIYQTRP   76 (642)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~------~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~   76 (642)
                      +++.++|.      .+++|+++++.+     +..++|..+.      .....+.|| |||++|||.+..   ..+|..  
T Consensus        26 ~d~~~~~~------~~~~~~~~~~~t-----~~~~~~~~~~~~~~~~~~i~~~~~S-pDg~~i~~~~~~---~~~~r~--   88 (470)
T d2bgra1          26 SDHEYLYK------QENNILVFNAEY-----GNSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNY---VKQWRH--   88 (470)
T ss_dssp             SSSEEEEE------SSSCEEEEETTT-----CCEEEEECTTTTTTSSSCCCEEEEC-TTSSEEEEEEEE---EECSSS--
T ss_pred             CCCEEEEE------cCCcEEEEECCC-----CCEEEEEchhhhhhccCccceeEEC-CCCCEEEEEECC---cceeee--
Confidence            45556665      467899999998     8777665433      456788999 999999997642   223322  


Q ss_pred             CCCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEE
Q 039497           77 GSSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAV  156 (642)
Q Consensus        77 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~  156 (642)
                                                              +..+++|++++++++..+++..+.....|+|||||++|||
T Consensus        89 ----------------------------------------s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~  128 (470)
T d2bgra1          89 ----------------------------------------SYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAY  128 (470)
T ss_dssp             ----------------------------------------CEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEE
T ss_pred             ----------------------------------------ccCceEEEEECCCCcccccccCCccccccccccCcceeeE
Confidence                                                    0012688889999999999998888888999999999999


Q ss_pred             EecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---------------------cceEeeCCe-EEEEEecCCCc
Q 039497          157 ASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---------------------WPTWSGDST-IYFHRQADDGW  214 (642)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---------------------~~~wspdg~-~~~~~~~~~g~  214 (642)
                      .++.             ++|+++..+++..+++.....                     .+.|||||+ ++|.+.+... 
T Consensus       129 ~~~~-------------~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~-  194 (470)
T d2bgra1         129 VWNN-------------DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE-  194 (470)
T ss_dssp             EETT-------------EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT-
T ss_pred             eecc-------------cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCc-
Confidence            8643             599999999998887753211                     124777773 4444322211 


Q ss_pred             eEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCC
Q 039497          215 WSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSE  294 (642)
Q Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~  294 (642)
                      ...+.+.......    ........        ......|.         ......++++++.........         
T Consensus       195 v~~~~~~~~~~~~----~~~~~~~~--------~~~~~~g~---------~~~~~~~~v~~~~~~~~~~~~---------  244 (470)
T d2bgra1         195 VPLIEYSFYSDES----LQYPKTVR--------VPYPKAGA---------VNPTVKFFVVNTDSLSSVTNA---------  244 (470)
T ss_dssp             CCEEEEEECCSTT----CSSCEEEE--------EECCBTTS---------CCCEEEEEEEEGGGCCSSSCC---------
T ss_pred             CceEEEEeeccCC----CCCCeeee--------eccccccc---------cCCcceEEEEECCCcceeeec---------
Confidence            1222211111000    00000000        00000000         011123344444221100000         


Q ss_pred             EEEEEEeecCCCCCCcccceEeecc-CCCceeEEeeeCCCccEEcCCCCEEEEEecCC-Cce--eEEEEECCCCCeeEEe
Q 039497          295 FIGYHRFRGESTEGQSTIPHLEPVA-SPVKELRMLRLNGSFPSFSPDGGLIVFNHDFE-LNA--GIKIAKSDGSKRWTLI  370 (642)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~--~l~~~d~~~~~~~~l~  370 (642)
                                      ......... .......+     ..+.|+++++.+++...+. ...  .++.+|..++....+.
T Consensus       245 ----------------~~~~~~~~~~~~~~~~~~-----~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~  303 (470)
T d2bgra1         245 ----------------TSIQITAPASMLIGDHYL-----CDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV  303 (470)
T ss_dssp             ----------------CEEEECCCHHHHTSCEEE-----EEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred             ----------------cccccCCccccCCCCceE-----EEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEE
Confidence                            000000000 00000000     1357888887666544332 222  4555666666554432


Q ss_pred             e--------c-----CCceeeeeecCCCEE-EEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC
Q 039497          371 K--------D-----RTAFYNSWSPTEKHV-IYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG  436 (642)
Q Consensus       371 ~--------~-----~~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  436 (642)
                      .        .     .....+.|+++++.. ++.+.      .++..+||.++.  +     ++     ....++.+. .
T Consensus       304 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~------~dg~~~ly~~~~--~-----g~-----~~~~lt~g~-~  364 (470)
T d2bgra1         304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN------EEGYRHICYFQI--D-----KK-----DCTFITKGT-W  364 (470)
T ss_dssp             GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC------TTSCEEEEEEET--T-----CS-----CCEESCCSS-S
T ss_pred             EEeeeeeeccceeecccCCCceeeecCCCcEEEEec------cCcCceeEEEec--c-----CC-----ceeeeccCC-e
Confidence            1        1     122456777877655 44443      367788998887  4     33     678887766 5


Q ss_pred             CccCcEECCCCCeEEEEeCCC----CceeEEEEECCCCccccceeeCCC----CCCcccceeEecCCCEEEEEecCCCCC
Q 039497          437 NNAFPSCSPDGKFLVFRSGRS----GHKNLFVLDAVNGEFNGDIRQLTD----GPWIDTMPSWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~----g~~~l~~~d~~~g~~~~~~~~l~~----~~~~~~~~~~spdG~~l~~~~~~~~~~  508 (642)
                      .+.. .+++|++.|+|++...    +..+||.+++.++..   .+.|+.    +......++|||||++++.......  
T Consensus       365 ~v~~-~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~---~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~--  438 (470)
T d2bgra1         365 EVIG-IEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTK---VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG--  438 (470)
T ss_dssp             CEEE-EEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTC---EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS--
T ss_pred             eEEE-EEEECCCEEEEEEecCCCCcceEEEEEEECCCCCc---eeEecccccCCCCCEEEEEECCCCCEEEEEecCCC--
Confidence            5544 3777889999987643    244799999987654   466653    3334567899999999888776553  


Q ss_pred             CCCceeEEEEeCCCCceEEee
Q 039497          509 NVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~~~~~l~  529 (642)
                         .+.+.+++..+++...+.
T Consensus       439 ---~P~~~l~~~~~g~~v~~l  456 (470)
T d2bgra1         439 ---LPLYTLHSSVNDKGLRVL  456 (470)
T ss_dssp             ---SCEEEEEETTTTEEEEEE
T ss_pred             ---CCeEEEEECCCCCEEEEE
Confidence               234667777766654444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.3e-18  Score=178.74  Aligned_cols=177  Identities=8%  Similarity=0.028  Sum_probs=111.2

Q ss_pred             ccEEcCCCCEEEEEecC-CCceeEEEEECCCCCeeEEee---cC----CceeeeeecCCCEEEEEEcCCCcccCCCeEEE
Q 039497          334 FPSFSPDGGLIVFNHDF-ELNAGIKIAKSDGSKRWTLIK---DR----TAFYNSWSPTEKHVIYTSTGPIFQSERATVQI  405 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~-~~~~~l~~~d~~~~~~~~l~~---~~----~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l  405 (642)
                      .+.|+||++.+++...+ .....|+++|..+++.+.+..   ..    ....+.|+|||+.++|....    ...+.-++
T Consensus       259 ~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s----e~~g~~~l  334 (465)
T d1xfda1         259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI----PQGGRGKF  334 (465)
T ss_dssp             EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE----CCSSSSCE
T ss_pred             eeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEee----eecccCce
Confidence            35799999866554443 455679999999998777654   21    23468999999988876421    12233334


Q ss_pred             EEEEeecCCCCCCCCCccccceEEccccCCCCccC-cEECCCCCeEEEEeCCC--CceeEEEEECCCCccccceeeCCCC
Q 039497          406 ARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAF-PSCSPDGKFLVFRSGRS--GHKNLFVLDAVNGEFNGDIRQLTDG  482 (642)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~~~~~l~~~  482 (642)
                      +.+..........++     ..+.|+.+. ..+.. +.|.++++.|+|.+...  +..+||.++++++..   .+.|+..
T Consensus       335 y~~~~~~~~~~~~~~-----~~~~LT~G~-w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~---~~~lt~~  405 (465)
T d1xfda1         335 YHITVSSSQPNSSND-----NIQSITSGD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN---RQCLSCD  405 (465)
T ss_dssp             EEEEEECSSCCSSSC-----CCCBSCCSS-SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC---CBCSSTT
T ss_pred             EEEEeccccccCCCc-----eeEEeccCC-ceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc---ceeeccc
Confidence            443320010000122     567788776 55544 47999999999998754  355899999986654   2434421


Q ss_pred             ---CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEe
Q 039497          483 ---PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRI  528 (642)
Q Consensus       483 ---~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l  528 (642)
                         ......+.|||||++++......     +.+.+.+++..+++....
T Consensus       406 ~~~~~~~~~~~~S~~~~y~v~~~s~~-----~~P~~~~~~~~~~~~~~~  449 (465)
T d1xfda1         406 LVENCTYFSASFSHSMDFFLLKCEGP-----GVPMVTVHNTTDKKKMFD  449 (465)
T ss_dssp             SSSSCCCCEEEECTTSSEEEEECCSS-----SSCCEEEEETTTCCEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeecC-----CCCeEEEEECCCCCEEEE
Confidence               22346789999999988777654     334466777665554433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=1.7e-16  Score=163.70  Aligned_cols=363  Identities=10%  Similarity=0.052  Sum_probs=201.4

Q ss_pred             CCCEEEEEEeccCCCcccccccceEEEEccCCceE-ecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEE
Q 039497           99 RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFT-RLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVV  177 (642)
Q Consensus        99 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~  177 (642)
                      +.+.++++...+.+        .|.++|+.+++.. .|..+ ......+|||||++|+.+..+.            .|.+
T Consensus        29 d~~~~~~V~~~~dg--------~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~------------~v~v   87 (426)
T d1hzua2          29 DLPNLFSVTLRDAG--------QIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDA------------RIDM   87 (426)
T ss_dssp             CGGGEEEEEETTTT--------EEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTS------------EEEE
T ss_pred             CCCeEEEEEEcCCC--------EEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCC------------CEEE
Confidence            44455555554432        6777799988764 44433 3456689999999998776444            6889


Q ss_pred             EEecCCCceeEee---cCC-----CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccce
Q 039497          178 FQESDPNKRVIVC---ERG-----GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPA  249 (642)
Q Consensus       178 ~~~~~g~~~~l~~---~~~-----~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  249 (642)
                      |++.+++...+..   ..+     ..++|+|||+.+++....++  .+..++..++.       ....+..+...+...+
T Consensus        88 wd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~--~v~i~d~~~~~-------~~~~~~~~~~~~~~~~  158 (426)
T d1hzua2          88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP--QFAIMDGETLE-------PKQIVSTRGMTVDTQT  158 (426)
T ss_dssp             EETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESS--EEEEEETTTCC-------EEEEEECCEECSSSCC
T ss_pred             EEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCC--eEEEEcCCccc-------eeEEeeccCCCcccee
Confidence            9999988554332   111     14688999987666644455  55666777662       2233333333444556


Q ss_pred             eecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEee
Q 039497          250 AFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLR  329 (642)
Q Consensus       250 ~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (642)
                      +++++...+.+                            .++|++.+++......      ........+.....+....
T Consensus       159 ~~~~~~~~~i~----------------------------~s~d~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~  204 (426)
T d1hzua2         159 YHPEPRVAAII----------------------------ASHEHPEFIVNVKETG------KVLLVNYKDIDNLTVTSIG  204 (426)
T ss_dssp             EESCCCEEEEE----------------------------ECSSSSEEEEEETTTT------EEEEEECSSSSSCEEEEEE
T ss_pred             ecCCCceeEEE----------------------------ECCCCCEEEEecCCCC------eEEEEEeccccceeeEEec
Confidence            66676654442                            2333333333211111      0001111111111111111


Q ss_pred             eC--CCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec----CCceeeeeecCCCEEEEEEcCCCcccCCCeE
Q 039497          330 LN--GSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD----RTAFYNSWSPTEKHVIYTSTGPIFQSERATV  403 (642)
Q Consensus       330 ~~--~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  403 (642)
                      ..  .....++|+|++++....  ....+.+++...++.......    .......+..++...++....    ..+..+
T Consensus       205 ~~~~~~~~~~~~~g~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~v  278 (426)
T d1hzua2         205 AAPFLADGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH----LGDGSI  278 (426)
T ss_dssp             CCSSEEEEEECTTSCEEEEEET--TCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC----TTTCEE
T ss_pred             cCCccEeeeECCCCcEEEeeee--cccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc----CCCceE
Confidence            11  124589999998777653  356777888888776655441    112233344444333332211    224444


Q ss_pred             EEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC----CceeEEEEECCCCccccceee-
Q 039497          404 QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS----GHKNLFVLDAVNGEFNGDIRQ-  478 (642)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~----g~~~l~~~d~~~g~~~~~~~~-  478 (642)
                      .++....  ........+    ....+..+. ..+..++|||||++|+......    ....|.+||+++++.   ... 
T Consensus       279 ~~~~~~~--~~~~~~~~~----~~~~l~g~~-~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~---~~~~  348 (426)
T d1hzua2         279 SLIGTDP--KNHPQYAWK----KVAELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA---KYQV  348 (426)
T ss_dssp             EEEECCT--TTCTTTBTS----EEEEEECSS-SCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTS---CCEE
T ss_pred             EEeeccc--cccccccce----EeEEEecCC-CceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCc---CeEE
Confidence            4444322  100000110    334444444 5677899999999998654221    123799999998875   222 


Q ss_pred             --------CCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEc
Q 039497          479 --------LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS  550 (642)
Q Consensus       479 --------l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S  550 (642)
                              +..+...+.+++|||||++|+++.....   .....|.+||.++.++......              ...++
T Consensus       349 ~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~---~~~~~i~v~D~~T~k~~~~i~~--------------~~~~t  411 (426)
T d1hzua2         349 LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK---NDSSALVVVDDKTLKLKAVVKD--------------PRLIT  411 (426)
T ss_dssp             ECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCT---TSCCEEEEEETTTTEEEEEECC--------------TTCCS
T ss_pred             eccchhcccCCCCccEEEEEECCCCCEEEEEEecCC---CCCCeEEEEECCCCeEEEEECC--------------CCccC
Confidence                    2334445677899999999988753221   1344599999999887665532              12457


Q ss_pred             CCCCEEEE
Q 039497          551 ADGEWLLF  558 (642)
Q Consensus       551 ~Dg~~l~~  558 (642)
                      |+|++-++
T Consensus       412 p~Gk~~~~  419 (426)
T d1hzua2         412 PTGKFNVY  419 (426)
T ss_dssp             EEEEEEHH
T ss_pred             CCceEeEe
Confidence            89987544

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6e-17  Score=161.55  Aligned_cols=277  Identities=15%  Similarity=0.112  Sum_probs=184.7

Q ss_pred             CCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCcee---Eee--cCCC---cceEeeCCeEEEEEe
Q 039497          138 YGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRV---IVC--ERGG---WPTWSGDSTIYFHRQ  209 (642)
Q Consensus       138 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---l~~--~~~~---~~~wspdg~~~~~~~  209 (642)
                      +.......+|||||++||... ++            .|.+|++..+....   ...  .+..   .++|+|||.++++. 
T Consensus        50 H~~~V~~v~fs~~g~~latg~-dg------------~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~-  115 (337)
T d1gxra_          50 HGEVVCAVTISNPTRHVYTGG-KG------------CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG-  115 (337)
T ss_dssp             CSSCCCEEEECSSSSEEEEEC-BS------------EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE-
T ss_pred             CCCcEEEEEECCCCCEEEEEE-CC------------EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEe-
Confidence            444566789999999999875 23            58899988764322   111  1122   35999999888777 


Q ss_pred             cCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCee
Q 039497          210 ADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFV  289 (642)
Q Consensus       210 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  289 (642)
                      ..+|...||.+......       ....+..+...+....++|++..++......     .+.+|++...          
T Consensus       116 ~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~~~~~~~~----------  173 (337)
T d1gxra_         116 GEASTLSIWDLAAPTPR-------IKAELTSSAPACYALAISPDSKVCFSCCSDG-----NIAVWDLHNQ----------  173 (337)
T ss_dssp             ESSSEEEEEECCCC--E-------EEEEEECSSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTT----------
T ss_pred             ecccccccccccccccc-------ccccccccccccccccccccccccccccccc-----cccccccccc----------
Confidence            56786666655433331       2334455555566778899999888755443     6777776211          


Q ss_pred             cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE
Q 039497          290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL  369 (642)
Q Consensus       290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l  369 (642)
                          + +...                  .......       ...+.|+++++.++....   ...+.++|+..++....
T Consensus       174 ----~-~~~~------------------~~~~~~~-------v~~l~~s~~~~~~~~~~~---d~~v~i~d~~~~~~~~~  220 (337)
T d1gxra_         174 ----T-LVRQ------------------FQGHTDG-------ASCIDISNDGTKLWTGGL---DNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             ----E-EEEE------------------ECCCSSC-------EEEEEECTTSSEEEEEET---TSEEEEEETTTTEEEEE
T ss_pred             ----c-cccc------------------ccccccc-------cccccccccccccccccc---cccccccccccceeecc
Confidence                1 0000                  0000001       123578999998888654   36788889987765443


Q ss_pred             ee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCC
Q 039497          370 IK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK  448 (642)
Q Consensus       370 ~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~  448 (642)
                      .. ...+..+.|+|+++.|+....       ++.+.+|++..         +     .......+. ..+..+.|+|||+
T Consensus       221 ~~~~~~i~~l~~~~~~~~l~~~~~-------d~~i~i~d~~~---------~-----~~~~~~~~~-~~i~~v~~s~~g~  278 (337)
T d1gxra_         221 HDFTSQIFSLGYCPTGEWLAVGME-------SSNVEVLHVNK---------P-----DKYQLHLHE-SCVLSLKFAYCGK  278 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTS---------S-----CEEEECCCS-SCEEEEEECTTSS
T ss_pred             cccccceEEEEEcccccccceecc-------ccccccccccc---------c-----ccccccccc-cccceEEECCCCC
Confidence            33 667889999999999987764       67889998855         2     333334444 5678899999999


Q ss_pred             eEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeC
Q 039497          449 FLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP  520 (642)
Q Consensus       449 ~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~  520 (642)
                      +|+..+.+   ..|.+||+.+++.   +.. ..+...+..++|+|||++|+..+.++.        |.+||+
T Consensus       279 ~l~s~s~D---g~i~iwd~~~~~~---~~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~--------I~vWdl  335 (337)
T d1gxra_         279 WFVSTGKD---NLLNAWRTPYGAS---IFQ-SKESSSVLSCDISVDDKYIVTGSGDKK--------ATVYEV  335 (337)
T ss_dssp             EEEEEETT---SEEEEEETTTCCE---EEE-EECSSCEEEEEECTTSCEEEEEETTSC--------EEEEEE
T ss_pred             EEEEEeCC---CeEEEEECCCCCE---EEE-ccCCCCEEEEEEeCCCCEEEEEeCCCe--------EEEEEE
Confidence            98877643   3799999998885   343 334466788899999999988877654        888875

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-16  Score=158.99  Aligned_cols=274  Identities=11%  Similarity=0.069  Sum_probs=186.4

Q ss_pred             CCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeecc
Q 039497          240 PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVA  319 (642)
Q Consensus       240 ~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~  319 (642)
                      .+...+..++|||||++|+... +     ..|.+||+.......                            ........
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-d-----g~V~iWd~~~~~~~~----------------------------~~~~~~~~   94 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-K-----GCVKVWDISHPGNKS----------------------------PVSQLDCL   94 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-B-----SEEEEEETTSTTCCS----------------------------CSEEEECS
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-C-----CEEEEEEccCCcccc----------------------------eeEEeeec
Confidence            4455678889999999988742 2     279999983321100                            00000000


Q ss_pred             CCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCC
Q 039497          320 SPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPI  395 (642)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~  395 (642)
                      .....+       ...+|+|||+.|+....   ...|.++++.....+....    ...+....|+|++..++..+.   
T Consensus        95 ~h~~~I-------~~v~~s~dg~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---  161 (337)
T d1gxra_          95 NRDNYI-------RSCKLLPDGCTLIVGGE---ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS---  161 (337)
T ss_dssp             CTTSBE-------EEEEECTTSSEEEEEES---SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET---
T ss_pred             CCCCcE-------EEEEEcCCCCEEEEeec---cccccccccccccccccccccccccccccccccccccccccccc---
Confidence            000111       24589999998887654   3578888877654333222    445678899999998887763   


Q ss_pred             cccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccc
Q 039497          396 FQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGD  475 (642)
Q Consensus       396 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~  475 (642)
                          +..+.+|++..         +.    .......+. ..+..+.|+++++.++..+.+   ..+.+||+.+++.   
T Consensus       162 ----d~~i~~~~~~~---------~~----~~~~~~~~~-~~v~~l~~s~~~~~~~~~~~d---~~v~i~d~~~~~~---  217 (337)
T d1gxra_         162 ----DGNIAVWDLHN---------QT----LVRQFQGHT-DGASCIDISNDGTKLWTGGLD---NTVRSWDLREGRQ---  217 (337)
T ss_dssp             ----TSCEEEEETTT---------TE----EEEEECCCS-SCEEEEEECTTSSEEEEEETT---SEEEEEETTTTEE---
T ss_pred             ----ccccccccccc---------cc----ccccccccc-ccccccccccccccccccccc---cccccccccccee---
Confidence                56788887744         20    233333333 567788999999999887743   4799999998875   


Q ss_pred             eeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCE
Q 039497          476 IRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEW  555 (642)
Q Consensus       476 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~  555 (642)
                      +..+ .....+..++|+|++++|+....++.        |++||+..++.....  .+..       .+..+.|+|||++
T Consensus       218 ~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~--------i~i~d~~~~~~~~~~--~~~~-------~i~~v~~s~~g~~  279 (337)
T d1gxra_         218 LQQH-DFTSQIFSLGYCPTGEWLAVGMESSN--------VEVLHVNKPDKYQLH--LHES-------CVLSLKFAYCGKW  279 (337)
T ss_dssp             EEEE-ECSSCEEEEEECTTSSEEEEEETTSC--------EEEEETTSSCEEEEC--CCSS-------CEEEEEECTTSSE
T ss_pred             eccc-ccccceEEEEEcccccccceeccccc--------ccccccccccccccc--cccc-------ccceEEECCCCCE
Confidence            3433 34456778899999999988877654        999999887765433  3344       5788999999998


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecC
Q 039497          556 LLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       556 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      |+..+.++                 .|.+|+...++......+...+.+++||||+++|++...
T Consensus       280 l~s~s~Dg-----------------~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~  326 (337)
T d1gxra_         280 FVSTGKDN-----------------LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             EEEEETTS-----------------EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred             EEEEeCCC-----------------eEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeC
Confidence            88776553                 788899988776655556667788999999999987543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=1.6e-17  Score=171.43  Aligned_cols=370  Identities=9%  Similarity=-0.039  Sum_probs=204.2

Q ss_pred             ceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cCC------
Q 039497          121 ALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ERG------  193 (642)
Q Consensus       121 ~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~------  193 (642)
                      .+.++|.++++...-..........+|||||++|+.++.+.            .|.+|++.+++.+.+.. ..+      
T Consensus        43 ~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg------------~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          43 QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDG------------KVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS------------EEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCC------------CEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            68888999988765444444456789999999999876544            68899998887554432 111      


Q ss_pred             -CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497          194 -GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE  272 (642)
Q Consensus       194 -~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~  272 (642)
                       ..+.|||||+.+++....++  .+..++..+++       ....+..+........++++++.+++             
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~--~v~i~d~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v-------------  168 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPP--QYVIMDGETLE-------PKKIQSTRGMTYDEQEYHPEPRVAAI-------------  168 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETT--EEEEEETTTCC-------EEEEEECCEECTTTCCEESCCCEEEE-------------
T ss_pred             EEecccCCCCCEEEEEcCCCC--eEEEEeCcccc-------ceeeeccCCccccceeccCCCceeEE-------------
Confidence             14578999987665544456  56666777763       22233333323333445555554433             


Q ss_pred             EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccC-CCceeEEeeeC--CCccEEcCCCCEEEEEec
Q 039497          273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVAS-PVKELRMLRLN--GSFPSFSPDGGLIVFNHD  349 (642)
Q Consensus       273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~spdg~~l~~~~~  349 (642)
                                     ..||||+.+++......       ..++..... ....+......  .....++|||++++....
T Consensus       169 ---------------~~s~dg~~~~vs~~~~~-------~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         169 ---------------LASHYRPEFIVNVKETG-------KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             ---------------EECSSSSEEEEEETTTT-------EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             ---------------EECCCCCEEEEEEccCC-------eEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc
Confidence                           23455554444322111       111121111 11111111111  124689999998887663


Q ss_pred             CCCceeEEEEECCCCCeeEEee-cC------CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCc
Q 039497          350 FELNAGIKIAKSDGSKRWTLIK-DR------TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREE  422 (642)
Q Consensus       350 ~~~~~~l~~~d~~~~~~~~l~~-~~------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  422 (642)
                        ....+.+++.+..+...... ..      ......+ +.+..+.....     ..+..+.++....            
T Consensus       227 --~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~~~~~~~-----lg~~~v~~~~~~~------------  286 (432)
T d1qksa2         227 --ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH-PTFGPVWATSH-----MGDDSVALIGTDP------------  286 (432)
T ss_dssp             --GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE-TTTEEEEEEEB-----SSSSEEEEEECCT------------
T ss_pred             --ccceEEEeecccceEEEEeccCccccccCcccceec-CCCCceecccc-----cCCceEEeccccc------------
Confidence              34678888988877665544 11      1112222 33333333332     2244555554322            


Q ss_pred             cccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEe
Q 039497          423 IPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSS  502 (642)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~  502 (642)
                           ..+.... ..+....++|+|..++..+..+   ..++|...+...         +......++ .|||+.|+..+
T Consensus       287 -----~~~~~~~-~~v~~~~~~~~g~~~~~~s~p~---~~~lw~~~~~~~---------~~~~~~sv~-vpDg~~la~~s  347 (432)
T d1qksa2         287 -----EGHPDNA-WKILDSFPALGGGSLFIKTHPN---SQYLYVDATLNP---------EAEISGSVA-VFDIKAMTGDG  347 (432)
T ss_dssp             -----TTCTTTB-TSEEEEEECSCSCCCCEECCTT---CSEEEEECTTCS---------SHHHHTCEE-EEEGGGCCCSS
T ss_pred             -----ccccccc-cEEEEEEEcCCCCeEEEEecCC---ccceeecccCCC---------CCCeeeEEE-EEechhhcccc
Confidence                 1112222 3455568899988877666443   344444433321         111122334 38999888777


Q ss_pred             cCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcE
Q 039497          503 NRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDL  582 (642)
Q Consensus       503 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  582 (642)
                      .+..        +.+|++..+  ..++  ....       .+.++.|||||++|+++.-.+..            ..+.|
T Consensus       348 ~d~~--------~k~w~~~~~--~~l~--~~~~-------~v~~~~fS~DG~~v~~S~~~~~~------------~~g~i  396 (432)
T d1qksa2         348 SDPE--------FKTLPIAEW--AGIT--EGQP-------RVVQGEFNKDGTEVWFSVWNGKD------------QESAL  396 (432)
T ss_dssp             SCCC--------EEEECHHHH--HTCC--SSCC-------EEEEEEECTTSSEEEEEEECCTT------------SCCEE
T ss_pred             cCCc--------eEecccccc--cccC--CCCC-------cEEEeEECCCCCEEEEEEecCCC------------CCCcE
Confidence            6654        777876332  2222  1122       46689999999999888643221            13479


Q ss_pred             EEEEcCCCceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          583 YVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       583 ~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      -+||..+.++......     .+.++|+|.+-+.+...+
T Consensus       397 ~i~D~~T~k~~~~i~~-----~~~~tp~G~~~~~~~~~~  430 (432)
T d1qksa2         397 VVVDDKTLELKHVIKD-----ERLVTPTGKFNVYNTMTD  430 (432)
T ss_dssp             EEEETTTTEEEEEECC-----TTCCSEEEEEEHHHHHTT
T ss_pred             EEEECCCceEEeEecC-----CCccCCCeeEEEEEeccc
Confidence            9999998876544332     235689998866554443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=1.9e-16  Score=163.37  Aligned_cols=378  Identities=8%  Similarity=-0.007  Sum_probs=209.7

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEE
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFR  219 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~  219 (642)
                      ...+.+++|.+.++++....          ...|.+||+.+++.........  ..++|||||+.+|+. ..++  .|..
T Consensus        21 p~~~~~~~d~~~~~~V~~~~----------dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~-~~d~--~v~v   87 (426)
T d1hzua2          21 PKKQLNDLDLPNLFSVTLRD----------AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVI-GRDA--RIDM   87 (426)
T ss_dssp             CSSCCSCCCGGGEEEEEETT----------TTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEE-ETTS--EEEE
T ss_pred             CCcccccCCCCeEEEEEEcC----------CCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEE-eCCC--CEEE
Confidence            34577889988776554433          3489999999998765544322  246999999988887 4566  5666


Q ss_pred             EecCCCcccccCCccceeeCC---CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEE
Q 039497          220 VSFPENLEFLGFPIAPTRVTP---PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFI  296 (642)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l  296 (642)
                      +++.+++.     ....++..   +...+..++|||||++|++.....    ..+.+||.....              .+
T Consensus        88 wd~~t~~~-----~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~----~~v~i~d~~~~~--------------~~  144 (426)
T d1hzua2          88 IDLWAKEP-----TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP----PQFAIMDGETLE--------------PK  144 (426)
T ss_dssp             EETTSSSC-----EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES----SEEEEEETTTCC--------------EE
T ss_pred             EEccCCce-----eEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC----CeEEEEcCCccc--------------ee
Confidence            67766521     01122221   222355778899999988765433    277788763221              11


Q ss_pred             EEEEeecCCCCCCcccceEeeccCCCceeEEeee-CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEe---ec
Q 039497          297 GYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL-NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLI---KD  372 (642)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~---~~  372 (642)
                      .........                ......... .......++|++.+++...  +...+..++........+.   ..
T Consensus       145 ~~~~~~~~~----------------~~~~~~~~~~~~~~i~~s~d~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~  206 (426)
T d1hzua2         145 QIVSTRGMT----------------VDTQTYHPEPRVAAIIASHEHPEFIVNVK--ETGKVLLVNYKDIDNLTVTSIGAA  206 (426)
T ss_dssp             EEEECCEEC----------------SSSCCEESCCCEEEEEECSSSSEEEEEET--TTTEEEEEECSSSSSCEEEEEECC
T ss_pred             EEeeccCCC----------------ccceeecCCCceeEEEECCCCCEEEEecC--CCCeEEEEEeccccceeeEEeccC
Confidence            111100000                000000000 0123467888888777653  3456777766655433332   25


Q ss_pred             CCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEE
Q 039497          373 RTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLV  451 (642)
Q Consensus       373 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~  451 (642)
                      .....+.|+|++++++....      ....+.+++...         +.    ....+.... ........+..++...+
T Consensus       207 ~~~~~~~~~~~g~~~~~a~~------~~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (426)
T d1hzua2         207 PFLADGGWDSSHRYFMTAAN------NSNKVAVIDSKD---------RR----LSALVDVGKTPHPGRGANFVHPKYGPV  267 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEET------TCSEEEEEETTT---------TE----EEEEEECSSCCCCSCCEEEEETTTEEE
T ss_pred             CccEeeeECCCCcEEEeeee------cccceeeeeccc---------cc----EEEEeccCCcccccceeeeecCCCCce
Confidence            66788999999999988774      244555554432         21    111111111 01122334444444444


Q ss_pred             EEeCCCCceeEEEEECCCCccc----cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE-
Q 039497          452 FRSGRSGHKNLFVLDAVNGEFN----GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR-  526 (642)
Q Consensus       452 ~~~~~~g~~~l~~~d~~~g~~~----~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-  526 (642)
                      +.....+...+..++.......    +....+..+...+..++|||||++|+........ ......|.+||+++++.. 
T Consensus       268 ~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s-~~~~~tv~vwd~~t~~~~~  346 (426)
T d1hzua2         268 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD-ARISQSVAVFDLKNLDAKY  346 (426)
T ss_dssp             EEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSS-HHHHTCEEEEETTCTTSCC
T ss_pred             EEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCC-cccCCEEEEEECCCCCcCe
Confidence            3333334445666665443210    1134455555567788999999999875432100 001234999999877542 


Q ss_pred             Eeeec-------CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC
Q 039497          527 RIHVA-------GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG  599 (642)
Q Consensus       527 ~l~~~-------~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~  599 (642)
                      .+...       ....       .+.+++|||||++|+++......            ..+.|.+||..+.++.......
T Consensus       347 ~~~~~~~~~~~~~~~~-------rv~~~~fSpDGk~i~vs~~~~~~------------~~~~i~v~D~~T~k~~~~i~~~  407 (426)
T d1hzua2         347 QVLPIAEWADLGEGAK-------RVVQPEYNKRGDEVWFSVWNGKN------------DSSALVVVDDKTLKLKAVVKDP  407 (426)
T ss_dssp             EEECHHHHHCCCSSCC-------CEEEEEECSSSSEEEEEECCCTT------------SCCEEEEEETTTTEEEEEECCT
T ss_pred             EEeccchhcccCCCCc-------cEEEEEECCCCCEEEEEEecCCC------------CCCeEEEEECCCCeEEEEECCC
Confidence            23210       1111       46788999999999876422111            1237999999988765443321


Q ss_pred             CCCCCcEEecCCceEEee
Q 039497          600 YENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       600 ~~~~~~~~s~dg~~~~~~  617 (642)
                           +.++|+|++.+.+
T Consensus       408 -----~~~tp~Gk~~~~~  420 (426)
T d1hzua2         408 -----RLITPTGKFNVYN  420 (426)
T ss_dssp             -----TCCSEEEEEEHHH
T ss_pred             -----CccCCCceEeEec
Confidence                 3567999886544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=3.5e-17  Score=158.39  Aligned_cols=87  Identities=18%  Similarity=0.265  Sum_probs=65.5

Q ss_pred             eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCC
Q 039497          427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHN  506 (642)
Q Consensus       427 ~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~  506 (642)
                      ...+.... .....+.++++  .+++.....+..+||++|+++++    .++|+.... ...+.|||||+.|+|....  
T Consensus       184 ~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~----~~~lt~~~~-~~~~~~SpDG~~I~f~~~~--  253 (281)
T d1k32a2         184 FKKIVDMS-THVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKD----LRKHTSFTD-YYPRHLNTDGRRILFSKGG--  253 (281)
T ss_dssp             EEEEECCS-SCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCS----CEECCCCCS-SCEEEEEESSSCEEEEETT--
T ss_pred             eeeccCCc-cccceeeeecc--ccceecccccccceEEEeCCCCc----eEEeecCCC-cccccCcCCCCEEEEEeCC--
Confidence            34444433 44556677765  67888888888899999999877    488887543 2345899999999997753  


Q ss_pred             CCCCCceeEEEEeCCCCceEEeee
Q 039497          507 PDNVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       507 ~~~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                             .||++|+++++.++|..
T Consensus       254 -------~l~~~d~~~g~~~~i~~  270 (281)
T d1k32a2         254 -------SIYIFNPDTEKIEKIEI  270 (281)
T ss_dssp             -------EEEEECTTTCCEEECCC
T ss_pred             -------EEEEEECCCCCEEEecc
Confidence                   39999999999999875

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=4.3e-16  Score=153.27  Aligned_cols=281  Identities=13%  Similarity=0.049  Sum_probs=180.9

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY  274 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~  274 (642)
                      .++++|+|..++...  ++  .++.+++.+..       ....+..+...+..++|||||++|+....++     .|.+|
T Consensus        22 ~~a~~~~g~~l~~~~--~~--~v~i~~~~~~~-------~~~~~~~H~~~v~~~~~sp~g~~latg~~dg-----~i~iw   85 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCN--GT--SVYTVPVGSLT-------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHG-----NVRIW   85 (311)
T ss_dssp             CCEECTTSSEEEEEE--TT--EEEEEETTCSS-------CCEEECCCSSCEEEEEECTTSSEEEEEETTS-----EEEEE
T ss_pred             EEEEcCCCCEEEEEe--CC--EEEEEECCCCc-------eeEEEcCCCCCEEEEEEeCCCCeEeccccCc-----eEeee
Confidence            468999996665542  23  46777777663       4456677766788899999999998865544     89999


Q ss_pred             EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce
Q 039497          275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA  354 (642)
Q Consensus       275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  354 (642)
                      |+.....              +..                 ..+......       ...+.|+|||+.|+..+. +...
T Consensus        86 d~~~~~~--------------~~~-----------------~~~~~~~~~-------v~~v~~s~d~~~l~~~~~-~~~~  126 (311)
T d1nr0a1          86 DTTQTTH--------------ILK-----------------TTIPVFSGP-------VKDISWDSESKRIAAVGE-GRER  126 (311)
T ss_dssp             ESSSTTC--------------CEE-----------------EEEECSSSC-------EEEEEECTTSCEEEEEEC-CSSC
T ss_pred             eeecccc--------------ccc-----------------cccccccCc-------cccccccccccccccccc-cccc
Confidence            8832210              000                 000000001       124589999998888764 2234


Q ss_pred             eEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497          355 GIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK  432 (642)
Q Consensus       355 ~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (642)
                      .+.+++.+.++......  ...+..+.|+|+++.++.+..      .++.+++|++..        ..     ....+..
T Consensus       127 ~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs------~d~~i~i~d~~~--------~~-----~~~~~~~  187 (311)
T d1nr0a1         127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS------DDNTVAIFEGPP--------FK-----FKSTFGE  187 (311)
T ss_dssp             SEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE------TTSCEEEEETTT--------BE-----EEEEECC
T ss_pred             cccccccccccccccccccccccccccccccceeeecccc------cccccccccccc--------cc-----ccccccc
Confidence            46667777665433222  456788999999997555442      367889998754        11     3344444


Q ss_pred             cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-------CCCcccceeEecCCCEEEEEecCC
Q 039497          433 EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-------GPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       433 ~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-------~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      +. ..+..+.|+|||++|+..+.+   ..|.+|+..+++.   ...+..       +...+..++|+|||++|+..+.++
T Consensus       188 ~~-~~i~~v~~~p~~~~l~~~~~d---~~v~~~d~~~~~~---~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         188 HT-KFVHSVRYNPDGSLFASTGGD---GTIVLYNGVDGTK---TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             CS-SCEEEEEECTTSSEEEEEETT---SCEEEEETTTCCE---EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cc-ccccccccCcccccccccccc---ccccccccccccc---cccccccccccccccccccccccCCCCCEEEEEeCCC
Confidence            44 667889999999999877643   3789999987764   333321       234567789999999998877655


Q ss_pred             CCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEE
Q 039497          506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV  585 (642)
Q Consensus       506 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  585 (642)
                      .        |++||+.+++...........       ......+.++++.|+..+.++                 .|..|
T Consensus       261 ~--------v~iwd~~t~~~~~~l~~~~~~-------~~~~~~~~~~~~~l~s~s~dG-----------------~i~~w  308 (311)
T d1nr0a1         261 T--------IKIWNVATLKVEKTIPVGTRI-------EDQQLGIIWTKQALVSISANG-----------------FINFV  308 (311)
T ss_dssp             E--------EEEEETTTTEEEEEEECCSSG-------GGCEEEEEECSSCEEEEETTC-----------------CEEEE
T ss_pred             e--------EEEEECCCCcEEEEEECCCCc-------cceEEEEEecCCEEEEEECCC-----------------EEEEE
Confidence            3        999999888765433322211       122345556667787776554                 78888


Q ss_pred             EcC
Q 039497          586 KLD  588 (642)
Q Consensus       586 ~~~  588 (642)
                      |++
T Consensus       309 d~d  311 (311)
T d1nr0a1         309 NPE  311 (311)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=8.8e-17  Score=155.55  Aligned_cols=238  Identities=16%  Similarity=0.159  Sum_probs=161.4

Q ss_pred             cceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCceeeeeceecCCCCCeEEEEEccCCC---cceEEEcCCCCc
Q 039497            4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGTSINFNAQFVDGQDQTIAFISERSGS---PRIYQTRPGSSK   80 (642)
Q Consensus         4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~---~~l~~~~~~g~~   80 (642)
                      |++|||+      .++|||++++.|     +++++||.+.+.+..|+|| |||++|||+..+++.   .+||+++..+..
T Consensus        12 G~~v~f~------~~~dl~~~d~~~-----g~~~~Lt~~~~~~~~p~~S-PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2          12 GDRIIFV------CCDDLWEHDLKS-----GSTRKIVSNLGVINNARFF-PDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             TTEEEEE------ETTEEEEEETTT-----CCEEEEECSSSEEEEEEEC-TTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             CCEEEEE------eCCcEEEEECCC-----CCEEEEecCCCcccCEEEC-CCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            7899999      778999999999     9999999999999999999 999999999877654   469999776655


Q ss_pred             ccccCCCCCCc-----ccccccc--CCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcE
Q 039497           81 TELLPSIPCSL-----FHDRPVA--RNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKF  153 (642)
Q Consensus        81 ~~~~~~~~~~~-----~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~  153 (642)
                      ..+++......     ....+.+  +++.|+|+......    .....++.++..++..+.+....   ..+.+++||+.
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  152 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF----SSMTCLYRVENDGINFVPLNLGP---ATHILFADGRR  152 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSS----TTCCEEEEEEGGGTEEEECCSCS---CSEEEEETTEE
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCC----ccceeeeeecCCCceeEEecCCc---cceeeecCCCe
Confidence            55554332111     1112233  77788887654422    11225778888888877766543   33678888888


Q ss_pred             EEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccC
Q 039497          154 IAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGF  231 (642)
Q Consensus       154 la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~  231 (642)
                      +++..........................+....++....  ..+.|+++ .+++.. ...+..+||.++++++      
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~~d~~g~------  224 (281)
T d1k32a2         153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFIT-DIDGFGQIYSTDLDGK------  224 (281)
T ss_dssp             EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEE-CTTSSCEEEEEETTSC------
T ss_pred             EEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecc-ccceec-ccccccceEEEeCCCC------
Confidence            8876554332222222223344455555555555554333  35677776 445554 5567789999999998      


Q ss_pred             CccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee
Q 039497          232 PIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT  277 (642)
Q Consensus       232 ~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~  277 (642)
                        ..++++.... .....|||||++|+|...      ..|+++|+.
T Consensus       225 --~~~~lt~~~~-~~~~~~SpDG~~I~f~~~------~~l~~~d~~  261 (281)
T d1k32a2         225 --DLRKHTSFTD-YYPRHLNTDGRRILFSKG------GSIYIFNPD  261 (281)
T ss_dssp             --SCEECCCCCS-SCEEEEEESSSCEEEEET------TEEEEECTT
T ss_pred             --ceEEeecCCC-cccccCcCCCCEEEEEeC------CEEEEEECC
Confidence              6788877642 233568999999999532      268888873

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=3.6e-16  Score=153.82  Aligned_cols=279  Identities=11%  Similarity=0.058  Sum_probs=180.5

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecCCCceEEE
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQADDGWWSIF  218 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~~g~~~l~  218 (642)
                      ....+++|+|+.||+...             ..+++|++.+++..++...+..   .++|+|||+++++. ..+|...||
T Consensus        20 ~~~~a~~~~g~~l~~~~~-------------~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg-~~dg~i~iw   85 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCNG-------------TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG-DVHGNVRIW   85 (311)
T ss_dssp             CCCCEECTTSSEEEEEET-------------TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEE
T ss_pred             eEEEEEcCCCCEEEEEeC-------------CEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEecc-ccCceEeee
Confidence            345789999999999853             2589999999887777654432   45899999988887 567866666


Q ss_pred             EEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEE
Q 039497          219 RVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGY  298 (642)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~  298 (642)
                      .+......       ....+..+...+..++|+|||++|+.+....   ...+.+|++......                
T Consensus        86 d~~~~~~~-------~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~---~~~~~v~~~~~~~~~----------------  139 (311)
T d1nr0a1          86 DTTQTTHI-------LKTTIPVFSGPVKDISWDSESKRIAAVGEGR---ERFGHVFLFDTGTSN----------------  139 (311)
T ss_dssp             ESSSTTCC-------EEEEEECSSSCEEEEEECTTSCEEEEEECCS---SCSEEEEETTTCCBC----------------
T ss_pred             eeeccccc-------cccccccccCccccccccccccccccccccc---ccccccccccccccc----------------
Confidence            54433321       1223444555677889999999888865322   224566665321100                


Q ss_pred             EEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCce
Q 039497          299 HRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAF  376 (642)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~  376 (642)
                                       ..+......+       ....|+|+|+.++....  ....|.++|+.+++......  ...+.
T Consensus       140 -----------------~~l~~h~~~v-------~~v~~~~~~~~~l~sgs--~d~~i~i~d~~~~~~~~~~~~~~~~i~  193 (311)
T d1nr0a1         140 -----------------GNLTGQARAM-------NSVDFKPSRPFRIISGS--DDNTVAIFEGPPFKFKSTFGEHTKFVH  193 (311)
T ss_dssp             -----------------BCCCCCSSCE-------EEEEECSSSSCEEEEEE--TTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred             -----------------cccccccccc-------ccccccccceeeecccc--ccccccccccccccccccccccccccc
Confidence                             0011111111       23578999986544332  23568888998876555444  45678


Q ss_pred             eeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc-------ccCCCCccCcEECCCCCe
Q 039497          377 YNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT-------KEETGNNAFPSCSPDGKF  449 (642)
Q Consensus       377 ~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~SpDg~~  449 (642)
                      .+.|+|+++.|+....       ++.+.+|++..        +.     ....+.       .+. ..+..++|+|||++
T Consensus       194 ~v~~~p~~~~l~~~~~-------d~~v~~~d~~~--------~~-----~~~~~~~~~~~~~~h~-~~V~~~~~s~~~~~  252 (311)
T d1nr0a1         194 SVRYNPDGSLFASTGG-------DGTIVLYNGVD--------GT-----KTGVFEDDSLKNVAHS-GSVFGLTWSPDGTK  252 (311)
T ss_dssp             EEEECTTSSEEEEEET-------TSCEEEEETTT--------CC-----EEEECBCTTSSSCSSS-SCEEEEEECTTSSE
T ss_pred             ccccCccccccccccc-------ccccccccccc--------cc-----cccccccccccccccc-ccccccccCCCCCE
Confidence            9999999999888763       67889998754        11     222221       122 45677899999999


Q ss_pred             EEEEeCCCCceeEEEEECCCCccccceeeCCCCCC-cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          450 LVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       450 l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~-~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      |+..+.   +..|++||+.+++.   ++.+..+.. ......+.++++.|+..+.++.        |.+||++
T Consensus       253 l~tgs~---Dg~v~iwd~~t~~~---~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~--------i~~wd~d  311 (311)
T d1nr0a1         253 IASASA---DKTIKIWNVATLKV---EKTIPVGTRIEDQQLGIIWTKQALVSISANGF--------INFVNPE  311 (311)
T ss_dssp             EEEEET---TSEEEEEETTTTEE---EEEEECCSSGGGCEEEEEECSSCEEEEETTCC--------EEEEETT
T ss_pred             EEEEeC---CCeEEEEECCCCcE---EEEEECCCCccceEEEEEecCCEEEEEECCCE--------EEEEeCC
Confidence            987663   23799999999986   555654432 2223456666777887777664        8898874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1e-14  Score=144.23  Aligned_cols=303  Identities=11%  Similarity=0.130  Sum_probs=170.6

Q ss_pred             EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497          204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH  283 (642)
Q Consensus       204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~  283 (642)
                      .+|+....++...||.++..++.       ...+....+..+..++|||||++|+++....    ..|.+|++....   
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l-------~~~~~~~~~~~v~~la~spDG~~L~v~~~~d----~~i~~~~i~~~~---   70 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGAL-------TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE----FRVLAYRIAPDD---   70 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCE-------EEEEEEECSSCCCCEEECTTSSEEEEEETTT----TEEEEEEECTTT---
T ss_pred             EEEEECCCCCcEEEEEEcCCCCe-------EEEEEEcCCCCEeEEEEeCCCCEEEEEECCC----CeEEEEEEeCCC---
Confidence            45555466777777777755432       2223334455678899999999997754322    267777762211   


Q ss_pred             ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497          284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG  363 (642)
Q Consensus       284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~  363 (642)
                                ..+.+...                        .........+.|+|||++|+.....  ...+.+++.+.
T Consensus        71 ----------~~~~~~~~------------------------~~~~~~p~~l~~spDg~~l~v~~~~--~~~v~~~~~~~  114 (333)
T d1ri6a_          71 ----------GALTFAAE------------------------SALPGSLTHISTDHQGQFVFVGSYN--AGNVSVTRLED  114 (333)
T ss_dssp             ----------CCEEEEEE------------------------EECSSCCSEEEECTTSSEEEEEETT--TTEEEEEEEET
T ss_pred             ----------CcEEEeee------------------------cccCCCceEEEEcCCCCEEeecccC--CCceeeecccc
Confidence                      10111000                        0001122356899999998887643  34455555544


Q ss_pred             CCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCcc
Q 039497          364 SKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNA  439 (642)
Q Consensus       364 ~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  439 (642)
                      ........    ...+..+.++||+++++....      ....+.+|+...  .      ....................
T Consensus       115 ~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~------~~~~i~~~~~~~--~------~~~~~~~~~~~~~~~g~~p~  180 (333)
T d1ri6a_         115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL------KQDRICLFTVSD--D------GHLVAQDPAEVTTVEGAGPR  180 (333)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG------GGTEEEEEEECT--T------SCEEEEEEEEEECSTTCCEE
T ss_pred             ccceecccccCCCccceEEEeeecceeeecccc------ccceeeEEEecc--C------CcceeeeceeeeeecCCCcc
Confidence            44333222    445778899999999988874      355677777644  1      11000011111111112345


Q ss_pred             CcEECCCCCeEEEEeCCCCceeEEEEECCCCccc--cceeeCCC---CCCcccceeEecCCCEEEEEecCCCCCCCCcee
Q 039497          440 FPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN--GDIRQLTD---GPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFS  514 (642)
Q Consensus       440 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--~~~~~l~~---~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~  514 (642)
                      .++|++++++++......+...++.++.......  .....+..   .......+.+++||++++......     +...
T Consensus       181 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~-----~~~~  255 (333)
T d1ri6a_         181 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----SLIT  255 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----TEEE
T ss_pred             EEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC-----CeEE
Confidence            6899999999888776555445555444433210  00011111   112234568999999888777654     3455


Q ss_pred             EEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceee
Q 039497          515 LYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR  594 (642)
Q Consensus       515 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  594 (642)
                      +|..+.++...+.........       .+..++|||||++|+++..+.+..              .||.+|..++.+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~-------~p~~~a~spDGk~l~va~~~~~~v--------------~v~~id~~tG~l~~  314 (333)
T d1ri6a_         256 VFSVSEDGSVLSKEGFQPTET-------QPRGFNVDHSGKYLIAAGQKSHHI--------------SVYEIVGEQGLLHE  314 (333)
T ss_dssp             EEEECTTSCCEEEEEEEECSS-------SCCCEEECTTSSEEEEECTTTCEE--------------EEEEEETTTTEEEE
T ss_pred             EEEEcCCCCEEEEEEEeCCCC-------CeeEEEEeCCCCEEEEEECCCCeE--------------EEEEEECCCCcEEE
Confidence            666665555444333222222       456799999999988765444322              67777888877665


Q ss_pred             cc
Q 039497          595 LT  596 (642)
Q Consensus       595 lt  596 (642)
                      +.
T Consensus       315 ~~  316 (333)
T d1ri6a_         315 KG  316 (333)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.4e-15  Score=146.88  Aligned_cols=271  Identities=13%  Similarity=0.010  Sum_probs=178.7

Q ss_pred             cceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecCC
Q 039497          234 APTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGES  305 (642)
Q Consensus       234 ~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~~  305 (642)
                      ....|.+|...+..++|+|+|++|+.+..++     .|.+||+..        .+...+....|+|++..++........
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg-----~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~   83 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI   83 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccc
Confidence            3455677777888999999999988865544     899999832        344556678899999998887544331


Q ss_pred             CCCCcccceEeeccCCCceeEEe--eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeee
Q 039497          306 TEGQSTIPHLEPVASPVKELRML--RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWS  381 (642)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~s  381 (642)
                            . . .............  ........++|+++.++....   ...+.++++..++......  ...+..+.|+
T Consensus        84 ------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (317)
T d1vyhc1          84 ------K-L-WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR---DKTIKMWEVQTGYCVKTFTGHREWVRMVRPN  152 (317)
T ss_dssp             ------C-E-EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             ------c-c-ccccccccccccccccccceeeeccCCCceEEeecc---CcceeEeecccceeeeEEccCCCcceeeecc
Confidence                  1 1 1111110000000  011134578999998887654   3677888988876554433  5567788999


Q ss_pred             cCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC---------------
Q 039497          382 PTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD---------------  446 (642)
Q Consensus       382 pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD---------------  446 (642)
                      |+++.|+..+.       ++.+.+|++..        ..     ....+.... ..+..+.|+|+               
T Consensus       153 ~~~~~l~~~~~-------d~~v~~~~~~~--------~~-----~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~  211 (317)
T d1vyhc1         153 QDGTLIASCSN-------DQTVRVWVVAT--------KE-----CKAELREHR-HVVECISWAPESSYSSISEATGSETK  211 (317)
T ss_dssp             TTSSEEEEEET-------TSCEEEEETTT--------CC-----EEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred             cCCCEEEEEeC-------CCeEEEEeecc--------ce-----eeEEEecCC-CCceEEEEeeccccceeeccccceee
Confidence            99999887764       66777777643        11     223333222 33333444443               


Q ss_pred             -----CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          447 -----GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       447 -----g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                           +..++..+.   +..|.+|+..+++.   +..+..+...+..+.|+|+|++|+..+.++.        |.+||+.
T Consensus       212 ~~~~~~~~~~~~~~---d~~i~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~--------i~iwd~~  277 (317)
T d1vyhc1         212 KSGKPGPFLLSGSR---DKTIKMWDVSTGMC---LMTLVGHDNWVRGVLFHSGGKFILSCADDKT--------LRVWDYK  277 (317)
T ss_dssp             -----CCEEEEEET---TSEEEEEETTTTEE---EEEEECCSSCEEEEEECSSSSCEEEEETTTE--------EEEECCT
T ss_pred             eeccCCceeEeccC---CCEEEEEECCCCcE---EEEEeCCCCCEEEEEECCCCCEEEEEECCCe--------EEEEECC
Confidence                 344444442   34789999998886   6667666677788999999999988877654        9999998


Q ss_pred             CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       522 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      +++...... .+..       .+..++|+||+++|+..+.++
T Consensus       278 ~~~~~~~~~-~h~~-------~V~~~~~s~~~~~l~s~s~Dg  311 (317)
T d1vyhc1         278 NKRCMKTLN-AHEH-------FVTSLDFHKTAPYVVTGSVDQ  311 (317)
T ss_dssp             TSCCCEEEE-CCSS-------CEEEEEECSSSSCEEEEETTS
T ss_pred             CCcEEEEEc-CCCC-------CEEEEEEcCCCCEEEEEeCCC
Confidence            776544333 3344       678899999999998777654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.69  E-value=4.6e-15  Score=144.61  Aligned_cols=282  Identities=15%  Similarity=0.048  Sum_probs=171.0

Q ss_pred             cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeec-CCC---cceEeeCCeEEEEEec
Q 039497          135 LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCE-RGG---WPTWSGDSTIYFHRQA  210 (642)
Q Consensus       135 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~~---~~~wspdg~~~~~~~~  210 (642)
                      +..|.......+|||||++||..+.+.            .|.+|++.+++..+.... +..   .++|+|+|+++...  
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg------------~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~--   73 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEG------------HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS--   73 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTS------------CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE--
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCC------------eEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeeccc--
Confidence            444555567789999999999887665            689999999886665432 222   35899999877665  


Q ss_pred             CCCceEEEEEecCCCcccccCCcccee-eCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCee
Q 039497          211 DDGWWSIFRVSFPENLEFLGFPIAPTR-VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFV  289 (642)
Q Consensus       211 ~~g~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  289 (642)
                      .++  .+..++......     ..... .......+..++++|||+.++....      ..+.+|+...           
T Consensus        74 ~d~--~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~------~~i~~~~~~~-----------  129 (299)
T d1nr0a2          74 WDD--HLKVVPAGGSGV-----DSSKAVANKLSSQPLGLAVSADGDIAVAACY------KHIAIYSHGK-----------  129 (299)
T ss_dssp             TTT--EEEEECSSSSSS-----CTTSCCEEECSSCEEEEEECTTSSCEEEEES------SEEEEEETTE-----------
T ss_pred             cee--eEEEeccCCccc-----ccccccccccccccccccccccccccccccc------cccccccccc-----------
Confidence            356  444444443210     00111 1112234455678888886655321      1455554200           


Q ss_pred             cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE
Q 039497          290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL  369 (642)
Q Consensus       290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l  369 (642)
                            +                 ....          .........|+|+++.|+....   ...|.++|+.+++...+
T Consensus       130 ------~-----------------~~~~----------~~~~~~~~~~s~~~~~l~~g~~---dg~i~~~d~~~~~~~~~  173 (299)
T d1nr0a2         130 ------L-----------------TEVP----------ISYNSSCVALSNDKQFVAVGGQ---DSKVHVYKLSGASVSEV  173 (299)
T ss_dssp             ------E-----------------EEEE----------CSSCEEEEEECTTSCEEEEEET---TSEEEEEEEETTEEEEE
T ss_pred             ------c-----------------cccc----------cccccccccccccccccccccc---ccccccccccccccccc
Confidence                  0                 0000          0011123578999998887654   36788888877765443


Q ss_pred             ee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC
Q 039497          370 IK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD  446 (642)
Q Consensus       370 ~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD  446 (642)
                      ..   ...+..+.|+|+++.|+..+.       ++.+.+|++..        +. .+ .....+..+. ..+..++|+|+
T Consensus       174 ~~~~~~~~i~~~~~~~~~~~l~~~~~-------d~~i~~~~~~~--------~~-~~-~~~~~~~~h~-~~v~~l~~s~~  235 (299)
T d1nr0a2         174 KTIVHPAEITSVAFSNNGAFLVATDQ-------SRKVIPYSVAN--------NF-EL-AHTNSWTFHT-AKVACVSWSPD  235 (299)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEET-------TSCEEEEEGGG--------TT-EE-SCCCCCCCCS-SCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccc-------ccccccccccc--------cc-cc-cccccccccc-ccccccccccc
Confidence            32   566889999999999888764       67889998754        11 00 0122223333 56777899999


Q ss_pred             CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeC
Q 039497          447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKP  520 (642)
Q Consensus       447 g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~  520 (642)
                      |++|+..+.+   ..|++||+.+++. ........+........+++++++|+..+.++.        |.+||+
T Consensus       236 ~~~l~sgs~d---g~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~--------i~iWdl  297 (299)
T d1nr0a2         236 NVRLATGSLD---NSVIVWNMNKPSD-HPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN--------IKFWNV  297 (299)
T ss_dssp             SSEEEEEETT---SCEEEEETTCTTS-CCEEETTSSTTSCEEEEEEEETTEEEEEETTSC--------EEEEEC
T ss_pred             ccceEEEcCC---CEEEEEECCCCCc-ceEEEecCCCCCcEEEEEECCCCEEEEEeCCCE--------EEEEec
Confidence            9999887743   3799999987653 001222222222223345567788888776654        888887

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=2.7e-14  Score=138.75  Aligned_cols=276  Identities=14%  Similarity=0.163  Sum_probs=177.0

Q ss_pred             EEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCc
Q 039497          204 IYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFH  283 (642)
Q Consensus       204 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~  283 (642)
                      ++|+....++  .|..+|+.+++       ....+. .+.....+++||||++|+++....+    .|.+||+....   
T Consensus         3 ~~yV~~~~~~--~v~v~D~~t~~-------~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~----~i~v~d~~t~~---   65 (301)
T d1l0qa2           3 FAYIANSESD--NISVIDVTSNK-------VTATIP-VGSNPMGAVISPDGTKVYVANAHSN----DVSIIDTATNN---   65 (301)
T ss_dssp             EEEEEETTTT--EEEEEETTTTE-------EEEEEE-CSSSEEEEEECTTSSEEEEEEGGGT----EEEEEETTTTE---
T ss_pred             EEEEEECCCC--EEEEEECCCCe-------EEEEEE-CCCCceEEEEeCCCCEEEEEECCCC----EEEEEECCCCc---
Confidence            4555545666  57778888873       233333 3334567899999999987654333    78888873211   


Q ss_pred             ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCC
Q 039497          284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDG  363 (642)
Q Consensus       284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~  363 (642)
                                 .+...                 ..  .        .......++++|+.+++...  ....+.+++..+
T Consensus        66 -----------~~~~~-----------------~~--~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  105 (301)
T d1l0qa2          66 -----------VIATV-----------------PA--G--------SSPQGVAVSPDGKQVYVTNM--ASSTLSVIDTTS  105 (301)
T ss_dssp             -----------EEEEE-----------------EC--S--------SSEEEEEECTTSSEEEEEET--TTTEEEEEETTT
T ss_pred             -----------eeeee-----------------ec--c--------cccccccccccccccccccc--ccceeeeccccc
Confidence                       11000                 00  0        01124578999998877653  345677888888


Q ss_pred             CCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE
Q 039497          364 SKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS  442 (642)
Q Consensus       364 ~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  442 (642)
                      ++...... ........|+|||+.+++...      .+..+.++....         +.    ....+...  .....+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~------~~~~~~~~~~~~---------~~----~~~~~~~~--~~~~~~~  164 (301)
T d1l0qa2         106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNN------GDKTVSVINTVT---------KA----VINTVSVG--RSPKGIA  164 (301)
T ss_dssp             TEEEEEEECSSSEEEEEECTTSSEEEEEET------TTTEEEEEETTT---------TE----EEEEEECC--SSEEEEE
T ss_pred             ceeeeeccccccceEEEeecCCCeeeeeec------cccceeeeeccc---------cc----eeeecccC--CCceEEE
Confidence            76555444 556778899999999988874      245566655533         10    22222222  3456789


Q ss_pred             ECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCC
Q 039497          443 CSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       443 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~  522 (642)
                      ++||+++++......  ..+++++....+.    ............+.|+++|+.+++...+.     ....|++||+.+
T Consensus       165 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~v~~~~~-----~~~~v~v~D~~t  233 (301)
T d1l0qa2         165 VTPDGTKVYVANFDS--MSISVIDTVTNSV----IDTVKVEAAPSGIAVNPEGTKAYVTNVDK-----YFNTVSMIDTGT  233 (301)
T ss_dssp             ECTTSSEEEEEETTT--TEEEEEETTTTEE----EEEEECSSEEEEEEECTTSSEEEEEEECS-----SCCEEEEEETTT
T ss_pred             eeccccceeeecccc--cccccccccceee----eecccccCCcceeeccccccccccccccc-----eeeeeeeeecCC
Confidence            999999998887543  3566777766553    33333334456789999999988776543     335699999988


Q ss_pred             CceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCcee
Q 039497          523 SGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLR  593 (642)
Q Consensus       523 ~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  593 (642)
                      ++.......+  .       .+..++|||||++|+++....+                .|.+||+.++++.
T Consensus       234 ~~~~~~~~~~--~-------~~~~va~spdg~~l~va~~~~~----------------~i~v~D~~t~~~~  279 (301)
T d1l0qa2         234 NKITARIPVG--P-------DPAGIAVTPDGKKVYVALSFCN----------------TVSVIDTATNTIT  279 (301)
T ss_dssp             TEEEEEEECC--S-------SEEEEEECTTSSEEEEEETTTT----------------EEEEEETTTTEEE
T ss_pred             CeEEEEEcCC--C-------CEEEEEEeCCCCEEEEEECCCC----------------eEEEEECCCCeEE
Confidence            7765433322  2       4578999999999877654432                7999999887643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.68  E-value=1e-14  Score=142.03  Aligned_cols=270  Identities=14%  Similarity=0.046  Sum_probs=167.9

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec---------CCCCcccCCeecCCCCEEEEEEeecCCC
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL---------NPNFHHYNPFVSANSEFIGYHRFRGEST  306 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~~spDg~~l~~~~~~~~~~  306 (642)
                      +.+.+|...+..++|||||++|+....++     .|.+||+..         .+...+....|+|+|+.++.. .++.  
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~-~d~~--   77 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEG-----HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS-WDDH--   77 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE-TTTE--
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeeccc-ceee--
Confidence            45566777788899999999998865444     799999832         233445677899999754432 2222  


Q ss_pred             CCCcccceEeeccCC--CceeEEe-eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecC
Q 039497          307 EGQSTIPHLEPVASP--VKELRML-RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPT  383 (642)
Q Consensus       307 ~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spd  383 (642)
                          ...|.......  ....... ........++|+|+.++....    ..+.+++..  +...+........+.|+||
T Consensus        78 ----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~----~~i~~~~~~--~~~~~~~~~~~~~~~~s~~  147 (299)
T d1nr0a2          78 ----LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY----KHIAIYSHG--KLTEVPISYNSSCVALSND  147 (299)
T ss_dssp             ----EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES----SEEEEEETT--EEEEEECSSCEEEEEECTT
T ss_pred             ----EEEeccCCcccccccccccccccccccccccccccccccccc----ccccccccc--ccccccccccccccccccc
Confidence                12221111100  0111000 111134678999997776543    456677632  3333333556778899999


Q ss_pred             CCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceE--EccccCCCCccCcEECCCCCeEEEEeCCCCcee
Q 039497          384 EKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVK--ILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKN  461 (642)
Q Consensus       384 g~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~  461 (642)
                      ++.|+....       ++.+.+|++..         +     ...  ....+. ..+..++|+|++++|+..+.   ...
T Consensus       148 ~~~l~~g~~-------dg~i~~~d~~~---------~-----~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~---d~~  202 (299)
T d1nr0a2         148 KQFVAVGGQ-------DSKVHVYKLSG---------A-----SVSEVKTIVHP-AEITSVAFSNNGAFLVATDQ---SRK  202 (299)
T ss_dssp             SCEEEEEET-------TSEEEEEEEET---------T-----EEEEEEEEECS-SCEEEEEECTTSSEEEEEET---TSC
T ss_pred             ccccccccc-------ccccccccccc---------c-----ccccccccccc-cccccccccccccccccccc---ccc
Confidence            999888764       68999999865         1     222  222333 56778999999999887764   337


Q ss_pred             EEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC-CCCCCCcc
Q 039497          462 LFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG-PEGSGDVD  540 (642)
Q Consensus       462 l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~  540 (642)
                      |++|++.++........+..+...+..++|+|+|++|+..+.++.        |++||+..+....+.... ...     
T Consensus       203 i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~--------i~iwd~~~~~~~~~~~~~~~~~-----  269 (299)
T d1nr0a2         203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS--------VIVWNMNKPSDHPIIIKGAHAM-----  269 (299)
T ss_dssp             EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC--------EEEEETTCTTSCCEEETTSSTT-----
T ss_pred             cccccccccccccccccccccccccccccccccccceEEEcCCCE--------EEEEECCCCCcceEEEecCCCC-----
Confidence            999999876641111223334456777899999999998887664        999999876544333222 111     


Q ss_pred             cccccceEEcCCCCEEEEEEecC
Q 039497          541 RERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       541 ~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                       ..+. ..+++++++|+..+.++
T Consensus       270 -~~v~-~~~~~~~~~l~s~s~D~  290 (299)
T d1nr0a2         270 -SSVN-SVIWLNETTIVSAGQDS  290 (299)
T ss_dssp             -SCEE-EEEEEETTEEEEEETTS
T ss_pred             -CcEE-EEEECCCCEEEEEeCCC
Confidence             0233 34557788888776554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=2.2e-14  Score=145.20  Aligned_cols=290  Identities=12%  Similarity=0.119  Sum_probs=179.0

Q ss_pred             cCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC------------------C---Cc
Q 039497          137 PYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER------------------G---GW  195 (642)
Q Consensus       137 ~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~------------------~---~~  195 (642)
                      .+.....+.+|||||++||...+ .            .|.+|++.+++........                  .   ..
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~d-~------------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  126 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGCN-K------------TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS  126 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECB-S------------CEEEEETTTCCEEEEECC-----------------CCCCBEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeC-C------------eEEEEEecccceEeeecccccccccccccccccccCCCCCEEE
Confidence            35566788999999999998653 2            5889998887654332211                  0   12


Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      ++|+|||+++++. ..+|...+|  +...+.       ....+..+...+..+.+++++..++.....+     .+.+||
T Consensus       127 l~~s~~~~~l~s~-~~dg~v~i~--~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-----~i~~~d  191 (388)
T d1erja_         127 VCFSPDGKFLATG-AEDRLIRIW--DIENRK-------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDR-----TVRIWD  191 (388)
T ss_dssp             EEECTTSSEEEEE-ETTSCEEEE--ETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----EEEEEE
T ss_pred             EEECCCCCcceec-ccccccccc--cccccc-------cccccccccccccccccccccccccccccce-----eeeeee
Confidence            5899999988887 567755554  555552       3444555555677788999999888755443     778887


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCcee
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAG  355 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  355 (642)
                      +....               ....                .....  ....       ...+.++++.|+....   ...
T Consensus       192 ~~~~~---------------~~~~----------------~~~~~--~~~~-------~~~~~~~~~~l~~~~~---d~~  228 (388)
T d1erja_         192 LRTGQ---------------CSLT----------------LSIED--GVTT-------VAVSPGDGKYIAAGSL---DRA  228 (388)
T ss_dssp             TTTTE---------------EEEE----------------EECSS--CEEE-------EEECSTTCCEEEEEET---TSC
T ss_pred             ccccc---------------cccc----------------ccccc--cccc-------ccccCCCCCeEEEEcC---CCe
Confidence            62110               0000                00000  0000       1123457887776553   356


Q ss_pred             EEEEECCCCCeeEEee---------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccc
Q 039497          356 IKIAKSDGSKRWTLIK---------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCD  426 (642)
Q Consensus       356 l~~~d~~~~~~~~l~~---------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  426 (642)
                      |.+++...+.......         ...+..+.|+|+++.|+..+.       ++.+.+|++............. ....
T Consensus       229 i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~-~~~~  300 (388)
T d1erja_         229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-------DRSVKLWNLQNANNKSDSKTPN-SGTC  300 (388)
T ss_dssp             EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET-------TSEEEEEEC----------------CE
T ss_pred             EEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC-------CCcEEEEeccCCcccccccccc-ccce
Confidence            8888888776443321         345778999999999987764       6889999886510000000000 0001


Q ss_pred             eEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce------eEecCCCEEEE
Q 039497          427 VKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP------SWSPKGDLIAF  500 (642)
Q Consensus       427 ~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~------~~spdG~~l~~  500 (642)
                      ......+. ..+..++|+|||++|+..+.+   ..|++||+.+++.   +..+..+...+..+      .|+|||++|+.
T Consensus       301 ~~~~~~~~-~~v~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~---~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s  373 (388)
T d1erja_         301 EVTYIGHK-DFVLSVATTQNDEYILSGSKD---RGVLFWDKKSGNP---LLMLQGHRNSVISVAVANGSSLGPEYNVFAT  373 (388)
T ss_dssp             EEEEECCS-SCEEEEEECGGGCEEEEEETT---SEEEEEETTTCCE---EEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             eeeccccc-ceEEEEEECCCCCEEEEEeCC---CEEEEEECCCCcE---EEEEeCCCCCEEEEEEecCcccCCCCCEEEE
Confidence            11222233 466778999999999877643   3799999999986   66676665555443      47889998888


Q ss_pred             EecCCCCCCCCceeEEEEeC
Q 039497          501 SSNRHNPDNVEAFSLYVIKP  520 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l~~~d~  520 (642)
                      .+.++.        |.+|++
T Consensus       374 ~s~Dg~--------I~iW~~  385 (388)
T d1erja_         374 GSGDCK--------ARIWKY  385 (388)
T ss_dssp             EETTSE--------EEEEEE
T ss_pred             EeCCCE--------EEEEee
Confidence            777653        888886

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.4e-14  Score=139.63  Aligned_cols=282  Identities=13%  Similarity=0.089  Sum_probs=182.0

Q ss_pred             EecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEe
Q 039497          133 TRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQ  209 (642)
Q Consensus       133 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~  209 (642)
                      ..|..+.......+|||||++||.++.+.            .|.+|++.+++..+....+..   .+.|+|++.+++.. 
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg------------~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~-   77 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDA------------TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-   77 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSS------------CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEE-
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCC------------eEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccc-
Confidence            44666666667789999999999987666            699999999886665543332   45999999887776 


Q ss_pred             cCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCee
Q 039497          210 ADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFV  289 (642)
Q Consensus       210 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  289 (642)
                      ..++...++  +.....       ....+..+........++|+++.++....+.     .+.+||+...          
T Consensus        78 ~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~~~~~~~~~~----------  133 (317)
T d1vyhc1          78 SADMTIKLW--DFQGFE-------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDK-----TIKMWEVQTG----------  133 (317)
T ss_dssp             ETTSCCCEE--ETTSSC-------EEECCCCCSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTC----------
T ss_pred             ccccccccc--cccccc-------cccccccccccceeeeccCCCceEEeeccCc-----ceeEeecccc----------
Confidence            334433333  333331       2233344454566778899999888765443     6777776221          


Q ss_pred             cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE
Q 039497          290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL  369 (642)
Q Consensus       290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l  369 (642)
                          +.+...                   ......       .....|+|+++.|+....   ...|.+++...++....
T Consensus       134 ----~~~~~~-------------------~~~~~~-------~~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~  180 (317)
T d1vyhc1         134 ----YCVKTF-------------------TGHREW-------VRMVRPNQDGTLIASCSN---DQTVRVWVVATKECKAE  180 (317)
T ss_dssp             ----CEEEEE-------------------ECCSSC-------EEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEE
T ss_pred             ----eeeeEE-------------------ccCCCc-------ceeeecccCCCEEEEEeC---CCeEEEEeeccceeeEE
Confidence                111110                   000000       123478889888776553   35677778776654433


Q ss_pred             ee--cCCceeeeeecCCC--------------------EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497          370 IK--DRTAFYNSWSPTEK--------------------HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV  427 (642)
Q Consensus       370 ~~--~~~~~~~~~spdg~--------------------~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  427 (642)
                      ..  ...+..+.|+|++.                    .++..+       .++.+++|++..        +.     ..
T Consensus       181 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~i~~~~~~~--------~~-----~~  240 (317)
T d1vyhc1         181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-------RDKTIKMWDVST--------GM-----CL  240 (317)
T ss_dssp             ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-------TTSEEEEEETTT--------TE-----EE
T ss_pred             EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc-------CCCEEEEEECCC--------Cc-----EE
Confidence            22  33445555555443                    333333       367788887644        12     34


Q ss_pred             EEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCC
Q 039497          428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNP  507 (642)
Q Consensus       428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~  507 (642)
                      ..+..+. ..+..+.|+|+|++|+..+.+   ..|.+||+.+++.   +..+..+...+..++|+|||++|+..+.++. 
T Consensus       241 ~~~~~~~-~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~---~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~-  312 (317)
T d1vyhc1         241 MTLVGHD-NWVRGVLFHSGGKFILSCADD---KTLRVWDYKNKRC---MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT-  312 (317)
T ss_dssp             EEEECCS-SCEEEEEECSSSSCEEEEETT---TEEEEECCTTSCC---CEEEECCSSCEEEEEECSSSSCEEEEETTSE-
T ss_pred             EEEeCCC-CCEEEEEECCCCCEEEEEECC---CeEEEEECCCCcE---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-
Confidence            4555554 677789999999999877643   3799999998886   6777777777888999999999988877653 


Q ss_pred             CCCCceeEEEEe
Q 039497          508 DNVEAFSLYVIK  519 (642)
Q Consensus       508 ~~~~~~~l~~~d  519 (642)
                             |++||
T Consensus       313 -------i~iWd  317 (317)
T d1vyhc1         313 -------VKVWE  317 (317)
T ss_dssp             -------EEEEC
T ss_pred             -------EEEeC
Confidence                   77775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=1.5e-14  Score=145.84  Aligned_cols=230  Identities=13%  Similarity=0.145  Sum_probs=154.3

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      ...+|||||+.|++...   ...|.++++++++...+..    ...+..+.|+|++++|+.++.       +..+++|++
T Consensus        11 t~~~~s~dg~~la~~~~---~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~-------D~~i~vWd~   80 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPN---NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-------DRNAYVWTL   80 (371)
T ss_dssp             CEEEECTTSSEEEEECS---SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-------TSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEeC---CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC-------CCeEEEEee
Confidence            35699999999988653   3568888888776444332    467899999999999988763       689999999


Q ss_pred             EeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccc
Q 039497          409 SFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM  488 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~  488 (642)
                      ..  .      ..+   ....+..+. ..+..+.|+||+++|+..+. ++...+|.++...... ........+...+..
T Consensus        81 ~~--~------~~~---~~~~~~~~~-~~v~~i~~~p~~~~l~~~s~-d~~i~i~~~~~~~~~~-~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          81 KG--R------TWK---PTLVILRIN-RAARCVRWAPNEKKFAVGSG-SRVISICYFEQENDWW-VCKHIKKPIRSTVLS  146 (371)
T ss_dssp             ET--T------EEE---EEEECCCCS-SCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTTEE-EEEEECTTCCSCEEE
T ss_pred             cc--c------ccc---ccccccccc-ccccccccccccccceeecc-cCcceeeeeecccccc-ccccccccccccccc
Confidence            75  1      100   122233333 56778899999999987763 3444555555443321 001112234455677


Q ss_pred             eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE----------------ee-ecCCCCCCCcccccccceEEcC
Q 039497          489 PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR----------------IH-VAGPEGSGDVDRERINHVCFSA  551 (642)
Q Consensus       489 ~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----------------l~-~~~~~~~~~~~~~~~~~~~~S~  551 (642)
                      ++|+|||++|+..+.++.        |.+|++.......                +. ...+..       .+..++|+|
T Consensus       147 v~~~p~~~~l~s~s~D~~--------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~s~  211 (371)
T d1k8kc_         147 LDWHPNSVLLAAGSCDFK--------CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-------WVHGVCFSA  211 (371)
T ss_dssp             EEECTTSSEEEEEETTSC--------EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-------CEEEEEECS
T ss_pred             ccccccccceeccccCcE--------EEEEeeccCccccccccccccccccceeeeeeccCccC-------cEEEEEeec
Confidence            899999999988877664        8888876543211                11 111122       467889999


Q ss_pred             CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCCcEEecCCceEEeec
Q 039497          552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       552 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                      ||++|+..+.++                 .|.+||+..+. +..+..+...+.++.|+||++++++..
T Consensus       212 ~g~~l~s~~~d~-----------------~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~  262 (371)
T d1k8kc_         212 NGSRVAWVSHDS-----------------TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH  262 (371)
T ss_dssp             SSSEEEEEETTT-----------------EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET
T ss_pred             ccccccccccCC-----------------cceEEeeecccceeeeecccccceeeeecCCCCEEEEEc
Confidence            999998877654                 78888987665 455655666677899999999887643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.64  E-value=1e-13  Score=134.65  Aligned_cols=266  Identities=13%  Similarity=0.097  Sum_probs=168.1

Q ss_pred             eeEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCcccccee
Q 039497          173 TDIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAA  250 (642)
Q Consensus       173 ~~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  250 (642)
                      ..|.+||+++++..+......  ..++|+|||+.+|+....++  .|..+|..++.       ....+..+ .....+++
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~--~i~v~d~~t~~-------~~~~~~~~-~~~~~~~~   81 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSN--DVSIIDTATNN-------VIATVPAG-SSPQGVAV   81 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGT--EEEEEETTTTE-------EEEEEECS-SSEEEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCC--EEEEEECCCCc-------eeeeeecc-cccccccc
Confidence            368999999987655443222  24599999987766544455  67778888773       33333332 34556788


Q ss_pred             ecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee
Q 039497          251 FHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL  330 (642)
Q Consensus       251 SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (642)
                      ++||+++++.....    ..+.+++...              ++.+...                 .  ..        .
T Consensus        82 ~~~~~~~~~~~~~~----~~~~~~~~~~--------------~~~~~~~-----------------~--~~--------~  116 (301)
T d1l0qa2          82 SPDGKQVYVTNMAS----STLSVIDTTS--------------NTVAGTV-----------------K--TG--------K  116 (301)
T ss_dssp             CTTSSEEEEEETTT----TEEEEEETTT--------------TEEEEEE-----------------E--CS--------S
T ss_pred             cccccccccccccc----ceeeeccccc--------------ceeeeec-----------------c--cc--------c
Confidence            99999887754332    2444444311              1111110                 0  00        0


Q ss_pred             CCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEE
Q 039497          331 NGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVS  409 (642)
Q Consensus       331 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~  409 (642)
                      ......++|||+.+++...  ....+.+++..+........ ......+.++|+++.++....      +.....++...
T Consensus       117 ~~~~~~~~~dg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  188 (301)
T d1l0qa2         117 SPLGLALSPDGKKLYVTNN--GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF------DSMSISVIDTV  188 (301)
T ss_dssp             SEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET------TTTEEEEEETT
T ss_pred             cceEEEeecCCCeeeeeec--cccceeeeeccccceeeecccCCCceEEEeeccccceeeecc------ccccccccccc
Confidence            1124578999998887664  34567778888776555444 556778899999999988874      23444444332


Q ss_pred             eecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccce
Q 039497          410 FQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMP  489 (642)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~  489 (642)
                      .         .     ......... .....+.|+++|+.+++.........|+++|+.+++.   +..+..+ .....+
T Consensus       189 ~---------~-----~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~---~~~~~~~-~~~~~v  249 (301)
T d1l0qa2         189 T---------N-----SVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI---TARIPVG-PDPAGI  249 (301)
T ss_dssp             T---------T-----EEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE---EEEEECC-SSEEEE
T ss_pred             c---------e-----eeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeE---EEEEcCC-CCEEEE
Confidence            1         1     222222222 3455689999999998776554556899999999885   4555443 345778


Q ss_pred             eEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          490 SWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       490 ~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                      +|||||++|+.+....+       .|.+||+++++...
T Consensus       250 a~spdg~~l~va~~~~~-------~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         250 AVTPDGKKVYVALSFCN-------TVSVIDTATNTITA  280 (301)
T ss_dssp             EECTTSSEEEEEETTTT-------EEEEEETTTTEEEE
T ss_pred             EEeCCCCEEEEEECCCC-------eEEEEECCCCeEEE
Confidence            99999999887765432       49999999887543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.64  E-value=4.4e-14  Score=140.08  Aligned_cols=317  Identities=14%  Similarity=0.097  Sum_probs=182.1

Q ss_pred             CceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-cCC---CcceEeeCCeEEEEEecCCCceEEEE
Q 039497          144 SPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-ERG---GWPTWSGDSTIYFHRQADDGWWSIFR  219 (642)
Q Consensus       144 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~---~~~~wspdg~~~~~~~~~~g~~~l~~  219 (642)
                      .|++|++|++|++...+.            .|.+||+++++..+... +.+   ..++|+|||+.+|+....++  .|+.
T Consensus         1 g~a~~~~~~~l~~~~~~~------------~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~--~v~~   66 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPN------------NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG--DIYG   66 (346)
T ss_dssp             CCCCCTTCEEEEEEETTT------------EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTT--EEEE
T ss_pred             CccCCCCCcEEEEEcCCC------------EEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCC--cEEE
Confidence            379999999999988766            79999999997654333 333   25699999987777645555  7788


Q ss_pred             EecCCCcccccCCccceeeCCCC------CccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCC
Q 039497          220 VSFPENLEFLGFPIAPTRVTPPG------VHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANS  293 (642)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg  293 (642)
                      +|+.+++       ....+....      .....+++||||++|++.........                 ......++
T Consensus        67 ~d~~t~~-------~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~-----------------~~~~~~~~  122 (346)
T d1jmxb_          67 IDLDTCK-------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN-----------------DHYVVKPP  122 (346)
T ss_dssp             EETTTTE-------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECS-----------------SCEEECCC
T ss_pred             EeCccCe-------eeeeecccccccccCCceEEEEEecCCCEEEEEecCCccee-----------------eeeccCcc
Confidence            8888873       222222111      13456789999999887543221000                 00011111


Q ss_pred             CEEEEEEeecCCCCCCcccceEeeccCCCceeEEee--eCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee
Q 039497          294 EFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLR--LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK  371 (642)
Q Consensus       294 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~  371 (642)
                      ....+....+..                ...+....  .......++++++.++. .     ..+.++++.+++......
T Consensus       123 ~i~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~  180 (346)
T d1jmxb_         123 RLEVFSTADGLE----------------AKPVRTFPMPRQVYLMRAADDGSLYVA-G-----PDIYKMDVKTGKYTVALP  180 (346)
T ss_dssp             EEEEEEGGGGGG----------------BCCSEEEECCSSCCCEEECTTSCEEEE-S-----SSEEEECTTTCCEEEEEC
T ss_pred             eEEEEeccccee----------------eeEEEeeeccCceEEEEecCCCEEEEe-C-----CcceEEEccCCCEEEEEe
Confidence            111111011110                00111111  11123456777764443 1     457777887776554433


Q ss_pred             -cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeE
Q 039497          372 -DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFL  450 (642)
Q Consensus       372 -~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l  450 (642)
                       ........++|++..++....      ......++....                               .+.++...+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-------------------------------~~~~~~~~~  223 (346)
T d1jmxb_         181 LRNWNRKGYSAPDVLYFWPHQS------PRHEFSMLYTIA-------------------------------RFKDDKQDP  223 (346)
T ss_dssp             STTCCCTTBCCCBCCCCCCCCC------TTCEEEEEEEEE-------------------------------EC-------
T ss_pred             cCCCccceEEeccccEEEEEec------CCCceEeeeeee-------------------------------eeccCceeE
Confidence             555677889999987765542      233333333221                               001111111


Q ss_pred             EEEeCCCCceeEEEEECCCCccccceee-CCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee
Q 039497          451 VFRSGRSGHKNLFVLDAVNGEFNGDIRQ-LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       451 ~~~~~~~g~~~l~~~d~~~g~~~~~~~~-l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  529 (642)
                      +..   .....+.+++..++..   ... +...........+++++.++++...+.         |++||+.+++.....
T Consensus       224 ~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------v~v~d~~~~~~~~~~  288 (346)
T d1jmxb_         224 ATA---DLLYGYLSVDLKTGKT---HTQEFADLTELYFTGLRSPKDPNQIYGVLNR---------LAKYDLKQRKLIKAA  288 (346)
T ss_dssp             CCC---EEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECSSCTTEEEEEESE---------EEEEETTTTEEEEEE
T ss_pred             eec---cCCceEEEEECCCCce---EEEEeecccceeEEEEEeCCCCEEEEecCCe---------EEEEECCCCcEEEEE
Confidence            111   1233678889888774   222 223344556678899998888776543         899999888765544


Q ss_pred             ecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCC
Q 039497          530 VAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWN  598 (642)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~  598 (642)
                      ..+  .       .+..++|||||++|+....++                 .|.+||..+.+ +..+...
T Consensus       289 ~~~--~-------~~~~va~s~DG~~l~v~~~d~-----------------~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         289 NLD--H-------TYYCVAFDKKGDKLYLGGTFN-----------------DLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             ECS--S-------CCCEEEECSSSSCEEEESBSS-----------------EEEEEETTTTEEEEEEECS
T ss_pred             cCC--C-------CEEEEEEcCCCCEEEEEeCCC-----------------cEEEEECccCCEEEEEECC
Confidence            322  2       457899999999998776442                 79999998876 4445443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=2.1e-13  Score=134.49  Aligned_cols=265  Identities=13%  Similarity=0.082  Sum_probs=156.1

Q ss_pred             eeeEEEEEecCCCc-eeEe--ecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceee--CCCCCc
Q 039497          172 NTDIVVFQESDPNK-RVIV--CERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV--TPPGVH  244 (642)
Q Consensus       172 ~~~l~~~~~~~g~~-~~l~--~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~~  244 (642)
                      ...|.+|++..... +.+.  ...+  ..++|||||+.+|+....++...+|.++..+.        ..+..  ......
T Consensus        13 ~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~--------~~~~~~~~~~~~~   84 (333)
T d1ri6a_          13 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--------ALTFAAESALPGS   84 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC--------CEEEEEEEECSSC
T ss_pred             CCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC--------cEEEeeecccCCC
Confidence            34788999875543 3222  2222  35699999988877756678777777776654        22222  222334


Q ss_pred             cccceeecCCcEEEEEEeccCCceeeEEEEEee----------cCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccce
Q 039497          245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT----------LNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPH  314 (642)
Q Consensus       245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~  314 (642)
                      ...++|||||++|++......    .+.+++..          ...........++||++.++........      + .
T Consensus        85 p~~l~~spDg~~l~v~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~------i-~  153 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAG----NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR------I-C  153 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTT----EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE------E-E
T ss_pred             ceEEEEcCCCCEEeecccCCC----ceeeeccccccceecccccCCCccceEEEeeecceeeeccccccce------e-e
Confidence            566889999999988654332    45555551          2233445677899999998877544331      1 1


Q ss_pred             EeeccCCCcee--EE--eee-CC---CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee----------cCCce
Q 039497          315 LEPVASPVKEL--RM--LRL-NG---SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK----------DRTAF  376 (642)
Q Consensus       315 ~~~~~~~~~~~--~~--~~~-~~---~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~----------~~~~~  376 (642)
                      ...........  ..  ... .+   ....|++++..++..........++.++...........          .....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (333)
T d1ri6a_         154 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA  233 (333)
T ss_dssp             EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred             EEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccce
Confidence            11111111111  10  111 11   346789999987776654444445554444433222111          12344


Q ss_pred             eeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCC
Q 039497          377 YNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGR  456 (642)
Q Consensus       377 ~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~  456 (642)
                      .+.+++|+++++....      ....+.+|.++.  +     ++..   ......... .....++|||||++|+.+..+
T Consensus       234 ~~~~s~d~~~~~~~~~------~~~~~~~~~~~~--~-----~~~~---~~~~~~~~~-~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         234 DIHITPDGRHLYACDR------TASLITVFSVSE--D-----GSVL---SKEGFQPTE-TQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             EEEECTTSSEEEEEET------TTTEEEEEEECT--T-----SCCE---EEEEEEECS-SSCCCEEECTTSSEEEEECTT
T ss_pred             eEEEecccCceeeecc------cCCeEEEEEEcC--C-----CCEE---EEEEEeCCC-CCeeEEEEeCCCCEEEEEECC
Confidence            6789999999888774      367888888866  2     1100   111112222 356678999999998877666


Q ss_pred             CCceeEEEEECCCCcc
Q 039497          457 SGHKNLFVLDAVNGEF  472 (642)
Q Consensus       457 ~g~~~l~~~d~~~g~~  472 (642)
                      ++.-.||.+|.++|+.
T Consensus       297 ~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         297 SHHISVYEIVGEQGLL  312 (333)
T ss_dssp             TCEEEEEEEETTTTEE
T ss_pred             CCeEEEEEEECCCCcE
Confidence            6666788889888874

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=1.7e-13  Score=138.00  Aligned_cols=256  Identities=10%  Similarity=0.043  Sum_probs=155.5

Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIY  274 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~  274 (642)
                      ..+|+|||+++++. ..++...||.+  .++..     .....+..+...+..++|||+|++|+.+..++     .+++|
T Consensus        12 ~~~~s~dg~~la~~-~~~~~i~iw~~--~~~~~-----~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~-----~i~vW   78 (371)
T d1k8kc_          12 CHAWNKDRTQIAIC-PNNHEVHIYEK--SGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR-----NAYVW   78 (371)
T ss_dssp             EEEECTTSSEEEEE-CSSSEEEEEEE--ETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTS-----CEEEE
T ss_pred             EEEECCCCCEEEEE-eCCCEEEEEEC--CCCCE-----EEEEEecCCCCCEEEEEECCCCCEEEEEECCC-----eEEEE
Confidence            36999999888877 45675555554  44310     02344556666788899999999998865443     78999


Q ss_pred             EeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCce
Q 039497          275 DLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNA  354 (642)
Q Consensus       275 d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  354 (642)
                      |+....              ..                 ....+......+       ....|+|+++.++.... ++..
T Consensus        79 d~~~~~--------------~~-----------------~~~~~~~~~~~v-------~~i~~~p~~~~l~~~s~-d~~i  119 (371)
T d1k8kc_          79 TLKGRT--------------WK-----------------PTLVILRINRAA-------RCVRWAPNEKKFAVGSG-SRVI  119 (371)
T ss_dssp             EEETTE--------------EE-----------------EEEECCCCSSCE-------EEEEECTTSSEEEEEET-TSSE
T ss_pred             eecccc--------------cc-----------------cccccccccccc-------cccccccccccceeecc-cCcc
Confidence            873211              00                 000000000111       24589999998887664 4445


Q ss_pred             eEEEEECCCCCeeEEee----cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC----Ccccc-
Q 039497          355 GIKIAKSDGSKRWTLIK----DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR----EEIPC-  425 (642)
Q Consensus       355 ~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~-  425 (642)
                      .+|.++...........    ...+..+.|+||++.|+..+.       ++.+++|++....... ....    ...+. 
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-------D~~v~v~~~~~~~~~~-~~~~~~~~~~~~~~  191 (371)
T d1k8kc_         120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-------DFKCRIFSAYIKEVEE-RPAPTPWGSKMPFG  191 (371)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET-------TSCEEEEECCCTTTSC-CCCCBTTBSCCCTT
T ss_pred             eeeeeecccccccccccccccccccccccccccccceecccc-------CcEEEEEeeccCcccc-ccccccccccccce
Confidence            56655544433222221    345778999999999987764       6788999875410000 0000    00000 


Q ss_pred             -ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecC
Q 039497          426 -DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNR  504 (642)
Q Consensus       426 -~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~  504 (642)
                       .......+. ..+..++|+|||++|+..+.+   ..|.+||+.+++.   +..+..+...+..+.|+|||+.|+...+.
T Consensus       192 ~~~~~~~~~~-~~v~~~~~s~~g~~l~s~~~d---~~i~iwd~~~~~~---~~~~~~~~~~v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         192 ELMFESSSSC-GWVHGVCFSANGSRVAWVSHD---STVCLADADKKMA---VATLASETLPLLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             CEEEECCCCS-SCEEEEEECSSSSEEEEEETT---TEEEEEEGGGTTE---EEEEECSSCCEEEEEEEETTEEEEEETTS
T ss_pred             eeeeeccCcc-CcEEEEEeecccccccccccC---CcceEEeeecccc---eeeeecccccceeeeecCCCCEEEEEcCC
Confidence             112222233 456778999999999887743   4799999998876   56666666667889999999877654332


Q ss_pred             CCCCCCCceeEEEEeCCCCc
Q 039497          505 HNPDNVEAFSLYVIKPDGSG  524 (642)
Q Consensus       505 ~~~~~~~~~~l~~~d~~~~~  524 (642)
                             ...++.++.....
T Consensus       265 -------~~~~~~~~~~~~~  277 (371)
T d1k8kc_         265 -------FPVLFTYDSAAGK  277 (371)
T ss_dssp             -------SCEEEEEETTTTE
T ss_pred             -------ceEEEEeeCCCce
Confidence                   2346666654443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1e-13  Score=140.09  Aligned_cols=226  Identities=14%  Similarity=0.138  Sum_probs=147.7

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .++|+|||++|+..+.   ...|.+++...++......  ...+..+.|++++..++..+.       ++.+.+|++.. 
T Consensus       126 ~l~~s~~~~~l~s~~~---dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-------~~~i~~~d~~~-  194 (388)
T d1erja_         126 SVCFSPDGKFLATGAE---DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-------DRTVRIWDLRT-  194 (388)
T ss_dssp             EEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEEEEETTT-
T ss_pred             EEEECCCCCcceeccc---cccccccccccccccccccccccccccccccccccccccccc-------ceeeeeeeccc-
Confidence            4689999998887654   3568888988776554443  556788999999999888764       67888888754 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-------CCCC
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-------DGPW  484 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-------~~~~  484 (642)
                              .     .................+.+|++.|+..+.+   ..|++++..++..   ...+.       .+..
T Consensus       195 --------~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~~---~~~~~~~~~~~~~h~~  255 (388)
T d1erja_         195 --------G-----QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD---RAVRVWDSETGFL---VERLDSENESGTGHKD  255 (388)
T ss_dssp             --------T-----EEEEEEECSSCEEEEEECSTTCCEEEEEETT---SCEEEEETTTCCE---EEEEC------CCCSS
T ss_pred             --------c-----ccccccccccccccccccCCCCCeEEEEcCC---CeEEEeecccCcc---ceeeccccccccCCCC
Confidence                    1     2222222221223333445588888776633   3799999988775   33332       2334


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEee-----------ecCCCCCCCcccccccceEEcCCC
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIH-----------VAGPEGSGDVDRERINHVCFSADG  553 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----------~~~~~~~~~~~~~~~~~~~~S~Dg  553 (642)
                      .+..+.|+|+|++|+..+.++.        |.+||+..+......           ...+..       .+..++|+|||
T Consensus       256 ~v~~l~~s~~~~~l~s~~~d~~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~s~~~  320 (388)
T d1erja_         256 SVYSVVFTRDGQSVVSGSLDRS--------VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-------FVLSVATTQND  320 (388)
T ss_dssp             CEEEEEECTTSSEEEEEETTSE--------EEEEEC---------------CEEEEEECCSS-------CEEEEEECGGG
T ss_pred             CEEEEEECCCCCEEEEEECCCc--------EEEEeccCCccccccccccccceeeecccccc-------eEEEEEECCCC
Confidence            5677899999999988877653        899998765432211           111222       56789999999


Q ss_pred             CEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCc-eeeccCCCCCCCC------cEEecCCceEEeecCCC
Q 039497          554 EWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTWNGYENGT------PAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~~~~~~~~------~~~s~dg~~~~~~~~~~  621 (642)
                      ++|+..+.++                 .|++||+..++ +..+..+...+..      ..|+||+++|++....+
T Consensus       321 ~~l~sg~~dg-----------------~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg  378 (388)
T d1erja_         321 EYILSGSKDR-----------------GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  378 (388)
T ss_dssp             CEEEEEETTS-----------------EEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             CEEEEEeCCC-----------------EEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCC
Confidence            9988777654                 78899988766 4556655554433      35788999998865443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=1.1e-13  Score=138.23  Aligned_cols=305  Identities=14%  Similarity=0.123  Sum_probs=178.8

Q ss_pred             ceEeeCCeEEEEEecCC--CceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEecc-----CCce
Q 039497          196 PTWSGDSTIYFHRQADD--GWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRK-----NRNF  268 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~--g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~-----~~~~  268 (642)
                      .+.+|||+.+|+.....  ...++|.+|..+++       ....+.. + ....++|||||++|+++....     +...
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~-------~~~~~~~-g-~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR-------VIGMIDG-G-FLPNPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE-------EEEEEEE-C-SSCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCc-------EEEEEEC-C-CCCceEEcCCCCEEEEEeCCCccccccCCC
Confidence            36789997666653222  23489999999883       2333332 2 233589999999998865421     1223


Q ss_pred             eeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEe
Q 039497          269 RHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNH  348 (642)
Q Consensus       269 ~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  348 (642)
                      ..|.+||+...              +.+...... .               ..  . ...........|+|||+++++..
T Consensus        78 ~~v~v~D~~t~--------------~~~~~~~~~-~---------------~~--~-~~~~~~~~~~~~s~dg~~~~v~~  124 (355)
T d2bbkh_          78 DYVEVFDPVTL--------------LPTADIELP-D---------------AP--R-FLVGTYPWMTSLTPDGKTLLFYQ  124 (355)
T ss_dssp             EEEEEECTTTC--------------CEEEEEEET-T---------------CC--C-CCBSCCGGGEEECTTSSEEEEEE
T ss_pred             CEEEEEECCCC--------------CEEEEEecC-C---------------cc--e-eecCCCCceEEEecCCCeeEEec
Confidence            46778876321              111111000 0               00  0 00001123458999999988765


Q ss_pred             cCCCceeEEEEECCCCCeeEEee---------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497          349 DFELNAGIKIAKSDGSKRWTLIK---------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN  419 (642)
Q Consensus       349 ~~~~~~~l~~~d~~~~~~~~l~~---------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  419 (642)
                      . .....+.+++..+++......         ......+.+++||+.+++....      .....+.....         
T Consensus       125 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~------~~~~~~~~~~~---------  188 (355)
T d2bbkh_         125 F-SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT------EGTPEITHTEV---------  188 (355)
T ss_dssp             C-SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCS------SSCCEEEECCC---------
T ss_pred             C-CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecC------CCeEEEEeccc---------
Confidence            4 344678888888876554333         1233456788888887766532      33333332221         


Q ss_pred             CCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-------------CCcc
Q 039497          420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-------------PWID  486 (642)
Q Consensus       420 ~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-------------~~~~  486 (642)
                      .       .  .... .....+.+++++..+++.+.   ...+++++..+++.    ..+...             +...
T Consensus       189 ~-------~--~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~  251 (355)
T d2bbkh_         189 F-------H--PEDE-FLINHPAYSQKAGRLVWPTY---TGKIHQIDLSSGDA----KFLPAVEALTEAERADGWRPGGW  251 (355)
T ss_dssp             C-------S--CTTS-CBCSCCEEETTTTEEEEEBT---TSEEEEEECTTSSC----EECCCEESSCHHHHHTTEEECSS
T ss_pred             c-------c--ceec-ceeeeccccCCCCeEEEecC---CCeEEEEecCCCcE----EEEeccCCcccceEeeeeeccce
Confidence            0       0  0111 23345677888888888763   34799999987763    333211             1122


Q ss_pred             cceeEecCCCEEEEEecCCCCC--CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          487 TMPSWSPKGDLIAFSSNRHNPD--NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      ..++++|||+.+++........  ......|+++|+.+++.......+  .       .+..++|||||+.+++.+....
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~--~-------~~~~~a~spDG~~~l~v~~~~d  322 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--H-------EIDSINVSQDEKPLLYALSTGD  322 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--E-------EECEEEECCSSSCEEEEEETTT
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC--C-------CEEEEEEcCCCCeEEEEEECCC
Confidence            4578999999988877654311  224578999999887654322211  1       4568999999997766665432


Q ss_pred             cccCCCCCCCCCCCCCcEEEEEcCCCce-eeccCCC
Q 039497          565 VMAEPVSWPNQFQPYGDLYVVKLDGSGL-RRLTWNG  599 (642)
Q Consensus       565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lt~~~  599 (642)
                                     ..|++||+.+++. ..|...+
T Consensus       323 ---------------~~i~v~D~~tg~~~~~i~~~G  343 (355)
T d2bbkh_         323 ---------------KTLYIHDAESGEELRSVNQLG  343 (355)
T ss_dssp             ---------------TEEEEEETTTCCEEEEECCCC
T ss_pred             ---------------CEEEEEECCCCCEEEEEeCcC
Confidence                           2899999987774 4555443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=1.1e-14  Score=149.76  Aligned_cols=330  Identities=9%  Similarity=-0.021  Sum_probs=182.8

Q ss_pred             eEEEEEecCCCceeEeecCC--CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCC---CCCccccc
Q 039497          174 DIVVFQESDPNKRVIVCERG--GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP---PGVHCFTP  248 (642)
Q Consensus       174 ~l~~~~~~~g~~~~l~~~~~--~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~  248 (642)
                      .|.+||.++++.........  ..++|||||+.+|+. ..+|  .+..+++.++..     ....++..   +..-+..+
T Consensus        43 ~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~-s~dg--~v~~~d~~t~~~-----~~~~~i~~~~~~~~~~~s~  114 (432)
T d1qksa2          43 QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVI-GRDG--KVNMIDLWMKEP-----TTVAEIKIGSEARSIETSK  114 (432)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEE-ETTS--EEEEEETTSSSC-----CEEEEEECCSEEEEEEECC
T ss_pred             EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEE-cCCC--CEEEEEeeCCCc-----eEEEEEecCCCCCCeEEec
Confidence            78999999998776665332  245999999988877 3467  556666665521     01122221   22245567


Q ss_pred             eeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe
Q 039497          249 AAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML  328 (642)
Q Consensus       249 ~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (642)
                      .|||||++|+++....+    .+.+||.....              .+.........            .    ......
T Consensus       115 ~~SpDG~~l~vs~~~~~----~v~i~d~~t~~--------------~~~~~~~~~~~------------~----~~~~~~  160 (432)
T d1qksa2         115 MEGWEDKYAIAGAYWPP----QYVIMDGETLE--------------PKKIQSTRGMT------------Y----DEQEYH  160 (432)
T ss_dssp             STTCTTTEEEEEEEETT----EEEEEETTTCC--------------EEEEEECCEEC------------T----TTCCEE
T ss_pred             ccCCCCCEEEEEcCCCC----eEEEEeCcccc--------------ceeeeccCCcc------------c----cceecc
Confidence            88999999877554332    78888873321              12211110000            0    000000


Q ss_pred             e-eCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEE
Q 039497          329 R-LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQ  404 (642)
Q Consensus       329 ~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  404 (642)
                      . .......+||||+.+++...  ....|++++....+...+..   ......+.|+|||++++.....      ...+.
T Consensus       161 ~~~~~~~v~~s~dg~~~~vs~~--~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~------~~~v~  232 (432)
T d1qksa2         161 PEPRVAAILASHYRPEFIVNVK--ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA------RNKLV  232 (432)
T ss_dssp             SCCCEEEEEECSSSSEEEEEET--TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG------GTEEE
T ss_pred             CCCceeEEEECCCCCEEEEEEc--cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc------cceEE
Confidence            0 00113467999998777653  35788999988776544433   5567889999999999988842      44555


Q ss_pred             EEEEEeecCCCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497          405 IARVSFQLDPSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT  480 (642)
Q Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~  480 (642)
                      +++...         +.    ....+....    ........++..|......  ..+...+..+.....       .+.
T Consensus       233 v~d~~~---------~~----~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~--~lg~~~v~~~~~~~~-------~~~  290 (432)
T d1qksa2         233 VIDTKE---------GK----LVAIEDTGGQTPHPGRGANFVHPTFGPVWATS--HMGDDSVALIGTDPE-------GHP  290 (432)
T ss_dssp             EEETTT---------TE----EEEEEECSSSSBCCTTCEEEEETTTEEEEEEE--BSSSSEEEEEECCTT-------TCT
T ss_pred             Eeeccc---------ce----EEEEeccCccccccCcccceecCCCCceeccc--ccCCceEEecccccc-------ccc
Confidence            544422         10    111111111    0112223344444333332  224446666665432       223


Q ss_pred             CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497          481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       481 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      ...+.+....++|+|..++..+....        .++|........       ..       ....+++ ||++.|+..+
T Consensus       291 ~~~~~v~~~~~~~~g~~~~~~s~p~~--------~~lw~~~~~~~~-------~~-------~~~sv~v-pDg~~la~~s  347 (432)
T d1qksa2         291 DNAWKILDSFPALGGGSLFIKTHPNS--------QYLYVDATLNPE-------AE-------ISGSVAV-FDIKAMTGDG  347 (432)
T ss_dssp             TTBTSEEEEEECSCSCCCCEECCTTC--------SEEEEECTTCSS-------HH-------HHTCEEE-EEGGGCCCSS
T ss_pred             ccccEEEEEEEcCCCCeEEEEecCCc--------cceeecccCCCC-------CC-------eeeEEEE-Eechhhcccc
Confidence            33345566788999987777766543        455544322210       00       1234454 9999888776


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497          561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      .+.                 .+-+|++..  ..+|+.+...+..++|||||++++.+
T Consensus       348 ~d~-----------------~~k~w~~~~--~~~l~~~~~~v~~~~fS~DG~~v~~S  385 (432)
T d1qksa2         348 SDP-----------------EFKTLPIAE--WAGITEGQPRVVQGEFNKDGTEVWFS  385 (432)
T ss_dssp             SCC-----------------CEEEECHHH--HHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred             cCC-----------------ceEeccccc--ccccCCCCCcEEEeEECCCCCEEEEE
Confidence            654                 344555422  24455555556689999999877443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=4.9e-13  Score=132.43  Aligned_cols=327  Identities=11%  Similarity=0.120  Sum_probs=184.3

Q ss_pred             cccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEEecC
Q 039497          135 LTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHRQAD  211 (642)
Q Consensus       135 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~~~~  211 (642)
                      |..+...... .+++||++||..+.++            .|.+|++.+++..+....+..   .++|+|++. +++. ..
T Consensus         8 L~GH~~~vit-c~~~~~~~l~tgs~Dg------------~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~-l~s~-s~   72 (355)
T d1nexb2           8 LRGHMTSVIT-CLQFEDNYVITGADDK------------MIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSG-ST   72 (355)
T ss_dssp             EECCSSSCEE-EEEEETTEEEEEETTT------------EEEEEETTTTEEEEEEECCSSCEEEEEEETTTE-EEEE-ET
T ss_pred             ECCcCCCcEE-EEEECCCEEEEEeCCC------------eEEEEECCCCcEEEEEECCCCCEEEEEEcCCCE-EEEE-ec
Confidence            4444433322 4788999999887766            799999998876555443332   458999864 4454 46


Q ss_pred             CCceEEEEEecCCCcccccCCccceeeCCC--CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCee
Q 039497          212 DGWWSIFRVSFPENLEFLGFPIAPTRVTPP--GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFV  289 (642)
Q Consensus       212 ~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  289 (642)
                      ++...+|.+  ....       ........  ........++++++.++....++     .+.+||+.........    
T Consensus        73 D~~i~iw~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~i~iw~~~~~~~~~~~----  134 (355)
T d1nexb2          73 DRTVRVWDI--KKGC-------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN-----TLHVWKLPKESSVPDH----  134 (355)
T ss_dssp             TCCEEEEET--TTTE-------EEEEECCCSSCEEEEEEEEETTEEEEEEEETTS-----EEEEEECCC-----------
T ss_pred             ccccccccc--cccc-------cccccccccccccccccccccccceeeeecCCC-----cEEEEEccCCceeccc----
Confidence            786555544  4431       12222222  22233445678998888865544     8899998432211000    


Q ss_pred             cCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEee-eCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE
Q 039497          290 SANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLR-LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT  368 (642)
Q Consensus       290 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~  368 (642)
                      ...          ..      ................... .......+.++++.++....   ...|.++++..++...
T Consensus       135 ~~~----------~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---d~~i~~~d~~~~~~~~  195 (355)
T d1nexb2         135 GEE----------HD------YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY---DNTLIVWDVAQMKCLY  195 (355)
T ss_dssp             --------------C------CCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET---TSCEEEEETTTTEEEE
T ss_pred             ccc----------ce------eccceeccccccceeeeeeeccccccccccccceeeeecc---cceeeeeeccccccee
Confidence            000          00      0000000000000111111 11122356777887776543   3578888988776544


Q ss_pred             Eee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCC
Q 039497          369 LIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPD  446 (642)
Q Consensus       369 l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD  446 (642)
                      ...  ........|+|+++.++....       ++.+++|++..        +.     ....+..+. ..+..+.++  
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~i~i~d~~~--------~~-----~~~~~~~h~-~~v~~~~~~--  252 (355)
T d1nexb2         196 ILSGHTDRIYSTIYDHERKRCISASM-------DTTIRIWDLEN--------GE-----LMYTLQGHT-ALVGLLRLS--  252 (355)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEET-------TSCEEEEETTT--------CC-----EEEEECCCS-SCCCEEEEC--
T ss_pred             eeeccccccccccccccceeeecccc-------cceEEeeeccc--------cc-----ccccccccc-ccccccccc--
Confidence            433  455678899999999988774       67888888754        22     445555444 556666665  


Q ss_pred             CCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccc-eeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCce
Q 039497          447 GKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTM-PSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGL  525 (642)
Q Consensus       447 g~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~-~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  525 (642)
                      +++|+..+.   +..|.+||+.++..     .+..+...... ..++++++.|+..+ ++        .|++||+.+++.
T Consensus       253 ~~~l~~~~~---dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~g~-d~--------~i~vwd~~tg~~  315 (355)
T d1nexb2         253 DKFLVSAAA---DGSIRGWDANDYSR-----KFSYHHTNLSAITTFYVSDNILVSGS-EN--------QFNIYNLRSGKL  315 (355)
T ss_dssp             SSEEEEECT---TSEEEEEETTTCCE-----EEEEECTTCCCCCEEEECSSEEEEEE-TT--------EEEEEETTTCCB
T ss_pred             cceeeeeec---ccccccccccccce-----ecccccCCceEEEEEcCCCCEEEEEe-CC--------EEEEEECCCCCE
Confidence            567766653   33799999987763     33222222333 36788888665544 33        399999988775


Q ss_pred             EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEec
Q 039497          526 RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANL  562 (642)
Q Consensus       526 ~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~  562 (642)
                      ......++..       .+..++|+|+  .++++...
T Consensus       316 ~~~~~~~~~~-------~V~~v~~~~~--~~~~~~s~  343 (355)
T d1nexb2         316 VHANILKDAD-------QIWSVNFKGK--TLVAAVEK  343 (355)
T ss_dssp             CCSCTTTTCS-------EEEEEEEETT--EEEEEEES
T ss_pred             EEEEecCCCC-------CEEEEEEcCC--eEEEEEEC
Confidence            4322223333       6778899876  34444433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.60  E-value=1.9e-12  Score=129.99  Aligned_cols=321  Identities=11%  Similarity=0.012  Sum_probs=176.0

Q ss_pred             cceEeeCCeEEEEEe--cCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEecc-----CCc
Q 039497          195 WPTWSGDSTIYFHRQ--ADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRK-----NRN  267 (642)
Q Consensus       195 ~~~wspdg~~~~~~~--~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~-----~~~  267 (642)
                      ..+++|||+.+++..  ...+...||.+|..+++       ...++....  ...++|||||++|+++....     +..
T Consensus        25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~-------~~~~~~~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS-------ILGHVNGGF--LPNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             ccccCCCCCEEEEEcccccCCCceEEEEECCCCC-------EEEEEeCCC--CccEEEcCCCCEEEEEeecCCccccccc
Confidence            358999996555542  22344589999998884       333443332  33689999999999976533     123


Q ss_pred             eeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEE
Q 039497          268 FRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFN  347 (642)
Q Consensus       268 ~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  347 (642)
                      ...+++||+....              .+...                 ..  ................|++||+.+++.
T Consensus        96 ~~~v~v~D~~t~~--------------~~~~~-----------------~~--~~~~~~~~~~~~~~~~~s~dg~~~~v~  142 (373)
T d2madh_          96 TDYVEVFDPVTFL--------------PIADI-----------------EL--PDAPRFDVGPYSWMNANTPNNADLLFF  142 (373)
T ss_pred             ceEEEEEECCCCc--------------EEEEE-----------------ec--CCcceeEeccCCCcEEEEeCCCcEEEE
Confidence            3467788773321              11110                 00  000000111122356899999988775


Q ss_pred             ecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497          348 HDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV  427 (642)
Q Consensus       348 ~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  427 (642)
                      .. .....+.+++....+....  ......+.++|+|+.+++...      .++.+.+|+...  .      .     ..
T Consensus       143 ~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~~~v~~~------~dg~~~~~~~~~--~------~-----~~  200 (373)
T d2madh_         143 QF-AAGPAVGLVVQGGSSDDQL--LSSPTCYHIHPGAPSTFYLLC------AQGGLAKTDHAG--G------A-----AG  200 (373)
T ss_pred             EE-cCCCceEEeeccCCeEEEE--eccceeEEEecCCCcEEEEEc------CCCeEEEEEcCC--c------e-----ee
Confidence            43 3334566666665543222  334567889999998877663      366777777644  1      1     11


Q ss_pred             EEccc-----cCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc---------cceeeCCCCCCcccceeEec
Q 039497          428 KILTK-----EETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN---------GDIRQLTDGPWIDTMPSWSP  493 (642)
Q Consensus       428 ~~l~~-----~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---------~~~~~l~~~~~~~~~~~~sp  493 (642)
                      .....     ..........+++++..++...    ...++.++..++...         .........+.......++|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (373)
T d2madh_         201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK  276 (373)
T ss_pred             EEEeeeccccCccceeeeEEECCCceEEEecC----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec
Confidence            11110     0001122345566665443322    124556665544320         00011111122334568999


Q ss_pred             CCCEEEEEecCCCCC--CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          494 KGDLIAFSSNRHNPD--NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       494 dG~~l~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      |++++++........  ......++++|+.+++.......+  .       .+..++|||||++++|......       
T Consensus       277 d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~--~-------~~~~~a~spDG~~~l~vt~~~d-------  340 (373)
T d2madh_         277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--H-------DVDAISVAQDGGPDLYALSAGT-------  340 (373)
T ss_pred             CCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC--C-------CeeEEEECCCCCEEEEEEeCCC-------
Confidence            999888765543210  113456889999887765443222  2       4578999999998776655433       


Q ss_pred             CCCCCCCCCcEEEEEcCCCce-eeccCCCCCCCCcEE
Q 039497          572 WPNQFQPYGDLYVVKLDGSGL-RRLTWNGYENGTPAW  607 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~~-~~lt~~~~~~~~~~~  607 (642)
                              ..|++||+.+++. ..+...+.....++.
T Consensus       341 --------~~v~v~D~~tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         341 --------EVLHIYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             --------CeEEEEECCCCCEEEEECCCCCCCcEEEE
Confidence                    2799999987764 455444444344443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=5e-13  Score=131.84  Aligned_cols=270  Identities=12%  Similarity=0.028  Sum_probs=169.5

Q ss_pred             eeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEee--------cCCCCcccCCeecCCCCEEEEEEeecCCCC
Q 039497          236 TRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT--------LNPNFHHYNPFVSANSEFIGYHRFRGESTE  307 (642)
Q Consensus       236 ~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~  307 (642)
                      +.|.+|...+..++|+|||++|+....++     .|.+||+.        ..+...+....|+|+|+.++....++.   
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg-----~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~---  120 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSRLLVSASQDG-----KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI---  120 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTT-----EEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCC---
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCC-----ceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccce---
Confidence            45677777888999999999999866544     89999983        234556677899999999888755443   


Q ss_pred             CCcccceEeeccCCCceeEEeeeCC----CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeee
Q 039497          308 GQSTIPHLEPVASPVKELRMLRLNG----SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWS  381 (642)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~s  381 (642)
                         ...+........... .....+    ........+..+.....   ...................  ...+....+.
T Consensus       121 ---i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (340)
T d1tbga_         121 ---CSIYNLKTREGNVRV-SRELAGHTGYLSCCRFLDDNQIVTSSG---DTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             ---EEEEESSSSCSCCCE-EEEECCCSSCEEEEEEEETTEEEEEET---TTEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             ---eeccccccccccccc-ceecccccccccccccccccccccccc---cccccccccccccccccccccceeEeeeccc
Confidence               111211111111110 111111    01111222222333221   1233334444333222222  4456667788


Q ss_pred             cCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCcee
Q 039497          382 PTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKN  461 (642)
Q Consensus       382 pdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~  461 (642)
                      +++..++....       +..+.+|++..        +.     ....+..+. ..+..++|+|||++|+..+.   ...
T Consensus       194 ~~~~~~~~~~~-------d~~v~i~d~~~--------~~-----~~~~~~~h~-~~i~~v~~~p~~~~l~s~s~---d~~  249 (340)
T d1tbga_         194 PDTRLFVSGAC-------DASAKLWDVRE--------GM-----CRQTFTGHE-SDINAICFFPNGNAFATGSD---DAT  249 (340)
T ss_dssp             TTSSEEEEEET-------TTEEEEEETTT--------TE-----EEEEECCCS-SCEEEEEECTTSSEEEEEET---TSC
T ss_pred             cccceeEEeec-------CceEEEEECCC--------Cc-----EEEEEeCCC-CCeEEEEECCCCCEEEEEeC---CCe
Confidence            88887776653       67889998754        12     344555554 67788999999999987764   347


Q ss_pred             EEEEECCCCccccceeeCC--CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497          462 LFVLDAVNGEFNGDIRQLT--DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV  539 (642)
Q Consensus       462 l~~~d~~~g~~~~~~~~l~--~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  539 (642)
                      |.+|++...+.   ...+.  .....+..+.|+|+|++|+..+.++.        |++||+.+++...... ++.+    
T Consensus       250 i~~~~~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~--------i~iwd~~~~~~~~~~~-~H~~----  313 (340)
T d1tbga_         250 CRLFDLRADQE---LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN--------CNVWDALKADRAGVLA-GHDN----  313 (340)
T ss_dssp             EEEEETTTTEE---EEEECCTTCCSCEEEEEECSSSCEEEEEETTSC--------EEEEETTTCCEEEEEC-CCSS----
T ss_pred             EEEEeeccccc---ccccccccccCceEEEEECCCCCEEEEEECCCE--------EEEEECCCCcEEEEEc-CCCC----
Confidence            89999987664   33332  33345677899999999988887664        9999998876654433 4444    


Q ss_pred             ccccccceEEcCCCCEEEEEEecC
Q 039497          540 DRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       540 ~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                         .+..++|+|||++|+..+.++
T Consensus       314 ---~V~~l~~s~d~~~l~s~s~Dg  334 (340)
T d1tbga_         314 ---RVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             ---CEEEEEECTTSSCEEEEETTS
T ss_pred             ---CEEEEEEeCCCCEEEEEccCC
Confidence               678899999999988777654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=6.9e-13  Score=130.79  Aligned_cols=287  Identities=13%  Similarity=0.056  Sum_probs=171.4

Q ss_pred             eEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC---cceEeeCCeEEEEE
Q 039497          132 FTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG---WPTWSGDSTIYFHR  208 (642)
Q Consensus       132 ~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~wspdg~~~~~~  208 (642)
                      .+.|..|.......+|||||++||..+.++            .|.+|++.+++.......+..   .++|+|++.++++.
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg------------~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  115 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDG------------KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG  115 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTT------------EEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEE
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCC------------ceeeeecccceeEEEEecccccEEeeEeeccceeeeee
Confidence            345666777777889999999999988766            799999998876655443332   45999999888777


Q ss_pred             ecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCe
Q 039497          209 QADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPF  288 (642)
Q Consensus       209 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  288 (642)
                       ..++...+|.........     .....+..+..... ......+..+.....                          
T Consensus       116 -~~d~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------------  162 (340)
T d1tbga_         116 -GLDNICSIYNLKTREGNV-----RVSRELAGHTGYLS-CCRFLDDNQIVTSSG--------------------------  162 (340)
T ss_dssp             -ETTCCEEEEESSSSCSCC-----CEEEEECCCSSCEE-EEEEEETTEEEEEET--------------------------
T ss_pred             -cccceeeccccccccccc-----ccceeccccccccc-ccccccccccccccc--------------------------
Confidence             456755555543332210     01112222211111 111111221222111                          


Q ss_pred             ecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeE
Q 039497          289 VSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWT  368 (642)
Q Consensus       289 ~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~  368 (642)
                         |....... ....       . .........       .......+.+.+..++....   ...|.++|+..++...
T Consensus       163 ---~~~~~~~~-~~~~-------~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---d~~v~i~d~~~~~~~~  220 (340)
T d1tbga_         163 ---DTTCALWD-IETG-------Q-QTTTFTGHT-------GDVMSLSLAPDTRLFVSGAC---DASAKLWDVREGMCRQ  220 (340)
T ss_dssp             ---TTEEEEEE-TTTT-------E-EEEEEECCS-------SCEEEEEECTTSSEEEEEET---TTEEEEEETTTTEEEE
T ss_pred             ---cccccccc-cccc-------c-ccccccccc-------eeEeeeccccccceeEEeec---CceEEEEECCCCcEEE
Confidence               11100000 0000       0 000000000       00012356677776655433   3578888988876554


Q ss_pred             Eee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc-cCCCCccCcEECC
Q 039497          369 LIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK-EETGNNAFPSCSP  445 (642)
Q Consensus       369 l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~Sp  445 (642)
                      ...  ...+..+.|+|+++.|+..+.       ++.+.+|++..        ..     ....+.. .....+..+.|+|
T Consensus       221 ~~~~h~~~i~~v~~~p~~~~l~s~s~-------d~~i~~~~~~~--------~~-----~~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         221 TFTGHESDINAICFFPNGNAFATGSD-------DATCRLFDLRA--------DQ-----ELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEET-------TSCEEEEETTT--------TE-----EEEEECCTTCCSCEEEEEECS
T ss_pred             EEeCCCCCeEEEEECCCCCEEEEEeC-------CCeEEEEeecc--------cc-----cccccccccccCceEEEEECC
Confidence            433  556788999999999888764       67888988754        11     2222221 1113466789999


Q ss_pred             CCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEe
Q 039497          446 DGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK  519 (642)
Q Consensus       446 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d  519 (642)
                      +|++|+..+..   ..|++||+.+++.   +..+..+...+..++|+|||++|+..+.++.        |++||
T Consensus       281 ~~~~l~~g~~d---g~i~iwd~~~~~~---~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~--------v~iWd  340 (340)
T d1tbga_         281 SGRLLLAGYDD---FNCNVWDALKADR---AGVLAGHDNRVSCLGVTDDGMAVATGSWDSF--------LKIWN  340 (340)
T ss_dssp             SSCEEEEEETT---SCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSCEEEEETTSC--------EEEEC
T ss_pred             CCCEEEEEECC---CEEEEEECCCCcE---EEEEcCCCCCEEEEEEeCCCCEEEEEccCCE--------EEEeC
Confidence            99998877643   3799999998886   6777777778889999999999988877654        88876

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.59  E-value=1.9e-12  Score=130.08  Aligned_cols=302  Identities=8%  Similarity=-0.057  Sum_probs=157.8

Q ss_pred             cCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecC-CCcceEeeCCeEEEEEecCCC-------
Q 039497          142 DYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCER-GGWPTWSGDSTIYFHRQADDG-------  213 (642)
Q Consensus       142 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~~~~~wspdg~~~~~~~~~~g-------  213 (642)
                      ....++||||++|++.....       ......||++|.++++........ ...++|||||+.+++.....+       
T Consensus        23 ~~~~a~spdg~~~~~~~~~~-------~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAH-------HSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             ccccccCCCCCEEEEEcccc-------cCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCccccccc
Confidence            34578999999998764322       113457999999999866544322 235799999976666532111       


Q ss_pred             ceEEEEEecCCCcccccCCccceeeCCCCC-------ccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccC
Q 039497          214 WWSIFRVSFPENLEFLGFPIAPTRVTPPGV-------HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYN  286 (642)
Q Consensus       214 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  286 (642)
                      .-.|..+|..+++       ....+..+..       ....+.|++||+++++......   ..+.+++.          
T Consensus        96 ~~~v~v~D~~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~---~~~~~~~~----------  155 (373)
T d2madh_          96 TDYVEVFDPVTFL-------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG---PAVGLVVQ----------  155 (373)
T ss_pred             ceEEEEEECCCCc-------EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC---CceEEeec----------
Confidence            1256777777763       2222222211       1123455666665554322110   01111111          


Q ss_pred             CeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCe
Q 039497          287 PFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR  366 (642)
Q Consensus       287 ~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~  366 (642)
                                                      ..  ..............++|+|+.+++....  ...+.+++...++.
T Consensus       156 --------------------------------~~--~~~~~~~~~~~~~~~s~~g~~~~v~~~~--dg~~~~~~~~~~~~  199 (373)
T d2madh_         156 --------------------------------GG--SSDDQLLSSPTCYHIHPGAPSTFYLLCA--QGGLAKTDHAGGAA  199 (373)
T ss_pred             --------------------------------cC--CeEEEEeccceeEEEecCCCcEEEEEcC--CCeEEEEEcCCcee
Confidence                                            00  0000111112345789999877665432  35677778777665


Q ss_pred             eEEee--------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCC--C-CCCCccccceEEccccCC
Q 039497          367 WTLIK--------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSD--D-NNREEIPCDVKILTKEET  435 (642)
Q Consensus       367 ~~l~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~~  435 (642)
                      .....        ........+++++..++...        +..+.++....  ....  . .....  .......... 
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~-  266 (373)
T d2madh_         200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--------SGKILQADISA--AGATNKAPIDALS--GGRKADTWRP-  266 (373)
T ss_pred             eEEEeeeccccCccceeeeEEECCCceEEEecC--------CceEEEEEcCC--CeEEEEEeecccc--CcEEeeeecc-
Confidence            44332        11122334555554443322        23333333221  0000  0 00000  0111111111 


Q ss_pred             CCccCcEECCCCCeEEEEeCCC-------CceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497          436 GNNAFPSCSPDGKFLVFRSGRS-------GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       436 ~~~~~~~~SpDg~~l~~~~~~~-------g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~  508 (642)
                      ......+++||++++++.....       ....++++|..+++.   +..+.. ......++|||||++++|.....   
T Consensus       267 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~---~~~~~~-~~~~~~~a~spDG~~~l~vt~~~---  339 (373)
T d2madh_         267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT---SSQISL-GHDVDAISVAQDGGPDLYALSAG---  339 (373)
T ss_pred             CcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE---EEEecC-CCCeeEEEECCCCCEEEEEEeCC---
Confidence            2344578999999887665432       234789999999886   455543 34566789999999876654432   


Q ss_pred             CCCceeEEEEeCCCCceEEee
Q 039497          509 NVEAFSLYVIKPDGSGLRRIH  529 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~~~~~l~  529 (642)
                         ...|++||+.+++.....
T Consensus       340 ---d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         340 ---TEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ---CCeEEEEECCCCCEEEEE
Confidence               234999999988775443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.54  E-value=2e-12  Score=128.77  Aligned_cols=303  Identities=13%  Similarity=0.042  Sum_probs=162.2

Q ss_pred             ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeee
Q 039497           95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTD  174 (642)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~  174 (642)
                      .|+.++.+++++......     ....+|+++..+++....... +....++|||||++|++.......  .........
T Consensus         8 a~spdg~~~~v~~~~~~~-----~~~~v~v~D~~tg~~~~~~~~-g~~~~~a~SpDg~~l~v~~~~~~~--~~~g~~d~~   79 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFA-----AVTQQFVIDGEAGRVIGMIDG-GFLPNPVVADDGSFIAHASTVFSR--IARGERTDY   79 (355)
T ss_dssp             CCCCCTTEEEEEECGGGC-----SSEEEEEEETTTTEEEEEEEE-CSSCEEEECTTSSCEEEEEEEEEE--TTEEEEEEE
T ss_pred             eeCCCCCEEEEEecccCC-----CcCeEEEEECCCCcEEEEEEC-CCCCceEEcCCCCEEEEEeCCCcc--ccccCCCCE
Confidence            355677787655433211     123799999999886543322 233358999999999876532100  000011347


Q ss_pred             EEEEEecCCCceeEeec-CC---------CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCC-
Q 039497          175 IVVFQESDPNKRVIVCE-RG---------GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGV-  243 (642)
Q Consensus       175 l~~~~~~~g~~~~l~~~-~~---------~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-  243 (642)
                      |++||+.+++....... ..         ...+|+|||+.+++.+. .....+..++..++.       ....+..+.. 
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~  151 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKA-------FKRMLDVPDCY  151 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTE-------EEEEEECCSEE
T ss_pred             EEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecC-CCCceeeeeecCCCc-------EeeEEecCCcc
Confidence            99999999987654431 11         13489999976655422 222356667777662       2222222210 


Q ss_pred             ------ccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEee
Q 039497          244 ------HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEP  317 (642)
Q Consensus       244 ------~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~  317 (642)
                            ....+.+++                                       ||+.+++.......      ......
T Consensus       152 ~~~~~~~~~~~~~~~---------------------------------------dg~~~~v~~~~~~~------~~~~~~  186 (355)
T d2bbkh_         152 HIFPTAPDTFFMHCR---------------------------------------DGSLAKVAFGTEGT------PEITHT  186 (355)
T ss_dssp             EEEEEETTEEEEEET---------------------------------------TSCEEEEECCSSSC------CEEEEC
T ss_pred             eEeecCCcceEEEcC---------------------------------------CCCEEEEEecCCCe------EEEEec
Confidence                  111123344                                       44444333211110      000000


Q ss_pred             ccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecC
Q 039497          318 VASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPT  383 (642)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spd  383 (642)
                      ......    .......+.+++++..+++...   ...++++++.++....+..              ......+.++||
T Consensus       187 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d  259 (355)
T d2bbkh_         187 EVFHPE----DEFLINHPAYSQKAGRLVWPTY---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA  259 (355)
T ss_dssp             CCCSCT----TSCBCSCCEEETTTTEEEEEBT---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred             ccccce----ecceeeeccccCCCCeEEEecC---CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCC
Confidence            000000    0001123467777777887654   3678888888876544322              123446889999


Q ss_pred             CCEEEEEEcCC-CcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeE
Q 039497          384 EKHVIYTSTGP-IFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNL  462 (642)
Q Consensus       384 g~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l  462 (642)
                      ++.+++..... ..........++.++.  .     ++.    ....+..+  .....++|||||+.++|.+.. +...|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~v~v~d~--~-----t~~----~~~~~~~~--~~~~~~a~spDG~~~l~v~~~-~d~~i  325 (355)
T d2bbkh_         260 LDRIYLLVDQRDEWRHKTASRFVVVLDA--K-----TGE----RLAKFEMG--HEIDSINVSQDEKPLLYALST-GDKTL  325 (355)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEET--T-----TCC----EEEEEEEE--EEECEEEECCSSSCEEEEEET-TTTEE
T ss_pred             CCeEEEEeccCCceeecCCCCeEEEEeC--C-----CCc----EEEEecCC--CCEEEEEEcCCCCeEEEEEEC-CCCEE
Confidence            99988776431 1111222334444444  2     221    33444333  345678999999976665532 33589


Q ss_pred             EEEECCCCccccceeeCCCC
Q 039497          463 FVLDAVNGEFNGDIRQLTDG  482 (642)
Q Consensus       463 ~~~d~~~g~~~~~~~~l~~~  482 (642)
                      ++||+++|+.   ++.|...
T Consensus       326 ~v~D~~tg~~---~~~i~~~  342 (355)
T d2bbkh_         326 YIHDAESGEE---LRSVNQL  342 (355)
T ss_dssp             EEEETTTCCE---EEEECCC
T ss_pred             EEEECCCCCE---EEEEeCc
Confidence            9999999997   6667543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=6.8e-12  Score=123.39  Aligned_cols=282  Identities=13%  Similarity=0.094  Sum_probs=163.7

Q ss_pred             EEEEecCCCceEEEEEecCCCcccccCCccceeeCC--CCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCC
Q 039497          205 YFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTP--PGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNF  282 (642)
Q Consensus       205 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~  282 (642)
                      +++. ..++  +|..+|+.+++       ....+..  .+.....+++||||++|+++....    ..|.+||+..    
T Consensus         4 ~vt~-~~d~--~v~v~D~~s~~-------~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~----~~v~v~D~~t----   65 (337)
T d1pbyb_           4 ILAP-ARPD--KLVVIDTEKMA-------VDKVITIADAGPTPMVPMVAPGGRIAYATVNKS----ESLVKIDLVT----   65 (337)
T ss_dssp             EEEE-ETTT--EEEEEETTTTE-------EEEEEECTTCTTCCCCEEECTTSSEEEEEETTT----TEEEEEETTT----
T ss_pred             EEEE-cCCC--EEEEEECCCCe-------EEEEEECCCCCCCccEEEECCCCCEEEEEECCC----CeEEEEECCC----
Confidence            3443 4556  77778888873       3344433  234567889999999987754332    3788998732    


Q ss_pred             cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC---------CCc
Q 039497          283 HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF---------ELN  353 (642)
Q Consensus       283 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---------~~~  353 (642)
                                |+.+....                 ....  .  ..........|+|||++++.....         ...
T Consensus        66 ----------~~~~~~~~-----------------~~~~--~--~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T d1pbyb_          66 ----------GETLGRID-----------------LSTP--E--ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             ----------CCEEEEEE-----------------CCBT--T--EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             ----------CcEEEEEe-----------------cCCC--c--ccccceeeEEEcCCCcEEEEeecCCcceeeeccccc
Confidence                      22221111                 0000  0  111222356889999988775431         134


Q ss_pred             eeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccc
Q 039497          354 AGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTK  432 (642)
Q Consensus       354 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  432 (642)
                      ..+.+++...++...... ...+..+.|+|||++++...         ....+|+...         +.    ....+..
T Consensus       115 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------~~~~~~d~~~---------~~----~~~~~~~  172 (337)
T d1pbyb_         115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------RDLHVMDPEA---------GT----LVEDKPI  172 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------SSEEEEETTT---------TE----EEEEECS
T ss_pred             cceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc---------CCcceeeeec---------Cc----EEEEeec
Confidence            567888888877655444 55677899999999988764         2344444322         10    1222222


Q ss_pred             cCCCCccCcEECCCCCeEEEEeCC---------------------CCceeEEEEECCCCccccceeeCCCCCCcccceeE
Q 039497          433 EETGNNAFPSCSPDGKFLVFRSGR---------------------SGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW  491 (642)
Q Consensus       433 ~~~~~~~~~~~SpDg~~l~~~~~~---------------------~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~  491 (642)
                      .  .......++|++..+......                     .....+++++..+++.  ....+...........+
T Consensus       173 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  248 (337)
T d1pbyb_         173 Q--SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM--AMREVRIMDVFYFSTAV  248 (337)
T ss_dssp             T--TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE--EEEEEEECSSCEEEEEE
T ss_pred             C--CccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE--EEEEecCCCcceEEEEe
Confidence            1  122233444554433211100                     0133688888887764  01122233344556689


Q ss_pred             ecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCC
Q 039497          492 SPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVS  571 (642)
Q Consensus       492 spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~  571 (642)
                      +|++++++....          .|.+||+.+++........  .       .+..++|||||++||....++        
T Consensus       249 ~~~~~~~~~~~~----------~i~v~d~~~~~~~~~~~~~--~-------~~~~~~~s~dG~~l~v~~~~~--------  301 (337)
T d1pbyb_         249 NPAKTRAFGAYN----------VLESFDLEKNASIKRVPLP--H-------SYYSVNVSTDGSTVWLGGALG--------  301 (337)
T ss_dssp             CTTSSEEEEEES----------EEEEEETTTTEEEEEEECS--S-------CCCEEEECTTSCEEEEESBSS--------
T ss_pred             cccceEEEEccc----------cEEEEECCCCcEEEEEcCC--C-------CEEEEEECCCCCEEEEEeCCC--------
Confidence            999998765542          2899999988765544322  2       457899999999998765432        


Q ss_pred             CCCCCCCCCcEEEEEcCCCc-eeeccC
Q 039497          572 WPNQFQPYGDLYVVKLDGSG-LRRLTW  597 (642)
Q Consensus       572 ~~~~~~~~~~l~~~~~~~~~-~~~lt~  597 (642)
                               .|.+||..+.+ +.+|..
T Consensus       302 ---------~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         302 ---------DLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             ---------EEEEEETTTCCEEEEEEC
T ss_pred             ---------cEEEEECCCCcEEEEEEC
Confidence                     79999998765 444543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=1.3e-11  Score=123.85  Aligned_cols=306  Identities=8%  Similarity=-0.058  Sum_probs=161.4

Q ss_pred             ccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeee
Q 039497           95 RPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTD  174 (642)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~  174 (642)
                      .+..+++..+........+     ..+||.++..+++.......... ..++|||||++|++.......  .........
T Consensus        26 a~~~~~~~~~v~~~~~~~g-----~~~~~~~d~~~~~~~~~~~~~~~-~~~a~spDg~~i~~~~~~~~~--~~~g~~d~~   97 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAG-----TTENWVSCAGCGVTLGHSLGAFL-SLAVAGHSGSDFALASTSFAR--SAKGKRTDY   97 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCS-----SEEEEEEETTTTEEEEEEEECTT-CEEEECTTSSCEEEEEEEETT--TTSSSEEEE
T ss_pred             ccCCCCcceeEEeeccCCC-----cceEEEEeCCCCcEEEEEeCCCC-CcceECCCCCEEEEEcccCcc--ccccccCCe
Confidence            4455666654443332211     13799999999988776554433 358999999999987642210  000112456


Q ss_pred             EEEEEecCCCceeEee-cC------C---CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCc
Q 039497          175 IVVFQESDPNKRVIVC-ER------G---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVH  244 (642)
Q Consensus       175 l~~~~~~~g~~~~l~~-~~------~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  244 (642)
                      |.+||..+++...... +.      +   ..++|||||+.+++.+...+  .++.+++.+++       ....+..+.. 
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~--~v~~~d~~~~~-------~~~~~~~~~~-  167 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS--AAAGLSVPGAS-------DDQLTKSASC-  167 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS--CEEEEEETTTE-------EEEEEECSSC-
T ss_pred             EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC--eEEEEECCCCc-------EeEEeeccCc-
Confidence            9999999988655432 11      1   24589999976666544445  67777887773       2223322221 


Q ss_pred             cccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCce
Q 039497          245 CFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKE  324 (642)
Q Consensus       245 ~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (642)
                         +.++|+++..++                            .+++||+.+++.......      ..+......... 
T Consensus       168 ---~~~~~~~~~~~v----------------------------~~~~Dg~~~~~~~~~~~~------~~~~~~~~~~~~-  209 (368)
T d1mdah_         168 ---FHIHPGAAATHY----------------------------LGSCPASLAASDLAAAPA------AAGIVGAQCTGA-  209 (368)
T ss_dssp             ---CCCEEEETTEEE----------------------------CCCCTTSCEEEECCSSCC------CCEECCCCSCTT-
T ss_pred             ---ceEccCCCceEE----------------------------EEcCCCCEEEEEecCCce------eeeeeecccccc-
Confidence               112233322222                            234444433333211110      111111000000 


Q ss_pred             eEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------------cCCceeeeeecCCCEEEEE
Q 039497          325 LRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------------DRTAFYNSWSPTEKHVIYT  390 (642)
Q Consensus       325 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------------~~~~~~~~~spdg~~l~~~  390 (642)
                         .........++++|. +++..    ...+++++...+....+..              ......+.++|+++.+++.
T Consensus       210 ---~~~~~~~~~~~~~g~-~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~  281 (368)
T d1mdah_         210 ---QNCSSQAAQANYPGM-LVWAV----ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             ---SCBCSCCEEETTTTE-EEECB----SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             ---cccceeecccccCcE-EEEec----CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEE
Confidence               000112335566664 33321    2456666666655444332              1234467899999998877


Q ss_pred             EcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC
Q 039497          391 STGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG  470 (642)
Q Consensus       391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g  470 (642)
                      .............+++.++.  .     ++.    ....+...  .....++|||||+.++|.+.. +...|++||..+|
T Consensus       282 ~~~~~~~~~~~~~~v~v~D~--~-----t~~----~~~~~~~~--~~~~~~a~spDG~~~ly~s~~-~~~~v~v~D~~tg  347 (368)
T d1mdah_         282 TVEHSRSCLAAAENTSSVTA--S-----VGQ----TSGPISNG--HDSDAIIAAQDGASDNYANSA-GTEVLDIYDAASD  347 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEES--S-----SCC----EEECCEEE--EEECEEEECCSSSCEEEEEET-TTTEEEEEESSSC
T ss_pred             ecCCCceeecCCceEEEEEC--C-----CCc----EeEEecCC--CceeEEEECCCCCEEEEEEeC-CCCeEEEEECCCC
Confidence            65322222233445666655  2     231    23333322  355678999999987666643 3348999999999


Q ss_pred             ccccceeeCCC
Q 039497          471 EFNGDIRQLTD  481 (642)
Q Consensus       471 ~~~~~~~~l~~  481 (642)
                      +.   +..|.-
T Consensus       348 k~---~~~i~~  355 (368)
T d1mdah_         348 QD---QSSVEL  355 (368)
T ss_dssp             EE---EEECCC
T ss_pred             CE---EEEEEC
Confidence            86   555543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=9.5e-12  Score=122.45  Aligned_cols=240  Identities=11%  Similarity=-0.018  Sum_probs=147.1

Q ss_pred             ccccceeecCCcEEEEEEeccCCceeeEEEEEee----------cCC-CCcccCCeecC--CCCEEEEEEeecCCCCCCc
Q 039497          244 HCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLT----------LNP-NFHHYNPFVSA--NSEFIGYHRFRGESTEGQS  310 (642)
Q Consensus       244 ~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~----------~~~-~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~  310 (642)
                      ....++|+|+|+.|++...+.    ..++.++..          .++ ...+....|+|  +|+.|+....++.      
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~----~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~------   88 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKS----AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK------   88 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTE----EEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSE------
T ss_pred             CeEEEEECCCCCEEEEEeCCC----EEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCC------
Confidence            345688999999999864321    134444431          122 23456778998  5667666544443      


Q ss_pred             ccceEeeccCCCceeEEe-----e---eCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeee
Q 039497          311 TIPHLEPVASPVKELRML-----R---LNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSW  380 (642)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~  380 (642)
                      ..+|..........+...     .   .....+.|+++|++|+.... +....+.+++.+.++......  ...+..+.|
T Consensus        89 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  167 (325)
T d1pgua1          89 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE-GRDNFGVFISWDSGNSLGEVSGHSQRINACHL  167 (325)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC-CSSCSEEEEETTTCCEEEECCSCSSCEEEEEE
T ss_pred             EEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec-cccceEEEEeecccccceeeeecccccccccc
Confidence            455544332222222111     0   01135789999999988764 333456667777665443332  456788999


Q ss_pred             ecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEcc---ccCCCCccCcEECCCCCeEEEEeCCC
Q 039497          381 SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILT---KEETGNNAFPSCSPDGKFLVFRSGRS  457 (642)
Q Consensus       381 spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~SpDg~~l~~~~~~~  457 (642)
                      +|++..++++..      .++.+.+|++..        ..     ....+.   ... ..+..+.|+||+..++++...+
T Consensus       168 ~~~~~~~~~~~~------~d~~v~~~d~~~--------~~-----~~~~~~~~~~~~-~~v~~v~~~pd~~~~l~s~~~d  227 (325)
T d1pgua1         168 KQSRPMRSMTVG------DDGSVVFYQGPP--------FK-----FSASDRTHHKQG-SFVRDVEFSPDSGEFVITVGSD  227 (325)
T ss_dssp             CSSSSCEEEEEE------TTTEEEEEETTT--------BE-----EEEEECSSSCTT-CCEEEEEECSTTCCEEEEEETT
T ss_pred             cccccceEEEee------cccccccccccc--------cc-----cceecccccCCC-CccEEeeeccccceeccccccc
Confidence            999987665542      367888887643        11     112221   222 4567789999864444444333


Q ss_pred             CceeEEEEECCCCccccceeeCCCCCCcccceeEe---cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          458 GHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWS---PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       458 g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~s---pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                        ..|.+||+.+++.   +..+..+...+....|+   |||++|+..+.++.        |.+||+.+++...
T Consensus       228 --~~i~iwd~~~~~~---~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~--------i~iwd~~~~~~~~  287 (325)
T d1pgua1         228 --RKISCFDGKSGEF---LKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT--------IRVWDVTTSKCVQ  287 (325)
T ss_dssp             --CCEEEEETTTCCE---EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE--------EEEEETTTTEEEE
T ss_pred             --cceeeeeeccccc---cccccccccccccceeeeeccCCCEEEEEeCCCe--------EEEEECCCCCEEE
Confidence              3788999998886   66676555555556666   79999988876653        9999998876543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.45  E-value=5.2e-12  Score=124.77  Aligned_cols=234  Identities=11%  Similarity=-0.005  Sum_probs=140.5

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------cCCceeeeeecCCCEEEEEEcCC-----CcccCC
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------DRTAFYNSWSPTEKHVIYTSTGP-----IFQSER  400 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spdg~~l~~~~~~~-----~~~~~~  400 (642)
                      .+.|+|||++++....  ....|+++|+++++......        ......+.|+|||+++++.....     .+...+
T Consensus        44 ~l~~spDG~~l~v~~~--~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~  121 (346)
T d1jmxb_          44 TAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP  121 (346)
T ss_dssp             EEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             eEEECCCCCEEEEEEC--CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCc
Confidence            5689999998876553  34679999999887654433        12356789999999998776421     111123


Q ss_pred             CeEEEEEEEeecCCCCCCCCCccccceEEcc--ccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee
Q 039497          401 ATVQIARVSFQLDPSDDNNREEIPCDVKILT--KEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ  478 (642)
Q Consensus       401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~  478 (642)
                      ..+.+++...         +.    ....+.  ... .......+++|++.++. .     ..+.++++.+++.   +..
T Consensus       122 ~~i~~~~~~~---------~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~---~~~  178 (346)
T d1jmxb_         122 PRLEVFSTAD---------GL----EAKPVRTFPMP-RQVYLMRAADDGSLYVA-G-----PDIYKMDVKTGKY---TVA  178 (346)
T ss_dssp             CEEEEEEGGG---------GG----GBCCSEEEECC-SSCCCEEECTTSCEEEE-S-----SSEEEECTTTCCE---EEE
T ss_pred             ceEEEEeccc---------ce----eeeEEEeeecc-CceEEEEecCCCEEEEe-C-----CcceEEEccCCCE---EEE
Confidence            4445554433         11    111111  111 23445667777765443 2     2578888888875   444


Q ss_pred             CCCCCCcccceeEecCCCEEEEEecCCCC------------------CCCCceeEEEEeCCCCceEEeeecCCCCCCCcc
Q 039497          479 LTDGPWIDTMPSWSPKGDLIAFSSNRHNP------------------DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD  540 (642)
Q Consensus       479 l~~~~~~~~~~~~spdG~~l~~~~~~~~~------------------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  540 (642)
                      +..+ .......++|+++.++........                  .......+.++++.++............     
T Consensus       179 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  252 (346)
T d1jmxb_         179 LPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTE-----  252 (346)
T ss_dssp             ECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSS-----
T ss_pred             EecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccc-----
Confidence            4433 233456777877765433322110                  0112345777888777655443322222     


Q ss_pred             cccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEeec
Q 039497          541 RERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       541 ~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                        ......+++++..+++....                  .|..||...++..+....+.....++|||||++++...
T Consensus       253 --~~~~~~~~~~~~~~~~~~~~------------------~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~  310 (346)
T d1jmxb_         253 --LYFTGLRSPKDPNQIYGVLN------------------RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG  310 (346)
T ss_dssp             --CEEEEEECSSCTTEEEEEES------------------EEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES
T ss_pred             --eeEEEEEeCCCCEEEEecCC------------------eEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEe
Confidence              45667889999888776542                  78899998877554444445577999999998886543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1.5e-10  Score=113.96  Aligned_cols=300  Identities=10%  Similarity=-0.012  Sum_probs=176.6

Q ss_pred             eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497          197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL  276 (642)
Q Consensus       197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~  276 (642)
                      .+++|+.++++. ..+|..  ..++..+++       ....+..+...+..++|+|++ +|+....++     .+.+|++
T Consensus        18 c~~~~~~~l~tg-s~Dg~i--~vWd~~~~~-------~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~-----~i~iw~~   81 (355)
T d1nexb2          18 CLQFEDNYVITG-ADDKMI--RVYDSINKK-------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDR-----TVRVWDI   81 (355)
T ss_dssp             EEEEETTEEEEE-ETTTEE--EEEETTTTE-------EEEEEECCSSCEEEEEEETTT-EEEEEETTC-----CEEEEET
T ss_pred             EEEECCCEEEEE-eCCCeE--EEEECCCCc-------EEEEEECCCCCEEEEEEcCCC-EEEEEeccc-----ccccccc
Confidence            577888888887 567854  445666663       456667777778889999876 566644433     7888876


Q ss_pred             ecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeE
Q 039497          277 TLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGI  356 (642)
Q Consensus       277 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l  356 (642)
                      ....              .+...                 ........  .     ....++++++.++....   ...|
T Consensus        82 ~~~~--------------~~~~~-----------------~~~~~~~~--~-----~~~~~~~~~~~~~~~~~---d~~i  120 (355)
T d1nexb2          82 KKGC--------------CTHVF-----------------EGHNSTVR--C-----LDIVEYKNIKYIVTGSR---DNTL  120 (355)
T ss_dssp             TTTE--------------EEEEE-----------------CCCSSCEE--E-----EEEEEETTEEEEEEEET---TSEE
T ss_pred             cccc--------------ccccc-----------------cccccccc--c-----cccccccccceeeeecC---CCcE
Confidence            2211              00000                 00000000  0     12245666666666543   2455


Q ss_pred             EEEECCCCCeeEEee-----------------------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          357 KIAKSDGSKRWTLIK-----------------------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       357 ~~~d~~~~~~~~l~~-----------------------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      .++++..........                       ........+.++++.++....       +..+.+|++..   
T Consensus       121 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------d~~i~~~d~~~---  190 (355)
T d1nexb2         121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY-------DNTLIVWDVAQ---  190 (355)
T ss_dssp             EEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET-------TSCEEEEETTT---
T ss_pred             EEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecc-------cceeeeeeccc---
Confidence            666655443211100                       111122356677887777653       67788887744   


Q ss_pred             CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEec
Q 039497          414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSP  493 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~sp  493 (642)
                           +.     ......... .......|+|+++.++..+.+   ..|.+++..++..   +..+..+...+..+.|+ 
T Consensus       191 -----~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~---~~~~~~h~~~v~~~~~~-  252 (355)
T d1nexb2         191 -----MK-----CLYILSGHT-DRIYSTIYDHERKRCISASMD---TTIRIWDLENGEL---MYTLQGHTALVGLLRLS-  252 (355)
T ss_dssp             -----TE-----EEEEECCCS-SCEEEEEEETTTTEEEEEETT---SCEEEEETTTCCE---EEEECCCSSCCCEEEEC-
T ss_pred             -----cc-----ceeeeeccc-cccccccccccceeeeccccc---ceEEeeecccccc---ccccccccccccccccc-
Confidence                 11     233333333 556678999999999887743   4799999998886   66676666666666665 


Q ss_pred             CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCC
Q 039497          494 KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWP  573 (642)
Q Consensus       494 dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~  573 (642)
                       +++|+..+.++.        |++||+.............         ......++++++.|+. ..++          
T Consensus       253 -~~~l~~~~~dg~--------i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~-g~d~----------  303 (355)
T d1nexb2         253 -DKFLVSAAADGS--------IRGWDANDYSRKFSYHHTN---------LSAITTFYVSDNILVS-GSEN----------  303 (355)
T ss_dssp             -SSEEEEECTTSE--------EEEEETTTCCEEEEEECTT---------CCCCCEEEECSSEEEE-EETT----------
T ss_pred             -cceeeeeecccc--------cccccccccceecccccCC---------ceEEEEEcCCCCEEEE-EeCC----------
Confidence             567777776653        9999998765543332211         1233467888876554 4443          


Q ss_pred             CCCCCCCcEEEEEcCCCcee--eccCCCCCCCCcEEecCCceEEeec
Q 039497          574 NQFQPYGDLYVVKLDGSGLR--RLTWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       574 ~~~~~~~~l~~~~~~~~~~~--~lt~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                             .|.+||+.++++.  .+..+...+.+++|+|+. ++++..
T Consensus       304 -------~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~-~~~~~s  342 (355)
T d1nexb2         304 -------QFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVE  342 (355)
T ss_dssp             -------EEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE-EEEEEE
T ss_pred             -------EEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe-EEEEEE
Confidence                   7889999877643  344455567788999874 444433

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-10  Score=112.72  Aligned_cols=319  Identities=11%  Similarity=0.065  Sum_probs=184.6

Q ss_pred             cceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec--------CCCCcccCCeecCCCCEEEEEEeecCC
Q 039497          234 APTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL--------NPNFHHYNPFVSANSEFIGYHRFRGES  305 (642)
Q Consensus       234 ~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~~  305 (642)
                      ....+.+|...+.. ++++||++|+....++     .|++||+..        .+...+..+.|+++  .|+....++. 
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg-----~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~-   78 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDN-----TLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRT-   78 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTS-----CEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSC-
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCC-----eEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccc-
Confidence            34556777655544 5788999988865444     899999832        23444555667764  4444433222 


Q ss_pred             CCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCC
Q 039497          306 TEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEK  385 (642)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~  385 (642)
                           ...|  .........................+.+.....   ...+.+++...++..............+.+...
T Consensus        79 -----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
T d2ovrb2          79 -----LKVW--NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR---DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR  148 (342)
T ss_dssp             -----EEEE--ETTTTEEEEEECCCSSCEEEEEEETTEEEEEET---TSEEEEEESSSCCEEEEEECCSSCEEEEEECSS
T ss_pred             -----cccc--ccccccceecccccceeEeeeeccccccccccc---ceeEEEeecccccceeeeecccccceeeccccc
Confidence                 1112  111111111111011111122223333444332   356888888877765554433333444555666


Q ss_pred             EEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEE
Q 039497          386 HVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVL  465 (642)
Q Consensus       386 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~  465 (642)
                      .++....       ++.+.+|++..        ..     ....+..+.   .....+++|+++|+..+.+   ..|.+|
T Consensus       149 ~~~~~~~-------d~~i~~~d~~~--------~~-----~~~~~~~~~---~~~~~~~~~~~~l~s~~~d---g~i~~~  202 (342)
T d2ovrb2         149 RVVSGAY-------DFMVKVWDPET--------ET-----CLHTLQGHT---NRVYSLQFDGIHVVSGSLD---TSIRVW  202 (342)
T ss_dssp             CEEEEET-------TSCEEEEEGGG--------TE-----EEEEECCCS---SCEEEEEECSSEEEEEETT---SCEEEE
T ss_pred             eeeeecC-------CCeEEEeeccc--------ce-----eeEEEcCcc---cccccccCCCCEEEEEeCC---CeEEEe
Confidence            6666653       67788887654        11     233333332   3345677789998877643   479999


Q ss_pred             ECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCccccccc
Q 039497          466 DAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERIN  545 (642)
Q Consensus       466 d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~  545 (642)
                      |+..++.   +..+..+...+.  .+++++++|+..+.++.        |++||+...+...........       ...
T Consensus       203 d~~~~~~---~~~~~~~~~~v~--~~~~~~~~l~s~s~d~~--------i~iwd~~~~~~~~~~~~~~~~-------~~~  262 (342)
T d2ovrb2         203 DVETGNC---IHTLTGHQSLTS--GMELKDNILVSGNADST--------VKIWDIKTGQCLQTLQGPNKH-------QSA  262 (342)
T ss_dssp             ETTTCCE---EEEECCCCSCEE--EEEEETTEEEEEETTSC--------EEEEETTTCCEEEEECSTTSC-------SSC
T ss_pred             eccccee---eeEeccccccee--EEecCCCEEEEEcCCCE--------EEEEeccccccccccccccee-------eec
Confidence            9998875   555555544444  45556778888777654        999999877665444322111       123


Q ss_pred             ceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCce-eeccC-----CCCCCCCcEEecCCceEEeecC
Q 039497          546 HVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL-RRLTW-----NGYENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       546 ~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lt~-----~~~~~~~~~~s~dg~~~~~~~~  619 (642)
                      ...++.+++.++..+.++                 .|.+||+..++. ..+..     +...+..++|+|+++++++...
T Consensus       263 ~~~~~~~~~~~~s~s~Dg-----------------~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~  325 (342)
T d2ovrb2         263 VTCLQFNKNFVITSSDDG-----------------TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR  325 (342)
T ss_dssp             EEEEEECSSEEEEEETTS-----------------EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS
T ss_pred             eeecccCCCeeEEEcCCC-----------------EEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            345566777777766553                 788999987664 34432     2334678999999998888776


Q ss_pred             CCcccccceeeeecc
Q 039497          620 LEDDIGDKLRGQFDE  634 (642)
Q Consensus       620 ~~~~~~~~~~~~~~~  634 (642)
                      .|.-...+....|+.
T Consensus       326 dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         326 NGTEETKLLVLDFDV  340 (342)
T ss_dssp             SSSSCCEEEEEECCC
T ss_pred             CCCCeeEEEEEeCCC
Confidence            664445556666654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=4.7e-11  Score=117.33  Aligned_cols=249  Identities=9%  Similarity=0.028  Sum_probs=146.3

Q ss_pred             ccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeee----CCCccEEcC--CCCEEEEEecCCCceeEE
Q 039497          284 HYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRL----NGSFPSFSP--DGGLIVFNHDFELNAGIK  357 (642)
Q Consensus       284 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~sp--dg~~l~~~~~~~~~~~l~  357 (642)
                      .....|+|+|..|++...+..      .+..+...............    .....+|+|  +|++|+..+. ++  .|.
T Consensus        20 ~t~l~~~~~~~~la~~~~~~~------~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~-Dg--~i~   90 (325)
T d1pgua1          20 TTHLSYDPTTNAIAYPCGKSA------FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE-SG--KVI   90 (325)
T ss_dssp             CCCCEEETTTTEEEEEETTEE------EEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET-TS--EEE
T ss_pred             eEEEEECCCCCEEEEEeCCCE------EEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeC-CC--CEE
Confidence            345689999999998632111      11111111111111111111    113568998  5666665443 44  455


Q ss_pred             EEECCCCCe-eEEe---------ecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccce
Q 039497          358 IAKSDGSKR-WTLI---------KDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDV  427 (642)
Q Consensus       358 ~~d~~~~~~-~~l~---------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  427 (642)
                      +++...++. ..+.         ....+..+.|+++|+.|+.+..+     .+....+|..+.        +.     ..
T Consensus        91 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~-----~~~~~~~~~~~~--------~~-----~~  152 (325)
T d1pgua1          91 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG-----RDNFGVFISWDS--------GN-----SL  152 (325)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC-----SSCSEEEEETTT--------CC-----EE
T ss_pred             EeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc-----ccceEEEEeecc--------cc-----cc
Confidence            555433221 1110         14567889999999999988742     244566666543        22     45


Q ss_pred             EEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeC---CCCCCcccceeEecCC-CEEEEEec
Q 039497          428 KILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQL---TDGPWIDTMPSWSPKG-DLIAFSSN  503 (642)
Q Consensus       428 ~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l---~~~~~~~~~~~~spdG-~~l~~~~~  503 (642)
                      ..+..+. ..+..+.|+|++.+++.+...++  .+.+|+..+++.   ...+   ......+..++|+||+ ++|+..+.
T Consensus       153 ~~~~~h~-~~v~~~~~~~~~~~~~~~~~~d~--~v~~~d~~~~~~---~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~  226 (325)
T d1pgua1         153 GEVSGHS-QRINACHLKQSRPMRSMTVGDDG--SVVFYQGPPFKF---SASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  226 (325)
T ss_dssp             EECCSCS-SCEEEEEECSSSSCEEEEEETTT--EEEEEETTTBEE---EEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             eeeeecc-cccccccccccccceEEEeeccc--cccccccccccc---ceecccccCCCCccEEeeeccccceecccccc
Confidence            5555555 67788999999988766554444  688889877664   2332   2333456778999985 65555555


Q ss_pred             CCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEc---CCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497          504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS---ADGEWLLFTANLGAVMAEPVSWPNQFQPYG  580 (642)
Q Consensus       504 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S---~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  580 (642)
                      ++.        |.+||+.+++...... ++..       .+..+.|+   +||++|+..+.++                 
T Consensus       227 d~~--------i~iwd~~~~~~~~~l~-~~~~-------~v~~~~~s~~~~dg~~l~s~s~D~-----------------  273 (325)
T d1pgua1         227 DRK--------ISCFDGKSGEFLKYIE-DDQE-------PVQGGIFALSWLDSQKFATVGADA-----------------  273 (325)
T ss_dssp             TCC--------EEEEETTTCCEEEECC-BTTB-------CCCSCEEEEEESSSSEEEEEETTS-----------------
T ss_pred             ccc--------eeeeeecccccccccc-cccc-------ccccceeeeeccCCCEEEEEeCCC-----------------
Confidence            553        9999998877654332 2222       33445555   7999988777654                 


Q ss_pred             cEEEEEcCCCce-eeccCC
Q 039497          581 DLYVVKLDGSGL-RRLTWN  598 (642)
Q Consensus       581 ~l~~~~~~~~~~-~~lt~~  598 (642)
                      .|.+||+..+++ +.++.+
T Consensus       274 ~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         274 TIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             EEEEEETTTTEEEEEEECC
T ss_pred             eEEEEECCCCCEEEEEEec
Confidence            688889887764 444443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=7.8e-11  Score=115.59  Aligned_cols=278  Identities=11%  Similarity=0.069  Sum_probs=155.3

Q ss_pred             cEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee-c-CC---CcceEeeCCeEEEEEecCCCceEEEEEecCCCc
Q 039497          152 KFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC-E-RG---GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENL  226 (642)
Q Consensus       152 ~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~-~~---~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~  226 (642)
                      +||+....++            .|.+||+++++...... . .+   ..++++|||+.+|+....++  .|+.+|..+++
T Consensus         2 ~~~vt~~~d~------------~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~--~v~v~D~~t~~   67 (337)
T d1pbyb_           2 DYILAPARPD------------KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE--SLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTT------------EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTT--EEEEEETTTCC
T ss_pred             eEEEEEcCCC------------EEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCC--eEEEEECCCCc
Confidence            3566666554            79999999988665443 2 22   25699999987766544455  68888888874


Q ss_pred             ccccCCccceeeCCC-----CCccccceeecCCcEEEEEEeccCC-------ceeeEEEEEeecCCCCcccCCeecCCCC
Q 039497          227 EFLGFPIAPTRVTPP-----GVHCFTPAAFHDGKRLAVATRRKNR-------NFRHIEIYDLTLNPNFHHYNPFVSANSE  294 (642)
Q Consensus       227 ~~~~~~~~~~~l~~~-----~~~~~~~~~SpdG~~l~~~~~~~~~-------~~~~i~~~d~~~~~~~~~~~~~~spDg~  294 (642)
                             ....+...     ......+++||||++++........       ....+.++|.                  
T Consensus        68 -------~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~------------------  122 (337)
T d1pbyb_          68 -------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA------------------  122 (337)
T ss_dssp             -------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET------------------
T ss_pred             -------EEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccc------------------
Confidence                   33333322     1234567899999998876432200       0011111111                  


Q ss_pred             EEEEEEeecCCCCCCcccceEeeccCCCceeEEe--eeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee-
Q 039497          295 FIGYHRFRGESTEGQSTIPHLEPVASPVKELRML--RLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK-  371 (642)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-  371 (642)
                                              ... ..+...  ........|+|||++++...     ..+.++|...++...... 
T Consensus       123 ------------------------~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~~~~~d~~~~~~~~~~~~  172 (337)
T d1pbyb_         123 ------------------------ETL-SRRKAFEAPRQITMLAWARDGSKLYGLG-----RDLHVMDPEAGTLVEDKPI  172 (337)
T ss_dssp             ------------------------TTT-EEEEEEECCSSCCCEEECTTSSCEEEES-----SSEEEEETTTTEEEEEECS
T ss_pred             ------------------------cCC-eEEEeccccCCceEEEEcCCCCEEEEEc-----CCcceeeeecCcEEEEeec
Confidence                                    000 000011  11223568999999887653     346677887776544433 


Q ss_pred             cCCceeeeeecCCCEEEEEEcC---------------CCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCC
Q 039497          372 DRTAFYNSWSPTEKHVIYTSTG---------------PIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETG  436 (642)
Q Consensus       372 ~~~~~~~~~spdg~~l~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  436 (642)
                      ........++|++..+......               ...........+..++.  .     .+..   ....+.... .
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~---~~~~~~~~~-~  241 (337)
T d1pbyb_         173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL--E-----TGEM---AMREVRIMD-V  241 (337)
T ss_dssp             TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET--T-----TCCE---EEEEEEECS-S
T ss_pred             CCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEc--C-----CCcE---EEEEecCCC-c
Confidence            2333344555555543222110               00000011112222222  1     1110   112222222 4


Q ss_pred             CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEE
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLY  516 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~  516 (642)
                      ......++|++++++...     ..|.+||+.+++.   +..+.. ......++|||||++||....++        .|.
T Consensus       242 ~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~~~---~~~~~~-~~~~~~~~~s~dG~~l~v~~~~~--------~i~  304 (337)
T d1pbyb_         242 FYFSTAVNPAKTRAFGAY-----NVLESFDLEKNAS---IKRVPL-PHSYYSVNVSTDGSTVWLGGALG--------DLA  304 (337)
T ss_dssp             CEEEEEECTTSSEEEEEE-----SEEEEEETTTTEE---EEEEEC-SSCCCEEEECTTSCEEEEESBSS--------EEE
T ss_pred             ceEEEEecccceEEEEcc-----ccEEEEECCCCcE---EEEEcC-CCCEEEEEECCCCCEEEEEeCCC--------cEE
Confidence            455678999999887654     3799999999886   455443 34567889999999998876544        399


Q ss_pred             EEeCCCCceE
Q 039497          517 VIKPDGSGLR  526 (642)
Q Consensus       517 ~~d~~~~~~~  526 (642)
                      +||+++.+..
T Consensus       305 v~D~~t~~~v  314 (337)
T d1pbyb_         305 AYDAETLEKK  314 (337)
T ss_dssp             EEETTTCCEE
T ss_pred             EEECCCCcEE
Confidence            9999886654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=2.3e-11  Score=121.91  Aligned_cols=296  Identities=10%  Similarity=-0.065  Sum_probs=163.0

Q ss_pred             eEeeCCeEE--EEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEecc-----CCcee
Q 039497          197 TWSGDSTIY--FHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRK-----NRNFR  269 (642)
Q Consensus       197 ~wspdg~~~--~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~-----~~~~~  269 (642)
                      +.++|++..  +.....+|..+||.+|..++        +.......++ ...++|||||++|++.....     +....
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~--------~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~~~~g~~d~   96 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGCG--------VTLGHSLGAF-LSLAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECT-TCEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCCCC--------cEEEEEeCCC-CCcceECCCCCEEEEEcccCccccccccCC
Confidence            556777433  22235567789999999988        3333333332 23588999999999976432     33455


Q ss_pred             eEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEec
Q 039497          270 HIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHD  349 (642)
Q Consensus       270 ~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  349 (642)
                      .|++||..+              ++.+........                . .  .........+.|||||++|++...
T Consensus        97 ~v~v~D~~t--------------~~~~~~i~~p~~----------------~-~--~~~g~~p~~~a~SpDGk~l~va~~  143 (368)
T d1mdah_          97 YVEVFDPVT--------------FLPIADIELPDA----------------P-R--FSVGPRVHIIGNCASSACLLFFLF  143 (368)
T ss_dssp             EEEEECTTT--------------CCEEEEEEETTS----------------C-S--CCBSCCTTSEEECTTSSCEEEEEC
T ss_pred             eEEEEECCC--------------CcEeeeecCCcc----------------c-e--ecccCCccceEECCCCCEEEEEeC
Confidence            688888722              222222211000                0 0  000111235689999999988653


Q ss_pred             CCCceeEEEEECCCCCeeEEeecC---------CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          350 FELNAGIKIAKSDGSKRWTLIKDR---------TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       350 ~~~~~~l~~~d~~~~~~~~l~~~~---------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                        ....++++|+.+++........         ....+.+++||+.+++....       .....+.. .          
T Consensus       144 --~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~-------~~~~~~~~-~----------  203 (368)
T d1mdah_         144 --GSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA-------APAAAGIV-G----------  203 (368)
T ss_dssp             --SSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCS-------SCCCCEEC-C----------
T ss_pred             --CCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecC-------Cceeeeee-e----------
Confidence              2467888999988765544311         12233445555544433211       11111100 0          


Q ss_pred             CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC-------------CCccc
Q 039497          421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG-------------PWIDT  487 (642)
Q Consensus       421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-------------~~~~~  487 (642)
                            ........ .......++++|..++ ...    ..++.++...++.    ..+...             +....
T Consensus       204 ------~~~~~~~~-~~~~~~~~~~~g~~~~-~~~----~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~  267 (368)
T d1mdah_         204 ------AQCTGAQN-CSSQAAQANYPGMLVW-AVA----SSILQGDIPAAGA----TMKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             ------CCSCTTSC-BCSCCEEETTTTEEEE-CBS----SCCEEEECCSSCC----EEECCCCSSCTHHHHTTEEECSSS
T ss_pred             ------cccccccc-cceeecccccCcEEEE-ecC----CCEEEEeecCCce----EEEeecccccceeeeeeecCCCce
Confidence                  00011111 2334567777775443 221    2567777765553    222211             11123


Q ss_pred             ceeEecCCCEEEEEecCCCC-CCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497          488 MPSWSPKGDLIAFSSNRHNP-DNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM  566 (642)
Q Consensus       488 ~~~~spdG~~l~~~~~~~~~-~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~  566 (642)
                      .++++|+++.+++....... ......+|+++|..+++.......+  .       .+..+.|||||+.++|.+....  
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~--~-------~~~~~a~spDG~~~ly~s~~~~--  336 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--H-------DSDAIIAAQDGASDNYANSAGT--  336 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--E-------EECEEEECCSSSCEEEEEETTT--
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC--C-------ceeEEEECCCCCEEEEEEeCCC--
Confidence            46899999988877544321 1224577999999988654332211  2       4567999999997766665543  


Q ss_pred             cCCCCCCCCCCCCCcEEEEEcCCCceee
Q 039497          567 AEPVSWPNQFQPYGDLYVVKLDGSGLRR  594 (642)
Q Consensus       567 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~  594 (642)
                                   ..|++||..+++..+
T Consensus       337 -------------~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         337 -------------EVLDIYDAASDQDQS  351 (368)
T ss_dssp             -------------TEEEEEESSSCEEEE
T ss_pred             -------------CeEEEEECCCCCEEE
Confidence                         279999998877543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.3e-10  Score=111.94  Aligned_cols=308  Identities=9%  Similarity=0.049  Sum_probs=171.0

Q ss_pred             eEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEe
Q 039497          197 TWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDL  276 (642)
Q Consensus       197 ~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~  276 (642)
                      ++++||+++++. +.||...||  +..+++       ....+..+...+..++++|+  .|+....++     .+.+|+.
T Consensus        22 ~~~~~g~~l~sg-s~Dg~i~vW--d~~~~~-------~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~-----~~~~~~~   84 (342)
T d2ovrb2          22 CLQFCGNRIVSG-SDDNTLKVW--SAVTGK-------CLRTLVGHTGGVWSSQMRDN--IIISGSTDR-----TLKVWNA   84 (342)
T ss_dssp             EEEEETTEEEEE-ETTSCEEEE--ETTTCC-------EEEECCCCSSCEEEEEEETT--EEEEEETTS-----CEEEEET
T ss_pred             EEEECCCEEEEE-eCCCeEEEE--ECCCCC-------EEEEEeCCCCCEEEEEeCCC--ccccceecc-----ccccccc
Confidence            588899888887 567855555  666663       44556666667777888765  566644433     6777776


Q ss_pred             ecCCCC------cccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC
Q 039497          277 TLNPNF------HHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF  350 (642)
Q Consensus       277 ~~~~~~------~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  350 (642)
                      ......      ...-.........+.....+.        ...+.......................+....++.... 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  155 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA--------TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY-  155 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTS--------EEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET-
T ss_pred             ccccceecccccceeEeeeecccccccccccce--------eEEEeecccccceeeeecccccceeeccccceeeeecC-
Confidence            211100      000000111111222111111        01111111111111111111122233444444544432 


Q ss_pred             CCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          351 ELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       351 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                        ...|.+++...................++++++.|+..+.       ++.+++|++..        ..     ....+
T Consensus       156 --d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-------dg~i~~~d~~~--------~~-----~~~~~  213 (342)
T d2ovrb2         156 --DFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSL-------DTSIRVWDVET--------GN-----CIHTL  213 (342)
T ss_dssp             --TSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEET-------TSCEEEEETTT--------CC-----EEEEE
T ss_pred             --CCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeC-------CCeEEEeeccc--------ce-----eeeEe
Confidence              3567777877665444433445556677889999887764       68899998754        22     34444


Q ss_pred             cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCC-cccceeEecCCCEEEEEecCCCCCC
Q 039497          431 TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPW-IDTMPSWSPKGDLIAFSSNRHNPDN  509 (642)
Q Consensus       431 ~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~-~~~~~~~spdG~~l~~~~~~~~~~~  509 (642)
                      ..+. ..+.  .+++++++|+..+.   ...|.+|+....+.   ...+..... ......+++++++++..+.++.   
T Consensus       214 ~~~~-~~v~--~~~~~~~~l~s~s~---d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~---  281 (342)
T d2ovrb2         214 TGHQ-SLTS--GMELKDNILVSGNA---DSTVKIWDIKTGQC---LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT---  281 (342)
T ss_dssp             CCCC-SCEE--EEEEETTEEEEEET---TSCEEEEETTTCCE---EEEECSTTSCSSCEEEEEECSSEEEEEETTSE---
T ss_pred             cccc-ccee--EEecCCCEEEEEcC---CCEEEEEecccccc---cccccccceeeeceeecccCCCeeEEEcCCCE---
Confidence            4443 3343  45556778877663   34799999987764   344443222 2223356667888888876654   


Q ss_pred             CCceeEEEEeCCCCceE-Eeeec---CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEE
Q 039497          510 VEAFSLYVIKPDGSGLR-RIHVA---GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV  585 (642)
Q Consensus       510 ~~~~~l~~~d~~~~~~~-~l~~~---~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  585 (642)
                           |.+||+.+++.. .+...   ++..       .+..++|+||+..|+..+.++..             ...|++|
T Consensus       282 -----i~iwd~~tg~~i~~~~~~~~~~~~~-------~v~~v~~s~~~~~la~g~~dGt~-------------~~~l~~~  336 (342)
T d2ovrb2         282 -----VKLWDLKTGEFIRNLVTLESGGSGG-------VVWRIRASNTKLVCAVGSRNGTE-------------ETKLLVL  336 (342)
T ss_dssp             -----EEEEETTTCCEEEEEEECTTGGGTC-------EEEEEEECSSEEEEEEECSSSSS-------------CCEEEEE
T ss_pred             -----EEEEECCCCCEEEEEecccCCCCCC-------CEEEEEECCCCCEEEEEeCCCCC-------------eeEEEEE
Confidence                 999999887653 33321   1222       57789999999877777666532             2379999


Q ss_pred             EcCC
Q 039497          586 KLDG  589 (642)
Q Consensus       586 ~~~~  589 (642)
                      |++-
T Consensus       337 Df~~  340 (342)
T d2ovrb2         337 DFDV  340 (342)
T ss_dssp             ECCC
T ss_pred             eCCC
Confidence            8764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=1e-09  Score=105.06  Aligned_cols=260  Identities=12%  Similarity=0.035  Sum_probs=151.6

Q ss_pred             ceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec---CCCCcccCCeecCCCCEEEEEEeecCCCCCCcc
Q 039497          235 PTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL---NPNFHHYNPFVSANSEFIGYHRFRGESTEGQST  311 (642)
Q Consensus       235 ~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  311 (642)
                      .+.+.++...+..++|+|    |+....+     ..+.+||+..   .+...+....+++++. ++....++.      .
T Consensus         6 i~~l~gH~~~I~~l~~s~----l~sgs~D-----g~v~~Wd~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~------v   69 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP----LISGSYD-----GRIMEWSSSSMHQDHSNLIVSLDNSKAQE-YSSISWDDT------L   69 (287)
T ss_dssp             EEEECCCSSCEEEEETTT----TEEEETT-----SCEEETTTTEEECCCCSCEEEEECCSTTC-CEEEETTTE------E
T ss_pred             eEEECCCCCceEEEEECc----EEEEeCC-----CeEEEEECCCCCCCCCCCEEEEEecCCCe-EEEEeeccc------c
Confidence            345667766777788876    5554433     3888998832   3333344455665543 333322221      1


Q ss_pred             cceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEE
Q 039497          312 IPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTS  391 (642)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~  391 (642)
                      .+|-....       ..........+++++..++...    ...+.+++...++...... .......++++++.+++..
T Consensus        70 ~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~  137 (287)
T d1pgua2          70 KVNGITKH-------EFGSQPKVASANNDGFTAVLTN----DDDLLILQSFTGDIIKSVR-LNSPGSAVSLSQNYVAVGL  137 (287)
T ss_dssp             EETTEEEE-------ECSSCEEEEEECSSSEEEEEET----TSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSEEEEEE
T ss_pred             cccccccc-------ccccceeeeeeccCCceEEEee----cccceeeeccceeeeeecc-ccceeeeeeccCcceeeec
Confidence            11211100       0000112346788887666533    3467788877776544433 2233457889999888887


Q ss_pred             cCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCc
Q 039497          392 TGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGE  471 (642)
Q Consensus       392 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~  471 (642)
                      .      +...+++|++..        ..     ....+.......+..++|+|||++|+..+..   ..|.+||+.+++
T Consensus       138 ~------~~~~v~~~~~~~--------~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~  195 (287)
T d1pgua2         138 E------EGNTIQVFKLSD--------LE-----VSFDLKTPLRAKPSYISISPSETYIAAGDVM---GKILLYDLQSRE  195 (287)
T ss_dssp             T------TTSCEEEEETTE--------EE-----EEEECSSCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTE
T ss_pred             c------ccceeeeeeccc--------cc-----eeeeeeeccCCceeEEEeccCcccccccccc---ccccceeecccc
Confidence            3      345688888643        11     2223322222457788999999999877643   379999998876


Q ss_pred             cccceee-CCCCCCcccceeEecCC----------CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcc
Q 039497          472 FNGDIRQ-LTDGPWIDTMPSWSPKG----------DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVD  540 (642)
Q Consensus       472 ~~~~~~~-l~~~~~~~~~~~~spdG----------~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  540 (642)
                      .   ... +..+...+..++|+|++          .+|+..+.++.        |++||+...........++..     
T Consensus       196 ~---~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~--------i~iw~~~~~~~~~~~~~~h~~-----  259 (287)
T d1pgua2         196 V---KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN--------IFIYSVKRPMKIIKALNAHKD-----  259 (287)
T ss_dssp             E---EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC--------EEEEESSCTTCCEEETTSSTT-----
T ss_pred             c---ccccccccccccceeeecccccccccccCCCCeeEeecCCCe--------EEEEECCCCCeEEEEeCCCCC-----
Confidence            4   222 33445566777888755          45665555543        999998664322222234444     


Q ss_pred             cccccceEEcCCCCEEEEEEecC
Q 039497          541 RERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       541 ~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                        .+..+.|++|++ |+..+.++
T Consensus       260 --~V~~v~~~~~~~-l~s~g~D~  279 (287)
T d1pgua2         260 --GVNNLLWETPST-LVSSGADA  279 (287)
T ss_dssp             --CEEEEEEEETTE-EEEEETTS
T ss_pred             --CeEEEEECCCCE-EEEEECCC
Confidence              678999999974 66555554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=3.4e-09  Score=103.15  Aligned_cols=282  Identities=9%  Similarity=0.013  Sum_probs=152.7

Q ss_pred             CCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCce-eEee--cCC---CcceEeeCC-eEEEEEecC
Q 039497          139 GVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKR-VIVC--ERG---GWPTWSGDS-TIYFHRQAD  211 (642)
Q Consensus       139 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~l~~--~~~---~~~~wspdg-~~~~~~~~~  211 (642)
                      .......+|||||++||.++.++            .|.+|++..+... .+..  .+.   ..++|+|++ .++++. ..
T Consensus        11 ~d~I~~l~fsp~~~~L~s~s~Dg------------~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg-~~   77 (342)
T d1yfqa_          11 KDYISDIKIIPSKSLLLITSWDG------------SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG-TV   77 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTS------------EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE-ET
T ss_pred             CCCEEEEEEeCCCCEEEEEECCC------------eEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEc-cc
Confidence            33456789999999999988766            7889998876542 2221  222   245899986 566665 56


Q ss_pred             CCceEEEEEecCCCcccccCCccceeeCCC-CCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeec
Q 039497          212 DGWWSIFRVSFPENLEFLGFPIAPTRVTPP-GVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVS  290 (642)
Q Consensus       212 ~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~s  290 (642)
                      +|...+|  +.....       ........ ........+.+++..++......     .+.+||+.......       
T Consensus        78 d~~v~~w--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~wd~~~~~~~~-------  136 (342)
T d1yfqa_          78 QGEILKV--DLIGSP-------SFQALTNNEANLGICRICKYGDDKLIAASWDG-----LIEVIDPRNYGDGV-------  136 (342)
T ss_dssp             TSCEEEE--CSSSSS-------SEEECBSCCCCSCEEEEEEETTTEEEEEETTS-----EEEEECHHHHTTBC-------
T ss_pred             ccceeee--eccccc-------cccccccccccccccccccccccccccccccc-----ccceeeccccccce-------
Confidence            7755554  444442       22222222 22222233456667666644433     77888873211000       


Q ss_pred             CCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEE-
Q 039497          291 ANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTL-  369 (642)
Q Consensus       291 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l-  369 (642)
                           ...                 ........     ........+.++++.++....   ...|.++++........ 
T Consensus       137 -----~~~-----------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~~~~~~  186 (342)
T d1yfqa_         137 -----IAV-----------------KNLNSNNT-----KVKNKIFTMDTNSSRLIVGMN---NSQVQWFRLPLCEDDNGT  186 (342)
T ss_dssp             -----EEE-----------------EESCSSSS-----SSCCCEEEEEECSSEEEEEES---TTEEEEEESSCCTTCCCE
T ss_pred             -----eee-----------------cccccccc-----cceeeeeeeeccCCceeeecC---CCcEEEEecccCccccee
Confidence                 000                 00000000     001112345667776666543   35677777765543221 


Q ss_pred             -ee---cCCceeeee-ecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc------cc--cCCC
Q 039497          370 -IK---DRTAFYNSW-SPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL------TK--EETG  436 (642)
Q Consensus       370 -~~---~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l------~~--~~~~  436 (642)
                       ..   ........+ +.++..++..+.       ++.+.+|.++.  ........     ....+      ..  ....
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------dg~~~v~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  252 (342)
T d1yfqa_         187 IEESGLKYQIRDVALLPKEQEGYACSSI-------DGRVAVEFFDD--QGDDYNSS-----KRFAFRCHRLNLKDTNLAY  252 (342)
T ss_dssp             EEECSCSSCEEEEEECSGGGCEEEEEET-------TSEEEEEECCT--TCCSTTCT-----TCEEEECCCCCTTCCSSCC
T ss_pred             eeecccccceeeeEeecCCCCEEEeecC-------CCeEEEEEecC--Ccceeecc-----ccceeeeeeeccCCCcccc
Confidence             11   222333333 445666665553       67777777654  11100000     00110      00  0112


Q ss_pred             CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCC
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRH  505 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  505 (642)
                      .+..++|+|++++|+..+.+   ..|.+||+++++.   +..+... ......+|+|+|+.|++++.++
T Consensus       253 ~v~~l~~sp~~~~lasg~~D---g~v~vWD~~~~~~---l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         253 PVNSIEFSPRHKFLYTAGSD---GIISCWNLQTRKK---IKNFAKF-NEDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             CEEEEEECTTTCCEEEEETT---SCEEEEETTTTEE---EEECCCC-SSSEEEEEEECSSEEEEEEECT
T ss_pred             cceeEEecCCccEEEEECCC---CEEEEEECCCCcE---EEEecCC-CCCEEEEEEeCCCEEEEEEcCC
Confidence            34568999999999877743   4799999998876   5666543 2344578999999999887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.18  E-value=2.2e-08  Score=99.36  Aligned_cols=164  Identities=12%  Similarity=0.083  Sum_probs=90.9

Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc-cccCCCCccCcEECCCCCeEEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL-TKEETGNNAFPSCSPDGKFLVF  452 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~SpDg~~l~~  452 (642)
                      .++.+.|+|||++|+....      +...+.++.++.  +      +.. . ....+ .........+++|+|||++++.
T Consensus       146 h~h~v~~sPdG~~l~v~d~------g~d~v~~~~~~~--~------g~~-~-~~~~~~~~~~g~gPr~i~f~pdg~~~yv  209 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADL------TANKLWTHRKLA--S------GEV-E-LVGSVDAPDPGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             CEEEEEECTTSSEEEEEET------TTTEEEEEEECT--T------SCE-E-EEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             cceEEEECCCCCEEEEeeC------CCCEEEEEEccC--C------Cce-e-eccceeecCCCCceEEEEECCCCceEEE
Confidence            4678999999999998874      356777777654  2      210 0 11111 1111135677899999998888


Q ss_pred             EeCCCCceeEEEEECCCCccccceee-----CCCC------------CCcccceeEecCCCEEEEEecCCCCCCCCceeE
Q 039497          453 RSGRSGHKNLFVLDAVNGEFNGDIRQ-----LTDG------------PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSL  515 (642)
Q Consensus       453 ~~~~~g~~~l~~~d~~~g~~~~~~~~-----l~~~------------~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l  515 (642)
                      ....++  +|..++.++++.. ....     +...            ......+.++|||++|+........  .....|
T Consensus       210 ~~e~~~--~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~--~~~~~i  284 (365)
T d1jofa_         210 LMEAGN--RICEYVIDPATHM-PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF--ELQGYI  284 (365)
T ss_dssp             EETTTT--EEEEEEECTTTCC-EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST--TSCCEE
T ss_pred             eccCCC--EEEEEEecCCCce-EEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCC--ccceEE
Confidence            776544  6666666544320 0111     1110            0112346899999998887653221  122334


Q ss_pred             EEEeCCC-CceEE-e--eecCCCCCCCcccccccceEEcC-CCCEEEEEEecCC
Q 039497          516 YVIKPDG-SGLRR-I--HVAGPEGSGDVDRERINHVCFSA-DGEWLLFTANLGA  564 (642)
Q Consensus       516 ~~~d~~~-~~~~~-l--~~~~~~~~~~~~~~~~~~~~~S~-Dg~~l~~~~~~~~  564 (642)
                      ..++++. +.... .  ......+      .....++++| ||++|+++....+
T Consensus       285 ~~~~~~~~g~~~~~~~~~~~~~~G------~~p~~i~~~p~~G~~l~va~~~s~  332 (365)
T d1jofa_         285 AGFKLRDCGSIEKQLFLSPTPTSG------GHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             EEEEECTTSCEEEEEEEEECSSCC------TTCCCEEECTTCTTEEEEECSSSC
T ss_pred             EEEEecCCCceeeEeEeeEEEcCC------CCccEEEecCCCCCEEEEEeCCCC
Confidence            4444432 22221 1  1111111      1456789998 8999988865543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=7.2e-09  Score=104.23  Aligned_cols=144  Identities=10%  Similarity=0.033  Sum_probs=98.5

Q ss_pred             CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceee------CCCCCCcccceeEecCCCEEEEEecCCCCCCC
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQ------LTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNV  510 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~------l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~  510 (642)
                      ....+.||||| +|+. ...+  ..|.+||+.+++.   +..      +..+...+..++|||||++|+..+.+.     
T Consensus       186 ~~~~v~~s~dg-~las-gs~D--g~i~iwd~~~~~~---~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~-----  253 (393)
T d1sq9a_         186 FATSVDISERG-LIAT-GFNN--GTVQISELSTLRP---LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-----  253 (393)
T ss_dssp             CCCEEEECTTS-EEEE-ECTT--SEEEEEETTTTEE---EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-----
T ss_pred             cEEEEEECCCC-EEEE-EeCC--CcEEEEeeccccc---ccccccccccccccceEEEcccccccceeeeecCCC-----
Confidence            34568999998 5544 3333  4799999998874   332      233455678889999999998888764     


Q ss_pred             CceeEEEEeCCCCceEEeeec------------CCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCC
Q 039497          511 EAFSLYVIKPDGSGLRRIHVA------------GPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQP  578 (642)
Q Consensus       511 ~~~~l~~~d~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~  578 (642)
                      ....|.+||+.+++.......            ++..       .+..++|||||++|+..+.++               
T Consensus       254 t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-------~V~~l~fspd~~~l~S~s~D~---------------  311 (393)
T d1sq9a_         254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-------WVMSLSFNDSGETLCSAGWDG---------------  311 (393)
T ss_dssp             TEEEEEEEETTTCCEEEEECBC--------CCBSBSS-------CEEEEEECSSSSEEEEEETTS---------------
T ss_pred             CcceeeecccccceeeeeeccccccccceeeeecccC-------ceeeeccCCCCCeeEEECCCC---------------
Confidence            234588899988765443221            2222       578899999999988777664               


Q ss_pred             CCcEEEEEcCCCc-eeeccCCCCCC----CCcEEecCCceEEe
Q 039497          579 YGDLYVVKLDGSG-LRRLTWNGYEN----GTPAWHPGNQLDLG  616 (642)
Q Consensus       579 ~~~l~~~~~~~~~-~~~lt~~~~~~----~~~~~s~dg~~~~~  616 (642)
                        .|.+||+.+++ +..|..+...+    ..++|++++..+++
T Consensus       312 --~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~  352 (393)
T d1sq9a_         312 --KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE  352 (393)
T ss_dssp             --EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred             --EEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEE
Confidence              78888988776 44555554333    35788998876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.14  E-value=8.7e-08  Score=94.91  Aligned_cols=275  Identities=10%  Similarity=0.026  Sum_probs=138.7

Q ss_pred             CcceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeC-CCCCccccceeecCCcEEEEEEeccCCceeeEE
Q 039497          194 GWPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT-PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIE  272 (642)
Q Consensus       194 ~~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~  272 (642)
                      .+++++||++.+|+..  .+....|.++.+++.        ..... ..+.....+.+++||+.+++.....+  ...+.
T Consensus        43 s~la~s~d~~~ly~~~--~~~~~~~~i~~~~~~--------~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~--~~~v~  110 (365)
T d1jofa_          43 SWMTFDHERKNIYGAA--MKKWSSFAVKSPTEI--------VHEASHPIGGHPRANDADTNTRAIFLLAAKQP--PYAVY  110 (365)
T ss_dssp             SEEEECTTSSEEEEEE--BTEEEEEEEEETTEE--------EEEEEEECCSSGGGGCTTSCCEEEEEEECSST--TCCEE
T ss_pred             CEEEEcCCCCEEEEEe--CCcEEEEEEeCCCCe--------EEEeeecCCCCcEEEEECCCCCEEEEEEecCC--CCEEE
Confidence            3578899998887763  356788888877652        22221 22334556788999997766443221  11222


Q ss_pred             EEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCC
Q 039497          273 IYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFEL  352 (642)
Q Consensus       273 ~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  352 (642)
                      .+.             +.+++.............    ............      ........|+|||++++...  .+
T Consensus       111 ~~~-------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~q~------~~h~h~v~~sPdG~~l~v~d--~g  165 (365)
T d1jofa_         111 ANP-------------FYKFAGYGNVFSVSETGK----LEKNVQNYEYQE------NTGIHGMVFDPTETYLYSAD--LT  165 (365)
T ss_dssp             EEE-------------ESSSCCEEEEEEECTTCC----EEEEEEEEECCT------TCCEEEEEECTTSSEEEEEE--TT
T ss_pred             EeE-------------ccCCCCcceeEeeeecce----ecCcccCcccCC------CCcceEEEECCCCCEEEEee--CC
Confidence            222             223333322221111100    000000000000      00012468999999887765  34


Q ss_pred             ceeEEEEECCCC-CeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcccc
Q 039497          353 NAGIKIAKSDGS-KRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC  425 (642)
Q Consensus       353 ~~~l~~~d~~~~-~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  425 (642)
                      ...|++++.+.. .......      .....+++|+|||+++++...      ....+.+|+++.  .      ......
T Consensus       166 ~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e------~~~~V~v~~~~~--~------~~~~~~  231 (365)
T d1jofa_         166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME------AGNRICEYVIDP--A------THMPVY  231 (365)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET------TTTEEEEEEECT--T------TCCEEE
T ss_pred             CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc------CCCEEEEEEecC--C------CceEEE
Confidence            456777765433 2222211      345778999999998888773      467788888754  1      110000


Q ss_pred             ceEEc--ccc-----------CCCCccCcEECCCCCeEEEEeCCC---CceeEEEEECCC-CccccceeeC---CCCCCc
Q 039497          426 DVKIL--TKE-----------ETGNNAFPSCSPDGKFLVFRSGRS---GHKNLFVLDAVN-GEFNGDIRQL---TDGPWI  485 (642)
Q Consensus       426 ~~~~l--~~~-----------~~~~~~~~~~SpDg~~l~~~~~~~---g~~~l~~~d~~~-g~~~~~~~~l---~~~~~~  485 (642)
                      ....+  ...           .......+.+||||++|+.+...+   ....|..+.+.. |.. .....+   ......
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~-~~~~~~~~~~~~G~~  310 (365)
T d1jofa_         232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI-EKQLFLSPTPTSGGH  310 (365)
T ss_dssp             EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-EEEEEEEECSSCCTT
T ss_pred             EeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCce-eeEeEeeEEEcCCCC
Confidence            00111  000           001223578999999987764321   122355555432 321 000111   111123


Q ss_pred             ccceeEec-CCCEEEEEecCCCCCCCCceeEEEEeCCCCceEE
Q 039497          486 DTMPSWSP-KGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRR  527 (642)
Q Consensus       486 ~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  527 (642)
                      ...++++| +|++|+.+....     +.  |.+++++......
T Consensus       311 p~~i~~~p~~G~~l~va~~~s-----~~--v~v~~~~~~~l~~  346 (365)
T d1jofa_         311 SNAVSPCPWSDEWMAITDDQE-----GW--LEIYRWKDEFLHR  346 (365)
T ss_dssp             CCCEEECTTCTTEEEEECSSS-----CE--EEEEEEETTEEEE
T ss_pred             ccEEEecCCCCCEEEEEeCCC-----Ce--EEEEEEeCCcCcE
Confidence            45678998 899988887654     23  5555554444433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.13  E-value=4.1e-10  Score=112.47  Aligned_cols=297  Identities=10%  Similarity=0.000  Sum_probs=155.2

Q ss_pred             eeCCeEEEEEecCCCceEEEEEecCCCcccccCCcccee-eCC-CCCccccceeecCCcEEEEEEeccC-----------
Q 039497          199 SGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTR-VTP-PGVHCFTPAAFHDGKRLAVATRRKN-----------  265 (642)
Q Consensus       199 spdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~-l~~-~~~~~~~~~~SpdG~~l~~~~~~~~-----------  265 (642)
                      +|||+.+|+.+..++  .|.++++++.        +..+ +.- .+.....++++|||+++++......           
T Consensus        80 tpDGr~lfV~d~~~~--rVavIDl~t~--------k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          80 RYDGKYLFINDKANT--RVARIRLDIM--------KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             EEEEEEEEEEETTTT--EEEEEETTTT--------EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCCEEEEEcCCCC--EEEEEECCCC--------cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            689998888754344  7888999887        3333 322 2334566889999997765432211           


Q ss_pred             ---CceeeEEEEEeecC-------CCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCC-CceeEEeeeCCCc
Q 039497          266 ---RNFRHIEIYDLTLN-------PNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASP-VKELRMLRLNGSF  334 (642)
Q Consensus       266 ---~~~~~i~~~d~~~~-------~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  334 (642)
                         .....+..+|....       .........++|||+++++.....+..      ..+...... ...+... .....
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~------~~id~~t~~~~d~i~v~-n~p~~  222 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERA------VDLAGTMRNDRDWVVVF-NVERI  222 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCC------SSHHHHTCSSBCEEEEE-EHHHH
T ss_pred             ccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCce------EEEeccCcceEEEEEeC-Cccce
Confidence               01112233443211       123456788999999988876544321      111111111 1122111 11134


Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCCCCee-EEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRW-TLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      ..++|||+++..    .+...+.+......... .+........+.+||||++++....      .+..+.+|+++.-.+
T Consensus       223 ~~~~~dGk~~~v----~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~------~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         223 AAAVKAGNFKTI----GDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGK------LSPTVSVIAIDKLDD  292 (441)
T ss_dssp             HHHHHTTCCBCC----TTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECT------TSSBEEEEEGGGHHH
T ss_pred             EEEecCCCEEEe----CCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCC------cCCcEEEEEeehhhh
Confidence            467899996544    22233333334444433 3333666888999999999888763      478888888743000


Q ss_pred             CCCCCCCCccccceEEccccC--CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC------Cccccc-eeeCC----
Q 039497          414 PSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN------GEFNGD-IRQLT----  480 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~------g~~~~~-~~~l~----  480 (642)
                        ...+...   ....+....  .....+-+|+++|.  +|++.. -..+|.+|++..      |..+.. +..+.    
T Consensus       293 --~~~~~~~---~~~~~~~~~~~glgplh~~fd~~g~--~yts~~-~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~  364 (441)
T d1qnia2         293 --LFEDKIE---LRDTIVAEPELGLGPLHTTFDGRGN--AYTTLF-IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQ  364 (441)
T ss_dssp             --HTTTSSC---GGGGEEECCBCCSCEEEEEECSSSE--EEEEET-TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC
T ss_pred             --HhhccCC---cceEEEeecccccCcccceecCCce--EEEccc-ccceEEEeccchhhhhhccCCCceeEeccccccC
Confidence              0000000   001111111  01223447888874  444432 335899999742      111000 11121    


Q ss_pred             -CCCCcccceeEecCCCEEEEEecCCCCC-----CCCceeEEEEeCCCCceEEeee
Q 039497          481 -DGPWIDTMPSWSPKGDLIAFSSNRHNPD-----NVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       481 -~~~~~~~~~~~spdG~~l~~~~~~~~~~-----~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                       .+.......+++|||++|+..+.-...+     -.....--++|+.+.+.+.|..
T Consensus       365 ~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~~~  420 (441)
T d1qnia2         365 PGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLVHD  420 (441)
T ss_dssp             EEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEEEE
T ss_pred             CCCCccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEecCCeEEEEec
Confidence             1112233457999999999885532210     0122345678888888777764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=1.6e-09  Score=105.62  Aligned_cols=272  Identities=7%  Similarity=-0.028  Sum_probs=146.7

Q ss_pred             eCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeec-----------CCCCcccCCeecCCCCEEEEEE-eecCC
Q 039497          238 VTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTL-----------NPNFHHYNPFVSANSEFIGYHR-FRGES  305 (642)
Q Consensus       238 l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~-----------~~~~~~~~~~~spDg~~l~~~~-~~~~~  305 (642)
                      +..+...+..++|||||++|+.+..++     .|++||+..           .+...+...+|+|++..+++.. .++. 
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg-----~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~-   80 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDG-----SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE-   80 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTS-----EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC-
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCC-----eEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc-
Confidence            345555788999999999999866544     899999832           2455566778999877655543 2222 


Q ss_pred             CCCCcccceEeeccCCCceeEEeeeCC---CccEEcCCCCEEEEEecCCCceeEEEEECCCCCe--eEEee------cCC
Q 039497          306 TEGQSTIPHLEPVASPVKELRMLRLNG---SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR--WTLIK------DRT  374 (642)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~--~~l~~------~~~  374 (642)
                           ..+|  ................   ....+.+++..++....   ...+.++|+.....  .....      ...
T Consensus        81 -----v~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T d1yfqa_          81 -----ILKV--DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW---DGLIEVIDPRNYGDGVIAVKNLNSNNTKVK  150 (342)
T ss_dssp             -----EEEE--CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET---TSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred             -----eeee--eccccccccccccccccccccccccccccccccccc---ccccceeeccccccceeeecccccccccce
Confidence                 2222  2222211111111111   12234556666665543   35566666543322  11111      122


Q ss_pred             ceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcE-ECCCCCeEEEE
Q 039497          375 AFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPS-CSPDGKFLVFR  453 (642)
Q Consensus       375 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~SpDg~~l~~~  453 (642)
                      .....+.+++..++....       ++.+.+|++..  .      ... . ......... ....... ++.++..++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~-------d~~i~~~~~~~--~------~~~-~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  212 (342)
T d1yfqa_         151 NKIFTMDTNSSRLIVGMN-------NSQVQWFRLPL--C------EDD-N-GTIEESGLK-YQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             CCEEEEEECSSEEEEEES-------TTEEEEEESSC--C------TTC-C-CEEEECSCS-SCEEEEEECSGGGCEEEEE
T ss_pred             eeeeeeeccCCceeeecC-------CCcEEEEeccc--C------ccc-c-eeeeecccc-cceeeeEeecCCCCEEEee
Confidence            334567788888887764       67888998755  1      110 0 111111111 1222233 34455555555


Q ss_pred             eCCCCceeEEEEECCCCccc---c---ce------eeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          454 SGRSGHKNLFVLDAVNGEFN---G---DI------RQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~~g~~~---~---~~------~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      + .++  .+.+++.......   .   ..      .....+...+..++|+|++++|+..+.++.        |++||++
T Consensus       213 s-~dg--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~--------v~vWD~~  281 (342)
T d1yfqa_         213 S-IDG--RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI--------ISCWNLQ  281 (342)
T ss_dssp             E-TTS--EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC--------EEEEETT
T ss_pred             c-CCC--eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE--------EEEEECC
Confidence            4 334  4555554432210   0   00      001112223456799999999988887765        9999998


Q ss_pred             CCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecC
Q 039497          522 GSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLG  563 (642)
Q Consensus       522 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~  563 (642)
                      +++...-....  .       .....+|+|+|+.|++.+.+.
T Consensus       282 ~~~~l~~~~~~--~-------~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         282 TRKKIKNFAKF--N-------EDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             TTEEEEECCCC--S-------SSEEEEEEECSSEEEEEEECT
T ss_pred             CCcEEEEecCC--C-------CCEEEEEEeCCCEEEEEEcCC
Confidence            77543222111  1       235688999999998877664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-07  Score=89.66  Aligned_cols=267  Identities=11%  Similarity=0.078  Sum_probs=144.9

Q ss_pred             eeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC-cceEeeCCeEEEEEecCCCceEEEEEecCC
Q 039497          146 SVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG-WPTWSGDSTIYFHRQADDGWWSIFRVSFPE  224 (642)
Q Consensus       146 ~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~wspdg~~~~~~~~~~g~~~l~~~~~~~  224 (642)
                      .+++||++||..+.++            .|.+|++.+++..+....+.. ..+.+++++++++. ..++...+|.  ...
T Consensus        20 c~~~d~~~l~sgs~Dg------------~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~-s~D~~i~~~~--~~~   84 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDN------------TIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG-SSDSTVRVWD--VNT   84 (293)
T ss_dssp             EEECCSSEEEEEESSS------------CEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEE-ETTSCEEEEE--SSS
T ss_pred             EEEEcCCEEEEEeCCC------------eEEEEECCCCcEEEEEecCCCCEeeeecccceeecc-cccccccccc--ccc
Confidence            4788999999988766            689999999887766654443 34677788888877 5678555554  444


Q ss_pred             CcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecC
Q 039497          225 NLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGE  304 (642)
Q Consensus       225 ~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~  304 (642)
                      +.       .........  .....+.+....++......     .+.+|+.......                      
T Consensus        85 ~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------------  128 (293)
T d1p22a2          85 GE-------MLNTLIHHC--EAVLHLRFNNGMMVTCSKDR-----SIAVWDMASPTDI----------------------  128 (293)
T ss_dssp             CC-------EEEEECCCC--SCEEEEECCTTEEEEEETTS-----CEEEEECSSSSCC----------------------
T ss_pred             cc-------ccccccccc--cccccccccccceeeccccc-----ceeEeeccccccc----------------------
Confidence            41       222222222  11223344555555543332     5556665221100                      


Q ss_pred             CCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCC
Q 039497          305 STEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTE  384 (642)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg  384 (642)
                              ............         .....+....++..+.   ...|.++++..++..............+++++
T Consensus       129 --------~~~~~~~~~~~~---------v~~~~~~~~~~~~~s~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  188 (293)
T d1p22a2         129 --------TLRRVLVGHRAA---------VNVVDFDDKYIVSASG---DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD  188 (293)
T ss_dssp             --------EEEEEECCCSSC---------EEEEEEETTEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEEET
T ss_pred             --------cccccccccccc---------cccceecccccccccC---CCceeeecCCCCcEEEEEcccccccccccCCC
Confidence                    000000000000         0112223343444332   35688888887765444332222333445567


Q ss_pred             CEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEE
Q 039497          385 KHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFV  464 (642)
Q Consensus       385 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~  464 (642)
                      ..++....       ++.+++|++..        ..     ......... ..  ...+++++++|+..+.   ...|.+
T Consensus       189 ~~l~~~~~-------dg~i~i~d~~~--------~~-----~~~~~~~~~-~~--v~~~~~~~~~l~sg~~---dg~i~i  242 (293)
T d1p22a2         189 RLVVSGSS-------DNTIRLWDIEC--------GA-----CLRVLEGHE-EL--VRCIRFDNKRIVSGAY---DGKIKV  242 (293)
T ss_dssp             TEEEEEET-------TSCEEEEETTT--------CC-----EEEEECCCS-SC--EEEEECCSSEEEEEET---TSCEEE
T ss_pred             CeEEEecC-------CCEEEEEeccc--------ce-----eeeeecccc-ee--eeeccccceEEEEEcC---CCEEEE
Confidence            77777663       67899998754        11     233333222 22  2367888888877663   237888


Q ss_pred             EECCCCccc------cceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEe
Q 039497          465 LDAVNGEFN------GDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIK  519 (642)
Q Consensus       465 ~d~~~g~~~------~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d  519 (642)
                      ||+.++...      ..+..+..+...+..++|  |+++|+..+.++.        |.+||
T Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~--------i~iWD  293 (293)
T d1p22a2         243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT--------ILIWD  293 (293)
T ss_dssp             EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE--------EEEEC
T ss_pred             EECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCE--------EEEeC
Confidence            887543210      113445555556666666  5677776666543        78876

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=1.2e-08  Score=97.45  Aligned_cols=276  Identities=9%  Similarity=0.005  Sum_probs=145.2

Q ss_pred             eeeecCCceeeeeceecCCCCCeEEEEEccCCCcceEEEcCCCCcccccCCCCCCcccccccc-CCCEEEEEEeccCCCc
Q 039497           36 EHRLTDGTSINFNAQFVDGQDQTIAFISERSGSPRIYQTRPGSSKTELLPSIPCSLFHDRPVA-RNNKLFFISAHEQPDQ  114 (642)
Q Consensus        36 ~~rlt~~~~~~~~~~~S~pDG~~laf~~~~~g~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~  114 (642)
                      .+.|.+|........|+ |    |+ ++..||...+|......    .... ..+.   ...+ +++.++- ...+..  
T Consensus         6 i~~l~gH~~~I~~l~~s-~----l~-sgs~Dg~v~~Wd~~~~~----~~h~-~~V~---~~~~~~~~~~~s-~s~D~~--   68 (287)
T d1pgua2           6 LKTISGHNKGITALTVN-P----LI-SGSYDGRIMEWSSSSMH----QDHS-NLIV---SLDNSKAQEYSS-ISWDDT--   68 (287)
T ss_dssp             EEEECCCSSCEEEEETT-T----TE-EEETTSCEEETTTTEEE----CCCC-SCEE---EEECCSTTCCEE-EETTTE--
T ss_pred             eEEECCCCCceEEEEEC-c----EE-EEeCCCeEEEEECCCCC----CCCC-CCEE---EEEecCCCeEEE-Eeeccc--
Confidence            46788999999999999 7    44 67778998888652111    0000 0000   1112 3333322 222210  


Q ss_pred             ccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC
Q 039497          115 IFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG  194 (642)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~  194 (642)
                           ..+|.+.  .   ..+   ........++++|..++.....             .+.+++...++..+.......
T Consensus        69 -----v~~w~~~--~---~~~---~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~  122 (287)
T d1pgua2          69 -----LKVNGIT--K---HEF---GSQPKVASANNDGFTAVLTNDD-------------DLLILQSFTGDIIKSVRLNSP  122 (287)
T ss_dssp             -----EEETTEE--E---EEC---SSCEEEEEECSSSEEEEEETTS-------------EEEEEETTTCCEEEEEECSSC
T ss_pred             -----ccccccc--c---ccc---ccceeeeeeccCCceEEEeecc-------------cceeeeccceeeeeeccccce
Confidence                 1233221  1   111   1112335678999888765432             477888888776555444444


Q ss_pred             cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeC-CCCCccccceeecCCcEEEEEEeccCCceeeEEE
Q 039497          195 WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVT-PPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEI  273 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~  273 (642)
                      ..++++++..+++....++...+|.+  ....       ....+. .....+..++|+|||++|+....++     .+.+
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~--~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-----~i~i  188 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKL--SDLE-------VSFDLKTPLRAKPSYISISPSETYIAAGDVMG-----KILL  188 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEET--TEEE-------EEEECSSCCSSCEEEEEECTTSSEEEEEETTS-----CEEE
T ss_pred             eeeeeccCcceeeeccccceeeeeec--cccc-------eeeeeeeccCCceeEEEeccCccccccccccc-----cccc
Confidence            45788888766666444444566654  3221       122222 2344567789999999998865444     7889


Q ss_pred             EEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecCCCc
Q 039497          274 YDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDFELN  353 (642)
Q Consensus       274 ~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  353 (642)
                      ||+....              . ......+-              ......+...+.........+++++++..+.   .
T Consensus       189 ~d~~~~~--------------~-~~~~~~~h--------------~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~---D  236 (287)
T d1pgua2         189 YDLQSRE--------------V-KTSRWAFR--------------TSKINAISWKPAEKGANEEEIEEDLVATGSL---D  236 (287)
T ss_dssp             EETTTTE--------------E-EECCSCCC--------------SSCEEEEEECCCC------CCSCCEEEEEET---T
T ss_pred             eeecccc--------------c-cccccccc--------------ccccceeeecccccccccccCCCCeeEeecC---C
Confidence            9872211              0 00000000              0000000000001112234556666665443   3


Q ss_pred             eeEEEEECCCCC-eeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          354 AGIKIAKSDGSK-RWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       354 ~~l~~~d~~~~~-~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      ..|+++++.... ......  ...+..+.|+|+++ |+.++       .++.+++|++
T Consensus       237 ~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g-------~D~~v~iW~i  286 (287)
T d1pgua2         237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG-------ADACIKRWNV  286 (287)
T ss_dssp             SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE-------TTSCEEEEEE
T ss_pred             CeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEE-------CCCeEEEEEE
Confidence            568888886533 222222  55788999999874 55555       3789999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=2.9e-08  Score=99.66  Aligned_cols=138  Identities=15%  Similarity=0.080  Sum_probs=92.9

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQI  405 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l  405 (642)
                      ...|+||| .|+..+   ....|.++|+.+++......        ...+..++|+|||+.|+..+..    .....+++
T Consensus       189 ~v~~s~dg-~lasgs---~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D----~t~~~i~l  260 (393)
T d1sq9a_         189 SVDISERG-LIATGF---NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS----NSFGCITL  260 (393)
T ss_dssp             EEEECTTS-EEEEEC---TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE----TTEEEEEE
T ss_pred             EEEECCCC-EEEEEe---CCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCC----CCcceeee
Confidence            46889998 454432   34678888998876533222        3467889999999999988742    11134777


Q ss_pred             EEEEeecCCCCCCCCCccccceEEc-------------cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCcc
Q 039497          406 ARVSFQLDPSDDNNREEIPCDVKIL-------------TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEF  472 (642)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~  472 (642)
                      |++..        +.     ....+             ..+. ..+..++|||||++|+..+.   +..|.+||+++|+.
T Consensus       261 wd~~~--------g~-----~~~~l~~~~~~~~~~~~~~gH~-~~V~~l~fspd~~~l~S~s~---D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         261 YETEF--------GE-----RIGSLSVPTHSSQASLGEFAHS-SWVMSLSFNDSGETLCSAGW---DGKLRFWDVKTKER  323 (393)
T ss_dssp             EETTT--------CC-----EEEEECBC--------CCBSBS-SCEEEEEECSSSSEEEEEET---TSEEEEEETTTTEE
T ss_pred             ccccc--------ce-----eeeeeccccccccceeeeeccc-CceeeeccCCCCCeeEEECC---CCEEEEEECCCCCE
Confidence            77643        11     22222             2333 56788999999999887763   34899999999987


Q ss_pred             ccceeeCCCCCCcc----cceeEecCCCEEE
Q 039497          473 NGDIRQLTDGPWID----TMPSWSPKGDLIA  499 (642)
Q Consensus       473 ~~~~~~l~~~~~~~----~~~~~spdG~~l~  499 (642)
                         +..+..+...+    ..+.|+|+|..++
T Consensus       324 ---~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         324 ---ITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             ---EEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             ---EEEECCcCCcccCCccEEEECCCCCEEE
Confidence               66776554433    3468999998653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.88  E-value=2e-07  Score=90.34  Aligned_cols=232  Identities=11%  Similarity=0.080  Sum_probs=139.3

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+.|.++|+ |+++..  ....|+.++.++++......  ......+++++||+. +++...    .......++.++. 
T Consensus        44 G~~~D~~G~-Ly~~D~--~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l-~va~~~----~~~~~~~i~~~~~-  114 (319)
T d2dg1a1          44 GLNFDRQGQ-LFLLDV--FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRL-FVCYLG----DFKSTGGIFAATE-  114 (319)
T ss_dssp             EEEECTTSC-EEEEET--TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCE-EEEECT----TSSSCCEEEEECT-
T ss_pred             eCEECCCCC-EEEEEC--CCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCE-EEEecC----CCccceeEEEEcC-
Confidence            579999998 777653  34689999998887555443  455778899999974 444421    1123445666654 


Q ss_pred             cCCCCCCCCCccccceEEccccC--CCCccCcEECCCCCeEEEEeCCC----CceeEEEEECCCCccccceeeCCCCCCc
Q 039497          412 LDPSDDNNREEIPCDVKILTKEE--TGNNAFPSCSPDGKFLVFRSGRS----GHKNLFVLDAVNGEFNGDIRQLTDGPWI  485 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SpDg~~l~~~~~~~----g~~~l~~~d~~~g~~~~~~~~l~~~~~~  485 (642)
                       .     ++     ....+....  ......+++.|||+ |+++....    ....+++++.+++.    ++.+...-..
T Consensus       115 -~-----~~-----~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~----~~~~~~~~~~  178 (319)
T d2dg1a1         115 -N-----GD-----NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT----VTPIIQNISV  178 (319)
T ss_dssp             -T-----SC-----SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC----EEEEEEEESS
T ss_pred             -C-----Cc-----eeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce----eEEEeeccce
Confidence             2     22     222222211  12345678999997 55554321    23479999987555    3555443334


Q ss_pred             ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC--ceEEeee---cCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497          486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS--GLRRIHV---AGPEGSGDVDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~---~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      ...++|+|||+.||+.....+       .|++++++..  .......   .....     ...+..+++.++|+ |+++.
T Consensus       179 pnGia~s~dg~~lyvad~~~~-------~I~~~d~~~~g~~~~~~~~~~~~~~~~-----~~~PdGl~vD~~G~-l~Va~  245 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTAN-------RLHRIALEDDGVTIQPFGATIPYYFTG-----HEGPDSCCIDSDDN-LYVAM  245 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGT-------EEEEEEECTTSSSEEEEEEEEEEECCS-----SSEEEEEEEBTTCC-EEEEE
T ss_pred             eeeeeeccccceEEEecccCC-------ceEEEEEcCCCceeccccceeeeccCC-----ccceeeeeEcCCCC-EEEEE
Confidence            467899999999998876543       4899987643  2111110   00110     00245688999997 55554


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCC------CCCCCCcEEecCC-ceEEeecC
Q 039497          561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWN------GYENGTPAWHPGN-QLDLGKLR  619 (642)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~------~~~~~~~~~s~dg-~~~~~~~~  619 (642)
                      ..++                .|++++.+|..+.++.-.      ......++|.+++ +++++...
T Consensus       246 ~~~g----------------~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         246 YGQG----------------RVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             ETTT----------------EEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             cCCC----------------EEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence            4332                899999887766655422      1234678898877 44455443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.4e-06  Score=78.34  Aligned_cols=218  Identities=13%  Similarity=0.120  Sum_probs=130.8

Q ss_pred             EEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497          336 SFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS  415 (642)
Q Consensus       336 ~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  415 (642)
                      .++++++.|+..+.   ...|.++++..+...............+.+....++....       .....+|++..  .  
T Consensus        60 ~v~~~~~~l~s~s~---D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--~--  125 (293)
T d1p22a2          60 CLQYDERVIITGSS---DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK-------DRSIAVWDMAS--P--  125 (293)
T ss_dssp             EEECCSSEEEEEET---TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET-------TSCEEEEECSS--S--
T ss_pred             eeecccceeecccc---cccccccccccccccccccccccccccccccccceeeccc-------ccceeEeeccc--c--
Confidence            45667887776553   3568888888877655554444444556666666766653       56778887754  1  


Q ss_pred             CCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCC
Q 039497          416 DDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKG  495 (642)
Q Consensus       416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG  495 (642)
                          ...  .....+..+. ..+....+  ....++..+   ++..|.+|++.+++.   +..+......+.  .+++++
T Consensus       126 ----~~~--~~~~~~~~~~-~~v~~~~~--~~~~~~~~s---~d~~i~~~d~~~~~~---~~~~~~~~~~v~--~~~~~~  188 (293)
T d1p22a2         126 ----TDI--TLRRVLVGHR-AAVNVVDF--DDKYIVSAS---GDRTIKVWNTSTCEF---VRTLNGHKRGIA--CLQYRD  188 (293)
T ss_dssp             ----SCC--EEEEEECCCS-SCEEEEEE--ETTEEEEEE---TTSEEEEEETTTCCE---EEEEECCSSCEE--EEEEET
T ss_pred             ----ccc--cccccccccc-ccccccee--ccccccccc---CCCceeeecCCCCcE---EEEEcccccccc--cccCCC
Confidence                100  0112222222 23333333  444555555   334799999998875   555554444433  345557


Q ss_pred             CEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCC
Q 039497          496 DLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQ  575 (642)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~  575 (642)
                      ..|+....++.        |.+||+.+........ ....         ....+++++..|+..+.++            
T Consensus       189 ~~l~~~~~dg~--------i~i~d~~~~~~~~~~~-~~~~---------~v~~~~~~~~~l~sg~~dg------------  238 (293)
T d1p22a2         189 RLVVSGSSDNT--------IRLWDIECGACLRVLE-GHEE---------LVRCIRFDNKRIVSGAYDG------------  238 (293)
T ss_dssp             TEEEEEETTSC--------EEEEETTTCCEEEEEC-CCSS---------CEEEEECCSSEEEEEETTS------------
T ss_pred             CeEEEecCCCE--------EEEEecccceeeeeec-ccce---------eeeeccccceEEEEEcCCC------------
Confidence            78888777664        8999998876655443 2222         2346788999888777654            


Q ss_pred             CCCCCcEEEEEcCCC----------ceeeccCCCCCCCCcEEecCCceEEeecCCC
Q 039497          576 FQPYGDLYVVKLDGS----------GLRRLTWNGYENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       576 ~~~~~~l~~~~~~~~----------~~~~lt~~~~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                           .|.+|++...          .+..+..+...+.+++|  |+++|++....+
T Consensus       239 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg  287 (293)
T d1p22a2         239 -----KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD  287 (293)
T ss_dssp             -----CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred             -----EEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCC
Confidence                 6777775321          24556666667777777  566787765443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.83  E-value=4.2e-06  Score=84.39  Aligned_cols=258  Identities=11%  Similarity=0.050  Sum_probs=153.2

Q ss_pred             cceeecCCcEEEEEEeccCCceeeEEEEEeecCCC-------CcccCCeecCCCCEEEEEEeecCCC--------CCCcc
Q 039497          247 TPAAFHDGKRLAVATRRKNRNFRHIEIYDLTLNPN-------FHHYNPFVSANSEFIGYHRFRGEST--------EGQST  311 (642)
Q Consensus       247 ~~~~SpdG~~l~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~spDg~~l~~~~~~~~~~--------~~~~~  311 (642)
                      ...+||||++++|.....|.....++++|+.++..       .....+.|++|++.++|.+.+....        .+...
T Consensus       129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~  208 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             ceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcc
Confidence            35679999999999999999999999999944321       1224678999999999987653211        12223


Q ss_pred             cceEeeccCCCceeE-EeeeCC-C----ccEEcCCCCEEEEEecC--CCceeEEEEECCCCCe--------eEEeecCCc
Q 039497          312 IPHLEPVASPVKELR-MLRLNG-S----FPSFSPDGGLIVFNHDF--ELNAGIKIAKSDGSKR--------WTLIKDRTA  375 (642)
Q Consensus       312 ~~~~~~~~~~~~~~~-~~~~~~-~----~~~~spdg~~l~~~~~~--~~~~~l~~~d~~~~~~--------~~l~~~~~~  375 (642)
                      .++...+......-. +..... .    ....++||+++++....  .....+|..++.....        ..+......
T Consensus       209 ~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  288 (430)
T d1qfma1         209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG  288 (430)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS
T ss_pred             eEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccccc
Confidence            455666655433221 222211 1    23468999988775432  3345788888754321        222221111


Q ss_pred             eeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeC
Q 039497          376 FYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSG  455 (642)
Q Consensus       376 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~  455 (642)
                      ..-....+|..+++.++.     +..+.+|+.++.  +     ...  ....+.+..+.......-.++..+.+|++...
T Consensus       289 ~~~~~~~~~~~~~~~Tn~-----~a~~~~L~~~~~--~-----~~~--~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~  354 (430)
T d1qfma1         289 EYDYVTNEGTVFTFKTNR-----HSPNYRLINIDF--T-----DPE--ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (430)
T ss_dssp             CEEEEEEETTEEEEEECT-----TCTTCEEEEEET--T-----BCC--GGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             ceEEEecCCceeecccCc-----ccccceeEEecC--C-----CCc--cccceEEecccCcceeeeEEEEECCEEEEEEE
Confidence            111233456667776652     344567777766  2     110  00334444332122332344445668887777


Q ss_pred             CCCceeEEEEECCCCccccceeeCC-CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497          456 RSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       456 ~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                      .++..+|.+++..+++.    ..+. ...+.+.....+++...+.|....-.    .+..+|.+|+++++.+
T Consensus       355 ~~~~~~l~v~~~~~~~~----~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~----tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         355 HDVKNTLQLHDLATGAL----LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFL----SPGIIYHCDLTKEELE  418 (430)
T ss_dssp             ETTEEEEEEEETTTCCE----EEEECCCSSEEEEEECCTTCSEEEEEEECSS----CCCEEEEEETTSSSCC
T ss_pred             cCCEeEEEEEECCCCcE----EEecCCCCceEeeccCCCCCCEEEEEEcCCC----CCCeEEEEECCCCCcc
Confidence            77889999999998875    4443 33344444455677777777655433    5678999999988653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.81  E-value=5.9e-07  Score=86.61  Aligned_cols=250  Identities=12%  Similarity=0.084  Sum_probs=136.3

Q ss_pred             cceEeeCCeEEEEEecCCC----ceEEEEEecCCCcccccCCccceeeCCCC-----CccccceeecCCcEEEEEEeccC
Q 039497          195 WPTWSGDSTIYFHRQADDG----WWSIFRVSFPENLEFLGFPIAPTRVTPPG-----VHCFTPAAFHDGKRLAVATRRKN  265 (642)
Q Consensus       195 ~~~wspdg~~~~~~~~~~g----~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~SpdG~~l~~~~~~~~  265 (642)
                      -|+|.+||.+|++......    .-+|++++..++        ....+..+.     .....+++++||..|+++.... 
T Consensus        22 Gpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~--------~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~-   92 (314)
T d1pjxa_          22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG--------KKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-   92 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTC--------CEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-
T ss_pred             EeEEeCCCCEEEEECccccccccCCEEEEEECCCC--------cEEEEECCccccCCCcceeEEEeCCCCEEEEEECCC-
Confidence            4799999999988632100    126999999887        333332221     1223467889998777754322 


Q ss_pred             CceeeEEEEEeecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEE
Q 039497          266 RNFRHIEIYDLTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIV  345 (642)
Q Consensus       266 ~~~~~i~~~d~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  345 (642)
                          .+..++               ++|+...+.....               .+  ..+    .......+.++|+ |+
T Consensus        93 ----~i~~~~---------------~~g~~~~~~~~~~---------------~g--~~~----~~pndl~~d~~G~-ly  131 (314)
T d1pjxa_          93 ----GLLVVQ---------------TDGTFEEIAKKDS---------------EG--RRM----QGCNDCAFDYEGN-LW  131 (314)
T ss_dssp             ----EEEEEE---------------TTSCEEECCSBCT---------------TS--CBC----BCCCEEEECTTSC-EE
T ss_pred             ----eEEEEe---------------CCCcEEEEEeccc---------------cc--ccc----CCCcEEEECCCCC-EE
Confidence                343333               3333211110000               00  000    0112346777876 44


Q ss_pred             EEec-------------CCCceeEEEEECCCCCeeEEeecCCceeeeeecCCC----EEEEEEcCCCcccCCCeEEEEEE
Q 039497          346 FNHD-------------FELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEK----HVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       346 ~~~~-------------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~----~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      +...             ......||.++.++........-.....+.|+|+++    .|+++..      ....+..+++
T Consensus       132 vtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~------~~~~i~~~d~  205 (314)
T d1pjxa_         132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAET------PTKKLWSYDI  205 (314)
T ss_dssp             EEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEET------TTTEEEEEEE
T ss_pred             EecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEee------cccceEEeec
Confidence            4321             122457888887765433332233456788999875    5666552      3556666666


Q ss_pred             EeecCCCCCCCCCccccceEEc---cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCc
Q 039497          409 SFQLDPSDDNNREEIPCDVKIL---TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWI  485 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~  485 (642)
                      +.  +      +. +. ..+.+   ..........+++..+|+ |+++..  +...|++++.++|+.   ...+......
T Consensus       206 ~~--~------g~-~~-~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~--~~g~I~~~dp~~g~~---~~~i~~p~~~  269 (314)
T d1pjxa_         206 KG--P------AK-IE-NKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW--GSSHIEVFGPDGGQP---KMRIRCPFEK  269 (314)
T ss_dssp             EE--T------TE-EE-EEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE--TTTEEEEECTTCBSC---SEEEECSSSC
T ss_pred             cC--c------cc-cc-eeeEEEEccccccccceeeEEecCCc-EEEEEc--CCCEEEEEeCCCCEE---EEEEECCCCC
Confidence            54  2      21 00 11111   111112234578888997 444443  334899999987774   3444433334


Q ss_pred             ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC
Q 039497          486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS  523 (642)
Q Consensus       486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~  523 (642)
                      ..+++|.||++.|+++....+       +|+++++...
T Consensus       270 ~t~~afg~d~~~lyVt~~~~g-------~i~~~~~~~~  300 (314)
T d1pjxa_         270 PSNLHFKPQTKTIFVTEHENN-------AVWKFEWQRN  300 (314)
T ss_dssp             EEEEEECTTSSEEEEEETTTT-------EEEEEECSSC
T ss_pred             EEEEEEeCCCCEEEEEECCCC-------cEEEEECCCC
Confidence            567899999999988876543       4999887543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.77  E-value=4.2e-08  Score=97.66  Aligned_cols=232  Identities=14%  Similarity=0.072  Sum_probs=131.3

Q ss_pred             EcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCc--c-------cCCCeEE
Q 039497          337 FSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIF--Q-------SERATVQ  404 (642)
Q Consensus       337 ~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~--~-------~~~~~~~  404 (642)
                      .+|||++|+...  ....+|.++|+++.+..++..   ....+.+.|+|||+++++......-  .       .......
T Consensus        79 gtpDGr~lfV~d--~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~  156 (441)
T d1qnia2          79 GRYDGKYLFIND--KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYT  156 (441)
T ss_dssp             TEEEEEEEEEEE--TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEE
T ss_pred             ccCCCCEEEEEc--CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccc
Confidence            379999876655  345789999999988777654   4567889999999987765532100  0       0011222


Q ss_pred             -EEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC-------------------------
Q 039497          405 -IARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG-------------------------  458 (642)
Q Consensus       405 -l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g-------------------------  458 (642)
                       +..++.  .      ..+   ...++.-.  .....+.++|||+++++++....                         
T Consensus       157 ~~~~iD~--~------t~~---v~~qI~v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~  223 (441)
T d1qnia2         157 MFTAIDA--E------TMD---VAWQVIVD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIA  223 (441)
T ss_dssp             EEEEEET--T------TCS---EEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHH
T ss_pred             eEEeecC--c------cce---eeEEEecC--CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceE
Confidence             223443  1      111   22333322  35678999999999988764321                         


Q ss_pred             ------------ceeEEEEEC-CCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc-
Q 039497          459 ------------HKNLFVLDA-VNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG-  524 (642)
Q Consensus       459 ------------~~~l~~~d~-~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-  524 (642)
                                  ...+..++. .+.+.   +..|..+ .....+.+||||++++.+....       ..+-++|++.-. 
T Consensus       224 ~~~~dGk~~~v~~~~v~vvd~~~~~~v---~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~-------~tvsv~d~~k~~~  292 (441)
T d1qnia2         224 AAVKAGNFKTIGDSKVPVVDGRGESEF---TRYIPVP-KNPHGLNTSPDGKYFIANGKLS-------PTVSVIAIDKLDD  292 (441)
T ss_dssp             HHHHTTCCBCCTTCCCCEEECSSSCSS---EEEECCB-SSCCCEEECTTSCEEEEECTTS-------SBEEEEEGGGHHH
T ss_pred             EEecCCCEEEeCCCCcEEEEcccCCce---EEEEeCC-CCccCceECCCCCEEEEeCCcC-------CcEEEEEeehhhh
Confidence                        012223332 22222   3344433 3346789999999988886644       348899975311 


Q ss_pred             -----e---EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCC-------
Q 039497          525 -----L---RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDG-------  589 (642)
Q Consensus       525 -----~---~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------  589 (642)
                           .   ..+......+      ..+.+-+|+++|.  +|++.--.               ..|..|+++.       
T Consensus       293 ~~~~~~~~~~~~~~~~~~g------lgplh~~fd~~g~--~yts~~~d---------------s~v~kw~~~~~~~~~~~  349 (441)
T d1qnia2         293 LFEDKIELRDTIVAEPELG------LGPLHTTFDGRGN--AYTTLFID---------------SQVCKWNIADAIKHYNG  349 (441)
T ss_dssp             HTTTSSCGGGGEEECCBCC------SCEEEEEECSSSE--EEEEETTT---------------TEEEEEEHHHHHHHHTT
T ss_pred             HhhccCCcceEEEeecccc------cCcccceecCCce--EEEccccc---------------ceEEEeccchhhhhhcc
Confidence                 0   0011101011      1234558988884  44553322               2788888641       


Q ss_pred             Cc----eeec-----cCCCCCCCCcEEecCCceEEee
Q 039497          590 SG----LRRL-----TWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       590 ~~----~~~l-----t~~~~~~~~~~~s~dg~~~~~~  617 (642)
                      ..    ...+     +.|.....+..++|||+||++.
T Consensus       350 ~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         350 DRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             CCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             CCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            11    1122     2344445788999999999875

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.74  E-value=1e-06  Score=84.80  Aligned_cols=208  Identities=10%  Similarity=0.055  Sum_probs=122.3

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cC----CceeeeeecCCCEEEEEEcCCC-------cccCC
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DR----TAFYNSWSPTEKHVIYTSTGPI-------FQSER  400 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~----~~~~~~~spdg~~l~~~~~~~~-------~~~~~  400 (642)
                      .+.+.+||+.++....   ...|.+++.+++....+..  .+    ....+++.|+|+ |+++.....       .....
T Consensus        75 Gl~~~~dg~~l~vad~---~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          75 GCQCDRDANQLFVADM---RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEECSSSSEEEEEET---TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSS
T ss_pred             eEEEeCCCCEEEEEEC---CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceecc
Confidence            4578999997766543   3568899988776443322  11    245689999996 566542210       01123


Q ss_pred             CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCC----eEEEEeCCCCceeEEEEECCC-Cccccc
Q 039497          401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGK----FLVFRSGRSGHKNLFVLDAVN-GEFNGD  475 (642)
Q Consensus       401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~----~l~~~~~~~g~~~l~~~d~~~-g~~~~~  475 (642)
                      ..-.+|.++.  +      +     +...+...- .....++|+||++    +|+++..  ....|+++++.. |.. ..
T Consensus       151 ~~G~v~~~~~--d------g-----~~~~~~~~~-~~pNGi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~-~~  213 (314)
T d1pjxa_         151 KFGSIYCFTT--D------G-----QMIQVDTAF-QFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKI-EN  213 (314)
T ss_dssp             SCEEEEEECT--T------S-----CEEEEEEEE-SSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEE-EE
T ss_pred             CCceEEEEee--c------C-----ceeEeeCCc-ceeeeeEECCCCCcceeEEEEEee--cccceEEeeccCcccc-ce
Confidence            3456777765  3      3     333333222 3345678999875    5666554  334888888653 331 00


Q ss_pred             ee---eCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcC
Q 039497          476 IR---QLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSA  551 (642)
Q Consensus       476 ~~---~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~  551 (642)
                      .+   .+... ......+++.++|+ |+++....       .+|+++|.++++..........        .+..++|.+
T Consensus       214 ~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~-------g~I~~~dp~~g~~~~~i~~p~~--------~~t~~afg~  277 (314)
T d1pjxa_         214 KKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGS-------SHIEVFGPDGGQPKMRIRCPFE--------KPSNLHFKP  277 (314)
T ss_dssp             EEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETT-------TEEEEECTTCBSCSEEEECSSS--------CEEEEEECT
T ss_pred             eeEEEEccccccccceeeEEecCCc-EEEEEcCC-------CEEEEEeCCCCEEEEEEECCCC--------CEEEEEEeC
Confidence            01   12111 11234568999998 45554322       2499999998775433222111        456799999


Q ss_pred             CCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceee
Q 039497          552 DGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRR  594 (642)
Q Consensus       552 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  594 (642)
                      |++.|+++....+                .||++++....+++
T Consensus       278 d~~~lyVt~~~~g----------------~i~~~~~~~~G~~~  304 (314)
T d1pjxa_         278 QTKTIFVTEHENN----------------AVWKFEWQRNGKKQ  304 (314)
T ss_dssp             TSSEEEEEETTTT----------------EEEEEECSSCBCCC
T ss_pred             CCCEEEEEECCCC----------------cEEEEECCCCChhh
Confidence            9999988876543                89999876544433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.72  E-value=4.5e-06  Score=80.45  Aligned_cols=254  Identities=15%  Similarity=0.077  Sum_probs=138.0

Q ss_pred             ceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCccceeeCCCCCccccceeecCCcEEEEEEeccCCceeeEEEEE
Q 039497          196 PTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRVTPPGVHCFTPAAFHDGKRLAVATRRKNRNFRHIEIYD  275 (642)
Q Consensus       196 ~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~SpdG~~l~~~~~~~~~~~~~i~~~d  275 (642)
                      ++|.++|.+|++. ...+  .|++++++++.       ....+.........+++++||+.++. ..........+...+
T Consensus        45 ~~~D~~G~Ly~~D-~~~g--~I~ri~p~g~~-------~~~~~~~~~~~p~gla~~~dG~l~va-~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          45 LNFDRQGQLFLLD-VFEG--NIFKINPETKE-------IKRPFVSHKANPAAIKIHKDGRLFVC-YLGDFKSTGGIFAAT  113 (319)
T ss_dssp             EEECTTSCEEEEE-TTTC--EEEEECTTTCC-------EEEEEECSSSSEEEEEECTTSCEEEE-ECTTSSSCCEEEEEC
T ss_pred             CEECCCCCEEEEE-CCCC--EEEEEECCCCe-------EEEEEeCCCCCeeEEEECCCCCEEEE-ecCCCccceeEEEEc
Confidence            7999999988875 3445  89999988862       22333333334556788999974443 211100111121111


Q ss_pred             eecCCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEeeeCCCccEEcCCCCEEEEEecC----C
Q 039497          276 LTLNPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRMLRLNGSFPSFSPDGGLIVFNHDF----E  351 (642)
Q Consensus       276 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~  351 (642)
                      .               ++..+...               ..... .  .     .......+.++|+ |++....    .
T Consensus       114 ~---------------~~~~~~~~---------------~~~~~-~--~-----~~~nd~~~d~~G~-l~vtd~~~~~~~  154 (319)
T d2dg1a1         114 E---------------NGDNLQDI---------------IEDLS-T--A-----YCIDDMVFDSKGG-FYFTDFRGYSTN  154 (319)
T ss_dssp             T---------------TSCSCEEE---------------ECSSS-S--C-----CCEEEEEECTTSC-EEEEECCCBTTB
T ss_pred             C---------------CCceeeee---------------ccCCC-c--c-----cCCcceeEEeccc-eeeccccccccc
Confidence            1               11100000               00000 0  0     0001347899997 5554321    2


Q ss_pred             CceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEc
Q 039497          352 LNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKIL  430 (642)
Q Consensus       352 ~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  430 (642)
                      ....++.++.+++....+.. -.....++|+||++.|+++..      ....+..++++.  +      +.........+
T Consensus       155 ~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~------~~~~I~~~d~~~--~------g~~~~~~~~~~  220 (319)
T d2dg1a1         155 PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET------TANRLHRIALED--D------GVTIQPFGATI  220 (319)
T ss_dssp             CCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG------GGTEEEEEEECT--T------SSSEEEEEEEE
T ss_pred             CcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecc------cCCceEEEEEcC--C------Cceecccccee
Confidence            34679999988887666554 345667899999999998874      245565555544  2      21100001111


Q ss_pred             --cccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC------CCcccceeEecCCCEEEEEe
Q 039497          431 --TKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG------PWIDTMPSWSPKGDLIAFSS  502 (642)
Q Consensus       431 --~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~------~~~~~~~~~spdG~~l~~~~  502 (642)
                        ..........+++.++|+ |+++..  +...|.+++.+ |+.   +..+.-.      .....+++|.|++..++...
T Consensus       221 ~~~~~~~~~PdGl~vD~~G~-l~Va~~--~~g~V~~~~p~-G~~---l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         221 PYYFTGHEGPDSCCIDSDDN-LYVAMY--GQGRVLVFNKR-GYP---IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEECCSSSEEEEEEEBTTCC-EEEEEE--TTTEEEEECTT-SCE---EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             eeccCCccceeeeeEcCCCC-EEEEEc--CCCEEEEECCC-CcE---EEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence              111102234578889997 444443  33489999976 665   4444211      12345778999988887776


Q ss_pred             cCCCCCCCCceeEEEEeCCC
Q 039497          503 NRHNPDNVEAFSLYVIKPDG  522 (642)
Q Consensus       503 ~~~~~~~~~~~~l~~~d~~~  522 (642)
                      .+..  ......||.++...
T Consensus       294 ~~~~--~~~~g~l~~~~~~~  311 (319)
T d2dg1a1         294 NDIE--MGGGSMLYTVNGFA  311 (319)
T ss_dssp             ECGG--GTCCEEEEEEECSS
T ss_pred             CCCC--cCCceeEEEEeCCC
Confidence            5432  22455688887643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.68  E-value=1.5e-06  Score=83.23  Aligned_cols=221  Identities=12%  Similarity=0.071  Sum_probs=129.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      .++++|||+ |++..  ....+|+.++.++..............++|+|||+ |+++..      ....+..+....  .
T Consensus        32 ~iAv~pdG~-l~vt~--~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~-l~v~~~------~~~~~~~~~~~~--~   99 (302)
T d2p4oa1          32 NLASAPDGT-IFVTN--HEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGW------NADSIPVVSLVK--S   99 (302)
T ss_dssp             EEEECTTSC-EEEEE--TTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEE------CTTSCEEEEEEC--T
T ss_pred             CEEECCCCC-EEEEe--CCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCC-eEEEec------CCceEEEEEecc--c
Confidence            468999998 54544  33568999998776433333367788899999998 444442      244555555543  1


Q ss_pred             CCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--------CCC
Q 039497          414 PSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--------GPW  484 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--------~~~  484 (642)
                           .+     ....+.... ......+++.+||+.+ +...  ....+|.++..++..   ...+..        ...
T Consensus       100 -----~~-----~~~~~~~~~~~~~~n~i~~~~~g~~~-v~~~--~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~  163 (302)
T d2p4oa1         100 -----DG-----TVETLLTLPDAIFLNGITPLSDTQYL-TADS--YRGAIWLIDVVQPSG---SIWLEHPMLARSNSESV  163 (302)
T ss_dssp             -----TS-----CEEEEEECTTCSCEEEEEESSSSEEE-EEET--TTTEEEEEETTTTEE---EEEEECGGGSCSSTTCC
T ss_pred             -----cc-----ceeeccccCCccccceeEEccCCCEE-eecc--ccccceeeeccCCcc---eeEecCCccceeeccCc
Confidence                 12     333333221 1345567899999654 3433  345899999887653   111111        011


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE----EeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR----RIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      .......+.+++.+++......       .|++++++.....    .....   .       ....++|++||+ |+++.
T Consensus       164 ~~~~ngi~~~~~~l~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~---~-------~pdgia~d~dG~-l~va~  225 (302)
T d2p4oa1         164 FPAANGLKRFGNFLYVSNTEKM-------LLLRIPVDSTDKPGEPEIFVEQ---T-------NIDDFAFDVEGN-LYGAT  225 (302)
T ss_dssp             SCSEEEEEEETTEEEEEETTTT-------EEEEEEBCTTSCBCCCEEEEES---C-------CCSSEEEBTTCC-EEEEC
T ss_pred             ccccccccccCCceeeecCCCC-------eEEeccccccccccccccccCC---C-------CCcceEECCCCC-EEEEE
Confidence            1111134556788888877543       5999988764321    11111   1       345799999997 66555


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccC--CCCCCCCcEE---ecCCce-EEe
Q 039497          561 NLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTW--NGYENGTPAW---HPGNQL-DLG  616 (642)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~--~~~~~~~~~~---s~dg~~-~~~  616 (642)
                      ...+                .|++++.+++.....+.  .......++|   ++|++. |++
T Consensus       226 ~~~~----------------~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         226 HIYN----------------SVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             BTTC----------------CEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             cCCC----------------cEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence            4432                79999888765443332  2233467889   667754 444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=1.6e-05  Score=73.86  Aligned_cols=203  Identities=12%  Similarity=0.087  Sum_probs=133.8

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .+++.+..++|++..  .....|+.++++++..+.+..  ......+++..-++.|+++..      ....+.++.  . 
T Consensus        40 ~ld~D~~~~~iywsd--~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~------~~~~I~~~~--~-  108 (263)
T d1npea_          40 GLAFDCVDKVVYWTD--ISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS------QLDRIEVAK--M-  108 (263)
T ss_dssp             EEEEETTTTEEEEEE--TTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET------TTTEEEEEE--T-
T ss_pred             EEEEEeCCCEEEEEE--CCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEecc------CCCEEEEEe--c-
Confidence            346777788887765  335689999999888776654  245667788777889998873      244554444  4 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPS  490 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~  490 (642)
                       +     +.     ..+.+..........+++.|...+|+++....+...|++.++++...    +.+.. .-.....++
T Consensus       109 -d-----g~-----~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~----~~i~~~~~~~P~gla  173 (263)
T d1npea_         109 -D-----GT-----QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----RILAQDNLGLPNGLT  173 (263)
T ss_dssp             -T-----SC-----SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----EEEECTTCSCEEEEE
T ss_pred             -C-----Cc-----eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc----eeeeeecccccceEE
Confidence             3     12     22333322214566788999888998887544455799999985543    44432 223345678


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      +++.+++||+.....       ..|..+++++...+.+.. +..        .+..+  +.++.+||++.....      
T Consensus       174 iD~~~~~lYw~d~~~-------~~I~~~~~~g~~~~~v~~-~~~--------~P~~l--av~~~~lYwtd~~~~------  229 (263)
T d1npea_         174 FDAFSSQLCWVDAGT-------HRAECLNPAQPGRRKVLE-GLQ--------YPFAV--TSYGKNLYYTDWKTN------  229 (263)
T ss_dssp             EETTTTEEEEEETTT-------TEEEEEETTEEEEEEEEE-CCC--------SEEEE--EEETTEEEEEETTTT------
T ss_pred             EeecCcEEEEEeCCC-------CEEEEEECCCCCeEEEEC-CCC--------CcEEE--EEECCEEEEEECCCC------
Confidence            999999999987543       349999999877766654 222        22334  446788988875432      


Q ss_pred             CCCCCCCCCCcEEEEEcCCCceeecc
Q 039497          571 SWPNQFQPYGDLYVVKLDGSGLRRLT  596 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~~~~~~~~~lt  596 (642)
                                .|++++..+++..++.
T Consensus       230 ----------~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         230 ----------SVIAMDLAISKEMDTF  245 (263)
T ss_dssp             ----------EEEEEETTTTEEEEEE
T ss_pred             ----------EEEEEECCCCccceEE
Confidence                      8999999877654433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.64  E-value=2.5e-06  Score=81.22  Aligned_cols=227  Identities=16%  Similarity=0.180  Sum_probs=141.5

Q ss_pred             CccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeec
Q 039497          333 SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQL  412 (642)
Q Consensus       333 ~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~  412 (642)
                      ..|.|.+....|+|+..  ....|+.++.++++.........+..+.+.+||+.++ +.        ...  ++.++.  
T Consensus        21 Egp~wd~~~~~l~wvDi--~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~v-a~--------~~g--l~~~d~--   85 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNI--LERELHELHLASGRKTVHALPFMGSALAKISDSKQLI-AS--------DDG--LFLRDT--   85 (295)
T ss_dssp             EEEEEETTTTEEEEEEG--GGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEE-EE--------TTE--EEEEET--
T ss_pred             eCCeEECCCCEEEEEEC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEE-EE--------eCc--cEEeec--
Confidence            36789998888988763  3568999999998866555566777888888886554 44        223  444544  


Q ss_pred             CCCCCCCCCccccceEEccccC----CCCccCcEECCCCCeEEEEeCC---CCceeEEEEECCCCccccceeeCCCCCCc
Q 039497          413 DPSDDNNREEIPCDVKILTKEE----TGNNAFPSCSPDGKFLVFRSGR---SGHKNLFVLDAVNGEFNGDIRQLTDGPWI  485 (642)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~SpDg~~l~~~~~~---~g~~~l~~~d~~~g~~~~~~~~l~~~~~~  485 (642)
                      +     ++     +.+.+....    ........+.|+|+..+.....   .+...+|.++  .|+.    +.+......
T Consensus        86 ~-----tg-----~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~~----~~~~~~~~~  149 (295)
T d2ghsa1          86 A-----TG-----VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV----TKLFADISI  149 (295)
T ss_dssp             T-----TC-----CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE----EEEEEEESS
T ss_pred             c-----cc-----eeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec--CCcE----EEEeeccCC
Confidence            2     23     444443322    1134567899999754333221   2234566554  4663    554443344


Q ss_pred             ccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCC------ceEEeee-cCCCCCCCcccccccceEEcCCCCEEEE
Q 039497          486 DTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGS------GLRRIHV-AGPEGSGDVDRERINHVCFSADGEWLLF  558 (642)
Q Consensus       486 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~------~~~~l~~-~~~~~~~~~~~~~~~~~~~S~Dg~~l~~  558 (642)
                      ...+.|++|++.+++......       .||+++++..      +...... .+..+       .+..+++..+|. |++
T Consensus       150 ~Ng~~~s~d~~~l~~~dt~~~-------~I~~~~~d~~~~~~~~~~~~~~~~~~~~g-------~pdG~~vD~~Gn-lWv  214 (295)
T d2ghsa1         150 PNSICFSPDGTTGYFVDTKVN-------RLMRVPLDARTGLPTGKAEVFIDSTGIKG-------GMDGSVCDAEGH-IWN  214 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTC-------EEEEEEBCTTTCCBSSCCEEEEECTTSSS-------EEEEEEECTTSC-EEE
T ss_pred             cceeeecCCCceEEEeecccc-------eeeEeeecccccccccceEEEeccCcccc-------cccceEEcCCCC-EEe
Confidence            567899999999999887553       4888887532      1222221 12222       456778899997 444


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEe-cCC-ceEEeecCCC
Q 039497          559 TANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWH-PGN-QLDLGKLRLE  621 (642)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s-~dg-~~~~~~~~~~  621 (642)
                      +.-.++                .|++++.+|..+..+.-......+++|- +|. .+|+++.+.+
T Consensus       215 a~~~~g----------------~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~  263 (295)
T d2ghsa1         215 ARWGEG----------------AVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH  263 (295)
T ss_dssp             EEETTT----------------EEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             eeeCCC----------------ceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCcC
Confidence            433322                7999999887777766544456788896 665 5667766554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.3e-05  Score=74.64  Aligned_cols=200  Identities=8%  Similarity=0.032  Sum_probs=130.1

Q ss_pred             EEEEEecCCCceeEEEEECCCCCeeEEee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCC
Q 039497          343 LIVFNHDFELNAGIKIAKSDGSKRWTLIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNRE  421 (642)
Q Consensus       343 ~l~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  421 (642)
                      +|+|..    ...|..+++++.+...+.. ...+..+.|.+..++|+++...      ..  .|+....  ++.   .. 
T Consensus         3 fLl~s~----~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~------~~--~I~~~~l--~~~---~~-   64 (266)
T d1ijqa1           3 YLFFTN----RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS------QR--MICSTQL--DRA---HG-   64 (266)
T ss_dssp             EEEEEC----BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT------TT--EEEEEEC-----------
T ss_pred             EEEEEC----CCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECC------CC--EEEEEEe--cCC---CC-
Confidence            456644    3579999999988777755 4456678899999999988732      33  3444444  211   00 


Q ss_pred             ccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEE
Q 039497          422 EIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFS  501 (642)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~  501 (642)
                        ....+.+..........+++-+-++.|+++...  ...|.+.++++...   ...+.........++..|...+|++.
T Consensus        65 --~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~--~~~I~v~~~~g~~~---~~~~~~~~~~P~~l~vd~~~g~ly~~  137 (266)
T d1ijqa1          65 --VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFMYWT  137 (266)
T ss_dssp             -----CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSSE---EEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             --CcceEEEEeCCCCCcceEEEeeccceEEEEecC--CCEEEeEecCCceE---EEEEcCCCCCcceEEEEcccCeEEEe
Confidence              002222222221345567887788899988753  34799999885543   22233333345667889988888888


Q ss_pred             ecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCc
Q 039497          502 SNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGD  581 (642)
Q Consensus       502 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  581 (642)
                      ....      ...|++.++++...+.+...+..        .+..+++.+.+++||++....                ..
T Consensus       138 ~~~~------~~~I~r~~~dGs~~~~l~~~~~~--------~p~gl~iD~~~~~lYw~d~~~----------------~~  187 (266)
T d1ijqa1         138 DWGT------PAKIKKGGLNGVDIYSLVTENIQ--------WPNGITLDLLSGRLYWVDSKL----------------HS  187 (266)
T ss_dssp             ECSS------SCEEEEEETTSCCEEEEECSSCS--------CEEEEEEETTTTEEEEEETTT----------------TE
T ss_pred             ccCC------CcceeEeccCCCceecccccccc--------eeeEEEeeccccEEEEecCCc----------------CE
Confidence            6432      34699999999888877654332        356789999999999986543                28


Q ss_pred             EEEEEcCCCceeeccC
Q 039497          582 LYVVKLDGSGLRRLTW  597 (642)
Q Consensus       582 l~~~~~~~~~~~~lt~  597 (642)
                      |+.++++|...+.+..
T Consensus       188 I~~~~~dG~~~~~~~~  203 (266)
T d1ijqa1         188 ISSIDVNGGNRKTILE  203 (266)
T ss_dssp             EEEEETTSCSCEEEEE
T ss_pred             EEEEECCCCCEEEEEe
Confidence            9999999987655543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.60  E-value=6e-06  Score=78.92  Aligned_cols=188  Identities=14%  Similarity=0.055  Sum_probs=100.1

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECC--CCCeeEEee---cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSD--GSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARV  408 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~--~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~  408 (642)
                      .+++++||+.++.... .  ..++.++..  .+....+..   ......+.+.++|+ +++...        ....+|.+
T Consensus        72 gla~~~dG~l~v~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~--------~~~~i~~~  139 (302)
T d2p4oa1          72 GLAFTSNGDLVATGWN-A--DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADS--------YRGAIWLI  139 (302)
T ss_dssp             EEEECTTSCEEEEEEC-T--TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEET--------TTTEEEEE
T ss_pred             eEEEcCCCCeEEEecC-C--ceEEEEEecccccceeeccccCCccccceeEEccCCC-EEeecc--------ccccceee
Confidence            4588999984444322 2  334444433  333344433   34466788899985 444442        23345555


Q ss_pred             EeecCCCCCCCCCccccceEEcccc--------CCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC
Q 039497          409 SFQLDPSDDNNREEIPCDVKILTKE--------ETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT  480 (642)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~  480 (642)
                      +.  +     ++     ........        .........++.|+.++++....  ...|++++..............
T Consensus       140 ~~--~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~~  205 (302)
T d2p4oa1         140 DV--V-----QP-----SGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE--KMLLLRIPVDSTDKPGEPEIFV  205 (302)
T ss_dssp             ET--T-----TT-----EEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT--TTEEEEEEBCTTSCBCCCEEEE
T ss_pred             ec--c-----CC-----cceeEecCCccceeeccCcccccccccccCCceeeecCC--CCeEEecccccccccccccccc
Confidence            44  2     11     11111000        00111112345567788887764  3489999987543201111111


Q ss_pred             CCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEE---cCCCCEEE
Q 039497          481 DGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCF---SADGEWLL  557 (642)
Q Consensus       481 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---S~Dg~~l~  557 (642)
                      . ......+++++||+ |+++....+       .|++++.+++............       .+..++|   ++|++.||
T Consensus       206 ~-~~~pdgia~d~dG~-l~va~~~~~-------~V~~i~p~G~~~~~~~~~~~~~-------~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         206 E-QTNIDDFAFDVEGN-LYGATHIYN-------SVVRIAPDRSTTIIAQAEQGVI-------GSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             E-SCCCSSEEEBTTCC-EEEECBTTC-------CEEEECTTCCEEEEECGGGTCT-------TEEEEEECCSTTTTTEEE
T ss_pred             C-CCCCcceEECCCCC-EEEEEcCCC-------cEEEECCCCCEEEEEecCCCCC-------CceEEEEcCCCCCCCEEE
Confidence            1 22345689999998 566554332       3999998765444333221111       3567899   78999999


Q ss_pred             EEEecC
Q 039497          558 FTANLG  563 (642)
Q Consensus       558 ~~~~~~  563 (642)
                      +++..+
T Consensus       270 vtt~~g  275 (302)
T d2p4oa1         270 VVTNGG  275 (302)
T ss_dssp             EEECTT
T ss_pred             EECCCC
Confidence            887654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.55  E-value=1.1e-05  Score=76.48  Aligned_cols=188  Identities=16%  Similarity=0.110  Sum_probs=115.8

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee------cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .+.+.++|+.+ +...    ..|+++|.++++.+.+..      .....+..+.|+|+ |++.....  ........+|.
T Consensus        63 ~i~~~~dg~l~-va~~----~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~--~~~~~~g~l~~  134 (295)
T d2ghsa1          63 ALAKISDSKQL-IASD----DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGR--KAETGAGSIYH  134 (295)
T ss_dssp             EEEEEETTEEE-EEET----TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEET--TCCTTCEEEEE
T ss_pred             EEEEecCCCEE-EEEe----CccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccc--cccccceeEee
Confidence            45667788644 4332    479999999998777754      12356778999998 44444211  11234556777


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC--Ccccccee---eCCCC
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN--GEFNGDIR---QLTDG  482 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~--g~~~~~~~---~l~~~  482 (642)
                      +..         +     ....+...- .....+.|++|++.++++....  ..||.++++.  +.......   .+...
T Consensus       135 ~~~---------g-----~~~~~~~~~-~~~Ng~~~s~d~~~l~~~dt~~--~~I~~~~~d~~~~~~~~~~~~~~~~~~~  197 (295)
T d2ghsa1         135 VAK---------G-----KVTKLFADI-SIPNSICFSPDGTTGYFVDTKV--NRLMRVPLDARTGLPTGKAEVFIDSTGI  197 (295)
T ss_dssp             EET---------T-----EEEEEEEEE-SSEEEEEECTTSCEEEEEETTT--CEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred             ecC---------C-----cEEEEeecc-CCcceeeecCCCceEEEeeccc--ceeeEeeecccccccccceEEEeccCcc
Confidence            754         2     444444333 3456789999999999887643  4788887652  11100011   12223


Q ss_pred             CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEc-CCCCEEEEEEe
Q 039497          483 PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFS-ADGEWLLFTAN  561 (642)
Q Consensus       483 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S-~Dg~~l~~~~~  561 (642)
                      .+.....+..++|+ |+++.-...       .|+++|.++.....+....  .       .++.++|- +|.+.||+++.
T Consensus       198 ~g~pdG~~vD~~Gn-lWva~~~~g-------~V~~~dp~G~~~~~i~lP~--~-------~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         198 KGGMDGSVCDAEGH-IWNARWGEG-------AVDRYDTDGNHIARYEVPG--K-------QTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             SSEEEEEEECTTSC-EEEEEETTT-------EEEEECTTCCEEEEEECSC--S-------BEEEEEEESTTSCEEEEEEB
T ss_pred             cccccceEEcCCCC-EEeeeeCCC-------ceEEecCCCcEeeEecCCC--C-------ceEEEEEeCCCCCEEEEEEC
Confidence            33345568899997 555443322       3999999877666665422  1       46788895 89999999875


Q ss_pred             cC
Q 039497          562 LG  563 (642)
Q Consensus       562 ~~  563 (642)
                      ..
T Consensus       261 ~~  262 (295)
T d2ghsa1         261 RE  262 (295)
T ss_dssp             CT
T ss_pred             Cc
Confidence            53

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=1.7e-05  Score=73.66  Aligned_cols=217  Identities=13%  Similarity=0.081  Sum_probs=138.5

Q ss_pred             CCEEEEEecCCCceeEEEEECCCCCeeE------Eee-cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecC
Q 039497          341 GGLIVFNHDFELNAGIKIAKSDGSKRWT------LIK-DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLD  413 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~------l~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  413 (642)
                      |.+|+|..    ...|..+++++.....      +.. ...+..+.|.+..++|+++...      ..  .|+.+..  +
T Consensus         1 ~~fLl~s~----~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~------~~--~I~~~~l--~   66 (263)
T d1npea_           1 GTHLLFAQ----TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------EP--SIGRASL--H   66 (263)
T ss_dssp             CEEEEEEE----EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------TT--EEEEEES--S
T ss_pred             CCEEEEeC----CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECC------CC--eEEEEEc--c
Confidence            45778855    3688888888765321      211 2335567888889999887632      33  4666655  3


Q ss_pred             CCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcccceeEe
Q 039497          414 PSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWIDTMPSWS  492 (642)
Q Consensus       414 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~~~~~~s  492 (642)
                           ++     ..+.+..........+++..-++.|+++...  ...|.+.++++...    +.|.. .......++..
T Consensus        67 -----g~-----~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~--~~~I~~~~~dg~~~----~~l~~~~l~~p~~l~vd  130 (263)
T d1npea_          67 -----GG-----EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDGTQR----RVLFDTGLVNPRGIVTD  130 (263)
T ss_dssp             -----SC-----CCEEEECTTCCCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSC----EEEECSSCSSEEEEEEE
T ss_pred             -----cC-----CcEEEEEeccccccEEEEeccCCeEEEeccC--CCEEEEEecCCceE----EEEecccccCCcEEEEe
Confidence                 22     3333332221345567787668889888753  34899999885543    44433 22445677899


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCC
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSW  572 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~  572 (642)
                      |...+|++.....     ....|++.++++...+.+...+..        .+..+++.+.+++||++....         
T Consensus       131 p~~g~ly~t~~~~-----~~~~I~r~~~dG~~~~~i~~~~~~--------~P~glaiD~~~~~lYw~d~~~---------  188 (263)
T d1npea_         131 PVRGNLYWTDWNR-----DNPKIETSHMDGTNRRILAQDNLG--------LPNGLTFDAFSSQLCWVDAGT---------  188 (263)
T ss_dssp             TTTTEEEEEECCS-----SSCEEEEEETTSCCCEEEECTTCS--------CEEEEEEETTTTEEEEEETTT---------
T ss_pred             cccCcEEEeecCC-----CCcEEEEecCCCCCceeeeeeccc--------ccceEEEeecCcEEEEEeCCC---------
Confidence            9988888887543     234699999999887776644322        356788999999999986443         


Q ss_pred             CCCCCCCCcEEEEEcCCCceeeccCCCCCCCCcEEecCCceEEee
Q 039497          573 PNQFQPYGDLYVVKLDGSGLRRLTWNGYENGTPAWHPGNQLDLGK  617 (642)
Q Consensus       573 ~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~s~dg~~~~~~  617 (642)
                             ..|...++++...+.+........++++. ++.+|.+.
T Consensus       189 -------~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd  225 (263)
T d1npea_         189 -------HRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTD  225 (263)
T ss_dssp             -------TEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEE
T ss_pred             -------CEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEE
Confidence                   28999999987766555432223355554 44555554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.49  E-value=1.3e-05  Score=74.49  Aligned_cols=222  Identities=8%  Similarity=0.015  Sum_probs=125.6

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEee
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQ  411 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~  411 (642)
                      .++++++|+ ++++.. .....+..++..+........  ......++++++|+ |+++..        ....+. +.. 
T Consensus        18 ~vavd~dG~-i~v~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~-i~v~d~--------~~~~i~-~~~-   84 (260)
T d1rwia_          18 GVAVDSAGN-VYVTSE-GMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF--------NNRVVT-LAA-   84 (260)
T ss_dssp             EEEECTTCC-EEEEEC-SSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCC-EEEEET--------TTEEEE-ECT-
T ss_pred             EEEEcCCCC-EEEEEc-CCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCC-EEEeee--------eeceee-eee-
Confidence            447899998 333332 334567776665554333332  23456789999987 555542        122222 222 


Q ss_pred             cCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCC-CCCCccccee
Q 039497          412 LDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPS  490 (642)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~  490 (642)
                       +      +.    ....+..........+++.++|+.+ +...  ....+++++..+...    .... ........++
T Consensus        85 -~------~~----~~~~~~~~~~~~p~~iavd~~g~i~-v~d~--~~~~~~~~~~~~~~~----~~~~~~~~~~p~~i~  146 (260)
T d1rwia_          85 -G------SN----NQTVLPFDGLNYPEGLAVDTQGAVY-VADR--GNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVA  146 (260)
T ss_dssp             -T------CS----CCEECCCCSCCSEEEEEECTTCCEE-EEEG--GGTEEEEECTTCSSC----EECCCCSCCSCCEEE
T ss_pred             -e------cc----ceeeeeeeeeeecccccccccceeE-eecc--cccccccccccccee----eeeeecccCCcceee
Confidence             1      11    1222222211345668899999754 4432  333678887765442    3332 2223345678


Q ss_pred             EecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCC
Q 039497          491 WSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPV  570 (642)
Q Consensus       491 ~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~  570 (642)
                      ++|+|+ +++.....       ..|++++.++.....+..... .       .+..++++++|+ |+++....       
T Consensus       147 ~~~~g~-~~v~~~~~-------~~i~~~d~~~~~~~~~~~~~~-~-------~p~gi~~d~~g~-l~vsd~~~-------  202 (260)
T d1rwia_         147 VDNSGN-VYVTDTDN-------NRVVKLEAESNNQVVLPFTDI-T-------APWGIAVDEAGT-VYVTEHNT-------  202 (260)
T ss_dssp             ECTTCC-EEEEEGGG-------TEEEEECTTTCCEEECCCSSC-C-------SEEEEEECTTCC-EEEEETTT-------
T ss_pred             ecCCCC-Eeeecccc-------ccccccccccceeeeeecccc-C-------CCccceeeeeee-eeeeecCC-------
Confidence            899998 45554332       349999998776555433222 2       456789999997 55554332       


Q ss_pred             CCCCCCCCCCcEEEEEcCCCceeeccCCC-CCCCCcEEecCCceEEeecC
Q 039497          571 SWPNQFQPYGDLYVVKLDGSGLRRLTWNG-YENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       571 ~~~~~~~~~~~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~dg~~~~~~~~  619 (642)
                               ..|+.++.++...+.+...+ .....++++++|.++++...
T Consensus       203 ---------~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         203 ---------NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             ---------TEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred             ---------CEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECC
Confidence                     27999988877666555433 23467899999988888544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.42  E-value=0.00039  Score=69.48  Aligned_cols=267  Identities=12%  Similarity=0.028  Sum_probs=149.5

Q ss_pred             CCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCC-ceeEEeeeCCCccEEcCCCCEEEEEecC-------------C
Q 039497          286 NPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV-KELRMLRLNGSFPSFSPDGGLIVFNHDF-------------E  351 (642)
Q Consensus       286 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~-------------~  351 (642)
                      ...+||||++++|....++.   ....+...++.... ....+.......+.|++|++.|+|....             .
T Consensus       129 ~~~~Spd~~~la~s~d~~G~---e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGS---DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTC---SCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ceEecCCCCEEEEEeccccC---chheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            45789999999998766663   22344455554432 1112222333577899999999986531             1


Q ss_pred             CceeEEEEECCCCCee--EEee--cC--CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCcccc
Q 039497          352 LNAGIKIAKSDGSKRW--TLIK--DR--TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPC  425 (642)
Q Consensus       352 ~~~~l~~~d~~~~~~~--~l~~--~~--~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  425 (642)
                      ....+++..+.+....  .+..  ..  ....+..++|++++++....    .......+|.++.....    .......
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~----~~~~~~~~~~~d~~~~~----~~~~~~~  277 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE----GCDPVNRLWYCDLQQES----NGITGIL  277 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC----SSSSCCEEEEEEGGGSS----SSSCSSC
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeec----cCCccEEEEEeeCCCcc----ccccccc
Confidence            1246888887766443  2322  11  23345678999998876542    23445567776651110    0000000


Q ss_pred             ceEEccccCCCCccCcEECCCCCeEEEEeCCCC-ceeEEEEECCCCccccceeeCC-CCCCcccceeEecCCCEEEEEec
Q 039497          426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG-HKNLFVLDAVNGEFNGDIRQLT-DGPWIDTMPSWSPKGDLIAFSSN  503 (642)
Q Consensus       426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g-~~~l~~~d~~~g~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~  503 (642)
                      ....+.... ...... +..+|..+++.+++++ ...|...++..... ...+.+. ........-.++..+++|++...
T Consensus       278 ~~~~~~~~~-~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~-~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~  354 (430)
T d1qfma1         278 KWVKLIDNF-EGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (430)
T ss_dssp             CCEEEECSS-SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCG-GGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             ceeEeeccc-ccceEE-EecCCceeecccCcccccceeEEecCCCCcc-ccceEEecccCcceeeeEEEEECCEEEEEEE
Confidence            122222222 111112 3335666777776654 46899999876542 1113333 33333333345555667777665


Q ss_pred             CCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEE
Q 039497          504 RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLY  583 (642)
Q Consensus       504 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  583 (642)
                      .+     ....|+++++++++...+..... +       .+..+..+++...+.|....-.             ....+|
T Consensus       355 ~~-----~~~~l~v~~~~~~~~~~~~~~~~-~-------sv~~~~~~~~~~~~~~~~ss~~-------------tP~~~y  408 (430)
T d1qfma1         355 HD-----VKNTLQLHDLATGALLKIFPLEV-G-------SVVGYSGQKKDTEIFYQFTSFL-------------SPGIIY  408 (430)
T ss_dssp             ET-----TEEEEEEEETTTCCEEEEECCCS-S-------EEEEEECCTTCSEEEEEEECSS-------------CCCEEE
T ss_pred             cC-----CEeEEEEEECCCCcEEEecCCCC-c-------eEeeccCCCCCCEEEEEEcCCC-------------CCCeEE
Confidence            54     56789999999998877754332 2       2334445667777777654322             234899


Q ss_pred             EEEcCCCce
Q 039497          584 VVKLDGSGL  592 (642)
Q Consensus       584 ~~~~~~~~~  592 (642)
                      .+|+.+++.
T Consensus       409 ~~Dl~t~~~  417 (430)
T d1qfma1         409 HCDLTKEEL  417 (430)
T ss_dssp             EEETTSSSC
T ss_pred             EEECCCCCc
Confidence            999988753

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.39  E-value=3e-05  Score=72.85  Aligned_cols=226  Identities=16%  Similarity=0.118  Sum_probs=128.1

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCeeEEeec----C---CceeeeeecCCCEEEEEEcCCCcccCCCeEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIKD----R---TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIA  406 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~----~---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~  406 (642)
                      .++++++|+ |+++.  .....|.+++.++.-.+.....    .   ....+.+.++....++...       .....+.
T Consensus        27 gvavd~dg~-i~VaD--~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~i~   96 (279)
T d1q7fa_          27 GVAVNAQND-IIVAD--TNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER-------SPTHQIQ   96 (279)
T ss_dssp             EEEECTTCC-EEEEE--GGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-------GGGCEEE
T ss_pred             EEEEcCCCC-EEEEE--CCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceecc-------CCccccc
Confidence            457899998 44433  3457788999887554444221    1   1233455555555555442       2223444


Q ss_pred             EEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC--CCC
Q 039497          407 RVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD--GPW  484 (642)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~--~~~  484 (642)
                      .++.  +      +.    ....+..........+++.++|+.++...   ....+++++.+ |+.   +..+..  ...
T Consensus        97 ~~~~--~------g~----~~~~~~~~~~~~p~~~avd~~G~i~v~~~---~~~~~~~~~~~-g~~---~~~~g~~~~~~  157 (279)
T d1q7fa_          97 IYNQ--Y------GQ----FVRKFGATILQHPRGVTVDNKGRIIVVEC---KVMRVIIFDQN-GNV---LHKFGCSKHLE  157 (279)
T ss_dssp             EECT--T------SC----EEEEECTTTCSCEEEEEECTTSCEEEEET---TTTEEEEECTT-SCE---EEEEECTTTCS
T ss_pred             cccc--c------cc----ceeecCCCcccccceeccccCCcEEEEee---ccceeeEeccC-Cce---eeccccccccc
Confidence            4444  2      21    23333222213345678888987554433   33478888876 543   344322  222


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCC
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGA  564 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~  564 (642)
                      ....+++.++|+ |++.....       ..|++++.++.....+-..+...       .+..+++.++|+ |+++...++
T Consensus       158 ~~~~i~~d~~g~-i~v~d~~~-------~~V~~~d~~G~~~~~~g~~g~~~-------~P~giavD~~G~-i~Vad~~~~  221 (279)
T d1q7fa_         158 FPNGVVVNDKQE-IFISDNRA-------HCVKVFNYEGQYLRQIGGEGITN-------YPIGVGINSNGE-ILIADNHNN  221 (279)
T ss_dssp             SEEEEEECSSSE-EEEEEGGG-------TEEEEEETTCCEEEEESCTTTSC-------SEEEEEECTTCC-EEEEECSSS
T ss_pred             ccceeeecccee-EEeeeccc-------cceeeeecCCceeeeeccccccc-------CCcccccccCCe-EEEEECCCC
Confidence            334567888886 55555433       34999999886665553322222       456789999998 555543322


Q ss_pred             cccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC--CCCCCcEEecCCceEEeecC
Q 039497          565 VMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG--YENGTPAWHPGNQLDLGKLR  619 (642)
Q Consensus       565 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~--~~~~~~~~s~dg~~~~~~~~  619 (642)
                                     ..|.+++.+|.-+..+....  .....+++.+||+++++..+
T Consensus       222 ---------------~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n  263 (279)
T d1q7fa_         222 ---------------FNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASKD  263 (279)
T ss_dssp             ---------------CEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETT
T ss_pred             ---------------cEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCC
Confidence                           26888887776455544322  23457789999999887643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=0.00021  Score=66.13  Aligned_cols=206  Identities=11%  Similarity=0.011  Sum_probs=128.0

Q ss_pred             ccEEcCCCCEEEEEecCCCceeEEEEECCCCCe----eEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEE
Q 039497          334 FPSFSPDGGLIVFNHDFELNAGIKIAKSDGSKR----WTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIAR  407 (642)
Q Consensus       334 ~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~~----~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~  407 (642)
                      .+.|.+..++|++...  ....|+..++++...    ..+..  ...+..+++.+-++.|+++..      ....+.+++
T Consensus        34 ~id~d~~~~~lYw~D~--~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~------~~~~I~v~~  105 (266)
T d1ijqa1          34 ALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS------VLGTVSVAD  105 (266)
T ss_dssp             EEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET------TTTEEEEEE
T ss_pred             EEEEEeCCCEEEEEEC--CCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEec------CCCEEEeEe
Confidence            4567788888888653  346788888876331    22222  234567888888999999874      245555554


Q ss_pred             EEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC-CCCcc
Q 039497          408 VSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD-GPWID  486 (642)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~-~~~~~  486 (642)
                      +    +      |.    ....+..........+++.|...+|+++... ....|++.++++..    .+.+.. .-...
T Consensus       106 ~----~------g~----~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dGs~----~~~l~~~~~~~p  166 (266)
T d1ijqa1         106 T----K------GV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD----IYSLVTENIQWP  166 (266)
T ss_dssp             T----T------SS----SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCC----EEEEECSSCSCE
T ss_pred             c----C------Cc----eEEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCCCc----eeccccccccee
Confidence            4    3      21    2233322221456678888888888887632 34589999998554    355543 22345


Q ss_pred             cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497          487 TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM  566 (642)
Q Consensus       487 ~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~  566 (642)
                      ..+++++.+++||+.....       ..|..+++++...+.+.......        .....++.++.+||++....   
T Consensus       167 ~gl~iD~~~~~lYw~d~~~-------~~I~~~~~dG~~~~~~~~~~~~~--------~~p~~lav~~~~ly~td~~~---  228 (266)
T d1ijqa1         167 NGITLDLLSGRLYWVDSKL-------HSISSIDVNGGNRKTILEDEKRL--------AHPFSLAVFEDKVFWTDIIN---  228 (266)
T ss_dssp             EEEEEETTTTEEEEEETTT-------TEEEEEETTSCSCEEEEECTTTT--------SSEEEEEEETTEEEEEETTT---
T ss_pred             eEEEeeccccEEEEecCCc-------CEEEEEECCCCCEEEEEeCCCcc--------cccEEEEEECCEEEEEECCC---
Confidence            6789999999999987654       35999999988776665432111        12234566678899887543   


Q ss_pred             cCCCCCCCCCCCCCcEEEEEcCCCc-eeeccC
Q 039497          567 AEPVSWPNQFQPYGDLYVVKLDGSG-LRRLTW  597 (642)
Q Consensus       567 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~lt~  597 (642)
                                   ..|++++..++. .+.+..
T Consensus       229 -------------~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         229 -------------EAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             -------------TEEEEEETTTCCCCEEEEC
T ss_pred             -------------CeEEEEECCCCcceEEEEc
Confidence                         289999876654 444443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.00  E-value=0.00071  Score=57.43  Aligned_cols=226  Identities=17%  Similarity=0.135  Sum_probs=130.1

Q ss_pred             CCEEEEEecCCCceeEEEEECCCCCeeEEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCC
Q 039497          341 GGLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNR  420 (642)
Q Consensus       341 g~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  420 (642)
                      ++.+++.....+..+++.  +++++.+.++.........-.+.=.++.|+..-.   .+...-.++..++  +    .-|
T Consensus        25 ~d~ll~~~~seG~vni~~--l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~---kGkE~Hai~~~Nl--k----~~G   93 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYL--YDGGETVKLNREPINSVLDPHYGVGRVILVRDVS---KGAEQHALFKVNT--S----RPG   93 (313)
T ss_dssp             TTEEEEEEEETTEEEEEE--ESSSSCEECCSSCCSEECEECTTBSEEEEEEECS---TTSCCEEEEEEET--T----STT
T ss_pred             CCcEEEEEeccceEEEEE--EeCCEEEEEecccccCcCCCccCcceEEEEeehh---cCcceeeEEEEcc--C----CCC
Confidence            444555443344555555  4588878887633323333333345677776531   2334445666655  1    013


Q ss_pred             CccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEE
Q 039497          421 EEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAF  500 (642)
Q Consensus       421 ~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~  500 (642)
                           +..++....  .+.-++..-|++.++|+........||.++  +|+    ++.|..-+..  ++.-.=.|++|+=
T Consensus        94 -----EE~~i~spk--~vRI~S~~yddk~vvF~Gased~~~LYvie--gGk----lrkL~~vPpF--sFVtDI~~d~I~G  158 (313)
T d2hu7a1          94 -----EEQRLEAVK--PMRILSGVDTGEAVVFTGATEDRVALYALD--GGG----LRELARLPGF--GFVSDIRGDLIAG  158 (313)
T ss_dssp             -----CEEECTTSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEE--TTE----EEEEEEESSC--EEEEEEETTEEEE
T ss_pred             -----eeeEecCCc--eEEEEEeeecCceEEEecccCCceEEEEEe--CCc----eeeeccCCCc--ceEEeccCCeEEE
Confidence                 455555443  244445566899999988766655666665  677    4776654321  2222234778765


Q ss_pred             EecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCC
Q 039497          501 SSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYG  580 (642)
Q Consensus       501 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  580 (642)
                      .+--..    +...+++.|+.+|+.+.++..  ++       .+..+..+++.+.+ .-....+.              .
T Consensus       159 ~g~~~g----~~~sfF~adl~SG~lri~tpk--eG-------S~~~ay~~~gnKV~-sdyEt~gE--------------s  210 (313)
T d2hu7a1         159 LGFFGG----GRVSLFTSNLSSGGLRVFDSG--EG-------SFSSASISPGMKVT-AGLETARE--------------A  210 (313)
T ss_dssp             EEEEET----TEEEEEEEETTTEEEEEECCS--SE-------EEEEEEECTTSCEE-EEEEESSC--------------E
T ss_pred             EeeecC----CcceEEEEecccCCEEEecCC--CC-------cccceeEccCceee-eccCCCCc--------------e
Confidence            554332    466799999999999988753  44       57788899998862 22222121              1


Q ss_pred             cEEEEEcCCCceeeccCCCCC-----CCC---cEEecCCce-EEeecCC
Q 039497          581 DLYVVKLDGSGLRRLTWNGYE-----NGT---PAWHPGNQL-DLGKLRL  620 (642)
Q Consensus       581 ~l~~~~~~~~~~~~lt~~~~~-----~~~---~~~s~dg~~-~~~~~~~  620 (642)
                      ....+|+..+...++......     ...   +.+.||+++ +++.+..
T Consensus       211 ywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG  259 (313)
T d2hu7a1         211 RLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  259 (313)
T ss_dssp             EEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             EEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCC
Confidence            333557887787777754322     222   348899977 5665543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=0.00066  Score=62.50  Aligned_cols=184  Identities=8%  Similarity=0.011  Sum_probs=101.8

Q ss_pred             CceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEE
Q 039497          374 TAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFR  453 (642)
Q Consensus       374 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~  453 (642)
                      ....+++++||+ ++++..       ....++..+..        ++.    ....+..........+++++||+ |+++
T Consensus        15 ~P~~vavd~dG~-i~v~~~-------~~~~~i~~~~~--------~~~----~~~~~~~~~~~~p~gvav~~~g~-i~v~   73 (260)
T d1rwia_          15 SPSGVAVDSAGN-VYVTSE-------GMYGRVVKLAT--------GST----GTTVLPFNGLYQPQGLAVDGAGT-VYVT   73 (260)
T ss_dssp             CEEEEEECTTCC-EEEEEC-------SSSCEEEEEC----------------CEEECCCCSCCSCCCEEECTTCC-EEEE
T ss_pred             CCCEEEEcCCCC-EEEEEc-------CCCCEEEEEcC--------CCc----eEEEeccCCccCceEEEEcCCCC-EEEe
Confidence            346778999987 555542       12223444433        120    22222222213456789999996 4444


Q ss_pred             eCCCCceeEEEEECCCCccccceeeCCCC-CCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecC
Q 039497          454 SGRSGHKNLFVLDAVNGEFNGDIRQLTDG-PWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAG  532 (642)
Q Consensus       454 ~~~~g~~~l~~~d~~~g~~~~~~~~l~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~  532 (642)
                      ..  ....+.+.+..++.     ..+... ......++++++|+. ++.....       ..+++++..+.........+
T Consensus        74 d~--~~~~i~~~~~~~~~-----~~~~~~~~~~p~~iavd~~g~i-~v~d~~~-------~~~~~~~~~~~~~~~~~~~~  138 (260)
T d1rwia_          74 DF--NNRVVTLAAGSNNQ-----TVLPFDGLNYPEGLAVDTQGAV-YVADRGN-------NRVVKLAAGSKTQTVLPFTG  138 (260)
T ss_dssp             ET--TTEEEEECTTCSCC-----EECCCCSCCSEEEEEECTTCCE-EEEEGGG-------TEEEEECTTCSSCEECCCCS
T ss_pred             ee--eeceeeeeeeccce-----eeeeeeeeeeccccccccccee-Eeecccc-------ccccccccccceeeeeeecc
Confidence            43  22344444333222     222221 223456789999984 4444332       34888888776655443333


Q ss_pred             CCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcCCCceeeccCCC-CCCCCcEEecCC
Q 039497          533 PEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGLRRLTWNG-YENGTPAWHPGN  611 (642)
Q Consensus       533 ~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~-~~~~~~~~s~dg  611 (642)
                      ..        .+..++++++|+ ++++....                ..|+.++.++.....+.... .....++++++|
T Consensus       139 ~~--------~p~~i~~~~~g~-~~v~~~~~----------------~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g  193 (260)
T d1rwia_         139 LN--------DPDGVAVDNSGN-VYVTDTDN----------------NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG  193 (260)
T ss_dssp             CC--------SCCEEEECTTCC-EEEEEGGG----------------TEEEEECTTTCCEEECCCSSCCSEEEEEECTTC
T ss_pred             cC--------CcceeeecCCCC-Eeeecccc----------------ccccccccccceeeeeeccccCCCccceeeeee
Confidence            22        346789999998 55544332                27999998887665554332 334567888999


Q ss_pred             ceEEeec
Q 039497          612 QLDLGKL  618 (642)
Q Consensus       612 ~~~~~~~  618 (642)
                      .++++..
T Consensus       194 ~l~vsd~  200 (260)
T d1rwia_         194 TVYVTEH  200 (260)
T ss_dssp             CEEEEET
T ss_pred             eeeeeec
Confidence            8888764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.71  E-value=0.0076  Score=55.67  Aligned_cols=179  Identities=12%  Similarity=0.146  Sum_probs=95.4

Q ss_pred             cCCCCEEEEEecCCCceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497          338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS  415 (642)
Q Consensus       338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  415 (642)
                      .++....++... .....|..++.++.....+..  ......++..++|+ +++...        ...+++.++.  +  
T Consensus        78 ~~~~~~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~--------~~~~~~~~~~--~--  143 (279)
T d1q7fa_          78 VRNSGDIIVTER-SPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVEC--------KVMRVIIFDQ--N--  143 (279)
T ss_dssp             ETTTTEEEEEEC-GGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEET--------TTTEEEEECT--T--
T ss_pred             cccccccceecc-CCccccccccccccceeecCCCcccccceeccccCCc-EEEEee--------ccceeeEecc--C--
Confidence            344333333332 334567777776654443322  23355677888887 444442        2223444444  2  


Q ss_pred             CCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCCC--CCcccceeEe
Q 039497          416 DDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTDG--PWIDTMPSWS  492 (642)
Q Consensus       416 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~~--~~~~~~~~~s  492 (642)
                          +.    ....+.... ......+++.++|+ |+++...  ...|++++.+ |+.   +..+...  ......++++
T Consensus       144 ----g~----~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~--~~~V~~~d~~-G~~---~~~~g~~g~~~~P~giavD  208 (279)
T d1q7fa_         144 ----GN----VLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR--AHCVKVFNYE-GQY---LRQIGGEGITNYPIGVGIN  208 (279)
T ss_dssp             ----SC----EEEEEECTTTCSSEEEEEECSSSE-EEEEEGG--GTEEEEEETT-CCE---EEEESCTTTSCSEEEEEEC
T ss_pred             ----Cc----eeecccccccccccceeeecccee-EEeeecc--ccceeeeecC-Cce---eeeecccccccCCcccccc
Confidence                21    223321111 13344567888885 5555443  3478999986 554   4555321  1123456899


Q ss_pred             cCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497          493 PKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       493 pdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      ++|+ |+++...+      ...|.+++.++.-...+.......       .+..+++.+||. |+++.
T Consensus       209 ~~G~-i~Vad~~~------~~~v~~f~~~G~~~~~~~~~~~~~-------~p~~vav~~dG~-l~V~~  261 (279)
T d1q7fa_         209 SNGE-ILIADNHN------NFNLTIFTQDGQLISALESKVKHA-------QCFDVALMDDGS-VVLAS  261 (279)
T ss_dssp             TTCC-EEEEECSS------SCEEEEECTTSCEEEEEEESSCCS-------CEEEEEEETTTE-EEEEE
T ss_pred             cCCe-EEEEECCC------CcEEEEECCCCCEEEEEeCCCCCC-------CEeEEEEeCCCc-EEEEe
Confidence            9998 55554322      234888887765445554322222       456788999996 55544

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.64  E-value=0.0064  Score=51.50  Aligned_cols=217  Identities=13%  Similarity=0.131  Sum_probs=127.7

Q ss_pred             cceEEEEeecCCceeeeEEEecCCCCCCCCCceeeecCCc-eeeeeceecCCCCCeEEEEEccCCCcc---eEEEcCC--
Q 039497            4 KGTIVFTTVGRPYYGFDVFSIKSPFVNAPKFHEHRLTDGT-SINFNAQFVDGQDQTIAFISERSGSPR---IYQTRPG--   77 (642)
Q Consensus         4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~rlt~~~-~~~~~~~~S~pDG~~laf~~~~~g~~~---l~~~~~~--   77 (642)
                      ++.++|++.    .||-+=..-+.|     ++.++||..+ +....|..+   =.+|.|..+-.-..+   ||.++..  
T Consensus        25 ~d~ll~~~~----seG~vni~~l~g-----~~~vkLtkePI~~~~~Pk~~---ldfi~f~RDV~kGkE~Hai~~~Nlk~~   92 (313)
T d2hu7a1          25 GDKLLVVGF----SEGSVNAYLYDG-----GETVKLNREPINSVLDPHYG---VGRVILVRDVSKGAEQHALFKVNTSRP   92 (313)
T ss_dssp             TTEEEEEEE----ETTEEEEEEESS-----SSCEECCSSCCSEECEECTT---BSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred             CCcEEEEEe----ccceEEEEEEeC-----CEEEEEecccccCcCCCccC---cceEEEEeehhcCcceeeEEEEccCCC
Confidence            344555533    455555555667     9999999654 333444332   347888776654333   6666655  


Q ss_pred             CCcccccCCCCCCccccccccCCCEEEEEEeccCCCcccccccceEEEEccCCceEecccCCCccCCceeCCCCcEEE-E
Q 039497           78 SSKTELLPSIPCSLFHDRPVARNNKLFFISAHEQPDQIFKSWSALYSTDLKASKFTRLTPYGVVDYSPSVSYSGKFIA-V  156 (642)
Q Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lt~~~~~~~~~~~SPDG~~la-~  156 (642)
                      |+. .++.+.+..+.. ....+|+.++|+.+....       ..||  -+++|+.+.|+.-+.+..--.+  .|++|+ +
T Consensus        93 GEE-~~i~spk~vRI~-S~~yddk~vvF~Gased~-------~~LY--viegGklrkL~~vPpFsFVtDI--~~d~I~G~  159 (313)
T d2hu7a1          93 GEE-QRLEAVKPMRIL-SGVDTGEAVVFTGATEDR-------VALY--ALDGGGLRELARLPGFGFVSDI--RGDLIAGL  159 (313)
T ss_dssp             TCE-EECTTSCSBEEE-EEEECSSCEEEEEECSSC-------EEEE--EEETTEEEEEEEESSCEEEEEE--ETTEEEEE
T ss_pred             Cee-eEecCCceEEEE-EeeecCceEEEecccCCc-------eEEE--EEeCCceeeeccCCCcceEEec--cCCeEEEE
Confidence            432 122222222110 223388999999886532       1455  6689999999876654322223  388988 3


Q ss_pred             EecCCCCCCCCCCCCeeeEEEEEecCCCceeEeecCCC--cceEeeCCeEEEEEecCCCceEEEEEecCCCcccccCCcc
Q 039497          157 ASYESRPWPGEFHELNTDIVVFQESDPNKRVIVCERGG--WPTWSGDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIA  234 (642)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~--~~~wspdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~  234 (642)
                      .-..+         +..++|+-++.+|..+-++...+.  .+..+++.++ .+....-|...+..+|+..+        .
T Consensus       160 g~~~g---------~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~--------~  221 (313)
T d2hu7a1         160 GFFGG---------GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDG--------S  221 (313)
T ss_dssp             EEEET---------TEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTC--------C
T ss_pred             eeecC---------CcceEEEEecccCCEEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccC--------c
Confidence            22222         466799999999988888876663  5677888887 33222234444446788877        5


Q ss_pred             ceeeCCCCC-----ccccce---eecCCcEEEEEEec
Q 039497          235 PTRVTPPGV-----HCFTPA---AFHDGKRLAVATRR  263 (642)
Q Consensus       235 ~~~l~~~~~-----~~~~~~---~SpdG~~l~~~~~~  263 (642)
                      .+++.-+..     ....+.   ..||++.++.+.++
T Consensus       222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrd  258 (313)
T d2hu7a1         222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE  258 (313)
T ss_dssp             EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred             eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecC
Confidence            677765532     222223   47999866665443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.60  E-value=0.0026  Score=60.93  Aligned_cols=293  Identities=11%  Similarity=0.041  Sum_probs=138.0

Q ss_pred             eCCeEEEEEecCCCceEEEEEecCCCcccccCCccceee-CCCCC-ccccceeecCCcEEEEEE--ecc-----------
Q 039497          200 GDSTIYFHRQADDGWWSIFRVSFPENLEFLGFPIAPTRV-TPPGV-HCFTPAAFHDGKRLAVAT--RRK-----------  264 (642)
Q Consensus       200 pdg~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~-~~~~~~~SpdG~~l~~~~--~~~-----------  264 (642)
                      +||+.+|+.+..++  +|.++++++-        +..++ ..+.. ....++.+++++..++..  ...           
T Consensus        97 yDGrylFVNDkan~--RVAvIdl~~f--------kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~  166 (459)
T d1fwxa2          97 YDGRFLFMNDKANT--RVARVRCDVM--------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  166 (459)
T ss_dssp             EEEEEEEEEETTTT--EEEEEETTTT--------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             cceeEEEEEcCCCc--eEEEEECcce--------eeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence            47888888854444  8899998886        33332 22221 222234444554433322  111           


Q ss_pred             --CCceeeEEEEEeec-------CCCCcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCC-ceeEEeeeCCCc
Q 039497          265 --NRNFRHIEIYDLTL-------NPNFHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPV-KELRMLRLNGSF  334 (642)
Q Consensus       265 --~~~~~~i~~~d~~~-------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  334 (642)
                        ......+...|...       ..........+++||+++++.....+..      ..+....... ..+...... ..
T Consensus       167 d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g------~~l~e~ta~e~D~i~V~n~~-ri  239 (459)
T d1fwxa2         167 DVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKG------MTLPEMTAAEMDHIVVFNIA-EI  239 (459)
T ss_dssp             CGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCC------SSHHHHTCCSEEEEEEEEHH-HH
T ss_pred             chhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCC------cchhhcccccceEEEEechH-Hh
Confidence              11222344455411       1122345678999999888876544421      1111111111 111111000 11


Q ss_pred             cEEcCCCCEEEEEecCCCceeEEEEECCC---CCee-EEeecCCceeeeeecCCCEEEEEEcCCCcccCCCeEEEEEEEe
Q 039497          335 PSFSPDGGLIVFNHDFELNAGIKIAKSDG---SKRW-TLIKDRTAFYNSWSPTEKHVIYTSTGPIFQSERATVQIARVSF  410 (642)
Q Consensus       335 ~~~spdg~~l~~~~~~~~~~~l~~~d~~~---~~~~-~l~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~  410 (642)
                      ....++|+.-..       +.+-++|...   .... .+......+.+..||||++++....      -+..+.++++.-
T Consensus       240 e~av~~Gk~~ei-------ngV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGK------Ls~tVSViD~~K  306 (459)
T d1fwxa2         240 EKAIAAGDYQEL-------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK------LSPTVTVLDVTR  306 (459)
T ss_dssp             HHHHHHTCSEEE-------TTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECT------TSSBEEEEEGGG
T ss_pred             HHhhhcCCcEEe-------CCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCC------cCCcEEEEEehh
Confidence            122445543222       2344555432   2222 2333667889999999999988874      367778877631


Q ss_pred             ecCCCCCCCCCccccceEEccccC-CCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCC------ccccc-eeeCCCC
Q 039497          411 QLDPSDDNNREEIPCDVKILTKEE-TGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNG------EFNGD-IRQLTDG  482 (642)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g------~~~~~-~~~l~~~  482 (642)
                      - +.... .+.. +.... ....+ .-...+-+|..+|  -+|++.- -.++|..|+++..      +.+.. +..+.-+
T Consensus       307 i-~~~~~-~~~~-~~~~~-~~e~elglgPLht~fd~~g--~aytslf-ids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~  379 (459)
T d1fwxa2         307 F-DAVFY-ENAD-PRSAV-VAEPELGLGPLHTAFDGRG--NAYTSLF-LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH  379 (459)
T ss_dssp             H-HHHHH-SCC--GGGGE-EECCBCCSCEEEEEECTTS--EEEEEET-TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred             h-hhhhc-ccCC-ccccE-EeecccCcCccccccCCCc--eEEEEee-ccceEEEEecchhhhhhccccCCcceeccccc
Confidence            0 00000 0000 00000 00000 0123345675555  5777643 2358999998532      11000 1222221


Q ss_pred             CCcccce------eEecCCCEEEEEecCCCCC-----CCCceeEEEEeCCCCceEEeee
Q 039497          483 PWIDTMP------SWSPKGDLIAFSSNRHNPD-----NVEAFSLYVIKPDGSGLRRIHV  530 (642)
Q Consensus       483 ~~~~~~~------~~spdG~~l~~~~~~~~~~-----~~~~~~l~~~d~~~~~~~~l~~  530 (642)
                       +...+.      .-.|||++|+....-...+     --....--++|+.+.+.+.+..
T Consensus       380 -y~~gh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~m~l~~d  437 (459)
T d1fwxa2         380 -YQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHD  437 (459)
T ss_dssp             -SCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEE
T ss_pred             -cCCCCCccCcCCcCCCCCCEEEEecccccccccCCCCCCCccceEEEcCCCeeEEEec
Confidence             111111      4589999999887543211     0122335578888887776654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.20  E-value=0.0048  Score=59.10  Aligned_cols=161  Identities=13%  Similarity=0.022  Sum_probs=88.7

Q ss_pred             cCCCCEEEEEecCCCceeEEEEECCCCCeeEEee---cCCceeeeeecCCCEEEEEEcCC--Ccc---------cCCCeE
Q 039497          338 SPDGGLIVFNHDFELNAGIKIAKSDGSKRWTLIK---DRTAFYNSWSPTEKHVIYTSTGP--IFQ---------SERATV  403 (642)
Q Consensus       338 spdg~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~--~~~---------~~~~~~  403 (642)
                      .+||++|+...  ....+|-++|++.-+..++..   ....+.+...++++..++....+  ...         ......
T Consensus        96 tyDGrylFVND--kan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          96 KYDGRFLFMND--KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEEEE--TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             ccceeEEEEEc--CCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            45888776655  456889999999988777665   34555566666666555444221  000         011223


Q ss_pred             EEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCC------------ce-----------
Q 039497          404 QIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSG------------HK-----------  460 (642)
Q Consensus       404 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g------------~~-----------  460 (642)
                      .+..++.  +      ..+   ...++.-.  +......++|||+|+++++....            ..           
T Consensus       174 ~~t~ID~--~------tm~---V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie  240 (459)
T d1fwxa2         174 VFTAVDA--D------KWE---VAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  240 (459)
T ss_dssp             EEEEEET--T------TTE---EEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             EEEEEec--C------Cce---EEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence            3445555  2      211   22233222  35567899999999999874321            11           


Q ss_pred             ------------eEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          461 ------------NLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       461 ------------~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                                  .+-++|..+......++.|.. +.....+..||||++++.++.-.       ..+-++|++
T Consensus       241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs-------~tVSViD~~  305 (459)
T d1fwxa2         241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLS-------PTVTVLDVT  305 (459)
T ss_dssp             HHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTS-------SBEEEEEGG
T ss_pred             HhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcC-------CcEEEEEeh
Confidence                        122334322100000111221 12345679999999998887644       348888874

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.71  E-value=0.014  Score=55.31  Aligned_cols=176  Identities=9%  Similarity=0.049  Sum_probs=93.8

Q ss_pred             CceeEEEEECCCCCeeE--Eee-cC-------Cceee--eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCCCCCC
Q 039497          352 LNAGIKIAKSDGSKRWT--LIK-DR-------TAFYN--SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPSDDNN  419 (642)
Q Consensus       352 ~~~~l~~~d~~~~~~~~--l~~-~~-------~~~~~--~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  419 (642)
                      ..+.|+++|++......  +.. ..       ....+  .-.+||+..+++-+..   .....+.++.+..  +      
T Consensus        66 ~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~---~~~~~ieif~~~~--~------  134 (340)
T d1v04a_          66 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP---GSSSTVEVFKFQE--E------  134 (340)
T ss_dssp             CCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECS---TTCCEEEEEEEET--T------
T ss_pred             CCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEecc---CCCceeEEEEEeC--C------
Confidence            35789999987765333  222 11       11222  2245677555544321   2356788888866  2      


Q ss_pred             CCccccceEEccccCCCCccCcEECCCCCeEEEEeCCC---------------CceeEEEEECCCCccccceeeCCCCCC
Q 039497          420 REEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRS---------------GHKNLFVLDAVNGEFNGDIRQLTDGPW  484 (642)
Q Consensus       420 ~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~---------------g~~~l~~~d~~~g~~~~~~~~l~~~~~  484 (642)
                      +.++. -...+..........+++..||. ++++....               ....++.++.  ++    .+.+...-.
T Consensus       135 ~~~l~-~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~----~~~~~~~l~  206 (340)
T d1v04a_         135 EKSLL-HLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND----VRVVAEGFD  206 (340)
T ss_dssp             TTEEE-EEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SC----EEEEEEEES
T ss_pred             CCeEE-EEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcC--Cc----eEEEcCCCC
Confidence            21110 11222322223455677777885 55553211               2345666654  33    244433334


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCc-eEEeeecCCCCCCCcccccccceEEcCCCCEEEEEE
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSG-LRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTA  560 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~  560 (642)
                      ..+.+++|||+++|+++.....       +|+++++++.. .+........+       .+..+.+.+++..++...
T Consensus       207 ~pNGI~~s~d~~~lyVa~t~~~-------~i~~y~~~~~~~l~~~~~~~l~~-------~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         207 FANGINISPDGKYVYIAELLAH-------KIHVYEKHANWTLTPLRVLSFDT-------LVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGT-------EEEEEEECTTSCEEEEEEEECSS-------EEEEEEECTTTCCEEEEE
T ss_pred             ccceeEECCCCCEEEEEeCCCC-------eEEEEEeCCCcccceEEEecCCC-------CCCccEEecCCCEEEEEE
Confidence            5678899999999999987653       48888886543 22222212333       456788876443344444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.38  E-value=1.1  Score=41.58  Aligned_cols=114  Identities=12%  Similarity=0.033  Sum_probs=63.4

Q ss_pred             cCCCCEEEEEecC---CCceeEEEEECCCCCeeEEee-----cCCceeeeeecCCCEEEEEEcCCCc---------ccCC
Q 039497          338 SPDGGLIVFNHDF---ELNAGIKIAKSDGSKRWTLIK-----DRTAFYNSWSPTEKHVIYTSTGPIF---------QSER  400 (642)
Q Consensus       338 spdg~~l~~~~~~---~~~~~l~~~d~~~~~~~~l~~-----~~~~~~~~~spdg~~l~~~~~~~~~---------~~~~  400 (642)
                      .+||+..+|+...   ....+|+.++.++.+.+.+..     .....++.+..+|+ ++++......         ....
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~  185 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGL  185 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcC
Confidence            5677755554331   223455566655554333322     23456788888886 5555321000         0112


Q ss_pred             CeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCC
Q 039497          401 ATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVN  469 (642)
Q Consensus       401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~  469 (642)
                      ....++..+.         +     ..+.+...- .....+++|||+++|+++....  .+|++++++.
T Consensus       186 ~~g~v~~~~~---------~-----~~~~~~~~l-~~pNGI~~s~d~~~lyVa~t~~--~~i~~y~~~~  237 (340)
T d1v04a_         186 AWSFVTYYSP---------N-----DVRVVAEGF-DFANGINISPDGKYVYIAELLA--HKIHVYEKHA  237 (340)
T ss_dssp             CCEEEEEECS---------S-----CEEEEEEEE-SSEEEEEECTTSSEEEEEEGGG--TEEEEEEECT
T ss_pred             CceeEEEEcC---------C-----ceEEEcCCC-CccceeEECCCCCEEEEEeCCC--CeEEEEEeCC
Confidence            3445566544         2     344444433 4567799999999999888643  4677777763

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.36  E-value=2.1  Score=40.08  Aligned_cols=121  Identities=12%  Similarity=0.018  Sum_probs=69.7

Q ss_pred             ceeCCCCcEEEEEecCCCCCCCCCCCCeeeEEEEEecCCCceeEee---cCCC---cceEeeCCeEEEEEecCCCceEEE
Q 039497          145 PSVSYSGKFIAVASYESRPWPGEFHELNTDIVVFQESDPNKRVIVC---ERGG---WPTWSGDSTIYFHRQADDGWWSIF  218 (642)
Q Consensus       145 ~~~SPDG~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~~~~---~~~wspdg~~~~~~~~~~g~~~l~  218 (642)
                      .....|||.++|........... ......+++||+.+++..++..   .+..   ..++.+||++++....  +...++
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~-~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~--~~~~~~  101 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGS-PGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN--DAKKTS  101 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSC-CCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS--STTCEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCC-CCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecC--CCccee
Confidence            45677899888876543211111 1123457899999998765543   2221   2378899998887622  223566


Q ss_pred             EEecCCCcccccCCccceeeCCC--CCccccceeecCCcEEEEEEecc-CCceeeEEEEEe
Q 039497          219 RVSFPENLEFLGFPIAPTRVTPP--GVHCFTPAAFHDGKRLAVATRRK-NRNFRHIEIYDL  276 (642)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~SpdG~~l~~~~~~~-~~~~~~i~~~d~  276 (642)
                      .+|+.+.        .-..+...  .......+..+||+.+++..... +.....+++||.
T Consensus       102 ~yd~~~~--------~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~  154 (387)
T d1k3ia3         102 LYDSSSD--------SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  154 (387)
T ss_dssp             EEEGGGT--------EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             EecCccC--------cccccccccccccccceeeecCCceeeeccccccccccceeeeecC
Confidence            7777776        33444332  22233455678999777744322 233456777776

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.33  E-value=0.4  Score=46.90  Aligned_cols=183  Identities=14%  Similarity=0.127  Sum_probs=90.6

Q ss_pred             ceEEccccCCCCccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccccceeeCCC------CCCcccceeEecC---CC
Q 039497          426 DVKILTKEETGNNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFNGDIRQLTD------GPWIDTMPSWSPK---GD  496 (642)
Q Consensus       426 ~~~~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~~~~~l~~------~~~~~~~~~~spd---G~  496 (642)
                      +.+.+...- .....++|.|||+.++ +....  ..|++++.++++. ..+..+..      .......++++||   ..
T Consensus        18 ~~~~ia~~L-~~P~~la~~pdg~llV-ter~~--G~i~~v~~~~g~~-~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~   92 (450)
T d1crua_          18 DKKVILSNL-NKPHALLWGPDNQIWL-TERAT--GKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP   92 (450)
T ss_dssp             CEEEEECCC-SSEEEEEECTTSCEEE-EETTT--CEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred             EEEEEECCC-CCceEEEEeCCCeEEE-EEecC--CEEEEEECCCCcE-eecccCCccccccCCCCceeeEEeCCCCccCC
Confidence            445555443 4567899999997554 43222  3799999887764 11222221      1122345788874   45


Q ss_pred             EEEEEecCCCC-----CCCCceeEEEEeCCCCce-----EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcc
Q 039497          497 LIAFSSNRHNP-----DNVEAFSLYVIKPDGSGL-----RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVM  566 (642)
Q Consensus       497 ~l~~~~~~~~~-----~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~  566 (642)
                      +|++.......     .......+.++..+....     +.+....... +   ......+.|.|||+ ||++..+.+..
T Consensus        93 ~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~-~---~H~gg~l~fgpDG~-LYvs~Gd~~~~  167 (450)
T d1crua_          93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-K---DHQSGRLVIGPDQK-IYYTIGDQGRN  167 (450)
T ss_dssp             EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-S---SCCEEEEEECTTSC-EEEEECCTTTT
T ss_pred             EEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeeccccc-c---cccccceeEcCCCC-EEEEecCCCcc
Confidence            56654331110     011223344444433321     1111110000 0   01346899999996 66666543211


Q ss_pred             cCC-CCC---------------CCCCCCCCcEEEEEcCCCce-----------eeccCCCCCCCCcEEecCCceEEeec
Q 039497          567 AEP-VSW---------------PNQFQPYGDLYVVKLDGSGL-----------RRLTWNGYENGTPAWHPGNQLDLGKL  618 (642)
Q Consensus       567 ~~~-~~~---------------~~~~~~~~~l~~~~~~~~~~-----------~~lt~~~~~~~~~~~s~dg~~~~~~~  618 (642)
                      ... ..+               ...-...+.|.+++.++..+           ...+..-.....++|+|+|+++++..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~l~~~e~  246 (450)
T d1crua_         168 QLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQ  246 (450)
T ss_dssp             SGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEE
T ss_pred             cccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccceeeeccc
Confidence            000 000               00111246888888877542           11222223446789999999887643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.95  E-value=3.5  Score=41.18  Aligned_cols=83  Identities=10%  Similarity=0.016  Sum_probs=45.5

Q ss_pred             eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV  539 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  539 (642)
                      ..|..+|+.+|+.   +-+.... ........+-+|..|+....++        .|+.+|.++|+..=-.......    
T Consensus       457 G~l~AiD~~tGk~---~W~~~~~-~p~~gg~lstagglVF~G~~dg--------~l~A~Da~TGe~LW~~~~~~~~----  520 (573)
T d1kb0a2         457 GRLLAWDPVAQKA---AWSVEHV-SPWNGGTLTTAGNVVFQGTADG--------RLVAYHAATGEKLWEAPTGTGV----  520 (573)
T ss_dssp             EEEEEEETTTTEE---EEEEEES-SSCCCCEEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC----
T ss_pred             ccEEEeCCCCCce---EeeecCC-CCCCCceEEEcCCEEEEECCCC--------eEEEEECCCCcEeEEEECCCCc----
Confidence            4789999999986   2222221 1112234455666554433333        3899999988763212211111    


Q ss_pred             ccccccceEEcCCCCE-EEEEEe
Q 039497          540 DRERINHVCFSADGEW-LLFTAN  561 (642)
Q Consensus       540 ~~~~~~~~~~S~Dg~~-l~~~~~  561 (642)
                         ....+.|..||+. |++.+.
T Consensus       521 ---~~~P~ty~~~GkQYv~v~~G  540 (573)
T d1kb0a2         521 ---VAAPSTYMVDGRQYVSVAVG  540 (573)
T ss_dssp             ---CSCCEEEEETTEEEEEEEEC
T ss_pred             ---cccCEEEEECCEEEEEEEeC
Confidence               2234678889974 455554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.35  E-value=0.8  Score=43.26  Aligned_cols=127  Identities=12%  Similarity=0.016  Sum_probs=76.8

Q ss_pred             cEECCCCCeEEEEeCCC--------CceeEEEEECCCCccccceeeC----CCCCCcccceeEecCCCEEEEEecCCCCC
Q 039497          441 PSCSPDGKFLVFRSGRS--------GHKNLFVLDAVNGEFNGDIRQL----TDGPWIDTMPSWSPKGDLIAFSSNRHNPD  508 (642)
Q Consensus       441 ~~~SpDg~~l~~~~~~~--------g~~~l~~~d~~~g~~~~~~~~l----~~~~~~~~~~~~spdG~~l~~~~~~~~~~  508 (642)
                      .....|||.++|.....        ....+++||+.+++.    ..+    +.........++.+||+.+++.....   
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w----~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~---   97 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV----SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---   97 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB----CCCEEEECSCCCSSCEEEECTTSCEEEECSSST---
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcE----eecCCCCCCcccceeEEEEecCCcEEEeecCCC---
Confidence            45566888888766421        122578999998875    322    12222223457889998766554432   


Q ss_pred             CCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497          509 NVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD  588 (642)
Q Consensus       509 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  588 (642)
                          ..+++||..+.....+.......       .....+..+||+.+++........           ....++.||..
T Consensus        98 ----~~~~~yd~~~~~w~~~~~~~~~r-------~~~~~~~~~dG~v~v~GG~~~~~~-----------~~~~v~~yd~~  155 (387)
T d1k3ia3          98 ----KKTSLYDSSSDSWIPGPDMQVAR-------GYQSSATMSDGRVFTIGGSWSGGV-----------FEKNGEVYSPS  155 (387)
T ss_dssp             ----TCEEEEEGGGTEEEECCCCSSCC-------SSCEEEECTTSCEEEECCCCCSSS-----------CCCCEEEEETT
T ss_pred             ----cceeEecCccCcccccccccccc-------cccceeeecCCceeeecccccccc-----------ccceeeeecCC
Confidence                23889999888777655432221       234567788999777765332211           23478889988


Q ss_pred             CCceeecc
Q 039497          589 GSGLRRLT  596 (642)
Q Consensus       589 ~~~~~~lt  596 (642)
                      ...-..+.
T Consensus       156 ~~~W~~~~  163 (387)
T d1k3ia3         156 SKTWTSLP  163 (387)
T ss_dssp             TTEEEEET
T ss_pred             CCceeecC
Confidence            77655443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=3.4  Score=36.59  Aligned_cols=224  Identities=5%  Similarity=-0.126  Sum_probs=100.8

Q ss_pred             ceeEEEEECCCCCeeEEee--cCCceeeeeecCCCEEEEEEcCC--CcccCCCeEEEEEEEeecCCCCCCCCCccccceE
Q 039497          353 NAGIKIAKSDGSKRWTLIK--DRTAFYNSWSPTEKHVIYTSTGP--IFQSERATVQIARVSFQLDPSDDNNREEIPCDVK  428 (642)
Q Consensus       353 ~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  428 (642)
                      ...++++|.++++..++..  .....+....-+++.+++.....  ........  ++..+.  .     ..     ..+
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~--~~~yd~--~-----~~-----~w~   83 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSA--LDCYNP--M-----TN-----QWS   83 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCC--EEEEET--T-----TT-----EEE
T ss_pred             CceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccch--hhhccc--c-----cc-----ccc
Confidence            4578899999988777654  11222222233444333322100  00001122  334433  1     11     444


Q ss_pred             EccccCCCCccCcEECCCCCeEEEEeCCCC--ceeEEEEECCCCccccceeeCCCCCCcccceeE-ecCCCEEEEEecCC
Q 039497          429 ILTKEETGNNAFPSCSPDGKFLVFRSGRSG--HKNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSW-SPKGDLIAFSSNRH  505 (642)
Q Consensus       429 ~l~~~~~~~~~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~-spdG~~l~~~~~~~  505 (642)
                      .+.........+....-+++.+++......  ....+.++..+...    ............... .-+++ +++.....
T Consensus        84 ~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~-~~~~GG~~  158 (288)
T d1zgka1          84 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTRRIGVGVAVLNRL-LYAVGGFD  158 (288)
T ss_dssp             ECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETTE-EEEECCBC
T ss_pred             ccccccceecceeccccceeeEEecceecccccceeeeeccccCcc----ccccccccccccceeeeeeec-ceEecCcc
Confidence            444333223333344446655444321111  22566788877663    333332222222222 22344 44443322


Q ss_pred             CCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEE
Q 039497          506 NPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV  585 (642)
Q Consensus       506 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  585 (642)
                      .  ......++.+|+...+..........        .........+++.+++.......            ....++.+
T Consensus       159 ~--~~~~~~~~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~i~GG~~~~~------------~~~~~~~~  216 (288)
T d1zgka1         159 G--TNRLNSAECYYPERNEWRMITAMNTI--------RSGAGVCVLHNCIYAAGGYDGQD------------QLNSVERY  216 (288)
T ss_dssp             S--SCBCCCEEEEETTTTEEEECCCCSSC--------CBSCEEEEETTEEEEECCBCSSS------------BCCCEEEE
T ss_pred             c--ccccceEEEeeccccccccccccccc--------cccccccceeeeEEEecCccccc------------cccceeee
Confidence            1  12445689999987766554432211        11223333445544443333221            13378899


Q ss_pred             EcCCCceeeccCCCCC-CCCcEEecCCceEEee
Q 039497          586 KLDGSGLRRLTWNGYE-NGTPAWHPGNQLDLGK  617 (642)
Q Consensus       586 ~~~~~~~~~lt~~~~~-~~~~~~s~dg~~~~~~  617 (642)
                      +........+...... ...-+..-++++++..
T Consensus       217 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~G  249 (288)
T d1zgka1         217 DVETETWTFVAPMKHRRSALGITVHQGRIYVLG  249 (288)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred             eecceeeecccCccCcccceEEEEECCEEEEEe
Confidence            9988887777643222 1122334577777643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.35  E-value=3.6  Score=36.73  Aligned_cols=231  Identities=10%  Similarity=0.093  Sum_probs=122.6

Q ss_pred             CcEEEEEEeccCCceeeEEEEEeecCCC-----CcccCCeecCCCCEEEEEEeecCCCCCCcccceEeeccCCCceeEEe
Q 039497          254 GKRLAVATRRKNRNFRHIEIYDLTLNPN-----FHHYNPFVSANSEFIGYHRFRGESTEGQSTIPHLEPVASPVKELRML  328 (642)
Q Consensus       254 G~~l~~~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (642)
                      .|++.+ +. .......+.+.|+.....     .........|..+.|++..  +       ..+.+.+++.+ .++...
T Consensus        32 DkyicV-Re-~~~~~~~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiALra--g-------~~LQiFnletK-~klks~   99 (327)
T d1utca2          32 DKFICI-RE-KVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA--G-------KTLQIFNIEMK-SKMKAH   99 (327)
T ss_dssp             SSEEEE-EE-EETTEEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEE--T-------TEEEEEETTTT-EEEEEE
T ss_pred             CCEEEE-Ee-ccCCCceEEEEECCCCCcceecccchhhhhcCCCCcEEEEec--C-------CeEEEEehhHh-hhhceE
Confidence            355555 33 223456888999832221     1223445678888888864  2       23445555444 222222


Q ss_pred             eeCC--CccEEcCCCCEEEEEecCCCceeEEEEECCCCC-eeEEee------cCCceeeeeecCCCEEEEEEcCCCcccC
Q 039497          329 RLNG--SFPSFSPDGGLIVFNHDFELNAGIKIAKSDGSK-RWTLIK------DRTAFYNSWSPTEKHVIYTSTGPIFQSE  399 (642)
Q Consensus       329 ~~~~--~~~~~spdg~~l~~~~~~~~~~~l~~~d~~~~~-~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~  399 (642)
                      ....  .+=.|-. .+.|+++..    ..+|-+++++.. +..+..      +.-+-...-++|+++++...-...-..-
T Consensus       100 ~~~e~VvfWkWis-~~~L~lVT~----taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i  174 (327)
T d1utca2         100 TMTDDVTFWKWIS-LNTVALVTD----NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRV  174 (327)
T ss_dssp             ECSSCCCEEEESS-SSEEEEECS----SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEE
T ss_pred             EcCCCcEEEEecC-CCEEEEEcC----CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCce
Confidence            2222  2334543 345888764    689999997643 333333      2235566788999999876542111112


Q ss_pred             CCeEEEEEEEeecCCCCCCCCCccccceEEccccCCCCccCcEECCCC-----CeEEEEeCCCCceeEEEEECCCCcc--
Q 039497          400 RATVQIARVSFQLDPSDDNNREEIPCDVKILTKEETGNNAFPSCSPDG-----KFLVFRSGRSGHKNLFVLDAVNGEF--  472 (642)
Q Consensus       400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDg-----~~l~~~~~~~g~~~l~~~d~~~g~~--  472 (642)
                      .+.++||.++.  +            ..+.|..+. ...  ..+--+|     +-++|+........|+++++.+...  
T Consensus       175 ~G~mQLYS~er--~------------~sQ~ieGha-a~F--~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~  237 (327)
T d1utca2         175 VGAMQLYSVDR--K------------VSQPIEGHA-ASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN  237 (327)
T ss_dssp             EEEEEEEETTT--T------------EEEEECCSE-EEE--EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTC
T ss_pred             eEEEEEEEecc--C------------cCcccccee-eee--EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCC
Confidence            45677777654  1            334443332 221  1222222     2456665433446899999876321  


Q ss_pred             -c--cceeeCCCCCCcc----cceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceE
Q 039497          473 -N--GDIRQLTDGPWID----TMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLR  526 (642)
Q Consensus       473 -~--~~~~~l~~~~~~~----~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~  526 (642)
                       +  +....+.-.+...    -....|+.-..|+.....+-        |++||+.++..-
T Consensus       238 ~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~--------i~lyDleTgt~i  290 (327)
T d1utca2         238 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY--------IHLYDLETGTCI  290 (327)
T ss_dssp             CCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSE--------EEEEETTTCCEE
T ss_pred             CCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcE--------EEEEEcccccEE
Confidence             0  2222332222111    22367777777777776654        999999987653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.02  E-value=4.6  Score=37.23  Aligned_cols=153  Identities=12%  Similarity=0.144  Sum_probs=83.0

Q ss_pred             CEEEEEecCCCceeEEEEECCCCCeeEEeecCCceee------eeecCCCEEEEEEcCCCcccCCCeEEEEEEEeecCCC
Q 039497          342 GLIVFNHDFELNAGIKIAKSDGSKRWTLIKDRTAFYN------SWSPTEKHVIYTSTGPIFQSERATVQIARVSFQLDPS  415 (642)
Q Consensus       342 ~~l~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~------~~spdg~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~  415 (642)
                      +.|++...  .+..|+++|++|.+...+.. +.+..+      ...-...-|++.+++.   .....+.+|.++.  .  
T Consensus        40 ~SlI~gTd--K~~Gl~vYdL~G~~l~~~~~-Gr~NNVDvr~~~~l~~~~~di~vasnR~---~~~~~l~~~~id~--~--  109 (353)
T d1h6la_          40 NSKLITTN--KKSGLAVYSLEGKMLHSYHT-GKLNNVDIRYDFPLNGKKVDIAAASNRS---EGKNTIEIYAIDG--K--  109 (353)
T ss_dssp             GCEEEEEE--TTSCCEEEETTCCEEEECCS-SCEEEEEEEEEEEETTEEEEEEEEEECC---TTTCEEEEEEEET--T--
T ss_pred             ccEEEEEc--CcCCEEEEcCCCcEEEeccc-CCcCccccccccccCCcceEEEEEeCCc---CcceeEEEEEecC--c--
Confidence            34566553  34579999998776555432 222222      2222223356666430   1234677888865  2  


Q ss_pred             CCCCCCccccceEEccccC------CCCccCcEE--CC-CCCeEEEEeCCCCceeEEEEECC-CCccc-cceeeCCCCCC
Q 039497          416 DDNNREEIPCDVKILTKEE------TGNNAFPSC--SP-DGKFLVFRSGRSGHKNLFVLDAV-NGEFN-GDIRQLTDGPW  484 (642)
Q Consensus       416 ~~~~~~~~~~~~~~l~~~~------~~~~~~~~~--Sp-Dg~~l~~~~~~~g~~~l~~~d~~-~g~~~-~~~~~l~~~~~  484 (642)
                         .+     ....+....      ...+..+.+  +| +|+..+|...+.|....|.+... .|... ..++.+... .
T Consensus       110 ---~~-----~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-~  180 (353)
T d1h6la_         110 ---NG-----TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-S  180 (353)
T ss_dssp             ---TT-----EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-S
T ss_pred             ---cc-----ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-C
Confidence               12     233332211      023445555  65 46677888888786666665543 33320 112333322 3


Q ss_pred             cccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCC
Q 039497          485 IDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPD  521 (642)
Q Consensus       485 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~  521 (642)
                      ....+++..+.+.|++.....        .||+++.+
T Consensus       181 q~EGCVvDde~~~LyisEE~~--------Giw~~~a~  209 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEEDE--------AIWKFSAE  209 (353)
T ss_dssp             CEEEEEEETTTTEEEEEETTT--------EEEEEESS
T ss_pred             ccceEEEeCCCCcEEEecCcc--------ceEEEEec
Confidence            467789999888888886654        38888764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.84  E-value=14  Score=36.42  Aligned_cols=83  Identities=14%  Similarity=0.060  Sum_probs=44.5

Q ss_pred             eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV  539 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  539 (642)
                      ..|.-+|+.+|+.   +-+.... .....-..+-.|..| |.....       ..|+-+|.++|+.-=-.......    
T Consensus       438 G~l~A~D~~tGk~---~W~~~~~-~~~~gg~l~TagglV-F~G~~d-------g~l~A~Da~tGe~LW~~~l~~~~----  501 (560)
T d1kv9a2         438 GALLAWDPVKQKA---AWKVPYP-THWNGGTLSTAGNLV-FQGTAA-------GQMHAYSADKGEALWQFEAQSGI----  501 (560)
T ss_dssp             EEEEEEETTTTEE---EEEEEES-SSCCCCEEEETTTEE-EEECTT-------SEEEEEETTTCCEEEEEECSSCC----
T ss_pred             cceEEEeCCCCeE---eeeccCC-CCCCCceeEECCCEE-EEECCC-------CcEEEEECCCCcEeEEEECCCCc----
Confidence            4788899999985   2332222 111222344455544 444332       23899999988764222212111    


Q ss_pred             ccccccceEEcCCCCE-EEEEEe
Q 039497          540 DRERINHVCFSADGEW-LLFTAN  561 (642)
Q Consensus       540 ~~~~~~~~~~S~Dg~~-l~~~~~  561 (642)
                         ...-+++..||+. |++.+.
T Consensus       502 ---~~~P~ty~~dGkqyv~v~aG  521 (560)
T d1kv9a2         502 ---VAAPMTFELAGRQYVAIMAG  521 (560)
T ss_dssp             ---CSCCEEEEETTEEEEEEEEC
T ss_pred             ---cccCEEEEECCEEEEEEEeC
Confidence               2244678899974 555554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.09  E-value=22  Score=35.13  Aligned_cols=83  Identities=14%  Similarity=0.118  Sum_probs=47.2

Q ss_pred             eeEEEEECCCCccccceeeCCCCCCcccceeEecCCCEEEEEecCCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCc
Q 039497          460 KNLFVLDAVNGEFNGDIRQLTDGPWIDTMPSWSPKGDLIAFSSNRHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDV  539 (642)
Q Consensus       460 ~~l~~~d~~~g~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  539 (642)
                      ..|+.+|+.+|+.   +-+.... .....-..+-.|..|+..+.++        .++-+|.++|++.=-.......    
T Consensus       466 G~l~AiD~~TG~i---~W~~~~~-~p~~~g~lstagglVF~Gt~dg--------~l~A~Da~TGe~LW~~~~~~~~----  529 (582)
T d1flga_         466 GSLRAMDPVSGKV---VWEHKEH-LPLWAGVLATAGNLVFTGTGDG--------YFKAFDAKSGKELWKFQTGSGI----  529 (582)
T ss_dssp             EEEEEECTTTCCE---EEEEEES-SCCCSCCEEETTTEEEEECTTS--------EEEEEETTTCCEEEEEECSSCC----
T ss_pred             CeEEEEcCCCCcE---EeecCCC-CCCccceeEEcCCeEEEeCCCC--------eEEEEECCCCcEeEEEECCCCc----
Confidence            5799999999986   2332222 2222234455676554433332        4999999998864222222222    


Q ss_pred             ccccccceEEcCCCCE-EEEEEe
Q 039497          540 DRERINHVCFSADGEW-LLFTAN  561 (642)
Q Consensus       540 ~~~~~~~~~~S~Dg~~-l~~~~~  561 (642)
                         ....++|..||+. |++.+.
T Consensus       530 ---~~~P~ty~~~G~qYv~i~ag  549 (582)
T d1flga_         530 ---VSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             ---CSCCEEEEETTEEEEEEEEC
T ss_pred             ---cccCEEEEECCEEEEEEEeC
Confidence               2345788899964 555554

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=83.66  E-value=9  Score=31.34  Aligned_cols=137  Identities=18%  Similarity=0.255  Sum_probs=76.8

Q ss_pred             CccCcEECCCCCeEEEEeCCCCceeEEEEECCCCccc---cceeeCCCCCCcc-cceeEecCCCEEEEEecCCCCCCCCc
Q 039497          437 NNAFPSCSPDGKFLVFRSGRSGHKNLFVLDAVNGEFN---GDIRQLTDGPWID-TMPSWSPKGDLIAFSSNRHNPDNVEA  512 (642)
Q Consensus       437 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---~~~~~l~~~~~~~-~~~~~spdG~~l~~~~~~~~~~~~~~  512 (642)
                      ....+.|||+|+..++..   +  +||.=.+.+-..-   ...+.|-...+.. ..+.|+|.|-..+++ . +       
T Consensus        41 n~~~i~fsP~G~LyaVr~---~--~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt-~-~-------  106 (235)
T d1tl2a_          41 NFKFLFLSPGGELYGVLN---D--KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS-K-D-------  106 (235)
T ss_dssp             TCSEEEECTTSCEEEEET---T--EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE-T-T-------
T ss_pred             ceeEEEECCCCcEEEEEC---C--eEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec-C-c-------
Confidence            445689999998766554   2  7887766543320   1234444444433 335889999654444 2 2       


Q ss_pred             eeEEEEeCCCCce-------EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEE
Q 039497          513 FSLYVIKPDGSGL-------RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVV  585 (642)
Q Consensus       513 ~~l~~~d~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  585 (642)
                       .||+-..-+.+.       ..|-..+..        .+..+.|.|+|..-++ .++                  +|+..
T Consensus       107 -~LYr~~pPtn~~q~W~g~a~~vG~~gw~--------df~~lFFdP~G~LYaV-~~~------------------~l~k~  158 (235)
T d1tl2a_         107 -KLYKASPPQSDTDNWIARATEVGSGGWS--------GFKFLFFHPNGYLYAV-HGQ------------------QFYKA  158 (235)
T ss_dssp             -EEEEESCCCSTTCCHHHHSEEEECSSGG--------GEEEEEECTTSCEEEE-ETT------------------EEEEE
T ss_pred             -ceecCCcCcccchhhhhhhhhhccCCcC--------ceeEEEECCCceEEEE-ECC------------------cEEEc
Confidence             288876655432       233332222        4567889999974444 322                  56666


Q ss_pred             EcCCCc-------eeeccCCCCC-CCCcEEecCCceEE
Q 039497          586 KLDGSG-------LRRLTWNGYE-NGTPAWHPGNQLDL  615 (642)
Q Consensus       586 ~~~~~~-------~~~lt~~~~~-~~~~~~s~dg~~~~  615 (642)
                      ....+.       -+.|-...+. ...+.|+|||.++.
T Consensus       159 ~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~  196 (235)
T d1tl2a_         159 LPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFG  196 (235)
T ss_dssp             CCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEE
T ss_pred             CCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEE
Confidence            433221       2223322222 24679999997663

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.18  E-value=5.4  Score=38.30  Aligned_cols=125  Identities=8%  Similarity=0.105  Sum_probs=62.0

Q ss_pred             CcccceeEecCCCEEEEEec-CCCCCCCCceeEEEEeCCCCceEEeeecCCCCCCCcccccccceEEcCC---CCEEEEE
Q 039497          484 WIDTMPSWSPKGDLIAFSSN-RHNPDNVEAFSLYVIKPDGSGLRRIHVAGPEGSGDVDRERINHVCFSAD---GEWLLFT  559 (642)
Q Consensus       484 ~~~~~~~~spdG~~l~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~S~D---g~~l~~~  559 (642)
                      .....++|.|||+.| ++.. .+        .|++++.+++..+.+..................++|.||   ..+||++
T Consensus        27 ~~P~~la~~pdg~ll-Vter~~G--------~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs   97 (450)
T d1crua_          27 NKPHALLWGPDNQIW-LTERATG--------KILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (450)
T ss_dssp             SSEEEEEECTTSCEE-EEETTTC--------EEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCceEEEEeCCCeEE-EEEecCC--------EEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence            345678999999854 4443 23        399999888887776642111000000012346788875   4566665


Q ss_pred             EecCCcccCCCCCCCCCCCCCcEEEEEcCCCce---------eeccCCC-CCCCCcEEecCCceEEeecCCC
Q 039497          560 ANLGAVMAEPVSWPNQFQPYGDLYVVKLDGSGL---------RRLTWNG-YENGTPAWHPGNQLDLGKLRLE  621 (642)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~lt~~~-~~~~~~~~s~dg~~~~~~~~~~  621 (642)
                      .......    ...........|.++..+....         ..+.... -....+.|.|||.++++..+.+
T Consensus        98 yt~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~  165 (450)
T d1crua_          98 GTFKNPK----STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG  165 (450)
T ss_dssp             EEEECTT----C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred             EecCCCC----CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCC
Confidence            4321100    0000000011344444333221         1111211 1234789999999988876544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=81.19  E-value=20  Score=32.68  Aligned_cols=108  Identities=17%  Similarity=0.238  Sum_probs=58.1

Q ss_pred             CeEEEEeCCC-Ccee--EEEEECCCCccccceeeCCCCC-------CcccceeE--ecC-CCEEEEEecCCCCCCCCcee
Q 039497          448 KFLVFRSGRS-GHKN--LFVLDAVNGEFNGDIRQLTDGP-------WIDTMPSW--SPK-GDLIAFSSNRHNPDNVEAFS  514 (642)
Q Consensus       448 ~~l~~~~~~~-g~~~--l~~~d~~~g~~~~~~~~l~~~~-------~~~~~~~~--spd-G~~l~~~~~~~~~~~~~~~~  514 (642)
                      .-|+++++|+ +...  +|.++...+.    +..+....       ..+..+++  +|. |...+|.....     +...
T Consensus        86 ~di~vasnR~~~~~~l~~~~id~~~~~----l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~-----G~v~  156 (353)
T d1h6la_          86 VDIAAASNRSEGKNTIEIYAIDGKNGT----LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKE-----GEFE  156 (353)
T ss_dssp             EEEEEEEECCTTTCEEEEEEEETTTTE----EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSS-----SEEE
T ss_pred             eEEEEEeCCcCcceeEEEEEecCcccc----cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCC-----ceEE
Confidence            3477888775 3334  4555544444    34444321       12344454  554 66666776654     3444


Q ss_pred             EEEEeCC-CCce--EEeeecCCCCCCCcccccccceEEcCCCCEEEEEEecCCcccCCCCCCCCCCCCCcEEEEEcC
Q 039497          515 LYVIKPD-GSGL--RRIHVAGPEGSGDVDRERINHVCFSADGEWLLFTANLGAVMAEPVSWPNQFQPYGDLYVVKLD  588 (642)
Q Consensus       515 l~~~d~~-~~~~--~~l~~~~~~~~~~~~~~~~~~~~~S~Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  588 (642)
                      .|.+... .+..  +.+.......       .+..+++....++|++.....                 .||.++.+
T Consensus       157 q~~l~~~~~g~v~~~lvr~f~~~~-------q~EGCVvDde~~~LyisEE~~-----------------Giw~~~a~  209 (353)
T d1h6la_         157 QYELNADKNGYISGKKVRAFKMNS-------QTEGMAADDEYGSLYIAEEDE-----------------AIWKFSAE  209 (353)
T ss_dssp             EEEEEECTTSSEEEEEEEEEECSS-------CEEEEEEETTTTEEEEEETTT-----------------EEEEEESS
T ss_pred             EEEEEcCCCCceeeEeeeccCCCC-------ccceEEEeCCCCcEEEecCcc-----------------ceEEEEec
Confidence            4444333 3322  2222222222       456789999989888775432                 78988765