Citrus Sinensis ID: 039624

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
MAEPVQQQDILPWLKTLPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPPKKTAITFLNRSLAQRAAATGGATSSSGPTFTTRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAIAMHSSIPVAVSAKPRSSRLKDKNKDEGETLVKELFVQDVAQNNELLHVLGQGSPIVLLPQSSSGALGANPWIPLGLCSYREAIKSSG
cccccccccccccccccccccEEcccHHHHccHHHHHHHHHHHHHHcccEEEccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHccccEEccccccccccccccccccEEEccHHHHHHHHHHHHHHccccccccHHHHHHHccccccccHHHHHHccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccccccccc
ccccccccccccHcccccccccccccHHHHHcHHHHHHHHHHHHHHccEEEEcccccccccccEEcHcccccccEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccHHccccccccccccccccHHHHccccccccEccEEEEEEHHHHHHHHHccccHEEEEHHccccccEEEcccHHHHHHHHHHHHHHcccccccccccHHHHHHHEccccHHHHHHccccEEEEEccccEEEEEcccHHHccccccccHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccEEEEEcccccccccccccc
maepvqqqdilpwlktlpvapefhptlaefqdpIAYIFKIEKEASqygickivppvppppkktAITFLNRSLAQRAaatggatsssgptfttrqqqigfcprkprpvqkpvwqsgeyytFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWkasvdkpfsveyandmpgsafvpVRKIREavgegvtvgetpwnmrgvsrAKGSLLRFMkeeipgvtspMVYIAMLFSWFAWhaedhdlhslnylhmgasktwygvpMEAANAFEEVVRVhgygeeinplvtfatlgekttmispevfvgagvpccrlvqnagefvvtfprayhmgfshgfncgeaaniatpewLNIAKDAAIRRasinyppmvsHFQLLYDLAIAMHSsipvavsakprssrlkdknkdEGETLVKELFVQDVAQNNELLHvlgqgspivllpqsssgalganpwiplglCSYREAIKSSG
maepvqqqdilpwlkTLPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPPKKTAITFLNRSLAQRAAAtggatsssgptfttrqqqigfcprkprpvQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFVPVRKIREAVGegvtvgetpwnmrgvsRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAIAMHSSIPvavsakprssrlkdknkDEGETLVKELFVQDVAQNNELLHVLGQGSPIVLLPQSSSGALGANPWIPLGLCSYREAIKSSG
MAEPVQQQDILPWLKTLPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIvppvppppKKTAITFLNRSLAQRaaatggatsssgptfttRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAIAMHSSIPVAVSAKPRSSRLKDKNKDEGETLVKELFVQDVAQNNELLHVLGQGSPIVLLPQSSSGALGANPWIPLGLCSYREAIKSSG
********DILPWLKTLPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPV*******AITFL*****************************GFC******VQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAIAMHSSIPVA********************LVKELFVQDVAQNNELLHVLGQGSPIVLLPQSSSGALGANPWIPLGLCSYRE******
****************LPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKI**PVPPPPKKTAITFLNRSLAQRAAATGGATSSSGPTFTTRQQQIGFCPRKPRPVQKPVWQSGEYY**QEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFV*************TVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAIAMHSSIPVAVSAKPRSSR*******************************GQGSPIV*******************************
MAEPVQQQDILPWLKTLPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPPKKTAITFLNRSLA*****************TTRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAIAMHSSIPVA***************DEGETLVKELFVQDVAQNNELLHVLGQGSPIVLLPQSSSGALGANPWIPLGLCSYREAIKSSG
**********LPWLKTLPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPPKKTAITFLNRSLAQRAAATGGATSSSGPTFTTRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFV************VTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAIAMHSSIPVAVSAKPRSSRLKDKNKDEGETLVKELFVQDVAQNNELLHVLGQGSPIVLLPQSSSGALGANPWIPLGLCS*********
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MAEPVQQQDILPWLKTLPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPPKKTAITFLNRSLAQRAAATGGATSSSGPTFTTRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAIAMHSSIPVAVSAKPRSSRLKDKNKDEGETLVKELFVQDVAQNNELLHVLGQGSPIVLLPQSSSGALGANPWIPLGLCSYREAIKSSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query466 2.2.26 [Sep-21-2011]
Q9STM3 1360 Lysine-specific demethyla yes no 0.946 0.324 0.747 0.0
Q6BDA0 1340 Probable lysine-specific no no 0.532 0.185 0.58 6e-88
Q8GUI6 954 Probable lysine-specific no no 0.733 0.358 0.341 9e-52
Q9US53715 Jumonji/ARID domain-conta yes no 0.566 0.369 0.340 1e-39
Q3UXZ9 1690 Lysine-specific demethyla yes no 0.549 0.151 0.355 1e-38
P29375 1690 Lysine-specific demethyla yes no 0.549 0.151 0.355 1e-38
Q9VMJ7 1838 Lysine-specific demethyla yes no 0.551 0.139 0.318 1e-37
Q5XUN4 1535 Lysine-specific demethyla no no 0.637 0.193 0.320 3e-37
Q9BY66 1539 Lysine-specific demethyla no no 0.639 0.193 0.312 4e-37
Q62240 1548 Lysine-specific demethyla no no 0.639 0.192 0.312 1e-36
>sp|Q9STM3|REF6_ARATH Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1 Back     alignment and function desciption
 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/452 (74%), Positives = 383/452 (84%), Gaps = 11/452 (2%)

Query: 1   MAEPVQQQDILPWLKTLPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPP 60
           MA   Q QD+ PWLK+LPVAPEF PTLAEFQDPIAYI KIE+EAS+YGICKI+PP+PPP 
Sbjct: 1   MAVSEQSQDVFPWLKSLPVAPEFRPTLAEFQDPIAYILKIEEEASRYGICKILPPLPPPS 60

Query: 61  KKTAITFLNRSLAQ------RAAATGGATSSSGPTFTTRQQQIGFCPRKPRPVQKPVWQS 114
           KKT+I+ LNRSLA       R    G      GPTF TRQQQIGFCPRK RPVQ+PVWQS
Sbjct: 61  KKTSISNLNRSLAARAAARVRDGGFGACDYDGGPTFATRQQQIGFCPRKQRPVQRPVWQS 120

Query: 115 GEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGS 174
           GE Y+F EFE KAKNFEK+YLKKCG KK+ LSALEIE+LYW+A+VDKPFSVEYANDMPGS
Sbjct: 121 GEEYSFGEFEFKAKNFEKNYLKKCG-KKSQLSALEIETLYWRATVDKPFSVEYANDMPGS 179

Query: 175 AFVPVR----KIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAML 230
           AF+P+     + RE+ GEG TVGET WNMR +SRA+GSLL+FMKEEIPGVTSPMVY+AM+
Sbjct: 180 AFIPLSLAAARRRESGGEGGTVGETAWNMRAMSRAEGSLLKFMKEEIPGVTSPMVYVAMM 239

Query: 231 FSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATL 290
           FSWFAWH EDHDLHSLNYLHMGA KTWYGVP +AA AFEEVVRVHGYGEE+NPLVTF+TL
Sbjct: 240 FSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPKDAALAFEEVVRVHGYGEELNPLVTFSTL 299

Query: 291 GEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLN 350
           GEKTT++SPEVFV AG+PCCRLVQN GEFVVTFP AYH GFSHGFN GEA+NIATPEWL 
Sbjct: 300 GEKTTVMSPEVFVKAGIPCCRLVQNPGEFVVTFPGAYHSGFSHGFNFGEASNIATPEWLR 359

Query: 351 IAKDAAIRRASINYPPMVSHFQLLYDLAIAMHSSIPVAVSAKPRSSRLKDKNKDEGETLV 410
           +AKDAAIRRA+INYPPMVSH QLLYD  +A+ S +P +++ KPRSSRLKDK + EGE L 
Sbjct: 360 MAKDAAIRRAAINYPPMVSHLQLLYDFVLALGSRVPTSINPKPRSSRLKDKARSEGERLT 419

Query: 411 KELFVQDVAQNNELLHVLGQGSPIVLLPQSSS 442
           K+LFVQ++  NNELL  LG+GSP+ LLPQSSS
Sbjct: 420 KKLFVQNIIHNNELLSSLGKGSPVALLPQSSS 451
Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3. Demethylates both tri- (H3K27me3) and di-methylated (H3K27me2) H3K27me. Demethylates also H3K4me3/2 and H3K36me3/2 in an in vitro assay. Involved in the transcriptional regulation of hundreds of genes regulating developmental patterning and responses to various stimuli. Involved in the regulation of flowering time by repressing FLOWERING LOCUS C (FLC) expression.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q6BDA0|ELF6_ARATH Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana GN=ELF6 PE=1 SV=1 Back     alignment and function description
>sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1 Back     alignment and function description
>sp|Q9US53|JMJ2_SCHPO Jumonji/ARID domain-containing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=jmj2 PE=4 SV=1 Back     alignment and function description
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 Back     alignment and function description
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 Back     alignment and function description
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid PE=1 SV=1 Back     alignment and function description
>sp|Q5XUN4|KDM5D_PANTR Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2 SV=1 Back     alignment and function description
>sp|Q9BY66|KDM5D_HUMAN Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2 Back     alignment and function description
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query466
225456789 1295 PREDICTED: lysine-specific demethylase R 0.967 0.348 0.774 0.0
255540401 1736 nucleic acid binding protein, putative [ 0.922 0.247 0.794 0.0
449487815 1576 PREDICTED: LOW QUALITY PROTEIN: lysine-s 0.980 0.289 0.747 0.0
449469757 1576 PREDICTED: lysine-specific demethylase R 0.980 0.289 0.747 0.0
297816040 1378 hypothetical protein ARALYDRAFT_906087 [ 0.946 0.320 0.761 0.0
79586698 1360 relative of early flowering 6 protein [A 0.946 0.324 0.747 0.0
297816038 1357 hypothetical protein ARALYDRAFT_485204 [ 0.946 0.324 0.75 0.0
356518923 1565 PREDICTED: lysine-specific demethylase R 0.899 0.267 0.760 0.0
356507319 1567 PREDICTED: lysine-specific demethylase R 0.899 0.267 0.755 0.0
356518921 1586 PREDICTED: lysine-specific demethylase R 0.896 0.263 0.760 0.0
>gi|225456789|ref|XP_002275305.1| PREDICTED: lysine-specific demethylase REF6-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/470 (77%), Positives = 406/470 (86%), Gaps = 19/470 (4%)

Query: 9   DILPWLKTLPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPPKKTAITFL 68
           ++  WLKTLP+APE+HPTLAEFQDPI+YIFKIEKEAS+YGICKIVPPVPPPPKKTAI  L
Sbjct: 13  EVFSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASRYGICKIVPPVPPPPKKTAIANL 72

Query: 69  NRSLAQRAAATGGATSSSGPTFTTRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAK 128
            RSLA RAA++      S PTFTTRQQQ+GFCPRKPRPV+KPVWQSGEYYTFQEFE KA+
Sbjct: 73  TRSLANRAASS---NPKSAPTFTTRQQQVGFCPRKPRPVKKPVWQSGEYYTFQEFEAKAR 129

Query: 129 NFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFVPV--RKIREAV 186
            FEK+YLKK  + K  LSALEIE+L+WKASVDKPFSVEYANDMPGSAFVPV  +K REA 
Sbjct: 130 AFEKNYLKK--SSKKPLSALEIETLFWKASVDKPFSVEYANDMPGSAFVPVSSKKWREA- 186

Query: 187 GEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSL 246
           GE VTVGET WNMRG+SRAKGSLLRFMKEEIPGVTSPMVY+AM+FSWFAWH EDHDLHSL
Sbjct: 187 GEAVTVGETAWNMRGISRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSL 246

Query: 247 NYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAG 306
           NYLHMGA KTWYGVP EAA AFEEVVRVHGYG EINPLVTFA LGEKTT++SPEVFV AG
Sbjct: 247 NYLHMGAGKTWYGVPREAAVAFEEVVRVHGYGGEINPLVTFAVLGEKTTVMSPEVFVSAG 306

Query: 307 VPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPP 366
           +PCCRLVQN GEFVVTFPRAYH GFSHGFNCGEAANIATPEWL +AKDAAIRRASINYPP
Sbjct: 307 IPCCRLVQNPGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPP 366

Query: 367 MVSHFQLLYDLAIAMHSSIPVAVSAKPRSSRLKDKNKDEGETLVKELFVQDVAQNNELLH 426
           MVSHFQLLYDLA+A+ S IP+++S +PRSSRLKDK + EGET+VKELFVQ++ QNN+LLH
Sbjct: 367 MVSHFQLLYDLALALCSRIPMSISVEPRSSRLKDKKRGEGETVVKELFVQNIMQNNDLLH 426

Query: 427 VLGQGSPIVLLPQSSS-----------GALGANPWIPLGLCSYREAIKSS 465
           +LG+GS IVLLP+ SS            +    P + LGLC+  EA+K+S
Sbjct: 427 ILGKGSSIVLLPKRSSDISVCPNLRVGSSSRVKPRLSLGLCNLEEAMKTS 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540401|ref|XP_002511265.1| nucleic acid binding protein, putative [Ricinus communis] gi|223550380|gb|EEF51867.1| nucleic acid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449487815|ref|XP_004157814.1| PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase REF6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449469757|ref|XP_004152585.1| PREDICTED: lysine-specific demethylase REF6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297816040|ref|XP_002875903.1| hypothetical protein ARALYDRAFT_906087 [Arabidopsis lyrata subsp. lyrata] gi|297321741|gb|EFH52162.1| hypothetical protein ARALYDRAFT_906087 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79586698|ref|NP_680116.2| relative of early flowering 6 protein [Arabidopsis thaliana] gi|75337637|sp|Q9STM3.1|REF6_ARATH RecName: Full=Lysine-specific demethylase REF6; AltName: Full=Jumonji domain-containing protein 12; AltName: Full=Lysine-specific histone demethylase REF6; AltName: Full=Protein RELATIVE OF EARLY FLOWERING 6 gi|4678345|emb|CAB41155.1| putative zinc finger protein [Arabidopsis thaliana] gi|50513173|gb|AAT77779.1| relative of early flowering 6 [Arabidopsis thaliana] gi|332644895|gb|AEE78416.1| relative of early flowering 6 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297816038|ref|XP_002875902.1| hypothetical protein ARALYDRAFT_485204 [Arabidopsis lyrata subsp. lyrata] gi|297321740|gb|EFH52161.1| hypothetical protein ARALYDRAFT_485204 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356518923|ref|XP_003528125.1| PREDICTED: lysine-specific demethylase REF6-like [Glycine max] Back     alignment and taxonomy information
>gi|356507319|ref|XP_003522415.1| PREDICTED: lysine-specific demethylase REF6-like [Glycine max] Back     alignment and taxonomy information
>gi|356518921|ref|XP_003528124.1| PREDICTED: lysine-specific demethylase REF6-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query466
TAIR|locus:504955644 1360 REF6 "relative of early flower 0.946 0.324 0.723 4.6e-176
TAIR|locus:2146653 1340 ELF6 "EARLY FLOWERING 6" [Arab 0.555 0.193 0.571 2.4e-110
TAIR|locus:2044697 806 MEE27 "maternal effect embryo 0.669 0.387 0.345 1.9e-49
DICTYBASE|DDB_G0268778 1198 rbbB "putative Retinoblastoma 0.596 0.232 0.351 7.3e-48
TAIR|locus:2128659 954 JMJ14 "JUMONJI 14" [Arabidopsi 0.669 0.327 0.342 8.7e-48
TAIR|locus:2196979 819 JMJ18 "Jumonji domain-containi 0.572 0.326 0.384 3.4e-47
POMBASE|SPAC1002.05c715 jmj2 "histone demethylase Jmj2 0.566 0.369 0.350 5.1e-47
UNIPROTKB|G4N2P7 1755 MGG_04878 "Lid2 complex compon 0.637 0.169 0.333 1.5e-46
ASPGD|ASPL0000010243 1717 AN8211 [Emericella nidulans (t 0.620 0.168 0.353 4.6e-46
TAIR|locus:2025635 1209 PKDM7D [Arabidopsis thaliana ( 0.542 0.209 0.400 1.2e-44
TAIR|locus:504955644 REF6 "relative of early flowering 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1710 (607.0 bits), Expect = 4.6e-176, P = 4.6e-176
 Identities = 327/452 (72%), Positives = 370/452 (81%)

Query:     1 MAEPVQQQDILPWLKTLPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIXXXXXXXX 60
             MA   Q QD+ PWLK+LPVAPEF PTLAEFQDPIAYI KIE+EAS+YGICKI        
Sbjct:     1 MAVSEQSQDVFPWLKSLPVAPEFRPTLAEFQDPIAYILKIEEEASRYGICKILPPLPPPS 60

Query:    61 KKTAITFLNRSLAQRXXXXXXXXXXXXX------XXXXRQQQIGFCPRKPRPVQKPVWQS 114
             KKT+I+ LNRSLA R                       RQQQIGFCPRK RPVQ+PVWQS
Sbjct:    61 KKTSISNLNRSLAARAAARVRDGGFGACDYDGGPTFATRQQQIGFCPRKQRPVQRPVWQS 120

Query:   115 GEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGS 174
             GE Y+F EFE KAKNFEK+YLKKCG KK+ LSALEIE+LYW+A+VDKPFSVEYANDMPGS
Sbjct:   121 GEEYSFGEFEFKAKNFEKNYLKKCG-KKSQLSALEIETLYWRATVDKPFSVEYANDMPGS 179

Query:   175 AFVPVR----KIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAML 230
             AF+P+     + RE+ GEG TVGET WNMR +SRA+GSLL+FMKEEIPGVTSPMVY+AM+
Sbjct:   180 AFIPLSLAAARRRESGGEGGTVGETAWNMRAMSRAEGSLLKFMKEEIPGVTSPMVYVAMM 239

Query:   231 FSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATL 290
             FSWFAWH EDHDLHSLNYLHMGA KTWYGVP +AA AFEEVVRVHGYGEE+NPLVTF+TL
Sbjct:   240 FSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPKDAALAFEEVVRVHGYGEELNPLVTFSTL 299

Query:   291 GEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLN 350
             GEKTT++SPEVFV AG+PCCRLVQN GEFVVTFP AYH GFSHGFN GEA+NIATPEWL 
Sbjct:   300 GEKTTVMSPEVFVKAGIPCCRLVQNPGEFVVTFPGAYHSGFSHGFNFGEASNIATPEWLR 359

Query:   351 IAKDAAIRRASINYPPMVSHFQLLYDLAIAMHSSIPVAVSAKPRSSRLKDKNKDEGETLV 410
             +AKDAAIRRA+INYPPMVSH QLLYD  +A+ S +P +++ KPRSSRLKDK + EGE L 
Sbjct:   360 MAKDAAIRRAAINYPPMVSHLQLLYDFVLALGSRVPTSINPKPRSSRLKDKARSEGERLT 419

Query:   411 KELFVQDVAQNNELLHVLGQGSPIVLLPQSSS 442
             K+LFVQ++  NNELL  LG+GSP+ LLPQSSS
Sbjct:   420 KKLFVQNIIHNNELLSSLGKGSPVALLPQSSS 451
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
GO:0035067 "negative regulation of histone acetylation" evidence=IMP
GO:0009741 "response to brassinosteroid stimulus" evidence=IMP
GO:0009826 "unidimensional cell growth" evidence=IMP
GO:0033169 "histone H3-K9 demethylation" evidence=IMP
GO:0048366 "leaf development" evidence=IMP
TAIR|locus:2146653 ELF6 "EARLY FLOWERING 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044697 MEE27 "maternal effect embryo arrest 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268778 rbbB "putative Retinoblastoma (Rb) binding protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2128659 JMJ14 "JUMONJI 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196979 JMJ18 "Jumonji domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC1002.05c jmj2 "histone demethylase Jmj2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|G4N2P7 MGG_04878 "Lid2 complex component lid2" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000010243 AN8211 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2025635 PKDM7D [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9STM3REF6_ARATH1, ., 1, 4, ., 1, 1, ., -0.74770.94630.3242yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015901001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (1284 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 5e-43
smart0054542 smart00545, JmjN, Small domain found in the jumonj 6e-14
pfam0237534 pfam02375, JmjN, jmjN domain 1e-13
smart0055858 smart00558, JmjC, A domain family that is part of 1e-09
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information 
 Score =  147 bits (373), Expect = 5e-43
 Identities = 52/120 (43%), Positives = 64/120 (53%), Gaps = 6/120 (5%)

Query: 224 MVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINP 283
            +Y+ M  S   WH ED  L+S+NYLH G  K WY +P E A  FE+V+  H  GE    
Sbjct: 1   WLYMGMPGSTTPWHIEDQGLYSINYLHFGGPKVWYIIPSEYAEKFEKVLSKHNGGE---- 56

Query: 284 LVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANI 343
                 L    T+ISP+  +  G+P  R VQ  GEFV TFP  YH  F+ GFN  EA N 
Sbjct: 57  --QPDLLLHLNTIISPKQLLENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114
>gnl|CDD|128818 smart00545, JmjN, Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>gnl|CDD|190295 pfam02375, JmjN, jmjN domain Back     alignment and domain information
>gnl|CDD|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 466
KOG0958 690 consensus DNA damage-responsive repressor GIS1/RPH 100.0
KOG1246 904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 100.0
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 100.0
smart0054542 JmjN Small domain found in the jumonji family of t 99.79
PF0237534 JmjN: jmjN domain; InterPro: IPR003349 Jumonji pro 99.66
smart0055857 JmjC A domain family that is part of the cupin met 99.41
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 97.96
KOG2131427 consensus Uncharacterized conserved protein, conta 96.55
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 95.99
KOG2130407 consensus Phosphatidylserine-specific receptor Ptd 93.05
KOG1356889 consensus Putative transcription factor 5qNCA, con 91.58
PF08007319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 84.25
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-79  Score=646.18  Aligned_cols=294  Identities=36%  Similarity=0.620  Sum_probs=243.1

Q ss_pred             cCCCCCCceecCChhhcCChHHHHHHHHh-hhcccCeeeecCCCCCCCcchhhHHHHHH-HHHHhhhcCCCCCCCCCccc
Q 039624           14 LKTLPVAPEFHPTLAEFQDPIAYIFKIEK-EASQYGICKIVPPVPPPPKKTAITFLNRS-LAQRAAATGGATSSSGPTFT   91 (466)
Q Consensus        14 l~~~p~~pvf~PT~eEF~dp~~yi~~i~~-~a~~~GI~KIvPP~~w~p~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~F~   91 (466)
                      +.....+||||||+|||+||.+||++|++ +|+++||+|||||++|+|+.. ++++++. +.++..+++.  +. +..|+
T Consensus         9 i~ps~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~-~~di~di~I~~PiqQ~v~--g~-~G~F~   84 (690)
T KOG0958|consen    9 INPSDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLM-YDDIDDIKIPAPIQQVVT--GQ-GGLFT   84 (690)
T ss_pred             cCCCCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccc-cCchhheecChhHHHHhh--cc-CceEE
Confidence            44477899999999999999999999998 566799999999999999875 3344332 1111111110  11 11221


Q ss_pred             ceeccccccCCCCCCCCCcccccCCcccHHHHHHHHHHHHHHHHHhcCCCCC-CCChHHHHHHhhhhcC-CCCcceeecC
Q 039624           92 TRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKA-ALSALEIESLYWKASV-DKPFSVEYAN  169 (466)
Q Consensus        92 tR~Q~l~~~~~~~~~~~~~~~~sg~~ytl~~F~~~a~~f~~~~~~~~~~~~~-~~~~~~vE~~fW~~~~-~~~v~V~Yga  169 (466)
                        ||++               |..+.||++||+++|..  ..    +. +++ +...+|+|++|||++. ..|   .|||
T Consensus        85 --~~Ni---------------~~~kam~v~q~r~lAns--~~----y~-tpr~~~d~~dle~kYWKnltf~~P---iYGa  137 (690)
T KOG0958|consen   85 --QYNI---------------QDKKAMTVRQFRDLANS--DK----YC-TPRGSQDFEDLEQKYWKNLTFDSP---IYGA  137 (690)
T ss_pred             --Eeeh---------------hhccccChhhhhhhhhh--cc----cC-CCcccccHHHHHHHHHhcccCCCC---cccc
Confidence              1111               23568999999999975  21    22 234 7889999999999986 344   7999


Q ss_pred             CCCCCccCCCcccccccCCCcccCCCCccCCCCCCCCCCchh--hhcCCCCCCccceeeeecccCcccceeCCCCceeeE
Q 039624          170 DMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLR--FMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLN  247 (466)
Q Consensus       170 Dl~GS~F~~~~~~~~~~~~~~~~~~~~WNL~nlp~~~~SlL~--~l~~~i~Gv~~P~lYiGm~~S~f~WH~ED~~l~SIN  247 (466)
                      |+.||+|+..              ...||+++|+    .+|+  ..+..|.||||||||+|||+++|+||+||++|||||
T Consensus       138 D~~gSi~~~~--------------~~~WNi~~L~----tild~~~~~~~i~gvNt~yLyfGmwKttFaWHtEdmDLySIN  199 (690)
T KOG0958|consen  138 DINGSIYDED--------------LDEWNIARLD----TILDLEECGIIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSIN  199 (690)
T ss_pred             cCCCccCccc--------------cccccccccc----chhchhhcceeecccCccceeeeeeecccccccCCccceeee
Confidence            9999999864              6899999994    6665  667789999999999999999999999999999999


Q ss_pred             eeeeCCceeEEecChhhHHHHHHHHHHcCCCCCCCchhhhhhhcCCccccChhhHhcCCCCcceeeccCCcEEEEcCCcc
Q 039624          248 YLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAY  327 (466)
Q Consensus       248 Y~H~GapK~WY~VP~~~~~kfE~l~~~~~~~~~~~~~~~~~~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aY  327 (466)
                      |+|||+||+||+||+++.++||+++.+. +.++.  ..|.+|||||++++||.+|+++|||+++++|++||||||||++|
T Consensus       200 yLHFGaPK~WYaIP~eh~~rfekla~~~-fp~~~--~~C~aFLRHK~~LiSP~~LkqnGIpfn~ivqeagEFmITFPygy  276 (690)
T KOG0958|consen  200 YLHFGAPKQWYAIPPEHGDRFEKLASEL-FPDSS--QGCPAFLRHKMTLISPSVLKQNGIPFNRIVQEAGEFMITFPYGY  276 (690)
T ss_pred             eeecCCCcceeecCHHHHHHHHHHHHhh-CCccc--cCCHHHHhhcccccCHHHHHHcCCCcceeeecCCcEEEecCccc
Confidence            9999999999999999999999999986 33332  35889999999999999999999999999999999999999999


Q ss_pred             eeeeccccceehhhcccCchhHHHHHHHHHHH
Q 039624          328 HMGFSHGFNCGEAANIATPEWLNIAKDAAIRR  359 (466)
Q Consensus       328 H~gfn~Gfn~aEavNFA~~~Wl~~g~~a~~~~  359 (466)
                      |+|||+||||+|++|||+++|++||+.|..|.
T Consensus       277 HaGFN~GfN~aES~nFat~Rwi~YgK~a~~C~  308 (690)
T KOG0958|consen  277 HAGFNHGFNCAESTNFATPRWIDYGKQALLCS  308 (690)
T ss_pred             ccccccchhhhhhhcccchhhhhhcccccccc
Confidence            99999999999999999999999999998773

>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>smart00545 JmjN Small domain found in the jumonji family of transcription factors Back     alignment and domain information
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
2w2i_A358 Crystal Structure Of The Human 2-Oxoglutarate Oxyge 2e-34
3dxu_A337 The Crystal Structure Of Core Jmjd2d Complexed With 1e-33
3dxt_A354 Crystal Structure Of The Catalytic Core Domain Of J 2e-33
4hon_A330 Crystal Structure Of Human Jmjd2d/kdm4d In Complex 2e-33
4hoo_A330 Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L 2e-33
2xml_A348 Crystal Structure Of Human Jmjd2c Catalytic Domain 7e-31
2oq6_A381 Crystal Structure Of Jmjd2a Complexed With Histone 1e-30
2p5b_A352 The Complex Structure Of Jmjd2a And Trimethylated H 1e-30
2pxj_A347 The Complex Structure Of Jmjd2a And Monomethylated 2e-30
2wwj_A348 Structure Of Jmjd2a Complexed With Inhibitor 10a Le 2e-30
2gp3_A349 Crystal Structure Of The Catalytic Core Domain Of J 2e-30
3opt_A373 Crystal Structure Of The Rph1 Catalytic Core With A 3e-28
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/255 (35%), Positives = 124/255 (48%), Gaps = 38/255 (14%)
Query: 114 SGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSA-----LEIESLYWKASVDKPFSVEYA 168
           SG+   F ++  K K       ++  N K   +       ++E  YWK+    P    Y 
Sbjct: 99  SGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQRYWKSHPGNP--PIYG 156
Query: 169 NDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEE----IPGVTSPM 224
            D+ GS F    K               WN+  +    G++L  +++E    I GV +P 
Sbjct: 157 ADISGSLFEESTK--------------QWNLGHL----GTILDLLEQECGVVIEGVNTPY 198
Query: 225 VYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPL 284
           +Y  M  + FAWH ED DL+S+NYLH G  KTWY VP E     E + R      E+ P 
Sbjct: 199 LYFGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLAR------ELFPD 252
Query: 285 VTF---ATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAA 341
           ++    A L  K  +ISP V    G+P   + Q AGEF+VTFP  YH GF+HGFNC EA 
Sbjct: 253 ISRGCEAFLRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAI 312
Query: 342 NIATPEWLNIAKDAA 356
           N ATP W++  K A+
Sbjct: 313 NFATPRWIDYGKMAS 327
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337 Back     alignment and structure
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354 Back     alignment and structure
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330 Back     alignment and structure
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330 Back     alignment and structure
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348 Back     alignment and structure
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381 Back     alignment and structure
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352 Back     alignment and structure
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347 Back     alignment and structure
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348 Back     alignment and structure
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349 Back     alignment and structure
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query466
3opt_A373 DNA damage-responsive transcriptional repressor R; 1e-72
2ox0_A381 JMJC domain-containing histone demethylation PROT; 1e-71
3dxt_A354 JMJC domain-containing histone demethylation PROT; 2e-70
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 5e-62
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 2e-55
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 3e-55
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 Back     alignment and structure
 Score =  233 bits (593), Expect = 1e-72
 Identities = 93/386 (24%), Positives = 147/386 (38%), Gaps = 54/386 (13%)

Query: 17  LPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPPKKTAITFLNRSLAQRA 76
           +   P F PT  +F+D  AY   I K   + G+ K++PP     K         +L +  
Sbjct: 11  VGGVPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKLDLPYS-AETLQKIK 69

Query: 77  AATGGATSSSGPTFTTRQQQIGFCP--------------------RKPRPVQKPVWQSGE 116
             +      SG       Q +                        +  R  +K       
Sbjct: 70  IKSPIQQHISGNKGLFMVQNVEKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSVSKST 129

Query: 117 YYTFQEFETKA-----KNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDM 171
               + FE+       + F   Y     + +       +E  YWK          Y  D 
Sbjct: 130 KLKLKNFESSFNIDDFEQFRTEYTIDLSDFQNTERLKFLEEYYWKTLNFTT--PMYGADT 187

Query: 172 PGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLF 231
           PGS F                G   WN+  +     ++L  M+ ++PGV    +Y  +  
Sbjct: 188 PGSIF--------------PEGLNVWNVAKL----PNILDHMETKVPGVNDSYLYAGLWK 229

Query: 232 SWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLG 291
           + F+WH ED DL+S+NY+H GA K WY +P E    F + ++     E  N       L 
Sbjct: 230 ASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFKFYKFMQEQFPEEAKN---CPEFLR 286

Query: 292 EKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNI 351
            K  + SP++    G+ C  +V + GEF++T+P  YH GF++G+N  E+ N A  EWL I
Sbjct: 287 HKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAGFNYGYNLAESVNFALEEWLPI 346

Query: 352 AKDAAIR-----RASINYPPMVSHFQ 372
            K A           I+   +   ++
Sbjct: 347 GKKAGKCHCISDSVEIDVKKLAKSWR 372
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 Back     alignment and structure
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query466
3dxt_A354 JMJC domain-containing histone demethylation PROT; 100.0
2ox0_A381 JMJC domain-containing histone demethylation PROT; 100.0
3opt_A373 DNA damage-responsive transcriptional repressor R; 100.0
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 100.0
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 100.0
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 100.0
2ypd_A392 Probable JMJC domain-containing histone demethyla 97.82
3pua_A392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 97.69
3k3o_A371 PHF8, PHD finger protein 8; histone demethylase, c 97.67
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 97.66
3kv9_A397 JMJC domain-containing histone demethylation prote 97.62
3kv5_D488 JMJC domain-containing histone demethylation prote 97.56
2yu1_A451 JMJC domain-containing histone demethylation PROT; 97.43
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 97.21
4gjz_A235 Lysine-specific demethylase 8; JMJC, beta barrel, 97.13
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 97.0
3d8c_A349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 95.69
3al5_A338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 93.96
1vrb_A342 Putative asparaginyl hydroxylase; 2636534, structu 84.08
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* Back     alignment and structure
Probab=100.00  E-value=3.5e-88  Score=685.15  Aligned_cols=312  Identities=34%  Similarity=0.497  Sum_probs=263.8

Q ss_pred             CCCCCceecCChhhcCChHHHHHHHHh-hhcccCeeeecCCCCCCCcchhhHHHHHHHHHHhhhcCCCCCCCCCccccee
Q 039624           16 TLPVAPEFHPTLAEFQDPIAYIFKIEK-EASQYGICKIVPPVPPPPKKTAITFLNRSLAQRAAATGGATSSSGPTFTTRQ   94 (466)
Q Consensus        16 ~~p~~pvf~PT~eEF~dp~~yi~~i~~-~a~~~GI~KIvPP~~w~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~F~tR~   94 (466)
                      .-..+||||||+|||+||.+||++|++ +|+++||||||||++|.|+.. +++++                 ..++++++
T Consensus        14 ~~~~ipvF~PT~eEF~df~~Yi~~ie~~Ga~~~Gi~KIIPP~~W~~r~~-~~~~~-----------------~~~i~~pi   75 (354)
T 3dxt_A           14 PNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET-YDNIS-----------------EILIATPL   75 (354)
T ss_dssp             TTCCCEEECCCTTGGGCHHHHHHHHHHTTGGGGSEEEECCCTTCCSSSC-STTCT-----------------TCEESSCE
T ss_pred             CCCCcceecCCHHHHhCHHHHHHHHHhccccccCcccccCcccccCccc-ccchh-----------------cccccCCc
Confidence            345678999999999999999999997 578999999999999999863 44442                 24566777


Q ss_pred             ccccccCCCCCCCCCcccccCCcccHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHhhhhcCCCCcceeecCCCCCC
Q 039624           95 QQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGS  174 (466)
Q Consensus        95 Q~l~~~~~~~~~~~~~~~~sg~~ytl~~F~~~a~~f~~~~~~~~~~~~~~~~~~~vE~~fW~~~~~~~v~V~YgaDl~GS  174 (466)
                      ||+...   ..+...+.....+.||+++|+++|+..+      +. .+.+.+.++||++|||++...  .++||||+.||
T Consensus        76 ~q~~~g---~~G~~~~~~~~~k~~t~~~f~~~a~~~~------~~-~p~~~~~~~lE~~fW~~~~~~--~p~YgaD~~gS  143 (354)
T 3dxt_A           76 QQVASG---RAGVFTQYHKKKKAMTVGEYRHLANSKK------YQ-TPPHQNFEDLERKYWKNRIYN--SPIYGADISGS  143 (354)
T ss_dssp             EEEEEE---ETTEEEEEEEECCCEEHHHHHHHHTSTT------TS-CCCCSSHHHHHHHHHHHGGGC--CCEEEEEEECC
T ss_pred             eeeecC---CCceEEEeeeccCccCHHHHHHHHhhhh------cc-CCCCCCHHHHHHHHhhhcccC--CceeeecCCCc
Confidence            776421   1122222334568999999999998532      12 456788999999999987543  36899999999


Q ss_pred             ccCCCcccccccCCCcccCCCCccCCCCCCCCCCchhhhcCCCCCCccceeeeecccCcccceeCCCCceeeEeeeeCCc
Q 039624          175 AFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGAS  254 (466)
Q Consensus       175 ~F~~~~~~~~~~~~~~~~~~~~WNL~nlp~~~~SlL~~l~~~i~Gv~~P~lYiGm~~S~f~WH~ED~~l~SINY~H~Gap  254 (466)
                      +|+.+              .++|||+|||.+.++||++++.+|+|||+||||+||+||+||||+||++||||||+|+|+|
T Consensus       144 ~F~~~--------------~~~WNL~~L~~~~~~Ll~~~~~~I~GVntP~LYiGm~~Stf~WH~ED~~L~SINYlH~Gap  209 (354)
T 3dxt_A          144 LFDEN--------------TKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEP  209 (354)
T ss_dssp             CSCTT--------------CCSSCTTSSCCHHHHHHHHHCCCCCCCCCCEEEEECTTCEEEEECCGGGCEEEEEEEEESC
T ss_pred             ccCCC--------------cchhhhhhccchhHHHHhhcCCCCCCccceeeeeccccCCCcceecCCcceEEEEEecCCc
Confidence            99874              5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEecChhhHHHHHHHHHHcCCCCCCCchhhhhhhcCCccccChhhHhcCCCCcceeeccCCcEEEEcCCcceeeeccc
Q 039624          255 KTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHG  334 (466)
Q Consensus       255 K~WY~VP~~~~~kfE~l~~~~~~~~~~~~~~~~~~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~G  334 (466)
                      |+||+||++++++||++|++.... .  ...|.+||+|++++++|+.|+++||||++++|+|||||||||+|||+|||+|
T Consensus       210 K~WY~VP~~~~~kfE~l~k~~~p~-~--~~~c~~fL~h~~~lisP~~L~~~GIpv~~~vQ~pGEfViTfP~aYH~gfn~G  286 (354)
T 3dxt_A          210 KTWYVVPPEHGQRLERLARELFPG-S--SRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHG  286 (354)
T ss_dssp             EEEEEECGGGHHHHHHHHHHHSHH-H--HHHCTTGGGGCCEEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESS
T ss_pred             eEEEEeCHHHHHHHHHHHHHhCch-h--hhhcHHHHhcCcccCCHHHHHHCCCceEEEEeCCCcEEEECCCceEEEeecc
Confidence            999999999999999999986321 1  1246789999999999999999999999999999999999999999999999


Q ss_pred             cceehhhcccCchhHHHHHHHHHHHHhcCCCCccchHHHHH
Q 039624          335 FNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLY  375 (466)
Q Consensus       335 fn~aEavNFA~~~Wl~~g~~a~~~~~~~~~~~~~~~~~Ll~  375 (466)
                      |||+||||||+++|+++|+.|.+|..... ...|+|+.++-
T Consensus       287 fn~aEAvNFA~~~Wl~~g~~A~~C~C~~~-~v~i~~d~~~~  326 (354)
T 3dxt_A          287 FNCAEAINFATPRWIDYGKMASQCSCGEA-RVTFSMDAFVR  326 (354)
T ss_dssp             SEEEEEEEECCGGGHHHHHHCCCCCSSSC-CCCHHHHHHHH
T ss_pred             ccHhHhhccCcHHHHHhhhhcccccccCc-cceecHHHHHH
Confidence            99999999999999999999977754433 24478887764
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Back     alignment and structure
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Back     alignment and structure
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Back     alignment and structure
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query466
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 97.19
d1h2ka_335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 96.78
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=97.19  E-value=0.00055  Score=64.32  Aligned_cols=119  Identities=16%  Similarity=0.090  Sum_probs=80.1

Q ss_pred             cceeeeecccCcccceeCCCCceeeEeeeeCCceeEEecChhhHHHHHHHHHHcCCCC---CCCchhhhhhhcCCccccC
Q 039624          222 SPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGE---EINPLVTFATLGEKTTMIS  298 (466)
Q Consensus       222 ~P~lYiGm~~S~f~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~~~~---~~~~~~~~~~L~h~~~~is  298 (466)
                      ...+++|...+.+.+|...++  .++.+-.| .|.|+..|+.+...+        +..   ........+... ...   
T Consensus       123 ~~~~~~~~~g~~~~~H~D~~d--~f~~Qv~G-~K~W~L~~p~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~---  187 (319)
T d1vrba1         123 KAIVYAAKNGGGFKAHFDAYT--NLIFQIQG-EKTWKLAKNENVSNP--------MQHYDLSEAPYYPDDLQS-YWK---  187 (319)
T ss_dssp             EEEEEEECSSCCCCSEECSSE--EEEEEEES-CEEEEEECCSSCSSC--------SSCEECC----CCHHHHH-HCC---
T ss_pred             eeEEEecCCCCCCccccCCCc--eeEEeecc-eEEEEEeCCcccccc--------ccCcccccCccccccccc-cch---
Confidence            346888888999999998764  34445566 899999998763311        100   000000000000 000   


Q ss_pred             hhhHhcCCCCcceeeccCCcEEEEcCCcceeeeccccceehhhcccCchhHHHHHHH
Q 039624          299 PEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDA  355 (466)
Q Consensus       299 P~~L~~~GIpv~r~vQ~pGEfVvtfP~aYH~gfn~Gfn~aEavNFA~~~Wl~~g~~a  355 (466)
                      .......+.+.+.++++|||.++.=+|-+|.+.|.|-+++-++||..++|.++-..+
T Consensus       188 ~~~~~~~~~~~~~~~L~pGDvLYiP~gw~H~v~s~~~sis~sv~f~~~~~~d~~~~~  244 (319)
T d1vrba1         188 GDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLMLAA  244 (319)
T ss_dssp             SCCCCTTCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCCBHHHHHHHH
T ss_pred             hhchhhhcCccEEEEECCCCEEEeCCCceEEeEecCCeEEEEEEecCCCHHHHHHHH
Confidence            001123456788999999999999999999999999999999999999999975444
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure