Citrus Sinensis ID: 040446

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
MVGWQRHLQPVLCQVGKILGHNYTASANFYSSRLQSSLLHGQLLHIQNLWTSPSTNISRPLYQYLQQLGISSTRKLLANSSDETPVSSPLLAIESGKADDQKVVSKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTAEEEAQIARLRVHKFRKLTKREQRLVPHQLIETTPIWNRRGKSSNREPSMNA
ccccHHHHHHHHHHHHHcccccccccccccHHHcccccccccccccccccccccccccccHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccHHEEEEEEEEEcccHHHHHHHHHHHcccEHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHEEEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEEEEccHHHHHHHHHHcccccHHcccccccccccccEcccccEccccccccccccccc
mvgwqrhlqPVLCQVGkilghnytaSANFYSSRLQSSLLHGQLLhiqnlwtspstnisrPLYQYLQQLGISSTRKllanssdetpvsspllaiesgkaddqkvvskpAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARAnathnhgldpdrLLVAEAFVGKGFFKKRVSYHskgrsgikvrpecrLTVVVRELTAEEEAQIARLRVHKFRKLTKReqrlvphqliettpiwnrrgkssnrepsmna
MVGWQRHLQPVLCQVGKILGHNYTASANFYSSRLQSSLLHGQLLHIQNLWTSPSTNISRPLYQYLQQLGISSTRKLLANSSDETPVSSPLLAIEsgkaddqkvvsKPAKVQavlkgikqspkkiNLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARanathnhgldPDRLLVAEAFVGKGFFKKRvsyhskgrsgikvrpecrlTVVVReltaeeeaqIARLRvhkfrkltkreqrlvphqliettpiwnrrgkssnrepsmna
MVGWQRHLQPVLCQVGKILGHNYTASANFYssrlqssllhgqllhIQNLWTSPSTNISRPLYQYLQQLGISSTRKLLANSSDETPVSSPLLAIESGKADDQKVVSKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTAEEEAQIARLRVHKFRKLTKREQRLVPHQLIETTPIWNRRGKSSNREPSMNA
***WQRHLQPVLCQVGKILGHNYTASANFYSSRLQSSLLHGQLLHIQNLWTSPSTNISRPLYQYLQQLGIS****************************************AVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTAEEEAQIARLRVHKFRKLTKREQRLVPHQLIETTPIW***************
*******LQPVLCQVGKILG************************H***LWTSPSTNISRPLYQYLQQLGI******************************************VLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVR************************EQRLVPHQLIETTPI****************
MVGWQRHLQPVLCQVGKILGHNYTASANFYSSRLQSSLLHGQLLHIQNLWTSPSTNISRPLYQYLQQLGISSTRKL**********SSPLLAIESG**************QAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTAEEEAQIARLRVHKFRKLTKREQRLVPHQLIETTPIWNRR************
*VGWQRHLQPVLCQVGKILGHNYTAS*NFYS*RLQSSLLHGQLLHIQNLWTSPSTNISRPLYQYLQQLGISS*****ANSSD*******************KVVSKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTAEEEAQIARLRVHKFRKLTKREQRLVPHQLIETTPIW***************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVGWQRHLQPVLCQVGKILGHNYTASANFYSSRLQSSLLHGQLLHIQNLWTSPSTNISRPLYQYLQQLGISSTRKLLANSSDETPVSSPLLAIESGKADDQKVVSKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTAEEEAQIARLRVHKFRKLTKREQRLVPHQLIETTPIWNRRGKSSNREPSMNA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query270 2.2.26 [Sep-21-2011]
A6U864129 50S ribosomal protein L22 yes no 0.470 0.984 0.476 4e-22
Q92QG5129 50S ribosomal protein L22 yes no 0.470 0.984 0.476 4e-22
B2IK67129 50S ribosomal protein L22 yes no 0.403 0.844 0.504 2e-21
Q2K9L1129 50S ribosomal protein L22 yes no 0.470 0.984 0.460 7e-21
Q3SSW1128 50S ribosomal protein L22 yes no 0.425 0.898 0.452 3e-20
B8ELF8128 50S ribosomal protein L22 yes no 0.437 0.921 0.457 3e-20
Q8UE23129 50S ribosomal protein L22 yes no 0.437 0.914 0.457 3e-20
Q1QN25128 50S ribosomal protein L22 yes no 0.425 0.898 0.452 4e-20
Q07KM3128 50S ribosomal protein L22 yes no 0.425 0.898 0.452 4e-20
Q98N52129 50S ribosomal protein L22 yes no 0.425 0.891 0.469 7e-20
>sp|A6U864|RL22_SINMW 50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) GN=rplV PE=3 SV=1 Back     alignment and function desciption
 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 1/128 (0%)

Query: 96  GKADDQKVVSKPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVY 155
           GKA  ++ + K  + QAV + I+ SP+K+NLVAAL+RG +V+ AL +L+ + KR A TV 
Sbjct: 2   GKAKAERRL-KDNEAQAVARTIRVSPQKLNLVAALIRGKKVDRALAELEFSRKRIAGTVR 60

Query: 156 QVIHSARANATHNHGLDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVR 215
           + + SA ANA +NH LD D L+VAEAFVGK    KR     +GR+    +P   LT+VVR
Sbjct: 61  KTLESAIANAENNHDLDVDSLIVAEAFVGKSIVMKRFHARGRGRASRVEKPFAHLTIVVR 120

Query: 216 ELTAEEEA 223
           E+ A+ EA
Sbjct: 121 EVEAKGEA 128
The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
Sinorhizobium medicae (strain WSM419) (taxid: 366394)
>sp|Q92QG5|RL22_RHIME 50S ribosomal protein L22 OS=Rhizobium meliloti (strain 1021) GN=rplV PE=3 SV=1 Back     alignment and function description
>sp|B2IK67|RL22_BEII9 50S ribosomal protein L22 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplV PE=3 SV=1 Back     alignment and function description
>sp|Q2K9L1|RL22_RHIEC 50S ribosomal protein L22 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplV PE=3 SV=1 Back     alignment and function description
>sp|Q3SSW1|RL22_NITWN 50S ribosomal protein L22 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplV PE=3 SV=1 Back     alignment and function description
>sp|B8ELF8|RL22_METSB 50S ribosomal protein L22 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplV PE=3 SV=1 Back     alignment and function description
>sp|Q8UE23|RL22_AGRT5 50S ribosomal protein L22 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplV PE=3 SV=1 Back     alignment and function description
>sp|Q1QN25|RL22_NITHX 50S ribosomal protein L22 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplV PE=3 SV=1 Back     alignment and function description
>sp|Q07KM3|RL22_RHOP5 50S ribosomal protein L22 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplV PE=3 SV=1 Back     alignment and function description
>sp|Q98N52|RL22_RHILO 50S ribosomal protein L22 OS=Rhizobium loti (strain MAFF303099) GN=rplV PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
225439305271 PREDICTED: 50S ribosomal protein L22, ch 0.955 0.952 0.759 1e-111
255566195278 50S ribosomal protein L22, putative [Ric 0.988 0.960 0.718 1e-102
449443420271 PREDICTED: 50S ribosomal protein L22, ch 0.959 0.955 0.655 5e-92
388493390273 unknown [Lotus japonicus] 0.966 0.956 0.628 3e-89
18417177271 Ribosomal protein L22p/L17e family prote 0.959 0.955 0.639 7e-89
297847626270 ribosomal protein L22 family protein [Ar 0.929 0.929 0.643 7e-87
357439103326 50S ribosomal protein L22 [Medicago trun 0.955 0.791 0.638 3e-85
388492452285 unknown [Medicago truncatula] 0.955 0.905 0.638 5e-85
22330190269 Ribosomal protein L.2/L17e family protei 0.959 0.962 0.642 2e-84
224138266193 predicted protein [Populus trichocarpa] 0.703 0.984 0.809 2e-84
>gi|225439305|ref|XP_002267832.1| PREDICTED: 50S ribosomal protein L22, chloroplastic [Vitis vinifera] gi|296089316|emb|CBI39088.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/262 (75%), Positives = 226/262 (86%), Gaps = 4/262 (1%)

Query: 1   MVGWQRHLQPVLCQVGKILGHNYTASANFYSSRLQSSLLHGQLLHIQNLWTSPSTNISRP 60
           MVGWQRHL+ V  Q+GK + HNY  SANF  SRL+SS L G+L ++Q LW  PS  I RP
Sbjct: 1   MVGWQRHLRNVFTQIGKRVEHNYNVSANFSCSRLESSPLVGELPYLQRLWKLPSATIPRP 60

Query: 61  LYQYLQQLGISSTRKLLANSSDETPVSSPL---LAIESGKADDQKVVSKPAKVQAVLKGI 117
            Y Y QQLGISS+R+LLA+S D TPV+SPL   LA+  GK +DQKVVSKP+KVQAVLKGI
Sbjct: 61  YYYYFQQLGISSSRQLLADS-DVTPVASPLTPALALNGGKTEDQKVVSKPSKVQAVLKGI 119

Query: 118 KQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLL 177
           KQSPKK+NLVA LVRGMRVEDALLQLQ+T+KRA+KTVYQVIHSARANATHNHGLDPDRLL
Sbjct: 120 KQSPKKVNLVAELVRGMRVEDALLQLQLTVKRASKTVYQVIHSARANATHNHGLDPDRLL 179

Query: 178 VAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTAEEEAQIARLRVHKFRKLT 237
           VAEAFVGKGFFKKRVSYH+KG+ GIKVRPECRLTVVVRE+T EEEA++A+LRV  FRKL+
Sbjct: 180 VAEAFVGKGFFKKRVSYHAKGKCGIKVRPECRLTVVVREMTPEEEAKLAKLRVSNFRKLS 239

Query: 238 KREQRLVPHQLIETTPIWNRRG 259
           KRE+RLVPHQLIETT IWNR+ 
Sbjct: 240 KREKRLVPHQLIETTSIWNRKA 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255566195|ref|XP_002524085.1| 50S ribosomal protein L22, putative [Ricinus communis] gi|223536653|gb|EEF38295.1| 50S ribosomal protein L22, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449443420|ref|XP_004139475.1| PREDICTED: 50S ribosomal protein L22, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388493390|gb|AFK34761.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|18417177|ref|NP_567805.1| Ribosomal protein L22p/L17e family protein [Arabidopsis thaliana] gi|21553938|gb|AAM63019.1| unknown [Arabidopsis thaliana] gi|107738381|gb|ABF83687.1| At4g28360 [Arabidopsis thaliana] gi|110735706|dbj|BAE99833.1| hypothetical protein [Arabidopsis thaliana] gi|332660073|gb|AEE85473.1| Ribosomal protein L22p/L17e family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297847626|ref|XP_002891694.1| ribosomal protein L22 family protein [Arabidopsis lyrata subsp. lyrata] gi|297337536|gb|EFH67953.1| ribosomal protein L22 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357439103|ref|XP_003589828.1| 50S ribosomal protein L22 [Medicago truncatula] gi|355478876|gb|AES60079.1| 50S ribosomal protein L22 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388492452|gb|AFK34292.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|22330190|ref|NP_564605.2| Ribosomal protein L.2/L17e family protein [Arabidopsis thaliana] gi|79319746|ref|NP_001031174.1| Ribosomal protein L.2/L17e family protein [Arabidopsis thaliana] gi|186490375|ref|NP_001117473.1| Ribosomal protein L.2/L17e family protein [Arabidopsis thaliana] gi|62321786|dbj|BAD95410.1| chloroplast 50S ribosomal protein L22 [Arabidopsis thaliana] gi|109946433|gb|ABG48395.1| At1g52370 [Arabidopsis thaliana] gi|110742949|dbj|BAE99369.1| putative chloroplast 50S ribosomal protein L22 [Arabidopsis thaliana] gi|222424158|dbj|BAH20038.1| AT1G52370 [Arabidopsis thaliana] gi|332194673|gb|AEE32794.1| Ribosomal protein L.2/L17e family protein [Arabidopsis thaliana] gi|332194674|gb|AEE32795.1| Ribosomal protein L.2/L17e family protein [Arabidopsis thaliana] gi|332194675|gb|AEE32796.1| Ribosomal protein L.2/L17e family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224138266|ref|XP_002322771.1| predicted protein [Populus trichocarpa] gi|222867401|gb|EEF04532.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
TAIR|locus:2121318271 AT4G28360 [Arabidopsis thalian 0.974 0.970 0.626 2.2e-82
TAIR|locus:2018214269 AT1G52370 [Arabidopsis thalian 0.970 0.973 0.623 1.5e-81
TIGR_CMR|SPO_0486126 SPO_0486 "ribosomal protein L2 0.462 0.992 0.421 3.1e-19
TIGR_CMR|NSE_0271113 NSE_0271 "ribosomal protein L2 0.337 0.805 0.450 4.9e-14
ZFIN|ZDB-GENE-080303-28209 mrpl22 "mitochondrial ribosoma 0.411 0.531 0.348 7.9e-14
UNIPROTKB|Q0VFH6204 mrpl22 "39S ribosomal protein 0.411 0.544 0.375 1.3e-13
UNIPROTKB|Q5RAH3206 MRPL22 "39S ribosomal protein 0.411 0.538 0.348 2.1e-13
UNIPROTKB|Q9KNY9110 rplV "50S ribosomal protein L2 0.359 0.881 0.432 3.4e-13
TIGR_CMR|VC_2591110 VC_2591 "ribosomal protein L22 0.359 0.881 0.432 3.4e-13
UNIPROTKB|F1P2F4186 MRPL22 "Uncharacterized protei 0.411 0.596 0.339 5.6e-13
TAIR|locus:2121318 AT4G28360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 168/268 (62%), Positives = 212/268 (79%)

Query:     1 MVGWQRHLQPVLCQVGKILGHNYTASANFYXXXXXXXXXXXXXXXIQNLWTSPSTNISRP 60
             MVGW+R+LQ V+ QVG+ + +++ ++AN Y               +Q+L   PS + SRP
Sbjct:     1 MVGWKRNLQTVIRQVGRRVKNSHISTAN-YSSSTRNLESPFSQGYLQSL-LRPSYS-SRP 57

Query:    61 LYQYLQQLGISSTRKLLANSSD-ETPVSSPLLAIESGKADDQKVVSKPAKVQAVLKGIKQ 119
             LY +LQQLGIS++R+L A+     +P+SSP L + SGK ++QK++ K  KVQAVLK IKQ
Sbjct:    58 LYHHLQQLGISTSRQLQASEEPVSSPLSSPAL-LGSGKEEEQKIIPKRQKVQAVLKSIKQ 116

Query:   120 SPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVA 179
             SPKK+NLVAALVRGMRVEDAL+QLQVT+KRAA+TVY+VIH+ARANATHNHGLDPDRLLVA
Sbjct:   117 SPKKVNLVAALVRGMRVEDALIQLQVTVKRAAQTVYRVIHAARANATHNHGLDPDRLLVA 176

Query:   180 EAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELTAEEEAQIARLRVHKFRKLTKR 239
             EAFVGKG F K+V+YH+KGRSGI   P CRLTV+VRE T EEEA+IARL+VH F+K +KR
Sbjct:   177 EAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTPEEEAEIARLKVHNFKKKSKR 236

Query:   240 EQRLVPHQLIETTPIWNRRGKSSNREPS 267
             E++LVPH+LIET+PIWNRRG  +N   S
Sbjct:   237 ERQLVPHKLIETSPIWNRRGTKANHRSS 264
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0015934 "large ribosomal subunit" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
TAIR|locus:2018214 AT1G52370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0486 SPO_0486 "ribosomal protein L22" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0271 NSE_0271 "ribosomal protein L22" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080303-28 mrpl22 "mitochondrial ribosomal protein L22" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VFH6 mrpl22 "39S ribosomal protein L22, mitochondrial" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RAH3 MRPL22 "39S ribosomal protein L22, mitochondrial" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNY9 rplV "50S ribosomal protein L22" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2591 VC_2591 "ribosomal protein L22" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2F4 MRPL22 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027115001
SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (271 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00035271001
SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (140 aa)
•  •• • 0.979
GSVIVG00019749001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (161 aa)
•  •• • 0.974
GSVIVG00026943001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)
•  •• • 0.968
GSVIVG00026031001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (117 aa)
•  •• • 0.967
GSVIVG00023012001
SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (213 aa)
•  •• • 0.964
rps3
SubName- Full=Chromosome undetermined scaffold_3592, whole genome shotgun sequence; (207 aa)
•  •  • 0.961
GSVIVG00033342001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (203 aa)
•  •  • 0.956
GSVIVG00011509001
SubName- Full=Chromosome chr10 scaffold_312, whole genome shotgun sequence; (129 aa)
•  •• • 0.954
rps8
RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)
•  •  • 0.954
GSVIVG00023753001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (159 aa)
•  •• • 0.950

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
pfam00237105 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L 9e-38
cd00336105 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e 1e-35
PRK00565112 PRK00565, rplV, 50S ribosomal protein L22; Reviewe 1e-34
COG0091120 COG0091, RplV, Ribosomal protein L22 [Translation, 1e-32
TIGR01044103 TIGR01044, rplV_bact, ribosomal protein L22, bacte 1e-20
CHL00034117 CHL00034, rpl22, ribosomal protein L22 2e-19
PRK12279 311 PRK12279, PRK12279, 50S ribosomal protein L22/unkn 2e-11
PRK04223153 PRK04223, rpl22p, 50S ribosomal protein L22P; Revi 1e-07
TIGR01038150 TIGR01038, L22_arch, ribosomal protein L22(archaea 9e-05
>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e Back     alignment and domain information 
 Score =  128 bits (324), Expect = 9e-38
 Identities = 46/105 (43%), Positives = 65/105 (61%)

Query: 112 AVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGL 171
           AV + I+ SPKK  LVA L+RG  VE+AL  L+   K+AAK + +++ SA ANA +N GL
Sbjct: 1   AVARYIRISPKKARLVADLIRGKSVEEALAILEFVPKKAAKIILKLLKSAVANAENNKGL 60

Query: 172 DPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRE 216
           DPD L + E FV KG   KR    ++GR+    +    +T+V+ E
Sbjct: 61  DPDNLYIKEIFVDKGPTLKRFRPRARGRATPIRKRTSHITIVLSE 105

This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Length = 105
>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e Back     alignment and domain information
>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed Back     alignment and domain information
>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|130116 TIGR01044, rplV_bact, ribosomal protein L22, bacterial type Back     alignment and domain information
>gnl|CDD|214342 CHL00034, rpl22, ribosomal protein L22 Back     alignment and domain information
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed Back     alignment and domain information
>gnl|CDD|211620 TIGR01038, L22_arch, ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 270
CHL00034117 rpl22 ribosomal protein L22 100.0
PRK00565112 rplV 50S ribosomal protein L22; Reviewed 100.0
COG0091120 RplV Ribosomal protein L22 [Translation, ribosomal 100.0
TIGR01044103 rplV_bact ribosomal protein L22, bacterial type. T 100.0
KOG1711218 consensus Mitochondrial/chloroplast ribosomal prot 100.0
PRK12279 311 50S ribosomal protein L22/unknown domain fusion pr 100.0
PF00237105 Ribosomal_L22: Ribosomal protein L22p/L17e; InterP 100.0
cd00336105 Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17 100.0
TIGR01038150 L22_arch ribosomal protein L22(archaeal)/L17(eukar 100.0
PRK04223153 rpl22p 50S ribosomal protein L22P; Reviewed 100.0
PTZ00178181 60S ribosomal protein L17; Provisional 100.0
KOG3353175 consensus 60S ribosomal protein L22 [Translation, 99.42
>CHL00034 rpl22 ribosomal protein L22 Back     alignment and domain information 
Probab=100.00  E-value=2.6e-38  Score=259.89  Aligned_cols=112  Identities=33%  Similarity=0.469  Sum_probs=108.8

Q ss_pred             CCceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecC
Q 040446          106 KPAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGK  185 (270)
Q Consensus       106 k~~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~Vnk  185 (270)
                      +..+++|..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||.+||++++|+|+|+|||++||||+
T Consensus         6 ~~~~~~A~~~~ir~SpkK~r~va~~IRG~~v~~A~~~L~~~pkk~a~~i~klL~sA~aNA~~~~gld~d~L~I~~i~v~~   85 (117)
T CHL00034          6 STTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSAAANASHNMGLNKANLFISKAEVDE   85 (117)
T ss_pred             CCceEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHccCCCccceEEEEEEECC
Confidence            44679999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             CcccccccccCCCCccccccCceeEEEEEEec
Q 040446          186 GFFKKRVSYHSKGRSGIKVRPECRLTVVVREL  217 (270)
Q Consensus       186 G~~~KR~~pRARGRa~~irk~~~HItVVLkE~  217 (270)
                      ||++||++||||||++++++++|||+|+|+|.
T Consensus        86 G~~~KR~~prArGRa~~i~k~~sHI~Vvl~e~  117 (117)
T CHL00034         86 GPTLKRFRPRAQGRSYPIKKPTCHITIVLKDI  117 (117)
T ss_pred             CCccCCCCcccCCCCCcccCCCccEEEEEecC
Confidence            99999999999999999999999999999873

>PRK00565 rplV 50S ribosomal protein L22; Reviewed Back     alignment and domain information
>COG0091 RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01044 rplV_bact ribosomal protein L22, bacterial type Back     alignment and domain information
>KOG1711 consensus Mitochondrial/chloroplast ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional Back     alignment and domain information
>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e Back     alignment and domain information
>TIGR01038 L22_arch ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal) Back     alignment and domain information
>PRK04223 rpl22p 50S ribosomal protein L22P; Reviewed Back     alignment and domain information
>PTZ00178 60S ribosomal protein L17; Provisional Back     alignment and domain information
>KOG3353 consensus 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
3mrz_S112 Recognition Of The Amber Stop Codon By Release Fact 5e-12
1jzx_L134 Structural Basis For The Interaction Of Antibiotics 6e-12
1giy_S113 Crystal Structure Of The Ribosome At 5.5 A Resoluti 6e-12
1pnu_Q130 Crystal Structure Of A Streptomycin Dependent Ribos 6e-12
3sgf_W116 Crystal Structure Of Release Factor Rf3 Trapped In 9e-12
1p85_Q110 Real Space Refined Coordinates Of The 50s Subunit F 9e-12
2gya_Q106 Structure Of The 50s Subunit Of A Pre-Translocation 1e-11
3bbo_U199 Homology Model For The Spinach Chloroplast 50s Subu 1e-11
1bxe_A113 Ribosomal Protein L22 From Thermus Thermophilus Len 2e-11
2ftc_M110 Structural Model For The Large Subunit Of The Mamma 2e-10
1i4j_A110 Crystal Structure Of L22 Ribosomal Protein Mutant L 3e-09
>pdb|3MRZ|S Chain S, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 112 Back     alignment and structure 
Iteration: 1

 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 65/106 (61%)
Query: 111 QAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHG 170
           +A+ + ++ SP+K+ LV  L+RG  +E+A   L+ T KR A  V +V+ SA ANA +NH 
Sbjct: 4   KAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHD 63
Query: 171 LDPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRE 216
           +  DRL V  A+V +G   KRV   ++GR+ I  +    +TV++ E
Sbjct: 64  MLEDRLYVKAAYVDEGPALKRVLPRARGRADIIKKRTSHITVILGE 109
>pdb|1JZX|L Chain L, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria Length = 134 Back     alignment and structure
>pdb|1GIY|S Chain S, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Subunit, Three Trna, And Mrna Molecules Are In The File 1gix Length = 113 Back     alignment and structure
>pdb|1PNU|Q Chain Q, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 130 Back     alignment and structure
>pdb|3SGF|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome Length = 116 Back     alignment and structure
>pdb|1P85|Q Chain Q, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 110 Back     alignment and structure
>pdb|2GYA|Q Chain Q, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 106 Back     alignment and structure
>pdb|3BBO|U Chain U, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 199 Back     alignment and structure
>pdb|1BXE|A Chain A, Ribosomal Protein L22 From Thermus Thermophilus Length = 113 Back     alignment and structure
>pdb|2FTC|M Chain M, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 110 Back     alignment and structure
>pdb|1I4J|A Chain A, Crystal Structure Of L22 Ribosomal Protein Mutant Length = 110 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
2ftc_M110 Mitochondrial ribosomal protein L22 isoform A; mit 3e-41
3r8s_S110 50S ribosomal protein L22; protein biosynthesis, R 2e-35
3bbo_U199 Ribosomal protein L22; large ribosomal subunit, sp 8e-35
2zjr_P134 50S ribosomal protein L22; ribosome, large ribosom 3e-33
1i4j_A110 50S ribosomal protein L22; mutant, erythromycin re 1e-32
1vq8_R155 50S ribosomal protein L22P; ribosome 50S, protein- 1e-17
3iz5_V171 60S ribosomal protein L17 (L22P); eukaryotic ribos 1e-16
4a17_Q183 RPL17, 60S ribosomal protein L21; eukaryotic ribos 1e-15
3u5e_P184 L20A, YL17, 60S ribosomal protein L17-A; translati 2e-15
2zkr_r184 60S ribosomal protein L17; protein-RNA complex, 60 5e-15
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 3e-04
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Length = 110 Back     alignment and structure
 Score =  136 bits (346), Expect = 3e-41
 Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 1/105 (0%)

Query: 115 KGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLD-P 173
           + IK S  K+  +A L+RGM ++ AL QL+   K+ AK + +V+  A+  A  +H ++  
Sbjct: 4   RQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFR 63

Query: 174 DRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRELT 218
             L +AE+  G+G   KR+ YH +GR GI  +  C   V + E  
Sbjct: 64  SNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGP 108
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Length = 110 Back     alignment and structure
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 199 Back     alignment and structure
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Length = 134 Back     alignment and structure
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Length = 110 Back     alignment and structure
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Length = 155 Back     alignment and structure
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Length = 183 Back     alignment and structure
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V 3jyw_N Length = 184 Back     alignment and structure
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 184 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
3r8s_S110 50S ribosomal protein L22; protein biosynthesis, R 100.0
2zjr_P134 50S ribosomal protein L22; ribosome, large ribosom 100.0
2ftc_M110 Mitochondrial ribosomal protein L22 isoform A; mit 100.0
1i4j_A110 50S ribosomal protein L22; mutant, erythromycin re 100.0
1vq8_R155 50S ribosomal protein L22P; ribosome 50S, protein- 100.0
3bbo_U199 Ribosomal protein L22; large ribosomal subunit, sp 100.0
3j21_S155 50S ribosomal protein L22P; archaea, archaeal, KIN 100.0
2zkr_r184 60S ribosomal protein L17; protein-RNA complex, 60 100.0
3iz5_V171 60S ribosomal protein L17 (L22P); eukaryotic ribos 100.0
3u5e_P184 L20A, YL17, 60S ribosomal protein L17-A; translati 100.0
4a17_Q183 RPL17, 60S ribosomal protein L21; eukaryotic ribos 100.0
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Back     alignment and structure
Probab=100.00  E-value=2.5e-40  Score=267.73  Aligned_cols=109  Identities=39%  Similarity=0.474  Sum_probs=107.1

Q ss_pred             eEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecCCcc
Q 040446          109 KVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKGFF  188 (270)
Q Consensus       109 evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG~~  188 (270)
                      |++|.++++++||+|+++||++||||+|+||+.||+|+|+|+|++|+++|+||.+||++++|+|+|+|||++||||+||+
T Consensus         2 e~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~f~pkkaa~~v~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~~   81 (110)
T 3r8s_S            2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPS   81 (110)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEEE
T ss_pred             eEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHhhCCHHHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEeCCCCc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCccccccCceeEEEEEEec
Q 040446          189 KKRVSYHSKGRSGIKVRPECRLTVVVREL  217 (270)
Q Consensus       189 ~KR~~pRARGRa~~irk~~~HItVVLkE~  217 (270)
                      +||++||||||+++|++++|||+|+|+|.
T Consensus        82 ~KR~~pRA~GR~~~i~k~~~HI~vvl~ek  110 (110)
T 3r8s_S           82 MKRIMPRAKGRADRILKRTSHITVVVSDR  110 (110)
T ss_dssp             EEEEEECGGGCEEEEEEEEEEEEEEEECC
T ss_pred             cCCCCcCCCCCCCCcccCCccEEEEEecC
Confidence            99999999999999999999999999984
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Back     alignment and structure
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Back     alignment and structure
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Back     alignment and structure
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Back     alignment and structure
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N Back     alignment and structure
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 270
d2gycq1106 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escheric 1e-31
d2zjrp1127 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococ 3e-30
d1i4ja_110 d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquat 2e-29
d1vqor1150 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon 2e-21
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (278), Expect = 1e-31
 Identities = 43/105 (40%), Positives = 61/105 (58%)

Query: 112 AVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGL 171
           A  +  + S +K+ LVA L+RG +V  AL  L  T K+AA  V +V+ SA ANA HN G 
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGA 60

Query: 172 DPDRLLVAEAFVGKGFFKKRVSYHSKGRSGIKVRPECRLTVVVRE 216
           D D L V + FV +G   KR+   +KGR+   ++    +TVVV +
Sbjct: 61  DIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 105
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127 Back     information, alignment and structure
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110 Back     information, alignment and structure
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
d2zjrp1127 Ribosomal protein L22 {Deinococcus radiodurans [Ta 100.0
d1i4ja_110 Ribosomal protein L22 {Thermus aquaticus, subsp. T 100.0
d2gycq1106 Ribosomal protein L22 {Escherichia coli [TaxId: 56 100.0
d1vqor1150 Ribosomal protein L22 {Archaeon Haloarcula marismo 100.0
d1r9pa_134 NifU-like protein HI0377 {Haemophilus influenzae [ 81.92
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.5e-38  Score=261.68  Aligned_cols=112  Identities=35%  Similarity=0.457  Sum_probs=108.1

Q ss_pred             CceEEEEeCCCccCHHHHHHHHHHHcCCCHHHHHHHHhhchhhhHHHHHHHHHHHHHHhhHhCCCCCCCeEEEEEEecCC
Q 040446          107 PAKVQAVLKGIKQSPKKINLVAALVRGMRVEDALLQLQVTIKRAAKTVYQVIHSARANATHNHGLDPDRLLVAEAFVGKG  186 (270)
Q Consensus       107 ~~evkA~~r~iriSpKKlr~VarlIRGm~V~eAi~qL~fs~KKaAk~V~KlL~sA~aNA~~~~GlD~d~L~I~ea~VnkG  186 (270)
                      .+++.|..+++++||+|+++||++||||+|+||+.||+|+++|+|..|.++|+||++||++++|+|+|+|||++||||+|
T Consensus        14 ~~~~~A~~k~ir~Sp~K~r~v~~~IrG~~v~eAl~~L~f~~kkaa~~v~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~G   93 (127)
T d2zjrp1          14 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAG   93 (127)
T ss_dssp             CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEEC
T ss_pred             cchhhhhhcccccCHHHHHHHHHHHcCCcHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHhcccCcccceEEEEEEECCC
Confidence            34567889999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             cccccccccCCCCccccccCceeEEEEEEecC
Q 040446          187 FFKKRVSYHSKGRSGIKVRPECRLTVVVRELT  218 (270)
Q Consensus       187 ~~~KR~~pRARGRa~~irk~~~HItVVLkE~~  218 (270)
                      |++||++||||||+++|++++|||+|+|+|..
T Consensus        94 ~~~KR~~prArGRa~~i~k~~sHi~VvL~e~~  125 (127)
T d2zjrp1          94 PTLKRLIPRARGSANIIKKRTSHITIIVAEKG  125 (127)
T ss_dssp             CCEEEEEECSTTCEEEEEECCEEEEEEEEECC
T ss_pred             CcccCCCCCcCCCCCcccCCcccEEEEEEecC
Confidence            99999999999999999999999999999975
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Back     information, alignment and structure
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure