Citrus Sinensis ID: 040310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MEYYLNENFGFVKQKKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRANLAVNLFFRRERLIEPEILNNQHSDGLIKAKMLTNQHEPKNPIGQDQLSLTKKVNKPKASDKRKRKVMNQETTHRITWFGTK
Secondary Structure (PSIPRED)
cccHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHcccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccccccccHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccHcHHHHHcccccccccHHHHHHHHccccccEEEEcccc
Coil and Loop (DISEMBL)
meyylnenfgfvkqkKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRANLAVNLFFrrerliepeilnnqhsdGLIKAKMltnqhepknpigqdqlsltkkvnkpkasdkrKRKVMNQETTHRITWFGTK
Flexible Loop (DISEMBL)
meyylnenfgfvkqkkseealeRWRIlsgfvknrkrrFRFTAnlakrseaeairrANLAVNLFFRRERLIEPEILNNQHSDGLIKAKMLTNQHepknpigqdqlsltkkvnkpkasdkrkrkvmnqetthritwfgtk
Low Complexity Region (SEG)
MEYYLNENFGFVKQKKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRANLAVNLFFRRERLIEPEILNNQHSDGLIKAKMLTNQHEPKNPIGQDQLSLTKKVNKPKASDKRKRKVMNQETTHRITWFGTK
Disordered region (IsUnstruct)
***YLNENFGFVKQ***EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRANLAVNLFFRRERLIEPEILNN*************************************************************
Disordered Region (DISOPRED)
**YYLNENFG*************WRILSGFVKNRKRRFRFTAN****************VNLFFRRERLIEPEILNN****************EPKNPIGQDQLSLTKKVNK***********MNQETTHRITWFGT*
Disordered Region (DISEMBL)
MEYYLNENFGFVKQKKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRANLAVNLFFRRERLIEPEILNNQHSDGLIKAKMLTNQHEPKNPIGQDQLSLT*******************ETTHRITWFGTK
Disordered Region (DISPRO)
*EY**NENFGFVKQKKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRANLAVNLFFRRERLIEPEILNNQHSDGLIKAKMLTNQHEPKNPIGQDQLSLTKKV*****SDKRKRK**NQETTHRITWFGTK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEYYLNENFGFVKQKKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRANLAVNLFFRRERLIEPEILNNQHSDGLIKAKMLTNQHEPKNPIGQDQLSLTKKVNKPKASDKRKRKVMNQETTHRITWFGTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q37145	1020	Calcium-transporting ATPa	yes	no	0.413	0.055	0.758	1e-17
Q2QMX9	1020	Calcium-transporting ATPa	yes	no	0.413	0.055	0.724	4e-16
O81108	1014	Calcium-transporting ATPa	no	no	0.413	0.056	0.666	1e-15
O64806	1015	Putative calcium-transpor	no	no	0.413	0.056	0.631	3e-14
Q2QY12	1039	Probable calcium-transpor	no	no	0.775	0.102	0.338	7e-07
Q8RUN1	1043	Calcium-transporting ATPa	no	no	0.485	0.064	0.438	2e-06
Q2RAS0	1017	Probable calcium-transpor	no	no	0.615	0.083	0.344	3e-06
Q9M2L4	1025	Putative calcium-transpor	no	no	0.362	0.048	0.46	6e-05

>sp|Q37145|ACA1_ARATH Calcium-transporting ATPase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=3

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLNENFG VK K S +EAL+RWR L   VKN KRRFRFTANL+KRSEAEAIRR+N
Sbjct: 1  MESYLNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSN 58

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 8

>sp|Q2QMX9|ACA1_ORYSJ Calcium-transporting ATPase 1, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0586600 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YL ENFG VK K S EEAL RWR L G VKN KRRFRFTANL KR EA+AI+ AN
Sbjct: 1  MESYLEENFGGVKAKNSSEEALRRWRKLCGVVKNPKRRFRFTANLDKRGEAQAIKHAN 58

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|O81108|ACA2_ARATH Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 42/57 (73%)

Query: 1  MEYYLNENFGFVKQKKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLNENF    +  SEE LE+WR L G VKN KRRFRFTANL+KR EA A+RR N
Sbjct: 1  MESYLNENFDVKAKHSSEEVLEKWRNLCGVVKNPKRRFRFTANLSKRYEAAAMRRTN 57

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol into the endoplasmic reticulum.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|O64806|ACA7_ARATH Putative calcium-transporting ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=ACA7 PE=3 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 40/57 (70%)

Query: 1  MEYYLNENFGFVKQKKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLN NF    +  SEE LE+WR L   VKN KRRFRFTANL+KR EA A+RR N
Sbjct: 1  MESYLNSNFDVKAKHSSEEVLEKWRNLCSVVKNPKRRFRFTANLSKRYEAAAMRRTN 57

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q2QY12|ACA4_ORYSJ Probable calcium-transporting ATPase 4, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0136900 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 14/121 (11%)

Query: 1   MEYYLNENFGFVKQKKSEEALERWRILSG-FVKNRKRRFRFTANLAKRSEAEAIRRAN-- 57
           ++ YL ENF    +  SEEA  RWR   G  VKNR+RRFR+  +L +RS  +A  R+   
Sbjct: 4   LDRYLQENFDVPAKNPSEEAQRRWRQAVGTIVKNRRRRFRWVPDLERRSLDKAKVRSTQE 63

Query: 58  -LAVNLFFRRERLIEPEILNNQHSDGLIKA--KMLTNQHEPKNPIGQDQLSLTKKVNKPK 114
            + V L+ ++  LI         SDG  K   K+  +  +    I  D+L+L    +  K
Sbjct: 64  KIRVALYVQQAALI--------FSDGAKKKEYKLTGDIIKAGYAINPDELALITSKHDSK 115

Query: 115 A 115
           A
Sbjct: 116 A 116

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q8RUN1|ACA3_ORYSJ Calcium-transporting ATPase 3, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os01g0939100 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 1  MEYYLNENFGFVKQKKSEEALERWRILSG-FVKNRKRRFRFTANLAKRSEAEAIRRA--- 56
          ME+   ++F    +  SEEA  RWR   G  VKNR+RRFR   +L KRS+AE  RR    
Sbjct: 9  MEFL--KSFEVPAKNPSEEAQRRWRDAVGTLVKNRRRRFRMVPDLDKRSQAETQRRKIQE 66

Query: 57 NLAVNLFFRRERL 69
           L V LF ++  L
Sbjct: 67 KLRVALFVQKAAL 79

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q2RAS0|ACA5_ORYSJ Probable calcium-transporting ATPase 5, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os11g0140400 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 8/93 (8%)

Query: 1  MEYYLNENFGFVKQKKSEEALERWRILSG-FVKNRKRRFRFTANLAKRSEAEAIRRAN-- 57
          ++ YL E+F    +  SEEA  RWR   G  VKNR+RRFR+  +L +RS  +A  R+   
Sbjct: 4  LDRYLQEHFDVPAKNPSEEAQRRWRQAVGTIVKNRRRRFRWVPDLDRRSLDKAKVRSTQE 63

Query: 58 -LAVNLFFRRERLI----EPEILNNQHSDGLIK 85
           + V L+ ++  LI    E  ++ ++H    +K
Sbjct: 64 KIRVALYVQQAALIFSDDELALITSKHDSKALK 96

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell, into the endoplasmic reticulum, or into organelles.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q9M2L4|ACA11_ARATH Putative calcium-transporting ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=ACA11 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 29/50 (58%)

Query: 5  LNENFGFVKQKKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIR 54
          L ++F    +  S EA +RWR   G VKNR RRFR  +NL K +E E  R
Sbjct: 4  LLKDFEVASKNPSLEARQRWRSSVGLVKNRARRFRMISNLDKLAENEKKR 53

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
224127276	1020	predicted protein [Populus trichocarpa]	0.413	0.055	0.758	5e-16
289540885	1019	calcium ATPase [Trifolium repens]	0.413	0.055	0.758	6e-16
6693032	1034	T22C5.23 [Arabidopsis thaliana]	0.413	0.055	0.758	8e-16
516118	1020	envelope Ca2+-ATPase [Arabidopsis thalia	0.413	0.055	0.758	8e-16
509810	1020	envelope Ca2+-ATPase [Arabidopsis thalia	0.413	0.055	0.758	8e-16
18396484	946	autoinhibited Ca2+-ATPase 1 [Arabidopsis	0.413	0.060	0.758	8e-16
297851218	1020	autoinhibited Ca2+-ATPase 1 [Arabidopsis	0.413	0.055	0.758	8e-16
493622	946	chloroplast envelope Ca2+-ATPase precurs	0.413	0.060	0.758	8e-16
471089	946	chloroplast envelope Ca2+-ATPase precurs	0.413	0.060	0.758	8e-16
30690083	1020	autoinhibited Ca2+-ATPase 1 [Arabidopsis	0.413	0.055	0.758	8e-16

>gi|224127276|ref|XP_002320033.1| predicted protein [Populus trichocarpa] gi|222860806|gb|EEE98348.1| predicted protein [Populus trichocarpa]

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLNENFG VK K S +EAL+RWR L   VKNRKRRFRFTANL+KR EAEAIRR+N
Sbjct: 1  MENYLNENFGDVKAKNSSDEALQRWRKLCWLVKNRKRRFRFTANLSKRFEAEAIRRSN 58

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289540885|gb|ADD09562.1| calcium ATPase [Trifolium repens]

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLN+NFG VK K S EEAL+RWR L   VKNRKRRFRFTANL+KR EAEAIRR+N
Sbjct: 1  MESYLNDNFGDVKPKNSSEEALQRWRKLCWVVKNRKRRFRFTANLSKRFEAEAIRRSN 58

Source: Trifolium repens

Species: Trifolium repens

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6693032|gb|AAF24958.1|AC012375_21 T22C5.23 [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLNENFG VK K S +EAL+RWR L   VKN KRRFRFTANL+KRSEAEAIRR+N
Sbjct: 1  MESYLNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSN 58

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|516118|gb|AAD10212.1| envelope Ca2+-ATPase [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLNENFG VK K S +EAL+RWR L   VKN KRRFRFTANL+KRSEAEAIRR+N
Sbjct: 1  MESYLNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSN 58

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|509810|gb|AAD10211.1| envelope Ca2+-ATPase [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLNENFG VK K S +EAL+RWR L   VKN KRRFRFTANL+KRSEAEAIRR+N
Sbjct: 1  MESYLNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSN 58

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396484|ref|NP_564295.1| autoinhibited Ca2+-ATPase 1 [Arabidopsis thaliana] gi|332192758|gb|AEE30879.1| autoinhibited Ca2+-ATPase 1 [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLNENFG VK K S +EAL+RWR L   VKN KRRFRFTANL+KRSEAEAIRR+N
Sbjct: 1  MESYLNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSN 58

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851218|ref|XP_002893490.1| autoinhibited Ca2+-ATPase 1 [Arabidopsis lyrata subsp. lyrata] gi|297339332|gb|EFH69749.1| autoinhibited Ca2+-ATPase 1 [Arabidopsis lyrata subsp. lyrata]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLNENFG VK K S +EAL+RWR L   VKN KRRFRFTANL+KRSEAEAIRR+N
Sbjct: 1  MESYLNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSN 58

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|493622|dbj|BAA03090.1| chloroplast envelope Ca2+-ATPase precursor [Arabidopsis thaliana] gi|4176435|emb|CAA49559.1| envelope Ca2+-ATPase [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLNENFG VK K S +EAL+RWR L   VKN KRRFRFTANL+KRSEAEAIRR+N
Sbjct: 1  MESYLNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSN 58

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|471089|dbj|BAA03091.1| chloroplast envelope Ca2+-ATPase precursor [Arabidopsis thaliana] gi|4165448|emb|CAA49558.1| envelope Ca2+-ATPase [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLNENFG VK K S +EAL+RWR L   VKN KRRFRFTANL+KRSEAEAIRR+N
Sbjct: 1  MESYLNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSN 58

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690083|ref|NP_849716.1| autoinhibited Ca2+-ATPase 1 [Arabidopsis thaliana] gi|30316378|sp|Q37145.3|ACA1_ARATH RecName: Full=Calcium-transporting ATPase 1, chloroplastic; AltName: Full=Ca(2+)-ATPase isoform 1; AltName: Full=Plastid envelope ATPase 1; Flags: Precursor gi|12320888|gb|AAG50579.1|AC079280_10 envelope Ca2+-ATPase [Arabidopsis thaliana] gi|332192757|gb|AEE30878.1| autoinhibited Ca2+-ATPase 1 [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 1  MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
          ME YLNENFG VK K S +EAL+RWR L   VKN KRRFRFTANL+KRSEAEAIRR+N
Sbjct: 1  MESYLNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSN 58

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:2029794	1020	ACA1 "autoinhibited Ca2+-ATPas	0.413	0.055	0.758	1.9e-15
TAIR|locus:2120096	1014	ACA2 "calcium ATPase 2" [Arabi	0.413	0.056	0.666	4.2e-13
TAIR|locus:2059201	1015	ACA7 "auto-regulated Ca2+-ATPa	0.413	0.056	0.631	6.3e-12

TAIR|locus:2029794 ACA1 "autoinhibited Ca2+-ATPase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 44/58 (75%), Positives = 48/58 (82%)

Query:     1 MEYYLNENFGFVKQKKS-EEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
             ME YLNENFG VK K S +EAL+RWR L   VKN KRRFRFTANL+KRSEAEAIRR+N
Sbjct:     1 MESYLNENFGDVKPKNSSDEALQRWRKLCWIVKNPKRRFRFTANLSKRSEAEAIRRSN 58

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA;ISS;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0005516 "calmodulin binding" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006882 "cellular zinc ion homeostasis" evidence=RCA

GO:0009624 "response to nematode" evidence=RCA

GO:0009706 "chloroplast inner membrane" evidence=IDA;TAS

GO:0005262 "calcium channel activity" evidence=TAS

TAIR|locus:2120096 ACA2 "calcium ATPase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 38/57 (66%), Positives = 42/57 (73%)

Query:     1 MEYYLNENFGFVKQKKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
             ME YLNENF    +  SEE LE+WR L G VKN KRRFRFTANL+KR EA A+RR N
Sbjct:     1 MESYLNENFDVKAKHSSEEVLEKWRNLCGVVKNPKRRFRFTANLSKRYEAAAMRRTN 57

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA;ISS;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0006810 "transport" evidence=IDA

GO:0005516 "calmodulin binding" evidence=IDA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0015085 "calcium ion transmembrane transporter activity" evidence=IDA

TAIR|locus:2059201 ACA7 "auto-regulated Ca2+-ATPase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 36/57 (63%), Positives = 40/57 (70%)

Query:     1 MEYYLNENFGFVKQKKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN 57
             ME YLN NF    +  SEE LE+WR L   VKN KRRFRFTANL+KR EA A+RR N
Sbjct:     1 MESYLNSNFDVKAKHSSEEVLEKWRNLCSVVKNPKRRFRFTANLSKRYEAAAMRRTN 57


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      138       138   0.00091  102 3  11 22  0.42    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  558 (59 KB)
  Total size of DFA:  127 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.70u 0.23s 15.93t   Elapsed:  00:00:01
  Total cpu time:  15.70u 0.23s 15.93t   Elapsed:  00:00:01
  Start:  Fri May 10 13:31:51 2013   End:  Fri May 10 13:31:52 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006882 "cellular zinc ion homeostasis" evidence=RCA

GO:0009624 "response to nematode" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2QMX9	ACA1_ORYSJ	3, ., 6, ., 3, ., 8	0.7241	0.4130	0.0558	yes	no
Q37145	ACA1_ARATH	3, ., 6, ., 3, ., 8	0.7586	0.4130	0.0558	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	138
pfam12515	47	pfam12515, CaATP_NAI, Ca2+-ATPase N terminal autoi	5e-13

>gnl|CDD|204949 pfam12515, CaATP_NAI, Ca2+-ATPase N terminal autoinhibitory domain

 Score = 58.9 bits (143), Expect = 5e-13
 Identities = 27/47 (57%), Positives = 33/47 (70%)

Query: 4  YLNENFGFVKQKKSEEALERWRILSGFVKNRKRRFRFTANLAKRSEA 50
          YL++ F    +  SEEAL RWR   G VKN +RRFR+TA+LAKR EA
Sbjct: 1  YLDDPFDIPAKNSSEEALRRWRQAVGLVKNARRRFRYTADLAKRCEA 47

This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00689, pfam00122, pfam00702, pfam00690. There is a conserved RRFR sequence motif. There are two completely conserved residues (F and W) that may be functionally important. This family is the N terminal autoinhibitory domain of an endosomal Ca2+-ATPase. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
PF12515	47	CaATP_NAI: Ca2+-ATPase N terminal autoinhibitory d	99.82
KOG0204	1034	consensus Calcium transporting ATPase [Inorganic i	97.73

>PF12515 CaATP_NAI: Ca2+-ATPase N terminal autoinhibitory domain; InterPro: IPR024750 This entry represents the N-terminal autoinhibitory calmodulin-binding domain characteristic of certain calcium-transporting ATPases []

Probab=99.82  E-value=4.9e-21  Score=125.39  Aligned_cols=45  Identities=60%  Similarity=1.026  Sum_probs=43.1

Q ss_pred             ccccccCCCCCC-CcHHHHHHHHHHhhhhcccccccchhhhhhhhHH
Q 040310            4 YLNENFGFVKQK-KSEEALERWRILSGFVKNRKRRFRFTANLAKRSE   49 (138)
Q Consensus         4 ~l~e~F~~I~~K-~S~EaLrRWR~Aa~lVlN~sRRFRytadL~Kr~e   49 (138)
                      |++++|+ |++| +|+|+|+|||+|++||+||+||||||+||+|+++
T Consensus         1 yl~~~Fd-i~~Kn~s~e~l~rWR~a~~lv~N~~RRFR~~~dL~k~~e   46 (47)
T PF12515_consen    1 YLDDNFD-IPAKNSSEEALRRWRQAVGLVKNARRRFRYTADLKKREE   46 (47)
T ss_pred             CCccccC-CCCCCCCHHHHHHHHHHhHHhccccceeeecccHhhHhc
Confidence            6889999 9999 9999999999999999999999999999999885

This domain binds calmodulin in a calcium-dependent fashion and has a conserved RRFR sequence motif. There are two completely conserved residues (F and W) that may be functionally important.; GO: 0005516 calmodulin binding

>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]

Probab=97.73  E-value=2.2e-05  Score=75.90  Aligned_cols=64  Identities=41%  Similarity=0.528  Sum_probs=54.1

Q ss_pred             cccccccCCCCCC-CcHHHHHHHHHHhhhhcccccccchhhhhhhhHHHHHHHHHH-------HHhHHHHhhhh
Q 040310            3 YYLNENFGFVKQK-KSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRAN-------LAVNLFFRRER   68 (138)
Q Consensus         3 ~~l~e~F~~I~~K-~S~EaLrRWR~Aa~lVlN~sRRFRytadL~Kr~e~e~kRrki-------~~~~~f~~a~~   68 (138)
                      ++++++|. ...+ +|.+++++||.| .+++|++|||||+++|++..+..++|+++       .+..+|++++.
T Consensus         1 s~~~~~~~-~~~~n~~~~~~~~~~~a-~~~~~~~~~~~~~~~l~~~~~~~~~r~~~r~~~~~~~a~~~~~~~~~   72 (1034)
T KOG0204|consen    1 SLLDKDFV-VSMKNSSIEALQRWRLA-YIVLEASRRFRFGASLKKLRELMEPRRKIRSAVLVSKAAALFIDAGS   72 (1034)
T ss_pred             CCcccccc-cccccchhhhhhhhhhh-hhhcccchhhccccCHHHHHHHHHHHhhhhhhhcccchhhhhhcccc
Confidence            35678887 7777 999999999966 59999999999999999999999999877       55667777753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
4aqr_D	57	Calcium-transporting ATPase 8, plasma membrane-TY;	99.75
2l1w_B	26	Vacuolar calcium ATPase BCA1 peptide; calmodulin,	98.92

>4aqr_D Calcium-transporting ATPase 8, plasma membrane-TY; Ca-binding protein-hydrolase complex, plasma-membrane calciu; 1.95A {Arabidopsis thaliana}

Probab=99.75  E-value=4.2e-19  Score=119.39  Aligned_cols=51  Identities=31%  Similarity=0.471  Sum_probs=45.3

Q ss_pred             CcHHHHHHHHHHhhhhcccccccchhhhhhhhHHHHHHHHHHHHhHHHHhhh
Q 040310           16 KSEEALERWRILSGFVKNRKRRFRFTANLAKRSEAEAIRRANLAVNLFFRRE   67 (138)
Q Consensus        16 ~S~EaLrRWR~Aa~lVlN~sRRFRytadL~Kr~e~e~kRrki~~~~~f~~a~   67 (138)
                      +|+|+|+|||+|+ ||+||+||||||+||+|++++++++++|+...+.++|+
T Consensus         1 ~s~e~L~rWR~a~-lVlNa~RRFR~t~dL~K~~e~~~~~rkiR~~~~v~rAa   51 (57)
T 4aqr_D            1 SSIERLQQWRKAA-LVLNASRRFRYTLDLKKEQETREMRQKIRSHAHALLAA   51 (57)
T ss_dssp             CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHH-HHhchHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999995 99999999999999999999999999996666655553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00