Citrus Sinensis ID: 039874

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
CSSSSCYSENLVAAQKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLTN
ccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccEEEEEcccccccccEEEEEEccEEEEEEEcccccEEEEEcccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccEEEEccEEEEEcccccccHHHcccHHHHHHHcccHHHHHHHcccccccEEEEEEEEEEccccHHHHHHcccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEEEcccEEEEEcccEEEEEEEEEccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcc
ccccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccEEEEEEcccccccccEEEEEEcccEEEEEEcccccEEEEEEccccccHEEEcccccccEEEcccccEEEcccccEEEcccccccccccHHHccccEEEEEEEcEEEEEEcccccccHHHHccccHHHHHHccHHHHHHcccccccEEEEEEEEEEEccccEEEEEcccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHcccccEEEEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcc
csssscysENLVAAQKLVYefnpqipiekaltppsswytdpsflALELHRVFYRSwqvvgytdqlkdpqdffsgrigevEFVVcrddngkihaFHNVCRHHAsilatgsgkkswfvcpyhgwtygldgtllkATRITgikdfnvkefglvplevatwgpfvllnmgkeavhqeevdsnvvanewlggsseilsingidsslsYLCRREYTIECNWKVFCdnyldggyhvpyahkglasglqldsystslYEKVSIQrcesgstegtddthrlgsKAIYafiypnfminrygpwmdtnlviplaptrcKVVFDyfldgslkddKAFIEQSLKDSEQVQMEDIILCEgvqrglespaycsgryapsveqTMYHFHSLLHCNLTN
CSSSSCYSENLVAAQKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQrcesgstegtddthrlGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLkdseqvqmEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLTN
CSSSSCYSENLVAAQKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLTN
*******SENLVAAQKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQR*************RLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYFLDGSLKDDKAFIEQSL****QVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCN***
*****************VYEFNPQIPI*KALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQR*************RLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLTN
********ENLVAAQKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQ************THRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLTN
*******SENLVAAQKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTS*YEKVSIQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLTN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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CSSSSCYSENLVAAQKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query382 2.2.26 [Sep-21-2011]
Q9SZR0422 Choline monooxygenase, ch yes no 0.952 0.862 0.685 1e-153
Q93XE1442 Choline monooxygenase, ch N/A no 0.971 0.839 0.522 1e-119
O04121439 Choline monooxygenase, ch N/A no 0.942 0.820 0.535 1e-118
O22553446 Choline monooxygenase, ch N/A no 0.939 0.804 0.525 1e-117
Q9LKN0438 Choline monooxygenase, ch N/A no 0.929 0.810 0.523 1e-116
P0ABR7374 Putative dioxygenase subu N/A no 0.887 0.906 0.282 2e-30
P0ABR8374 Putative dioxygenase subu N/A no 0.887 0.906 0.282 2e-30
Q7N4W0453 3-phenylpropionate/cinnam yes no 0.523 0.441 0.292 1e-19
O85673471 Anthranilate 1,2-dioxygen yes no 0.507 0.411 0.293 9e-19
A8A344453 3-phenylpropionate/cinnam no no 0.484 0.408 0.304 2e-17
>sp|Q9SZR0|CHMO_ARATH Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2 Back     alignment and function desciption
 Score =  542 bits (1396), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 251/366 (68%), Positives = 307/366 (83%), Gaps = 2/366 (0%)

Query: 16  KLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGR 75
           KLV EF+P+IP+E+A TPPSSWYTDP F + EL RVFY  WQ VGY+DQ+K+ +DFF+GR
Sbjct: 56  KLVTEFDPKIPLERASTPPSSWYTDPQFYSFELDRVFYGGWQAVGYSDQIKESRDFFTGR 115

Query: 76  IGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATR 135
           +G+V+FVVCRD+NGKIHAFHNVC HHASILA+G+G+KS FVC YHGWTY L G+L+KATR
Sbjct: 116 LGDVDFVVCRDENGKIHAFHNVCSHHASILASGNGRKSCFVCLYHGWTYSLSGSLVKATR 175

Query: 136 ITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSN-VVANEWLGGSSEILSI 194
           ++GI++F++ E GL PL VA WGPFVLL +      + EV+++ +VA+EWLG S   LS 
Sbjct: 176 MSGIQNFSLSEMGLKPLRVAVWGPFVLLKVTAATSRKGEVETDELVASEWLGTSVGRLSQ 235

Query: 195 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVS 254
            G+DS LSY+CRREYTI+CNWKVFCDNYLDGGYHVPYAHKGL SGL L++YST+++EKVS
Sbjct: 236 GGVDSPLSYICRREYTIDCNWKVFCDNYLDGGYHVPYAHKGLMSGLDLETYSTTIFEKVS 295

Query: 255 IQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYF 314
           IQ C  GS  G D   RLGS+A+YAF+YPNFMINRYGPWMDTNLV+PL P +CKVVFDYF
Sbjct: 296 IQECGGGSKVGEDGFDRLGSEALYAFVYPNFMINRYGPWMDTNLVLPLGPRKCKVVFDYF 355

Query: 315 LDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHS 374
           LD SLKDD+AFI++SL++S++VQMED++LCE VQRGLES AY  GRYA  VE+ M+HFH 
Sbjct: 356 LDPSLKDDEAFIKRSLEESDRVQMEDVMLCESVQRGLESQAYDKGRYA-LVEKPMHHFHC 414

Query: 375 LLHCNL 380
           LLH NL
Sbjct: 415 LLHHNL 420
Catalyzes the first step of the osmoprotectant glycine betaine synthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 5EC: .EC: 7
>sp|Q93XE1|CHMO_AMATR Choline monooxygenase, chloroplastic OS=Amaranthus tricolor GN=CMO PE=2 SV=1 Back     alignment and function description
>sp|O04121|CHMO_SPIOL Choline monooxygenase, chloroplastic OS=Spinacia oleracea GN=CMO PE=1 SV=1 Back     alignment and function description
>sp|O22553|CHMO_BETVU Choline monooxygenase, chloroplastic OS=Beta vulgaris GN=CMO PE=2 SV=1 Back     alignment and function description
>sp|Q9LKN0|CHMO_ATRHO Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO PE=2 SV=1 Back     alignment and function description
>sp|P0ABR7|YEAW_ECOLI Putative dioxygenase subunit alpha YeaW OS=Escherichia coli (strain K12) GN=yeaW PE=3 SV=1 Back     alignment and function description
>sp|P0ABR8|YEAW_ECO57 Putative dioxygenase subunit alpha YeaW OS=Escherichia coli O157:H7 GN=yeaW PE=3 SV=1 Back     alignment and function description
>sp|Q7N4W0|HCAE_PHOLL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=hcaE PE=3 SV=1 Back     alignment and function description
>sp|O85673|ANTDA_ACIAD Anthranilate 1,2-dioxygenase large subunit OS=Acinetobacter sp. (strain ADP1) GN=antA PE=1 SV=1 Back     alignment and function description
>sp|A8A344|HCAE_ECOHS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=hcaE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query382
225445955441 PREDICTED: choline monooxygenase, chloro 0.963 0.834 0.777 1e-178
224087207409 predicted protein [Populus trichocarpa] 0.947 0.885 0.765 1e-171
398806204434 choline monooxygenase [Camellia sinensis 0.976 0.859 0.732 1e-168
356562034418 PREDICTED: choline monooxygenase, chloro 0.971 0.887 0.719 1e-167
388501558411 unknown [Medicago truncatula] 0.979 0.909 0.713 1e-165
255554434417 choline monooxygenase, putative [Ricinus 0.958 0.877 0.707 1e-165
449476340417 PREDICTED: LOW QUALITY PROTEIN: choline 0.971 0.889 0.719 1e-163
449442761417 PREDICTED: choline monooxygenase, chloro 0.971 0.889 0.716 1e-163
357479485429 Choline monooxygenase [Medicago truncatu 0.979 0.871 0.686 1e-163
398560057439 choline monooxygenase [Eucalyptus grandi 0.952 0.829 0.705 1e-163
>gi|225445955|ref|XP_002264997.1| PREDICTED: choline monooxygenase, chloroplastic [Vitis vinifera] gi|297735449|emb|CBI17889.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 286/368 (77%), Positives = 326/368 (88%)

Query: 14  AQKLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFS 73
           A  L+++FNP+IP+E+ALTPPSSWYTDPSFLALEL RVFYR WQ VGYT+Q+K+P+DFF+
Sbjct: 73  APTLLHKFNPRIPVEQALTPPSSWYTDPSFLALELDRVFYRGWQAVGYTEQIKNPRDFFT 132

Query: 74  GRIGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKA 133
           GR+G VEFVVCRD+NGK+HAFHNVCRHHAS+LA GSG+KS FVCPYH WTYGLDG LLKA
Sbjct: 133 GRLGNVEFVVCRDNNGKLHAFHNVCRHHASLLAYGSGQKSCFVCPYHAWTYGLDGALLKA 192

Query: 134 TRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILS 193
           TRITGIKDF++ EFGL+PL +ATWGPFVLLN+  +   Q E DS +V  EWLG SS+ILS
Sbjct: 193 TRITGIKDFSINEFGLIPLRIATWGPFVLLNINNDVSPQHEADSKIVGKEWLGSSSDILS 252

Query: 194 INGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKV 253
             GID+SLSY+CRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGL+L+SYST+ +E+V
Sbjct: 253 NGGIDTSLSYVCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLKLESYSTTTFERV 312

Query: 254 SIQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDY 313
           SIQ CE G  E  DD  RLG+KA+YAFIYPNFMINRYGPWMDTNLV+PL P  CKVVFDY
Sbjct: 313 SIQSCEGGPGESEDDFDRLGTKALYAFIYPNFMINRYGPWMDTNLVLPLGPRTCKVVFDY 372

Query: 314 FLDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFH 373
           FL+ SLKDDKAFIE+SL+DSE+VQMEDIILCEGVQRGLESPAYCSGRYAP+VE  M+HFH
Sbjct: 373 FLEASLKDDKAFIERSLEDSERVQMEDIILCEGVQRGLESPAYCSGRYAPTVEMAMHHFH 432

Query: 374 SLLHCNLT 381
            LLH NLT
Sbjct: 433 CLLHENLT 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224087207|ref|XP_002308100.1| predicted protein [Populus trichocarpa] gi|222854076|gb|EEE91623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|398806204|gb|AFP19450.1| choline monooxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|356562034|ref|XP_003549280.1| PREDICTED: choline monooxygenase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|388501558|gb|AFK38845.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255554434|ref|XP_002518256.1| choline monooxygenase, putative [Ricinus communis] gi|223542603|gb|EEF44142.1| choline monooxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449476340|ref|XP_004154710.1| PREDICTED: LOW QUALITY PROTEIN: choline monooxygenase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449442761|ref|XP_004139149.1| PREDICTED: choline monooxygenase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357479485|ref|XP_003610028.1| Choline monooxygenase [Medicago truncatula] gi|355511083|gb|AES92225.1| Choline monooxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|398560057|gb|AFO85434.1| choline monooxygenase [Eucalyptus grandis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query382
TAIR|locus:2123914422 AT4G29890 [Arabidopsis thalian 0.952 0.862 0.685 3.3e-143
UNIPROTKB|G4MVI0435 MGG_12423 "Choline monooxygena 0.829 0.728 0.287 7.4e-34
ASPGD|ASPL0000077543431 AN8656 [Emericella nidulans (t 0.858 0.761 0.259 2.6e-31
UNIPROTKB|P0ABR7374 yeaW [Escherichia coli K-12 (t 0.884 0.903 0.295 4.9e-30
TIGR_CMR|SPO_3681380 SPO_3681 "Rieske 2Fe-2S domain 0.879 0.884 0.282 9.1e-29
TIGR_CMR|SPO_1590363 SPO_1590 "Rieske 2Fe-2S domain 0.866 0.911 0.279 4.5e-27
TIGR_CMR|CPS_4029427 CPS_4029 "iron-sulfur cluster- 0.363 0.325 0.370 9.4e-25
TIGR_CMR|SPO_3678369 SPO_3678 "Rieske 2Fe-2S domain 0.858 0.888 0.262 2.6e-24
UNIPROTKB|O53311382 Rv3161c "POSSIBLE DIOXYGENASE" 0.505 0.505 0.314 1.3e-19
UNIPROTKB|P0ABR5453 hcaE "3-phenylpropionate dioxy 0.246 0.207 0.442 3.9e-18
TAIR|locus:2123914 AT4G29890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1400 (497.9 bits), Expect = 3.3e-143, P = 3.3e-143
 Identities = 251/366 (68%), Positives = 307/366 (83%)

Query:    16 KLVYEFNPQIPIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGR 75
             KLV EF+P+IP+E+A TPPSSWYTDP F + EL RVFY  WQ VGY+DQ+K+ +DFF+GR
Sbjct:    56 KLVTEFDPKIPLERASTPPSSWYTDPQFYSFELDRVFYGGWQAVGYSDQIKESRDFFTGR 115

Query:    76 IGEVEFVVCRDDNGKIHAFHNVCRHHASILATGSGKKSWFVCPYHGWTYGLDGTLLKATR 135
             +G+V+FVVCRD+NGKIHAFHNVC HHASILA+G+G+KS FVC YHGWTY L G+L+KATR
Sbjct:   116 LGDVDFVVCRDENGKIHAFHNVCSHHASILASGNGRKSCFVCLYHGWTYSLSGSLVKATR 175

Query:   136 ITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSN-VVANEWLGGSSEILSI 194
             ++GI++F++ E GL PL VA WGPFVLL +      + EV+++ +VA+EWLG S   LS 
Sbjct:   176 MSGIQNFSLSEMGLKPLRVAVWGPFVLLKVTAATSRKGEVETDELVASEWLGTSVGRLSQ 235

Query:   195 NGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVS 254
              G+DS LSY+CRREYTI+CNWKVFCDNYLDGGYHVPYAHKGL SGL L++YST+++EKVS
Sbjct:   236 GGVDSPLSYICRREYTIDCNWKVFCDNYLDGGYHVPYAHKGLMSGLDLETYSTTIFEKVS 295

Query:   255 IQRCESGSTEGTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYF 314
             IQ C  GS  G D   RLGS+A+YAF+YPNFMINRYGPWMDTNLV+PL P +CKVVFDYF
Sbjct:   296 IQECGGGSKVGEDGFDRLGSEALYAFVYPNFMINRYGPWMDTNLVLPLGPRKCKVVFDYF 355

Query:   315 LDGSLKDDKAFIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHS 374
             LD SLKDD+AFI++SL++S++VQMED++LCE VQRGLES AY  GRYA  VE+ M+HFH 
Sbjct:   356 LDPSLKDDEAFIKRSLEESDRVQMEDVMLCESVQRGLESQAYDKGRYA-LVEKPMHHFHC 414

Query:   375 LLHCNL 380
             LLH NL
Sbjct:   415 LLHHNL 420
GO:0005506 "iron ion binding" evidence=IEA
GO:0006725 "cellular aromatic compound metabolic process" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
UNIPROTKB|G4MVI0 MGG_12423 "Choline monooxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000077543 AN8656 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|P0ABR7 yeaW [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3681 SPO_3681 "Rieske 2Fe-2S domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1590 SPO_1590 "Rieske 2Fe-2S domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4029 CPS_4029 "iron-sulfur cluster-binding protein, Rieske family" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3678 SPO_3678 "Rieske 2Fe-2S domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|O53311 Rv3161c "POSSIBLE DIOXYGENASE" [Mycobacterium tuberculosis H37Rv (taxid:83332)] Back     alignment and assigned GO terms
UNIPROTKB|P0ABR5 hcaE "3-phenylpropionate dioxygenase, alpha subunit" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SZR0CHMO_ARATH1, ., 1, 4, ., 1, 5, ., 70.68570.95280.8625yesno
O04121CHMO_SPIOL1, ., 1, 4, ., 1, 5, ., 70.53550.94240.8200N/Ano
Q9LKN0CHMO_ATRHO1, ., 1, 4, ., 1, 5, ., 70.52340.92930.8105N/Ano
O22553CHMO_BETVU1, ., 1, 4, ., 1, 5, ., 70.52580.93970.8049N/Ano
Q93XE1CHMO_AMATR1, ., 1, 4, ., 1, 5, ., 70.52230.97120.8393N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.13.82LOW CONFIDENCE prediction!
3rd Layer1.14.13LOW CONFIDENCE prediction!
3rd Layer1.14.150.963
4th Layer1.14.15.70.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00031302001
SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (441 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00032812001
hypothetical protein LOC100259354 (520 aa)
  •   • 0.423

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
cd08883175 cd08883, RHO_alpha_C_CMO-like, C-terminal catalyti 3e-89
cd03541118 cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron 8e-68
COG4638367 COG4638, HcaE, Phenylpropionate dioxygenase and re 8e-44
pfam00848201 pfam00848, Ring_hydroxyl_A, Ring hydroxylating alp 2e-40
cd03469118 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron o 1e-38
cd00680188 cd00680, RHO_alpha_C, C-terminal catalytic domain 1e-31
cd08886182 cd08886, RHO_alpha_C_2, C-terminal catalytic domai 3e-28
cd03538146 cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme ir 3e-23
TIGR03228438 TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxyge 1e-22
cd03535123 cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron 5e-19
cd03545150 cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-he 3e-18
pfam0035599 pfam00355, Rieske, Rieske [2Fe-2S] domain 4e-18
cd03472128 cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-hem 1e-16
TIGR03229433 TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenas 1e-15
cd03539129 cd03539, Rieske_RO_Alpha_S5H, This alignment model 2e-14
cd03542123 cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iro 8e-14
cd0346798 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster 2e-13
cd08884205 cd08884, RHO_alpha_C_GbcA-like, C-terminal catalyt 6e-13
cd08887185 cd08887, RHO_alpha_C_3, C-terminal catalytic domai 5e-10
cd08885190 cd08885, RHO_alpha_C_1, C-terminal catalytic domai 7e-10
cd03536123 cd03536, Rieske_RO_Alpha_DTDO, This alignment mode 2e-08
cd03531115 cd03531, Rieske_RO_Alpha_KSH, The alignment model 5e-07
cd04337129 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a o 2e-06
PLN02281536 PLN02281, PLN02281, chlorophyllide a oxygenase 6e-06
cd03479144 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-hem 6e-06
cd0347791 cd03477, Rieske_YhfW_C, YhfW family, C-terminal Ri 1e-05
COG2146106 COG2146, {NirD}, Ferredoxin subunits of nitrite re 3e-05
cd03532116 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-hem 1e-04
cd08882243 cd08882, RHO_alpha_C_MupW-like, C-terminal catalyt 2e-04
cd08879237 cd08879, RHO_alpha_C_AntDO-like, C-terminal cataly 2e-04
PLN00095394 PLN00095, PLN00095, chlorophyllide a oxygenase; Pr 2e-04
cd04338134 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa L 4e-04
cd03548136 cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-hem 0.003
cd08881206 cd08881, RHO_alpha_C_NDO-like, C-terminal catalyti 0.003
>gnl|CDD|176892 cd08883, RHO_alpha_C_CMO-like, C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information 
 Score =  266 bits (681), Expect = 3e-89
 Identities = 100/177 (56%), Positives = 128/177 (72%), Gaps = 3/177 (1%)

Query: 205 CRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQRCESGSTE 264
            RREY IECNWKV+ DNYL  GYHVP+AH GLA+ L   +Y T L+E VS+Q   + + E
Sbjct: 2   ARREYVIECNWKVYVDNYL-EGYHVPFAHPGLAAVLDYATYRTELFEYVSLQSAPARAEE 60

Query: 265 GTDDTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTRCKVVFDYFLDGSLKDDKA 324
           G+   +RLG+ A+YA+IYPN M+NRY P MD N+V+PL P RCKVVFDYF+D S   D+A
Sbjct: 61  GSFF-YRLGNAALYAWIYPNLMLNRYPPGMDVNVVLPLGPERCKVVFDYFVDDSDGSDEA 119

Query: 325 FIEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLT 381
           FI +S++ S++VQ EDI +CE VQRGLES AY  GR++P  E  ++HFH LL   L 
Sbjct: 120 FIAESIE-SDRVQKEDIEICESVQRGLESGAYDPGRFSPKRENGVHHFHRLLAQALN 175

C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-terminal domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. Plant choline monooxygenase catalyzes the first step in a two-step oxidation of choline to the osmoprotectant glycine betaine. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Length = 175
>gnl|CDD|239614 cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>gnl|CDD|226985 COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|216149 pfam00848, Ring_hydroxyl_A, Ring hydroxylating alpha subunit (catalytic domain) Back     alignment and domain information
>gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms Back     alignment and domain information
>gnl|CDD|176852 cd00680, RHO_alpha_C, C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>gnl|CDD|176895 cd08886, RHO_alpha_C_2, C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>gnl|CDD|239612 cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>gnl|CDD|132272 TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large subunit Back     alignment and domain information
>gnl|CDD|239609 cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>gnl|CDD|239616 cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins Back     alignment and domain information
>gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain Back     alignment and domain information
>gnl|CDD|239554 cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) Back     alignment and domain information
>gnl|CDD|132273 TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenase, large subunit Back     alignment and domain information
>gnl|CDD|239613 cd03539, Rieske_RO_Alpha_S5H, This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) Back     alignment and domain information
>gnl|CDD|239615 cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes Back     alignment and domain information
>gnl|CDD|176893 cd08884, RHO_alpha_C_GbcA-like, C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>gnl|CDD|176896 cd08887, RHO_alpha_C_3, C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>gnl|CDD|176894 cd08885, RHO_alpha_C_1, C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>gnl|CDD|239610 cd03536, Rieske_RO_Alpha_DTDO, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO) Back     alignment and domain information
>gnl|CDD|239607 cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) Back     alignment and domain information
>gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b Back     alignment and domain information
>gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase Back     alignment and domain information
>gnl|CDD|239561 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) Back     alignment and domain information
>gnl|CDD|239559 cd03477, Rieske_YhfW_C, YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain Back     alignment and domain information
>gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>gnl|CDD|176891 cd08882, RHO_alpha_C_MupW-like, C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>gnl|CDD|176888 cd08879, RHO_alpha_C_AntDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>gnl|CDD|165668 PLN00095, PLN00095, chlorophyllide a oxygenase; Provisional Back     alignment and domain information
>gnl|CDD|239830 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane Back     alignment and domain information
>gnl|CDD|239617 cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>gnl|CDD|176890 cd08881, RHO_alpha_C_NDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 382
TIGR03228438 anthran_1_2_A anthranilate 1,2-dioxygenase, large 100.0
TIGR03229433 benzo_1_2_benA benzoate 1,2-dioxygenase, large sub 100.0
COG4638367 HcaE Phenylpropionate dioxygenase and related ring 100.0
PLN02281536 chlorophyllide a oxygenase 100.0
PLN02518 539 pheophorbide a oxygenase 100.0
cd03545150 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox 100.0
PLN00095394 chlorophyllide a oxygenase; Provisional 100.0
cd03538146 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena 100.0
cd03541118 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase 100.0
cd03472128 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy 100.0
cd03539129 Rieske_RO_Alpha_S5H This alignment model represent 100.0
cd04338134 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate 99.98
cd03479144 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy 99.97
cd04337129 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) 99.97
cd03535123 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase 99.97
cd03536123 Rieske_RO_Alpha_DTDO This alignment model represen 99.97
cd03537123 Rieske_RO_Alpha_PrnD This alignment model represen 99.97
cd03531115 Rieske_RO_Alpha_KSH The alignment model represents 99.97
cd03480138 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase 99.97
cd03548136 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy 99.96
cd03542123 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas 99.96
cd03532116 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy 99.96
cd08883175 RHO_alpha_C_CMO-like C-terminal catalytic domain o 99.96
cd03469118 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase ( 99.96
cd08885190 RHO_alpha_C_1 C-terminal catalytic domain of the o 99.95
cd08884205 RHO_alpha_C_GbcA-like C-terminal catalytic domain 99.95
cd08886182 RHO_alpha_C_2 C-terminal catalytic domain of the o 99.95
cd08887185 RHO_alpha_C_3 C-terminal catalytic domain of the o 99.94
cd00680188 RHO_alpha_C C-terminal catalytic domain of the oxy 99.93
cd0352898 Rieske_RO_ferredoxin Rieske non-heme iron oxygenas 99.93
cd03474108 Rieske_T4moC Toluene-4-monooxygenase effector prot 99.92
cd0353098 Rieske_NirD_small_Bacillus Small subunit of nitrit 99.92
TIGR02377101 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE 99.91
cd03529103 Rieske_NirD Assimilatory nitrite reductase (NirD) 99.91
TIGR02378105 nirD_assim_sml nitrite reductase [NAD(P)H], small 99.91
cd0347895 Rieske_AIFL_N AIFL (apoptosis-inducing factor like 99.89
PRK09965106 3-phenylpropionate dioxygenase ferredoxin subunit; 99.89
PF00848209 Ring_hydroxyl_A: Ring hydroxylating alpha subunit 99.89
PF0035597 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794 99.87
PF13806104 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 99.87
cd08882243 RHO_alpha_C_MupW-like C-terminal catalytic domain 99.86
PRK09511108 nirD nitrite reductase small subunit; Provisional 99.86
cd0347791 Rieske_YhfW_C YhfW family, C-terminal Rieske domai 99.85
cd0346798 Rieske Rieske domain; a [2Fe-2S] cluster binding d 99.84
COG2146106 {NirD} Ferredoxin subunits of nitrite reductase an 99.84
cd08880222 RHO_alpha_C_ahdA1c-like C-terminal catalytic domai 99.82
cd03471126 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co 99.79
cd03476126 Rieske_ArOX_small Small subunit of Arsenite oxidas 99.78
cd03473107 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha 99.72
cd08878196 RHO_alpha_C_DMO-like C-terminal catalytic domain o 99.71
cd08879237 RHO_alpha_C_AntDO-like C-terminal catalytic domain 99.69
TIGR02694129 arsenite_ox_S arsenite oxidase, small subunit. Thi 99.69
cd03470126 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co 99.67
cd08881206 RHO_alpha_C_NDO-like C-terminal catalytic domain o 99.66
PRK13474178 cytochrome b6-f complex iron-sulfur subunit; Provi 99.52
TIGR01416174 Rieske_proteo ubiquinol-cytochrome c reductase, ir 99.42
cd03475171 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma 99.09
COG0723177 QcrA Rieske Fe-S protein [Energy production and co 98.68
TIGR03171321 soxL2 Rieske iron-sulfur protein SoxL2. This iron- 98.35
KOG1671210 consensus Ubiquinol cytochrome c reductase, subuni 98.34
PF0841792 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 97.47
PF11723240 Aromatic_hydrox: Homotrimeric ring hydroxylase; In 97.12
KOG1336 478 consensus Monodehydroascorbate/ferredoxin reductas 95.64
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit Back     alignment and domain information 
Probab=100.00  E-value=3.9e-56  Score=435.80  Aligned_cols=316  Identities=24%  Similarity=0.438  Sum_probs=239.7

Q ss_pred             ccCCCCCCCccCCHHHHHHHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCcccc
Q 039874           28 EKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILAT  107 (382)
Q Consensus        28 ~~~~~lp~~~Y~~~~~~~~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~  107 (382)
                      +...++|.+.|+|+++|++|+++||.+.|++||+++|||++|+|+++.+++++|||+|++||+++||.|+|||||++|+.
T Consensus        11 ~~~~~v~~~~ytd~~if~~E~~~IF~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~~N~C~HRGa~L~~   90 (438)
T TIGR03228        11 DGVFRIARDMFTEPELFDLEMELIFEKNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHALVNACQHRGATLTR   90 (438)
T ss_pred             cCceecChheECCHHHHHHHHHHHHhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEcccCCCCCCcccc
Confidence            34557999999999999999999999999999999999999999999999999999999999999999999999999994


Q ss_pred             -CCCCcceEEccCCCceecCCCceeecccccCC-CCCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhHhhh
Q 039874          108 -GSGKKSWFVCPYHGWTYGLDGTLLKATRITGI-KDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWL  185 (382)
Q Consensus       108 -g~~~~~~i~CpyHgw~f~~~G~~~~~p~~~~~-~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l  185 (382)
                       ++++.+.|+||||||+|++||+|+++|..... +.|+++..+|++++|++++||||+++++++.        +++.+||
T Consensus        91 ~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~--------~~l~e~l  162 (438)
T TIGR03228        91 VGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAAT--------DSLEDFL  162 (438)
T ss_pred             CCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCC--------CCHHHHh
Confidence             88988999999999999999999999975443 4688888999999999999999999998752        3799999


Q ss_pred             CChhhhhhhc----CCCCCeEEE-EEEEEEeCcccchhhhhcCCCCCCCCCcCccccccCCc--------c------ccc
Q 039874          186 GGSSEILSIN----GIDSSLSYL-CRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQL--------D------SYS  246 (382)
Q Consensus       186 ~~~~~~l~~~----~~d~~~~~~-~~~~~~~~~NWK~~vEN~~D~~yH~~~vH~~~~~~~~~--------~------~~~  246 (382)
                      |++...+..+    +. ..++.+ +..++.++||||+++||++| +||++++|++++.....        .      .+.
T Consensus       163 g~~~~~ld~~~~~~~~-g~le~~~~~~~~~~~~NWKl~~EN~~D-~YH~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (438)
T TIGR03228       163 GDARVFLDMMVAQSPT-GELEVLPGKSAYTYAGNWKLQNENGLD-GYHVSTVHYNYVATVQHRQQVNAAKGGELATLDYS  240 (438)
T ss_pred             hhHHHHHHHHhhccCc-CceEEecceEEEEeCCchHHHHHhccc-cccchhhChhhHhhhhhhcccccccccCccccccc
Confidence            9876655433    22 235544 35678999999999999999 89999999986532110        0      000


Q ss_pred             cc------------cc-CceeeeeecCCCCCCCccc--------cccCC--------ccEEEEecCceeeccCCCeEEEE
Q 039874          247 TS------------LY-EKVSIQRCESGSTEGTDDT--------HRLGS--------KAIYAFIYPNFMINRYGPWMDTN  297 (382)
Q Consensus       247 ~~------------~~-~~~~~~~~~~~~~~~~~~~--------~~~g~--------~~~~~~lfPn~~i~~~~~~~~~~  297 (382)
                      ..            .. ..+++...........+.+        ..+|.        ......||||+.+..... ..+.
T Consensus       241 ~~~~~~~~~~~~~~~~~nGH~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~n~~iFPNl~~~~~~~-~~iR  319 (438)
T TIGR03228       241 KLGAGDAETDDGWFSFKNGHSVLFSEMPNPAVRPGYASVMPRLVAEFGQARAEWMMHRLRNLNLYPSLFFMDQIS-SQLR  319 (438)
T ss_pred             cccccccccCcceEecCCCcEEEeeccCCccccchhhHHHHHHHHHhCchhhHhhhccceEEEECCceeeeccCC-ceEE
Confidence            00            00 0111111110000000101        11221        123457999999875432 2678


Q ss_pred             EEEEcCCCeEEEEEEEEEcCCCCChH--HHH---HHhccccCCchhhHHHHHHHHhhcccCC
Q 039874          298 LVIPLAPTRCKVVFDYFLDGSLKDDK--AFI---EQSLKDSEQVQMEDIILCEGVQRGLESP  354 (382)
Q Consensus       298 ~~~P~s~~~t~v~~~~~~~~~~~~~~--~~~---~~~~~~~~~v~~ED~~i~e~~q~~l~s~  354 (382)
                      .+.|+++++|+++++.+..+++++..  ..+   +.++...+.+..+|.++++.+|+|+..+
T Consensus       320 v~~P~~~d~tev~~~~~~~k~~~~e~~~~r~r~~~~~~gpsG~~~~DD~e~~~~~q~g~~~~  381 (438)
T TIGR03228       320 IIRPVAWNKTEIISQCIGVKGESDADRENRIRQFEDFFNVSGMGTPDDLVEFREAQRGFQGR  381 (438)
T ss_pred             EEEeCCCCeEEEEEEEEEECCCCHHHHHHHHHHHhcccCCccCCCCchHHHHHHHHHHhccC
Confidence            89999999999999888888765421  111   2334567788899999999999999864

Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit Back     alignment and domain information
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>PLN02281 chlorophyllide a oxygenase Back     alignment and domain information
>PLN02518 pheophorbide a oxygenase Back     alignment and domain information
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins Back     alignment and domain information
>PLN00095 chlorophyllide a oxygenase; Provisional Back     alignment and domain information
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) Back     alignment and domain information
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) Back     alignment and domain information
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane Back     alignment and domain information
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) Back     alignment and domain information
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b Back     alignment and domain information
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO) Back     alignment and domain information
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) Back     alignment and domain information
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) Back     alignment and domain information
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) Back     alignment and domain information
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms Back     alignment and domain information
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases Back     alignment and domain information
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) Back     alignment and domain information
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain Back     alignment and domain information
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily Back     alignment and domain information
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium Back     alignment and domain information
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit Back     alignment and domain information
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) Back     alignment and domain information
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional Back     alignment and domain information
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols [] Back     alignment and domain information
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types Back     alignment and domain information
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A Back     alignment and domain information
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>PRK09511 nirD nitrite reductase small subunit; Provisional Back     alignment and domain information
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain Back     alignment and domain information
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes Back     alignment and domain information
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp Back     alignment and domain information
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate Back     alignment and domain information
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit Back     alignment and domain information
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases Back     alignment and domain information
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional Back     alignment and domain information
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit Back     alignment and domain information
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion] Back     alignment and domain information
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2 Back     alignment and domain information
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion] Back     alignment and domain information
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO) Back     alignment and domain information
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium Back     alignment and domain information
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
3vca_A412 Quaternary Ammonium Oxidative Demethylation: X-Ray 4e-22
3n0q_A409 Crystal Structure Of A Putative Aromatic-Ring Hydro 1e-18
3en1_A450 Crystal Structure Of Toluene 2,3-Dioxygenase Length 2e-17
2xr8_A459 Crystal Structure Of Biphenyl Dioxygenase From Burk 3e-17
2xsh_A459 Crystal Structure Of P4 Variant Of Biphenyl Dioxyge 3e-17
2yfi_A459 Crystal Structure Of Biphenyl Dioxygenase Variant R 3e-17
2b1x_A470 Crystal Structure Of Naphthalene 1,2-dioxygenase Fr 6e-17
2gbw_A454 Crystal Structure Of Biphenyl 2,3-Dioxygenase From 3e-16
2bmo_A447 The Crystal Structure Of Nitrobenzene Dioxygenase L 1e-15
1uli_A460 Biphenyl Dioxygenase (bpha1a2) Derived From Rhodoco 1e-15
2ckf_A454 Crystal Structure Of The Terminal Component Of The 5e-15
3gzx_A457 Crystal Structure Of The Biphenyl Dioxygenase In Co 2e-14
2hmj_A449 Crystal Structure Of The Naphthalene 1,2-Dioxygenas 4e-14
1ndo_A449 Napthalene 1,2-Dioxygenase Length = 449 4e-14
1wql_A459 Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluor 4e-13
2zyl_A386 Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxyl 3e-04
3gke_A349 Crystal Structure Of Dicamba Monooxygenase Length = 9e-04
>pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray Crystallographic, Resonance Raman And Uv-Visible Spectroscopic Analysis Of A Rieske- Type Demethylase Length = 412 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 160/390 (41%), Gaps = 76/390 (19%)
Query: 37  WYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHN 96
           +YT P   AL+L  +FY+ W       QL     + + R+G  E V+ R  +G++ AFHN
Sbjct: 25  FYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHN 84
Query: 97  VCRHHASILATG-SGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVA 155
            CRH  S++     G+ +  VCPYH WTY LDG L+ A  +    DF+  ++GL P+ + 
Sbjct: 85  SCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMG--PDFDASKYGLKPVNLR 142
Query: 156 TWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGI-DSSLSYLCRREYTI--E 212
                + + +          D+      +   +   L ++ + D+ +++      TI  +
Sbjct: 143 NLDGLIYICLS---------DTPPDFQTFAQLARPYLEVHDLKDAKVAFTS----TIIEK 189
Query: 213 CNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYE--------KVSIQRCESGSTE 264
            NWK+  +N  +  YH    H  L     LD     +          +    RCE+  T 
Sbjct: 190 GNWKLVWENNRE-CYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEAAGTP 248
Query: 265 GT-----DDTHRLG------------------------------SKAIYAFIYPNFMINR 289
                  D  +RL                               +  +  F YP+   N 
Sbjct: 249 AQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPS-TWNH 307
Query: 290 YGPWMDTNL---VIPLAPTRCKVVFDYFLDGSLKDDKAFIEQSLKDSEQVQM----EDII 342
           + P  D +L   V+P++PT  +V   + +    KD    ++  LK   +V +    ED  
Sbjct: 308 FLP--DHSLTFRVMPISPTETEVTTTWLVH---KDAVEGVDYDLKRLTEVWIATNDEDRE 362
Query: 343 LCEGVQRGLESPAYCSGRYAPSVEQTMYHF 372
           + E  Q+G+ SPAY  G Y+P  E  +  F
Sbjct: 363 IVETNQQGILSPAYVPGPYSPGQESGVMQF 392
>pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring Hydroxylating Dioxygenase (Tm1040_3219) From Silicibacter Sp. Tm1040 At 1 Resolution Length = 409 Back     alignment and structure
>pdb|3EN1|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Length = 450 Back     alignment and structure
>pdb|2XR8|A Chain A, Crystal Structure Of Biphenyl Dioxygenase From Burkholderia Xenovorans Lb400 Length = 459 Back     alignment and structure
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase From Burkholderia Xenovorans Lb400 In Complex With 2,6 Di Chlorobiphenyl Length = 459 Back     alignment and structure
>pdb|2YFI|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41 (Bpdo-Rr41) Length = 459 Back     alignment and structure
>pdb|2B1X|A Chain A, Crystal Structure Of Naphthalene 1,2-dioxygenase From Rhodococcus Sp. Length = 470 Back     alignment and structure
>pdb|2GBW|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From Sphingomonas Yanoikuyae B1 Length = 454 Back     alignment and structure
>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase Length = 447 Back     alignment and structure
>pdb|1ULI|A Chain A, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus Sp. Strain Rha1 Length = 460 Back     alignment and structure
>pdb|2CKF|A Chain A, Crystal Structure Of The Terminal Component Of The Pah- Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1 Length = 454 Back     alignment and structure
>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex With Biphenyl From Comamonas Testosteroni Sp. Strain B-356 Length = 457 Back     alignment and structure
>pdb|2HMJ|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase Phe-352-Val Mutant. Length = 449 Back     alignment and structure
>pdb|1NDO|A Chain A, Napthalene 1,2-Dioxygenase Length = 449 Back     alignment and structure
>pdb|1WQL|A Chain A, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens Ip01 Length = 459 Back     alignment and structure
>pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase (Ksha) From M. Tuberculosis Length = 386 Back     alignment and structure
>pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase Length = 349 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
3n0q_A409 Putative aromatic-ring hydroxylating dioxygenase; 3e-92
3vca_A412 Ring-hydroxylating dioxygenase; rieske-type, monon 3e-88
2b1x_A470 Naphthalene dioxygenase large subunit; rieske non- 5e-66
2gbw_A454 Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy 6e-61
2bmo_A447 Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni 8e-60
1uli_A460 Biphenyl dioxygenase large subunit; alpha3 BETA3 h 9e-55
3gzx_A457 Biphenyl dioxygenase subunit alpha; rieskie, non-h 2e-54
3gcf_A394 Terminal oxygenase component of carbazole 1,9A- di 5e-27
3gkq_A389 Terminal oxygenase component of carbazole 1,9A- di 1e-19
3gke_A349 DDMC; rieske cluster, non-heme mononuclear iron, o 4e-17
2zyl_A386 Possible oxidoreductase; KSHA, cholesterol, rieske 4e-15
2de6_A392 Terminal oxygenase component of carbazole; electro 8e-15
1z01_A446 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen 1e-13
3dqy_A106 Toluene 1,2-dioxygenase system ferredoxin subunit; 2e-08
3d89_A157 Rieske domain-containing protein; CAsp target, rie 8e-08
2qpz_A103 Naphthalene 1,2-dioxygenase system ferredoxin subu 9e-08
1vm9_A111 Toluene-4-monooxygenase system protein C; structur 1e-07
2de6_D115 Ferredoxin component of carbazole; electron transf 2e-07
3gce_A121 Ferredoxin component of carbazole 1,9A- dioxygenas 5e-07
3c0d_A119 Putative nitrite reductase NADPH (small subunit) o 7e-07
1fqt_A112 Rieske-type ferredoxin of biphenyl dioxygenase; 2F 8e-07
2jo6_A113 Nitrite reductase [NAD(P)H] small subunit; all bet 1e-06
2i7f_A108 Ferredoxin component of dioxygenase; rieske ferred 1e-06
2jza_A130 Nitrite reductase [NAD(P)H] small subunit; ISP dom 4e-06
1rfs_A139 Rieske protein; iron-sulfur protein, electron tran 3e-05
3azc_A133 Cytochrome B6-F complex iron-sulfur subunit; riesk 3e-04
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Length = 409 Back     alignment and structure
 Score =  281 bits (722), Expect = 3e-92
 Identities = 79/401 (19%), Positives = 133/401 (33%), Gaps = 57/401 (14%)

Query: 26  PIEKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCR 85
                     ++YTD      +L  +FY+ W       +L  P  + + ++G    ++ R
Sbjct: 12  NHRAGHALDQAFYTDAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVR 71

Query: 86  DDNGKIHAFHNVCRHHASILATG-SGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNV 144
             +  I AFHN CRH  S++     G     VCPYH WTY LDG LL A  +    DF  
Sbjct: 72  GADNVIRAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMG--PDFEP 129

Query: 145 KEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGSSEILSINGIDSSLSYL 204
              GL  +        + + +  EA    + +       +   +   L ++ +  +    
Sbjct: 130 SRHGLKTVHCRELAGLIYICLADEA---PDFE------RFAEVARPYLEVHDLS-NAKVA 179

Query: 205 CRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQLDSYSTSLYEKVSIQRC------ 258
                    NWK+  +N  +  YH    H  L      D   T +    +          
Sbjct: 180 HESSIVERGNWKLVWENNRE-CYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDR 238

Query: 259 -----------------------------ESGSTEGTDDTHRLGSK-------AIYAFIY 282
                                        ES + +G     R   +       ++  F Y
Sbjct: 239 CEQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHY 298

Query: 283 PNFMINRYGPWMDTNLVIPLAPTRCKVVFD-YFLDGSLKDDKAFIEQSLKDSEQVQMEDI 341
           P    +          V P++PT  +V         +++     +++  +       ED 
Sbjct: 299 PTTWNHFLSDHSIVFRVTPISPTETEVTTKWLVHKDAVEGVDYDLQRLTEVWIATNDEDR 358

Query: 342 ILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLTN 382
            + E  Q G+ SPAY  G Y+P+ E  +  F       L  
Sbjct: 359 EVVEFNQMGINSPAYEPGPYSPTQESGVLQFVEWYLSTLKR 399
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Length = 412 Back     alignment and structure
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Length = 470 Back     alignment and structure
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Length = 454 Back     alignment and structure
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Length = 447 Back     alignment and structure
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Length = 460 Back     alignment and structure
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* Length = 457 Back     alignment and structure
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Length = 394 Back     alignment and structure
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Length = 389 Back     alignment and structure
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Length = 349 Back     alignment and structure
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Length = 386 Back     alignment and structure
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Length = 392 Back     alignment and structure
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Length = 446 Back     alignment and structure
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Length = 106 Back     alignment and structure
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Length = 157 Back     alignment and structure
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Length = 103 Back     alignment and structure
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Length = 111 Back     alignment and structure
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Length = 115 Back     alignment and structure
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121 Back     alignment and structure
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Length = 119 Back     alignment and structure
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Length = 112 Back     alignment and structure
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Length = 113 Back     alignment and structure
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Length = 108 Back     alignment and structure
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Length = 130 Back     alignment and structure
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C* Length = 139 Back     alignment and structure
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus} Length = 133 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query382
3n0q_A409 Putative aromatic-ring hydroxylating dioxygenase; 100.0
3vca_A412 Ring-hydroxylating dioxygenase; rieske-type, monon 100.0
3gzx_A457 Biphenyl dioxygenase subunit alpha; rieskie, non-h 100.0
2b1x_A470 Naphthalene dioxygenase large subunit; rieske non- 100.0
2gbw_A454 Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy 100.0
2bmo_A447 Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni 100.0
1uli_A460 Biphenyl dioxygenase large subunit; alpha3 BETA3 h 100.0
1z01_A446 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen 100.0
3gke_A349 DDMC; rieske cluster, non-heme mononuclear iron, o 100.0
2zyl_A386 Possible oxidoreductase; KSHA, cholesterol, rieske 100.0
2de6_A392 Terminal oxygenase component of carbazole; electro 100.0
3gkq_A389 Terminal oxygenase component of carbazole 1,9A- di 100.0
3gcf_A394 Terminal oxygenase component of carbazole 1,9A- di 100.0
2qpz_A103 Naphthalene 1,2-dioxygenase system ferredoxin subu 99.95
1fqt_A112 Rieske-type ferredoxin of biphenyl dioxygenase; 2F 99.95
1vm9_A111 Toluene-4-monooxygenase system protein C; structur 99.95
2i7f_A108 Ferredoxin component of dioxygenase; rieske ferred 99.95
2de6_D115 Ferredoxin component of carbazole; electron transf 99.95
3dqy_A106 Toluene 1,2-dioxygenase system ferredoxin subunit; 99.95
3d89_A157 Rieske domain-containing protein; CAsp target, rie 99.94
3gce_A121 Ferredoxin component of carbazole 1,9A- dioxygenas 99.94
2jo6_A113 Nitrite reductase [NAD(P)H] small subunit; all bet 99.94
2jza_A130 Nitrite reductase [NAD(P)H] small subunit; ISP dom 99.94
3c0d_A119 Putative nitrite reductase NADPH (small subunit) o 99.94
4aiv_A119 Probable nitrite reductase [NAD(P)H] small subuni; 99.93
1rie_A129 Rieske iron-sulfur protein; oxidoreductase, cytoch 99.88
1rfs_A139 Rieske protein; iron-sulfur protein, electron tran 99.87
1g8k_B133 Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, 99.86
4aay_B175 AROB; oxidoreductase, rieske, iron sulfur, molybdo 99.82
3azc_A133 Cytochrome B6-F complex iron-sulfur subunit; riesk 99.69
3cx5_E185 Cytochrome B-C1 complex subunit rieske, mitochondr 99.78
1pp9_E196 Ubiquinol-cytochrome C reductase iron-sulfur SUBU 99.77
2nwf_A141 Ubiquinol-cytochrome C reductase iron-sulfur SUBU; 99.76
2qjy_C187 Ubiquinol-cytochrome C reductase iron-sulfur SUBU; 99.76
1nyk_A165 Rieske iron-sulfur protein; beta barrel, iron sulf 99.74
1vf5_D179 Rieske iron-sulfur protein; photosynthesis, membra 99.7
1jm1_A204 Rieske iron-sulfur protein SOXF; electron transpor 99.65
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Back     alignment and structure
Probab=100.00  E-value=9.5e-68  Score=518.34  Aligned_cols=339  Identities=22%  Similarity=0.400  Sum_probs=280.8

Q ss_pred             CCCCCCCccCCHHHHHHHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCcccc-C
Q 039874           30 ALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILAT-G  108 (382)
Q Consensus        30 ~~~lp~~~Y~~~~~~~~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~-g  108 (382)
                      +.+||+++|+|+++|++|+++||++.|++||++++|+++|++++++++|++|+|+|+.+|+++||.|+|||||++|+. |
T Consensus        16 ~~~lp~~~Y~d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~C~Hrga~L~~~g   95 (409)
T 3n0q_A           16 GHALDQAFYTDAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAK   95 (409)
T ss_dssp             TBCCCHHHHHCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSS
T ss_pred             cccCCHHHcCCHHHHHHHHHHHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEeecCcCCcCcCCccCcC
Confidence            578999999999999999999999999999999999989999999999999999999999999999999999999994 8


Q ss_pred             CCCcceEEccCCCceecCCCceeecccccCCCCCCccCCCCcceeeEEECcEEEEEcCCCccccccccccchhHhhhCCh
Q 039874          109 SGKKSWFVCPYHGWTYGLDGTLLKATRITGIKDFNVKEFGLVPLEVATWGPFVLLNMGKEAVHQEEVDSNVVANEWLGGS  188 (382)
Q Consensus       109 ~~~~~~i~CpyHgw~f~~~G~~~~~p~~~~~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~~~~~~~~~~~~~~e~l~~~  188 (382)
                      .++++.|+||||||+||++|+|+.+|..+  +++++...+|++++|++++|+|||++++++         ++++++++++
T Consensus        96 ~~~~~~i~CpyHgw~fd~dG~~~~~P~~~--~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~---------~~l~~~l~~~  164 (409)
T 3n0q_A           96 KGNNPKLVCPYHQWTYELDGRLLWARDMG--PDFEPSRHGLKTVHCRELAGLIYICLADEA---------PDFERFAEVA  164 (409)
T ss_dssp             EEECSSEECTTTCCEECTTSCEEECTTCC--TTCCGGGCSCCEEEEEEETTEEEEECSSSC---------CCCHHHHHHH
T ss_pred             ccCCCEEEECCCCCEEeCCCCcccCCcCC--cccCcccCCCceEEEEEECCEEEEEeCCCC---------CChHHhhhhh
Confidence            88888999999999999999999999764  356777899999999999999999999876         3678888877


Q ss_pred             hhhhhhcCCCCCeEEEEEEEEEeCcccchhhhhcCCCCCCCCCcCccccccCCc-c--------cccc------------
Q 039874          189 SEILSINGIDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLQL-D--------SYST------------  247 (382)
Q Consensus       189 ~~~l~~~~~d~~~~~~~~~~~~~~~NWK~~vEN~~D~~yH~~~vH~~~~~~~~~-~--------~~~~------------  247 (382)
                      ...+..+++ +++.+.....+.++||||+++||++| +||++++|+++++.+.. .        .+..            
T Consensus       165 ~~~l~~~~~-~~~~~~~~~~~~~~~NWK~~~EN~~D-~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (409)
T 3n0q_A          165 RPYLEVHDL-SNAKVAHESSIVERGNWKLVWENNRE-CYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQA  242 (409)
T ss_dssp             HHHHHTTCG-GGEEEEEEEEEEESSCHHHHHHHHTC-CTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHHHHT
T ss_pred             hhhhccccC-CCeEEeeEEEEEEecchHhhhhhccc-cccccccCcchhhccccccccccccccccccchhhhhhhhhcc
Confidence            788888877 56776667788999999999999999 89999999998764321 0        0000            


Q ss_pred             --c--c----cCceeeeeecCCCC---CCCc----------cccccCCccEEEEecCceeeccCCCeEEEEEEEEcCCCe
Q 039874          248 --S--L----YEKVSIQRCESGST---EGTD----------DTHRLGSKAIYAFIYPNFMINRYGPWMDTNLVIPLAPTR  306 (382)
Q Consensus       248 --~--~----~~~~~~~~~~~~~~---~~~~----------~~~~~g~~~~~~~lfPn~~i~~~~~~~~~~~~~P~s~~~  306 (382)
                        .  +    .+++++++.+....   ...+          .+...+....+.++|||+++..+++++.++++.|+|+++
T Consensus       243 g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~pd~~~~~~~~P~~p~~  322 (409)
T 3n0q_A          243 GMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFLSDHSIVFRVTPISPTE  322 (409)
T ss_dssp             TCCCCCEECTTSSEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEECSSCEEEEEEEEEETTE
T ss_pred             CCcceeecccccceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEECCCEEEEEEEEECCCCe
Confidence              0  0    02233443321110   0000          111112235667899999999999999999999999999


Q ss_pred             EEEEEEEEEcCCCCChHHH-HHHhccccCCchhhHHHHHHHHhhcccCCCCCCCCCCCCcChHHHHHHHHHHHHhc
Q 039874          307 CKVVFDYFLDGSLKDDKAF-IEQSLKDSEQVQMEDIILCEGVQRGLESPAYCSGRYAPSVEQTMYHFHSLLHCNLT  381 (382)
Q Consensus       307 t~v~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~ED~~i~e~~q~~l~s~~~~~g~~~~~~E~~i~~f~~~~~~~l~  381 (382)
                      |++++.+|+.++..+..++ .+.+.+++.+|..||.+|+|++|+|++|+++.+|+|++.+|.++.+||+|+++.|.
T Consensus       323 t~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ED~~l~e~~Q~G~~s~~y~~G~~s~~~E~~v~~F~~w~~~~l~  398 (409)
T 3n0q_A          323 TEVTTKWLVHKDAVEGVDYDLQRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPYSPTQESGVLQFVEWYLSTLK  398 (409)
T ss_dssp             EEEEEEEEEETTCCBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCCTTTSHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCccHhHHHHHHHHHHHHH
Confidence            9999999998877643332 34555677889999999999999999999999999998899999999999999875
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Back     alignment and structure
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A* Back     alignment and structure
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Back     alignment and structure
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Back     alignment and structure
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Back     alignment and structure
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Back     alignment and structure
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Back     alignment and structure
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Back     alignment and structure
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Back     alignment and structure
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Back     alignment and structure
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Back     alignment and structure
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Back     alignment and structure
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Back     alignment and structure
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Back     alignment and structure
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Back     alignment and structure
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Back     alignment and structure
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B* Back     alignment and structure
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Back     alignment and structure
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Back     alignment and structure
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Back     alignment and structure
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Back     alignment and structure
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Back     alignment and structure
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1 Back     alignment and structure
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C* Back     alignment and structure
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B* Back     alignment and structure
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species} Back     alignment and structure
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus} Back     alignment and structure
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E* Back     alignment and structure
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ... Back     alignment and structure
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A Back     alignment and structure
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C* Back     alignment and structure
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A Back     alignment and structure
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D* Back     alignment and structure
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 382
d1ulia1154 b.33.1.2 (A:17-170) Biphenyl dioxygenase large sub 3e-27
d2b1xa1162 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alp 3e-25
d2bmoa1150 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha 3e-24
d1z01a1148 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-m 6e-19
d2de6a1142 b.33.1.2 (A:1-142) Terminal oxygenase component of 2e-17
d1vm9a_109 b.33.1.1 (A:) Toluene-4-monooxygenase system prote 7e-12
d1fqta_109 b.33.1.1 (A:) Rieske-type ferredoxin associated wi 8e-12
d1rfsa_127 b.33.1.1 (A:) ISP subunit from chloroplast cytochr 6e-11
d2e74d1134 b.33.1.1 (D:46-179) ISP subunit from the cytochrom 1e-09
d3c0da1108 b.33.1.3 (A:4-111) NADH-nitrite reductase small su 8e-07
d1g8kb_133 b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc 2e-06
d2jo6a1108 b.33.1.3 (A:1-108) NADH-nitrite reductase small su 5e-05
d2jzaa1122 b.33.1.3 (A:1-122) NADH-nitrite reductase small su 1e-04
d1nyka_156 b.33.1.1 (A:) Soluble Rieske protein {Thermus ther 1e-04
d2b1xa2279 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase 2e-04
d2bmoa2287 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alp 0.001
d1jm1a_202 b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon S 0.002
>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Length = 154 Back     information, alignment and structure

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

 Score =  103 bits (257), Expect = 3e-27
 Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 2/140 (1%)

Query: 28  EKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDD 87
           E+        YTD +    EL R+F RSW ++G+  Q+    DF +  +GE   +V R  
Sbjct: 12  ERTGRLDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQK 71

Query: 88  NGKIHAFHNVCRHHASILAT-GSGKKSWFVCPYHGWTYGLDGTLLKA-TRITGIKDFNVK 145
           NG+I  F N CRH    +     G    F C YHGW Y   G L+              +
Sbjct: 72  NGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKE 131

Query: 146 EFGLVPLEVATWGPFVLLNM 165
           ++G +   V T+   +  N 
Sbjct: 132 DWGPLQARVETYKGLIFANW 151
>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Length = 162 Back     information, alignment and structure
>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Length = 150 Back     information, alignment and structure
>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 148 Back     information, alignment and structure
>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Length = 142 Back     information, alignment and structure
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109 Back     information, alignment and structure
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Length = 109 Back     information, alignment and structure
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127 Back     information, alignment and structure
>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Length = 134 Back     information, alignment and structure
>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Length = 108 Back     information, alignment and structure
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133 Back     information, alignment and structure
>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Length = 108 Back     information, alignment and structure
>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Length = 122 Back     information, alignment and structure
>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156 Back     information, alignment and structure
>d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Length = 279 Back     information, alignment and structure
>d2bmoa2 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Length = 287 Back     information, alignment and structure
>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 202 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query382
d1ulia1154 Biphenyl dioxygenase large subunit BphA1, N-termin 100.0
d2b1xa1162 Naphthalene 1,2-dioxygenase alpha subunit, N-domai 100.0
d2bmoa1150 Nitrobenzene dioxygenase alpha subunit, NBDO-alpha 100.0
d2de6a1142 Terminal oxygenase component of carbazole CarAa {J 99.97
d1z01a1148 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen 99.97
d1vm9a_109 Toluene-4-monooxygenase system protein C, TmoC {Ps 99.93
d2jzaa1122 NADH-nitrite reductase small subunit NirD {Erwinia 99.93
d2jo6a1108 NADH-nitrite reductase small subunit NirD {Escheri 99.92
d1fqta_109 Rieske-type ferredoxin associated with biphenyl di 99.91
d3c0da1108 NADH-nitrite reductase small subunit NirD {Vibrio 99.91
d1rfsa_127 ISP subunit from chloroplast cytochrome bf complex 99.78
d1g8kb_133 Arsenite oxidase Rieske subunit {Alcaligenes faeca 99.73
d2b1xa2279 Naphthalene 1,2-dioxygenase alpha subunit, C-domai 99.73
d2e74d1134 ISP subunit from the cytochrome b6f complex, solub 99.72
d2bmoa2287 Nitrobenzene dioxygenase alpha subunit, NBDO-alpha 99.72
d1ulia2281 Biphenyl dioxygenase large subunit BphA1, C-termin 99.66
d1wqla2279 Large subunit of cumene dioxygenase cumA1 {Pseudom 99.64
d1nyka_156 Soluble Rieske protein {Thermus thermophilus [TaxI 99.56
d3cx5e1129 ISP subunit of the mitochondrial cytochrome bc1-co 99.39
d1riea_127 ISP subunit of the mitochondrial cytochrome bc1-co 99.32
d1z01a2279 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen 99.01
d1jm1a_202 Rieske protein II (SoxF) {Archaeon Sulfolobus acid 98.96
d2de6a2242 Terminal oxygenase component of carbazole CarAa {J 96.94
>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Back     information, alignment and structure
class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=100.00  E-value=4.1e-43  Score=296.88  Aligned_cols=141  Identities=29%  Similarity=0.588  Sum_probs=130.8

Q ss_pred             ccCCCCCCCccCCHHHHHHHHHhccccCCeeeeecCCcCCCCCeEEEEECCeeEEEEEcCCCcEEEEeccCcCCCCcccc
Q 039874           28 EKALTPPSSWYTDPSFLALELHRVFYRSWQVVGYTDQLKDPQDFFSGRIGEVEFVVCRDDNGKIHAFHNVCRHHASILAT  107 (382)
Q Consensus        28 ~~~~~lp~~~Y~~~~~~~~E~~~if~~~W~~v~~~~~l~~~g~~~~~~~~~~~~vv~r~~~g~~~a~~n~C~Hrg~~L~~  107 (382)
                      +++.+||+++|+|+++|++|+++||++.|++||+++||+++|++++.++++++|+|+|+++|+++||.|+|||||++|..
T Consensus        12 ~~~~~l~~~~Y~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~ilv~R~~~g~i~af~N~C~HRG~~L~~   91 (154)
T d1ulia1          12 ERTGRLDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICR   91 (154)
T ss_dssp             TTTTEECGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCC
T ss_pred             hhcCcCCHHHcCCHHHHHHHHHHHhccCCEEEEEhhhCCCCcceeeeecCCcceeEEeecccceeeeecccccCCceeee
Confidence            44667999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             C-CCCcceEEccCCCceecCCCceeecccccC-CCCCCccCCCCcceeeEEECcEEEEEcCCC
Q 039874          108 G-SGKKSWFVCPYHGWTYGLDGTLLKATRITG-IKDFNVKEFGLVPLEVATWGPFVLLNMGKE  168 (382)
Q Consensus       108 g-~~~~~~i~CpyHgw~f~~~G~~~~~p~~~~-~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~  168 (382)
                      + .++++.|+||||||+|+++|+|+++|.... .+.+++++.+|++++|++++|+|||+++++
T Consensus        92 ~~~g~~~~l~CpYHgW~f~~~G~~~~iP~~~~~~~~~~~~~~~L~~~~v~~~~G~Ifv~~d~D  154 (154)
T d1ulia1          92 ADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDAD  154 (154)
T ss_dssp             SSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTT
T ss_pred             cCCCccceEEeeeceeEEecCCccccCCcccccCCCCChHHCCCeEEeEEEECCEEEEEeCCC
Confidence            4 467788999999999999999999997654 467888889999999999999999999864
>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Back     information, alignment and structure
>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Back     information, alignment and structure
>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Back     information, alignment and structure
>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Back     information, alignment and structure
>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Back     information, alignment and structure
>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Back     information, alignment and structure
>d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Back     information, alignment and structure
>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Back     information, alignment and structure
>d2bmoa2 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Back     information, alignment and structure
>d1ulia2 d.129.3.3 (A:171-451) Biphenyl dioxygenase large subunit BphA1, C-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Back     information, alignment and structure
>d1wqla2 d.129.3.3 (A:181-459) Large subunit of cumene dioxygenase cumA1 {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Back     information, alignment and structure