Citrus Sinensis ID: 040733
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 643 | 2.2.26 [Sep-21-2011] | |||||||
| P27819 | 652 | Acetolactate synthase 3, | N/A | no | 0.986 | 0.972 | 0.655 | 0.0 | |
| P27818 | 655 | Acetolactate synthase 1, | N/A | no | 0.989 | 0.970 | 0.654 | 0.0 | |
| P09114 | 664 | Acetolactate synthase 2, | N/A | no | 0.962 | 0.932 | 0.642 | 0.0 | |
| P17597 | 670 | Acetolactate synthase, ch | yes | no | 0.902 | 0.865 | 0.685 | 0.0 | |
| P09342 | 667 | Acetolactate synthase 1, | N/A | no | 0.923 | 0.890 | 0.665 | 0.0 | |
| P14874 | 637 | Acetolactate synthase 2, | N/A | no | 0.970 | 0.979 | 0.628 | 0.0 | |
| Q41768 | 638 | Acetolactate synthase 1, | N/A | no | 0.900 | 0.907 | 0.638 | 0.0 | |
| Q6K2E8 | 644 | Acetolactate synthase 1, | yes | no | 0.900 | 0.899 | 0.638 | 0.0 | |
| Q41769 | 638 | Acetolactate synthase 2, | N/A | no | 0.900 | 0.907 | 0.636 | 0.0 | |
| Q7XKQ8 | 663 | Probable acetolactate syn | no | no | 0.895 | 0.868 | 0.614 | 0.0 |
| >sp|P27819|ILVB3_BRANA Acetolactate synthase 3, chloroplastic OS=Brassica napus PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/651 (65%), Positives = 526/651 (80%), Gaps = 17/651 (2%)
Query: 2 ATTLSPPFIFNTP--KSPPTISRPLMPLPYSYNRIKKPS--LH---VTNSTLNIPTSTAP 54
AT+ SP + P KSP ISR LP+S +KPS LH ++ LN P + AP
Sbjct: 4 ATSSSPISLTAKPSSKSPLPISR--FSLPFSLTP-QKPSSRLHRPLAISAVLNSPVNVAP 60
Query: 55 FQQTD----FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IR 109
++TD F SR+APD+PRKGADI+VEALERQGV TVFAYPGGAS+EIHQ+LTRS+ IR
Sbjct: 61 -EKTDKIKTFISRYAPDEPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSTIR 119
Query: 110 SILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVS 169
++LPRHEQGG+FAAEGYARSSG PG+C+ +SGPG TN+++GL DA DS+P++AITGQV
Sbjct: 120 NVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADAMLDSVPLVAITGQVP 179
Query: 170 QKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229
++++GTDAFQE P+VEVTR +TKHNYLV+DVDDIPRI++EAFF+ATSGRPGPVL+D+P D
Sbjct: 180 RRMIGTDAFQETPIVEVTRSITKHNYLVMDVDDIPRIVQEAFFLATSGRPGPVLVDVPKD 239
Query: 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEEL 289
+Q +LA+PNW+QP +LP +S LP+ P+ L Q ++LI ESK PVL VGGG LNSSEEL
Sbjct: 240 IQQQLAIPNWDQPMRLPGYMSRLPQPPEVSQLGQIVRLISESKRPVLYVGGGSLNSSEEL 299
Query: 290 RKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNER 349
+FV LTGIPV T MGLG +PC DEL L+M+GM GTVYANYAV DLLLA GVRF++R
Sbjct: 300 GRFVELTGIPVASTLMGLGSYPCNDELSLQMLGMHGTVYANYAVEHSDLLLAFGVRFDDR 359
Query: 350 MTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDF 409
+T KLE FA+RAKIVHIDIDS EIGK K P VS+C D KL MN +LE++ DF
Sbjct: 360 VTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDF 419
Query: 410 SAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFY 469
WR EL EQK+K+P S+KTFGE IPPQYAIQ+L+ELT + IISTGVGQHQMWA QFY
Sbjct: 420 GVWRSELSEQKQKFPLSFKTFGEAIPPQYAIQVLDELTQG-KAIISTGVGQHQMWAAQFY 478
Query: 470 MYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENI 529
Y++ RQ L+SSG G+MGFGLPAA+GA+VANP AIVVDIDGDGSFIMN+QELA I+ EN+
Sbjct: 479 KYRKPRQWLSSSGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENL 538
Query: 530 PVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589
PVKILL+NNQ+LGM +++EDR+++ANRA+++LGDP R++EIFP+ML+FA ACGIPAARVT
Sbjct: 539 PVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARVT 598
Query: 590 KKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
KK+++R AIQ ML+TPGPYLLDV+ +QEHV+PMIP +FKD I E DGR
Sbjct: 599 KKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGR 649
|
Brassica napus (taxid: 3708) EC: 2EC: .EC: 2EC: .EC: 1EC: .EC: 6 |
| >sp|P27818|ILVB1_BRANA Acetolactate synthase 1, chloroplastic OS=Brassica napus PE=3 SV=1 | Back alignment and function description |
|---|
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/652 (65%), Positives = 525/652 (80%), Gaps = 16/652 (2%)
Query: 2 ATTLSPPFIFNTP--KSPPTISRPLMPLPYSYNRIKKPS-LH---VTNSTLNIPTSTAPF 55
AT+ SP + P KSP ISR LP+S K S LH ++ LN P + AP
Sbjct: 4 ATSSSPISLTAKPSSKSPLPISR--FSLPFSLTPQKDSSRLHRPLAISAVLNSPVNVAPP 61
Query: 56 --QQTD----FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-I 108
++TD F SR+APD+PRKGADI+VEALERQGV TVFAYPGGAS+EIHQ+LTRS+ I
Sbjct: 62 SPEKTDKNKTFVSRYAPDEPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSTI 121
Query: 109 RSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQV 168
R++LPRHEQGG+FAAEGYARSSG PG+C+ +SGPG TN+++GL DA DS+P++AITGQV
Sbjct: 122 RNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADAMLDSVPLVAITGQV 181
Query: 169 SQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228
++++GTDAFQE P+VEVTR +TKHNYLV+DVDDIPRI++EAFF+ATSGRPGPVL+D+P
Sbjct: 182 PRRMIGTDAFQETPIVEVTRSITKHNYLVMDVDDIPRIVQEAFFLATSGRPGPVLVDVPK 241
Query: 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEE 288
D+Q +LA+PNW+QP +LP +S LP+ P+ L Q ++LI ESK PVL VGGG LNSSEE
Sbjct: 242 DIQQQLAIPNWDQPMRLPGYMSRLPQPPEVSQLGQIVRLISESKRPVLYVGGGSLNSSEE 301
Query: 289 LRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE 348
L +FV LTGIPV T MGLG +PC DEL L+M+GM GTVYANYAV DLLLA GVRF++
Sbjct: 302 LGRFVELTGIPVASTLMGLGSYPCNDELSLQMLGMHGTVYANYAVEHSDLLLAFGVRFDD 361
Query: 349 RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFD 408
R+T KLE FA+RAKIVHIDIDS EIGK K P VS+C D KL MN +LE++ D
Sbjct: 362 RVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLD 421
Query: 409 FSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQF 468
F WR EL EQK+K+P S+KTFGE IPPQYAIQIL+ELT+ + IISTGVGQHQMWA QF
Sbjct: 422 FGVWRSELSEQKQKFPLSFKTFGEAIPPQYAIQILDELTEG-KAIISTGVGQHQMWAAQF 480
Query: 469 YMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAEN 528
Y Y++ RQ L+SSG G+MGFGLPAA+GA+VANP AIVVDIDGDGSFIMN+QELA I+ EN
Sbjct: 481 YKYRKPRQWLSSSGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVEN 540
Query: 529 IPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV 588
+PVKILL+NNQ+LGM +++EDR+++ANRA+++LGDP R++EIFP+ML+FA ACGIPAARV
Sbjct: 541 LPVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARV 600
Query: 589 TKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
TKK+++R AIQ ML+TPGPYLLDV+ +QEHV+PMIP +FKD I E DGR
Sbjct: 601 TKKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGR 652
|
Brassica napus (taxid: 3708) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 |
| >sp|P09114|ILVB2_TOBAC Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/635 (64%), Positives = 509/635 (80%), Gaps = 16/635 (2%)
Query: 22 RPLMPLPYSYNRIKKPSLHVTNSTL----------NIPTSTAPFQQTD----FSSRFAPD 67
R P P+ ++ P LH+T + + N+ ++T +T F SRFAPD
Sbjct: 29 RSTFPFPHHPHKTTPPPLHLTPTHIHSQRRRFTISNVISTTQKVSETQKAETFVSRFAPD 88
Query: 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNI-RSILPRHEQGGIFAAEGY 126
+PRKG+D++VEALER+GVT VFAYPGGAS+EIHQ+LTRS+I R++LPRHEQGG+FAAEGY
Sbjct: 89 EPRKGSDVLVEALEREGVTDVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGVFAAEGY 148
Query: 127 ARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEV 186
AR++G PGVC+ +SGPG TN+++GL DA DS+PI+AITGQV ++++GTDAFQE P+VEV
Sbjct: 149 ARATGFPGVCIATSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEV 208
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
TR +TKHNYLV+DV+DIPR+++EAFF+A SGRPGPVLID+P D+Q +L +P+W+QP +LP
Sbjct: 209 TRSITKHNYLVMDVEDIPRVVREAFFLARSGRPGPVLIDVPKDIQQQLVIPDWDQPMRLP 268
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMG 306
+S LPK P+E+ L Q ++LI ESK PVL VGGGC SSEELR+FV LTGIPV T MG
Sbjct: 269 GYMSRLPKLPNEMLLEQIVRLISESKKPVLYVGGGCSQSSEELRRFVELTGIPVASTLMG 328
Query: 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHI 366
LG FP DEL L M+GM GTVYANYAV+ DLLLA GVRF++R+T KLE FA+RAKIVHI
Sbjct: 329 LGAFPTGDELSLSMLGMHGTVYANYAVDSSDLLLAFGVRFDDRVTGKLEAFASRAKIVHI 388
Query: 367 DIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFS 426
DIDS EIGK K P VSICAD KL +N ILESK DFSAWR+EL QK KYP +
Sbjct: 389 DIDSAEIGKNKQPHVSICADIKLALQGLNSILESKEGKLKLDFSAWRQELTVQKVKYPLN 448
Query: 427 YKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSM 486
+KTFG+ IPPQYAIQ+L+ELT+ IISTGVGQHQMWA Q+Y Y++ RQ LTS G G+M
Sbjct: 449 FKTFGDAIPPQYAIQVLDELTNG-SAIISTGVGQHQMWAAQYYKYRKPRQWLTSGGLGAM 507
Query: 487 GFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVE 546
GFGLPAA+GAAV P +VVDIDGDGSFIMN+QELA IK EN+PVKI+L+NNQ+LGM V+
Sbjct: 508 GFGLPAAIGAAVGRPDEVVVDIDGDGSFIMNVQELATIKVENLPVKIMLLNNQHLGMVVQ 567
Query: 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPG 606
+EDR+++ANRA+++LG+P ++EIFP+MLKFAEACG+PAARVT + D+RAAIQ ML+TPG
Sbjct: 568 WEDRFYKANRAHTYLGNPSNEAEIFPNMLKFAEACGVPAARVTHRDDLRAAIQKMLDTPG 627
Query: 607 PYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGRA 641
PYLLDV+V +QEHV+PMIP +FKD I E DGR+
Sbjct: 628 PYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRS 662
|
Nicotiana tabacum (taxid: 4097) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 |
| >sp|P17597|ILVB_ARATH Acetolactate synthase, chloroplastic OS=Arabidopsis thaliana GN=ALS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/582 (68%), Positives = 486/582 (83%), Gaps = 2/582 (0%)
Query: 60 FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQG 118
F SRFAPD+PRKGADI+VEALERQGV TVFAYPGGAS+EIHQ+LTRS+ IR++LPRHEQG
Sbjct: 87 FISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQG 146
Query: 119 GIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAF 178
G+FAAEGYARSSG PG+C+ +SGPG TN+++GL DA DS+P++AITGQV ++++GTDAF
Sbjct: 147 GVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 206
Query: 179 QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPN 238
QE P+VEVTR +TKHNYLV+DV+DIPRII+EAFF+ATSGRPGPVL+D+P D+Q +LA+PN
Sbjct: 207 QETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPN 266
Query: 239 WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGI 298
W Q +LP +S +PK P++ L Q ++LI ESK PVL VGGGCLNSS+EL +FV LTGI
Sbjct: 267 WEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGI 326
Query: 299 PVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358
PV T MGLG +PC DEL L M+GM GTVYANYAV DLLLA GVRF++R+T KLE FA
Sbjct: 327 PVASTLMGLGSYPCDDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFA 386
Query: 359 TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE 418
+RAKIVHIDIDS EIGK K P VS+C D KL MN +LE++ DF WR EL+
Sbjct: 387 SRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNV 446
Query: 419 QKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
QK+K+P S+KTFGE IPPQYAI++L+ELTD + IISTGVGQHQMWA QFY YK+ RQ L
Sbjct: 447 QKQKFPLSFKTFGEAIPPQYAIKVLDELTDG-KAIISTGVGQHQMWAAQFYNYKKPRQWL 505
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
+S G G+MGFGLPAA+GA+VANP AIVVDIDGDGSFIMN+QELA I+ EN+PVK+LL+NN
Sbjct: 506 SSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNN 565
Query: 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
Q+LGM +++EDR+++ANRA++FLGDP ++ EIFP+ML FA ACGIPAARVTKK D+R AI
Sbjct: 566 QHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAI 625
Query: 599 QLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
Q ML+TPGPYLLDV+ +QEHV+PMIP +F D I E DGR
Sbjct: 626 QTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGR 667
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 |
| >sp|P09342|ILVB1_TOBAC Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/600 (66%), Positives = 497/600 (82%), Gaps = 6/600 (1%)
Query: 47 NIPTSTAPFQQTD----FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQS 102
N+ ++ QT+ F SRFAPD+PRKG+D++VEALER+GVT VFAYPGGAS+EIHQ+
Sbjct: 67 NVISTNQKVSQTEKTETFVSRFAPDEPRKGSDVLVEALEREGVTDVFAYPGGASMEIHQA 126
Query: 103 LTRSNI-RSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPI 161
LTRS+I R++LPRHEQGG+FAAEGYAR++G PGVC+ +SGPG TN+++GL DA DS+PI
Sbjct: 127 LTRSSIIRNVLPRHEQGGVFAAEGYARATGFPGVCIATSGPGATNLVSGLADALLDSVPI 186
Query: 162 LAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGP 221
+AITGQV ++++GTDAFQE P+VEVTR +TKHNYLV+DV+DIPR+++EAFF+A SGRPGP
Sbjct: 187 VAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVVREAFFLARSGRPGP 246
Query: 222 VLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGG 281
+LID+P D+Q +L +P+W+QP +LP +S LPK P+E+ L Q ++LI ESK PVL VGGG
Sbjct: 247 ILIDVPKDIQQQLVIPDWDQPMRLPGYMSRLPKLPNEMLLEQIVRLISESKKPVLYVGGG 306
Query: 282 CLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLA 341
C SSE+LR+FV LTGIPV T MGLG FP DEL L M+GM GTVYANYAV+ DLLLA
Sbjct: 307 CSQSSEDLRRFVELTGIPVASTLMGLGAFPTGDELSLSMLGMHGTVYANYAVDSSDLLLA 366
Query: 342 AGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESK 401
GVRF++R+T KLE FA+RAKIVHIDIDS EIGK K P VSICAD KL +N ILESK
Sbjct: 367 FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIKLALQGLNSILESK 426
Query: 402 GVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQH 461
DFSAWR+EL EQK K+P ++KTFG+ IPPQYAIQ+L+ELT+ IISTGVGQH
Sbjct: 427 EGKLKLDFSAWRQELTEQKVKHPLNFKTFGDAIPPQYAIQVLDELTNG-NAIISTGVGQH 485
Query: 462 QMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQEL 521
QMWA Q+Y Y++ RQ LTS G G+MGFGLPAA+GAAV P +VVDIDGDGSFIMN+QEL
Sbjct: 486 QMWAAQYYKYRKPRQWLTSGGLGAMGFGLPAAIGAAVGRPDEVVVDIDGDGSFIMNVQEL 545
Query: 522 AAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC 581
A IK EN+PVKI+L+NNQ+LGM V++EDR+++ANRA+++LG+P ++EIFP+MLKFAEAC
Sbjct: 546 ATIKVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNEAEIFPNMLKFAEAC 605
Query: 582 GIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGRA 641
G+PAARVT + D+RAAIQ ML+TPGPYLLDV+V +QEHV+PMIP +FKD I E DGR+
Sbjct: 606 GVPAARVTHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRS 665
|
Nicotiana tabacum (taxid: 4097) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 |
| >sp|P14874|ILVB2_BRANA Acetolactate synthase 2, chloroplastic OS=Brassica napus PE=3 SV=1 | Back alignment and function description |
|---|
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/635 (62%), Positives = 499/635 (78%), Gaps = 11/635 (1%)
Query: 9 FIFNTPKSPPTISRPLMPLPY----SYNRIKKPSLHVTNSTLNIPTSTAPFQQ--TDFSS 62
F P SP S +P+ S+ R + + V+ ++ TA ++ + FSS
Sbjct: 6 FFGTIPSSPTKASVFSLPVSVTTLPSFPRRRATRVSVSANSKKDQDRTASRRENPSTFSS 65
Query: 63 RFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIF 121
++AP+ PR GADI+VEALERQGV VFAYPGGAS+EIHQ+LTRSN IR++LPRHEQGGIF
Sbjct: 66 KYAPNVPRSGADILVEALERQGVDVVFAYPGGASMEIHQALTRSNTIRNVLPRHEQGGIF 125
Query: 122 AAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEI 181
AAEGYARSSG PG+C+ +SGPG N+++GL DA DS+P++AITGQV ++++GT AFQE
Sbjct: 126 AAEGYARSSGKPGICIATSGPGAMNLVSGLADALFDSVPLIAITGQVPRRMIGTMAFQET 185
Query: 182 PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ 241
PVVEVTR +TKHNYLV++VDDIPRI++EAFF+ATS RPGPVLID+P DVQ + A+PNW Q
Sbjct: 186 PVVEVTRTITKHNYLVMEVDDIPRIVREAFFLATSVRPGPVLIDVPKDVQQQFAIPNWEQ 245
Query: 242 PCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVT 301
P +LP +S++PK P L Q L+L+ ESK PVL VGGGCLNSSEELR+FV LTGIPV
Sbjct: 246 PMRLPLYMSTMPKPPKVSHLEQILRLVSESKRPVLYVGGGCLNSSEELRRFVELTGIPVA 305
Query: 302 CTTMGLGLFPCTD-ELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATR 360
T MGLG +PC D E L+M+GM GTVYANYAV DLLLA GVRF++R+T KLE FA+R
Sbjct: 306 STFMGLGSYPCDDEEFSLQMLGMHGTVYANYAVEYSDLLLAFGVRFDDRVTGKLEAFASR 365
Query: 361 AKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQK 420
AKIVHIDIDS EIGK K P VS+C D +L MN +LE++ + DF WR EL+EQ+
Sbjct: 366 AKIVHIDIDSTEIGKNKTPHVSVCCDVQLALQGMNEVLENRRD--VLDFGEWRCELNEQR 423
Query: 421 KKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTS 480
K+P YKTFGEEIPPQYAIQ+L+ELTD + II+TGVGQHQMWA QFY +K+ RQ L+S
Sbjct: 424 LKFPLRYKTFGEEIPPQYAIQLLDELTDG-KAIITTGVGQHQMWAAQFYRFKKPRQWLSS 482
Query: 481 SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540
G G+MGFGLPAAMGAA+ANPGA+VVDIDGDGSFIMN+QELA I+ EN+PVK+LLINNQ+
Sbjct: 483 GGLGAMGFGLPAAMGAAIANPGAVVVDIDGDGSFIMNIQELATIRVENLPVKVLLINNQH 542
Query: 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL 600
LGM +++ED ++ ANRA+SFLGDP +FPDML FA +CGIPAARVT+++D+R AIQ
Sbjct: 543 LGMVLQWEDHFYAANRADSFLGDPANPEAVFPDMLLFAASCGIPAARVTRREDLREAIQT 602
Query: 601 MLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTIL 635
ML+TPGP+LLDV+ +Q+HV+P+IP +FKD I+
Sbjct: 603 MLDTPGPFLLDVVCPHQDHVLPLIPSGGTFKDIIV 637
|
Brassica napus (taxid: 3708) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q41768|ILVB1_MAIZE Acetolactate synthase 1, chloroplastic OS=Zea mays GN=ALS1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/581 (63%), Positives = 461/581 (79%), Gaps = 2/581 (0%)
Query: 64 FAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFA 122
+ P PRKGADI+VE+LER GV VFAYPGGAS+EIHQ+LTRS I + L RHEQG FA
Sbjct: 59 WGPTDPRKGADILVESLERCGVRDVFAYPGGASMEIHQALTRSPVIANHLFRHEQGEAFA 118
Query: 123 AEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIP 182
A GYARSSG GVC+ +SGPG TN+++ L DA DS+P++AITGQV ++++GTDAFQE P
Sbjct: 119 ASGYARSSGRVGVCIATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETP 178
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
+VEVTR +TKHNYLVLDVDDIPR+++EAFF+A+SGRPGPVL+DIP D+Q ++AVP W++P
Sbjct: 179 IVEVTRSITKHNYLVLDVDDIPRVVQEAFFLASSGRPGPVLVDIPKDIQQQMAVPVWDKP 238
Query: 243 CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTC 302
LP I+ LPK P L Q L+L+ ES+ PVL VGGGC S EELR+FV LTGIPVT
Sbjct: 239 MSLPGYIARLPKPPATELLEQVLRLVGESRRPVLYVGGGCAASGEELRRFVELTGIPVTT 298
Query: 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK 362
T MGLG FP D L LRM+GM GTVYANYAV++ DLLLA GVRF++R+T K+E FA+RAK
Sbjct: 299 TLMGLGNFPSDDPLSLRMLGMHGTVYANYAVDKADLLLALGVRFDDRVTGKIEAFASRAK 358
Query: 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK 422
IVH+DID EIGK K P VSICAD KL MN +LE FDF +W +EL +QK++
Sbjct: 359 IVHVDIDPAEIGKNKQPHVSICADVKLALQGMNALLEGSTSKKSFDFGSWNDELDQQKRE 418
Query: 423 YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
+P YKT EEI PQYAIQ+L+ELT E II TGVGQHQMWA Q+Y YKR RQ L+S+G
Sbjct: 419 FPLGYKTSNEEIQPQYAIQVLDELTKG-EAIIGTGVGQHQMWAAQYYTYKRPRQWLSSAG 477
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
G+MGFGLPAA GA+VANPG VVDIDGDGSF+MN+QELA I+ EN+PVK+ ++NNQ+LG
Sbjct: 478 LGAMGFGLPAAAGASVANPGVTVVDIDGDGSFLMNVQELAMIRIENLPVKVFVLNNQHLG 537
Query: 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML 602
M V++EDR+++ANRA+++LG+P +SEI+PD + A+ IPA RVTKK +VRAAI+ ML
Sbjct: 538 MVVQWEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNIPAVRVTKKNEVRAAIKKML 597
Query: 603 ETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGRALH 643
ETPGPYLLD++V +QEHV+PMIP +FKD IL+ DGR ++
Sbjct: 598 ETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 638
|
Zea mays (taxid: 4577) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q6K2E8|ILVB1_ORYSJ Acetolactate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/581 (63%), Positives = 464/581 (79%), Gaps = 2/581 (0%)
Query: 64 FAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFA 122
+ P +PRKGADI+VEALER GV+ VFAYPGGAS+EIHQ+LTRS I + L RHEQG FA
Sbjct: 65 WGPAEPRKGADILVEALERCGVSDVFAYPGGASMEIHQALTRSPVITNHLFRHEQGEAFA 124
Query: 123 AEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIP 182
A GYAR+SG GVC+ +SGPG TN+++ L DA DS+P++AITGQV ++++GTDAFQE P
Sbjct: 125 ASGYARASGRVGVCVATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETP 184
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
+VEVTR +TKHNYLVLDV+DIPR+I+EAFF+A+SGRPGPVL+DIP D+Q ++AVP W+
Sbjct: 185 IVEVTRSITKHNYLVLDVEDIPRVIQEAFFLASSGRPGPVLVDIPKDIQQQMAVPVWDTS 244
Query: 243 CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTC 302
LP I+ LPK P L Q L+L+ ES+ P+L VGGGC S +ELR FV LTGIPVT
Sbjct: 245 MNLPGYIARLPKPPATELLEQVLRLVGESRRPILYVGGGCSASGDELRWFVELTGIPVTT 304
Query: 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK 362
T MGLG FP D L LRM+GM GTVYANYAV++ DLLLA GVRF++R+T K+E FA+RAK
Sbjct: 305 TLMGLGNFPSDDPLSLRMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKIEAFASRAK 364
Query: 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK 422
IVHIDID EIGK K P VSICAD KL +N +L+ DFSAW EL +QK++
Sbjct: 365 IVHIDIDPAEIGKNKQPHVSICADVKLALQGLNALLQQSTTKTSSDFSAWHNELDQQKRE 424
Query: 423 YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
+P YKTFGEEIPPQYAIQ+L+ELT E II+TGVGQHQMWA Q+Y YKR RQ L+S+G
Sbjct: 425 FPLGYKTFGEEIPPQYAIQVLDELTKG-EAIIATGVGQHQMWAAQYYTYKRPRQWLSSAG 483
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
G+MGFGLPAA GA+VANPG VVDIDGDGSF+MN+QELA I+ EN+PVK++++NNQ+LG
Sbjct: 484 LGAMGFGLPAAAGASVANPGVTVVDIDGDGSFLMNIQELALIRIENLPVKVMVLNNQHLG 543
Query: 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML 602
M V++EDR+++ANRA+++LG+P +SEI+PD + A+ IPA RVTKK +VRAAI+ ML
Sbjct: 544 MVVQWEDRFYKANRAHTYLGNPECESEIYPDFVTIAKGFNIPAVRVTKKSEVRAAIKKML 603
Query: 603 ETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGRALH 643
ETPGPYLLD++V +QEHV+PMIP +FKD IL+ DGR ++
Sbjct: 604 ETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 644
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q41769|ILVB2_MAIZE Acetolactate synthase 2, chloroplastic OS=Zea mays GN=ALS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/581 (63%), Positives = 458/581 (78%), Gaps = 2/581 (0%)
Query: 64 FAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFA 122
+ P++PRKG+DI+VEALER GV VFAYPGGAS+EIHQ+LTRS I + L RHEQG FA
Sbjct: 59 WGPNEPRKGSDILVEALERCGVRDVFAYPGGASMEIHQALTRSPVIANHLFRHEQGEAFA 118
Query: 123 AEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIP 182
A YARSSG GVC+ +SGPG TN+++ L DA DS+P++AITGQV ++++GTDAFQE P
Sbjct: 119 ASAYARSSGRVGVCIATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETP 178
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
+VEVTR +TKHNYLVLDVDDIPR+++EAFF+A+SGRPGPVL+DIP D+Q ++AVP W+ P
Sbjct: 179 IVEVTRSITKHNYLVLDVDDIPRVVQEAFFLASSGRPGPVLVDIPKDIQQQMAVPAWDTP 238
Query: 243 CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTC 302
LP I+ LPK P L Q L+L+ ES+ PVL VGGGC S EEL +FV LTGIPVT
Sbjct: 239 MSLPGYIARLPKPPATEFLEQVLRLVGESRRPVLYVGGGCAASGEELCRFVELTGIPVTT 298
Query: 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK 362
T MGLG FP D L LRM+GM GTVYANYAV++ DLLLA GVRF++R+T K+E FA RAK
Sbjct: 299 TLMGLGNFPSDDPLSLRMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKIEAFAGRAK 358
Query: 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK 422
IVHIDID EIGK K P VSICAD KL MN +LE FDF +W +EL +QK++
Sbjct: 359 IVHIDIDPAEIGKNKQPHVSICADVKLALQGMNTLLEGSTSKKSFDFGSWHDELDQQKRE 418
Query: 423 YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
+P YK F EEI PQYAIQ+L+ELT E II+TGVGQHQMWA Q+Y YKR RQ L+S+G
Sbjct: 419 FPLGYKIFNEEIQPQYAIQVLDELTKG-EAIIATGVGQHQMWAAQYYTYKRPRQWLSSAG 477
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
G+MGFGLPAA GAAVANPG VVDIDGDGSF+MN+QELA I+ EN+PVK+ ++NNQ+LG
Sbjct: 478 LGAMGFGLPAAAGAAVANPGVTVVDIDGDGSFLMNIQELAMIRIENLPVKVFVLNNQHLG 537
Query: 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML 602
M V++EDR+++ANRA++FLG+P +SEI+PD + A+ IPA RVTKK +V AAI+ ML
Sbjct: 538 MVVQWEDRFYKANRAHTFLGNPENESEIYPDFVAIAKGFNIPAVRVTKKSEVHAAIKKML 597
Query: 603 ETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGRALH 643
E PGPYLLD++V +QEHV+PMIP +FKD IL+ DGR ++
Sbjct: 598 EAPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY 638
|
Zea mays (taxid: 4577) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q7XKQ8|ILVB2_ORYSJ Probable acetolactate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/583 (61%), Positives = 461/583 (79%), Gaps = 7/583 (1%)
Query: 65 APDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAA 123
AP RKGADI+VEALER GV VF YPGGAS+EIHQ+LTRS IR+ L RHEQG FAA
Sbjct: 80 APMGQRKGADIVVEALERCGVRDVFEYPGGASMEIHQALTRSPVIRNHLLRHEQGEAFAA 139
Query: 124 EGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPV 183
GYARSSG PGVC+ +SGPG TN+++ L DA+ DS+P++AITGQ ++++GTDAFQE P+
Sbjct: 140 SGYARSSGRPGVCVATSGPGATNLVSALADAHLDSVPLVAITGQAPRRMIGTDAFQETPI 199
Query: 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPC 243
VE TR +TKHNYL+LDVDDIPR+I EAFF+A++GRPGPVL+DIP D+Q ++AVP+W+ P
Sbjct: 200 VEFTRSITKHNYLILDVDDIPRVINEAFFLASTGRPGPVLVDIPKDIQQQMAVPSWDAPM 259
Query: 244 KLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCT 303
+LP IS LPK P L + ++L+ +++ PVL VGGGC S ELR+FV LTGIPVT T
Sbjct: 260 RLPGYISRLPKPPAANLLDEVIRLVGDAERPVLYVGGGCSASGYELRRFVELTGIPVTTT 319
Query: 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKI 363
MG+G FP D L LRM+GM GTVYANYAV+ DLLLA GVRF++R+T K+E FA+RAKI
Sbjct: 320 LMGIGNFPSDDPLSLRMLGMHGTVYANYAVDNADLLLALGVRFDDRVTGKVEAFASRAKI 379
Query: 364 VHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFM---FDFSAWREELHEQK 420
VH+DID +E+GK K P VSICAD KL MN +LE + DFSAWR EL ++K
Sbjct: 380 VHVDIDPSELGKNKQPHVSICADVKLALQGMNAMLEEQSAAAARKNLDFSAWRSELEKKK 439
Query: 421 KKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTS 480
++P Y+TFGEEIPPQYAIQ+L+E+T+ E I++TGVGQHQMWA Q Y Y+R RQ L+S
Sbjct: 440 VEFPLGYRTFGEEIPPQYAIQVLDEVTNG-EAIVATGVGQHQMWATQHYTYRRPRQWLSS 498
Query: 481 SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540
+G G+MGFGLPAA GAAVANPGA VVDIDGDGS +MN+QELA ++ E++PVK++++NNQ+
Sbjct: 499 AGLGAMGFGLPAAAGAAVANPGATVVDIDGDGSLLMNIQELAMVRVEDLPVKVMVLNNQH 558
Query: 541 LGMNVEYEDRYFEANRANSFLGDPLRK--SEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
LGM V++EDR+++ANRA+++LG+P E++PD + A GIPAARVT+K +VRAA+
Sbjct: 559 LGMVVQWEDRFYDANRAHTYLGNPAANGGGEVYPDFVTIAGGFGIPAARVTRKGEVRAAV 618
Query: 599 QLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGRA 641
+ M+ PGPYLLDV+V +QEHV+PMIP + +FKD I++ DGR+
Sbjct: 619 EEMMAAPGPYLLDVVVPHQEHVLPMIPSNGAFKDIIVDGDGRS 661
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 2 EC: . EC: 1 EC: . EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 643 | ||||||
| 255540223 | 660 | acetolactate synthase, putative [Ricinus | 0.953 | 0.928 | 0.700 | 0.0 | |
| 224136183 | 650 | predicted protein [Populus trichocarpa] | 0.953 | 0.943 | 0.697 | 0.0 | |
| 356549355 | 645 | PREDICTED: acetolactate synthase 2, chlo | 0.993 | 0.990 | 0.651 | 0.0 | |
| 449440546 | 665 | PREDICTED: acetolactate synthase 3, chlo | 0.900 | 0.870 | 0.718 | 0.0 | |
| 356555166 | 653 | PREDICTED: acetolactate synthase 2, chlo | 0.953 | 0.938 | 0.673 | 0.0 | |
| 124370 | 652 | RecName: Full=Acetolactate synthase 3, c | 0.986 | 0.972 | 0.655 | 0.0 | |
| 124366 | 655 | RecName: Full=Acetolactate synthase 1, c | 0.989 | 0.970 | 0.654 | 0.0 | |
| 1130684 | 659 | acetohydroxyacid synthase [Gossypium hir | 0.967 | 0.943 | 0.666 | 0.0 | |
| 357446499 | 655 | Acetolactate synthase [Medicago truncatu | 0.976 | 0.958 | 0.657 | 0.0 | |
| 22450043 | 585 | putative acetolactate synthase [Raphanus | 0.902 | 0.991 | 0.695 | 0.0 |
| >gi|255540223|ref|XP_002511176.1| acetolactate synthase, putative [Ricinus communis] gi|223550291|gb|EEF51778.1| acetolactate synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/622 (70%), Positives = 517/622 (83%), Gaps = 9/622 (1%)
Query: 27 LPYSYNRIKKP---SLHVTNS----TLNIPTSTAPFQQTDFSSRFAPDKPRKGADIIVEA 79
LP+S N K SLH+TN+ IP +TAP Q + RFAPD+PRKG+DI+VEA
Sbjct: 37 LPFSLNPQKSTAHRSLHITNAISKPATTIPATTAPVPQPSPNPRFAPDEPRKGSDILVEA 96
Query: 80 LERQGVTTVFAYPGGASIEIHQSLTRSNI-RSILPRHEQGGIFAAEGYARSSGTPGVCLV 138
LERQGVT VFAYPGGAS+EIHQ+LTRS I R++LPRHEQGG+FAAEGYARSSG PGVC+
Sbjct: 97 LERQGVTDVFAYPGGASLEIHQALTRSPIIRNVLPRHEQGGVFAAEGYARSSGKPGVCIA 156
Query: 139 SSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVL 198
+SGPG TN+++GL DA DS+PI+AITGQV ++++GTDAFQE P+VEVTR +TKHNYLVL
Sbjct: 157 TSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVL 216
Query: 199 DVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDE 258
DVDDIPRI++EAFF+ATSGRPGPVLID+P D+Q +LAVPNWN P KLP +S LPK P++
Sbjct: 217 DVDDIPRIVQEAFFLATSGRPGPVLIDVPKDIQQQLAVPNWNTPIKLPGYMSRLPKVPND 276
Query: 259 LALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCL 318
L Q ++LI ESK PVL VGGGCLNSSEELR+FV LTGIPV T MGLG FP DEL L
Sbjct: 277 SHLEQIVRLISESKKPVLYVGGGCLNSSEELRRFVELTGIPVASTLMGLGAFPVGDELSL 336
Query: 319 RMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKL 378
+M+GM GTVYANY+V++ DLLLA GVRF++R+T KLE FA+RAKIVHIDIDS EIGK K
Sbjct: 337 QMLGMHGTVYANYSVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQ 396
Query: 379 PDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQY 438
P VS+C D KL MN ILESKG DF AWREEL+EQK KYP S+KTFG+ IPPQY
Sbjct: 397 PHVSVCGDVKLALQGMNKILESKGAKSKLDFKAWREELNEQKVKYPLSFKTFGDAIPPQY 456
Query: 439 AIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAV 498
AIQ+L+ELT+ IISTGVGQHQMWA QFY YKR RQ LTS G G+MGFGLPAA+GAAV
Sbjct: 457 AIQVLDELTNG-NAIISTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAV 515
Query: 499 ANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRAN 558
ANPGA+VVDIDGDGSFIMN+QELA I+ EN+P+KILL+NNQ+LGM V++EDR+++ANRA+
Sbjct: 516 ANPGAVVVDIDGDGSFIMNVQELATIRVENLPIKILLLNNQHLGMVVQWEDRFYKANRAH 575
Query: 559 SFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQE 618
++LGDP +SEIFP+MLKFAEACGIPAARVT+K+D+RAAIQ ML+TPGPYLLDV+V +QE
Sbjct: 576 TYLGDPSNESEIFPNMLKFAEACGIPAARVTRKEDLRAAIQEMLDTPGPYLLDVIVPHQE 635
Query: 619 HVVPMIPYDKSFKDTILEDDGR 640
HV+PMIP +FKD I E DGR
Sbjct: 636 HVLPMIPSGGAFKDVITEGDGR 657
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136183|ref|XP_002322262.1| predicted protein [Populus trichocarpa] gi|222869258|gb|EEF06389.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/618 (69%), Positives = 515/618 (83%), Gaps = 5/618 (0%)
Query: 27 LPYSYNRIKKPSLHVTNS--TLNIPTSTAPFQQTDFS-SRFAPDKPRKGADIIVEALERQ 83
LP+++N K SLH++NS T+ +P FS SRFAPD+PRKGADI+VEALER+
Sbjct: 31 LPFAFNPKKPCSLHISNSLSKPASTTTASPATTEKFSFSRFAPDQPRKGADILVEALERE 90
Query: 84 GVTTVFAYPGGASIEIHQSLTRSNI-RSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142
GV VFAYPGGAS+EIHQ+LTRSNI R++LPRHEQGG+FAAEGYAR+SG PGVC+ +SGP
Sbjct: 91 GVKDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARASGLPGVCIATSGP 150
Query: 143 GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDD 202
G TN+++GL DA DS+PI+AITGQV ++++GTDAFQE P+VEVTR +TKHNYLVLDVDD
Sbjct: 151 GATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDD 210
Query: 203 IPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALR 262
IPRI++EAFF+ATSGRPGPVLIDIP D+Q +LAVPNW+ P KLP +S LPK P+EL L
Sbjct: 211 IPRIVREAFFLATSGRPGPVLIDIPKDIQQQLAVPNWDVPMKLPGYLSRLPKNPNELHLE 270
Query: 263 QTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVG 322
Q ++LI ESK PVL VGGGCLNSSEELR+FV LTGIPV T MGLG FP DEL L+M+G
Sbjct: 271 QIVRLISESKKPVLYVGGGCLNSSEELRRFVELTGIPVASTLMGLGAFPVGDELSLQMLG 330
Query: 323 MFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVS 382
M GTVYANYAV++ DLLLA GVRF++R+T KLE FA+RAKIVHIDIDS EIGK K P VS
Sbjct: 331 MHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVS 390
Query: 383 ICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQI 442
+C D K+ MN ILES+G DF AWREEL+EQK P S+KTFGE IPPQYAIQ+
Sbjct: 391 VCGDVKVALQGMNKILESRGAKGKMDFRAWREELNEQKMNNPLSFKTFGEAIPPQYAIQV 450
Query: 443 LNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPG 502
L+ELTD I+STGVGQHQMWA QFY YKR RQ LTS G G+MGFGLPAA+GAAVANP
Sbjct: 451 LDELTDG-NAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPD 509
Query: 503 AIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLG 562
AIVVDIDGDGSFIMN+QELA I+ EN+P+KI+L+NNQ+LGM V++EDR+++ANRA+++LG
Sbjct: 510 AIVVDIDGDGSFIMNVQELATIRVENLPIKIMLLNNQHLGMVVQWEDRFYKANRAHTYLG 569
Query: 563 DPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVP 622
DP +SEIFP+MLKFA+ACGIPAARVT+K D+RAAIQ ML+TPGPYLLDV+V +QEHV+P
Sbjct: 570 DPSNESEIFPNMLKFADACGIPAARVTRKDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLP 629
Query: 623 MIPYDKSFKDTILEDDGR 640
MIP +FKD I+E DGR
Sbjct: 630 MIPSGGAFKDVIIEGDGR 647
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549355|ref|XP_003543059.1| PREDICTED: acetolactate synthase 2, chloroplastic-like [Glycine max] gi|255689393|gb|ACU30048.1| acetohydroxyacid synthase, partial [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/643 (65%), Positives = 522/643 (81%), Gaps = 4/643 (0%)
Query: 1 MATTLSPPFIFNTPKSPPTISRPLM--PLPYSYNRIKKPSLHVTNSTLNIPTSTAPFQQT 58
MA +P F+ S P + +PYS + ++ SL ++++ + T ++
Sbjct: 1 MAAITAPKAAFSVLPSSSHSPNPFVRFAIPYSPHHSQRRSLRISSALSDATTKSSTAAAE 60
Query: 59 DFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQ 117
F+SRF D+PRKGADI+VEALERQGVT VFAYPGGAS+EIHQ+LTRS+ IR++LPRHEQ
Sbjct: 61 AFASRFGLDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSSSIRNVLPRHEQ 120
Query: 118 GGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA 177
GG+FAAEGYARSSG PGVC+ +SGPG TN+++GL DA DS+P++AITGQV ++++GTDA
Sbjct: 121 GGVFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDA 180
Query: 178 FQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVP 237
FQE P+VEVTR +TKHNYLVLDVDDIPRI+ EAFF+ATSGRPGPVLIDIP D+Q +LA+P
Sbjct: 181 FQETPIVEVTRSITKHNYLVLDVDDIPRIVNEAFFLATSGRPGPVLIDIPKDIQQQLAIP 240
Query: 238 NWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTG 297
NW+QP +LP S LPK P+E L ++L++ESK PVL VGGGCLNSSEELR+FV LTG
Sbjct: 241 NWDQPIRLPGYTSRLPKSPNEKHLELIVRLVMESKKPVLYVGGGCLNSSEELRRFVELTG 300
Query: 298 IPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDF 357
+PV T MGLG +P D+ L+M+GM GTVYANYAV+ DLLLA GVRF++R+T KLE F
Sbjct: 301 VPVASTLMGLGAYPIADDNSLQMLGMHGTVYANYAVDRADLLLAFGVRFDDRVTGKLEAF 360
Query: 358 ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELH 417
A+RAKIVHIDIDS EIGK K P VS+CAD KL +N +LES+GV DF WREEL+
Sbjct: 361 ASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRVLESRGVAGKLDFRGWREELN 420
Query: 418 EQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQL 477
EQK+++P SYKTF +EI PQYAIQ+L+ELT+ E I+STGVGQHQMWA QFY YKR RQ
Sbjct: 421 EQKRRFPLSYKTFEKEISPQYAIQVLDELTNG-EAIVSTGVGQHQMWAAQFYKYKRPRQW 479
Query: 478 LTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537
LTS G G+MGFGLPAA+GAAVANPGA+VVDIDGDGSF+MN+QELA IK E +PVKILL+N
Sbjct: 480 LTSGGLGAMGFGLPAAIGAAVANPGAVVVDIDGDGSFMMNVQELATIKVEKLPVKILLLN 539
Query: 538 NQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAA 597
NQ+LGM V++EDR++++NRA+++LGDP ++ I+P+MLKFA+ACGIPAARVTKK+D+RAA
Sbjct: 540 NQHLGMVVQWEDRFYKSNRAHTYLGDPSNENAIYPNMLKFADACGIPAARVTKKEDLRAA 599
Query: 598 IQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
IQ MLETPGPYLLDV+V +QEHV+PMIP + +F+D I E DGR
Sbjct: 600 IQKMLETPGPYLLDVIVPHQEHVLPMIPSNGTFQDVITEGDGR 642
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440546|ref|XP_004138045.1| PREDICTED: acetolactate synthase 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/582 (71%), Positives = 496/582 (85%), Gaps = 3/582 (0%)
Query: 60 FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNI-RSILPRHEQG 118
F+SRFA D+PRKGADI+VEALERQGVT VFAYPGGAS+EIHQ+LTRS+I R++LPRHEQG
Sbjct: 83 FASRFAADEPRKGADILVEALERQGVTNVFAYPGGASMEIHQALTRSSIIRNVLPRHEQG 142
Query: 119 GIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAF 178
G+FAAEGYARSSG PGVC+ +SGPG TN+++GL DA DS+P++AITGQV ++++GTDAF
Sbjct: 143 GVFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 202
Query: 179 QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPN 238
QE P+VEVTR +TKHNYLVLDVDDIPRI+ EAFF+A+SGRPGPVLIDIP DVQ +LAVPN
Sbjct: 203 QETPIVEVTRSITKHNYLVLDVDDIPRIVSEAFFLASSGRPGPVLIDIPKDVQQQLAVPN 262
Query: 239 WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGI 298
WNQP KLP +S LPK P + L Q L+LI ESK PVL VGGGCLNSSEELR+FV LTGI
Sbjct: 263 WNQPMKLPGYLSRLPKPPTDSHLEQILRLISESKKPVLYVGGGCLNSSEELRRFVKLTGI 322
Query: 299 PVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358
PV T MGLG +PC+D+L L+M+GM GTVYANYAV++ DLLLA GVRF++R+T KLE FA
Sbjct: 323 PVASTLMGLGAYPCSDDLSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFA 382
Query: 359 TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE 418
+RAKIVHIDIDS EIGK K P VS+C D KL MN +LE K FDFSAWREEL+E
Sbjct: 383 SRAKIVHIDIDSAEIGKNKQPHVSVCGDVKLALQGMNRLLE-KAHMLHFDFSAWREELNE 441
Query: 419 QKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
QK KYP ++KTF E IPPQYAIQ+L+ELT+ E I+STGVGQHQMWA QFY YK+ RQ L
Sbjct: 442 QKSKYPLTFKTFDEAIPPQYAIQLLDELTNG-EAIVSTGVGQHQMWAAQFYKYKKPRQWL 500
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
TS G G+MGFGLPAAMGAAVANPGA+VVDIDGDGSFIMN+QELA I E +PVKILL+NN
Sbjct: 501 TSGGLGAMGFGLPAAMGAAVANPGAVVVDIDGDGSFIMNVQELATISVEKLPVKILLLNN 560
Query: 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
Q+LGM V++EDR+++ANRA+++LG+P +SEIFP+MLKFAEACGIPAARVTKK ++RAA+
Sbjct: 561 QHLGMVVQWEDRFYKANRAHTYLGNPSNESEIFPNMLKFAEACGIPAARVTKKAELRAAM 620
Query: 599 QLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
+ MLET GPY+LDV+V +QEHV+PMIP +FKD I E DGR
Sbjct: 621 KKMLETEGPYMLDVIVPHQEHVLPMIPSGGAFKDVITEGDGR 662
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555166|ref|XP_003545907.1| PREDICTED: acetolactate synthase 2, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/616 (67%), Positives = 512/616 (83%), Gaps = 3/616 (0%)
Query: 27 LPYSYNRIKKPSLHVTNSTLNIPTSTAPFQQT-DFSSRFAPDKPRKGADIIVEALERQGV 85
LP S ++PSL ++++ + T DF SRF ++PRKGADI+VEALERQGV
Sbjct: 36 LPNSSYHSQRPSLKISSALSDATAKTTTAAAAEDFVSRFGLEEPRKGADILVEALERQGV 95
Query: 86 TTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144
T VFAYPGGAS+EIHQ+LTRS +IR++LPRHEQGG+FAAEGYARSSG PGVC+ +SGPG
Sbjct: 96 TDVFAYPGGASMEIHQALTRSASIRNVLPRHEQGGVFAAEGYARSSGIPGVCIATSGPGA 155
Query: 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIP 204
TN+++GL DA DS+P++AITGQV ++++GTDAFQE P+VEVTR +TKHNYLVLDVDDIP
Sbjct: 156 TNLVSGLADAMLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSVTKHNYLVLDVDDIP 215
Query: 205 RIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQT 264
RI+ EAFF+ATSGRPGPVLIDIP D+Q + A+PNW+QP +LP +S LPK P+E L
Sbjct: 216 RIVNEAFFLATSGRPGPVLIDIPKDIQQQFAIPNWDQPIRLPGYMSRLPKSPNENHLELI 275
Query: 265 LKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMF 324
++L++ESK PVL VGGGCLNSSEELR+FV LTG+PV T MGLG +P DE L+M+GM
Sbjct: 276 VRLVMESKKPVLYVGGGCLNSSEELRRFVELTGVPVASTLMGLGAYPIADENSLQMLGMH 335
Query: 325 GTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384
GTVYANYAV++ D+LLA GVRF++R+T KLE FA+RAKIVHIDIDS EIGK K P VS+C
Sbjct: 336 GTVYANYAVDKADILLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVC 395
Query: 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILN 444
AD KL +N +LES+GVG DF WREEL+EQK+++P SYKTF +EI PQYAIQ+L+
Sbjct: 396 ADLKLALKGINHMLESRGVGGKLDFRGWREELNEQKRRFPLSYKTFEDEISPQYAIQVLD 455
Query: 445 ELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAI 504
ELT+ + I+STGVGQHQMWA QFY YKR RQ LTS G G+MGFGLPAA+GAAVANPGA+
Sbjct: 456 ELTNG-DAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPGAV 514
Query: 505 VVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDP 564
VVDIDGDGSFIMN+QELA IK E +PVKILL+NNQ+LGM V++EDR++++NRA+++LGDP
Sbjct: 515 VVDIDGDGSFIMNVQELATIKVEKLPVKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDP 574
Query: 565 LRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMI 624
++ IFPDMLKFA+ACGIPAARVTKK+D+RAAIQ ML+TPGPYLLDV+V +QEHV+PMI
Sbjct: 575 SNENAIFPDMLKFADACGIPAARVTKKEDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMI 634
Query: 625 PYDKSFKDTILEDDGR 640
P + +F+D I E DGR
Sbjct: 635 PSNGTFQDVITEGDGR 650
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124370|sp|P27819.1|ILVB3_BRANA RecName: Full=Acetolactate synthase 3, chloroplastic; AltName: Full=ALS III; AltName: Full=Acetohydroxy-acid synthase III; AltName: Full=Acetolactate synthase III; Flags: Precursor gi|17776|emb|CAA77615.1| acetohydroxyacid synthase III [Brassica napus] gi|379030365|dbj|BAL68082.1| acetolactate synthase [Brassica rapa subsp. pekinensis] | Back alignment and taxonomy information |
|---|
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/651 (65%), Positives = 526/651 (80%), Gaps = 17/651 (2%)
Query: 2 ATTLSPPFIFNTP--KSPPTISRPLMPLPYSYNRIKKPS--LH---VTNSTLNIPTSTAP 54
AT+ SP + P KSP ISR LP+S +KPS LH ++ LN P + AP
Sbjct: 4 ATSSSPISLTAKPSSKSPLPISR--FSLPFSLTP-QKPSSRLHRPLAISAVLNSPVNVAP 60
Query: 55 FQQTD----FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IR 109
++TD F SR+APD+PRKGADI+VEALERQGV TVFAYPGGAS+EIHQ+LTRS+ IR
Sbjct: 61 -EKTDKIKTFISRYAPDEPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSTIR 119
Query: 110 SILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVS 169
++LPRHEQGG+FAAEGYARSSG PG+C+ +SGPG TN+++GL DA DS+P++AITGQV
Sbjct: 120 NVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADAMLDSVPLVAITGQVP 179
Query: 170 QKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229
++++GTDAFQE P+VEVTR +TKHNYLV+DVDDIPRI++EAFF+ATSGRPGPVL+D+P D
Sbjct: 180 RRMIGTDAFQETPIVEVTRSITKHNYLVMDVDDIPRIVQEAFFLATSGRPGPVLVDVPKD 239
Query: 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEEL 289
+Q +LA+PNW+QP +LP +S LP+ P+ L Q ++LI ESK PVL VGGG LNSSEEL
Sbjct: 240 IQQQLAIPNWDQPMRLPGYMSRLPQPPEVSQLGQIVRLISESKRPVLYVGGGSLNSSEEL 299
Query: 290 RKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNER 349
+FV LTGIPV T MGLG +PC DEL L+M+GM GTVYANYAV DLLLA GVRF++R
Sbjct: 300 GRFVELTGIPVASTLMGLGSYPCNDELSLQMLGMHGTVYANYAVEHSDLLLAFGVRFDDR 359
Query: 350 MTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDF 409
+T KLE FA+RAKIVHIDIDS EIGK K P VS+C D KL MN +LE++ DF
Sbjct: 360 VTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDF 419
Query: 410 SAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFY 469
WR EL EQK+K+P S+KTFGE IPPQYAIQ+L+ELT + IISTGVGQHQMWA QFY
Sbjct: 420 GVWRSELSEQKQKFPLSFKTFGEAIPPQYAIQVLDELTQG-KAIISTGVGQHQMWAAQFY 478
Query: 470 MYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENI 529
Y++ RQ L+SSG G+MGFGLPAA+GA+VANP AIVVDIDGDGSFIMN+QELA I+ EN+
Sbjct: 479 KYRKPRQWLSSSGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENL 538
Query: 530 PVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589
PVKILL+NNQ+LGM +++EDR+++ANRA+++LGDP R++EIFP+ML+FA ACGIPAARVT
Sbjct: 539 PVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARVT 598
Query: 590 KKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
KK+++R AIQ ML+TPGPYLLDV+ +QEHV+PMIP +FKD I E DGR
Sbjct: 599 KKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGR 649
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124366|sp|P27818.1|ILVB1_BRANA RecName: Full=Acetolactate synthase 1, chloroplastic; AltName: Full=ALS I; AltName: Full=Acetohydroxy-acid synthase I; AltName: Full=Acetolactate synthase I; Flags: Precursor gi|17772|emb|CAA77613.1| actohydroxyacid synthase I [Brassica napus] gi|270567208|gb|ACZ92141.1| acetohydroxyacid synthase [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/652 (65%), Positives = 525/652 (80%), Gaps = 16/652 (2%)
Query: 2 ATTLSPPFIFNTP--KSPPTISRPLMPLPYSYNRIKKPS-LH---VTNSTLNIPTSTAPF 55
AT+ SP + P KSP ISR LP+S K S LH ++ LN P + AP
Sbjct: 4 ATSSSPISLTAKPSSKSPLPISR--FSLPFSLTPQKDSSRLHRPLAISAVLNSPVNVAPP 61
Query: 56 --QQTD----FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-I 108
++TD F SR+APD+PRKGADI+VEALERQGV TVFAYPGGAS+EIHQ+LTRS+ I
Sbjct: 62 SPEKTDKNKTFVSRYAPDEPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSTI 121
Query: 109 RSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQV 168
R++LPRHEQGG+FAAEGYARSSG PG+C+ +SGPG TN+++GL DA DS+P++AITGQV
Sbjct: 122 RNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADAMLDSVPLVAITGQV 181
Query: 169 SQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228
++++GTDAFQE P+VEVTR +TKHNYLV+DVDDIPRI++EAFF+ATSGRPGPVL+D+P
Sbjct: 182 PRRMIGTDAFQETPIVEVTRSITKHNYLVMDVDDIPRIVQEAFFLATSGRPGPVLVDVPK 241
Query: 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEE 288
D+Q +LA+PNW+QP +LP +S LP+ P+ L Q ++LI ESK PVL VGGG LNSSEE
Sbjct: 242 DIQQQLAIPNWDQPMRLPGYMSRLPQPPEVSQLGQIVRLISESKRPVLYVGGGSLNSSEE 301
Query: 289 LRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE 348
L +FV LTGIPV T MGLG +PC DEL L+M+GM GTVYANYAV DLLLA GVRF++
Sbjct: 302 LGRFVELTGIPVASTLMGLGSYPCNDELSLQMLGMHGTVYANYAVEHSDLLLAFGVRFDD 361
Query: 349 RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFD 408
R+T KLE FA+RAKIVHIDIDS EIGK K P VS+C D KL MN +LE++ D
Sbjct: 362 RVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLD 421
Query: 409 FSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQF 468
F WR EL EQK+K+P S+KTFGE IPPQYAIQIL+ELT+ + IISTGVGQHQMWA QF
Sbjct: 422 FGVWRSELSEQKQKFPLSFKTFGEAIPPQYAIQILDELTEG-KAIISTGVGQHQMWAAQF 480
Query: 469 YMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAEN 528
Y Y++ RQ L+SSG G+MGFGLPAA+GA+VANP AIVVDIDGDGSFIMN+QELA I+ EN
Sbjct: 481 YKYRKPRQWLSSSGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVEN 540
Query: 529 IPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV 588
+PVKILL+NNQ+LGM +++EDR+++ANRA+++LGDP R++EIFP+ML+FA ACGIPAARV
Sbjct: 541 LPVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARV 600
Query: 589 TKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
TKK+++R AIQ ML+TPGPYLLDV+ +QEHV+PMIP +FKD I E DGR
Sbjct: 601 TKKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGR 652
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1130684|emb|CAA87084.1| acetohydroxyacid synthase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/626 (66%), Positives = 506/626 (80%), Gaps = 4/626 (0%)
Query: 18 PTISRPLMPLPYSYNRIKKPSLHVTNSTLNIPTSTAPFQQ--TDFSSRFAPDKPRKGADI 75
P + P P PY + H +++ + TS P DF SR+A D+PRKGADI
Sbjct: 32 PFSTTPQKPTPYRSFDVSCSLSHASSNPRSAATSVTPKNAPPHDFISRYADDEPRKGADI 91
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLTRSNI-RSILPRHEQGGIFAAEGYARSSGTPG 134
+VEAL R+GV VFAYPGGAS+EIHQ+LTRS I R++LPRHEQGG+FAAEGYARSSG PG
Sbjct: 92 LVEALVREGVKDVFAYPGGASMEIHQALTRSKIIRNVLPRHEQGGVFAAEGYARSSGIPG 151
Query: 135 VCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHN 194
VC+ +SGPG TN+++GL DA DSIP++AITGQV ++++GTDAFQE P+VEVTR +TKHN
Sbjct: 152 VCIATSGPGATNLVSGLADAMLDSIPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHN 211
Query: 195 YLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPK 254
YLVLDVDDIPRI+ EAFF+A+SGRPGPVLID+P D+Q +LAVP WN +LP +S LPK
Sbjct: 212 YLVLDVDDIPRIVSEAFFLASSGRPGPVLIDVPKDIQQQLAVPKWNHSLRLPGYLSRLPK 271
Query: 255 EPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTD 314
P E L Q ++L+ ESK PVL VGGGCLNSSEEL++FV LTGIPV T MGLG FP +D
Sbjct: 272 APGEAHLEQIVRLVSESKKPVLYVGGGCLNSSEELKRFVELTGIPVASTLMGLGAFPISD 331
Query: 315 ELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374
+L L+M+GM GTVYANYAV++ DLLLA GVRF++R+T KLE FA+RAKIVHIDIDS EIG
Sbjct: 332 DLSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIG 391
Query: 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEI 434
K K P VS+C+D KL +N ILE+K D+S WR+EL+EQK K+P SYKTFGE I
Sbjct: 392 KNKQPHVSVCSDVKLALQGINKILETKVAKLNLDYSEWRQELNEQKLKFPLSYKTFGEAI 451
Query: 435 PPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAM 494
PPQYAIQ+L+ELT IISTGVGQHQMWA QFY YK+ RQ LTS G G+MGFGLPAA+
Sbjct: 452 PPQYAIQVLDELTGG-NAIISTGVGQHQMWAAQFYKYKKPRQWLTSGGLGAMGFGLPAAI 510
Query: 495 GAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554
GAAVANP A+VVDIDGDGSFIMN+QELA I+ EN+PVKILL+NNQ+LGM V++EDR+++A
Sbjct: 511 GAAVANPEAVVVDIDGDGSFIMNVQELATIRVENLPVKILLLNNQHLGMVVQWEDRFYKA 570
Query: 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
NRA+++LGDP +SEIFP+MLKFAEACGIPAARVTKK+D++AA+Q ML+TPGPYLLDV+V
Sbjct: 571 NRAHTYLGDPSNESEIFPNMLKFAEACGIPAARVTKKEDLKAAMQKMLDTPGPYLLDVIV 630
Query: 615 SYQEHVVPMIPYDKSFKDTILEDDGR 640
+QEHV+PMIP +FKD I E DGR
Sbjct: 631 PHQEHVLPMIPSGGAFKDVITEGDGR 656
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357446499|ref|XP_003593527.1| Acetolactate synthase [Medicago truncatula] gi|124360613|gb|ABN08612.1| Thiamine pyrophosphate enzyme, central region [Medicago truncatula] gi|355482575|gb|AES63778.1| Acetolactate synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/637 (65%), Positives = 514/637 (80%), Gaps = 9/637 (1%)
Query: 12 NTPKSPPT------ISRPLMPLPYSYNRIKKPSLHVTNSTLNIPTSTAPFQQTD-FSSRF 64
++P+S P I+ P P + ++ SL ++ S N T P + F SRF
Sbjct: 17 SSPQSLPNQNHVFRITYPFSTYPNTPFKLNHRSLKISASVSNPTQKTTPIPSPEQFISRF 76
Query: 65 APDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAA 123
AP++PRKGADI+VE+LERQGVT VFAYPGGAS+EIHQ+LTRS IR++LPRHEQGGIFAA
Sbjct: 77 APNEPRKGADILVESLERQGVTNVFAYPGGASMEIHQALTRSTAIRNVLPRHEQGGIFAA 136
Query: 124 EGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPV 183
EGYARSSG PGVC+ +SGPG TN+++GL DA DS+P++AITGQV ++++GTDAFQE P+
Sbjct: 137 EGYARSSGLPGVCIATSGPGATNLVSGLADAMLDSVPLIAITGQVPRRMIGTDAFQETPI 196
Query: 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPC 243
VEVTR +TKHNYLVLDVDDIPRI+KEAF +A+SGRPGPVLIDIP D+Q ++++PNW+QP
Sbjct: 197 VEVTRSITKHNYLVLDVDDIPRIVKEAFLLASSGRPGPVLIDIPKDIQQQVSLPNWDQPI 256
Query: 244 KLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCT 303
+L ++ LPK PDE L Q ++L++ESK PVL VGGG LN SEELR+FV LTG+PV T
Sbjct: 257 RLTGYMNRLPKAPDEAHLEQIVRLLLESKKPVLYVGGGSLNCSEELRRFVELTGVPVAST 316
Query: 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKI 363
MGLG +P DE L+M+GM GTVYANYAV++ DLLLA GVRF++R+T KLE FA+RAKI
Sbjct: 317 LMGLGSYPSLDENSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKI 376
Query: 364 VHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKY 423
VHIDID+ EIGK K P VS+C D KL +N ILES G+ DF WREEL++QK ++
Sbjct: 377 VHIDIDAAEIGKNKQPHVSVCGDLKLALKGINQILESNGIERKLDFGGWREELNDQKVRF 436
Query: 424 PFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
P SYKTF E IPPQYAIQ+L+ELT+ E IISTGVGQHQMWA QFY YKR RQ LTS+G
Sbjct: 437 PMSYKTFDEAIPPQYAIQVLDELTNG-EAIISTGVGQHQMWAAQFYRYKRPRQWLTSAGL 495
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G+MGFGLPAAMGAAVANP AIVVDIDGDGSF+MN+QELA IK EN+PVKILL+NNQ+LGM
Sbjct: 496 GAMGFGLPAAMGAAVANPDAIVVDIDGDGSFMMNVQELATIKVENLPVKILLLNNQHLGM 555
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603
V++EDR+++ANRA+++LGDP + EIFP+MLKFA ACGIPAARVTK+ D+RAAIQ ML+
Sbjct: 556 VVQWEDRFYKANRAHTYLGDPANEKEIFPNMLKFAGACGIPAARVTKRADLRAAIQKMLD 615
Query: 604 TPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
TPGPYLLDV+V +QEHV+PMIP + SF+D I E DGR
Sbjct: 616 TPGPYLLDVIVPHQEHVLPMIPANGSFEDVITEGDGR 652
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22450043|emb|CAC86694.1| putative acetolactate synthase [Raphanus raphanistrum] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/582 (69%), Positives = 494/582 (84%), Gaps = 2/582 (0%)
Query: 60 FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQG 118
F SR+APD+PRKGADI+VEALERQGV TVFAYPGGAS+EIHQ+LTRS+ IR++LPRHEQG
Sbjct: 2 FVSRYAPDEPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSTIRNVLPRHEQG 61
Query: 119 GIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAF 178
G+FAAEGYARSSG PG+C+ +SGPG TN+++GL DA DS+P++AITGQV ++++GTDAF
Sbjct: 62 GVFAAEGYARSSGKPGICIATSGPGATNLVSGLADAMLDSVPLVAITGQVPRRMIGTDAF 121
Query: 179 QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPN 238
QE P+VEVTR +TKHNYLV+DVDDIPRI++EAFF+ATSGRPGPVL+D+P D+Q +LA+PN
Sbjct: 122 QETPIVEVTRSITKHNYLVMDVDDIPRIVQEAFFLATSGRPGPVLVDVPKDIQXQLAIPN 181
Query: 239 WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGI 298
W+QP +LP +S LP+ P+ LRQ ++LI ESK PVL VGGG LNSSEEL +FV LTGI
Sbjct: 182 WDQPMRLPGYMSRLPQPPEVSQLRQIVRLISESKRPVLYVGGGSLNSSEELGRFVELTGI 241
Query: 299 PVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358
PV T MGLG +PC DEL L+M+GM GTVYANY+V DLLLA GVRF++R+T KLE FA
Sbjct: 242 PVASTLMGLGSYPCNDELSLQMLGMHGTVYANYSVEHSDLLLAFGVRFDDRVTGKLEAFA 301
Query: 359 TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE 418
+RAKIVHIDIDS EIGK K P VS+C D KL MN ILE++G DF WR EL E
Sbjct: 302 SRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKILENRGEELKLDFGVWRSELSE 361
Query: 419 QKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
QK+K+P S+KTFGE IPPQYAIQ+L+ELTD + IISTGVGQHQMWA QFY Y++ RQ L
Sbjct: 362 QKQKFPLSFKTFGEAIPPQYAIQVLDELTDG-KAIISTGVGQHQMWAAQFYKYRKPRQWL 420
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
+SSG G+MGFGLPAA+GA+VANP AIVVDIDGDGSFIMN+QELA I+ EN+PVKILL+NN
Sbjct: 421 SSSGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKILLLNN 480
Query: 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
Q+LGM +++EDR+++ANRA+++LGDP R+SEIFP+ML+FA ACGIPAARVTKK+++R AI
Sbjct: 481 QHLGMVMQWEDRFYKANRAHTYLGDPARESEIFPNMLQFAGACGIPAARVTKKEELREAI 540
Query: 599 QLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
Q ML+TPGPYLLDV+ +QEHV+PMIP +FKD I E DGR
Sbjct: 541 QTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGR 582
|
Source: Raphanus raphanistrum Species: Raphanus raphanistrum Genus: Raphanus Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 643 | ||||||
| TAIR|locus:2114525 | 670 | CSR1 "chlorsulfuron/imidazolin | 0.979 | 0.940 | 0.631 | 4.7e-220 | |
| TIGR_CMR|GSU_1911 | 566 | GSU_1911 "acetolactate synthas | 0.861 | 0.978 | 0.428 | 5.8e-121 | |
| TIGR_CMR|BA_1850 | 570 | BA_1850 "acetolactate synthase | 0.852 | 0.961 | 0.444 | 7.4e-121 | |
| TIGR_CMR|CHY_0520 | 554 | CHY_0520 "acetolactate synthas | 0.833 | 0.967 | 0.437 | 3.4e-116 | |
| TIGR_CMR|CHY_0517 | 552 | CHY_0517 "acetolactate synthas | 0.832 | 0.969 | 0.427 | 2.6e-109 | |
| TIGR_CMR|BA_1417 | 566 | BA_1417 "acetolactate synthase | 0.844 | 0.959 | 0.416 | 6.3e-108 | |
| TIGR_CMR|SPO_2578 | 583 | SPO_2578 "acetolactate synthas | 0.864 | 0.953 | 0.398 | 1.7e-105 | |
| UNIPROTKB|P0A622 | 618 | ilvB1 "Acetolactate synthase l | 0.850 | 0.885 | 0.415 | 5.3e-104 | |
| TIGR_CMR|DET_0833 | 569 | DET_0833 "acetolactate synthas | 0.852 | 0.963 | 0.405 | 6.7e-104 | |
| TIGR_CMR|CJE_0677 | 566 | CJE_0677 "acetolactate synthas | 0.863 | 0.980 | 0.381 | 1.8e-101 |
| TAIR|locus:2114525 CSR1 "chlorsulfuron/imidazolinone resistant 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2098 (743.6 bits), Expect = 4.7e-220, Sum P(2) = 4.7e-220
Identities = 403/638 (63%), Positives = 496/638 (77%)
Query: 6 SPPFIFNTPKSPPTISRPLMPL--PYSYNRIKKPSLHVTNSTLNIPTSTAPFQQTDFSSR 63
S PF N KS + R + P S + + L+ T + P+ T P + F SR
Sbjct: 35 SLPFSLNPNKSSSSSRRRGIKSSSPSSISAV----LNTTTNVTTTPSPTKPTKPETFISR 90
Query: 64 FAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFA 122
FAPD+PRKGADI+VEALERQGV TVFAYPGGAS+EIHQ+LTRS+ IR++LPRHEQGG+FA
Sbjct: 91 FAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFA 150
Query: 123 AEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIP 182
AEGYARSSG PG+C+ +SGPG TN+++GL DA DS+P++AITGQV ++++GTDAFQE P
Sbjct: 151 AEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETP 210
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
+VEVTR +TKHNYLV+DV+DIPRII+EAFF+ATSGRPGPVL+D+P D+Q +LA+PNW Q
Sbjct: 211 IVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPNWEQA 270
Query: 243 CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTC 302
+LP +S +PK P++ L Q ++LI ESK PVL VGGGCLNSS+EL +FV LTGIPV
Sbjct: 271 MRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGIPVAS 330
Query: 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK 362
T MGLG +PC DEL L M+GM GTVYANYAV DLLLA GVRF++R+T KLE FA+RAK
Sbjct: 331 TLMGLGSYPCDDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAK 390
Query: 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK 422
IVHIDIDS EIGK K P VS+C D KL MN +LE++ DF WR EL+ QK+K
Sbjct: 391 IVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQK 450
Query: 423 YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
+P S+KTFGE IPPQYAI++L+ELTD + IISTGVGQHQMWA QFY YK+ RQ L+S G
Sbjct: 451 FPLSFKTFGEAIPPQYAIKVLDELTDGK-AIISTGVGQHQMWAAQFYNYKKPRQWLSSGG 509
Query: 483 FGSMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
G+MGFGL IVVDIDGDGSFIMN+QELA I+ EN+PVK+LL+NNQ+LG
Sbjct: 510 LGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHLG 569
Query: 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML 602
M +++EDR+++ANRA++FLGDP ++ EIFP+ML FA ACGIPAARVTKK D+R AIQ ML
Sbjct: 570 MVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTML 629
Query: 603 ETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
+TPGPYLLDV+ +QEHV+PMIP +F D I E DGR
Sbjct: 630 DTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGR 667
|
|
| TIGR_CMR|GSU_1911 GSU_1911 "acetolactate synthase, large subunit, biosynthetic type" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
Identities = 244/570 (42%), Positives = 352/570 (61%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARSS 130
GA I++E L+ +GV TVF YPGG I I+ L + IR ILPRHEQ G+ AA+G+AR++
Sbjct: 5 GARILLECLKLEGVDTVFGYPGGTVINIYDELFSFKEIRHILPRHEQAGVHAADGFARAT 64
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GV + +SGPG TN +TG+ AY DSIP++ ITGQV L+G DAFQE+ +V +TR
Sbjct: 65 GRVGVAIATSGPGATNTVTGIATAYMDSIPVVVITGQVPTALIGNDAFQEVDIVGITRPC 124
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TKHN+LV DV DIP IIK+AF+IA +GRPGPVL+D+P DVQ+ A ++ +L S
Sbjct: 125 TKHNFLVKDVKDIPSIIKKAFYIARTGRPGPVLVDLPKDVQIATAEFHYPDSIELRSYKP 184
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCLN--SSEELRKFVGLTGIPVTCTTMGLG 308
++ P ++ + + L++E+K PV+ VGGG ++ ++ EL F +PVT T MGLG
Sbjct: 185 TVEGHPKQI--EKAVSLMLEAKKPVIYVGGGVISGDAAGELYDFAKKLNMPVTTTLMGLG 242
Query: 309 LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDI 368
FP D LR++GM GT YAN AV CD+L A G RF++R+T K+ FA AKI+H+D+
Sbjct: 243 SFPEDDHQALRLLGMHGTYYANMAVTNCDMLFAVGARFDDRVTGKVATFAPHAKIIHVDV 302
Query: 369 DSNEIGKVKLPDVSICADAKLVFNRMNMILESKG---VGFMFDFSAWREELHEQKKKYPF 425
D I K D+ I + K V ++M +LE +G F W E+ K+K+P
Sbjct: 303 DPTSIRKNVRVDLPIVGEVKKVLSQMLKVLEEQGDKVERFRTGIEPWMAEIEGWKQKHPM 362
Query: 426 SYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGS 485
+YK I PQY IQ L EL++ + II+T VGQHQMW QF+ + +AR LL+S G G+
Sbjct: 363 TYKQTTSVIKPQYVIQKLRELSEPD-AIIATDVGQHQMWTAQFFTFTKARTLLSSGGLGT 421
Query: 486 MGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545
MG+GL V+ I GDG F MN+QELA + +PVKI ++NN +LGM
Sbjct: 422 MGYGLPAAMGAQAAYPDRQVIAICGDGGFQMNMQELATLVQNRLPVKICILNNNFLGMVR 481
Query: 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETP 605
++++ +F+ + + + P+ D +K AEA G + +K +V I+ ETP
Sbjct: 482 QWQELFFDRRYSQTCMELPI-------DFIKLAEAFGATGLQASKVDEVEGTIKKAFETP 534
Query: 606 GPYLLDVMVSYQEHVVPMIPYDKSFKDTIL 635
GP +++ ++ +E V+PM+P S + +L
Sbjct: 535 GPVIMEFKIAREEKVLPMVPAGASLNEMVL 564
|
|
| TIGR_CMR|BA_1850 BA_1850 "acetolactate synthase, large subunit, biosynthetic type" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
Identities = 252/567 (44%), Positives = 348/567 (61%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GA +++ L++ GVTTVF YPGGA + ++ +L S ++ IL RHEQ I AAEGYAR+SG
Sbjct: 17 GAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASG 76
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
GV +SGPG TN++TGL DAY DSIP++ ITGQV+ L+G D FQE VV +T +T
Sbjct: 77 KVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVT 136
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
KHNY V DV+ + RI++EAF+IA SGRPGPVLIDIP DVQ+E +N+ ++P
Sbjct: 137 KHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQIEKVTSFYNEVIEIPGY--K 194
Query: 252 LPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGL 309
L PD + LR+ K I E+K P+L +GGG +++ SEEL +F GIPV T MGLG
Sbjct: 195 LEPRPDSMKLREVAKAISEAKRPLLYIGGGIIHADGSEELIQFARKKGIPVVSTLMGLGA 254
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDID 369
+P D L L M+GM GT AN AV ECDLLLA GVRF++R+T KLE F+ +K VHIDID
Sbjct: 255 YPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDID 314
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKT 429
+E K + + D K ++M+L + D W +++ K++Y SYK
Sbjct: 315 PSEFQKNVAVEYPVVGDVK---KALHMLLHMS-IHTQTD--EWLQKVKTWKEEYQLSYKQ 368
Query: 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFG 489
E+ PQ+ I +++ELT+ E I++T VGQHQMWA FY K R LTS G G+MGFG
Sbjct: 369 KESELKPQHVINLVSELTNGE-AIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFG 427
Query: 490 LXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549
+V+ I GD SF MN+QEL I NIPVK+ +INN++LGM ++++
Sbjct: 428 FPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINNKFLGMVRQWQE 487
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609
++E + S +G P D +K AEA G+ R T + + + GP +
Sbjct: 488 MFYENRLSESKIGSP--------DFVKVAEAYGVKGLRATNATEAKQVMLEAFAHKGPVV 539
Query: 610 LDVMVSYQEHVVPMIPYDKSFKDTILE 636
+D V E+V PM+P +K + I++
Sbjct: 540 VDFCVEEGENVFPMVPPNKGNNEMIMK 566
|
|
| TIGR_CMR|CHY_0520 CHY_0520 "acetolactate synthase, large subunit, biosynthetic type" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
Identities = 243/555 (43%), Positives = 347/555 (62%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GA +V+ALE +GVTT+F YPGGA + ++ +L+RS I+ +L RHE G I AA GYAR+SG
Sbjct: 5 GAQALVKALELEGVTTIFGYPGGAVVPLYDALSRSKIQHVLVRHEPGAIHAANGYARASG 64
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
GVC+ +SGPG TN++TG+ AY DS+P++ ITGQV ++GTDAFQE+ + +T +T
Sbjct: 65 KVGVCVATSGPGATNLVTGIATAYMDSVPVVVITGQVPTTMVGTDAFQEVDITGITMPIT 124
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
KHN+LV + DIP ++K+AF+IA +GRPGPVLID+P DV + + ++ +
Sbjct: 125 KHNFLVKNPADIPAVVKKAFYIAATGRPGPVLIDLPKDVAARTIDFQYPEKVEIRGYKPN 184
Query: 252 LPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGL 309
L P ++A + +KLI E+K PV+ GGG L N+S+EL +F IPVT T MGL
Sbjct: 185 LKGHPQKIA--EAVKLIREAKRPVIIAGGGVLAANASQELYEFAVRAEIPVTNTLMGLTS 242
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDID 369
FP L L M+G+ GT YAN AV ECD+L+ GVRF +R+T +L FA +AKI+HID+D
Sbjct: 243 FPQDSPLFLGMLGLHGTRYANLAVTECDVLIGLGVRFADRVTGELSGFAPKAKIIHIDVD 302
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKT 429
EIGK DV I D K V M +E + + W +++ K+++P Y+
Sbjct: 303 PAEIGKNVRADVPIVGDVKNVLQEMLKQIEPQ------NRQEWLSQINTWKQEFPLKYEK 356
Query: 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFG 489
+ I PQ I++L E T +TII+T VGQHQMW QFY +K+ R LTS G G MG+G
Sbjct: 357 -DDFIKPQETIKLLGEKTT-ADTIIATDVGQHQMWTAQFYPFKKPRTFLTSGGLGCMGYG 414
Query: 490 LXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549
L V+ I GDGSF MN+ ELA + +N+ +KI+L N+ LGM + ++
Sbjct: 415 LPAAIGAAVAFRDKQVILITGDGSFQMNMGELATAREQNLSLKIILFVNKKLGMVKQLQE 474
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609
Y AN+ ++ G L PD + A+A GIP ++T+ ++V A+ ML G YL
Sbjct: 475 YY--ANK--NYFGVDLG---FVPDFVALAKAYGIPGRKITRPEEVDGALDEMLAHKGMYL 527
Query: 610 LDVMVSYQEHVVPMI 624
L++ +S +E V+PM+
Sbjct: 528 LEIEISPEEKVLPMV 542
|
|
| TIGR_CMR|CHY_0517 CHY_0517 "acetolactate synthase, large subunit, biosynthetic type" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
Identities = 238/557 (42%), Positives = 336/557 (60%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GA I+++ LE GV TVF YPGGA + I+ +L S I L RHEQG AA+GYAR+SG
Sbjct: 5 GAQILIKVLEDLGVDTVFGYPGGAVLPIYDALYDSKITHYLTRHEQGAAHAADGYARASG 64
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
GVC +SGPG TN++TGL AY DS+P++AITGQV+ LLG D+FQE + +T +T
Sbjct: 65 KVGVCFATSGPGATNLVTGLATAYMDSVPVVAITGQVATSLLGRDSFQEADITGITMPIT 124
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
KHNYLV D ++ + + EAF+IA +GRPGPVLIDIP DV A + + +LP
Sbjct: 125 KHNYLVKDPGELAQTVVEAFYIARTGRPGPVLIDIPKDVSAARARYEFPEKVELPGYKPV 184
Query: 252 LPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEE--LRKFVGLTGIPVTCTTMGLGL 309
L P E + + + LI S+ P++ GGG +N+ E L F PV + MGLG
Sbjct: 185 LT--PGEEEVNKAIALINSSERPLIFSGGGTVNAGAEQLLLAFAEKINAPVVASLMGLGG 242
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDID 369
FP L L M+GM GT ANYAV+ECD+L+A GVRF++R+T ++ FA AKIVHIDID
Sbjct: 243 FPGDHPLFLGMLGMHGTKPANYAVSECDVLIAVGVRFDDRVTGDVKSFAPNAKIVHIDID 302
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY-K 428
EI K L +V + D K N + +++ KGV W + + K+KYP +Y +
Sbjct: 303 PAEINKNVLVEVPLVGDVK---NSLELLI--KGVKEKKP-EKWLKYVFGLKEKYPLTYNR 356
Query: 429 TFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGF 488
G + PQ I+ L ++T E II T VGQHQMWA QFY + + R+ ++S G G+MGF
Sbjct: 357 ECG--LKPQKVIETLYKITGGE-AIIVTDVGQHQMWAAQFYKFNKPRRFISSGGLGTMGF 413
Query: 489 GLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYE 548
GL V+ + GDGS MN QEL + A NIPVK++++NN YLGM +++
Sbjct: 414 GLPAGIGAQVARPEQQVIVVSGDGSIQMNSQELMTVAAYNIPVKVIILNNGYLGMVRQWQ 473
Query: 549 DRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPY 608
+ + + +++ L +P D +K A+A GI R+ K++++ + + GP
Sbjct: 474 ELFHQRRYSHTELKNP--------DFVKLADAYGIRGLRIKKEENLEEKLLEAINYAGPV 525
Query: 609 LLDVMVSYQEHVVPMIP 625
++DV V +E+V PM+P
Sbjct: 526 VVDVWVDREENVFPMVP 542
|
|
| TIGR_CMR|BA_1417 BA_1417 "acetolactate synthase, large subunit, biosynthetic type" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
Identities = 233/560 (41%), Positives = 330/560 (58%)
Query: 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGY 126
+K GA +++EALE++GV +F YPGGA + ++ +L I IL RHEQG I AAEGY
Sbjct: 7 EKLATGAQLLLEALEKEGVEVIFGYPGGAVLPLYDALYDCEIPHILTRHEQGAIHAAEGY 66
Query: 127 ARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEV 186
AR +G PGV + +SGPG TN++TGL DA DS+P++ TGQV+ L+G+DAFQE ++ +
Sbjct: 67 ARITGNPGVVIATSGPGATNVITGLADAMIDSLPLVVFTGQVATTLIGSDAFQEADIMGL 126
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
T +TKHNY V D+PRIIKEAF IA +GRPGPV+ID+P D+ +E + LP
Sbjct: 127 TMPVTKHNYQVRKASDLPRIIKEAFHIARTGRPGPVVIDLPKDMVVEQGERCSDVQMDLP 186
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTT 304
+ EP+ L + + L+ I + P++ G G L++ S+EL F IPV T
Sbjct: 187 GYNPNY--EPNLLQINKLLQAIQVANKPLILAGAGVLHAKASKELTSFARKYEIPVVHTL 244
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
+GLG FP DEL L M GM G+ AN A+ EC+LL+ G RF++R+T L FA A +
Sbjct: 245 LGLGGFPPDDELFLGMGGMHGSYTANMALYECNLLINIGARFDDRLTGNLAYFAKEATVA 304
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
HIDID EIGK ++ I A AK + ++L+ +G + W L +K+KYP
Sbjct: 305 HIDIDPAEIGKNVPTEIPIVASAK---QALQVLLQPEGR--KENHHEWISLLKNRKEKYP 359
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFG 484
FSYK E I PQYAI +L E+T E I++T VGQHQMWA Q+Y K + +TS G G
Sbjct: 360 FSYKRNSESIKPQYAIDMLYEITKGE-AIVTTDVGQHQMWAAQYYPLKTPDKWVTSGGLG 418
Query: 485 SMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544
+MGFG +V+ I GD F M LQEL+ +K ++PVK+ ++NN+ LGM
Sbjct: 419 TMGFGFPAAIGAQIAKPDELVIAIVGDAGFQMTLQELSVLKEHSLPVKVFILNNEALGMV 478
Query: 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET 604
+++D ++ ++S L PD + A A GI R+ + +Q +E
Sbjct: 479 RQWQDEFYNQRYSHSLLSCQ-------PDFVALANAYGIKGVRIDDPLLAKKQLQHAIEL 531
Query: 605 PGPYLLDVMVSYQEHVVPMI 624
P ++D V E V+PM+
Sbjct: 532 QEPVVIDCRVLQSEKVMPMV 551
|
|
| TIGR_CMR|SPO_2578 SPO_2578 "acetolactate synthase, large subunit, biosynthetic type" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 228/572 (39%), Positives = 332/572 (58%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS 130
GA ++V+AL+ QGV TVF YPGGA + I+ + N IR IL RHEQG + AAEGYARS+
Sbjct: 7 GAKMVVQALKDQGVDTVFGYPGGAVLPIYDEIFLQNDIRHILVRHEQGAVHAAEGYARST 66
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G PGV LV+SGPG TN +TGL DA DSIP++ +TGQV ++G+DAFQE V +TR
Sbjct: 67 GKPGVVLVTSGPGATNAVTGLTDALLDSIPLVVLTGQVPTFMIGSDAFQEADTVGITRPC 126
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TKHN+LV + D + + I E F +ATSGRPGPVLIDIP DVQ A + P L S +
Sbjct: 127 TKHNWLVKETDKLAKTIHEGFHVATSGRPGPVLIDIPKDVQF--ATGQYQGPKGLTSHYN 184
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS----SEELRKFVGLTGIPVTCTTMG 306
P + D + + + I ++K PV GGG +NS S+ LR+ V TG P+T T MG
Sbjct: 185 P-PVKGDMEEITELVAAIEKAKRPVFYTGGGVINSGPAASQLLRELVDATGFPITSTLMG 243
Query: 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHI 366
LG +P + + L M+GM G AN A++ CDL++ G RF++R+T +++ F+ ++K HI
Sbjct: 244 LGAYPASGKNWLGMLGMHGLYEANMAMHGCDLMINIGARFDDRITGRIDAFSPKSKKAHI 303
Query: 367 DIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFD-FSAWREELHEQKKKYPF 425
DID + I KV D+ I D V + + +++G + W+ ++ E +K
Sbjct: 304 DIDPSSINKVIRVDIPIVGDVGHVLEDILKVWKARGRKTNAEAVQKWQAQITEWRKVSCL 363
Query: 426 SYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGS 485
+YK + I PQYA++ L LT + + T VGQHQMWA Q+ ++ + +TS G G+
Sbjct: 364 TYKPSEKTIKPQYALERLEALTKGRDRYVCTEVGQHQMWAAQYLGFEDPNRWMTSGGLGT 423
Query: 486 MGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545
MG+G +V+++ G+ S++MN+QE+ +PVK ++NN+ LGM
Sbjct: 424 MGYGFPASIGVQMAHPDALVINVAGEASWLMNMQEMGTAVQYRLPVKQFILNNERLGMVR 483
Query: 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETP 605
++++ + S+ SE PD +K AEA G D+ AI ML
Sbjct: 484 QWQELLHGERYSQSW-------SEALPDFVKLAEAFGAKGILCKDPADLDDAIMEMLNYD 536
Query: 606 GPYLLDVMVSYQEHVVPMIPYDKSFKDTILED 637
GP + D +V E+ PMIP K+ + +L D
Sbjct: 537 GPVIFDCLVEKHENCFPMIPSGKAHNEMLLGD 568
|
|
| UNIPROTKB|P0A622 ilvB1 "Acetolactate synthase large subunit IlvB1" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 232/558 (41%), Positives = 314/558 (56%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS 130
GA ++ +LE GV +F PGGA + ++ L S +R +L RHEQG AA GYA +
Sbjct: 40 GAQAVIRSLEELGVDVIFGIPGGAVLPVYDPLFDSKKLRHVLVRHEQGAGHAASGYAHVT 99
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVC+ +SGPG TN++T L DA DSIP++AITGQV + L+GTDAFQE + +T +
Sbjct: 100 GRVGVCMATSGPGATNLVTPLADAQMDSIPVVAITGQVGRGLIGTDAFQEADISGITMPI 159
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TKHN+LV DDIPR++ EAF IA SGRPG VL+DIP DV +W +LP
Sbjct: 160 TKHNFLVRSGDDIPRVLAEAFHIAASGRPGAVLVDIPKDVLQGQCTFSWPPRMELPGYKP 219
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCLN--SSEELRKFVGLTGIPVTCTTMGLG 308
+ +P +R+ KLI ++ PVL VGGG + ++E+LR+ LTGIPV T M G
Sbjct: 220 NT--KPHSRQVREAAKLIAAARKPVLYVGGGVIRGEATEQLRELAELTGIPVVTTLMARG 277
Query: 309 LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDI 368
FP + L M GM GTV A A+ DLL+A G RF++R+T KL+ FA AK++H DI
Sbjct: 278 AFPDSHRQNLGMPGMHGTVAAVAALQRSDLLIALGTRFDDRVTGKLDSFAPEAKVIHADI 337
Query: 369 DSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK 428
D EIGK + DV I D K V + +L + + + W L+ +K YP SY
Sbjct: 338 DPAEIGKNRHADVPIVGDVKAVITELIAMLRHHHIPGTIEMADWWAYLNGVRKTYPLSYG 397
Query: 429 TFGE-EIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
+ + P+Y I+ L E+ + ++ GVGQHQMWA QF Y++ R L S G G+MG
Sbjct: 398 PQSDGSLSPEYVIEKLGEIAGPDAVFVA-GVGQHQMWAAQFIRYEKPRSWLNSGGLGTMG 456
Query: 488 FGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547
F + V IDGDG F M QELA E IPVK+ LINN LGM ++
Sbjct: 457 FAIPAAMGAKIALPGTEVWAIDGDGCFQMTNQELATCAVEGIPVKVALINNGNLGMVRQW 516
Query: 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI-QLMLETPG 606
+ ++ A R + D S PD +K AEA G R +++DV I Q
Sbjct: 517 QSLFY-AERYSQT--DLATHSHRIPDFVKLAEALGCVGLRCEREEDVVDVINQARAINDC 573
Query: 607 PYLLDVMVSYQEHVVPMI 624
P ++D +V V PM+
Sbjct: 574 PVVIDFIVGADAQVWPMV 591
|
|
| TIGR_CMR|DET_0833 DET_0833 "acetolactate synthase, large subunit, biosynthetic type" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
Identities = 231/569 (40%), Positives = 330/569 (57%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSS 130
GA I+ E+L ++G +F YPGG + ++ + + +R IL RHEQG AA+G+AR +
Sbjct: 5 GAQIVCESLLKEGADVIFGYPGGVLLPLYDTFPQYPALRHILTRHEQGAAHAADGFARVT 64
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVCL +SGPG TN++TG+ +AY DSIP++AITGQV++ L+G DAFQEI + +T +
Sbjct: 65 GKVGVCLATSGPGATNLITGIANAYMDSIPMVAITGQVTRNLIGKDAFQEIDITGITLPI 124
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TK NYLV + IKEAF++A +GRPGPVLIDIP DV +E A + LP
Sbjct: 125 TKQNYLVTRASALADTIKEAFYLARTGRPGPVLIDIPKDVFIEQAEFEYPDEPDLPGYKP 184
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGLTGIPVTCTTMGLG 308
+ + + + +++ KLI ++ PV+ G G ++EEL+ +PV T +G+
Sbjct: 185 VI--KGNLMQIQKAAKLIETAEKPVIIAGHGVNISGANEELKTLAENCQLPVITTLLGVS 242
Query: 309 LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDI 368
FP L M+GM G YAN AV DL++A G+RF++R+T KL FA A ++HIDI
Sbjct: 243 SFPEDHILSYGMLGMHGMAYANMAVAATDLIVAIGMRFDDRVTGKLSAFAPHASVIHIDI 302
Query: 369 DSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK 428
D EIGK DV I D K V +N +E S W +L ++++P
Sbjct: 303 DPAEIGKNIRVDVPIVGDVKTVLKSLNKQVEC------VQHSEWLRQLENWRREHPPLSI 356
Query: 429 TFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGF 488
+ I PQY +Q ++E T I+ TGVGQHQMWA Q Y Y R L+TS G G+MGF
Sbjct: 357 RHTDLILPQYIVQQISEATSGN-AIVVTGVGQHQMWAAQHYTYIRPNSLVTSGGLGTMGF 415
Query: 489 GLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYE 548
L V I GDG F MN+QELA I E VKI + NN YLGM +++
Sbjct: 416 DLPAALGAKVGCPDETVWCIAGDGGFQMNMQELATIVQERAAVKIAVFNNGYLGMVRQWQ 475
Query: 549 DRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPY 608
D ++ N ++ PL PD +K AEA IPA V +K++VR AI+ + T GP+
Sbjct: 476 DLFYNKN----YVATPLG----CPDFIKIAEAYDIPALNVKRKEEVRPAIEQAMATEGPF 527
Query: 609 LLDVMVSYQEHVVPMIPYDKSFKDTILED 637
L++ ++ +E+V PM+P + + +LE+
Sbjct: 528 LINFIIEPEENVYPMVPPGAALHE-VLEE 555
|
|
| TIGR_CMR|CJE_0677 CJE_0677 "acetolactate synthase, large subunit, biosynthetic type" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
Identities = 218/571 (38%), Positives = 322/571 (56%)
Query: 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGY 126
K G+ +I EAL+ + V VF YPGGA++ I+ + + + IL RHEQ + AA+ Y
Sbjct: 2 KELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFKHILVRHEQAALHAADAY 61
Query: 127 ARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEV 186
AR SG GV +V+SGPG TN +TGL AYSDSIP++ I+GQV+ L+GTDAFQEI V +
Sbjct: 62 ARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQVANSLIGTDAFQEIDAVGI 121
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
+R KHNYLV +++ PRI+KEAF+IA SGRPGPV ID+P DV L + W ++
Sbjct: 122 SRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHIDVPKDVSATLGL--WEYSKEIS 179
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304
+ + +++ +L+ E+K P+ +GGGC+ N+SE++R+ + T IP T
Sbjct: 180 MKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISSNASEQIRELIKFTKIPAVETL 239
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
M LG D L+M GM G+ AN A++ECDLL++ G RF++R+T K +FA A IV
Sbjct: 240 MALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVSVGARFDDRITGKTSEFAKHATIV 299
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
H+DID + I K+ I D K V + + E K F F W E L + YP
Sbjct: 300 HVDIDPSSISKIINAHYPIVGDIKEVLKEL--LEELKKENFNTTFKEWHETLKRYNELYP 357
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFG 484
SY+ E + PQ+ I+ ++ D I T VGQHQMW QFY + RQL TS G G
Sbjct: 358 LSYEDSNEILKPQWVIEECAKMAPDARII--TDVGQHQMWVAQFYPFNYPRQLATSGGQG 415
Query: 485 SMGFGLXXXXXXXXXXXXXIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544
+MG+ L +V++ GDGS +MN+QEL I +++NN +LGM
Sbjct: 416 TMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQELMTAYEYGIKTINIILNNAFLGMV 475
Query: 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET 604
+++ +++ + + + L PD +K A+ G ++ K++ A L++
Sbjct: 476 RQWQSMFYKEHFSQTDLSTQ-------PDFIKIAQGFGCEGYEISNKEEFIQAFSQALKS 528
Query: 605 PGPYLLDVMVSYQEHVVPMIPYDKSFKDTIL 635
LL+V + E V+PM+P + + IL
Sbjct: 529 DKTSLLNVKIDRFEDVLPMVPAGGAIYNMIL 559
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7U5G1 | ILVB_SYNPX | 2, ., 2, ., 1, ., 6 | 0.4007 | 0.8460 | 0.8816 | yes | no |
| O85293 | ILVI_BUCAP | 2, ., 2, ., 1, ., 6 | 0.3756 | 0.8413 | 0.9474 | yes | no |
| Q6K2E8 | ILVB1_ORYSJ | 2, ., 2, ., 1, ., 6 | 0.6385 | 0.9004 | 0.8990 | yes | no |
| Q41769 | ILVB2_MAIZE | 2, ., 2, ., 1, ., 6 | 0.6368 | 0.9004 | 0.9075 | N/A | no |
| Q41768 | ILVB1_MAIZE | 2, ., 2, ., 1, ., 6 | 0.6385 | 0.9004 | 0.9075 | N/A | no |
| P09114 | ILVB2_TOBAC | 2, ., 2, ., 1, ., 6 | 0.6425 | 0.9626 | 0.9322 | N/A | no |
| Q89AP7 | ILVI_BUCBP | 2, ., 2, ., 1, ., 6 | 0.3552 | 0.8398 | 0.9375 | yes | no |
| P14874 | ILVB2_BRANA | 2, ., 2, ., 1, ., 6 | 0.6283 | 0.9704 | 0.9795 | N/A | no |
| O08353 | ILVB_METAO | 2, ., 2, ., 1, ., 6 | 0.4021 | 0.8242 | 0.8848 | yes | no |
| P57321 | ILVI_BUCAI | 2, ., 2, ., 1, ., 6 | 0.3747 | 0.8351 | 0.9404 | yes | no |
| P42463 | ILVB_CORGL | 2, ., 2, ., 1, ., 6 | 0.4163 | 0.8942 | 0.9185 | yes | no |
| P45261 | ILVI_HAEIN | 2, ., 2, ., 1, ., 6 | 0.3680 | 0.8646 | 0.9703 | yes | no |
| P17597 | ILVB_ARATH | 2, ., 2, ., 1, ., 6 | 0.6855 | 0.9020 | 0.8656 | yes | no |
| O33112 | ILVB_MYCLE | 2, ., 2, ., 1, ., 6 | 0.4093 | 0.9035 | 0.9296 | yes | no |
| P09342 | ILVB1_TOBAC | 2, ., 2, ., 1, ., 6 | 0.665 | 0.9237 | 0.8905 | N/A | no |
| Q59498 | ILVB_MYCAV | 2, ., 2, ., 1, ., 6 | 0.4091 | 0.8615 | 0.8921 | yes | no |
| O78518 | ILVB_GUITH | 2, ., 2, ., 1, ., 6 | 0.3922 | 0.8584 | 0.96 | yes | no |
| P36620 | ILVB_SCHPO | 2, ., 2, ., 1, ., 6 | 0.3882 | 0.8600 | 0.8266 | yes | no |
| Q57725 | ILVB_METJA | 2, ., 2, ., 1, ., 6 | 0.4247 | 0.8429 | 0.9170 | yes | no |
| Q02137 | ILVB_LACLA | 2, ., 2, ., 1, ., 6 | 0.4120 | 0.8429 | 0.9426 | yes | no |
| P27818 | ILVB1_BRANA | 2, ., 2, ., 1, ., 6 | 0.6549 | 0.9891 | 0.9709 | N/A | no |
| P27819 | ILVB3_BRANA | 2, ., 2, ., 1, ., 6 | 0.6559 | 0.9860 | 0.9723 | N/A | no |
| P37251 | ILVB_BACSU | 2, ., 2, ., 1, ., 6 | 0.4290 | 0.8444 | 0.9459 | yes | no |
| P0A623 | ILVB_MYCBO | 2, ., 2, ., 1, ., 6 | 0.4283 | 0.8506 | 0.8851 | yes | no |
| P0A622 | ILVB1_MYCTU | 2, ., 2, ., 1, ., 6 | 0.4283 | 0.8506 | 0.8851 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| grail3.0005029001 | acetolactate synthase I/II/III large subunit (EC-2.2.1.6) (651 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_fgenesh4_pg.C_1240037 | hypothetical protein (525 aa) | • | • | • | • | • | 0.994 | ||||
| gw1.V.3049.1 | 2-isopropylmalate synthase (EC-2.3.3.13) (545 aa) | • | • | • | • | • | 0.994 | ||||
| estExt_fgenesh4_pg.C_280257 | threonine deaminase (EC-4.3.1.19) (543 aa) | • | • | • | • | • | 0.991 | ||||
| gw1.I.272.1 | hypothetical protein; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-iso [...] (382 aa) | • | • | • | • | 0.990 | |||||
| estExt_fgenesh4_pg.C_LG_IV0521 | hypothetical protein (589 aa) | • | • | • | • | • | 0.986 | ||||
| estExt_fgenesh4_pm.C_LG_III0598 | hypothetical protein (605 aa) | • | • | • | • | 0.970 | |||||
| estExt_fgenesh4_pg.C_LG_I0451 | hypothetical protein (611 aa) | • | • | • | • | 0.969 | |||||
| gw1.VII.445.1 | hypothetical protein (410 aa) | • | • | • | • | 0.953 | |||||
| gw1.VIII.1377.1 | hypothetical protein (414 aa) | • | • | • | • | 0.953 | |||||
| gw1.X.1439.1 | hypothetical protein (415 aa) | • | • | • | • | 0.945 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 643 | |||
| PLN02470 | 585 | PLN02470, PLN02470, acetolactate synthase | 0.0 | |
| COG0028 | 550 | COG0028, IlvB, Thiamine pyrophosphate-requiring en | 0.0 | |
| PRK08978 | 548 | PRK08978, PRK08978, acetolactate synthase 2 cataly | 0.0 | |
| TIGR00118 | 558 | TIGR00118, acolac_lg, acetolactate synthase, large | 0.0 | |
| PRK09107 | 595 | PRK09107, PRK09107, acetolactate synthase 3 cataly | 0.0 | |
| PRK08527 | 563 | PRK08527, PRK08527, acetolactate synthase 3 cataly | 0.0 | |
| PRK06048 | 561 | PRK06048, PRK06048, acetolactate synthase 3 cataly | 0.0 | |
| PRK07710 | 571 | PRK07710, PRK07710, acetolactate synthase catalyti | 0.0 | |
| PRK06725 | 570 | PRK06725, PRK06725, acetolactate synthase 3 cataly | 0.0 | |
| PRK07789 | 612 | PRK07789, PRK07789, acetolactate synthase 1 cataly | 0.0 | |
| CHL00099 | 585 | CHL00099, ilvB, acetohydroxyacid synthase large su | 0.0 | |
| PRK07418 | 616 | PRK07418, PRK07418, acetolactate synthase 3 cataly | 0.0 | |
| PRK06276 | 586 | PRK06276, PRK06276, acetolactate synthase catalyti | 1e-179 | |
| PRK08155 | 564 | PRK08155, PRK08155, acetolactate synthase catalyti | 1e-175 | |
| PRK07282 | 566 | PRK07282, PRK07282, acetolactate synthase catalyti | 1e-164 | |
| PRK06466 | 574 | PRK06466, PRK06466, acetolactate synthase 3 cataly | 1e-154 | |
| PRK06965 | 587 | PRK06965, PRK06965, acetolactate synthase 3 cataly | 1e-152 | |
| PRK08979 | 572 | PRK08979, PRK08979, acetolactate synthase 3 cataly | 1e-145 | |
| PRK07979 | 574 | PRK07979, PRK07979, acetolactate synthase 3 cataly | 1e-143 | |
| PRK06882 | 574 | PRK06882, PRK06882, acetolactate synthase 3 cataly | 1e-142 | |
| PRK06456 | 572 | PRK06456, PRK06456, acetolactate synthase catalyti | 1e-123 | |
| PRK11269 | 591 | PRK11269, PRK11269, glyoxylate carboligase; Provis | 3e-99 | |
| PRK08322 | 547 | PRK08322, PRK08322, acetolactate synthase; Reviewe | 7e-95 | |
| TIGR01504 | 588 | TIGR01504, glyox_carbo_lig, glyoxylate carboligase | 4e-90 | |
| cd02015 | 186 | cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) fa | 7e-89 | |
| COG3960 | 592 | COG3960, COG3960, Glyoxylate carboligase [General | 1e-86 | |
| PRK08266 | 542 | PRK08266, PRK08266, hypothetical protein; Provisio | 2e-83 | |
| PRK08199 | 557 | PRK08199, PRK08199, thiamine pyrophosphate protein | 2e-80 | |
| PRK08617 | 552 | PRK08617, PRK08617, acetolactate synthase; Reviewe | 3e-74 | |
| TIGR02418 | 539 | TIGR02418, acolac_catab, acetolactate synthase, ca | 1e-73 | |
| PRK06457 | 549 | PRK06457, PRK06457, pyruvate dehydrogenase; Provis | 2e-71 | |
| PRK08611 | 576 | PRK08611, PRK08611, pyruvate oxidase; Provisional | 2e-71 | |
| PRK06112 | 578 | PRK06112, PRK06112, acetolactate synthase catalyti | 4e-67 | |
| PRK07064 | 544 | PRK07064, PRK07064, hypothetical protein; Provisio | 6e-67 | |
| cd07035 | 155 | cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) bindin | 1e-66 | |
| PRK07525 | 588 | PRK07525, PRK07525, sulfoacetaldehyde acetyltransf | 8e-62 | |
| pfam02776 | 172 | pfam02776, TPP_enzyme_N, Thiamine pyrophosphate en | 2e-61 | |
| TIGR03457 | 579 | TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acety | 5e-61 | |
| PRK07524 | 535 | PRK07524, PRK07524, hypothetical protein; Provisio | 6e-59 | |
| PRK09124 | 574 | PRK09124, PRK09124, pyruvate dehydrogenase; Provis | 1e-56 | |
| TIGR02720 | 575 | TIGR02720, pyruv_oxi_spxB, pyruvate oxidase | 2e-54 | |
| PRK06154 | 565 | PRK06154, PRK06154, hypothetical protein; Provisio | 3e-54 | |
| pfam02775 | 151 | pfam02775, TPP_enzyme_C, Thiamine pyrophosphate en | 1e-53 | |
| PRK06546 | 578 | PRK06546, PRK06546, pyruvate dehydrogenase; Provis | 5e-52 | |
| pfam00205 | 136 | pfam00205, TPP_enzyme_M, Thiamine pyrophosphate en | 2e-47 | |
| cd00568 | 168 | cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) | 3e-47 | |
| PRK05858 | 542 | PRK05858, PRK05858, hypothetical protein; Provisio | 3e-46 | |
| TIGR03254 | 554 | TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase | 8e-43 | |
| PRK08273 | 597 | PRK08273, PRK08273, thiamine pyrophosphate protein | 1e-42 | |
| cd07039 | 164 | cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding dom | 2e-41 | |
| cd02014 | 178 | cd02014, TPP_POX, Thiamine pyrophosphate (TPP) fam | 2e-37 | |
| COG3962 | 617 | COG3962, COG3962, Acetolactate synthase [Amino aci | 2e-37 | |
| COG3961 | 557 | COG3961, COG3961, Pyruvate decarboxylase and relat | 2e-37 | |
| PRK09259 | 569 | PRK09259, PRK09259, putative oxalyl-CoA decarboxyl | 1e-34 | |
| PRK08327 | 569 | PRK08327, PRK08327, acetolactate synthase catalyti | 2e-34 | |
| cd06586 | 154 | cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding | 5e-32 | |
| cd02010 | 177 | cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) fam | 3e-28 | |
| cd02002 | 178 | cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa | 2e-26 | |
| PRK07524 | 535 | PRK07524, PRK07524, hypothetical protein; Provisio | 1e-21 | |
| cd02004 | 172 | cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate | 9e-21 | |
| cd02006 | 202 | cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) fam | 5e-17 | |
| TIGR03394 | 535 | TIGR03394, indol_phenyl_DC, indolepyruvate/phenylp | 8e-17 | |
| PRK07092 | 530 | PRK07092, PRK07092, benzoylformate decarboxylase; | 1e-16 | |
| TIGR03393 | 539 | TIGR03393, indolpyr_decarb, indolepyruvate decarbo | 2e-16 | |
| cd02013 | 196 | cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP | 6e-16 | |
| cd02003 | 205 | cd02003, TPP_IolD, Thiamine pyrophosphate (TPP) fa | 7e-16 | |
| cd02005 | 183 | cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP | 3e-15 | |
| PRK07586 | 514 | PRK07586, PRK07586, hypothetical protein; Validate | 4e-15 | |
| cd07037 | 162 | cd07037, TPP_PYR_MenD, Pyrimidine (PYR) binding do | 2e-12 | |
| PRK07092 | 530 | PRK07092, PRK07092, benzoylformate decarboxylase; | 1e-11 | |
| PRK12474 | 518 | PRK12474, PRK12474, hypothetical protein; Provisio | 9e-11 | |
| TIGR00173 | 430 | TIGR00173, menD, 2-succinyl-5-enolpyruvyl-6-hydrox | 1e-10 | |
| PRK12474 | 518 | PRK12474, PRK12474, hypothetical protein; Provisio | 1e-09 | |
| cd03372 | 179 | cd03372, TPP_ComE, Thiamine pyrophosphate (TPP) fa | 2e-09 | |
| TIGR03297 | 361 | TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarb | 2e-09 | |
| TIGR03846 | 181 | TIGR03846, sulfopy_beta, sulfopyruvate decarboxyla | 4e-09 | |
| cd03371 | 188 | cd03371, TPP_PpyrDC, Thiamine pyrophosphate (TPP) | 5e-09 | |
| cd07038 | 162 | cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) b | 6e-09 | |
| PLN02980 | 1655 | PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ | 1e-08 | |
| cd02001 | 157 | cd02001, TPP_ComE_PpyrDC, Thiamine pyrophosphate ( | 3e-08 | |
| PRK06163 | 202 | PRK06163, PRK06163, hypothetical protein; Provisio | 4e-08 | |
| PRK07586 | 514 | PRK07586, PRK07586, hypothetical protein; Validate | 1e-06 | |
| PLN02573 | 578 | PLN02573, PLN02573, pyruvate decarboxylase | 3e-05 | |
| cd03375 | 193 | cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP fa | 5e-05 | |
| cd02008 | 178 | cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TP | 3e-04 | |
| TIGR03182 | 315 | TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E | 6e-04 | |
| COG1165 | 566 | COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexad | 9e-04 | |
| cd02009 | 175 | cd02009, TPP_SHCHC_synthase, Thiamine pyrophosphat | 0.001 | |
| PLN02573 | 578 | PLN02573, PLN02573, pyruvate decarboxylase | 0.003 |
| >gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase | Back alignment and domain information |
|---|
Score = 996 bits (2578), Expect = 0.0
Identities = 401/583 (68%), Positives = 484/583 (83%), Gaps = 3/583 (0%)
Query: 59 DFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQ 117
F SRFAPD+PRKGADI+VEALER+GV TVFAYPGGAS+EIHQ+LTRSN IR++L RHEQ
Sbjct: 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQ 61
Query: 118 GGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA 177
G +FAAEGYA++SG GVC+ +SGPG TN++TGL DA DS+P++AITGQV ++++GTDA
Sbjct: 62 GEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGTDA 121
Query: 178 FQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVP 237
FQE P+VEVTR +TKHNYLV+DV+DIPR+I+EAFF+A+SGRPGPVL+DIP D+Q +LAVP
Sbjct: 122 FQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDIQQQLAVP 181
Query: 238 NWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTG 297
NWNQP KLP +S LPK P++ L Q ++LI ESK PV+ VGGGCLNSSEELR+FV LTG
Sbjct: 182 NWNQPMKLPGYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCLNSSEELREFVELTG 241
Query: 298 IPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDF 357
IPV T MGLG FP +DEL L+M+GM GTVYANYAV+ DLLLA GVRF++R+T KLE F
Sbjct: 242 IPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVTGKLEAF 301
Query: 358 ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELH 417
A+RA IVHIDID EIGK K P VS+CAD KL +N +LE + DFSAWR EL
Sbjct: 302 ASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLEERKAKRP-DFSAWRAELD 360
Query: 418 EQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQL 477
EQK+K+P SY TFG+ IPPQYAIQ+L+ELTD IISTGVGQHQMWA Q+Y YK R+
Sbjct: 361 EQKEKFPLSYPTFGDAIPPQYAIQVLDELTDG-NAIISTGVGQHQMWAAQWYKYKEPRRW 419
Query: 478 LTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537
LTS G G+MGFGLPAA+GAA ANP AIVVDIDGDGSFIMN+QELA I EN+PVKI+++N
Sbjct: 420 LTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIMVLN 479
Query: 538 NQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAA 597
NQ+LGM V++EDR+++ANRA+++LGDP ++EIFPD LKFAE C IPAARVT+K D+R A
Sbjct: 480 NQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTRKSDLREA 539
Query: 598 IQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
IQ ML+TPGPYLLDV+V +QEHV+PMIP +FKD I E DGR
Sbjct: 540 IQKMLDTPGPYLLDVIVPHQEHVLPMIPGGGTFKDIITEGDGR 582
|
Length = 585 |
| >gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 616 bits (1590), Expect = 0.0
Identities = 254/564 (45%), Positives = 342/564 (60%), Gaps = 24/564 (4%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARS 129
GA+ +VEALE GV TVF PGG+ + ++ +L S IR IL RHEQG FAA+GYAR+
Sbjct: 2 MTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYARA 61
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
+G PGVCLV+SGPG TN++TGL DAY DS+P+LAITGQV L+GTDAFQE+ V + R
Sbjct: 62 TGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRP 121
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
+TK+N+ V +DIP ++ AF IA SGRPGPV++D+P DV A +P LP
Sbjct: 122 ITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILP--- 178
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGL 307
P P A+R+ +L+ E+K PV+ GGG + SEELR+ G PV T MG
Sbjct: 179 PYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMGK 238
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G P L L M+GM GT AN A+ E DLLLA G RF++R+T FA A I+HID
Sbjct: 239 GAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG-YSGFAPPAAIIHID 297
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKY-PFS 426
ID EIGK DV I DAK + L+ + +AW EEL E + Y +
Sbjct: 298 IDPAEIGKNYPVDVPIVGDAKATLEALLEELKPE-------RAAWLEELLEARAAYRDLA 350
Query: 427 YKT-FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGS 485
+ + I PQY I++L EL D + I+ T VGQHQMWA +++ + R R+ LTS G G+
Sbjct: 351 LEELADDGIKPQYVIKVLRELLPD-DAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGT 409
Query: 486 MGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545
MGFGLPAA+GA +A P VV I GDG F+MN QEL +PVKI+++NN GM
Sbjct: 410 MGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNGGYGMVR 469
Query: 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETP 605
++++ ++ + + LG+ PD +K AEA G RV +++ A++ L +
Sbjct: 470 QWQELFYGGRYSGTDLGN--------PDFVKLAEAYGAKGIRVETPEELEEALEEALASD 521
Query: 606 GPYLLDVMVSYQEHVVPMIPYDKS 629
GP L+DV+V +E V PM+P K+
Sbjct: 522 GPVLIDVVVDPEEAVPPMVPLGKA 545
|
Length = 550 |
| >gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 609 bits (1573), Expect = 0.0
Identities = 239/561 (42%), Positives = 336/561 (59%), Gaps = 31/561 (5%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARS 129
GA +V AL QGV TVF YPGGA + ++ +L + +L RHEQG AA GYAR+
Sbjct: 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARA 60
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
+G GVC+ +SGPG TN++TGL DA DS+P++AITGQVS L+GTDAFQEI V+ ++
Sbjct: 61 TGKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLA 120
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL-ELAVPNWNQPCKLPSC 248
TKH++LV ++++P I+ EAF IA+SGRPGPVL+DIP D+QL E + +
Sbjct: 121 CTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDIQLAEGELEPHLTTVENEP- 179
Query: 249 ISSLPKEPDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGLTGIPVTCTTMG 306
L Q L+ ++K PVL VGGG + LR+F+ TG+P T G
Sbjct: 180 ------AFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKG 233
Query: 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHI 366
LG L M+GM GT AN AV ECDLL+A G RF++R+T KL FA AK++H+
Sbjct: 234 LGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHL 293
Query: 367 DIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFS 426
DID EI K++ V++ D + + L + AWR+ + + ++ +
Sbjct: 294 DIDPAEINKLRQAHVALQGDLNALLPALQQPL---------NIDAWRQHCAQLRAEHAWR 344
Query: 427 YKTFGEEIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFG 484
Y GE I YA +L +L+D +T+++T VGQHQMW Q + R +TSSG G
Sbjct: 345 YDHPGEAI---YAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLG 401
Query: 485 SMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544
+MGFGLPAA+GA VA P V+ + GDGSF+MN+QEL IK + +PVKI+L++NQ LGM
Sbjct: 402 TMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMV 461
Query: 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET 604
+++ +F+ + + L D PD + A A GIP +T+K V AA+ +L +
Sbjct: 462 RQWQQLFFDERYSETDLSDN-------PDFVMLASAFGIPGQTITRKDQVEAALDTLLNS 514
Query: 605 PGPYLLDVMVSYQEHVVPMIP 625
GPYLL V + E+V P++P
Sbjct: 515 EGPYLLHVSIDELENVWPLVP 535
|
Length = 548 |
| >gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Score = 601 bits (1552), Expect = 0.0
Identities = 259/570 (45%), Positives = 358/570 (62%), Gaps = 16/570 (2%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARS 129
GA+ I+E+L+ +GV TVF YPGGA + I+ +L S I IL RHEQG AA+GYAR+
Sbjct: 2 SGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARA 61
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
SG GV LV+SGPG TN++TG+ AY DSIP++ TGQV L+G+DAFQE ++ +T
Sbjct: 62 SGKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMP 121
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
+TKH++ V +DIPRIIKEAF IAT+GRPGPVL+D+P DV + + LP
Sbjct: 122 ITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIEYPYPEKVNLPG-- 179
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGL 307
+ L +++ +LI +K PV+ VGGG + +SEEL++ IPVT T MGL
Sbjct: 180 YRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGL 239
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G FP L L M+GM GT AN AV+ECDL++A G RF++R+T L FA AKI+HID
Sbjct: 240 GSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHID 299
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
ID EIGK D+ I DA+ V + L SAW E++++ KK+YP
Sbjct: 300 IDPAEIGKNVRVDIPIVGDARNVLEELLKKLFELK---ERKESAWLEQINKWKKEYPLKM 356
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
E I PQ I+ L+ +T D E I++T VGQHQMWA QFY +++ R+ +TS G G+MG
Sbjct: 357 DYTEEGIKPQQVIEELSRVTKD-EAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMG 415
Query: 488 FGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547
FGLPAA+GA VA P + V+ I GDGSF MNLQEL+ +IPVKIL++NN+YLGM ++
Sbjct: 416 FGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKILILNNRYLGMVRQW 475
Query: 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGP 607
++ ++E +++ +G PD +K AEA GI R+ K +++ ++ L + P
Sbjct: 476 QELFYEERYSHTHMGS-------LPDFVKLAEAYGIKGIRIEKPEELDEKLKEALSSNEP 528
Query: 608 YLLDVMVSYQEHVVPMIPYDKSFKDTILED 637
LLDV+V E+V+PM+ + I E
Sbjct: 529 VLLDVVVDKPENVLPMVAPGGGLDEMIGEK 558
|
Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this model also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed [Amino acid biosynthesis, Pyruvate family]. Length = 558 |
| >gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 557 bits (1436), Expect = 0.0
Identities = 250/574 (43%), Positives = 358/574 (62%), Gaps = 16/574 (2%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS 130
GA+++V+AL+ QGV +F YPGGA + I+ + + + I+ IL RHEQG AAEGYARS+
Sbjct: 13 GAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARST 72
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G PGV LV+SGPG TN +T L DA DSIP++ ITGQV L+G+DAFQE V +TR
Sbjct: 73 GKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPC 132
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TKHN+LV DV+D+ R+I EAF +ATSGRPGPV++DIP DVQ A + P K P +S
Sbjct: 133 TKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQ--FATGTYTPPQKAPVHVS 190
Query: 251 SLPK-EPDELALRQTLKLIVESKNPVLCVGGGCLNS----SEELRKFVGLTGIPVTCTTM 305
PK + D A+ + ++L+ +K PV+ GGG +NS S LR+ V LTG P+T T M
Sbjct: 191 YQPKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLM 250
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVH 365
GLG +P + + L M+GM GT AN A+++CD++L G RF++R+T +L+ F+ +K +H
Sbjct: 251 GLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIH 310
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQKKKYP 424
IDID + I K DV I D V M + +++G + W ++ + +
Sbjct: 311 IDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNS 370
Query: 425 FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFG 484
+Y + I PQYAIQ L ELT +T I+T VGQHQMWA QF+ ++ + +TS G G
Sbjct: 371 LAYTPSDDVIMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLG 430
Query: 485 SMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544
+MG+GLPAA+G +A+P A+V+DI GD S M +QE++ N+PVKI ++NNQY+GM
Sbjct: 431 TMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLPVKIFILNNQYMGMV 490
Query: 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET 604
+++ ++S+ +E PD +K AEA G R K D+ AIQ M++
Sbjct: 491 RQWQQLLHGNRLSHSY-------TEAMPDFVKLAEAYGAVGIRCEKPGDLDDAIQEMIDV 543
Query: 605 PGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDD 638
P + D V+ E+ PMIP K+ + +L D+
Sbjct: 544 DKPVIFDCRVANLENCFPMIPSGKAHNEMLLPDE 577
|
Length = 595 |
| >gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 551 bits (1421), Expect = 0.0
Identities = 245/578 (42%), Positives = 343/578 (59%), Gaps = 26/578 (4%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARS 129
G+ ++ EAL+ +GV VF YPGGA + I+ + + N + IL RHEQ + AA+GYAR+
Sbjct: 4 SGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARA 63
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
SG GV +V+SGPG TN +TGL AY DSIP++ I+GQV L+GTDAFQEI V ++R
Sbjct: 64 SGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRP 123
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
KHNYLV ++++PRI+KEAF+IA SGRPGPV IDIP DV L + + L +
Sbjct: 124 CVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTATLGEFEYPKEISLKTYK 183
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGL 307
+ + +++ + I E+K P+ +GGG + S SEE+R+ V TGIP T M
Sbjct: 184 PTYKGNSRQ--IKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLMAR 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G+ D L L M+GM G+ AN A++ECDLL++ G RF++R+T KL +FA AKI+H+D
Sbjct: 242 GVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVD 301
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
ID + I K+ D I D K V M+ E K + WRE L + +P SY
Sbjct: 302 IDPSSISKIVNADYPIVGDLKNVLK--EMLEELKEENPT-TYKEWREILKRYNELHPLSY 358
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
+ E + PQ+ I+ + EL D + IIST VGQHQMW QFY + RQL TS G G+MG
Sbjct: 359 EDSDEVLKPQWVIERVGELLGD-DAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMG 417
Query: 488 FGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM---- 543
+GLPAA+GA +A P +V++ GDGS +MN+QEL IPV +++NN +LGM
Sbjct: 418 YGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINIILNNNFLGMVRQW 477
Query: 544 -NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML 602
YE+RY E + PD +K AE+ G RVT K++ A++ L
Sbjct: 478 QTFFYEERYSETDL------------STQPDFVKLAESFGGIGFRVTTKEEFDKALKEAL 525
Query: 603 ETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
E+ L+DV + E+V+PM+P + + IL
Sbjct: 526 ESDKVALIDVKIDRFENVLPMVPAGGALYNMILPKKKD 563
|
Length = 563 |
| >gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 550 bits (1420), Expect = 0.0
Identities = 243/569 (42%), Positives = 350/569 (61%), Gaps = 19/569 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GA I++ LE++GV +F YPGGA I ++ L S++R IL RHEQ AA+GYAR++G
Sbjct: 10 GARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATG 69
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
GVC+ +SGPG TN++TG+ AY DS+PI+A+TGQV + ++G DAFQE + +T +T
Sbjct: 70 KVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPIT 129
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
KHNYLV D D+PRIIKEAF IA++GRPGPVLID+P DV ++ +L +
Sbjct: 130 KHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEIDFDYPDKVELRGYKPT 189
Query: 252 LPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGL 309
P + +++ +LI++++ P++ GGG + N+SEEL + PVT T MG+G
Sbjct: 190 YKGNPQQ--IKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGA 247
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDID 369
P L L M+GM GT YANYA+ E DL++A G RF++R+T KL FA AKI+HIDID
Sbjct: 248 IPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDID 307
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKT 429
EI K DV I DAK V + ++ D W +++++ KK+YP YK
Sbjct: 308 PAEISKNVKVDVPIVGDAKQVLKSLIKYVQYC------DRKEWLDKINQWKKEYPLKYKE 361
Query: 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFG 489
+ I PQY I+ + EL D II T VGQHQMWA Q++ YK R +TS G G+MG+G
Sbjct: 362 REDVIKPQYVIEQIYELCPD--AIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYG 419
Query: 490 LPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549
PAA+GA V P V+DI GDGSF MN QELA +IPV + ++NN YLGM ++++
Sbjct: 420 FPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVAILNNGYLGMVRQWQE 479
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609
+++ +++ + D +K AEA G RV K +VR AI+ + + P +
Sbjct: 480 LFYDKRYSHTCIKGS-------VDFVKLAEAYGALGLRVEKPSEVRPAIEEAVASDRPVV 532
Query: 610 LDVMVSYQEHVVPMIPYDKSFKDTILEDD 638
+D +V +E+V PM+P + + + ++
Sbjct: 533 IDFIVECEENVSPMVPAGAAINEILDLEE 561
|
Length = 561 |
| >gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 542 bits (1397), Expect = 0.0
Identities = 244/555 (43%), Positives = 340/555 (61%), Gaps = 17/555 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GA +++EALE++GV +F YPGGA + ++ +L I IL RHEQG I AAEGYAR SG
Sbjct: 18 GAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISG 77
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
PGV + +SGPG TN++TGL DA DS+P++ TGQV+ ++G+DAFQE ++ +T +T
Sbjct: 78 KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVT 137
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
KHNY V D+PRIIKEAF IAT+GRPGPVLIDIP D+ +E ++ LP +
Sbjct: 138 KHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDMVVEEGEFCYDVQMDLPGYQPN 197
Query: 252 LPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGL 309
EP+ L +R+ ++ + +K PV+ G G L +S+EL + IPV T +GLG
Sbjct: 198 --YEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLGG 255
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDID 369
FP L L M GM GT AN A+ ECDLL+ G RF++R+T L FA A + HIDID
Sbjct: 256 FPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDID 315
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKT 429
EIGK ++ I ADAK ++ + + W L K+KYP SYK
Sbjct: 316 PAEIGKNVPTEIPIVADAKQALQV--LLQQEGKKE---NHHEWLSLLKNWKEKYPLSYKR 370
Query: 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFG 489
E I PQ AI++L E+T E I++T VGQHQMWA Q+Y +K + +TS G G+MGFG
Sbjct: 371 NSESIKPQKAIEMLYEITKG-EAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFG 429
Query: 490 LPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549
LPAA+GA +A P VV I GDG F M LQEL+ IK ++PVK++++NN+ LGM ++++
Sbjct: 430 LPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNNEALGMVRQWQE 489
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609
++ ++S L PD +K AEA GI R+ + + + +Q +E P +
Sbjct: 490 EFYNQRYSHSLLSCQ-------PDFVKLAEAYGIKGVRIDDELEAKEQLQHAIELQEPVV 542
Query: 610 LDVMVSYQEHVVPMI 624
+D V E V+PM+
Sbjct: 543 IDCRVLQSEKVMPMV 557
|
Length = 571 |
| >gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 541 bits (1395), Expect = 0.0
Identities = 256/566 (45%), Positives = 351/566 (62%), Gaps = 19/566 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GA +++ L++ GVTTVF YPGGA + ++ +L S ++ IL RHEQ I AAEGYAR+SG
Sbjct: 17 GAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASG 76
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
GV +SGPG TN++TGL DAY DSIP++ ITGQV+ L+G D FQE VV +T +T
Sbjct: 77 KVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVT 136
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
KHNY V DV+ + RI++EAF+IA SGRPGPVLIDIP DVQ E +N+ ++P
Sbjct: 137 KHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKVTSFYNEVVEIPG--YK 194
Query: 252 LPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGL 309
PD + LR+ K I ++K P+L +GGG ++S SEEL +F IPV T MGLG
Sbjct: 195 PEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLMGLGA 254
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDID 369
+P D L L M+GM GT AN AV ECDLLLA GVRF++R+T KLE F+ +K VHIDID
Sbjct: 255 YPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDID 314
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKT 429
+E K + + D K ++M+L W +++ K++YP SYK
Sbjct: 315 PSEFHKNVAVEYPVVGDVKKA---LHMLLHMSI---HTQTDEWLQKVKTWKEEYPLSYKQ 368
Query: 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFG 489
E+ PQ+ I +++ELT+ E I++T VGQHQMWA FY K R LTS G G+MGFG
Sbjct: 369 KESELKPQHVINLVSELTNG-EAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFG 427
Query: 490 LPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549
PAA+GA +A +V+ I GD SF MN+QEL I NIPVK+ +INN++LGM ++++
Sbjct: 428 FPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINNKFLGMVRQWQE 487
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609
++E + S +G PD +K AEA G+ R T + + + GP +
Sbjct: 488 MFYENRLSESKIGS--------PDFVKVAEAYGVKGLRATNSTEAKQVMLEAFAHEGPVV 539
Query: 610 LDVMVSYQEHVVPMIPYDKSFKDTIL 635
+D V E+V PM+P +K + I+
Sbjct: 540 VDFCVEEGENVFPMVPPNKGNNEMIM 565
|
Length = 570 |
| >gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 541 bits (1396), Expect = 0.0
Identities = 247/565 (43%), Positives = 324/565 (57%), Gaps = 22/565 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSS 130
GA +V +LE GV VF PGGA + ++ L S +R +L RHEQG AAEGYA+++
Sbjct: 33 GAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQAT 92
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVC+ +SGPG TN++T + DA DS+P++AITGQV + L+GTDAFQE +V +T +
Sbjct: 93 GRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPI 152
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TKHN+LV D DDIPR+I EAF IA++GRPGPVL+DIP D +W LP
Sbjct: 153 TKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQAQTTFSWPPRMDLPGYRP 212
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLG 308
+P +R+ KLI ++ PVL VGGG + +S ELR+ LTGIPV T M G
Sbjct: 213 VT--KPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARG 270
Query: 309 LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDI 368
FP + L M GM GTV A A+ DLL+A G RF++R+T KL+ FA AK++H DI
Sbjct: 271 AFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADI 330
Query: 369 DSNEIGKVKLPDVSICADAKLVFNRMN-MILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
D EIGK + DV I D K V + + G D +AW L ++ YP Y
Sbjct: 331 DPAEIGKNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGY 390
Query: 428 -KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSM 486
+ + PQY I+ L E+ + I GVGQHQMWA QF Y++ R L S G G+M
Sbjct: 391 DEPSDGSLAPQYVIERLGEIA-GPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTM 449
Query: 487 GFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM--- 543
G+ +PAAMGA V P V IDGDG F M QELA E IP+K+ LINN LGM
Sbjct: 450 GYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGIPIKVALINNGNLGMVRQ 509
Query: 544 --NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLM 601
+ YE+RY +N+ L S PD +K AEA G R +++DV A I+
Sbjct: 510 WQTLFYEERY-----SNTDLHT---HSHRIPDFVKLAEAYGCVGLRCEREEDVDAVIEKA 561
Query: 602 LETPG-PYLLDVMVSYQEHVVPMIP 625
P ++D +V V PM+
Sbjct: 562 RAINDRPVVIDFVVGKDAMVWPMVA 586
|
Length = 612 |
| >gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Score = 530 bits (1368), Expect = 0.0
Identities = 246/572 (43%), Positives = 347/572 (60%), Gaps = 28/572 (4%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL----TRSNIRSILPRHEQGGIFAAEGYA 127
GA ++++L R GV +F YPGGA + I+ L + I+ IL RHEQG AA+GYA
Sbjct: 12 GAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYA 71
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT 187
RS+G GVC +SGPG TN++TG+ A DS+P+L ITGQV + +GTDAFQE+ + +T
Sbjct: 72 RSTGKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGIT 131
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLE----LAVPNWNQPC 243
+ KH+Y+V D DI RI+ EAF+IA GRPGPVLIDIP DV LE N
Sbjct: 132 LPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKFDYYPPEPGNTII 191
Query: 244 KLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301
K+ C P + Q KLI++S P+L VGGG + ++ +E+ + L IPVT
Sbjct: 192 KILGCRPIYK--PTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITELAELYKIPVT 249
Query: 302 CTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRA 361
T MG G+F LCL M+GM GT YAN+AV+ECDLL+A G RF++R+T KL++FA A
Sbjct: 250 TTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNA 309
Query: 362 KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF----DFSAWREELH 417
+++HIDID EIGK ++P V+I D K V + +LE AWRE ++
Sbjct: 310 QVIHIDIDPAEIGKNRIPQVAIVGDVKKV---LQELLELLKNSPNLLESEQTQAWRERIN 366
Query: 418 EQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQL 477
+K+YP + PQ I +++L D +T VGQHQMWA QF K R+
Sbjct: 367 RWRKEYPLLIPKPSTSLSPQEVINEISQLAPD--AYFTTDVGQHQMWAAQFLKCKP-RKW 423
Query: 478 LTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537
L+S+G G+MG+GLPAA+GA +A+P +V+ I GD SF MNLQEL I N+P+KI++IN
Sbjct: 424 LSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNLPIKIIIIN 483
Query: 538 NQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAA 597
N++ GM +++ ++ ++S E PD +K AEA GI R+ +KD++++
Sbjct: 484 NKWQGMVRQWQQAFYGERYSHS------NMEEGAPDFVKLAEAYGIKGLRIKSRKDLKSS 537
Query: 598 IQLMLETPGPYLLDVMVSYQEHVVPMIPYDKS 629
++ L+ GP L+D V E+ PM+ KS
Sbjct: 538 LKEALDYDGPVLIDCQVIEDENCYPMVAPGKS 569
|
Length = 585 |
| >gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 531 bits (1369), Expect = 0.0
Identities = 242/601 (40%), Positives = 340/601 (56%), Gaps = 42/601 (6%)
Query: 42 TNSTLNIPTSTAPFQQTDFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASI---- 97
T+S I ST Q GA ++++L+R GV +F YPGGA +
Sbjct: 2 TSSPPKIGDSTTVTPQR-----------ATGAYALMDSLKRHGVKHIFGYPGGAILPIYD 50
Query: 98 EIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSD 157
E++++ ++ IL RHEQG AA+GYAR++G GVC +SGPG TN++TG+ A D
Sbjct: 51 ELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQMD 110
Query: 158 SIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217
S+P++ ITGQV + +GTDAFQE + +T + KH+Y+V D D+ RI+ EAF IA+SG
Sbjct: 111 SVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSG 170
Query: 218 RPGPVLIDIPVDVQLELA--VPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPV 275
RPGPVLIDIP DV E VP K P + + + LKLI E++ P+
Sbjct: 171 RPGPVLIDIPKDVGQEEFDYVPVEPGSVKPPG--YRPTVKGNPRQINAALKLIEEAERPL 228
Query: 276 LCVGGGCLNSS--EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333
L VGGG +++ EL++ IPVT T MG G F L + M+GM GT YAN+AV
Sbjct: 229 LYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAV 288
Query: 334 NECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNR 393
ECDLL+A G RF++R+T KL++FA+RAK++HIDID E+GK + PDV I D + V +
Sbjct: 289 TECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVK 348
Query: 394 MNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETI 453
+ AW E ++ K+ YP + EI PQ + + +L D
Sbjct: 349 LLERSLEPTTP--PRTQAWLERINRWKQDYPLVVPPYEGEIYPQEVLLAVRDLAPD--AY 404
Query: 454 ISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513
+T VGQHQMWA QF + R+ ++S+G G+MGFG+PAAMG VA P V+ I GD S
Sbjct: 405 YTTDVGQHQMWAAQF-LRNGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDAS 463
Query: 514 FIMNLQELAAIKAENIPVKILLINNQYLGMNVE-----YEDRYFEANRANSFLGDPLRKS 568
F+MN+QEL + I VK ++INN + GM + Y +RY +N
Sbjct: 464 FLMNIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPG--------- 514
Query: 569 EIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDK 628
PD +K AEA G+ ++++ ++ AI L GP L+DV V E+ PM+P K
Sbjct: 515 --MPDFVKLAEAFGVKGMVISERDQLKDAIAEALAHDGPVLIDVHVRRDENCYPMVPPGK 572
Query: 629 S 629
S
Sbjct: 573 S 573
|
Length = 616 |
| >gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 520 bits (1340), Expect = e-179
Identities = 238/562 (42%), Positives = 338/562 (60%), Gaps = 18/562 (3%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS 130
KGA+ I++ALE +GV +F YPGGA + + +L S++ IL RHEQ AA+GYAR+S
Sbjct: 2 KGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARAS 61
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVC+ +SGPG TN++TG+ AY+DS P++A+TGQV KL+G DAFQEI + + +
Sbjct: 62 GKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPI 121
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ-LELAVPNWNQPCKLPSCI 249
TKHN+ + ++IP I + AF IA +GRPGPV ID+P DVQ EL + + P K+
Sbjct: 122 TKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGELDLEKYPIPAKIDLPG 181
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGL 307
L +++ +LI E++ PV+ GGG + +SEEL + L IPV T MG
Sbjct: 182 YKPTTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTLMGK 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G FP L L MVGM GT ANY+V E D+L+A G RF++R T + FA AKI+HID
Sbjct: 242 GAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHID 301
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
ID EIGK DV I DAK V + L K + + S W E + + KK+
Sbjct: 302 IDPAEIGKNVRVDVPIVGDAKNVLRDLLAELMKK---EIKNKSEWLERVKKLKKESIPRM 358
Query: 428 KTFGEEIPPQYAI----QILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
+ I PQ I ++L E+ + TII+T VGQ+QMW F+ R ++S G
Sbjct: 359 DFDDKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQNQMWMAHFFKTSAPRSFISSGGL 418
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G+MGFG PAA+GA VA P A V+ I GDG F+MN QELA I +IPV I + +N+ LGM
Sbjct: 419 GTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPVVICIFDNRTLGM 478
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603
++++ Y+ ++ LG+ PD +K AE+ G+ A RV K +++ A++ ++
Sbjct: 479 VYQWQNLYYGKRQSEVHLGET-------PDFVKLAESYGVKADRVEKPDEIKEALKEAIK 531
Query: 604 TPGPYLLDVMVSYQEHVVPMIP 625
+ PYLLD+++ E +PM+P
Sbjct: 532 SGEPYLLDIIIDPAE-ALPMVP 552
|
Length = 586 |
| >gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 510 bits (1315), Expect = e-175
Identities = 227/582 (39%), Positives = 324/582 (55%), Gaps = 39/582 (6%)
Query: 53 APFQQTDFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSI 111
A T RF GA++IV LERQG+ V PGGA + ++ +L++S IR I
Sbjct: 2 ASSGTTSTRKRFT------GAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHI 55
Query: 112 LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQK 171
L RHEQG F A+G AR++G P VC+ SGPG TN++T + DA DSIP++ ITGQV
Sbjct: 56 LARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPAS 115
Query: 172 LLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231
++GTDAFQE+ ++ +TKHNYLV D++++P++I +AF IA SGRPGPV IDIP DVQ
Sbjct: 116 MIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDVQ 175
Query: 232 L-ELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEE 288
+ + P DE ++R +I +K PVL +GGG +NS
Sbjct: 176 TAVIELEALPAP-----AEKDAAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPAR 230
Query: 289 LRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE 348
R+ +P T T M LG+ P L L M+GM G NY + E DLL+ G RF++
Sbjct: 231 ARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDD 290
Query: 349 RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFD 408
R K E F AKI+H+DID E+GK+K P V+I AD V ++ ++E++
Sbjct: 291 RAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEAQ------P 344
Query: 409 FSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQF 468
+ W + + + ++++P + + I + DD II+T VGQHQMW Q
Sbjct: 345 RAEWHQLVADLQREFPCPIPKADDPLSHYGLINAVAACVDD-NAIITTDVGQHQMWTAQA 403
Query: 469 YMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAEN 528
Y R RQ LTS G G+MGFGLPAA+GAA+ANP V+ GDGS +MN+QE+A
Sbjct: 404 YPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQ 463
Query: 529 IPVKILLINNQYLGM-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI 583
+ VKI+L+NN+ LG+ ++ Y R F A + ++ A G+
Sbjct: 464 LDVKIILMNNEALGLVHQQQSLFYGQRVFAATYPGK------------INFMQIAAGFGL 511
Query: 584 PAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625
+ + D +AA+Q + PGP L+ V + +E V PM+P
Sbjct: 512 ETCDLNNEADPQAALQEAINRPGPALIHVRIDAEEKVYPMVP 553
|
Length = 564 |
| >gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 481 bits (1240), Expect = e-164
Identities = 228/567 (40%), Positives = 337/567 (59%), Gaps = 22/567 (3%)
Query: 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEG 125
+ P+ G+D+++E L GV T+F YPGGA + ++ ++ IR IL RHEQG + AEG
Sbjct: 7 ESPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEG 66
Query: 126 YARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVE 185
YA+S+G GV +V+SGPG TN +TG+ DA SDS+P+L TGQV++ +G DAFQE +V
Sbjct: 67 YAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVG 126
Query: 186 VTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP-CK 244
+T +TK+NY + + DIPRII EA IAT+GRPGPV+ID+P DV L P
Sbjct: 127 ITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVS-ALETDFIYDPEVN 185
Query: 245 LPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGC--LNSSEELRKFVGLTGIPVTC 302
LPS +L EP+++ +++ LK + ++K PV+ GGG ++ EL F IPV
Sbjct: 186 LPSYQPTL--EPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVT 243
Query: 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK 362
T +G G + L L M GM G+ AN A+ E D ++ G RF++R+T + FA AK
Sbjct: 244 TLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAK 303
Query: 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK 422
+ HIDID EIGK+ D+ + DAK + M+L V + W E++ + K +
Sbjct: 304 VAHIDIDPAEIGKIIKTDIPVVGDAK---KALQMLLAEPTV--HNNTEKWIEKVTKDKNR 358
Query: 423 YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
SY + PQ I+ + ELT+ + I+ T VGQHQMWA Q+Y Y+ RQL+TS G
Sbjct: 359 VR-SYDKKERVVQPQAVIERIGELTNG-DAIVVTDVGQHQMWAAQYYPYQNERQLVTSGG 416
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
G+MGFG+PAA+GA +ANP V+ GDG F M QELA + +P+K++++NN LG
Sbjct: 417 LGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNHSLG 476
Query: 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML 602
M ++++ ++E + S PD A+A GI + + + ++++
Sbjct: 477 MVRQWQESFYEGRTSESVFDT-------LPDFQLMAQAYGIKHYKFDNPETLAQDLEVIT 529
Query: 603 ETPGPYLLDVMVSYQEHVVPMIPYDKS 629
E P L++V +S +EHV+PM+P KS
Sbjct: 530 EDV-PMLIEVDISRKEHVLPMVPAGKS 555
|
Length = 566 |
| >gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 456 bits (1176), Expect = e-154
Identities = 223/573 (38%), Positives = 334/573 (58%), Gaps = 19/573 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS 130
GA+++V AL +GV ++ YPGGA + I+ +L + + + IL RHEQ A+GYAR++
Sbjct: 6 GAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARAT 65
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GV LV+SGPG TN +TG+ AY DSIP++ ++GQV L+G DAFQE +V ++R +
Sbjct: 66 GKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPI 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
KH+++V +IP IIK+AF+IA SGRPGPV++DIP D+ + P K+
Sbjct: 126 VKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDMTNPAEKFEYEYPKKVKLRSY 185
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLG 308
S +R+ +++++ +K PV+ GGG + N+S L + L +PVT T MGLG
Sbjct: 186 SPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNTLMGLG 245
Query: 309 LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDI 368
FP TD L M+GM GT AN A++ D++LA G RF++R+T+ F AKI+HIDI
Sbjct: 246 GFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDI 305
Query: 369 DSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFD---FSAWREELHEQKKKYP- 424
D I K D+ I + V M IL K +G D +AW +++ E + ++
Sbjct: 306 DPASISKTIKADIPIVGPVESVLTEMLAIL--KEIGEKPDKEALAAWWKQIDEWRGRHGL 363
Query: 425 FSY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
F Y K G I PQ ++ L E+T+ + +++ VGQHQM+A Q+Y + + + + S G
Sbjct: 364 FPYDKGDGGIIKPQQVVETLYEVTNG-DAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGL 422
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G+MGFGLPAAMG +A P V + G+GS MN+QEL+ +PVKI+ +NN LGM
Sbjct: 423 GTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVKIINLNNGALGM 482
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI-QLML 602
+++D +E ++S++ E PD +K AEA G R+T KD++ + +
Sbjct: 483 VRQWQDMQYEGRHSHSYM-------ESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAFA 535
Query: 603 ETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTIL 635
+D+ V EHV PM D S +D L
Sbjct: 536 MKDRLVFIDIYVDRSEHVYPMQIADGSMRDMWL 568
|
Length = 574 |
| >gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 451 bits (1161), Expect = e-152
Identities = 231/590 (39%), Positives = 338/590 (57%), Gaps = 34/590 (5%)
Query: 61 SSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGG 119
S P GA+I+++AL +GV ++ YPGGA + I+ L + + I+ +L RHEQ
Sbjct: 12 ESLSPPAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAA 71
Query: 120 IFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQ 179
+ AA+GYAR++G GV LV+SGPGVTN +TG+ AY DSIP++ I+GQV +G DAFQ
Sbjct: 72 VHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQ 131
Query: 180 EIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNW 239
E V +TR + KHN+LV DV D+ +K+AF+IA +GRPGPV++DIP DV +
Sbjct: 132 ECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPCEYEY 191
Query: 240 NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTG 297
+ ++ S + + +R+ + L++ +K P + GGG + N+S ELR+ L G
Sbjct: 192 PKSVEMRS--YNPVTKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLG 249
Query: 298 IPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDF 357
PVT T MGLG +P +D+ L M+GM GT AN A+ CD+L+A G RF++R+ F
Sbjct: 250 YPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPAHF 309
Query: 358 ATRA-KIVHIDIDSNEIGK-VKLPDVSICADAKLVFNRM-NMILESKGVGFMFDFSAWRE 414
A+R KI+HIDID + I K VK+ D+ I D K V + + ++ + W +
Sbjct: 310 ASRPRKIIHIDIDPSSISKRVKV-DIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWK 368
Query: 415 ELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRA 474
++ + + Y E I PQY ++ L ELT D + + + VGQHQMWA QFY +
Sbjct: 369 QIEGWRSRDCLKYDRESEIIKPQYVVEKLWELT-DGDAFVCSDVGQHQMWAAQFYRFNEP 427
Query: 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534
R+ + S G G+MG GLP AMG +A+P VV I G+GS M +QEL+ + PVKI+
Sbjct: 428 RRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDTPVKII 487
Query: 535 LINNQYLGM-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589
+NN+YLGM +EY RY ++S++ + PD +K AEA G R+
Sbjct: 488 SLNNRYLGMVRQWQEIEYSKRY-----SHSYM-------DALPDFVKLAEAYGHVGMRIE 535
Query: 590 KKKDV----RAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTIL 635
K DV R A++L T LD E+V PM+ K + +L
Sbjct: 536 KTSDVEPALREALRLKDRT---VFLDFQTDPTENVWPMVQAGKGITEMLL 582
|
Length = 587 |
| >gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 434 bits (1117), Expect = e-145
Identities = 215/561 (38%), Positives = 327/561 (58%), Gaps = 21/561 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARSS 130
GA +IV +L +GV +F YPGG+ ++I+ +L +S I IL RHEQ + A+GYAR++
Sbjct: 6 GASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARAT 65
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GV LV+SGPG TN +TG+ AY DSIP++ ++GQV L+G DAFQE ++ ++R +
Sbjct: 66 GKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPV 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
KH++LV D +DIP IIK+AF+IA++GRPGPV+ID+P D P P + P I
Sbjct: 126 VKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC----LNPAILHPYEYPESIK 181
Query: 251 SLPKEPDELA----LRQTLKLIVESKNPVLCVGGGCLNSS--EELRKFVGLTGIPVTCTT 304
P +++ L+ ++ +K PVL VGGG + S +++ + +PV T
Sbjct: 182 MRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTL 241
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
MGLG FP T + L M+GM G AN A++ DL+ GVRF++R T+ LE + A I+
Sbjct: 242 MGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATIL 301
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRM-NMILESKGVGFMFDFSAWREELHEQKKKY 423
HIDID + I K D+ I A V + M ++ ES ++W E+ + +
Sbjct: 302 HIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRN 361
Query: 424 PFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
+Y E I PQ I+ L +LT+ + +++ VGQHQM+A +Y + + R+ + S G
Sbjct: 362 CLAYDKSSERIKPQQVIETLYKLTNG-DAYVASDVGQHQMFAALYYPFDKPRRWINSGGL 420
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G+MGFGLPAAMG A P VV + GDGS MN+QEL+ +IPVKI+ +NN++LGM
Sbjct: 421 GTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKIINLNNRFLGM 480
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603
+++D ++ ++S++ PD K AEA G R++ ++ + ++ L
Sbjct: 481 VKQWQDMIYQGRHSHSYMDS-------VPDFAKIAEAYGHVGIRISDPDELESGLEKALA 533
Query: 604 TPGPYL-LDVMVSYQEHVVPM 623
+ +D+ V EHV PM
Sbjct: 534 MKDRLVFVDINVDETEHVYPM 554
|
Length = 572 |
| >gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 429 bits (1104), Expect = e-143
Identities = 212/563 (37%), Positives = 326/563 (57%), Gaps = 23/563 (4%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARSS 130
GA+++V +L QGV VF YPGGA ++I+ +L T I +L RHEQ + A+G AR++
Sbjct: 6 GAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARAT 65
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GV LV+SGPG TN +TG+ AY DSIP++ ++GQV+ L+G DAFQE +V ++R +
Sbjct: 66 GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPV 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
KH++LV +DIP+++K+AF++A SGRPGPV++D+P D+ P P P +S
Sbjct: 126 VKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI----LNPANKLPYVWPESVS 181
Query: 251 SLPKEPDELA----LRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTT 304
P +++ L+ +V +K PV+ VGGG +N+ ++L++ V +PV +
Sbjct: 182 MRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSL 241
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
MGLG FP T L M+GM GT AN ++ D++ A GVRF++R T+ L + A ++
Sbjct: 242 MGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVL 301
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFD-FSAWREELHEQKKKY 423
HIDID I K D+ I DA+ V +M +L + D W +++ + + +
Sbjct: 302 HIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQ 361
Query: 424 PFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
Y T E+I PQ I+ L LT + + S VGQHQM+A +Y + + R+ + S G
Sbjct: 362 CLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSD-VGQHQMFAALYYPFDKPRRWINSGGL 420
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G+MGFGLPAA+G +A P VV + GDGS MN+QEL+ +PV +L +NN+YLGM
Sbjct: 421 GTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGM 480
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603
+++D + + S++ + PD ++ AEA G +++ ++ + + LE
Sbjct: 481 VKQWQDMIYSGRHSQSYM-------QSLPDFVRLAEAYGHVGIQISHPDELESKLSEALE 533
Query: 604 TPGPYLL---DVMVSYQEHVVPM 623
L DV V EHV PM
Sbjct: 534 QVRNNRLVFVDVTVDGSEHVYPM 556
|
Length = 574 |
| >gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 427 bits (1098), Expect = e-142
Identities = 217/577 (37%), Positives = 334/577 (57%), Gaps = 21/577 (3%)
Query: 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGY 126
K GA+++V++L +GV VF YPGG+ ++I+ ++ T I +L RHEQ + A+GY
Sbjct: 2 KKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGY 61
Query: 127 ARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEV 186
ARS+G G LV+SGPG TN +TG+ AY+DS+P++ ++GQV L+GTDAFQE ++ +
Sbjct: 62 ARSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
+R + KH+++V + +DIP IK+AF+IA++GRPGPV+IDIP D+ P + P
Sbjct: 122 SRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM----VNPANKFTYEYP 177
Query: 247 SCISSLPKEPD----ELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPV 300
+S P + +++ LK ++ +K PVL VGGG + SE+L +F +PV
Sbjct: 178 EEVSLRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPV 237
Query: 301 TCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATR 360
T + MGLG +P TD+ L M+GM GT AN A++E DL+L GVRF++R T+ L +
Sbjct: 238 TSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPN 297
Query: 361 AKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQ 419
AK++HIDID I K + I AK V +LE + + D +AW ++++E
Sbjct: 298 AKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEW 357
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
K K + + I PQ ++ + LT+ + + S VGQHQM+A Y + + R+ +
Sbjct: 358 KAKKCLEFDRTSDVIKPQQVVEAIYRLTNGDAYVASD-VGQHQMFAALHYPFDKPRRWIN 416
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
S G G+MGFGLPAA+G A+P A VV + GDGS MN+QEL+ K +IPV I+ +NN+
Sbjct: 417 SGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIVSLNNR 476
Query: 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ 599
+LGM +++D + + ++ PD K AEA G ++ ++ +
Sbjct: 477 FLGMVKQWQDLIYSGRHSQVYMNS-------LPDFAKLAEAYGHVGIQIDTPDELEEKLT 529
Query: 600 LMLETPGPYL-LDVMVSYQEHVVPMIPYDKSFKDTIL 635
+ +DV V EHV PM + + IL
Sbjct: 530 QAFSIKDKLVFVDVNVDETEHVYPMQIRGGAMNEMIL 566
|
Length = 574 |
| >gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 376 bits (966), Expect = e-123
Identities = 214/576 (37%), Positives = 324/576 (56%), Gaps = 22/576 (3%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIH----QSLTRSNIRSILPRHEQGGIFAAEGYA 127
GA I+V++L+R+GV +F PG ++++I+ + L +R +L RHEQ AA+GYA
Sbjct: 4 GARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYA 63
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT 187
R+SG PGVC +SGPG TN++TGL+ AY DS P++AITGQV + ++G AFQE + V
Sbjct: 64 RASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVF 123
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLE-LAVPNWNQPCKLP 246
+TK+ + +D+IP+ IK AF+IAT+GRPGPV+IDIP D+ E + W + L
Sbjct: 124 ENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEEIKWPEK-PLV 182
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304
P D LAL++ ++++ ++ P++ VG G + N++ E+ + L IP+ T
Sbjct: 183 KGYRDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIPIVSTF 242
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNER-MTSKLEDFATRAKI 363
G P L +G +G A+ A E D +L G RF++R TS E TR K
Sbjct: 243 PGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKF 302
Query: 364 VHIDIDSNEIGKVKLPDVSICADAKLVFNRM-NMILESKGVGFMFDFSAWREELHEQKKK 422
+ ++ID + K DV I +AK++ + I E +G D SAW + + E K+
Sbjct: 303 IMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAITE---LGQKRDRSAWLKRVKEYKEY 359
Query: 423 YP-FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSS 481
Y F Y ++ P ++ + + + I++TGVGQHQMWA F+ R LTSS
Sbjct: 360 YSQFYYTEENGKLKPWKIMKTIRQ-ALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSS 418
Query: 482 GFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYL 541
G G+MGFGLPAAMGA +A P +VVD+DGDGSF+M LA E+IPV ++ +N+ L
Sbjct: 419 GMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPVISVIFDNRTL 478
Query: 542 GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLM 601
G+ + +D +F +G S PD +K AEA G VT +D+ +++
Sbjct: 479 GLVRQVQDLFF----GKRIVGVDYGPS---PDFVKLAEAFGALGFNVTTYEDIEKSLKSA 531
Query: 602 LETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILED 637
++ P ++ V V +E +P +P K IL D
Sbjct: 532 IKEDIPAVIRVPVDKEELALPTLPPGGRLKQVILRD 567
|
Length = 572 |
| >gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Score = 314 bits (808), Expect = 3e-99
Identities = 187/563 (33%), Positives = 289/563 (51%), Gaps = 35/563 (6%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSS- 130
D V LE++GVTT F PG A + ++ + IR IL RH +G AEGY R++
Sbjct: 7 VDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATA 66
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVC+ +SGP T+++TGL A +DSIPIL ITGQ + L + FQ + + + + +
Sbjct: 67 GNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPV 126
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TK V + +PR+ ++AF + SGRPGPVLID+P DVQ +A ++ P
Sbjct: 127 TKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQ--VAEIEFD-----PDTYE 179
Query: 251 SLP---KEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTM 305
LP + + L+++ ++ P++ GGG +N+ S+ L +F LTG+PV T M
Sbjct: 180 PLPVYKPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLM 239
Query: 306 GLGLFPCTDELCLRMVGMFG----TVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRA 361
G G P L M GM G Y N + D +L G R+ R T +E +
Sbjct: 240 GWGAIPDDHPL---MAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHTGSVEVYTKGR 296
Query: 362 KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL-ESKGVGFMFDFSAWREELHEQK 420
K VH+DI+ +IG+V PD+ I +DAK + + E K G + D SAW + E+K
Sbjct: 297 KFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERK 356
Query: 421 KKYPFSYKTFGEEIP--PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
+ KT + +P PQ + +N+ + +ST +G Q+ A QF + R +
Sbjct: 357 RTLL--RKTHFDNVPIKPQRVYEEMNKAFGRDTCYVST-IGLSQIAAAQFLHVYKPRHWI 413
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
G +G+ +PAA+G A+P VV + GD F ++ELA N+P +L+NN
Sbjct: 414 NCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLPYIHVLVNN 473
Query: 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFP---DMLKFAEACGIPAARVTKKKDVR 595
YLG+ + R F+ + + + E+ D +K AE G A RV K +D+
Sbjct: 474 AYLGL-IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVFKPEDIA 532
Query: 596 AAIQ----LMLETPGPYLLDVMV 614
A++ LM E P +++V++
Sbjct: 533 PALEQAKALMAEFRVPVVVEVIL 555
|
Length = 591 |
| >gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 7e-95
Identities = 172/565 (30%), Positives = 278/565 (49%), Gaps = 52/565 (9%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS 130
K AD+ V+ LE +GV +F PG ++++ ++L S+I+ IL RHEQG F A Y R +
Sbjct: 2 KAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLT 61
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVCL + GPG TN++TG+ A +P++AITGQ K +FQ + VV + +
Sbjct: 62 GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPL 121
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLEL--AVPNWNQPCKLPSC 248
TK ++ D+IP +++EAF +A RPG V +++P D+ E P LP
Sbjct: 122 TKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIAAEETDGKP-------LPRS 174
Query: 249 ISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306
S P A+ + + I +KNP++ +G G +S+ L +FV TGIP T MG
Sbjct: 175 YSRRP-YASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMG 233
Query: 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE----RMTSKLEDFATRAK 362
G+ P T L L G+ Y + A+ DL++ G E M + K
Sbjct: 234 KGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMNPNGD-----KK 288
Query: 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAW---REELHEQ 419
++HI+ E+ V P V + D + N + + E +DF + RE +
Sbjct: 289 VIHINFLPAEVDPVYFPQVEVVGD---IANSLWQLKERLADQPHWDFPRFLKIREAIEAH 345
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
++ F + PQ + L ++ D++ I+ G +++W + Y L
Sbjct: 346 LEEGADD-DRF--PMKPQRIVADLRKVMPDDD-IVILDNGAYKIWFARNYRAYEPNTCLL 401
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQEL-AAIKAENIPVKILLIN- 537
+ +MG GLP+A+ A + +P V+ + GDG F+MN QEL A++ +P+ +L++N
Sbjct: 402 DNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVR-LGLPLVVLILND 460
Query: 538 NQYLGMNVEY--EDRYFEANRANSFL--GDPLRKSEIFPDMLKFAEACGIPAARVTKKKD 593
N Y GM + + E+ FE + L G+ PD +K+AE+ G RV D
Sbjct: 461 NAY-GM-IRWKQENMGFE----DFGLDFGN--------PDFVKYAESYGAKGYRVESADD 506
Query: 594 VRAAIQLMLETPGPYLLDVMVSYQE 618
+ ++ L PG +++D V Y E
Sbjct: 507 LLPTLEEALAQPGVHVIDCPVDYSE 531
|
Length = 547 |
| >gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase | Back alignment and domain information |
|---|
Score = 291 bits (745), Expect = 4e-90
Identities = 182/561 (32%), Positives = 294/561 (52%), Gaps = 27/561 (4%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARS 129
+ D V LE++G+TT F PG A + +L IR IL RH +G AEGY R+
Sbjct: 4 RAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRA 63
Query: 130 -SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
+G GVC+ +SGP T+++TGL A +DSIPIL ITGQ + L + FQ + + + +
Sbjct: 64 TAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAK 123
Query: 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL-ELAV-PNWNQPCKLP 246
++K V + +PR++++AF + SGRPGPVLID+P DVQ+ E+ P+ +P LP
Sbjct: 124 PVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEP--LP 181
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLN--SSEELRKFVGLTGIPVTCTT 304
+ + E A ++++ ++ P++ GGG +N +++ L++F LTG+PV T
Sbjct: 182 VYKPAATRAQIEKA----VEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTL 237
Query: 305 MGLGLFPCTDELCLRMVGMFGT-VYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKI 363
MG G P EL MVG+ + Y N + E D + G R+ R T ++ + K
Sbjct: 238 MGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKF 297
Query: 364 VHIDIDSNEIGKVKLPDVSICADAKLVFNRM-NMILESKGVGFMFDFSAWREELHEQKKK 422
VH+DI+ +IG+V PD+ I +DAK + + E K G + D S W + ++K+
Sbjct: 298 VHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRT 357
Query: 423 YPFSYKTFGEEIP--PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTS 480
KT + +P PQ + +N+ + ++T +G Q+ Q + R +
Sbjct: 358 --LLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTT-IGLSQIAGAQMLHVYKPRHWINC 414
Query: 481 SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540
G +G+ +PAA+G A+P VV + GD F ++ELA NIP +L+NN Y
Sbjct: 415 GQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYIHVLVNNAY 474
Query: 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFP---DMLKFAEACGIPAARVTKKKDVRAA 597
LG+ + R F+ + + + SE+ D +K AE G A RV K +++ A
Sbjct: 475 LGL-IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEEIAPA 533
Query: 598 IQ----LMLETPGPYLLDVMV 614
+ LM E P +++V++
Sbjct: 534 FEQAKALMAEHRVPVVVEVIL 554
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. Length = 588 |
| >gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Score = 273 bits (702), Expect = 7e-89
Identities = 91/192 (47%), Positives = 129/192 (67%), Gaps = 8/192 (4%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
I PQ I+ L+ELT + I++T VGQHQMWA Q+Y +K+ R LTS G G+MGFGLPAA
Sbjct: 1 IKPQEVIKELSELTPGD-AIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAA 59
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
+GA VA P V+ IDGDGSF MN+QELA N+PVKI+++NN LGM ++++ ++E
Sbjct: 60 IGAKVARPDKTVICIDGDGSFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYE 119
Query: 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613
+++ + PD +K AEA GI RV K +++ AA++ L + GP LLDV+
Sbjct: 120 GRYSHT-------TLDSNPDFVKLAEAYGIKGLRVEKPEELEAALKEALASDGPVLLDVL 172
Query: 614 VSYQEHVVPMIP 625
V +E+V+PM+P
Sbjct: 173 VDPEENVLPMVP 184
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. Length = 186 |
| >gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Score = 282 bits (722), Expect = 1e-86
Identities = 183/561 (32%), Positives = 294/561 (52%), Gaps = 27/561 (4%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARS 129
+ D V LE++G+TT F PG A + +L IR IL RH +G AEGY R+
Sbjct: 5 RAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRA 64
Query: 130 -SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
+G GVC+ +SGP T+++TGL A +DSIPIL ITGQ + L + FQ + + + +
Sbjct: 65 TAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAK 124
Query: 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL-ELAV-PNWNQPCKLP 246
++K V + +PR++++AF + SGRPGPVLID+P DVQ+ E+ P+ +P LP
Sbjct: 125 PVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDMYEP--LP 182
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLN--SSEELRKFVGLTGIPVTCTT 304
+ + E A L ++++++ P++ GGG +N ++ L++F LTG+PV T
Sbjct: 183 VYKPAATRVQAEKA----LAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTL 238
Query: 305 MGLGLFPCTDELCLRMVGMFGT-VYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKI 363
MG G P L MVG+ + Y N + D++ G R+ R T +E + K
Sbjct: 239 MGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKF 298
Query: 364 VHIDIDSNEIGKVKLPDVSICADAKLVFNR-MNMILESKGVGFMFDFSAWREELHEQKKK 422
+H+DI+ +IG+V PD+ I +DAK +++ E K G + AW + Q++K
Sbjct: 299 IHVDIEPTQIGRVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADC--QQRK 356
Query: 423 YPFSYKTFGEEIP--PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTS 480
KT + +P PQ + +N+ + ++T +G Q+ A QF + R +
Sbjct: 357 RTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTT-IGLSQIAAAQFLHVFKPRHWINC 415
Query: 481 SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540
G +G+ +PAA+G A+P VV I GD F ++ELA IP +L+NN Y
Sbjct: 416 GQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIPYIHVLVNNAY 475
Query: 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFP---DMLKFAEACGIPAARVTKKKDVRAA 597
LG+ + R F+ + + + SE+ D +K AE G A RV K +D+ A
Sbjct: 476 LGL-IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPA 534
Query: 598 IQ----LMLETPGPYLLDVMV 614
+ LM + P +++V++
Sbjct: 535 FEQAKALMAQHRVPVVVEVIL 555
|
Length = 592 |
| >gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 271 bits (696), Expect = 2e-83
Identities = 183/572 (31%), Positives = 254/572 (44%), Gaps = 66/572 (11%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSL--TRSNIRSILPRHEQGGIFAAEGYARS 129
G + IV L GV TVF PG + +L IR I RHEQ + A GYARS
Sbjct: 6 GGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARS 65
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQ--EIP-VVEV 186
+G PGVC V GPGV N L+ AY + P+L +TGQ+ L+G E+P +
Sbjct: 66 TGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLAT 125
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
R TK + + P ++ EAF SGRP PV +++P DV P P P
Sbjct: 126 LRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV-FGQRAPVAAAPPLRP 184
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMG 306
+ P PD A+ LI +KNP++ VGGG + EE+R+ + PV G
Sbjct: 185 ----APPPAPDPDAIAAAAALIAAAKNPMIFVGGGAAGAGEEIRELAEMLQAPVVAFRSG 240
Query: 307 LGLFPCTDELCLRMVGMFGTVYANYAV-NECDLLLAAGVRFNERMTSKLEDFATRAKIVH 365
G+ L L A Y + + D+++ G R E T + K++
Sbjct: 241 RGIVSDRHPLGLNFA-------AAYELWPQTDVVIGIGSRL-ELPTFRWPWRPDGLKVIR 292
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF 425
IDID E+ ++K PDV+I ADAK + L G + R EL E K
Sbjct: 293 IDIDPTEMRRLK-PDVAIVADAKAGTAALLDALSKAGS----KRPSRRAELRELKA---- 343
Query: 426 SYKTFGE--EIPPQ--YAIQILNELTDD----EETIISTGVGQHQMWA-IQFYMYKRARQ 476
+ PQ Y I L DD +E + VG + F +Y R
Sbjct: 344 --AARQRIQAVQPQASYLRAIREALPDDGIFVDE---LSQVG---FASWFAFPVY-APRT 394
Query: 477 LLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536
+T G++G+G P A+GA VANP VV I GDG F+ +QELA NI V ++
Sbjct: 395 FVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTVVF 454
Query: 537 NNQYLGMNV------EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590
NN G NV + R ++ N PD +K AE+ G+ A RV
Sbjct: 455 NNNAYG-NVRRDQKRRFGGRVVASDLVN-------------PDFVKLAESFGVAAFRVDS 500
Query: 591 KKDVRAAIQLMLETPGPYLLDVMVSYQEHVVP 622
+++RAA++ L GP L++V V P
Sbjct: 501 PEELRAALEAALAHGGPVLIEVPVPRGSEASP 532
|
Length = 542 |
| >gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 2e-80
Identities = 169/573 (29%), Positives = 262/573 (45%), Gaps = 69/573 (12%)
Query: 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYA 127
R G I+V+AL GV VF PG + + + +L ++IR I+ R E G AE Y
Sbjct: 7 ARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYG 66
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT 187
+ +G PG+C V+ GPG TN G+ A+ DS P++ GQV++ +AFQEI +
Sbjct: 67 KLTGRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMF 126
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPS 247
M K + D IP ++ AF +ATSGRPGPV++ +P DV E A P +
Sbjct: 127 GPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSETAEVPDAPPYRRV- 185
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTM 305
++ P D L + L ++ P++ +GG +LR F G+PV C
Sbjct: 186 --AAAPGAADLARLAELLA---RAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFR 240
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYA--------------VNECDLLLAAGVRFNERMT 351
LF NYA + E DL+LA G R E +T
Sbjct: 241 RQDLFDNRH--------------PNYAGDLGLGINPALAARIREADLVLAVGTRLGE-VT 285
Query: 352 SK----LEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF 407
++ L+ R +VH+ D+ E+G+V PD++I AD F LE
Sbjct: 286 TQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPA-AFAAALAALEPPAS---P 341
Query: 408 DFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQ---ILNELTDD--EETIISTGVGQHQ 462
++ W H Y + +P A+Q ++ L + + II+ G G +
Sbjct: 342 AWAEWTAAAHA-------DYLAWSAPLPGPGAVQLGEVMAWLRERLPADAIITNGAGNYA 394
Query: 463 MWAIQFYMYKRAR-QLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQEL 521
W +F+ ++R R QL +S GSMG+GLPAA+ A + P VV GDG F+MN QEL
Sbjct: 395 TWLHRFFRFRRYRTQLAPTS--GSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQEL 452
Query: 522 AAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC 581
A +P+ ++++NN G +++R + + + L + PD A A
Sbjct: 453 ATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTN--------PDFAALARAY 504
Query: 582 GIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
G V + +D A + L + P L+++ +
Sbjct: 505 GGHGETVERTEDFAPAFERALASGKPALIEIRI 537
|
Length = 557 |
| >gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 3e-74
Identities = 168/571 (29%), Positives = 264/571 (46%), Gaps = 54/571 (9%)
Query: 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGY 126
DK + GAD++V++L QGV VF PG + +L S I+ RHEQ F A
Sbjct: 2 DKKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAI 61
Query: 127 ARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEV 186
R +G PGV LV+SGPGV+N+ TGL+ A ++ P++AI GQV + Q + V +
Sbjct: 62 GRLTGKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVAL 121
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
R +TK++ V D D++ ++ AF A SGRPG + +P DV P P
Sbjct: 122 FRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDVVDAPVTSKAIAPLSKP 181
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVG--GGCLNSSEELRKFVGLTGIPVTCTT 304
+ P++ + LA +LI +K PVL +G + +R+ + T +PV T
Sbjct: 182 KLGPASPEDINYLA-----ELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETF 236
Query: 305 MGLG-----LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAG---VRFNERMTSKLED 356
G L D R VG+F + + + DL++ G + + R + D
Sbjct: 237 QAAGVISRELE---DHFFGR-VGLFRNQPGDELLKKADLVITIGYDPIEYEPRNWNSEGD 292
Query: 357 FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMN-----MILESKGVGFMFDFSA 411
A I+HID+ EI P+ + D + + + L + + +
Sbjct: 293 ----ATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLEIL---EE 345
Query: 412 WREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMW-AIQFYM 470
R +L E + P + + P I+ L ++ D+ T ++ VG H +W A F
Sbjct: 346 LRAQLEEL-AERPARLEEGA--VHPLRIIRALQDIVTDDTT-VTVDVGSHYIWMARYFRS 401
Query: 471 YKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQEL--AAIKAEN 528
Y R LL S+G ++G LP A+ AA+ PG VV + GDG F+ + EL A N
Sbjct: 402 Y-EPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLN 460
Query: 529 IPVKILLINNQYLGMNVEY--EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA 586
I V I+ + Y M VE+ E +Y ++ + G D +K+AE+ G
Sbjct: 461 I-VHIIWNDGHY-NM-VEFQEEMKYGRSSGVD--FGP--------VDFVKYAESFGAKGL 507
Query: 587 RVTKKKDVRAAIQLMLETPGPYLLDVMVSYQ 617
RVT ++ ++ L T GP ++D+ V Y
Sbjct: 508 RVTSPDELEPVLREALATDGPVVIDIPVDYS 538
|
Length = 552 |
| >gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 1e-73
Identities = 166/571 (29%), Positives = 274/571 (47%), Gaps = 52/571 (9%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
GAD++V+ LE QGV VF PG + +L I I+ RHEQ F A+ R +G
Sbjct: 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITG 60
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
PGV LV+SGPG +N++TGL A S+ P++AI GQV + L Q + V + R +T
Sbjct: 61 KPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPIT 120
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK---LPSC 248
K++ V D D + ++ AF A SG+PG + +P DV + P +P+
Sbjct: 121 KYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVV--------DSPVSVKAIPAS 172
Query: 249 ISSLPKEPDELALRQTLKLIVESKNPVLCVG--GGCLNSSEELRKFVGLTGIPVTCTTMG 306
+ + A+ + + I +K PVL +G ++E +R+ + T +PV T G
Sbjct: 173 YAPKLGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQG 232
Query: 307 LG-----LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAG---VRFNERMTSKLEDFA 358
G L D R VG+F + + + DL++ G + + R + D
Sbjct: 233 AGAVSRELE---DHFFGR-VGLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWNSEND-- 286
Query: 359 TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES-KGVGFMFDFSAWREELH 417
A IVHID++ +I PD+ + D + + ++++ E G D A E+L
Sbjct: 287 --ATIVHIDVEPAQIDNNYQPDLELVGD---IASTLDLLAERIPGYELPPDALAILEDLK 341
Query: 418 EQK---KKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRA 474
+Q+ + P + K + P I+ + + D+ T ++ +G H +W +++ RA
Sbjct: 342 QQREALDRVPATLKQAH--LHPLEIIKAMQAIVTDDVT-VTVDMGSHYIWMARYFRSYRA 398
Query: 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQEL--AAIKAENIPVK 532
R LL S+G ++G LP A+GAA+ P VV + GDG F+ + EL A NI V
Sbjct: 399 RHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNI-VH 457
Query: 533 ILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK 592
I+ +N Y + + E +Y R++ P+ D +K+AE+ G RV
Sbjct: 458 IIWNDNGYNMVEFQEEMKY---QRSSGVDFGPI-------DFVKYAESFGAKGLRVESPD 507
Query: 593 DVRAAIQLMLETPGPYLLDVMVSYQEHVVPM 623
+ ++ +E GP ++D+ V Y ++ M
Sbjct: 508 QLEPTLRQAMEVEGPVVVDIPVDYSDNPKLM 538
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family [Energy metabolism, Fermentation]. Length = 539 |
| >gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 2e-71
Identities = 158/558 (28%), Positives = 272/558 (48%), Gaps = 40/558 (7%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGT 132
A++I+ LE G+ ++ PG + + ++ +S ++ + RHE+G AA A+ +G
Sbjct: 5 AEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGK 64
Query: 133 PGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTK 192
P C+ +SGPG +++ GL DA D P++A+TGQV ++G D FQE+ + ++ +
Sbjct: 65 PSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAV 124
Query: 193 HNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELA--VPNWNQPCKLPSCIS 250
N ++++ ++ II+ A A S R G I++PVD+ + + + N +
Sbjct: 125 FNQILINPENAEYIIRRAIREAISKR-GVAHINLPVDILRKSSEYKGSKNTE------VG 177
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLF 310
+ D + +LI ES+ PVL +GGG +E+ +F G P+ T G G+
Sbjct: 178 KVKYSID---FSRAKELIKESEKPVLLIGGGTRGLGKEINRFAEKIGAPIIYTLNGKGIL 234
Query: 311 PCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATR-AKIVHIDID 369
P D + +G+ GT + A+++ DLL+ G F +F + AK++ +DID
Sbjct: 235 PDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSF------PYVNFLNKSAKVIQVDID 288
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKT 429
++ IGK D+S V +N+ +E K F + +E+ + K S
Sbjct: 289 NSNIGKRLDVDLSYPIP---VAEFLNIDIEEKSDKFYEELKGKKEDWLDSISKQENSLDK 345
Query: 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFG 489
+ PQ I+++ + I+ T G MW + + + + S+ GSMG G
Sbjct: 346 ---PMKPQRVAYIVSQKCKKDAVIV-TDTGNVTMWTARHFRASGEQTFIFSAWLGSMGIG 401
Query: 490 LPAAMGAAVA-NPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYE 548
+P ++GA+ A V+ GDG F M + EL K ++PVKI++ NN LGM +++E
Sbjct: 402 VPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNSKLGM-IKFE 460
Query: 549 DRYFEANRANSFLGDPLRKSEIF-PDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGP 607
+G P +++ PD K AE+ G R+ + K+ I+ L T GP
Sbjct: 461 QE---------VMGYPEWGVDLYNPDFTKIAESIGFKGFRLEEPKEAEEIIEEFLNTKGP 511
Query: 608 YLLDVMVSYQEHVVPMIP 625
+LD +V E PM P
Sbjct: 512 AVLDAIVDPNER--PMPP 527
|
Length = 549 |
| >gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 241 bits (616), Expect = 2e-71
Identities = 153/560 (27%), Positives = 262/560 (46%), Gaps = 49/560 (8%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSL--TRSNIRSILPRHEQGGIFAAEGYA 127
K + +V+ L+ G+ V+ PG + + +L + I+ I RHE+ AA YA
Sbjct: 4 IKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYA 63
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT 187
+ +G GVCL GPG +++ GL DA D +P+LA+ GQV+ LLGTD FQE+ + ++
Sbjct: 64 KLTGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMF 123
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV--QLELAVPNWNQPCKL 245
+ +N+ ++ +++P I+ +A A + VL IP D+ Q N
Sbjct: 124 EDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLT-IPDDLPAQKIKDTTNKTVDTFR 182
Query: 246 PSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTM 305
P+ P +++ KLI ++K PV+ G G ++ EEL F IP+ T
Sbjct: 183 PTVP-----SPKPKDIKKAAKLINKAKKPVILAGLGAKHAKEELLAFAEKAKIPIIHTLP 237
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDF-ATRAKIV 364
G+ P L +G GT A A+ E DLL+ G + D+ +AK +
Sbjct: 238 AKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYV------DYLPKKAKAI 291
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE-SKGVGFM----FDFSAWREELHEQ 419
ID D IGK +V + DAK +++ ++ + F+ + + W + + E
Sbjct: 292 QIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAKWWKWMEED 351
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
+ I P+ + + ++ DD + ++S VG +W+ ++ ++ +
Sbjct: 352 ENNASTP-------IKPERVMAAIQKIADD-DAVLSVDVGTVTVWSARYLNLGTNQKFII 403
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
SS G+MG GLP A+ A +A P + I GDG F M +Q+ +P+ ++++NNQ
Sbjct: 404 SSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNNQ 463
Query: 540 YLGMNVEYEDRY-----FEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV 594
L ++YE + + + ++ D KFAEACG RV K +++
Sbjct: 464 QLAF-IKYEQQAAGELEYAIDLSD-------------MDYAKFAEACGGKGYRVEKAEEL 509
Query: 595 RAAIQLMLETPGPYLLDVMV 614
A + L P ++DV V
Sbjct: 510 DPAFEEALAQDKPVIIDVYV 529
|
Length = 576 |
| >gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 4e-67
Identities = 161/573 (28%), Positives = 245/573 (42%), Gaps = 61/573 (10%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIE--IHQSLTRSNIRSILPRHEQGGIFAAEGYARS 129
A I AL+R GV +F G S+ + + IR I R E G A+GYAR
Sbjct: 16 VAHAIARALKRHGVEQIF----GQSLPSALFLAAEAIGIRQIAYRTENAGGAMADGYARV 71
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
SG V +GP T ++ L +A S+PI+A+ V++ +AFQE+ + + +
Sbjct: 72 SGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQS 131
Query: 190 MTKHNYLVLDVDDIPRI---IKEAFFIATSGRPGPVLIDIPVDVQLEL----AVPNWNQP 242
TK V V RI + +AF ATSGRPGPV++ +P D+ A P N
Sbjct: 132 CTK---WVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLTAAAAAPAAPRSNSL 188
Query: 243 CKLPSCISSLPKE-PDELALRQTLKLIVESKNPVLCVGGG--CLNSSEELRKFVGLTGIP 299
P L + P L + L+ +++ PV+ GGG +S L L G+P
Sbjct: 189 GHFP-----LDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLP 243
Query: 300 VTCTTMGLGLFPCTDELCLRMVGMF-----GTVYANYAVNECDLLLAAGVRFNERMTSKL 354
V T MG G T L L +VG + V E D++L G R N+ T
Sbjct: 244 VATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSW 303
Query: 355 EDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWRE 414
+ +A+ +HID+D E+G+ + + DA+L + L + + + R
Sbjct: 304 SLYPEQAQYIHIDVDGEEVGR-NYEALRLVGDARLTLAALTDALRGRDLAAR---AGRRA 359
Query: 415 ELHEQKKKYPFSYKTFGEEIPPQYAI--------QILNELTD--DEETIISTGVGQHQMW 464
L + E+ P +I+ EL +TI+ +W
Sbjct: 360 ALEPAIAAG---REAHREDSAPVALSDASPIRPERIMAELQAVLTGDTIVVADASYSSIW 416
Query: 465 AIQFYMYKRARQ-LLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAA 523
F +RA LT G +G+G+P A+GA VA PGA V+ + GDG F EL
Sbjct: 417 VANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELET 476
Query: 524 IKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLG---DPLRKSEIFPDMLKFAEA 580
+ +PV I+++NN LG F+ + G D + + D A A
Sbjct: 477 ARRMGVPVTIVVLNNGILG---------FQKHAETVKFGTHTDACHFAAV--DHAAIARA 525
Query: 581 CGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613
CG RV ++ A+ + PGP L++V+
Sbjct: 526 CGCDGVRVEDPAELAQALAAAMAAPGPTLIEVI 558
|
Length = 578 |
| >gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 6e-67
Identities = 158/564 (28%), Positives = 248/564 (43%), Gaps = 57/564 (10%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQS------LTRSNIRSILPRHEQGGIFAAEG 125
++I LE+ GV T F I IH R IR + R E G + A+
Sbjct: 5 VGELIAAFLEQCGVKTAFGV-----ISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADA 59
Query: 126 YARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA--FQEIP- 182
+AR SG GV L S+G G N L++A + P+L ITGQ+ L D E P
Sbjct: 60 HARVSGGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPD 119
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ-LELAVPNWNQ 241
+ + R ++K + V + I+EA +A + GPV ++IP+D+Q E+ +P+
Sbjct: 120 QLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDIQAAEIELPDDLA 179
Query: 242 PCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVT 301
P + EPD A+ + + + ++ P+L +GGG ++ E+++ V L G V
Sbjct: 180 PVHVAV------PEPDAAAVAELAERLAAARRPLLWLGGGARHAGAEVKRLVDL-GFGVV 232
Query: 302 CTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRF--NERMTSKLEDFAT 359
+T G G+ P L V A Y CDLLL G R NE + L
Sbjct: 233 TSTQGRGVVPEDHPASLGAFNNSAAVEALYK--TCDLLLVVGSRLRGNETLKYSLA---L 287
Query: 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVG---FMFDFSAWREEL 416
++ +D D+ G+ D+ + DA V R+ LE + F D A RE
Sbjct: 288 PRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAREAA 347
Query: 417 HEQKKKYPFSYKTFGEEIP---PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKR 473
+K Y + + P+ + ++T IS +++ +++
Sbjct: 348 VADLRKGLGPYAKLVDALRAALPRDGN-WVRDVT------ISNSTWGNRL----LPIFEP 396
Query: 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533
R + + G G +G GL A+GAA+A PG V + GDG ++NL ELA EN + I
Sbjct: 397 -RANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVI 454
Query: 534 LLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD 593
+L+N+ G+ +D + R L PD A + G+P RVT D
Sbjct: 455 VLMNDGGYGVIRNIQDAQYGGRRYYVELHT--------PDFALLAASLGLPHWRVTSADD 506
Query: 594 VRAAIQLMLETPGPYLLDV-MVSY 616
A ++ L GP L++V M+S
Sbjct: 507 FEAVLREALAKEGPVLVEVDMLSI 530
|
Length = 544 |
| >gnl|CDD|132918 cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 1e-66
Identities = 83/155 (53%), Positives = 106/155 (68%)
Query: 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTP 133
D +VEAL+ +GV VF PGGA + + +L RS IR IL RHEQG + A+GYAR++G P
Sbjct: 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKP 60
Query: 134 GVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKH 193
GV LV+SGPG+TN +TGL +AY DSIP+L ITGQ G AFQEI V + R +TK
Sbjct: 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKW 120
Query: 194 NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228
Y V ++IP ++ AF IA SGRPGPV +D+P
Sbjct: 121 AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many the active sites lie between PP and PYR domains on different subunits. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. This subfamily includes pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC catalyzes the conversion of pyruvate to acetaldehyde and CO2 in alcoholic fermentation. IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway in plants and various plant-associated bacteria, it catalyzes the decarboxylation of IPA to IAA. This subfamily also includes the large catalytic subunit of acetohydroxyacid synthase (AHAS). AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate, a precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. Methanococcus jannaschii sulfopyruvate decarboxylase (MjComDE) and phosphonopyruvate decarboxylase (PpyrDc) also belong to this subfamily. PpyrDc is a homotrimeric enzyme having the PP and PYR domains tandemly arranged on the same subunit. It functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. MjComDE is a dodecamer having the PYR and PP domains on different subunits, it has six alpha (PYR/ComD) subunits and six beta (PP/ComE) subunits. MjComDE catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Length = 155 |
| >gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 8e-62
Identities = 145/557 (26%), Positives = 238/557 (42%), Gaps = 58/557 (10%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGV 135
VE L+ G+T F G A ++ + IR I HEQ A+GY R +G G+
Sbjct: 12 FVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGM 71
Query: 136 CLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY 195
+ +GPG+TN +T + AY P++ +T Q K +G FQE + + MTK+
Sbjct: 72 VIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQE 131
Query: 196 LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK--LPSCISSLP 253
V D + ++ F A GP I+IP D + +P L
Sbjct: 132 EVRDPSRMAEVLNRVFDKAKRES-GPAQINIPRDY--------FYGVIDVEIPQ-PVRLE 181
Query: 254 KEP-DELALRQTLKLIVESKNPVLCVGGGCLNSS--EELRKFVGLTGIPVTCTTMGLGLF 310
+ E +L + +L+ E+K PV+ G G + S EE + PV C + F
Sbjct: 182 RGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDAF 241
Query: 311 PCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT---SKLEDFATRAKIVHID 367
P + L + +G G+ A + + D++LA G R N T ++ + AKI+ +D
Sbjct: 242 PGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVD 301
Query: 368 IDSNEIGKVKLPDVSICADAKLVFN------------------RMNMILESKGVGFMFDF 409
I+ + IG K V IC DAK V R +I K
Sbjct: 302 INPDRIGLTKKVSVGICGDAKAVARELLARLAERLAGDAGREERKALIAAEK-------- 353
Query: 410 SAWREEL----HEQ-KKKYPFSYKTFGEEIPPQYAIQILNELTD--DEETIISTGVGQHQ 462
SAW +EL HE ++ + + + Q L E+ E+ I+ST +G +
Sbjct: 354 SAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALREIQKALPEDAIVSTDIGNNC 413
Query: 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELA 522
A + +++ R+ L FG+ G+ PA +GA +A P VV GDG++ +++ E+
Sbjct: 414 SIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISMNEVM 473
Query: 523 AIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACG 582
N PV ++ N G + + ++ N F+G L + + AEA G
Sbjct: 474 TAVRHNWPVTAVVFRNYQWGAEKKNQVDFYN----NRFVGTELDNNVSYA---GIAEAMG 526
Query: 583 IPAARVTKKKDVRAAIQ 599
V ++++ A++
Sbjct: 527 AEGVVVDTQEELGPALK 543
|
Length = 588 |
| >gnl|CDD|217224 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 2e-61
Identities = 81/168 (48%), Positives = 107/168 (63%), Gaps = 2/168 (1%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYAR 128
GAD + EAL+ GV VF PG + + + +L +S IR +L RHEQG FAA+GYAR
Sbjct: 1 MTGADALAEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYAR 60
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQ-EIPVVEVT 187
++G PGV LV+SGPG TN +TGL +AY D IP+L I+GQV LG Q E+ + +
Sbjct: 61 ATGKPGVVLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRGGLQEELDQLALF 120
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELA 235
R +TK V D+IP + AF A SGRPGPV +++P+DVQLE
Sbjct: 121 RPVTKWAERVTSPDEIPEALDRAFRAALSGRPGPVYLELPLDVQLEEV 168
|
Length = 172 |
| >gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Score = 213 bits (543), Expect = 5e-61
Identities = 148/551 (26%), Positives = 242/551 (43%), Gaps = 41/551 (7%)
Query: 77 VEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVC 136
VE L GVT F G A ++ + IR I HEQG A+G+AR +G +
Sbjct: 9 VEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMV 68
Query: 137 LVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYL 196
+ +GPGVTN +T + AY P++ +T + K +G FQE + + + TK+
Sbjct: 69 IGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGH 128
Query: 197 VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP--CKLPSCISSLPK 254
V + ++ F A GP ++IP D + ++P L +
Sbjct: 129 VRHPSRMAEVLNRCFERAWREM-GPAQLNIPRDY--------FYGEIDVEIPR-PVRLDR 178
Query: 255 EP-DELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFP 311
+L Q +L+ E+K PV+ GGG + ++ EE + G PV + + FP
Sbjct: 179 GAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFP 238
Query: 312 CTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT---SKLEDFATRAKIVHIDI 368
+ L + +G G+ A +++ D++LA G R T ++ + AKI+ +D
Sbjct: 239 ASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDA 298
Query: 369 DSNEIGKVKLPDVSICADAKLVFNRMNMILESK---------GVGFMFDFSAWREELHE- 418
++ IG VK V IC DAK + L K + SAW +EL E
Sbjct: 299 NAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEM 358
Query: 419 QKKKYPFSYKTF----GEEIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYK 472
++ PFS EE + Q+L EL E+ I+ST +G A + ++
Sbjct: 359 THERDPFSLDMIVEQRQEEGNWLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFE 418
Query: 473 RARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVK 532
+ R+ L FG+ G+ P +GA +A P VV GDG++ M++ E+ +IPV
Sbjct: 419 KPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSMNEIMTAVRHDIPVT 478
Query: 533 ILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK 592
++ N+ G + + ++ N F+G L F A+A G V K +
Sbjct: 479 AVVFRNRQWGAEKKNQVDFYN----NRFVGTELESELSF---AGIADAMGAKGVVVDKPE 531
Query: 593 DVRAAIQLMLE 603
DV A++ +
Sbjct: 532 DVGPALKKAIA 542
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur [Central intermediary metabolism, Other]. Length = 579 |
| >gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 6e-59
Identities = 104/320 (32%), Positives = 159/320 (49%), Gaps = 16/320 (5%)
Query: 77 VEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVC 136
V LE GV TVF PG ++E+++ L S IR + PRHEQG F A+GYAR SG PGVC
Sbjct: 9 VRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVC 68
Query: 137 LVSSGPGVTNIMTGLMDAYSDSIPILAITG-QVSQKL-LGTDAFQEIPVVE-VTRYMTKH 193
+ +GPG+TNI T + AY+DSIP+L I+ L G E+P + +
Sbjct: 69 FIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAF 128
Query: 194 NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLP 253
++ ++ +D+P ++ AF + S RP PV I+IP+DV A P P+
Sbjct: 129 SHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVLAAPADHLLPAPPTRPA-----R 183
Query: 254 KEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCT 313
P AL Q + + ++ P++ GGG L ++ LR PV T GL P
Sbjct: 184 PGPAPAALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALTINAKGLLPAG 243
Query: 314 DELCLRMVGMFGTVYANYA-VNECDLLLAAGVRFNE---RMTSKLEDFATRAKIVHIDID 369
L +G ++ A A + E D++LA G E + F +++ IDID
Sbjct: 244 HPLL---LGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFD-GGFPLPGELIRIDID 299
Query: 370 SNEIGKVKLPDVSICADAKL 389
+++ + P +++ DA+
Sbjct: 300 PDQLARNYPPALALVGDARA 319
|
Length = 535 |
| >gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 1e-56
Identities = 167/562 (29%), Positives = 252/562 (44%), Gaps = 42/562 (7%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSG 131
AD I + LE+ GV ++ G + + SL R I + RHE+ FAA A+ +G
Sbjct: 6 ADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTG 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
VC S GPG +++ GL D + + +P+LAI + +G+ FQE E+ R +
Sbjct: 66 ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECS 125
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL----ELAVPNWNQPCKLPS 247
+ LV + + +PR++ A A R G ++ +P DV L E A P+W P
Sbjct: 126 HYCELVSNPEQLPRVLAIAMRKAILNR-GVAVVVLPGDVALKPAPERATPHWYHA-PQPV 183
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGL 307
P E LR+ L+ S N L G GC + +EL P+ G
Sbjct: 184 VT------PAEEELRKLAALLNGSSNITLLCGSGCAGAHDELVALAETLKAPIVHALRGK 237
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
+ + M G+ G +A+ CD LL G F R + + T AKI+ ID
Sbjct: 238 EHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYR-----QFYPTDAKIIQID 292
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFD-----FSAWREELHEQKKK 422
I+ +G+ D+ + D K + +LE K D + R+ L +
Sbjct: 293 INPGSLGRRSPVDLGLVGDVKATLAALLPLLEEKTDRKFLDKALEHYRKARKGLDDLAVP 352
Query: 423 YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
G+ I PQY + ++E D+ I + VG +WA ++ R+LL S
Sbjct: 353 SDG-----GKPIHPQYLARQISEFAADD-AIFTCDVGTPTVWAARYLKMNGKRRLLGSFN 406
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
GSM +P A+GA A+PG VV + GDG F M + + ++ +PVKI++ NN LG
Sbjct: 407 HGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIVVFNNSVLG 466
Query: 543 MNVEYEDRYFEANRANSFL--GDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL 600
V E +A +L G L PD AEACGI RV K ++ A+Q
Sbjct: 467 F-VAME------MKAGGYLTDGTDLHN----PDFAAIAEACGITGIRVEKASELDGALQR 515
Query: 601 MLETPGPYLLDVMVSYQEHVVP 622
GP L+DV+ + QE +P
Sbjct: 516 AFAHDGPALVDVVTAKQELAMP 537
|
Length = 574 |
| >gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase | Back alignment and domain information |
|---|
Score = 195 bits (496), Expect = 2e-54
Identities = 143/555 (25%), Positives = 242/555 (43%), Gaps = 34/555 (6%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLT--RSNIRSILPRHEQGGIFAAEGYARS 129
+ +++ LE GV ++ PGG+ +L+ R I I RHE+ G AA A+
Sbjct: 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKL 60
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
+G GVC S+GPG T+++ GL DA D +P+LA+ GQV + D FQE+ +
Sbjct: 61 TGKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYAD 120
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
+ +N + + +P +I EA A + G ++ IPVD + N +
Sbjct: 121 VAVYNRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVDFGWQEIPDNDYYASSVSYQT 179
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGL 309
LP PD A+ + ++ + ++ PV+ G G + EEL IP+ T + G+
Sbjct: 180 PLLP-APDVEAVTRAVQTLKAAERPVIYYGIGARKAGEELEALSEKLKIPLISTGLAKGI 238
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAG--VRFNERMTSKLEDFATRAKIVHID 367
L AN A+ + DL+L G F E + F + ID
Sbjct: 239 IEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFAEVS----KAFKNTKYFIQID 294
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQK--KKY-- 423
ID ++GK D+++ ADAK + +E + W+ + K + Y
Sbjct: 295 IDPAKLGKRHHTDIAVLADAKKALAAILAQVEPRE-----STPWWQANVANVKNWRAYLA 349
Query: 424 PFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
KT G + + +N++ +D + I S VG + + + + +TS+ F
Sbjct: 350 SLEDKTEG-PLQAYQVYRAINKIAED-DAIYSIDVGDININSNRHLKMTPKNKWITSNLF 407
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG- 542
+MG G+P A+ A + P V ++ GDG+F M +Q+L ++PV ++ +N G
Sbjct: 408 ATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSNCTYGF 467
Query: 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ--L 600
+ E ED +G + D K AE G RV K + + A +
Sbjct: 468 IKDEQEDTN------QPLIGVDFNDA----DFAKIAEGVGAVGFRVNKIEQLPAVFEQAK 517
Query: 601 MLETPGPYLLDVMVS 615
++ P L+D ++
Sbjct: 518 AIKQGKPVLIDAKIT 532
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name [Energy metabolism, Aerobic]. Length = 575 |
| >gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 3e-54
Identities = 148/572 (25%), Positives = 236/572 (41%), Gaps = 52/572 (9%)
Query: 65 APDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAE 124
A K K A+ + E L+ +GV +F +P + + + IR ++ R E+ + A+
Sbjct: 15 AEAKTMKVAEAVAEILKEEGVELLFGFPVNELFD---AAAAAGIRPVIARTERVAVHMAD 71
Query: 125 GYAR-SSG-TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIP 182
GYAR +SG GV V GPG N G+ AY DS+P+L + + TD
Sbjct: 72 GYARATSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGS--TDVAPNFE 129
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
+ R++TK V D++P +++ AF +GRPGPV++++PVDV +
Sbjct: 130 SLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVDV--------LAEE 181
Query: 243 C-KLPSCISSLPK---EPDELALRQTLKLIVESKNPVLCVGGGCLNSS--EELRKFVGLT 296
+LP + D + + + L++ ++ PV+ G G L + EL++ L
Sbjct: 182 LDELPLDHRPSRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELAELL 241
Query: 297 GIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLED 356
IPV T G FP L L G + + E D+L G +
Sbjct: 242 EIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTR--SYYGLP 299
Query: 357 FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM-NMILESKGV--GFMFDFSAWR 413
I+H +D ++ K D + DA LV +M + G G +A
Sbjct: 300 MPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEI 359
Query: 414 EELHEQ--KKKYPFSYKTFGEEIP--PQYAIQILNELTDDEETIISTGVGQHQMWAIQFY 469
E + K P K + P P + L D + II+ G + FY
Sbjct: 360 EAVRAAWLAKWMP---KLTSDSTPINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFY 416
Query: 470 MYKRARQLLTSSGFG---SMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKA 526
A + + G+G +G+GL AMGA +A P A+V+++ GD +F M +
Sbjct: 417 ---VASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVR 473
Query: 527 ENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA 586
E IP+ +L+NN +G + RA G D A A G
Sbjct: 474 ERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISG----------DYAAIARALGGYGE 523
Query: 587 RVTKKKDVRAAIQLML---ETPGPYLLDVMVS 615
RV + + A+ L + P LL+V+ S
Sbjct: 524 RVEDPEMLVPALLRALRKVKEGTPALLEVITS 555
|
Length = 565 |
| >gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 1e-53
Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM 516
+G HQMWA ++Y ++ R+ LTS G G+MG+GLPAA+GA +A P VV I GDG F M
Sbjct: 1 DIGCHQMWAARYYRFRPPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQM 60
Query: 517 NLQELAAIKAENIPVKILLINNQYLGM-----NVEYEDRYFEANRANSFLGDPLRKSEIF 571
NLQELA N+P+ ++++NN GM RY P K
Sbjct: 61 NLQELATAVRYNLPITVVVLNNGGYGMTRGQQTPFGGGRYSG----------PDGKDLPP 110
Query: 572 PDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDV 612
D K AEA G ARV +++ A++ LE GP L+DV
Sbjct: 111 VDFAKLAEAYGAKGARVESPEELEEALKEALEHDGPALIDV 151
|
Length = 151 |
| >gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 5e-52
Identities = 156/556 (28%), Positives = 239/556 (42%), Gaps = 50/556 (8%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSG 131
A+ +VE L GV ++ G + I ++ R+ I + RHE+ FAA A+ +G
Sbjct: 6 AEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTG 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEI-P---VVEVT 187
VC S GPG +++ GL DA+ P+LAI + +G+ FQE P VE +
Sbjct: 66 KLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECS 125
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATS-GRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
Y +V + PR++ A I + G ++ +P D+ E A P
Sbjct: 126 GY----CEMVSSAEQAPRVLHSA--IQHAVAGGGVSVVTLPGDIADEPAPEG-----FAP 174
Query: 247 SCISSLPKE--PDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT 304
S IS PD +R I E+K L G G + E+ PV +
Sbjct: 175 SVISPRRPTVVPDPAEVRALADAINEAKKVTLFAGAGVRGAHAEVLALAEKIKAPVGHSL 234
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
G + + M G+ G A+ A++E DLL+ G F + F +
Sbjct: 235 RGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDF------PYDQFLPDVRTA 288
Query: 365 HIDIDSNEIGKVKLPDVSICADAK-LVFNRMNMILESKGVGFMFDFSAWREELHEQKKKY 423
+DID +G+ D+++ D + + ++ E F+ H +K +
Sbjct: 289 QVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVKEKTDRRFLDRMLK----KHARKLEK 344
Query: 424 PFSYKTFGEE----IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
T E I P+Y IL+EL D+ + + G +WA ++ R+++
Sbjct: 345 VVGAYTRKVEKHTPIHPEYVASILDELAADD-AVFTVDTGMCNVWAARYITPNGRRRVIG 403
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
S GSM LP A+GA +A+PG V+ + GDG M L EL +K ++PVK+++ NN
Sbjct: 404 SFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVVVFNNS 463
Query: 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEI---FPDMLKFAEACGIPAARVTKKKDVRA 596
LGM V+ E L D L D A A GI A RV KDVR
Sbjct: 464 TLGM-VKLE-----------MLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVEDPKDVRG 511
Query: 597 AIQLMLETPGPYLLDV 612
A++ PGP L+DV
Sbjct: 512 ALREAFAHPGPALVDV 527
|
Length = 578 |
| >gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central domain | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 2e-47
Identities = 64/136 (47%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 261 LRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCL 318
+ + +L+ +K PV+ GGG S SEELR GIPV T MG G FP L L
Sbjct: 1 IDKAAELLASAKRPVILAGGGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYL 60
Query: 319 RMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKL 378
M+GM GT AN A+ E DL+LA G RF++R T L +FA AKI+HIDID EIGK
Sbjct: 61 GMLGMHGTPAANEALEEADLVLAIGARFDDRGTGSLPEFAPDAKIIHIDIDPAEIGKNYP 120
Query: 379 PDVSICADAKLVFNRM 394
DV I DAK +
Sbjct: 121 VDVPIVGDAKEALEAL 136
|
The central domain of TPP enzymes contains a 2-fold Rossman fold. Length = 136 |
| >gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 3e-47
Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 10/176 (5%)
Query: 441 QILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAV 498
++L L E+ I+ G WA ++ +R R+ LTS+GFG+MG+GLPAA+GAA+
Sbjct: 1 RVLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAAL 60
Query: 499 ANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRAN 558
A P VV I GDG F+M QELA +PV +++ NN G +++ ++ +
Sbjct: 61 AAPDRPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSG 120
Query: 559 SFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
+ L PD AEA G RV +D+ AA+ L GP L++V
Sbjct: 121 TDLS--------NPDFAALAEAYGAKGVRVEDPEDLEAALAEALAAGGPALIEVKT 168
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168 |
| >gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 3e-46
Identities = 137/553 (24%), Positives = 227/553 (41%), Gaps = 42/553 (7%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
+ L+ GV T+F GG ++ IR I RHEQ FAAE +A+ +
Sbjct: 7 AGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTR 66
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
PGV ++++GPGVTN M+ + A + P++ + G+ G + QEI V +T
Sbjct: 67 VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVT 126
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISS 251
K ++ R++ +A A + GPV +D P+D +A P ++
Sbjct: 127 KFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHAFSMA-----DDDGRPGALTE 181
Query: 252 LPKE--PDELALRQTLKLIVESKNPVLCVGGGC-LNSSEE-LRKFVGLTGIPVTCTTMGL 307
LP PD AL + L+ E++ PV+ G +E L + GIPV MG
Sbjct: 182 LPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGR 241
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G+ P L + A+ E D++L GV + R+ F A++VH+D
Sbjct: 242 GVVPADHPL-------AFSRARGKALGEADVVLVVGVPMDFRLG--FGVFGGTAQLVHVD 292
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE-QKKKYPFS 426
+ + + D + + + + D W EEL +
Sbjct: 293 DAPPQRAHHRPVAAGLYGDLSAILSALAGAGGDRT-----DHQGWIEELRTAETAARARD 347
Query: 427 YKTFGEEIPPQYAIQI---LNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
++ P + +++ L L D + +I G G +A ++ R L F
Sbjct: 348 AAELADDRDPIHPMRVYGELAPLLDRDAIVIGDG-GDFVSYAGRYIDPYRPGCWLDPGPF 406
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +G G A+ A +A P VV + GDG+F +L ++ + N+PV ++ NN G+
Sbjct: 407 GCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNNGIWGL 466
Query: 544 NVEYEDRYFEANRANSFLGD--P-LRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL 600
E EA D P R E+ A G VT ++ A++
Sbjct: 467 ----EKHPMEALYGYDVAADLRPGTRYDEV-------VRALGGHGELVTVPAELGPALER 515
Query: 601 MLETPGPYLLDVM 613
+ PYL++V+
Sbjct: 516 AFASGVPYLVNVL 528
|
Length = 542 |
| >gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 8e-43
Identities = 139/559 (24%), Positives = 248/559 (44%), Gaps = 42/559 (7%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G ++++AL+ G+ T++ G ++ + +R I RHEQ +AA +
Sbjct: 5 GFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQ 64
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDA--FQEIPVVEVTRY 189
PGVCL S PG N +T L +A ++ P++ I+G + ++ ++E+ + +
Sbjct: 65 KPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKP 124
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
K Y VL +DI I A A SGRPG V +D+P V L + L +
Sbjct: 125 FAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV-LGQTMEAEKAKKTLVKVV 183
Query: 250 SSLPKE-PDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306
PK+ P ++ + ++L+ ++K P++ +G G + EE+R+FV TGIP +M
Sbjct: 184 DPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMA 243
Query: 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT-SKLEDFATRAKIVH 365
GL P T ++A+ E D+++ G R N ++ K + + AK +
Sbjct: 244 KGLLPDTHPQS-------AAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQ 296
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK--Y 423
+DI+ E+ + + D V + +L + G + + WR + + +K
Sbjct: 297 VDIEPTEMDSNRPIAAPVVGDIGSV---VQALLSAAKNGGVKPPADWRNAIKTKSEKNVA 353
Query: 424 PFSYKTFGEEIPPQY--AIQILNELTDDEETI--ISTGVGQHQMWAIQFYMYKRARQLLT 479
+ + E P Y A++ + ++ D I ++ G + MYK R L
Sbjct: 354 KMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYK-PRHRLD 412
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
+G MG G+ A+ AAV G VV ++GD +F + E+ I N+PV +++ NN
Sbjct: 413 VGTWGVMGIGMGYAIAAAVET-GKPVVALEGDSAFGFSGMEVETICRYNLPVCVVIFNN- 470
Query: 540 YLGMNVEYEDRYFEANRANSFLGDP----LRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595
+ + N DP L + M+K A G VT +++
Sbjct: 471 ---------GGIYRGDDVNVVGADPAPTVLVHGARYDKMMK---AFGGVGYNVTTPDELK 518
Query: 596 AAIQLMLETPGPYLLDVMV 614
AA+ L + P L++ ++
Sbjct: 519 AALNEALASGKPTLINAVI 537
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase [Cellular processes, Detoxification]. Length = 554 |
| >gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 1e-42
Identities = 160/610 (26%), Positives = 263/610 (43%), Gaps = 77/610 (12%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN--IRSILPRHEQGGIFAAEGYARSS 130
AD I+E L GV VF YPG + +L R++ + RHE+ F A +A+ +
Sbjct: 6 ADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFT 65
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G GVCL +SGPG +++ GL DA D +P++AI GQ ++ LG QE+ + +
Sbjct: 66 GEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQS----L 121
Query: 191 TK---HNYLVLDV--DDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK- 244
K ++ + + + ++ A A + R + +P DVQ EL
Sbjct: 122 FKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER-TVTAVILPNDVQ-ELEYEPPPHAHGT 179
Query: 245 LPSCIS-SLPKE-PDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTC 302
+ S + + P+ P + LR+ +++ + + VG G L +++E+ G V
Sbjct: 180 VHSGVGYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGALGATDEVIAVAERLGAGVAK 239
Query: 303 TTMGLGLFPCTDELCLRMV----GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358
+G P D+ L V G+ GT + + ECD LL G F + L
Sbjct: 240 ALLGKAALP--DD--LPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFP--YSEFLPKEG 293
Query: 359 TRAKIVHIDIDSNEIGKVKLP-DVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELH 417
A+ V IDID +G ++ P +V++ DA + +LE K +WRE +
Sbjct: 294 Q-ARGVQIDIDGRMLG-LRYPMEVNLVGDAAETLRALLPLLERK------KDRSWRERIE 345
Query: 418 EQKKKYPFSYKTF-------GEEIPPQYAIQILNE-LTDDEETIISTGVGQHQMW-AIQF 468
+ + ++T + + PQ L+ L D+ I++ G W A
Sbjct: 346 KWVAR---WWETLEARAMVPADPVNPQRVFWELSPRLPDN--AILTADSGSCANWYARDL 400
Query: 469 YMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKA- 526
M + L S +MG +P A+ A A+P V+ + GDG+ MN + EL +
Sbjct: 401 RMRRGMMASL-SGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKY 459
Query: 527 ----ENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDP-LRKSEIFPDM--LKFAE 579
+ + +L++NN+ L V +E R E GDP S+ PD+ +FAE
Sbjct: 460 WRQWSDPRLIVLVLNNRDLNQ-VTWEQRVME--------GDPKFEASQDLPDVPYARFAE 510
Query: 580 ACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP------YDKSFKDT 633
G+ RV + + AA L P +L+V VP +P K+F
Sbjct: 511 LLGLKGIRVDDPEQLGAAWDEALAADRPVVLEVKTDPN---VPPLPPHITLEQAKAFASA 567
Query: 634 ILEDDGRALH 643
+L+ D A
Sbjct: 568 LLKGDPDAGG 577
|
Length = 597 |
| >gnl|CDD|132922 cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 2e-41
Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARS 129
AD+IVE LE GV V+ PG + + +L I I RHE+ FAA A+
Sbjct: 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKL 60
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY 189
+G GVCL SSGPG +++ GL DA D P+LAI GQV LGTD FQE+ ++ + +
Sbjct: 61 TGKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKD 120
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231
+ +N V + +P ++ A A + R G ++ +P DVQ
Sbjct: 121 VAVYNETVTSPEQLPELLDRAIRTAIAKR-GVAVLILPGDVQ 161
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of different subunits. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. Length = 164 |
| >gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 2e-37
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 10/181 (5%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
I P+ LN+ D+ I + VG +WA + ++ + S +MG GLP A
Sbjct: 2 IHPERVAAELNKRAPDD-AIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGA 60
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
+ A +A P V+ + GDG F M + +L N+PV +++ NN LG +++E
Sbjct: 61 IAAKLAYPDRQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVFNNSDLGF-IKWEQEVMG 119
Query: 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613
L + PD K AEA GI RV ++ AA+ L GP ++DV+
Sbjct: 120 QPEFGVDLPN--------PDFAKIAEAMGIKGIRVEDPDELEAALDEALAADGPVVIDVV 171
Query: 614 V 614
Sbjct: 172 T 172
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. Length = 178 |
| >gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-37
Identities = 146/586 (24%), Positives = 226/586 (38%), Gaps = 99/586 (16%)
Query: 84 GVTTVFAYPGGASIEIHQSLTRSNIRSILP----RHEQGGIFAAEGYARSSGTPGVCLVS 139
GV +F + G I ++L + +R LP +EQG AA YA+ + V+
Sbjct: 33 GVFAIFGH--GNVAGIGEALYQ--VRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIYAVT 88
Query: 140 S--GPGVTNIMTGLMDAYSDSIPILAITG-------------QVSQKLLGT----DAFQE 180
S GPG N++T A+ + +P+L + G Q+ Q GT D F+
Sbjct: 89 SSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRP 148
Query: 181 IPVVEVTRYMTKHNYLVLDVDDIPR------IIKEAFFIATS-GRPGPVLIDIPVDVQLE 233
V+RY D I R + A + T GPV + + DVQ E
Sbjct: 149 -----VSRYF----------DRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQDVQAE 193
Query: 234 LAVPNWNQPCKL--PSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEEL 289
++ P PDE L LI +K P++ GGG L S E L
Sbjct: 194 A----YDYPESFFEKRVWRIRRPPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREAL 249
Query: 290 RKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNER 349
R F GIPV T G L L VG+ GT+ AN A E DL++ G R +
Sbjct: 250 RAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDF 309
Query: 350 MTSK--LEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMF 407
T L K +++++ + K + + ADA+ ++ L G+
Sbjct: 310 TTGSKALFKNPGV-KFLNLNVQPFDAY--KHDALPLVADARAGLEALSEALG----GYRT 362
Query: 408 DFSAWREELHEQKKKY------PFSYKTFGEEIPPQ-YAIQILNELTDDEETIISTGVGQ 460
W +E K + P + F +P Q I + D+ ++
Sbjct: 363 AA-GWTDERERLKAAWDAEADAPTAKNHFLNTLPTQTQVIGAVQRTISDDSVVVCAAGSL 421
Query: 461 ----HQMWAIQFYMYKRARQLLT---SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513
H++W RA T GF MG+ + +GA A P V + GDGS
Sbjct: 422 PGDLHKLW--------RAGVPGTYHLEYGFSCMGYEIAGGLGAKAAEPDREVYVMVGDGS 473
Query: 514 FIMNLQELAAIKAENIPVKILLINNQYLG-MNVEYEDRYFEANRANSF---LGDPLRKSE 569
++M ELA + ++L++N+ G +N R A SF L D + E
Sbjct: 474 YMMLNSELATSVMLGKKIIVVLLDNRGYGCIN-----RLQMATGGASFNNLLRDTDHEEE 528
Query: 570 IFP-DMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
I D AE+ G A +V +++ AA+ + ++ +
Sbjct: 529 ILQVDFAAHAESYGAKAYKVGTIEELEAALADAKASDRTTVIVIDT 574
|
Length = 617 |
| >gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-37
Identities = 117/506 (23%), Positives = 206/506 (40%), Gaps = 73/506 (14%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARSSG 131
D + + L + G+ ++F PG ++ + + + +R + +E +AA+GYAR +G
Sbjct: 7 GDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG 66
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITG------QVSQKL----LGT---DAF 178
+ + G G + + G+ +Y++ +P++ I G Q S L LG F
Sbjct: 67 I-SALVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVF 125
Query: 179 QEI--PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAV 236
+ + +T N +I R+I+ A + PV I +P DV
Sbjct: 126 HRMSKEITCAQAMLTDIN---TAPREIDRVIRTA--LKQRR---PVYIGLPADVA----- 172
Query: 237 PNWNQPCKLPSC-ISSLPKEPD----ELALRQTLKLIVESKNPVLCVGGGCLNS---SEE 288
+ P + P + K D + +LI ++K PV+ + ++ +E
Sbjct: 173 ---DLPIEAPLTPLDLQLKTSDPEALSEVIDTIAELINKAKKPVI-LADALVSRFGLEKE 228
Query: 289 LRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMF-GTVYANY---AVNECDLLLAAGV 344
L+K + TG PV MG G+ DE +G++ G + AV DL+L GV
Sbjct: 229 LKKLINATGFPVATLPMGKGVI---DESHPNYLGVYNGKLSEPEVREAVESADLILTIGV 285
Query: 345 RFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVG 404
+ T A I+ I DS +I ++S+ K + ++ +
Sbjct: 286 LLTDFNTGGFTYQYKPANIIEIHPDSVKIKDAVFTNLSM----KDALQELAKKIDKRN-- 339
Query: 405 FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIS-TGVGQHQM 463
SA + P Y E + ++ + + II+ TG
Sbjct: 340 ----LSAPPVAYP--ARTPPTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGA 393
Query: 464 WAIQFYMYKRAR---QLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQE 520
I+ K A Q L +GS+G+ LPAA+GAA+A P V+ GDGS + +QE
Sbjct: 394 LDIRLP--KGATFISQPL----WGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQE 447
Query: 521 LAAIKAENIPVKILLINNQYLGMNVE 546
++ + + I ++NN G +E
Sbjct: 448 ISTMIRWGLKPIIFVLNND--GYTIE 471
|
Length = 557 |
| >gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-34
Identities = 153/582 (26%), Positives = 248/582 (42%), Gaps = 87/582 (14%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTR----SNIRSILPRHEQ--GGIFAAEG 125
G ++++AL+ G+ T++ G I I L R IR I RHEQ G AA G
Sbjct: 12 GFHLVIDALKLNGIDTIYGVVG---IPI-TDLARLAQAEGIRYIGFRHEQSAGNAAAAAG 67
Query: 126 YARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL--LGTDAFQEIPV 183
+ + PGVCL S PG N +T L +A ++ P++ I+G +++ L ++E+
Sbjct: 68 FL--TQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125
Query: 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV----------QLE 233
+ + K + V +DI + A A SGRPG V +D+P V
Sbjct: 126 LNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADEALTS 185
Query: 234 LAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRK 291
L P +LP+ P+ A+ + L L+ ++K P++ +G G + E++R+
Sbjct: 186 LVKVVDPAPAQLPA--------PE--AVDRALDLLKKAKRPLIILGKGAAYAQADEQIRE 235
Query: 292 FVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT 351
FV TGIP +M GL P T + A+ D++L G R N +
Sbjct: 236 FVEKTGIPFLPMSMAKGLLPDTHPQS-------AAAARSLALANADVVLLVGARLN-WLL 287
Query: 352 S--KLEDFATRAKIVHIDIDSNEIGKVKLPDVSICA----DAKLVFNRMNMILESKGVGF 405
S K + + K + IDI+ EI + I A D V M +L
Sbjct: 288 SHGKGKTWGADKKFIQIDIEPQEIDS----NRPIAAPVVGDIGSV---MQALLAGLKQNT 340
Query: 406 MFDFSAWREELHEQKKK--YPFSYKTFGEEIPPQY--AIQILNELTDDEETIISTGVGQH 461
+ W + L E+K+K + K + P + A+ + ++ + I G +
Sbjct: 341 FKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENPDIYLVNEGAN 400
Query: 462 QMWAIQFY-----MYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM 516
+ MYK R L +G MG G+ A+ AAV G VV I+GD +F
Sbjct: 401 ---TLDLARNIIDMYK-PRHRLDCGTWGVMGIGMGYAIAAAVET-GKPVVAIEGDSAFGF 455
Query: 517 NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDP----LRKSEIFP 572
+ E+ I N+PV +++ NN Y R + N + + GDP L +
Sbjct: 456 SGMEVETICRYNLPVTVVIFNN-----GGIY--RGDDVNLSGA--GDPSPTVLVHHARYD 506
Query: 573 DMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
M EA G VT ++R A+ + + P L++V++
Sbjct: 507 KM---MEAFGGVGYNVTTPDELRHALTEAIASGKPTLINVVI 545
|
Length = 569 |
| >gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-34
Identities = 129/572 (22%), Positives = 214/572 (37%), Gaps = 75/572 (13%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSI-LPR-----HEQGGIFAA 123
A++ +E L+ GV +F G I ++ R+ LP HE I A
Sbjct: 7 YTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMA 66
Query: 124 EGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQ--VSQK-LLGT----- 175
GYA +G P +V G N + G+ +A IP+L G+ +++ LG+
Sbjct: 67 HGYALVTGKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRI 126
Query: 176 ----DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231
+ + +V R K +Y + D I ++ A IA S GPV + +P +V
Sbjct: 127 HWTQEMRDQGGLV---REYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV- 182
Query: 232 LELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCV--GGGCLNSSEEL 289
L VP + P PD + + +++ ++ PV+ G L
Sbjct: 183 LAEEVPEVKADAGRQMAPA--PPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFASL 240
Query: 290 RKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLA--AGVRFN 347
R+ IPV G + +D + + E DL+L + V +
Sbjct: 241 RRLAEELAIPV-VEYAGEVVNYPSDH------PLHLGPDPRADLAEADLVLVVDSDVPWI 293
Query: 348 ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLP------DVSICADAKLVFNRMNMILESK 401
K A+++ ID+D K ++P D+ I AD +++ L+S
Sbjct: 294 P----KKIRPDADARVIQIDVDPL---KSRIPLWGFPCDLCIQADTSTALDQLEERLKSL 346
Query: 402 GVGFMFDFSAWREELHEQ------KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIS 455
R + E K+ I P Y L E+ D+ + I++
Sbjct: 347 ASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYLSYCLGEVADEYDAIVT 406
Query: 456 T-GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSF 514
Q + G +G+ L AA+GA +A P +V+ GDGSF
Sbjct: 407 EYPFVPRQARLNKP------GSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSF 460
Query: 515 IMNLQE--LAAIKAENIPVKILLINNQYLG------MNVEYEDRYFEANRANSFLGDPLR 566
I + E + +PV +++ NN + V Y + Y A R +F G
Sbjct: 461 IFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEV-YPEGY--AARKGTFPGTDFD 517
Query: 567 KSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
PD K AEA G RV ++++ A+
Sbjct: 518 PR---PDFAKIAEAFGGYGERVEDPEELKGAL 546
|
Length = 569 |
| >gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 5e-32
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 3/156 (1%)
Query: 74 DIIVEALERQGVTTVFAYPGGASIEI-HQSLTRSNIRSILPRHEQGGIFAAEGYARSSGT 132
E L GV VF YPG + HE G AA GYAR+ G
Sbjct: 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG- 59
Query: 133 PGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTK 192
P V +V+SG G+ N + GL DA ++ +P++ + G FQ + + + R + +
Sbjct: 60 PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPE 119
Query: 193 HNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228
N ++P I A A + GPV++ +P
Sbjct: 120 ANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate decarboxylase (ComDE), and the E1 component of human pyruvate dehydrogenase complex (E1- PDHc) the PYR and PP domains appear on different subunits. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. For many of these enzymes the active sites lie between PP and PYR domains on different subunits. However, for the homodimeric enzymes 1-deoxy-D-xylulose 5-phosphate synthase (DXS) and Desulfovibrio africanus pyruvate:ferredoxin oxidoreductase (PFOR), each active site lies at the interface of the PYR and PP domains from the same subunit. Length = 154 |
| >gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-28
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 12/184 (6%)
Query: 436 PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMG 495
PQ + L + D++ ++ VG H++W ++Y L S+G +MG LP A+G
Sbjct: 1 PQRIVHDLRAVMGDDDIVLLD-VGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIG 59
Query: 496 AAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM-NVEYEDRYFEA 554
A + P VV + GDG F+MN QEL IP+ +L+ N+ G+ + E Y
Sbjct: 60 AKLVYPDRKVVAVSGDGGFMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRD 119
Query: 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
+ + G+ PD +K+AE+ G R+ D+ ++ L G +++D V
Sbjct: 120 SGVD--FGN--------PDFVKYAESFGAKGYRIESADDLLPVLERALAADGVHVIDCPV 169
Query: 615 SYQE 618
Y E
Sbjct: 170 DYSE 173
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. Length = 177 |
| >gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
+ P+Y L ++ I+ V Q R T G G +G+GLPAA
Sbjct: 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQL-PLTRPGSYFTLRG-GGLGWGLPAA 58
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ-YLGMNVEYEDRYF 552
+GAA+ANP VV I GDGSF+ +Q L +PV ++++NN+ Y + +
Sbjct: 59 VGAALANPDRKVVAIIGDGSFMYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGP 118
Query: 553 EANRANSF----LGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPY 608
E N+ L DP D A+A G+ A RV +++ A++ L GP
Sbjct: 119 EGPGENAPDGLDLLDPG------IDFAAIAKAFGVEAERVETPEELDEALREALAEGGPA 172
Query: 609 LLDVMV 614
L++V+V
Sbjct: 173 LIEVVV 178
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Length = 178 |
| >gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 1e-21
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
S+G+G++G+GLPAA+GAA+ P VV + GDG L ELA+ ++P+ +LL NN
Sbjct: 403 STGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVLLWNND 462
Query: 540 YLGMNVEYEDRYFEANRANSFLG-DPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
G E R + R +G DP PD + A A G A RV + ++AA+
Sbjct: 463 GYG-----EIRRYMVARDIEPVGVDPYT-----PDFIALARAFGCAAERVADLEQLQAAL 512
Query: 599 QLMLETPGPYLLDVMVSYQEHVV 621
+ PGP L++V + V
Sbjct: 513 RAAFARPGPTLIEVDQACWFAAV 535
|
Length = 535 |
| >gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 9e-21
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
Query: 436 PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMG 495
P + L E D+ I+S G G WA ++ R L + FG++G GL A+
Sbjct: 1 PYRVLHELQEALPDDAIIVSDG-GNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIA 59
Query: 496 AAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555
AA+A P VV ++GDG+F + EL N+P+ +++ NN ++ + +
Sbjct: 60 AALARPDKRVVLVEGDGAFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLG 119
Query: 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVS 615
+ L R AEA G VT ++++ A++ L + P L++V++
Sbjct: 120 LPVTTLLPDTRYD-------LVAEAFGGKGELVTTPEELKPALKRALASGKPALINVIID 172
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. Length = 172 |
| >gnl|CDD|238964 cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 5e-17
Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
I PQ + +N+ + ++T +G Q+ Q + R + G +G+ +PAA
Sbjct: 8 IKPQRVYEEMNKAFGRDVRYVTT-IGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAA 66
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
+G A A+P VV + GD F ++ELA IP +L+NN YLG+ + R F+
Sbjct: 67 LGVAAADPDRQVVALSGDYDFQFMIEELAVGAQHRIPYIHVLVNNAYLGL-IRQAQRAFD 125
Query: 554 ANRANSFLGDPLRKSEIFP---DMLKFAEACGIPAARVTKKKDVRAAIQ----LMLETPG 606
+ + + + SE+ D +K AE G A RVTK +++ AA + LM E
Sbjct: 126 MDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRV 185
Query: 607 PYLLDVMV 614
P +++ ++
Sbjct: 186 PVVVEAIL 193
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. Length = 202 |
| >gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 8e-17
Identities = 134/575 (23%), Positives = 223/575 (38%), Gaps = 90/575 (15%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILP----RHEQGGIFAAEGYAR 128
A+ ++ AL+ +G +F PG ++ + + + ILP HE FAA+ AR
Sbjct: 3 AEALLRALKDRGAQEMFGIPGDFALPFFKVIEET---GILPLHTLSHEPAVGFAADAAAR 59
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQ--VSQKLLGTDAFQEIPVVEV 186
GT GV V+ G G N++ + AY++ P++ I+G ++ G + ++
Sbjct: 60 YRGTLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDS 119
Query: 187 TRYMTKH---NYLVLD-----VDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPN 238
+ K + VLD +I R++ A S PV ++IP D+
Sbjct: 120 QFQVFKEVTCDQAVLDDPATAPAEIARVLGSA--RELSR---PVYLEIPRDMV------- 167
Query: 239 WNQPCKLPSCISSLPKEPDELA--LRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLT 296
N + + P + D L + L + + +PV+ V E+R++ GL
Sbjct: 168 -NAEVEPVPDDPAWPVDRDALDACADEVLARMRSATSPVMMVC-------VEVRRY-GLE 218
Query: 297 ----------GIPVTCTTMGLGLFPCTDELCL-RMVGMFGTVYANYAVNECDLLLAAGVR 345
G+PV T MG GL L +G+ G + V E D LL GV
Sbjct: 219 AKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVI 278
Query: 346 FNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGF 405
++ + + + +H + +G D+ + A LV + +L
Sbjct: 279 LSDTNFAVSQRKIDLRRTIHAFDRAVTLGYHVYADIPL---AGLV----DALLALLCGLP 331
Query: 406 MFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465
D + + H YP + E I P + +N+ GQ + A
Sbjct: 332 PSDRTTRGKGPH----AYPRGLQADAEPIAPMDIARAVNDRFARH--------GQMPLAA 379
Query: 466 ----IQFYMYKRARQLLTSSGF-GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQE 520
F L + G+ MGFG+PA +GA + I+ + GDG+F M E
Sbjct: 380 DIGDCLFTAMDMDDAGLMAPGYYAGMGFGVPAGIGAQCTSGKRILTLV-GDGAFQMTGWE 438
Query: 521 LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEA 580
L + I ++L NN M R F+ A + L D F DM A
Sbjct: 439 LGNCRRLGIDPIVILFNNASWEML-----RVFQPESAFNDLDD-----WRFADM---AAG 485
Query: 581 CGIPAARVTKKKDVRAAIQLMLETPGPY-LLDVMV 614
G RV + ++ AA+ T G + L++ M+
Sbjct: 486 MGGDGVRVRTRAELAAALDKAFATRGRFQLIEAML 520
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. Length = 535 |
| >gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 1e-16
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 27/218 (12%)
Query: 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTR---SNIRSILPRHEQGGIFAAEGYARSS 130
D ++ L R G+TTVF PG S E+ R + R +L E + A+GYA+++
Sbjct: 16 DATIDLLRRFGITTVFGNPG--STEL--PFLRDFPDDFRYVLGLQEAVVVGMADGYAQAT 71
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAF------QEIPVV 184
G + S GV N M L A+ + P++ GQ ++ +L + F E+P
Sbjct: 72 GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELP-- 129
Query: 185 EVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK 244
+ K + +D+P I A+ IA GPV + IP D +W+QP +
Sbjct: 130 ---KPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD--------DWDQPAE 178
Query: 245 -LPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGG 281
LP+ S PD AL + + ++ P L VG
Sbjct: 179 PLPARTVSSAVRPDPAALARLGDALDAARRPALVVGPA 216
|
Length = 530 |
| >gnl|CDD|132434 TIGR03393, indolpyr_decarb, indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 2e-16
Identities = 114/514 (22%), Positives = 205/514 (39%), Gaps = 78/514 (15%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSG 131
D +++ L G+ +F PG +++ + S +I + +E +AA+GYAR G
Sbjct: 4 GDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG 63
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT----------GQVSQKLLGTDAFQEI 181
L + G G + + G+ +Y++ +P++ I G++ LG F+
Sbjct: 64 A-AALLTTFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF 122
Query: 182 -----PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAV 236
V +T+ N +I R+I A RPG + +PVDV +
Sbjct: 123 YRMAAEVTVAQAVLTEQNATA----EIDRVITTAL---RERRPG--YLMLPVDVAAKAVT 173
Query: 237 P-----NWNQPCKLPSCISSL-PKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELR 290
P ++P S + + ++LA+ + + L+ + L + G L+
Sbjct: 174 PPVNPLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLAD----FLALRHG---LKHALQ 226
Query: 291 KFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYA--------VNECDLLLAA 342
K+V +P MG G+ DE + G +GT Y+ A + D ++
Sbjct: 227 KWVKEVPMPHATLLMGKGIL---DE---QQAGFYGT-YSGSASTGAVKEAIEGADAVICV 279
Query: 343 GVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKG 402
GVRF + +T+ T + + + + +G V + + DA + +
Sbjct: 280 GVRFTDTITAGFTHQLTPEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVEL-----CEH 333
Query: 403 VGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462
G M+ S + + S + F + + Q ++ D II G
Sbjct: 334 AGLMWSSSGAIPFPQPDESRSALSQENFWQTL--QTFLR-----PGD---IILADQGTSA 383
Query: 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELA 522
A + + +GS+G+ LPAA GA A P V+ + GDGS + +QEL
Sbjct: 384 FGAADLRLPADV-NFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELG 442
Query: 523 AIKAENIPVKILLINNQYLGMNVEY-----EDRY 551
++ + IL++NN+ G VE E RY
Sbjct: 443 SMLRDKQHPIILVLNNE--GYTVERAIHGAEQRY 474
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria [Central intermediary metabolism, Other]. Length = 539 |
| >gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 6e-16
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 441 QILNEL--TDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAV 498
Q+L EL E+ I+ST +G A + +++ R + FG+ G+ LPA +GA
Sbjct: 8 QVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKA 67
Query: 499 ANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRAN 558
A P VV I GDG++ M++ E+ +PV ++ N+ G + + ++ N
Sbjct: 68 AAPDRPVVAIAGDGAWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYN----N 123
Query: 559 SFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ 599
F+G L K AEACG V K +DV A+Q
Sbjct: 124 RFVGTELES----ESFAKIAEACGAKGITVDKPEDVGPALQ 160
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. Length = 196 |
| >gnl|CDD|238961 cd02003, TPP_IolD, Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 7e-16
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 36/194 (18%)
Query: 439 AIQILNELTDDEETIISTGVGQ----HQMWAIQFYMYKRARQLLT---SSGFGSMGFGLP 491
+ LNE D++ +I+ H++W RAR G+ MG+ +
Sbjct: 4 VLGALNEAIGDDDVVINAAGSLPGDLHKLW--------RARTPGGYHLEYGYSCMGYEIA 55
Query: 492 AAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN----------QYL 541
A +GA +A P V + GDGS++M E+ E + + I+L +N +
Sbjct: 56 AGLGAKLAKPDREVYVLVGDGSYLMLHSEIVTAVQEGLKIIIVLFDNHGFGCINNLQEST 115
Query: 542 GM---NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
G E+ DR E+ + + G L D A + G +V ++++AA+
Sbjct: 116 GSGSFGTEFRDRDQESGQLD---GALLPV-----DFAANARSLGARVEKVKTIEELKAAL 167
Query: 599 QLMLETPGPYLLDV 612
+ ++ +
Sbjct: 168 AKAKASDRTTVIVI 181
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. Length = 205 |
| >gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-15
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 31/152 (20%)
Query: 476 QLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILL 535
+ ++ +GS+G+ +PAA+GAA+A P V+ + GDGSF M +QEL+ + + I L
Sbjct: 42 RFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFL 101
Query: 536 INNQ-YL------GMNVEYED----RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP 584
INN Y G Y D Y F G G
Sbjct: 102 INNDGYTIERAIHGPEASYNDIANWNY--TKLPEVFGGGG-----------------GGL 142
Query: 585 AARVTKKKDVRAAIQLMLETP-GPYLLDVMVS 615
+ RV + ++ A++ L L++V++
Sbjct: 143 SFRVKTEGELDEALKDALFNRDKLSLIEVILP 174
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. Length = 183 |
| >gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-15
Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 24/149 (16%)
Query: 477 LLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536
LT +G G++G GLP A GAAVA P V+ + GDGS + +Q L EN+ V ++
Sbjct: 379 WLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIF 437
Query: 537 NN-QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDML----------KFAEACGIPA 585
N Y + E A G+P ++ DML AE G+PA
Sbjct: 438 ANRAYAILRGEL---------ARVGAGNPGPRA---LDMLDLDDPDLDWVALAEGMGVPA 485
Query: 586 ARVTKKKDVRAAIQLMLETPGPYLLDVMV 614
RVT ++ A+ L PGP+L++ +V
Sbjct: 486 RRVTTAEEFADALAAALAEPGPHLIEAVV 514
|
Length = 514 |
| >gnl|CDD|132920 cd07037, TPP_PYR_MenD, Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1- carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 2e-12
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 13/163 (7%)
Query: 75 IIVEALERQGVTTVFAYPGGAS----IEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS 130
+VE L+R GV V PG S + + + + E+ F A G A++S
Sbjct: 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEH-PEFRLHVRV--DERSAAFFALGLAKAS 58
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G P + +SG V N++ +++AY +P+L +T +L GT A Q I V +
Sbjct: 59 GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDY 118
Query: 191 TKHNYLV------LDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227
+ + + D+ + R+ A A S PGPV +++P
Sbjct: 119 VRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1- carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Escherichia coli MenD (EcMenD) is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of different subunits. EcMenD catalyzes a Stetter-like conjugate addition of alpha-ketoglutarate to isochorismate, leading to the formation of SEPHCHC and carbon dioxide, this addition is the first committed step in the biosynthesis of vitamin K2 (menaquinone). Length = 162 |
| >gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 26/192 (13%)
Query: 431 GEEIPPQYAIQILNELTDD-----EETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGS 485
GE + + +Q L L EE + M M ++ +SG
Sbjct: 356 GEPLSVAFVLQTLAALRPADAIVVEEAPSTRPA----MQE-HLPMRRQGSFYTMASG--G 408
Query: 486 MGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ-YLGMN 544
+G+GLPAA+G A+A PG V+ + GDGS + ++Q L + +PV +++NN Y +
Sbjct: 409 LGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNNGRYGAL- 467
Query: 545 VEYEDRYFEANRANSFLGDPLRKSEIFP--DMLKFAEACGIPAARVTKKKDVRAAIQLML 602
R+F A F + ++ P D + A G A RV+ ++ A+ L
Sbjct: 468 -----RWF----APVFGVRDVPGLDL-PGLDFVALARGYGCEAVRVSDAAELADALARAL 517
Query: 603 ETPGPYLLDVMV 614
GP L++V V
Sbjct: 518 AADGPVLVEVEV 529
|
Length = 530 |
| >gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 9e-11
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ-YLG 542
GS+G GLP A GAAVA P VV GDG +Q L + EN+ V +++ N+ Y
Sbjct: 389 GSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVTVVIFANRSYAI 448
Query: 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML 602
+N E + + N+ L E+ + +K AE G+ A+R T ++ A +
Sbjct: 449 LNGELQRVGAQGAGRNALSMLDLHNPEL--NWMKIAEGLGVEASRATTAEEFSAQYAAAM 506
Query: 603 ETPGPYLLDVMV 614
GP L++ M+
Sbjct: 507 AQRGPRLIEAMI 518
|
Length = 518 |
| >gnl|CDD|232855 TIGR00173, menD, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 76/324 (23%), Positives = 122/324 (37%), Gaps = 51/324 (15%)
Query: 75 IIVEALERQGVTTVFAYPGGAS----IEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS 130
++VE L R GV V PG S + + + R + + E+ F A G A++S
Sbjct: 4 VLVEELVRLGVRHVVISPGSRSTPLALALAE-HPRLRVHVHI--DERSAGFFALGLAKAS 60
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G P + +SG V N++ +++AY +P++ +T +L G A Q I +
Sbjct: 61 GRPVAVVCTSGTAVANLLPAVIEAYYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSY 120
Query: 191 TKHNY-LVLDVDDIP-----RIIKEAFFIATSGRPGPVLIDIP-----VDVQLELAVPNW 239
+ + L L D P + A A PGPV I++P L + W
Sbjct: 121 VRWSVDLPLPEADEPLRYLRSTVDRAVAQAQGAPPGPVHINVPFREPLYPDPLLQPLQPW 180
Query: 240 NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS-SEELRKFVGLTGI 298
+P+ +S+ P D +L + ++K ++ G +E L G
Sbjct: 181 -LRSGVPT-VSTGPPVLDPESLDDLWDRLRQAKRGLIIAGPLAGAEDAEALAALAEALGW 238
Query: 299 PVTCTTMGLGLFPCTDELC-LRMVGMFGTVYANYAVNECDLLLAAG-----------VRF 346
P+ D L LR G V +Y DLLLA +RF
Sbjct: 239 PLLA-----------DPLSGLR-GGPHPLVIDHY-----DLLLANAELREELQPDLVIRF 281
Query: 347 NERMTSK-LEDFATRAKIVHIDID 369
SK L + R + +D
Sbjct: 282 GGPPVSKRLRQWLARQPAEYWVVD 305
|
MenD was thought until recently to act as SHCHC synthase, but has recently been shown to act instead as SEPHCHC synthase. Conversion of SEPHCHC into SHCHC and pyruvate may occur spontaneously but is catalyzed efficiently, at least in some organisms, by MenH (see TIGR03695). 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 430 |
| >gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 9/214 (4%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSS 130
GAD +V+ L GV FA PG + + +L R +R +L E AA+GY R +
Sbjct: 7 GADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIA 66
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G P V L+ GPG+ N + L +A + PI+ I G + + L DA + R +
Sbjct: 67 GKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPV 126
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
++ + + + A A S G + +P DV WN+ +
Sbjct: 127 SRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVA-------WNEAAYAAQPLR 179
Query: 251 SLPKEP-DELALRQTLKLIVESKNPVLCVGGGCL 283
+ P + + L+ K L + G L
Sbjct: 180 GIGPAPVAAETVERIAALLRNGKKSALLLRGSAL 213
|
Length = 518 |
| >gnl|CDD|239469 cd03372, TPP_ComE, Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 52/199 (26%), Positives = 75/199 (37%), Gaps = 45/199 (22%)
Query: 439 AIQILNELTDDEETIISTGVGQHQMWAIQ-----FYMYKRARQLLTSSGFGSMGFGLPAA 493
AI+ L DE + + G +++A FYM GSMG
Sbjct: 4 AIKTLIADLKDELVVSNIGFPSKELYAAGDRPLNFYM------------LGSMGLASSIG 51
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI--NNQY--LGMNVEYED 549
+G A+A P ++V IDGDGS +MNL LA I AE I+++ N Y G +
Sbjct: 52 LGLALAQPRKVIV-IDGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAG 110
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLM-LETPGPY 608
+ D+ A+ACG+ V A + + GP
Sbjct: 111 KKT--------------------DLEAVAKACGLD--NVATVASEEAFEKAVEQALDGPS 148
Query: 609 LLDVMVSYQEHVVPMIPYD 627
+ V + VP IP D
Sbjct: 149 FIHVKIKPGNTDVPNIPRD 167
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. Length = 179 |
| >gnl|CDD|132340 TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 27/182 (14%)
Query: 439 AIQILNELTDDEETIIS-TGVGQHQMWAI-QFYMYKRARQLLTSSGFGSMGFGLPAAMGA 496
AI + + D I+S TG +++ + AR LT GSMG A+G
Sbjct: 177 AIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFLT---VGSMGHASQIALGL 233
Query: 497 AVANPGAIVVDIDGDGSFIMNLQELAAIKAENIP--VKILLINNQYLGMNVEYEDRYFEA 554
A+A P VV +DGDG+ +M++ LA I + + +L N +
Sbjct: 234 ALARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAH-------------- 279
Query: 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VTKKKDVRAAIQLMLETPGPYLLDVM 613
+S G P + D + A+ACG V+ +++ A+ GP L++V
Sbjct: 280 ---DSVGGQPTVSQHL--DFAQIAKACGYAKVYEVSTLEELETALTAASSANGPRLIEVK 334
Query: 614 VS 615
V
Sbjct: 335 VR 336
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (AEP). Length = 361 |
| >gnl|CDD|234373 TIGR03846, sulfopy_beta, sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 36/195 (18%)
Query: 439 AIQILNELTDDEETIISTGVGQHQMWAIQ-----FYMYKRARQLLTSSGFGSMGFGLPAA 493
AI+ + +DE + + GV +++AI+ FYM GSMG
Sbjct: 4 AIRAIASYLEDELVVSNIGVPSKELYAIRDRPLNFYM------------LGSMGLASSIG 51
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
+G A+A ++V IDGDGS +MNL L I AE+ IL+I +
Sbjct: 52 LGLALATDRTVIV-IDGDGSLLMNLGVLPTIAAESPKNLILVILD--------------- 95
Query: 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIP-AARVTKKKDVRAAIQLMLETPGPYLLDV 612
N A G+ + D+ A+A GI +V ++++R A++ L GP + V
Sbjct: 96 -NGAYGSTGNQPTPASRRTDLELVAKAAGIRNVEKVADEEELRDALK-ALAMKGPTFIHV 153
Query: 613 MVSYQEHVVPMIPYD 627
V VP IP
Sbjct: 154 KVKPGNAKVPNIPLS 168
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PMID:19581363). Length = 181 |
| >gnl|CDD|239468 cd03371, TPP_PpyrDC, Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-09
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 27/182 (14%)
Query: 439 AIQILNELTDDEETIIST-GVGQHQMWAIQ-FYMYKRARQLLTSSGFGSMGFGLPAAMGA 496
AI+I+ ++ST G+ +++ ++ A+ LT GSMG A+G
Sbjct: 4 AIEIVLSRAPATAAVVSTTGMTSRELFELRDRPGGGHAQDFLTV---GSMGHASQIALGI 60
Query: 497 AVANPGAIVVDIDGDGSFIMNLQELAAIKAENIP--VKILLINNQYLGMNVEYEDRYFEA 554
A+A P VV IDGDG+ +M++ LA I + I+L N +
Sbjct: 61 ALARPDRKVVCIDGDGAALMHMGGLATIGGLAPANLIHIVLNNGAH-------------- 106
Query: 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VTKKKDVRAAIQLMLETPGPYLLDVM 613
+S G P ++ + A+ACG A V +++ AA+ L GP ++V
Sbjct: 107 ---DSVGGQPTVSFDV--SLPAIAKACGYRAVYEVPSLEELVAALAKALAADGPAFIEVK 161
Query: 614 VS 615
V
Sbjct: 162 VR 163
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. Length = 188 |
| >gnl|CDD|132921 cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 6e-09
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 76 IVEALERQGVTTVFAYPGGASIEIHQSL-TRSNIRSILPRHEQGGIFAAEGYARSSGTPG 134
++E L++ GV VF PG ++ + ++ +R + +E +AA+GYAR G G
Sbjct: 3 LLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKG-LG 61
Query: 135 VCLVSSGPGVTNIMTGLMDAYSDSIPILAITG 166
+ + G G + + G+ AY++ +P++ I G
Sbjct: 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many the active sites lie between PP and PYR domains on different subunits. PDC catalyzes the conversion of pyruvate to acetaldehyde and CO2 in alcoholic fermentation. IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway in plants and various plant-associated bacteria, it catalyzes the decarboxylation of IPA to IAA. Also belonging to this group is Mycobacterium tuberculosis alpha-keto acid decarboxylase (MtKDC) which participates in amino acid degradation via the Ehrlich pathway, and Lactococcus lactis branched-chain keto acid decarboxylase (KdcA) an enzyme identified as being involved in cheese ripening, which exhibits a very broad substrate range in the decarboxylation and carboligation reactions. Length = 162 |
| >gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 13/181 (7%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGI-FAAEGYARSSG 131
A +I+E R G+T PG S + + + + + + ++ + F A GYAR S
Sbjct: 304 ASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSL 363
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVE----VT 187
P V + SSG V+N++ +++A D +P+L +T +L A Q I V
Sbjct: 364 KPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFV 423
Query: 188 RYMTKHNYLVLDVDDIP-RII----KEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
R+ L D IP R++ A ATS GPV I+ P L+ + NW
Sbjct: 424 RFFFN---LPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLDGSPTNWMSS 480
Query: 243 C 243
C
Sbjct: 481 C 481
|
Length = 1655 |
| >gnl|CDD|238959 cd02001, TPP_ComE_PpyrDC, Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-08
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 37/178 (20%)
Query: 439 AIQILNELTDDEETIISTGVGQHQMWAIQ-----FYMYKRARQLLTSSGFGSMGFGLPAA 493
AI + E + D + +TG +++ +Q FYM GSMG
Sbjct: 4 AIAEIIEASGDTPIVSTTGYASRELYDVQDRDGHFYM------------LGSMGLAGSIG 51
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAEN-IPVKILLINNQYLGMNVEYEDRYF 552
+G A+ ++V +DGDGS +MN L + + +++++N+ G
Sbjct: 52 LGLALGLSRKVIV-VDGDGSLLMNPGVLLTAGEFTPLNLILVVLDNRAYG---------- 100
Query: 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLL 610
S G P S + ++ +A ACG + + +L T GP LL
Sbjct: 101 ------STGGQPTPSSNV--NLEAWAAACGYLVLSAPLLGGLGSEFAGLLATTGPTLL 150
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. Length = 157 |
| >gnl|CDD|235721 PRK06163, PRK06163, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 4e-08
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 441 QILNELTDDEETIISTGVGQHQMWAI-----QFYMYKRARQLLTSSGFGSMGFGLPAAMG 495
+++ +L D+E I G +WA FYM GSMG P A+G
Sbjct: 21 RLVAKLKDEEAVIGGIGNTNFDLWAAGQRPQNFYM------------LGSMGLAFPIALG 68
Query: 496 AAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536
A+A P V+ ++GDGS +M L L I A P + +I
Sbjct: 69 VALAQPKRRVIALEGDGSLLMQLGALGTIAALA-PKNLTII 108
|
Length = 202 |
| >gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIH--QSLTR-SNIRSILPRHEQGGIFAAEGYAR 128
GA+ +V L GV FA PG + E+H +L R +R +L E AA+GYAR
Sbjct: 3 GAESLVRTLVDGGVDVCFANPGTS--EMHFVAALDRVPGMRCVLGLFEGVATGAADGYAR 60
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQ 167
+G P L+ GPG+ N + L +A PI+ I G
Sbjct: 61 MAGKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGD 99
|
Length = 514 |
| >gnl|CDD|215311 PLN02573, PLN02573, pyruvate decarboxylase | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 70/295 (23%), Positives = 128/295 (43%), Gaps = 50/295 (16%)
Query: 84 GVTTVFAYPGGASIEI-HQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142
GVT VF+ PG ++ + + + I +E +AA+GYAR+ G G C+V+
Sbjct: 30 GVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGV-GACVVTFTV 88
Query: 143 GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD-----------------AFQEIPVVE 185
G +++ + AYS+++P++ I G + GT+ FQ +
Sbjct: 89 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV---- 144
Query: 186 VTRYMTKHNYLVLDVDDIPRIIKEAFFIATS-GRPGPVLIDIPVDVQLELAVPNWNQPCK 244
T + ++ +++D +I A I+T+ PV I + ++ + P +++
Sbjct: 145 -----TCYQAVINNLEDAHELIDTA--ISTALKESKPVYISVSCNLA-AIPHPTFSRE-P 195
Query: 245 LPSCISSLPKEPDELALRQTLKLIVESKN----PVLCVGGGCLNSSEELRKFVGL---TG 297
+P ++ P+ ++++L ++ E N PVL VGG L ++ + FV L +G
Sbjct: 196 VPFFLT--PRLSNKMSLEAAVEAAAEFLNKAVKPVL-VGGPKLRVAKACKAFVELADASG 252
Query: 298 IPVTCTTMGLGLFPCTDELCLRMVGMF----GTVYANYAVNECDLLLAAGVRFNE 348
PV GL P +G + T + V D L AG FN+
Sbjct: 253 YPVAVMPSAKGLVPEHHP---HFIGTYWGAVSTPFCAEIVESADAYLFAGPIFND 304
|
Length = 578 |
| >gnl|CDD|239470 cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 440 IQILNELT-DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSM-GFGLPAAMGAA 497
+ L EL D E+ ++ +G+G R + GF ++ G L A G
Sbjct: 15 AKALAELGIDPEKVVVVSGIGCS----------SRLPYYFNTYGFHTLHGRALAVATGVK 64
Query: 498 VANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGM 543
+ANP V+ + GDG + NI + +++ NNQ G+
Sbjct: 65 LANPDLTVIVVSGDGDLAAIGGNHFIHAARRNIDITVIVHNNQIYGL 111
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. Length = 193 |
| >gnl|CDD|238966 cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 13/130 (10%)
Query: 482 GFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINNQY 540
MG + A+G A A+ VV + GD +F + + L + +++++N+
Sbjct: 49 TCTCMGASIGVAIGMAKASEDKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRT 108
Query: 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK---KKDVRAA 597
M + + G L + D+ A G+ V K +R
Sbjct: 109 TAMT---------GGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREE 159
Query: 598 IQLMLETPGP 607
++ L PG
Sbjct: 160 LKEALAVPGV 169
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. Length = 178 |
| >gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 44/167 (26%), Positives = 61/167 (36%), Gaps = 50/167 (29%)
Query: 470 MYKRARQLLTSSGFGSMGFGLPAAMGAAVA----NPGAIVVDIDGDG---------SFIM 516
M+ R + G G +G +P A G A A + GDG SF M
Sbjct: 98 MFDREKNFY--GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNM 155
Query: 517 NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLK 576
AA+ +PV ++ NN Y M G + +S D+ K
Sbjct: 156 -----AAL--WKLPVIFVIENNLY-AM------------------GTAVERSSSVTDLYK 189
Query: 577 FAEACGIPAARVTKKKDVRA-------AIQLMLETPGPYLLDVMVSY 616
E+ GIP RV DV A A++ GP LL+ M +Y
Sbjct: 190 RGESFGIPGERV-DGMDVLAVREAAKEAVERARSGKGPILLE-MKTY 234
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315 |
| >gnl|CDD|224087 COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-04
Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 28/194 (14%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLT-----RSNIRSILPRHEQGGIFAAE 124
A + +E L R GV V PG S L I + E+ F A
Sbjct: 8 TLWARVFLEELARLGVRDVVICPGSRS----TPLALAAAAHDAITVHVHIDERSAGFFAL 63
Query: 125 GYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVV 184
G A++S P + +SG V N+ +++A +P++ +T +L G A Q I
Sbjct: 64 GLAKASKRPVAVICTSGTAVANLYPAVIEANLSRVPLIVLTADRPPELRGCGANQAI--- 120
Query: 185 EVTRYMTKH-NY---LVLDVDDIP------RIIKEAFFIATSGRPGPVLIDIPVDVQL-- 232
+ T + L L DDI I A A + GPV I++P L
Sbjct: 121 DQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPHAGPVHINVPFREPLVP 180
Query: 233 ----ELAVPNWNQP 242
E A W +P
Sbjct: 181 DLEPEGAGTPWGRP 194
|
Length = 566 |
| >gnl|CDD|238967 cd02009, TPP_SHCHC_synthase, Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 25/129 (19%)
Query: 493 AMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG------MNVE 546
A+G A+A V + GD SF+ +L L K E + + I++INN G +
Sbjct: 60 ALGIALATDK-PTVLLTGDLSFLHDLNGLLLGKQEPLNLTIVVINNN--GGGIFSLLPQA 116
Query: 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC---GIPAARVTKKKDVRAAIQLMLE 603
+ FE G P L F G+ RV+ ++ A++ L
Sbjct: 117 SFEDEFE-----RLFGTPQG--------LDFEHLAKAYGLEYRRVSSLDELEQALESALA 163
Query: 604 TPGPYLLDV 612
GP++++V
Sbjct: 164 QDGPHVIEV 172
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. Length = 175 |
| >gnl|CDD|215311 PLN02573, PLN02573, pyruvate decarboxylase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
+GS+G+ + A +G A A P V+ GDGSF + Q+++ + I LINN
Sbjct: 427 YGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIFLINNGGYT 486
Query: 543 MNVEYED 549
+ VE D
Sbjct: 487 IEVEIHD 493
|
Length = 578 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 643 | |||
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 100.0 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 100.0 | |
| PLN02470 | 585 | acetolactate synthase | 100.0 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 100.0 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 100.0 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 100.0 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 100.0 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 100.0 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 100.0 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 100.0 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 100.0 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 100.0 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 100.0 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 100.0 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 100.0 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 100.0 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 100.0 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 100.0 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 100.0 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 100.0 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 100.0 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 100.0 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 100.0 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 100.0 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 100.0 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 100.0 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 100.0 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 100.0 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 100.0 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 100.0 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 100.0 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 100.0 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| PLN02573 | 578 | pyruvate decarboxylase | 100.0 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 100.0 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 100.0 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 100.0 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 100.0 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 100.0 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 100.0 | |
| PRK07586 | 514 | hypothetical protein; Validated | 100.0 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 100.0 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 100.0 | |
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 100.0 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 100.0 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 100.0 | |
| KOG1184 | 561 | consensus Thiamine pyrophosphate-requiring enzyme | 100.0 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 100.0 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 100.0 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 100.0 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 100.0 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 100.0 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 100.0 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 100.0 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 100.0 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 100.0 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 100.0 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 100.0 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 100.0 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 100.0 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 100.0 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 100.0 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 100.0 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 100.0 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 100.0 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 100.0 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 100.0 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 99.98 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 99.97 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 99.97 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 99.97 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 99.97 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.97 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 99.96 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 99.96 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 99.96 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 99.96 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 99.96 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 99.96 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 99.95 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 99.95 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.94 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.94 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.94 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.94 | |
| PF00205 | 137 | TPP_enzyme_M: Thiamine pyrophosphate enzyme, centr | 99.93 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 99.93 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 99.85 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 99.77 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 99.75 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 99.71 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 99.7 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 99.7 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 99.69 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 99.68 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 99.65 | |
| PRK05899 | 624 | transketolase; Reviewed | 99.59 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 99.51 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 99.51 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 99.44 | |
| PRK00945 | 171 | acetyl-CoA decarbonylase/synthase complex subunit | 99.41 | |
| TIGR00315 | 162 | cdhB CO dehydrogenase/acetyl-CoA synthase complex, | 99.4 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 99.39 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.32 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 99.19 | |
| PRK07119 | 352 | 2-ketoisovalerate ferredoxin reductase; Validated | 99.01 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 98.98 | |
| TIGR03710 | 562 | OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s | 98.94 | |
| PRK08659 | 376 | 2-oxoglutarate ferredoxin oxidoreductase subunit a | 98.92 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subuni | 98.87 | |
| PLN02790 | 654 | transketolase | 98.85 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 98.81 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), | 98.8 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 98.78 | |
| PTZ00089 | 661 | transketolase; Provisional | 98.72 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 98.7 | |
| PRK08366 | 390 | vorA 2-ketoisovalerate ferredoxin oxidoreductase s | 98.69 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 98.68 | |
| PRK09622 | 407 | porA pyruvate flavodoxin oxidoreductase subunit al | 98.67 | |
| PRK12754 | 663 | transketolase; Reviewed | 98.67 | |
| PF01855 | 230 | POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta | 98.67 | |
| PRK12753 | 663 | transketolase; Reviewed | 98.65 | |
| PRK08367 | 394 | porA pyruvate ferredoxin oxidoreductase subunit al | 98.64 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 98.63 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 98.63 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 98.56 | |
| COG4032 | 172 | Predicted thiamine-pyrophosphate-binding protein [ | 98.5 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 98.46 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 98.35 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 98.29 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 98.28 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 98.27 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 98.23 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 98.21 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 98.17 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 98.1 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 98.04 | |
| COG0674 | 365 | PorA Pyruvate:ferredoxin oxidoreductase and relate | 98.03 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 98.02 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 98.02 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 98.0 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 97.95 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 97.93 | |
| KOG0225 | 394 | consensus Pyruvate dehydrogenase E1, alpha subunit | 97.93 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 97.86 | |
| COG1880 | 170 | CdhB CO dehydrogenase/acetyl-CoA synthase epsilon | 97.83 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 97.82 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 97.78 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 97.68 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 97.67 | |
| KOG1182 | 432 | consensus Branched chain alpha-keto acid dehydroge | 97.32 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 96.45 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 96.45 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 96.41 | |
| COG1029 | 429 | FwdB Formylmethanofuran dehydrogenase subunit B [E | 96.4 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 96.4 | |
| PF02552 | 167 | CO_dh: CO dehydrogenase beta subunit/acetyl-CoA sy | 96.27 | |
| PTZ00182 | 355 | 3-methyl-2-oxobutanate dehydrogenase; Provisional | 95.72 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 95.36 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 95.24 | |
| PF02779 | 178 | Transket_pyr: Transketolase, pyrimidine binding do | 95.23 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 95.2 | |
| smart00861 | 168 | Transket_pyr Transketolase, pyrimidine binding dom | 95.19 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 95.03 | |
| PRK09212 | 327 | pyruvate dehydrogenase subunit beta; Validated | 94.99 | |
| PRK11916 | 312 | electron transfer flavoprotein subunit YdiR; Provi | 94.7 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 94.66 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 94.63 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 94.6 | |
| PLN00022 | 356 | electron transfer flavoprotein subunit alpha; Prov | 94.52 | |
| cd02761 | 415 | MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the | 94.48 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 94.43 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 94.33 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 94.24 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 94.18 | |
| PRK03363 | 313 | fixB putative electron transfer flavoprotein FixB; | 94.16 | |
| PRK00481 | 242 | NAD-dependent deacetylase; Provisional | 94.07 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 93.98 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 93.82 | |
| PRK12753 | 663 | transketolase; Reviewed | 93.82 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 93.79 | |
| PRK14138 | 244 | NAD-dependent deacetylase; Provisional | 93.79 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 93.78 | |
| PTZ00089 | 661 | transketolase; Provisional | 93.71 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 93.69 | |
| cd01408 | 235 | SIRT1 SIRT1: Eukaryotic group (class1) which inclu | 93.63 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 93.54 | |
| PLN02790 | 654 | transketolase | 93.5 | |
| COG2025 | 313 | FixB Electron transfer flavoprotein, alpha subunit | 93.32 | |
| cd07036 | 167 | TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding | 93.27 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 93.25 | |
| PRK12754 | 663 | transketolase; Reviewed | 93.16 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 93.14 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 93.1 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 92.91 | |
| TIGR00300 | 407 | conserved hypothetical protein TIGR00300. All memb | 92.74 | |
| cd07036 | 167 | TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding | 92.68 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 92.5 | |
| TIGR03129 | 421 | one_C_dehyd_B formylmethanofuran dehydrogenase sub | 92.37 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 92.36 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 92.36 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 92.34 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 92.28 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 92.26 | |
| PTZ00408 | 242 | NAD-dependent deacetylase; Provisional | 92.17 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 92.0 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 91.97 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 91.97 | |
| CHL00144 | 327 | odpB pyruvate dehydrogenase E1 component beta subu | 91.91 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 91.87 | |
| cd01412 | 224 | SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea | 91.87 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 91.83 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 91.77 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 91.75 | |
| PRK05333 | 285 | NAD-dependent deacetylase; Provisional | 91.71 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 91.63 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 91.56 | |
| PF09364 | 379 | XFP_N: XFP N-terminal domain; InterPro: IPR018970 | 91.5 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 91.5 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 91.49 | |
| PRK07586 | 514 | hypothetical protein; Validated | 91.38 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 91.3 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 91.26 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 91.24 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 91.14 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 91.04 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 91.04 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 91.04 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 90.87 | |
| TIGR01591 | 671 | Fdh-alpha formate dehydrogenase, alpha subunit, ar | 90.77 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 90.75 | |
| cd02768 | 386 | MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The Nuo | 90.74 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 90.73 | |
| PTZ00409 | 271 | Sir2 (Silent Information Regulator) protein; Provi | 90.72 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 90.71 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 90.67 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 90.67 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 90.65 | |
| PLN02470 | 585 | acetolactate synthase | 90.62 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 90.62 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 90.57 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 90.56 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 90.55 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 90.53 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 90.48 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 90.37 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 90.33 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 90.28 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 90.28 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 90.27 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 90.26 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 90.22 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 90.14 | |
| PRK05899 | 624 | transketolase; Reviewed | 90.12 | |
| COG3957 | 793 | Phosphoketolase [Carbohydrate transport and metabo | 90.08 | |
| cd02753 | 512 | MopB_Formate-Dh-H Formate dehydrogenase H (Formate | 90.06 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 89.99 | |
| KOG3954 | 336 | consensus Electron transfer flavoprotein, alpha su | 89.95 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 89.85 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 89.8 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 89.76 | |
| cd02767 | 574 | MopB_ydeP The MopB_ydeP CD includes a group of rel | 89.73 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 89.65 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 89.62 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 89.59 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 89.57 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 89.51 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 89.47 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 89.32 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 89.31 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 89.27 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 89.26 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 89.09 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 88.98 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 88.9 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 88.89 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 88.89 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 88.88 | |
| PRK09444 | 462 | pntB pyridine nucleotide transhydrogenase; Provisi | 88.81 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 88.67 | |
| cd01409 | 260 | SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla | 88.55 | |
| PF02779 | 178 | Transket_pyr: Transketolase, pyrimidine binding do | 88.53 | |
| TIGR03479 | 912 | DMSO_red_II_alp DMSO reductase family type II enzy | 88.41 | |
| cd02752 | 649 | MopB_Formate-Dh-Na-like Formate dehydrogenase N, a | 88.4 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 88.29 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 87.91 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 87.91 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 87.88 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 87.66 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 87.47 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 86.91 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 86.77 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 86.66 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 86.45 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 86.1 | |
| TIGR01973 | 603 | NuoG NADH-quinone oxidoreductase, chain G. This mo | 86.03 | |
| cd02750 | 461 | MopB_Nitrate-R-NarG-like Respiratory nitrate reduc | 85.96 | |
| TIGR01701 | 743 | Fdhalpha-like oxidoreductase alpha (molybdopterin) | 85.28 | |
| PLN02683 | 356 | pyruvate dehydrogenase E1 component subunit beta | 85.2 | |
| PLN02573 | 578 | pyruvate decarboxylase | 85.13 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 85.0 | |
| cd02766 | 501 | MopB_3 The MopB_3 CD includes a group of related u | 84.89 | |
| cd02754 | 565 | MopB_Nitrate-R-NapA-like Nitrate reductases, NapA | 84.72 | |
| PF02233 | 463 | PNTB: NAD(P) transhydrogenase beta subunit; InterP | 83.86 | |
| PRK09129 | 776 | NADH dehydrogenase subunit G; Validated | 83.86 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 83.74 | |
| PRK09212 | 327 | pyruvate dehydrogenase subunit beta; Validated | 83.71 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 83.31 | |
| cd02774 | 366 | MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: M | 82.63 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 82.3 | |
| cd02762 | 539 | MopB_1 The MopB_1 CD includes a group of related u | 82.23 | |
| cd02772 | 414 | MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second doma | 81.62 | |
| PRK09939 | 759 | putative oxidoreductase; Provisional | 81.3 | |
| PTZ00182 | 355 | 3-methyl-2-oxobutanate dehydrogenase; Provisional | 81.17 | |
| cd01410 | 206 | SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla | 81.0 | |
| COG3958 | 312 | Transketolase, C-terminal subunit [Carbohydrate tr | 80.91 | |
| PLN02683 | 356 | pyruvate dehydrogenase E1 component subunit beta | 80.62 | |
| cd02773 | 375 | MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The s | 80.45 | |
| KOG0451 | 913 | consensus Predicted 2-oxoglutarate dehydrogenase, | 80.09 |
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-127 Score=958.21 Aligned_cols=577 Identities=55% Similarity=0.895 Sum_probs=545.4
Q ss_pred CCCcccccccCCCC---CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHh
Q 040733 55 FQQTDFSSRFAPDK---PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS 130 (643)
Q Consensus 55 ~~~~~~~~~~~~~~---~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~s 130 (643)
.-|++|.+++++++ .++|+|++++.|+++||++||||||+.++|++||+.++. +++|+.||||+|+|||.||||+|
T Consensus 73 sk~~t~~s~~~~D~sfvg~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~s 152 (675)
T KOG4166|consen 73 SKPETFISRFAPDQSFVGRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSS 152 (675)
T ss_pred CCcccccccCCCcccccCCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhc
Confidence 33789999999998 899999999999999999999999999999999999988 99999999999999999999999
Q ss_pred CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHH
Q 040733 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEA 210 (643)
Q Consensus 131 g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A 210 (643)
||||||++|||||++|.++++++|++|++||+++|||+|++.+|+++|||.|.+.+.|++|||++.|.+++++|+.|++|
T Consensus 153 gKPGvvlvTSGPGATNvvtp~ADAlaDg~PlVvftGQVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~EA 232 (675)
T KOG4166|consen 153 GKPGVVLVTSGPGATNVVTPLADALADGVPLVVFTGQVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIEEA 232 (675)
T ss_pred CCCcEEEEecCCCcccccchhhHHhhcCCcEEEEecccchhhcccchhccCCeeeeeeccceeheeeecHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCeEEEEcccchhhhccCCCCCCCCCCCC--CCCCCCCCCCH---HHHHHHHHHHHhCCCcEEEEcCCchhh
Q 040733 211 FFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPS--CISSLPKEPDE---LALRQTLKLIVESKNPVLCVGGGCLNS 285 (643)
Q Consensus 211 ~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~--~~~~~~~~~~~---~~i~~~~~~L~~AkrPvIl~G~g~~~~ 285 (643)
|.+|.|||||||.+++|.|++.+-..+.|+...++|. +..+.+..+++ ..+++++++|+.||||||++|+||.+.
T Consensus 233 FeiATSGRPGPVLVDlPKDvta~~l~~pip~~~~lPsn~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~ 312 (675)
T KOG4166|consen 233 FEIATSGRPGPVLVDLPKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNS 312 (675)
T ss_pred hhhhccCCCCCeEeeCcHHHHHHHhcCCchhhhcCCchhhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccC
Confidence 9999999999999999999998887777777777886 44455555665 689999999999999999999999854
Q ss_pred H---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCce
Q 040733 286 S---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK 362 (643)
Q Consensus 286 ~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~ 362 (643)
. .+|.+|.|+++|||.+|++|.|.+++++++++.|+|++|+.++|++++++||||++|.||++++|++++.|.++++
T Consensus 313 ~d~p~lL~~fser~qIPVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar 392 (675)
T KOG4166|consen 313 SDGPRLLGRFSERTQIPVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLILAFGVRFDDRVTGNLSAFAPRAR 392 (675)
T ss_pred CcchHHHHHHHHhhcCcceehhhcccCcCCCCchhhhhhcccccceehhhhhccceeEEecceeccccccchhhhChhhh
Confidence 4 4899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ---------EEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccc--CCC
Q 040733 363 ---------IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK--TFG 431 (643)
Q Consensus 363 ---------iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~ 431 (643)
|||+|++|.+|||+..+++.++||+...|+.+...++.... +.+.+|+.+++.+|+++|..+. +++
T Consensus 393 ~aaae~rggIiHfdispknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~---~~r~dW~~qin~wK~~fP~sf~~~tpG 469 (675)
T KOG4166|consen 393 RAAAEGRGGIIHFDISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAE---ELRLDWRNQINVWKQKFPLSFKEETPG 469 (675)
T ss_pred hhhhcccCceEEEecCHHHhCcccCcceeeeccHHHHHHHHHhHhhcccc---hhhhhHHHHHHHHHHhCCeeeeccCCc
Confidence 99999999999999999999999999999999988877654 3456799999999999998654 567
Q ss_pred CCCCHHHHHHHHHhcCCC--CCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe
Q 040733 432 EEIPPQYAIQILNELTDD--EETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID 509 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~--~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~ 509 (643)
+.+.|+++++.|+++..+ ...||.+++|+|+||++++|+.++|++|++++|+|+||||||+||||++|+|+..||.|.
T Consensus 470 e~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~P~~iViDID 549 (675)
T KOG4166|consen 470 EAIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVANPDAIVIDID 549 (675)
T ss_pred cccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhcccccCcccEEEecc
Confidence 789999999999998754 267889999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC
Q 040733 510 GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589 (643)
Q Consensus 510 GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~ 589 (643)
||+||.|+++||+|+++.++||+|+++||+..||+-|||+.+|+.++.|+. ..+|||.++|++||+++.||+
T Consensus 550 GDaSF~Mt~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHTh--------Q~nPnf~klA~AmGikalRV~ 621 (675)
T KOG4166|consen 550 GDASFIMTVQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTH--------QENPNFLKLAAAMGIKALRVT 621 (675)
T ss_pred CCceeeeehHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhcccc--------ccCccHHHHHHhcCCchheee
Confidence 999999999999999999999999999999999999999999999998873 567999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCCCcccccccccCCCCCC
Q 040733 590 KKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGRAL 642 (643)
Q Consensus 590 ~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 642 (643)
+.+||++.++++++++||+|+||.|++++|++||+|.++++.+.|.++++|..
T Consensus 622 K~edL~~k~keflsTkGPvLleV~v~~kehVlPmvpgG~~l~~fI~~~~~~~k 674 (675)
T KOG4166|consen 622 KKEDLREKIKEFLSTKGPVLLEVIVPHKEHVLPMVPGGGTLNDFITEGDGRIK 674 (675)
T ss_pred hHHHHHHHHHHHhCCCCCeEEEEEccCccceeeecCCCccHhhhhccCCcccc
Confidence 99999999999999999999999999999999999999999999999999975
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-116 Score=972.87 Aligned_cols=543 Identities=46% Similarity=0.739 Sum_probs=489.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
.|+++|+|++.|+++||++|||+||+.+++|+|+|.+++|++|.+|||++|+|||+||||+|||||||++|+|||++|++
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~ 80 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLL 80 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHH
Confidence 47899999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++|+.|++|||+||||+++..+|+++|||+|+..|++++|||+++|.+++++++++++||+.|.++|||||||+||.
T Consensus 81 tgla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~ 160 (550)
T COG0028 81 TGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPK 160 (550)
T ss_pred HHHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCC
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|++.+++..........+.+.+. ....+++++++++|++||||+|++|+|+. ++.+++++|+|++++||++|++|
T Consensus 161 Dv~~~~~~~~~~~~~~~~~~~p~---~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~g 237 (550)
T COG0028 161 DVLAAEAEEPGPEPAILPPYRPA---PPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMG 237 (550)
T ss_pred hHhhcccccccccccccccCCCC---CCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccCc
Confidence 99998864432111112222211 11128999999999999999999999998 46699999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||++|++||+++|++|++|+..++.++++||+||+||++|+++.+. +..|.++.++||||+|+.++++++++++.|++|
T Consensus 238 kg~~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD 316 (550)
T COG0028 238 KGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGD 316 (550)
T ss_pred CccCCCCCccccccccccccHHHHHHhhcCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhCCCCCCCeeEecc
Confidence 9999999999999999999988999999999999999999999998 666665544999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC-cc-cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHH
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF-SY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMW 464 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~ 464 (643)
++.+|++|++.++.. ...|.+++.+.+.++.. .. .......+|+++++.|++.+++ |+||++|+|++++|
T Consensus 317 ~~~~l~~L~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~l~~~~~~-daiv~~d~G~~~~w 388 (550)
T COG0028 317 AKATLEALLEELKPE-------RAAWLEELLEARAAYRDLALEELADDGIKPQYVIKVLRELLPD-DAIVVTDVGQHQMW 388 (550)
T ss_pred HHHHHHHHHHhhhhc-------chHHHHHHHHHHHhhhhhhhhccCCCccCHHHHHHHHHHhCCC-CeEEEeCCcHHHHH
Confidence 999999999887642 24687777665543321 11 1122334899999999999999 99999999999999
Q ss_pred HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 465 AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 465 ~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
..++++..+|++|+.++++|+||||+|+|||||++.|+|+||+|+|||||+|++|||+|++||++|+++||+||++|||+
T Consensus 389 ~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v 468 (550)
T COG0028 389 AARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNGGYGMV 468 (550)
T ss_pred HHHhcccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEEEEECCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccccc
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMI 624 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~ 624 (643)
+++|..+|..+..++.+++ .+ |.++||+||+++++|++++||+++|+++++.++|+||||.||++++..|++
T Consensus 469 ~~~q~~~~~~~~~~~~~~~-------~~-f~klAea~G~~g~~v~~~~el~~al~~al~~~~p~lidv~id~~~~~~p~~ 540 (550)
T COG0028 469 RQWQELFYGGRYSGTDLGN-------PD-FVKLAEAYGAKGIRVETPEELEEALEEALASDGPVLIDVVVDPEEAVPPMV 540 (550)
T ss_pred hHHHHHhcCCCcceeecCC-------cc-HHHHHHHcCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCcccCCCCC
Confidence 9999999887656665522 23 999999999999999999999999999999999999999999987788888
Q ss_pred CCCcccc
Q 040733 625 PYDKSFK 631 (643)
Q Consensus 625 ~~~~~~~ 631 (643)
+.+....
T Consensus 541 ~~~~~~~ 547 (550)
T COG0028 541 PLGKANG 547 (550)
T ss_pred Cccchhh
Confidence 8776443
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-110 Score=945.44 Aligned_cols=583 Identities=69% Similarity=1.130 Sum_probs=517.4
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEE
Q 040733 58 TDFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVC 136 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~ 136 (643)
++|-|+|+|+.+++++|+|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+|||+|||
T Consensus 1 ~~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~ 80 (585)
T PLN02470 1 ETFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVC 80 (585)
T ss_pred CCcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEE
Confidence 4799999999999999999999999999999999999999999999766 499999999999999999999999999999
Q ss_pred EEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhc
Q 040733 137 LVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 137 ~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s 216 (643)
++|+|||++|+++||++||.+++|||+|+|+.++...+++.+|++|+..+++++|||+++|.+++++++++++|++.|.+
T Consensus 81 ~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s 160 (585)
T PLN02470 81 IATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASS 160 (585)
T ss_pred EECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHh
Q 040733 217 GRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLT 296 (643)
Q Consensus 217 ~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~l 296 (643)
+|+|||||+||.|++.+++.+.+..+..++.+....+..++++.+++++++|++||||+|++|+|+.++.+++++|+|++
T Consensus 161 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~~a~~~l~~lae~~ 240 (585)
T PLN02470 161 GRPGPVLVDIPKDIQQQLAVPNWNQPMKLPGYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCLNSSEELREFVELT 240 (585)
T ss_pred CCCCeEEEEecCchhhhhccccccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCChhhhHHHHHHHHHHh
Confidence 99999999999999987753322111111111111112357788999999999999999999999988889999999999
Q ss_pred CCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCC
Q 040733 297 GIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV 376 (643)
Q Consensus 297 g~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~ 376 (643)
++||++|++|||+||++||+++|++|..+...+++++++||+||+||++++++.++.+..|.++.++||||+|+.+++++
T Consensus 241 ~~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~ 320 (585)
T PLN02470 241 GIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIGKN 320 (585)
T ss_pred CCCEEEccCccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhCCC
Confidence 99999999999999999999999999999988999999999999999999988887665566778999999999999999
Q ss_pred CCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 377 KLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 377 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
++.++.|++|++.+|++|++.++..... ......|.+.+.+.++++....+....++++..+++.|++.+++ |.||+.
T Consensus 321 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-d~iv~~ 398 (585)
T PLN02470 321 KQPHVSVCADVKLALQGLNKLLEERKAK-RPDFSAWRAELDEQKEKFPLSYPTFGDAIPPQYAIQVLDELTDG-NAIIST 398 (585)
T ss_pred cCCCeEEecCHHHHHHHHHHhhhhcccc-ccchHHHHHHHHHHHHhChhcccCCCCCcCHHHHHHHHHhhCCC-CEEEEE
Confidence 9999999999999999999887643211 11235788777666554432211223579999999999999998 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++..|..++++..+|++|++++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|++|||+
T Consensus 399 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~v~ivV~ 478 (585)
T PLN02470 399 GVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIMVL 478 (585)
T ss_pred CCcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
||++||++++.|+..|+.+..+..++.|.......+||.++|++||+++.+|++++||+++|+++++.++|+||||++++
T Consensus 479 NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~i~~ 558 (585)
T PLN02470 479 NNQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLDTPGPYLLDVIVPH 558 (585)
T ss_pred eCCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 99999999999988777655444444432222234899999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCcccccccccCCCCCC
Q 040733 617 QEHVVPMIPYDKSFKDTILEDDGRAL 642 (643)
Q Consensus 617 ~~~~~p~~~~~~~~~~~~~~~~~~~~ 642 (643)
.+...|+.+.+..+..+...||||++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (585)
T PLN02470 559 QEHVLPMIPGGGTFKDIITEGDGRTK 584 (585)
T ss_pred ccCcCCccCCCCchhhceeccccccC
Confidence 88888888888888889999999996
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-106 Score=908.29 Aligned_cols=552 Identities=38% Similarity=0.678 Sum_probs=485.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+++++|+|++.|+++||+||||+||+++++|+++|.+. +|++|.+|||++|+|||+||||+|||||||++|+|||++|+
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 82 (572)
T PRK08979 3 MLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNT 82 (572)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHH
Confidence 36899999999999999999999999999999999765 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++||.+++|||+|+|+.++...+++.+|++|+.++++++|||+++|.+++++++.|++|++.|.++++|||||+||
T Consensus 83 l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 83 ITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 228 VDVQLELAVPNW--NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 228 ~Dv~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
.|++.++++... ......+.+.+. ..+++..+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt 240 (572)
T PRK08979 163 KDCLNPAILHPYEYPESIKMRSYNPT--TSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVST 240 (572)
T ss_pred HhHhhhhhcccccCCcccccccCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEc
Confidence 999987763211 111011111111 124678899999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||+||++||+++|++|..++..+++++++||+||+||++++++.++.+..+.++.++||||.|+.+++++++.++.|
T Consensus 241 ~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i 320 (572)
T PRK08979 241 LMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPI 320 (572)
T ss_pred ccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCceEE
Confidence 99999999999999999999999999999999999999999999888876666667789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|++.+..+... .......|.+++...+...........+++++.++++.|++.+++ |.+|+.|+|++.
T Consensus 321 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-d~ivv~d~G~~~ 399 (572)
T PRK08979 321 VGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLAYDKSSERIKPQQVIETLYKLTNG-DAYVASDVGQHQ 399 (572)
T ss_pred ecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhcCC-CeEEEECCcHHH
Confidence 999999999999877643211 011224688777665544322211223469999999999999998 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|+.++++.+++++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|+++||+||++|+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~ 479 (572)
T PRK08979 400 MFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKIINLNNRFLG 479 (572)
T ss_pred HHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHHcCCCeEEEEEeCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC-CCcEEEEEEeCCCCCcc
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET-PGPYLLDVMVSYQEHVV 621 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~-~gp~lIeV~v~~~~~~~ 621 (643)
+++++|+..|+.+.....+ ...+||.++|++||+++++|++.+||+++|+++++. ++|+||||++++++...
T Consensus 480 ~i~~~q~~~~~~~~~~~~~-------~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~~~ 552 (572)
T PRK08979 480 MVKQWQDMIYQGRHSHSYM-------DSVPDFAKIAEAYGHVGIRISDPDELESGLEKALAMKDRLVFVDINVDETEHVY 552 (572)
T ss_pred HHHHHHHHHhCCcccccCC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccccC
Confidence 9999987666543322211 235899999999999999999999999999999985 99999999999888777
Q ss_pred cccCCCccc
Q 040733 622 PMIPYDKSF 630 (643)
Q Consensus 622 p~~~~~~~~ 630 (643)
|+.+.+..+
T Consensus 553 ~~~~~~~~~ 561 (572)
T PRK08979 553 PMQIRGGAM 561 (572)
T ss_pred CccCCCCcH
Confidence 776655333
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-105 Score=907.27 Aligned_cols=563 Identities=36% Similarity=0.665 Sum_probs=489.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+|||+||+|+|||||||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~ 82 (574)
T PRK07979 3 MLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhh
Confidence 46899999999999999999999999999999999774 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+|+|+.++...+++.+|++|+..+++++|||++++.+++++++.|++||+.|.++++|||||+||
T Consensus 83 l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 83 ITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred HHHHHHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 228 VDVQLELAVPNW--NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 228 ~Dv~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
.|++.+++...+ ......+.+.+. ..++++.+++++++|.+||||+|++|+|+. ++.++|++|+|++|+||++|
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt 240 (574)
T PRK07979 163 KDILNPANKLPYVWPESVSMRSYNPT--TQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSS 240 (574)
T ss_pred hhhhhhhhccccccCcccccccCCCC--CCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEc
Confidence 999876542111 111011111111 124678899999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||+||++||+++|++|..++..+++++++||+||+||++++++.++.+..|.+++++||||+|+.++++++..++.|
T Consensus 241 ~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i 320 (574)
T PRK07979 241 LMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPI 320 (574)
T ss_pred cccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhCCcccCCeEE
Confidence 99999999999999999999999999999999999999999999888876666667789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|++.+...... .......|.+++.+.+...........+++++..+++.|++.+++ |.||+.|+|++.
T Consensus 321 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-d~ivv~d~G~~~ 399 (574)
T PRK07979 321 VGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKG-DAYVTSDVGQHQ 399 (574)
T ss_pred ecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhcCC-CEEEEeCCcHHH
Confidence 999999999999887643211 011235787777665543322211223469999999999999998 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..+++++.+|++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|+++||+||++||
T Consensus 400 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v~ivV~NN~~yg 479 (574)
T PRK07979 400 MFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLG 479 (574)
T ss_pred HHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC---CCcEEEEEEeCCCCC
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET---PGPYLLDVMVSYQEH 619 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~---~gp~lIeV~v~~~~~ 619 (643)
+++++|...|+.+....++ ...+||.++|++||+++++|++.+||+++|+++++. ++|+||||+++++++
T Consensus 480 ~i~~~q~~~~~~~~~~~~~-------~~~~d~~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIeV~i~~~~~ 552 (574)
T PRK07979 480 MVKQWQDMIYSGRHSQSYM-------QSLPDFVRLAEAYGHVGIQISHPDELESKLSEALEQVRNNRLVFVDVTVDGSEH 552 (574)
T ss_pred HHHHHHHHhcCCccccccC-------CCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhccCCCCcEEEEEEECCccC
Confidence 9999987766543322211 235899999999999999999999999999999985 999999999999887
Q ss_pred cccccCCCcccccccccCCCCC
Q 040733 620 VVPMIPYDKSFKDTILEDDGRA 641 (643)
Q Consensus 620 ~~p~~~~~~~~~~~~~~~~~~~ 641 (643)
..|+.+.+..+..+....++|+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~ 574 (574)
T PRK07979 553 VYPMQIRGGGMDEMWLSKTERT 574 (574)
T ss_pred cCCCcCCCCchhhhhccccCCC
Confidence 7777776544433332333553
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-105 Score=906.53 Aligned_cols=559 Identities=40% Similarity=0.680 Sum_probs=488.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 040733 62 SRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSS 140 (643)
Q Consensus 62 ~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~ 140 (643)
|-..|...++++|+|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|++|||+||++|+
T Consensus 13 ~~~~~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~ 92 (587)
T PRK06965 13 SLSPPAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTS 92 (587)
T ss_pred ccCCCchhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 335667789999999999999999999999999999999999775 4999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCC
Q 040733 141 GPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPG 220 (643)
Q Consensus 141 GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~G 220 (643)
|||++|+++||++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++.+++++++.+++|++.|+++++|
T Consensus 93 GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 172 (587)
T PRK06965 93 GPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPG 172 (587)
T ss_pred CccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCC
Q 040733 221 PVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGI 298 (643)
Q Consensus 221 PV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~ 298 (643)
||||+||.|++.+++......+...+.+.+. ..++++.+++++++|.+||||+||+|+|++ ++.+++.+|+|++|+
T Consensus 173 PV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~ 250 (587)
T PRK06965 173 PVVVDIPKDVSKTPCEYEYPKSVEMRSYNPV--TKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLGY 250 (587)
T ss_pred eEEEEeChhhhhChhccccCccccccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHHHHhCC
Confidence 9999999999987763211111111111111 124778899999999999999999999997 678999999999999
Q ss_pred ceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccC-CceEEEEcCCcccccCCC
Q 040733 299 PVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT-RAKIVHIDIDSNEIGKVK 377 (643)
Q Consensus 299 PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~-~~~iI~Id~d~~~i~~~~ 377 (643)
||++|++|||+||++||+++|++|..++..+++++++||+||+||++++++.++++..|.+ +.++||||+|+.++++++
T Consensus 251 pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 330 (587)
T PRK06965 251 PVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSISKRV 330 (587)
T ss_pred CEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCceEEEEeCCHHHhCCcC
Confidence 9999999999999999999999999999999999999999999999999887765544544 478999999999999999
Q ss_pred CCCeeEecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 378 LPDVSICADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 378 ~~~~~i~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
+.++.+++|++.+|++|++.+...... .......|.+++.+.+.+..........++++..+++.|++.+++ |.|++.
T Consensus 331 ~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-d~ii~~ 409 (587)
T PRK06965 331 KVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCLKYDRESEIIKPQYVVEKLWELTDG-DAFVCS 409 (587)
T ss_pred CCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCCC-CeEEEe
Confidence 999999999999999999877542211 111235687776665543322111123569999999999999998 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++..|..++++.++|++|+.++++|+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++|+++||+
T Consensus 410 d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL~Ta~r~~lpviivV~ 489 (587)
T PRK06965 410 DVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDTPVKIISL 489 (587)
T ss_pred CCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-CCCcEEEEEEeC
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-TPGPYLLDVMVS 615 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-~~gp~lIeV~v~ 615 (643)
||++|+++++.|...|..+....++ ...+||.++|++||+++++|++.+||+++|+++++ .++|+||||.++
T Consensus 490 NN~~~~~i~~~q~~~~~~~~~~~~~-------~~~~d~~~iA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lieV~i~ 562 (587)
T PRK06965 490 NNRYLGMVRQWQEIEYSKRYSHSYM-------DALPDFVKLAEAYGHVGMRIEKTSDVEPALREALRLKDRTVFLDFQTD 562 (587)
T ss_pred ECCcchHHHHHHHHhcCCCccccCC-------CCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999999987766544332221 13589999999999999999999999999999997 489999999999
Q ss_pred CCCCcccccCCCccc
Q 040733 616 YQEHVVPMIPYDKSF 630 (643)
Q Consensus 616 ~~~~~~p~~~~~~~~ 630 (643)
+++...|+++.+..+
T Consensus 563 ~~~~~~p~~~~~~~~ 577 (587)
T PRK06965 563 PTENVWPMVQAGKGI 577 (587)
T ss_pred cccccCCccCCCCch
Confidence 988887877765433
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-105 Score=902.31 Aligned_cols=547 Identities=30% Similarity=0.489 Sum_probs=475.2
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N 146 (643)
.|+++|+|++.|+++||+||||+||+++++|+++|.+. +|++|.+|||++|+||||||||++ |++|||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 46899999999999999999999999999999999765 499999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++||.+++|||+|+|+.++...+++.+|++||.++++++|||++++.++++++++|++||+.|+++|+|||||+|
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~i 161 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDL 161 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.++++.........+ ...+.++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 162 P~Dv~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~ 237 (588)
T TIGR01504 162 PFDVQVAEIEFDPDTYEPLP----VYKPAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTL 237 (588)
T ss_pred CcchhhcccCCccccccccc----CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeEEcC
Confidence 99999876532111000111 111235788999999999999999999999997 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCC-CcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDELCLRMVGMF-GTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~-~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+|||+||++||+++|++|.. ++..+++++++||+||+||++++++.++.+..+.++.++||||.|+.++++++.+++.|
T Consensus 238 ~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i 317 (588)
T TIGR01504 238 MGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIGRVFAPDLGI 317 (588)
T ss_pred ccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhcCcCCCCeEE
Confidence 99999999999999999876 67888899999999999999999888876666667788999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|.+.+....... ......|.+++.+.+.+........+.+++|..+++.|++.+++ |.+|+.|+|++.
T Consensus 318 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~-d~ivv~D~G~~~ 396 (588)
T TIGR01504 318 VSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGR-DVCYVTTIGLSQ 396 (588)
T ss_pred EeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHhCCC-CCEEEECCcHHH
Confidence 9999999999988764321110 11235788777665443321111223469999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..++++..+|++|++++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++||+||++||
T Consensus 397 ~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~iV~NN~~yg 476 (588)
T TIGR01504 397 IAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYIHVLVNNAYLG 476 (588)
T ss_pred HHHHHhccccCCCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccC--CCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEEeCC
Q 040733 543 MNVEYEDRYFEANRANSFLG--DPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVMVSY 616 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g--~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~v~~ 616 (643)
++++.|...++.......+. .+.......+||.++|++||+++.+|++++||+++|+++++ .++|+||||++++
T Consensus 477 ~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 477 LIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred HHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 99998876543211111110 01111123589999999999999999999999999999995 7999999999998
Q ss_pred CCCc
Q 040733 617 QEHV 620 (643)
Q Consensus 617 ~~~~ 620 (643)
++..
T Consensus 557 ~~~~ 560 (588)
T TIGR01504 557 VTNI 560 (588)
T ss_pred ccCC
Confidence 8763
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-105 Score=900.82 Aligned_cols=552 Identities=44% Similarity=0.729 Sum_probs=483.0
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+.++++|+|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 9 ~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 9 RQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred hhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 457999999999999999999999999999999999765 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++||.+++|||+|+|+.++...+.+.+|++||..+++++|||++++.+++++++++++|++.|+++++|||||+|
T Consensus 89 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~i 168 (595)
T PRK09107 89 AVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDI 168 (595)
T ss_pred HHHHHHHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--h--hHHHHHHHHHHhCCcee
Q 040733 227 PVDVQLELAVPNWNQPCK-LPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--N--SSEELRKFVGLTGIPVT 301 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~--~~~~l~~lae~lg~PV~ 301 (643)
|.|++.+++......... ...+.+ .+.++.+.+++++++|.+||||+|++|+|+. + +.+++++|+|++|+||+
T Consensus 169 P~Dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~ 246 (595)
T PRK09107 169 PKDVQFATGTYTPPQKAPVHVSYQP--KVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPIT 246 (595)
T ss_pred CCChhhcccccccccccccccCCCC--CCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHHHHHHCCCEE
Confidence 999987654311111000 011111 1235778999999999999999999999986 3 67899999999999999
Q ss_pred ecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCe
Q 040733 302 CTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDV 381 (643)
Q Consensus 302 tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~ 381 (643)
+|++|||+||++||+++|++|..++..+++++++||+||+||++++++.++.+..|.++.++||||+|+.+++++++.++
T Consensus 247 tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~ 326 (595)
T PRK09107 247 STLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSINKNVRVDV 326 (595)
T ss_pred ECccccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCCCCCCe
Confidence 99999999999999999999998999999999999999999999998888776667777889999999999999999999
Q ss_pred eEecCHHHHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 382 SICADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 382 ~i~~D~~~~L~~L~~~l~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
.|++|++.+|++|++.+....... ......|.+++.+.+...........+++++..+++.|++++++.|.+++.|+|+
T Consensus 327 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~d~iv~~d~G~ 406 (595)
T PRK09107 327 PIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLAYTPSDDVIMPQYAIQRLYELTKGRDTYITTEVGQ 406 (595)
T ss_pred EEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHHhCCCCCeEEEECCcH
Confidence 999999999999998876432110 1123567766655544322111112356999999999999996338999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|+.+++++++|++|+.++++|+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++|+++||+||++
T Consensus 407 ~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvi~vV~NN~~ 486 (595)
T PRK09107 407 HQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLPVKIFILNNQY 486 (595)
T ss_pred HHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
|+++++.|...++.+....++ ...+||.++|++||+++++|++++||+++|+++++.++|+||||.+++.+..
T Consensus 487 y~~i~~~q~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~~~ 559 (595)
T PRK09107 487 MGMVRQWQQLLHGNRLSHSYT-------EAMPDFVKLAEAYGAVGIRCEKPGDLDDAIQEMIDVDKPVIFDCRVANLENC 559 (595)
T ss_pred cHHHHHHHHHHhCCccccccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcccc
Confidence 999999887766544332211 2358999999999999999999999999999999999999999999988776
Q ss_pred ccccCCCc
Q 040733 621 VPMIPYDK 628 (643)
Q Consensus 621 ~p~~~~~~ 628 (643)
.|+++.+.
T Consensus 560 ~~~~~~~~ 567 (595)
T PRK09107 560 FPMIPSGK 567 (595)
T ss_pred CCccCCCC
Confidence 67666553
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-104 Score=896.89 Aligned_cols=554 Identities=39% Similarity=0.672 Sum_probs=483.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++|+|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+||||||||+||||+||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~ 82 (574)
T PRK06466 3 LLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 46899999999999999999999999999999999765 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.+++||+.|+++|+|||||+||
T Consensus 83 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP 162 (574)
T PRK06466 83 ITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIP 162 (574)
T ss_pred HHHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 228 VDVQLELAVPN--WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 228 ~Dv~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
.|++.+..... .......+.+.+. ..++.+.+++++++|.+||||+|++|.|+. ++.+++.+|+|++|+||++|
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt 240 (574)
T PRK06466 163 KDMTNPAEKFEYEYPKKVKLRSYSPA--VRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNT 240 (574)
T ss_pred HhHhhhhhccccccCcccccccCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEc
Confidence 99975432111 0000000101111 124677899999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||+||++||+++|++|..+...++++++++|+||+||++++++.++++..+.+++++||||.|+.+++++++.++.+
T Consensus 241 ~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~~~~~~~~~i 320 (574)
T PRK06466 241 LMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASISKTIKADIPI 320 (574)
T ss_pred CccCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCCeEE
Confidence 99999999999999999998898899999999999999999999888876665667789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCC-ccc-CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 384 CADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPF-SYK-TFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
++|++.+|++|++.+...... .......|.+++.+.+.+... ... ....++++..+++.|++.+++ |.||+.|+|+
T Consensus 321 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~iv~~d~g~ 399 (574)
T PRK06466 321 VGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDKGDGGIIKPQQVVETLYEVTNG-DAYVTSDVGQ 399 (574)
T ss_pred ecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhcccCCCCCcCHHHHHHHHHhhCCC-CeEEEECCcH
Confidence 999999999999877542110 011234687777666544321 111 123469999999999999998 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|..++++.++|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++|||+|+++||+||++
T Consensus 400 ~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpv~ivV~NN~~ 479 (574)
T PRK06466 400 HQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVKIINLNNGA 479 (574)
T ss_pred HHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC-CCcEEEEEEeCCCCC
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET-PGPYLLDVMVSYQEH 619 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~-~gp~lIeV~v~~~~~ 619 (643)
|+++++.|+..|..+....++ ...+||.++|++||+++++|++.+||+++|+++++. ++|+||||++++++.
T Consensus 480 y~~i~~~q~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~p~lIev~i~~~~~ 552 (574)
T PRK06466 480 LGMVRQWQDMQYEGRHSHSYM-------ESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAFAMKDRLVFIDIYVDRSEH 552 (574)
T ss_pred cHHHHHHHHHhcCCceeecCC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccc
Confidence 999999987766544332211 235899999999999999999999999999999985 999999999999888
Q ss_pred cccccCCCccccc
Q 040733 620 VVPMIPYDKSFKD 632 (643)
Q Consensus 620 ~~p~~~~~~~~~~ 632 (643)
..|+.+.+..+..
T Consensus 553 ~~~~~~~~~~~~~ 565 (574)
T PRK06466 553 VYPMQIADGSMRD 565 (574)
T ss_pred cCCccCCCCchhh
Confidence 8887776543433
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-104 Score=900.44 Aligned_cols=552 Identities=42% Similarity=0.699 Sum_probs=485.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEE
Q 040733 63 RFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLV 138 (643)
Q Consensus 63 ~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~ 138 (643)
...++++++++|+|++.|+++||+||||+||+.+++|+++|.+. +|++|.+|||++|+|||+||||+|||||||++
T Consensus 12 ~~~~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~ 91 (616)
T PRK07418 12 TTVTPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFG 91 (616)
T ss_pred cccCCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEE
Confidence 34556788999999999999999999999999999999999742 39999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCC
Q 040733 139 SSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGR 218 (643)
Q Consensus 139 t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~ 218 (643)
|+|||++|+++||++|+.|++|||+|+||.++...+++.||++|+..+++++|||+++|.++++++++|++||+.|.+++
T Consensus 92 t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~ 171 (616)
T PRK07418 92 TSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGR 171 (616)
T ss_pred CCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcccchhhhccCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHH
Q 040733 219 PGPVLIDIPVDVQLELAVPNWNQP--CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVG 294 (643)
Q Consensus 219 ~GPV~i~iP~Dv~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae 294 (643)
+|||||+||.|++.+++......+ ...+.+. ..+.++++.+++++++|++||||+|++|+|+. ++.++|++|||
T Consensus 172 ~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~~l~~lae 249 (616)
T PRK07418 172 PGPVLIDIPKDVGQEEFDYVPVEPGSVKPPGYR--PTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAHAELKELAE 249 (616)
T ss_pred CCcEEEecchhhhhchhcccccCccccccCCCC--CCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHHHHHHHHHH
Confidence 999999999999987653110000 0011111 11236788999999999999999999999997 78899999999
Q ss_pred HhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCccccc
Q 040733 295 LTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 295 ~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~ 374 (643)
++|+||++|++|||+||++||+++|.+|..++..+++++++||+||+||++++++.++.+..|.++.++||||+|+.+++
T Consensus 250 ~l~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig 329 (616)
T PRK07418 250 RFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVG 329 (616)
T ss_pred HHCCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHHHhC
Confidence 99999999999999999999999999999999999999999999999999999888876666777789999999999999
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
+++..++.|++|++.+|++|++.++.... ......|.+++.++++.+........+++++..+++.|++.++ |.++
T Consensus 330 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~~~--d~i~ 405 (616)
T PRK07418 330 KNRRPDVPIVGDVRKVLVKLLERSLEPTT--PPRTQAWLERINRWKQDYPLVVPPYEGEIYPQEVLLAVRDLAP--DAYY 405 (616)
T ss_pred CccCCCeEEecCHHHHHHHHHHhhhcccc--ccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHhhCC--CcEE
Confidence 99999999999999999999988754221 1123578888877665543211122457999999999999987 5888
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
+.|+|++..|..++++ .+|++|++++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++|
T Consensus 406 ~~D~G~~~~~~~~~~~-~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpvi~v 484 (616)
T PRK07418 406 TTDVGQHQMWAAQFLR-NGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQYGINVKTV 484 (616)
T ss_pred EECChHHHHHHHHhhh-cCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEE
Confidence 8999999999999998 568899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEe
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMV 614 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v 614 (643)
|+||++||++++.|+..|+.++....+ ....+||.++|++||+++++|++++||+++|+++++.++|+||||++
T Consensus 485 V~NN~~~g~i~~~q~~~~~~~~~~~~~------~~~~~d~~~~A~a~G~~g~~V~~~~el~~al~~a~~~~~p~lIeV~i 558 (616)
T PRK07418 485 IINNGWQGMVRQWQESFYGERYSASNM------EPGMPDFVKLAEAFGVKGMVISERDQLKDAIAEALAHDGPVLIDVHV 558 (616)
T ss_pred EEECCcchHHHHHHHHhcCCCceeecC------CCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999999999887666544332211 11358999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCC
Q 040733 615 SYQEHVVPMIPYD 627 (643)
Q Consensus 615 ~~~~~~~p~~~~~ 627 (643)
+++++..|+.+.+
T Consensus 559 ~~~~~~~~~~~~~ 571 (616)
T PRK07418 559 RRDENCYPMVPPG 571 (616)
T ss_pred cCccccCCccCCC
Confidence 9888766766654
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-104 Score=893.90 Aligned_cols=544 Identities=40% Similarity=0.704 Sum_probs=481.6
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
..++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+|||++||++|+|||++|
T Consensus 8 ~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 8 SPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 567999999999999999999999999999999999765 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+|+|+.++...+++.+|++|+..+++++|||++++.+++++++++++|++.|+++|+|||||+|
T Consensus 88 ~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 167 (566)
T PRK07282 88 AITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDL 167 (566)
T ss_pred HHHHHHHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++..........+.+.+. ..+++..+++++++|.+||||+||+|+|+. ++.+++++|+|++|+||++|+
T Consensus 168 P~Dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~tt~ 245 (566)
T PRK07282 168 PKDVSALETDFIYDPEVNLPSYQPT--LEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVTTL 245 (566)
T ss_pred ChhhhhhhhcccccccccccCCCCC--CCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCCEEecc
Confidence 9999987763211110111111111 125678899999999999999999999997 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||+||++||+++|.+|..++..+++++++||+||+||++++++.++.+..|.++.++||||+|+.+++++++.++.++
T Consensus 246 ~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~ 325 (566)
T PRK07282 246 LGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPVV 325 (566)
T ss_pred ccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEe
Confidence 99999999999999999988888899999999999999999998887766567777899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHH
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMW 464 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~ 464 (643)
+|++.+|++|++.++.+ .....|.+++.+.+.+... .....+++++..+++.|++.+++ |.+|+.|+|++..|
T Consensus 326 ~D~~~~L~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~-~~ivv~d~G~~~~~ 398 (566)
T PRK07282 326 GDAKKALQMLLAEPTVH-----NNTEKWIEKVTKDKNRVRS-YDKKERVVQPQAVIERIGELTNG-DAIVVTDVGQHQMW 398 (566)
T ss_pred cCHHHHHHHHHHhhccc-----CChHHHHHHHHHHHHhchh-ccCcCCCcCHHHHHHHHHhhcCC-CeEEEECCcHHHHH
Confidence 99999999999876532 1235788777655444321 11223579999999999999998 99999999999999
Q ss_pred HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 465 AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 465 ~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
..++++.++|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++||+||++|+++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i 478 (566)
T PRK07282 399 AAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNHSLGMV 478 (566)
T ss_pred HHHhcccCCCCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccccc
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMI 624 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~ 624 (643)
++.|...|+.+.....+ ...+||+++|++||+++++|++.+||+++|+ ++..++|+||||.+++.++..|+.
T Consensus 479 ~~~q~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~~~~el~~al~-~~~~~~p~lIeV~v~~~~~~~~~~ 550 (566)
T PRK07282 479 RQWQESFYEGRTSESVF-------DTLPDFQLMAQAYGIKHYKFDNPETLAQDLE-VITEDVPMLIEVDISRKEHVLPMV 550 (566)
T ss_pred HHHHHHHhCCCcccccC-------CCCCCHHHHHHHCCCEEEEECCHHHHHHHHH-HhcCCCCEEEEEEeCCccccCCcc
Confidence 99987766544322211 2358999999999999999999999999997 467799999999999988777766
Q ss_pred CCCc
Q 040733 625 PYDK 628 (643)
Q Consensus 625 ~~~~ 628 (643)
+.+.
T Consensus 551 ~~~~ 554 (566)
T PRK07282 551 PAGK 554 (566)
T ss_pred CCCC
Confidence 6543
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-104 Score=891.02 Aligned_cols=536 Identities=44% Similarity=0.743 Sum_probs=482.1
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||+|+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~ 80 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLIT 80 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 68999999999999999999999999999999997767999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++|+.+++|||+|+|++++...+++.+|++||..+++++|||++++.+++++++++++||+.|.++++|||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 81 GLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred HHHHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCC
Q 040733 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGL 307 (643)
Q Consensus 230 v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gk 307 (643)
++.+++.. +.+ .+.. .....++++.+++++++|.+||||+|++|.|+. ++.+++++|||++|+||++|++||
T Consensus 161 v~~~~~~~--~~~--~~~~--~~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 234 (548)
T PRK08978 161 IQLAEGEL--EPH--LTTV--ENEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKGL 234 (548)
T ss_pred hhhccccc--ccc--cccc--CCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccccC
Confidence 98876531 111 1111 111235788899999999999999999999987 678999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCH
Q 040733 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADA 387 (643)
Q Consensus 308 g~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~ 387 (643)
|+||++||+++|.+|..+...+++++++||+||+||+++++..++++..|.++.++||||.|+.++++++..++.|++|+
T Consensus 235 g~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~ 314 (548)
T PRK08978 235 GAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDL 314 (548)
T ss_pred CCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhCCCCCCCeEEecCH
Confidence 99999999999999988888999999999999999999998887766667777899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHH
Q 040733 388 KLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQ 467 (643)
Q Consensus 388 ~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~ 467 (643)
+.+|++|.+.+. ...|.+++.+.+.+....+.....++++..+++.|++.+++ +.+++.|+|++..|..+
T Consensus 315 ~~~l~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~iiv~d~g~~~~~~~~ 384 (548)
T PRK08978 315 NALLPALQQPLN---------IDAWRQHCAQLRAEHAWRYDHPGEAIYAPALLKQLSDRKPA-DTVVTTDVGQHQMWVAQ 384 (548)
T ss_pred HHHHHHHHHhcc---------chHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhCCC-CcEEEecCcHHHHHHHH
Confidence 999999986542 13688877766554332222223579999999999999998 99999999999999999
Q ss_pred hccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHH
Q 040733 468 FYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547 (643)
Q Consensus 468 ~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~ 547 (643)
+++.+++++|++++++|+|||++|+|||++++.|+++||+|+|||||+|++|||+|++|+++|+++||+||++||+++++
T Consensus 385 ~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~ 464 (548)
T PRK08978 385 HMRFTRPENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMVRQW 464 (548)
T ss_pred hcccCCCCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCCC
Q 040733 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYD 627 (643)
Q Consensus 548 q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~~ 627 (643)
|...|+.+.....+ ...+||.++|++||+++++|++++||+++|+++++.++|.||||++++++...|.++.+
T Consensus 465 ~~~~~~~~~~~~~~-------~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~id~~~~~~~~~~~~ 537 (548)
T PRK08978 465 QQLFFDERYSETDL-------SDNPDFVMLASAFGIPGQTITRKDQVEAALDTLLNSEGPYLLHVSIDELENVWPLVPPG 537 (548)
T ss_pred HHHHhCCcceecCC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcccccccCCCC
Confidence 87766544332211 24589999999999999999999999999999999999999999999998887777765
Q ss_pred c
Q 040733 628 K 628 (643)
Q Consensus 628 ~ 628 (643)
.
T Consensus 538 ~ 538 (548)
T PRK08978 538 A 538 (548)
T ss_pred C
Confidence 4
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-104 Score=893.11 Aligned_cols=561 Identities=36% Similarity=0.616 Sum_probs=490.6
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh---CC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR---SN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~---~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
++++|+|++.|+++||++|||+||+.+++|+++|.+ ++ |++|.+|||++|+|||+||+|+||+|+||++|+|||++
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 479999999999999999999999999999999964 34 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
|+++||++|+.+++|||+|+||+++...+++.+|++||.++++++|||++++.+++++++.+++||+.|+++++|||||+
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~ 161 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVID 161 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceee
Q 040733 226 IPVDVQLELAVPN-WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 226 iP~Dv~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~t 302 (643)
||.|++.+++... .......+.+. ..+..++++.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++
T Consensus 162 iP~Dv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~t 240 (572)
T PRK06456 162 IPRDIFYEKMEEIKWPEKPLVKGYR-DFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIPIVS 240 (572)
T ss_pred cChhHhhcccccccccccccccCCC-CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHHHHHhCCCEEE
Confidence 9999998775321 11000001111 111235778899999999999999999999997 6789999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccC-CceEEEEcCCcccccCCCCCCe
Q 040733 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT-RAKIVHIDIDSNEIGKVKLPDV 381 (643)
Q Consensus 303 t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~-~~~iI~Id~d~~~i~~~~~~~~ 381 (643)
|++|||+||++||+++|++|..|+..+++++++||+||+||++++++.++.+..+.+ +.++||||+|+.++++++..++
T Consensus 241 t~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~ 320 (572)
T PRK06456 241 TFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDV 320 (572)
T ss_pred cCccCcCCCCCCccccccCCCCCCHHHHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHhCCccCCCe
Confidence 999999999999999999999998888999999999999999998887766655543 6789999999999999999999
Q ss_pred eEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc-cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 382 SICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 382 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
.+++|++.+|++|.+.+..... ......|.+++...++.+.... .....++++..+++.|++.+++ |.+|+.|+|+
T Consensus 321 ~i~~D~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~ii~~d~g~ 397 (572)
T PRK06456 321 GIYGNAKIILRELIKAITELGQ--KRDRSAWLKRVKEYKEYYSQFYYTEENGKLKPWKIMKTIRQALPR-DAIVTTGVGQ 397 (572)
T ss_pred EEecCHHHHHHHHHHHhhhccc--ccccHHHHHHHHHHHHhchhhcccccCCCcCHHHHHHHHHHhCCC-CEEEEECCcH
Confidence 9999999999999987764211 1123568877766554433211 1223469999999999999999 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|..+++...+|.+|+.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++||++|+++||+||++
T Consensus 398 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i~ivV~NN~~ 477 (572)
T PRK06456 398 HQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPVISVIFDNRT 477 (572)
T ss_pred HHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHHhCCCeEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
|||++++|+..|+.+.....+ ...+||.++|++||+++++|++.+||+++|+++++.++|+||||.++++++.
T Consensus 478 yg~i~~~q~~~~~~~~~~~~~-------~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~v~~~~~~ 550 (572)
T PRK06456 478 LGLVRQVQDLFFGKRIVGVDY-------GPSPDFVKLAEAFGALGFNVTTYEDIEKSLKSAIKEDIPAVIRVPVDKEELA 550 (572)
T ss_pred hHHHHHHHHHhhCCCcccccC-------CCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 999999988776543322211 1358999999999999999999999999999999999999999999998888
Q ss_pred ccccCCCcccccccccCCCCCC
Q 040733 621 VPMIPYDKSFKDTILEDDGRAL 642 (643)
Q Consensus 621 ~p~~~~~~~~~~~~~~~~~~~~ 642 (643)
.|+.+.+..++.+... ++|.+
T Consensus 551 ~~~~~~~~~~~~~~~~-~~~~~ 571 (572)
T PRK06456 551 LPTLPPGGRLKQVILR-DPRKS 571 (572)
T ss_pred CCCCCCCCchhhhhcc-CCcCC
Confidence 8888877666666555 66644
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-103 Score=887.65 Aligned_cols=543 Identities=46% Similarity=0.765 Sum_probs=483.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
.++++|+|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+||||||||+||+||||++|+|||++|++
T Consensus 14 ~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~ 93 (570)
T PRK06725 14 EVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNLV 93 (570)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 57999999999999999999999999999999999876799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++||.+++|||+|+|+.++...+++.+|++|+..+++++|||++++.++++++++|++||+.|.++|+|||||+||.
T Consensus 94 ~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 94 TGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred HHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCC
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|++.+++...+......+.+.. ...++++.+++++++|++||||+|++|+|+. ++.++|.+|||++|+||++|++|
T Consensus 174 Dv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~ 251 (570)
T PRK06725 174 DVQNEKVTSFYNEVVEIPGYKP--EPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLMG 251 (570)
T ss_pred chhhcccccccCcccccccCCC--CCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEECCcc
Confidence 9998776321111111111111 1236788899999999999999999999997 67899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||.||++||+++|++|..++..+++++++||+||+||++++++.++.+..+.+++++||||.|+.+++++++.++.|++|
T Consensus 252 kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD 331 (570)
T PRK06725 252 LGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGD 331 (570)
T ss_pred CcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEecC
Confidence 99999999999999999999889999999999999999999888876655667778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHH
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAI 466 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~ 466 (643)
+..+|++|++.+... ....|.+++.+.+.+++.......+++++..+++.|++.+++ |.||+.|+|++..|..
T Consensus 332 ~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-d~iiv~d~g~~~~~~~ 404 (570)
T PRK06725 332 VKKALHMLLHMSIHT------QTDEWLQKVKTWKEEYPLSYKQKESELKPQHVINLVSELTNG-EAIVTTEVGQHQMWAA 404 (570)
T ss_pred HHHHHHHHHHhcccc------CcHHHHHHHHHHHHhChhhhcccCCCcCHHHHHHHHHhhCCC-CcEEEeCCcHHHHHHH
Confidence 999999998876431 124687777666554432111123569999999999999999 9999999999999999
Q ss_pred HhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 467 QFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 467 ~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
++++.+.|++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|+++||+|+++|++|+++||+||++|+++++
T Consensus 405 ~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~ 484 (570)
T PRK06725 405 HFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINNKFLGMVRQ 484 (570)
T ss_pred HhccccCCCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEEEEECCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPY 626 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~ 626 (643)
.|...|+.+.... ....+||.++|++||+++++|++.+||+++++++++.++|+||||++++++...|+++.
T Consensus 485 ~q~~~~~~~~~~~--------~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~id~~~~~~~~~~~ 556 (570)
T PRK06725 485 WQEMFYENRLSES--------KIGSPDFVKVAEAYGVKGLRATNSTEAKQVMLEAFAHEGPVVVDFCVEEGENVFPMVPP 556 (570)
T ss_pred HHHHhcCCccccC--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCccccCCccCC
Confidence 8876665433222 12368999999999999999999999999999999999999999999988876666665
Q ss_pred Cc
Q 040733 627 DK 628 (643)
Q Consensus 627 ~~ 628 (643)
+.
T Consensus 557 ~~ 558 (570)
T PRK06725 557 NK 558 (570)
T ss_pred CC
Confidence 43
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-103 Score=889.44 Aligned_cols=549 Identities=45% Similarity=0.754 Sum_probs=487.0
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
++.++++|+|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 13 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N 92 (571)
T PRK07710 13 EKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGATN 92 (571)
T ss_pred cccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 44579999999999999999999999999999999998767999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+||||+++...+++.+|++||..+++++|||++++.+++++++.+++|++.|.++|+|||||+|
T Consensus 93 ~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 172 (571)
T PRK07710 93 VVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDI 172 (571)
T ss_pred HHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++...+.....++.+.+. ..+++..+++++++|++||||+|++|+|+. ++.+++++|+|++|+||++|+
T Consensus 173 P~Dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 250 (571)
T PRK07710 173 PKDMVVEEGEFCYDVQMDLPGYQPN--YEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTL 250 (571)
T ss_pred ChhHhhccccccccccccccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHHHHHHHHhCCCEEEcC
Confidence 9999987653211111112221111 125778899999999999999999999986 577899999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||.||++||+++|++|..+...++++++++|+||+||++++++.++.+..|.++.++||||+|+.+++++++.++.++
T Consensus 251 ~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~ 330 (571)
T PRK07710 251 LGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIV 330 (571)
T ss_pred ccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHhcCcCCCCeEEe
Confidence 99999999999999999999999999999999999999999998888776667777899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHH
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMW 464 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~ 464 (643)
+|++.+|++|++.+... .....|.+++...+.+.........+++++..+++.|++.+++ +.+++.|+|++..|
T Consensus 331 ~D~~~~l~~L~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~iv~~d~g~~~~~ 404 (571)
T PRK07710 331 ADAKQALQVLLQQEGKK-----ENHHEWLSLLKNWKEKYPLSYKRNSESIKPQKAIEMLYEITKG-EAIVTTDVGQHQMW 404 (571)
T ss_pred cCHHHHHHHHHHhhhcc-----CCcHHHHHHHHHHHHhChhhhcCCCCCcCHHHHHHHHHhhCCC-CeEEEECCcHHHHH
Confidence 99999999998766431 1235688777666554432211223569999999999999998 99999999999999
Q ss_pred HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 465 AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 465 ~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
..++++.++|++|++++++|+|||++|+|||++++.|+++||+++|||||+|++|||+|++||++|+++||+||++|+++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~ivV~NN~~~~~i 484 (571)
T PRK07710 405 AAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNNEALGMV 484 (571)
T ss_pred HHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEECchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccccc
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMI 624 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~ 624 (643)
++.|...|+.......+ ...+||.++|++||+++++|++.+||+++++++++.++|+||||.++++++..|++
T Consensus 485 ~~~~~~~~~~~~~~~~~-------~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~vd~~~~~~~~~ 557 (571)
T PRK07710 485 RQWQEEFYNQRYSHSLL-------SCQPDFVKLAEAYGIKGVRIDDELEAKEQLQHAIELQEPVVIDCRVLQSEKVMPMV 557 (571)
T ss_pred HHHHHHHhCCcceeccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcccccccc
Confidence 99887766543322211 24589999999999999999999999999999999999999999999988877777
Q ss_pred CCCccc
Q 040733 625 PYDKSF 630 (643)
Q Consensus 625 ~~~~~~ 630 (643)
+.+..+
T Consensus 558 ~~~~~~ 563 (571)
T PRK07710 558 APGKGL 563 (571)
T ss_pred CCCCch
Confidence 665433
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-103 Score=886.18 Aligned_cols=543 Identities=44% Similarity=0.767 Sum_probs=481.8
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.+++++|+|++.|+++||++|||+||+++++|+++|.+.+|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 6 ~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~ 85 (561)
T PRK06048 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATNL 85 (561)
T ss_pred ccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHH
Confidence 35799999999999999999999999999999999977669999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++||.+++|||+|+|++++...+.+.+|++||..+++++|||++++.+++++++++++|++.|.++++|||||+||
T Consensus 86 ~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 86 VTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred HHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.+++..........+.+.+. ..++.+.+++++++|.+||||+|++|+|++ ++.+++++|||++|+||++|++
T Consensus 166 ~dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~ 243 (561)
T PRK06048 166 KDVTTAEIDFDYPDKVELRGYKPT--YKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLM 243 (561)
T ss_pred hhhhhcccccccCcccccccCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHHHHHHhCCCEEEccc
Confidence 999987653211110011111111 125778999999999999999999999997 6789999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEec
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICA 385 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~ 385 (643)
|||+||++||+++|++|..+...++++++++|+||+||+++++..++.+..+.++.++||||+|+.+++++++.++.|++
T Consensus 244 ~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~ 323 (561)
T PRK06048 244 GIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEISKNVKVDVPIVG 323 (561)
T ss_pred cCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEEe
Confidence 99999999999999999999999999999999999999999988887665566778999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHH
Q 040733 386 DAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465 (643)
Q Consensus 386 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~ 465 (643)
|++.+|++|++.+... ....|.+++...+.+++........++++..+++.|++.++ +.+++.|+|++..|.
T Consensus 324 D~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~p--~~iiv~d~g~~~~~~ 395 (561)
T PRK06048 324 DAKQVLKSLIKYVQYC------DRKEWLDKINQWKKEYPLKYKEREDVIKPQYVIEQIYELCP--DAIIVTEVGQHQMWA 395 (561)
T ss_pred CHHHHHHHHHHhcccc------CcHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhCC--CcEEEEcCcHHHHHH
Confidence 9999999999876532 12468777666554443222222457999999999999988 578889999999999
Q ss_pred HHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 466 IQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
.++++.++|++|++++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++|||+|+++||+||++|++++
T Consensus 396 ~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~ 475 (561)
T PRK06048 396 AQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVAILNNGYLGMVR 475 (561)
T ss_pred HHhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHHcCCCeEEEEEECCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~ 625 (643)
+.|...|+.++....+ ...+||.++|++||+++++|++.+||+++|+++++.++|+||||++++++...|+.+
T Consensus 476 ~~~~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~~~~~p~liev~~~~~~~~~~~~~ 548 (561)
T PRK06048 476 QWQELFYDKRYSHTCI-------KGSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAVASDRPVVIDFIVECEENVSPMVP 548 (561)
T ss_pred HHHHHHcCCcccccCC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccccCCcCC
Confidence 8887766544322211 246899999999999999999999999999999999999999999999887777776
Q ss_pred CC
Q 040733 626 YD 627 (643)
Q Consensus 626 ~~ 627 (643)
.+
T Consensus 549 ~~ 550 (561)
T PRK06048 549 AG 550 (561)
T ss_pred CC
Confidence 54
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-103 Score=886.67 Aligned_cols=549 Identities=43% Similarity=0.735 Sum_probs=485.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||||++|+||||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 47899999999999999999999999999999999765 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.|++|++.|+++++|||||+||
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.+++..........+.+. + ...++++.+++++++|.+||||+|++|+|+. ++.++|++|+|++++||++|++
T Consensus 162 ~Dv~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~ 239 (563)
T PRK08527 162 KDVTATLGEFEYPKEISLKTYK-P-TYKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLM 239 (563)
T ss_pred HhHhhhhhccccccccccccCC-C-CCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc
Confidence 9998776431111111111111 1 1124778899999999999999999999997 5789999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEec
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICA 385 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~ 385 (643)
|||+||++||+++|++|..++...++++++||+||+||++++++.++.+..|.++.++||||+|+.+++++++.++.+++
T Consensus 240 ~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 319 (563)
T PRK08527 240 ARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVG 319 (563)
T ss_pred cCCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEec
Confidence 99999999999999999999999999999999999999999988887776677778999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHH
Q 040733 386 DAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465 (643)
Q Consensus 386 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~ 465 (643)
|++.+|++|++.++... ......|.+++.+.+...+.......+++++.++++.|++.+++ |.|++.|+|++..|.
T Consensus 320 D~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-d~iv~~d~g~~~~~~ 395 (563)
T PRK08527 320 DLKNVLKEMLEELKEEN---PTTYKEWREILKRYNELHPLSYEDSDEVLKPQWVIERVGELLGD-DAIISTDVGQHQMWV 395 (563)
T ss_pred CHHHHHHHHHHhhhhcc---ccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHhhCCC-CeEEEECCcHHHHHH
Confidence 99999999998876431 11234688877666554332222223579999999999999999 999999999999999
Q ss_pred HHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 466 IQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
.++++.+.|++|++++++|+|||++|+|||++++.|+++||+|+|||||+|++|||+|++++|+|+++||+||++|++++
T Consensus 396 ~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i~ 475 (563)
T PRK08527 396 AQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINIILNNNFLGMVR 475 (563)
T ss_pred HHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHHhCCCeEEEEEECCcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~ 625 (643)
++|...|+.++....+ ...+||.++|++||+++++|++.+||+++|+++++.++|+||||++++.++..|+.+
T Consensus 476 ~~~~~~~~~~~~~~~~-------~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~v~~~~~~~~~~~ 548 (563)
T PRK08527 476 QWQTFFYEERYSETDL-------STQPDFVKLAESFGGIGFRVTTKEEFDKALKEALESDKVALIDVKIDRFENVLPMVP 548 (563)
T ss_pred HHHHhhcCCceeeccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEECCcccccccCC
Confidence 9887666543332211 235899999999999999999999999999999999999999999999888777777
Q ss_pred CCccc
Q 040733 626 YDKSF 630 (643)
Q Consensus 626 ~~~~~ 630 (643)
.+..+
T Consensus 549 ~~~~~ 553 (563)
T PRK08527 549 AGGAL 553 (563)
T ss_pred CCCCH
Confidence 65433
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-103 Score=889.30 Aligned_cols=556 Identities=44% Similarity=0.713 Sum_probs=487.1
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
...++++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.||||++|+|||+||+|+||+|+||++|+|||++
T Consensus 28 ~~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 107 (612)
T PRK07789 28 PERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGAT 107 (612)
T ss_pred cccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 3457999999999999999999999999999999999766 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
|+++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++++++||+.|+++|+|||||+
T Consensus 108 N~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~ 187 (612)
T PRK07789 108 NLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVD 187 (612)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 226 IPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
||.|++.+++...+.....++...+ ...++.+.+++++++|.+||||+||+|+|+. ++.+++++|+|++|+||++|
T Consensus 188 iP~Dv~~~~~~~~~~~~~~~~~~~~--~~~p~~~~i~~~~~~L~~AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~tt 265 (612)
T PRK07789 188 IPKDALQAQTTFSWPPRMDLPGYRP--VTKPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTT 265 (612)
T ss_pred EccchhhcccccccCccccccCCCC--CCCCCHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHCCCEEEc
Confidence 9999998765321111111111111 1135778899999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||+||++||+++|.+|..++..++++++++|+||++|++++++.++.+..|.++.++||||+|+.+++++++.++.|
T Consensus 266 ~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i~~~~~~~~~i 345 (612)
T PRK07789 266 LMARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPI 345 (612)
T ss_pred ccccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHHhCCCCCCCeEE
Confidence 99999999999999999999998888999999999999999999888776655677788999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCcc-cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChh
Q 040733 384 CADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQKKKYPFSY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQH 461 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~ 461 (643)
++|++.+|++|++.++...... ......|.+.+.+.+.+..... ...+.++++..+++.|++.+++ |.+++.|+|++
T Consensus 346 ~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~ivv~d~G~~ 424 (612)
T PRK07789 346 VGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDEPSDGSLAPQYVIERLGEIAGP-DAIYVAGVGQH 424 (612)
T ss_pred ecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCccccccccCCCcCHHHHHHHHHhhCCC-CeEEEECCcHH
Confidence 9999999999998876432111 1234578887776655432211 1123569999999999999998 99999999999
Q ss_pred HHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCc
Q 040733 462 QMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYL 541 (643)
Q Consensus 462 ~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~ 541 (643)
..|+.+++++.++++|+.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++||++|+++||+||++|
T Consensus 425 ~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~ivV~NN~~~ 504 (612)
T PRK07789 425 QMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGIPIKVALINNGNL 504 (612)
T ss_pred HHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhccHHHHHHHHHcCCCeEEEEEECCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC-CCcEEEEEEeCCCCCc
Q 040733 542 GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET-PGPYLLDVMVSYQEHV 620 (643)
Q Consensus 542 g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~-~gp~lIeV~v~~~~~~ 620 (643)
|++++.|...|+.+.....+... ....+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++.
T Consensus 505 g~i~~~q~~~~~~~~~~~~~~~~---~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~~ 581 (612)
T PRK07789 505 GMVRQWQTLFYEERYSNTDLHTH---SHRIPDFVKLAEAYGCVGLRCEREEDVDAVIEKARAINDRPVVIDFVVGKDAMV 581 (612)
T ss_pred HHHHHHHHHhhCCCcceeecCcC---CCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEECCcccc
Confidence 99999987766654332222100 1134899999999999999999999999999999985 8999999999988877
Q ss_pred ccccCCCc
Q 040733 621 VPMIPYDK 628 (643)
Q Consensus 621 ~p~~~~~~ 628 (643)
.|+.+.+.
T Consensus 582 ~~~~~~~~ 589 (612)
T PRK07789 582 WPMVAAGT 589 (612)
T ss_pred CCccCCCC
Confidence 77776554
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-102 Score=885.00 Aligned_cols=546 Identities=31% Similarity=0.488 Sum_probs=473.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N 146 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+++ |++|.||||++|+|||+||||+| |+++||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N 82 (591)
T PRK11269 3 KMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (591)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH
Confidence 479999999999999999999999999999999998764 99999999999999999999999 9999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++||.+++|||+|+||+++...+++.+|++||.++++++|||++++.++++++++|++||+.|+++|+|||||+|
T Consensus 83 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 162 (591)
T PRK11269 83 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDL 162 (591)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++..........+. ..+.++++.+++++++|++||||+||+|+|+. ++.+++.+|+|++|+||++|+
T Consensus 163 P~Dv~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~ 238 (591)
T PRK11269 163 PFDVQVAEIEFDPDTYEPLPV----YKPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTL 238 (591)
T ss_pred Chhhhhccccccccccccccc----CCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHHhCCCeEecc
Confidence 999988765311111001111 11235788899999999999999999999986 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCC-CcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDELCLRMVGMF-GTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~-~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+|||+||++||+++|++|.. +...+++++++||+||+||++++++.++.+..+.++.++||||+|+.++++++++++.|
T Consensus 239 ~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~~~~~~~~~i 318 (591)
T PRK11269 239 MGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIGRVFGPDLGI 318 (591)
T ss_pred cccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhCCCCCCCeEE
Confidence 99999999999999999875 56778889999999999999999888876665667778999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|++.+...... .......|.+++.+.+..+.......+.++++..+++.|++.+++ |.+|+.|+|++.
T Consensus 319 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-d~ivv~d~g~~~ 397 (591)
T PRK11269 319 VSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTLLRKTHFDNVPIKPQRVYEEMNKAFGR-DTCYVSTIGLSQ 397 (591)
T ss_pred EeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhchhhccCCCCCcCHHHHHHHHHHhcCC-CcEEEECCcHHH
Confidence 999999999999877542111 012235788777665544321111223469999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..++++..+|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++||+||++||
T Consensus 398 ~~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~~vV~NN~~~g 477 (591)
T PRK11269 398 IAAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLPYIHVLVNNAYLG 477 (591)
T ss_pred HHHHHhcccCCCCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHHhCCCeEEEEEeCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccC--CCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEEeCC
Q 040733 543 MNVEYEDRYFEANRANSFLG--DPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVMVSY 616 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g--~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~v~~ 616 (643)
|+++.|..++........+. .........+||+++|++||+++.+|++++||+++|+++++ .+||+||||++++
T Consensus 478 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 478 LIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred HHHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 99998865332211111110 00011224689999999999999999999999999999984 7899999999997
Q ss_pred CCC
Q 040733 617 QEH 619 (643)
Q Consensus 617 ~~~ 619 (643)
++.
T Consensus 558 ~~~ 560 (591)
T PRK11269 558 VTN 560 (591)
T ss_pred ccC
Confidence 663
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-102 Score=880.47 Aligned_cols=552 Identities=44% Similarity=0.757 Sum_probs=482.9
Q ss_pred CCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh---CC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 040733 65 APDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR---SN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSS 140 (643)
Q Consensus 65 ~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~---~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~ 140 (643)
.|.+.++++++|++.|+++||++|||+||+++++|+++|.+ .+ |++|.+|||++|+|||+||+|++|||+||++|+
T Consensus 5 ~~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~ 84 (585)
T CHL00099 5 LTLREKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATS 84 (585)
T ss_pred cccccccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 46677899999999999999999999999999999999964 34 999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCC
Q 040733 141 GPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPG 220 (643)
Q Consensus 141 GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~G 220 (643)
|||++|+++||++|+.+++|||+|+|+.++...+++.+|++|+..+++++|||++++.+++++++.+++||+.|.++|+|
T Consensus 85 GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~G 164 (585)
T CHL00099 85 GPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPG 164 (585)
T ss_pred CCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcccchhhhccCCCCCCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHH
Q 040733 221 PVLIDIPVDVQLELAVPNWNQP----CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVG 294 (643)
Q Consensus 221 PV~i~iP~Dv~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae 294 (643)
||||+||.|++.+++....... ...+.... ...++++.+++++++|++||||+||+|+|+. ++.+++++|+|
T Consensus 165 PV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae 242 (585)
T CHL00099 165 PVLIDIPKDVGLEKFDYYPPEPGNTIIKILGCRP--IYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITELAE 242 (585)
T ss_pred eEEEecChhhhhhhcccccccccccccccccCCC--CCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHHHHHH
Confidence 9999999999887763210000 00111110 1135788999999999999999999999996 67899999999
Q ss_pred HhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCccccc
Q 040733 295 LTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 295 ~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~ 374 (643)
++|+||++|++|||+||++||+++|++|..+...+++++.+|||||++|++++++.++++..|.++.++||||+|+.+++
T Consensus 243 ~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~ 322 (585)
T CHL00099 243 LYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDPAEIG 322 (585)
T ss_pred HHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCHHHhC
Confidence 99999999999999999999999999998899889999999999999999999888766655667789999999999999
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVG-FMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETI 453 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~i 453 (643)
+++++++.|.+|++.+|++|++.+...... .......|.+++.+.++.+....+....++++.++++.|++.++ |.+
T Consensus 323 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~--d~i 400 (585)
T CHL00099 323 KNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPLLIPKPSTSLSPQEVINEISQLAP--DAY 400 (585)
T ss_pred CCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCC--CeE
Confidence 999999999999999999999887643210 01123568777766555432211122457999999999999988 688
Q ss_pred EEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEE
Q 040733 454 ISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533 (643)
Q Consensus 454 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~i 533 (643)
++.|+|++..|..++++. ++++|+.++++|+|||++|+|||++++.|+++||+|+|||||+|++|||+|+++|++|+++
T Consensus 401 v~~d~G~~~~~~~~~~~~-~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~~~~ 479 (585)
T CHL00099 401 FTTDVGQHQMWAAQFLKC-KPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNLPIKI 479 (585)
T ss_pred EEECCcHHHHHHHHhccC-CCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHHhCCCeEE
Confidence 889999999999999986 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEE
Q 040733 534 LLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613 (643)
Q Consensus 534 vV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~ 613 (643)
||+||++|+++++.|...|+.+.....+ ....+||.++|++||+++++|++.+||+++|+++++.+||+||||+
T Consensus 480 vV~NN~~y~~i~~~q~~~~~~~~~~~~~------~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~ 553 (585)
T CHL00099 480 IIINNKWQGMVRQWQQAFYGERYSHSNM------EEGAPDFVKLAEAYGIKGLRIKSRKDLKSSLKEALDYDGPVLIDCQ 553 (585)
T ss_pred EEEECCcchHHHHHHHHhcCCCcccccC------CCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999999999998767654432211 1235899999999999999999999999999999999999999999
Q ss_pred eCCCCCcccccCCC
Q 040733 614 VSYQEHVVPMIPYD 627 (643)
Q Consensus 614 v~~~~~~~p~~~~~ 627 (643)
++++++..|+.+.+
T Consensus 554 v~~~~~~~~~~~~~ 567 (585)
T CHL00099 554 VIEDENCYPMVAPG 567 (585)
T ss_pred ECCCcccCCCcCCC
Confidence 99888777766654
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-102 Score=878.41 Aligned_cols=542 Identities=40% Similarity=0.685 Sum_probs=483.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+++++++|++.|+++||++|||+||+++++|+++|.++ +|++|.+|||++|+||||||||++|+|+||++|+|||++|+
T Consensus 12 ~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 91 (564)
T PRK08155 12 RFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNL 91 (564)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHH
Confidence 36899999999999999999999999999999999876 49999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+|+|+.++...+++.+|++|+.++++++|||++++.++++++..+++|++.|.++|+|||||+||
T Consensus 92 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 92 VTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred HHHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.+++.... .+ .+... ..+..++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|++
T Consensus 172 ~Dv~~~~~~~~~-~~--~~~~~-~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~ 247 (564)
T PRK08155 172 KDVQTAVIELEA-LP--APAEK-DAAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLM 247 (564)
T ss_pred HhHHhhhccccc-CC--Ccccc-CCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc
Confidence 999987763210 00 01100 111235777899999999999999999999997 5789999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEec
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICA 385 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~ 385 (643)
|||+||++||+++|.+|..+...++++++++|+||++|++++++.++++..|.++.++||||+|+.+++++++.++.|++
T Consensus 248 ~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~ 327 (564)
T PRK08155 248 ALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQA 327 (564)
T ss_pred ccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhCCCcCCCeEEec
Confidence 99999999999999999888888899999999999999999988776665567778999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHH
Q 040733 386 DAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465 (643)
Q Consensus 386 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~ 465 (643)
|++.+|++|++.+... ....|.+++...+++++...+....++++..+++.|++.+++ |.+|+.|+|++..|.
T Consensus 328 D~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~-~~iv~~D~G~~~~~~ 400 (564)
T PRK08155 328 DVDDVLAQLLPLVEAQ------PRAEWHQLVADLQREFPCPIPKADDPLSHYGLINAVAACVDD-NAIITTDVGQHQMWT 400 (564)
T ss_pred CHHHHHHHHHHhhccc------chHHHHHHHHHHHHhChhhcccCCCCcCHHHHHHHHHHhCCC-CeEEEECCchHHHHH
Confidence 9999999998776431 234688777666555432212223479999999999999999 999999999999999
Q ss_pred HHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 466 IQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
.+++++++|++|+.++++|+|||++|+|+|++++.|+++||+++|||||+|++|||+|++++++|+++||+||++||+++
T Consensus 401 ~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~ 480 (564)
T PRK08155 401 AQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNNEALGLVH 480 (564)
T ss_pred HHhccccCCCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~ 625 (643)
+.|...|+.+.....+ ...+||.++|++||+++++|++++||+++|+++++.++|+||||.++++++..|+.+
T Consensus 481 ~~q~~~~~~~~~~~~~-------~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~~~~~~~~~~~~~ 553 (564)
T PRK08155 481 QQQSLFYGQRVFAATY-------PGKINFMQIAAGFGLETCDLNNEADPQAALQEAINRPGPALIHVRIDAEEKVYPMVP 553 (564)
T ss_pred HHHHHhcCCCeeeccC-------CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcccCCcCC
Confidence 9887766654332211 245899999999999999999999999999999999999999999999888777776
Q ss_pred CCc
Q 040733 626 YDK 628 (643)
Q Consensus 626 ~~~ 628 (643)
.+.
T Consensus 554 ~~~ 556 (564)
T PRK08155 554 PGA 556 (564)
T ss_pred CCC
Confidence 654
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-101 Score=875.33 Aligned_cols=535 Identities=26% Similarity=0.395 Sum_probs=469.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+||+|+||++|+|||++|++
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~ 80 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCV 80 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHH
Confidence 47999999999999999999999999999999999876799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++||.+++|||+|+|+.++...+++.+|++|+..+++++|||++++.+++++++.+++||+.|.+++ |||||+||.
T Consensus 81 ~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-GPV~l~iP~ 159 (579)
T TIGR03457 81 TAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREM-GPAQLNIPR 159 (579)
T ss_pred HHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCC-CCEEEEeCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCC
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|++.+++......+ .+ + ....++++.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++|++|
T Consensus 160 Dv~~~~~~~~~~~~--~~-~---~~~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~g 233 (579)
T TIGR03457 160 DYFYGEIDVEIPRP--VR-L---DRGAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLH 233 (579)
T ss_pred chhhhhcccccCcc--cc-c---CCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEcccc
Confidence 99987764211110 01 1 11235778899999999999999999999997 67899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccC---ccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTS---KLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~---~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
||+||++||+++|++|..++..+++++++||+||+||++++++.+. ....+..++++||||+|+.++++++..++.|
T Consensus 234 kg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i 313 (579)
T TIGR03457 234 NDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGI 313 (579)
T ss_pred cccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCeeE
Confidence 9999999999999999999888999999999999999999876542 1123455789999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCC---------CCChhHHHHHHHHHHHhCCC-c-------ccCCCCCCCHHHHHHHHHhc
Q 040733 384 CADAKLVFNRMNMILESKGVGF---------MFDFSAWREELHEQKKKYPF-S-------YKTFGEEIPPQYAIQILNEL 446 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~---------~~~~~~w~~~~~~~~~~~~~-~-------~~~~~~~i~~~~~~~~L~~~ 446 (643)
++|++.+|++|++.+....... ...+..|.+++.+.+..... . ......++++.++++.|++.
T Consensus 314 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 393 (579)
T TIGR03457 314 CGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLRELEKA 393 (579)
T ss_pred ecCHHHHHHHHHHhhhhcccccchhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCHHHHHHHHHHh
Confidence 9999999999998886421000 01234566655544322110 0 01123469999999999999
Q ss_pred CCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHH
Q 040733 447 TDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKA 526 (643)
Q Consensus 447 l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~ 526 (643)
+++ |.|++.|+|++..|..++++.++|++|++++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++|
T Consensus 394 l~~-~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Tavr 472 (579)
T TIGR03457 394 MPE-DAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSMNEIMTAVR 472 (579)
T ss_pred CCC-CeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh---
Q 040733 527 ENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE--- 603 (643)
Q Consensus 527 ~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~--- 603 (643)
|++|+++||+||++||++++.|...|+.++....+ ...+||.++|++||+++++|++++||+++|+++++
T Consensus 473 ~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~g~~v~~~~el~~al~~a~~~~~ 545 (579)
T TIGR03457 473 HDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTEL-------ESELSFAGIADAMGAKGVVVDKPEDVGPALKKAIAAQA 545 (579)
T ss_pred hCCCeEEEEEECcchHHHHHHHHHhhCCcceeccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999988777654333221 12369999999999999999999999999999987
Q ss_pred CCCcEEEEEEeCCCC
Q 040733 604 TPGPYLLDVMVSYQE 618 (643)
Q Consensus 604 ~~gp~lIeV~v~~~~ 618 (643)
.++|+||||++++++
T Consensus 546 ~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 546 EGKTTVIEIVCTREL 560 (579)
T ss_pred CCCcEEEEEEeCCCc
Confidence 589999999999876
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-101 Score=873.21 Aligned_cols=551 Identities=38% Similarity=0.672 Sum_probs=482.2
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
++++++|++.|+++||++|||+||+++++|+++|.++ +|++|.+|||++|+|||+||+|++|+|+||++|+|||++|++
T Consensus 4 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l 83 (574)
T PRK06882 4 LSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAI 83 (574)
T ss_pred ccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHH
Confidence 6899999999999999999999999999999999875 599999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++|+.+++|||+|+|++++...+++.+|++|+..+++++|||++++.+++++++.+++|++.|.++++|||||+||.
T Consensus 84 ~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 84 TGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 229 DVQLELAVPNW--NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 229 Dv~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|++.+.+.... ........+.+. ..++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 164 Dv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 241 (574)
T PRK06882 164 DMVNPANKFTYEYPEEVSLRSYNPT--VQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSL 241 (574)
T ss_pred HHhhhhcccccccCcccccccCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEcC
Confidence 99876542110 000011111111 124678899999999999999999999997 567899999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||+||++||+++|++|..++..+++++++||+||+||++++++.++.+..+.+++++||||.|+.+++++++.++.|+
T Consensus 242 ~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~ 321 (574)
T PRK06882 242 MGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSISKNVPAYIPIV 321 (574)
T ss_pred ccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhcCccCCceEEe
Confidence 99999999999999999998999999999999999999999998888776666677899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCC-CCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHH
Q 040733 385 ADAKLVFNRMNMILESKGV-GFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQM 463 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~ 463 (643)
+|++.+|++|.+.+..... ........|.+++.+.+.+..........++++..+++.|++.+++ +.+++.|+|++..
T Consensus 322 ~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~ii~~d~g~~~~ 400 (574)
T PRK06882 322 GSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLEFDRTSDVIKPQQVVEAIYRLTNG-DAYVASDVGQHQM 400 (574)
T ss_pred cCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhhhccCCCCcCHHHHHHHHHhhcCC-CeEEEecCchhHH
Confidence 9999999999988754211 0012235687777665544322111123469999999999999998 9999999999999
Q ss_pred HHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchh
Q 040733 464 WAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543 (643)
Q Consensus 464 ~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~ 543 (643)
|..++++...|++|+.++++|+|||++|+|||++++.|+++||+|+|||||+|++|||+|+++|++|+++||+||++|++
T Consensus 401 ~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lpv~~vV~NN~~~~~ 480 (574)
T PRK06882 401 FAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIVSLNNRFLGM 480 (574)
T ss_pred HHHHhccccCCCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEECchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC-CCcEEEEEEeCCCCCccc
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET-PGPYLLDVMVSYQEHVVP 622 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~-~gp~lIeV~v~~~~~~~p 622 (643)
++++|...|+.+.....+ ...+||.++|++||+++++|++.+||+++|+++++. ++|+||||+++++++..|
T Consensus 481 i~~~q~~~~~~~~~~~~~-------~~~~d~~~la~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~liev~i~~~~~~~~ 553 (574)
T PRK06882 481 VKQWQDLIYSGRHSQVYM-------NSLPDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSIKDKLVFVDVNVDETEHVYP 553 (574)
T ss_pred HHHHHHHhcCCcccccCC-------CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhcCCCcEEEEEEecCccccCC
Confidence 999987666543222211 134799999999999999999999999999999985 899999999999888878
Q ss_pred ccCCCccc
Q 040733 623 MIPYDKSF 630 (643)
Q Consensus 623 ~~~~~~~~ 630 (643)
+.+.+..+
T Consensus 554 ~~~~~~~~ 561 (574)
T PRK06882 554 MQIRGGAM 561 (574)
T ss_pred ccCCCCch
Confidence 77765433
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-101 Score=874.17 Aligned_cols=532 Identities=24% Similarity=0.325 Sum_probs=464.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+++++|+|++.|+++||+||||+||+++++|+++|.+. +|++|.+|||++|+||||||||+||+||||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 81 (597)
T PRK08273 2 SQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIH 81 (597)
T ss_pred CccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 47899999999999999999999999999999999764 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccc-eeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT-KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~t-k~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
+++||++||.|++|||+|+|++++...+++.+|++|+.++|+++| ||++++.+++++++.+++|++.|++++ |||||+
T Consensus 82 ~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~i~ 160 (597)
T PRK08273 82 LLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER-TVTAVI 160 (597)
T ss_pred HHHHHHHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCC-CCEEEE
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999976 999999
Q ss_pred cccchhhhccCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceee
Q 040733 226 IPVDVQLELAVPNWNQP---CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~t 302 (643)
||.|++.+++....... ...+.+. .....++++.+++++++|.+||||+|++|+|+.++.+++.+|||++|+||++
T Consensus 161 iP~Dv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~~a~~~l~~lae~~~~PV~t 239 (597)
T PRK08273 161 LPNDVQELEYEPPPHAHGTVHSGVGYT-RPRVVPYDEDLRRAAEVLNAGRKVAILVGAGALGATDEVIAVAERLGAGVAK 239 (597)
T ss_pred eCcchhhCcccCccccccccccccCCC-CCCCCCCHHHHHHHHHHHhcCCCEEEEECcchHhHHHHHHHHHHHhCCceee
Confidence 99999987653210000 0001111 1112367889999999999999999999999998899999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCee
Q 040733 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVS 382 (643)
Q Consensus 303 t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~ 382 (643)
|++|||+||++||+++|++|..|+..+++++++|||||+||++++.... ....+++++||||+|+.+++++++.++.
T Consensus 240 t~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG~~~~~~~~---~~~~~~~~~i~Id~d~~~~~~~~~~~~~ 316 (597)
T PRK08273 240 ALLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFPYSEF---LPKEGQARGVQIDIDGRMLGLRYPMEVN 316 (597)
T ss_pred cccCcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeCCCCCHHhc---CCCCCCCeEEEEeCCHHHcCCCCCCCce
Confidence 9999999999999999999999999999999999999999999853211 1112356899999999999999999999
Q ss_pred EecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc----ccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCC
Q 040733 383 ICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFS----YKTFGEEIPPQYAIQILNELTDDEETIISTGV 458 (643)
Q Consensus 383 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~ 458 (643)
|++|++.+|++|++.+.... ...|.+.+.+.+.++... ......+++|..+++.|++.+++ |.||+.|+
T Consensus 317 i~~D~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~-~~ivv~d~ 389 (597)
T PRK08273 317 LVGDAAETLRALLPLLERKK------DRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRLPD-NAILTADS 389 (597)
T ss_pred EecCHHHHHHHHHHhhhccC------CHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhCCC-CeEEEECC
Confidence 99999999999998776421 135766655544433211 01123569999999999999998 99999999
Q ss_pred ChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHh-----CCCeE
Q 040733 459 GQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAE-----NIPVK 532 (643)
Q Consensus 459 G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~-----~lpv~ 532 (643)
|++..|..++++.+++.+|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|+ +|||+|++|| ++|++
T Consensus 390 G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lpvi 469 (597)
T PRK08273 390 GSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPRLI 469 (597)
T ss_pred cHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999 6999999999 89999
Q ss_pred EEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEE
Q 040733 533 ILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDV 612 (643)
Q Consensus 533 ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV 612 (643)
+||+||++|+++++.|...++.+..... .....+||.++|++||+++++|++.+||+++|+++++.++|+||||
T Consensus 470 ivV~NN~~~~~i~~~q~~~~~~~~~~~~------~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV 543 (597)
T PRK08273 470 VLVLNNRDLNQVTWEQRVMEGDPKFEAS------QDLPDVPYARFAELLGLKGIRVDDPEQLGAAWDEALAADRPVVLEV 543 (597)
T ss_pred EEEEeCCcchHHHHHHHHhcCCCccccc------ccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999999999999888655543211111 1235689999999999999999999999999999999999999999
Q ss_pred EeCCCC
Q 040733 613 MVSYQE 618 (643)
Q Consensus 613 ~v~~~~ 618 (643)
.+++++
T Consensus 544 ~~~~~~ 549 (597)
T PRK08273 544 KTDPNV 549 (597)
T ss_pred EeCCCC
Confidence 999876
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-101 Score=866.96 Aligned_cols=547 Identities=47% Similarity=0.771 Sum_probs=484.5
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
|+++++|++.|+++||++|||+||+.+++|+++|.+. +|++|.||||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 5799999999999999999999999999999999864 499999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++|+.+++|||+|+|++++...+++.+|++||..+++++|||++++.+++++++++++|++.|.++++|||||+||.
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCC
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|++.+++..........+.+.+. ..+.+..+++++++|.+||||+|++|+|+. ++.++|.+|+|++|+||++|++|
T Consensus 161 dv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~ 238 (558)
T TIGR00118 161 DVTTAEIEYPYPEKVNLPGYRPT--VKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMG 238 (558)
T ss_pred hhhhhhccccccccccccCCCCC--CCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEcccc
Confidence 99987763211100111111110 124677899999999999999999999997 67899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||++|++||+++|++|..+...++++++++|+||+||++++++.++++..+.++.++||||.|+.++++++..++.|.+|
T Consensus 239 kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d 318 (558)
T TIGR00118 239 LGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIGKNVRVDIPIVGD 318 (558)
T ss_pred CCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhCCcCCCCeEEecC
Confidence 99999999999999999899999999999999999999999888877666777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHH
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAI 466 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~ 466 (643)
++.+|++|++.+..... .....|.++++..+.+..........++++..+++.|++.+++ +.||+.|+|++..|..
T Consensus 319 ~~~~l~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~iv~~d~g~~~~~~~ 394 (558)
T TIGR00118 319 ARNVLEELLKKLFELKE---RKESAWLEQINKWKKEYPLKMDYTEEGIKPQQVIEELSRVTKD-EAIVTTDVGQHQMWAA 394 (558)
T ss_pred HHHHHHHHHHhhhhccc---cCcHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhCCC-CeEEEeCCcHHHHHHH
Confidence 99999999987753210 1234688777666554332111223569999999999999999 9999999999999999
Q ss_pred HhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 467 QFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 467 ~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
+++..++|++|++++++|+|||++|+|||++++.|+++||+++|||||+|++|||+|++++++|+++||+||++|++++.
T Consensus 395 ~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~vv~NN~~~~~~~~ 474 (558)
T TIGR00118 395 QFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKILILNNRYLGMVRQ 474 (558)
T ss_pred HhcccCCCCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPY 626 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~ 626 (643)
.|...|..+.....+ ...+||.++|++||+++++|++.+||+++|+++++.++|+||||++++++...|++++
T Consensus 475 ~q~~~~~~~~~~~~~-------~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~~~~~~~~~~~~~~ 547 (558)
T TIGR00118 475 WQELFYEERYSHTHM-------GSLPDFVKLAEAYGIKGIRIEKPEELDEKLKEALSSNEPVLLDVVVDKPENVLPMVAP 547 (558)
T ss_pred HHHHhcCCceeeccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCCccccccccCC
Confidence 887766654332211 2358999999999999999999999999999999999999999999998888888876
Q ss_pred Ccc
Q 040733 627 DKS 629 (643)
Q Consensus 627 ~~~ 629 (643)
+..
T Consensus 548 ~~~ 550 (558)
T TIGR00118 548 GGG 550 (558)
T ss_pred CCc
Confidence 643
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-101 Score=863.83 Aligned_cols=531 Identities=28% Similarity=0.427 Sum_probs=465.9
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHH
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGL 151 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl 151 (643)
|+++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|+++||
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl 80 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL 80 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH
Confidence 57999999999999999999999999999999776699999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchh
Q 040733 152 MDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 152 ~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~ 231 (643)
++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++.+++++++.+++||+.|.++++|||||+||.|++
T Consensus 81 ~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~ 160 (539)
T TIGR02418 81 ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVV 160 (539)
T ss_pred HHHhhcCCCEEEEeCCCcccccccCcccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHh
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCC
Q 040733 232 LELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGL 309 (643)
Q Consensus 232 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~ 309 (643)
.+++...... +..... ...++++.+++++++|.+||||+|++|.|+. ++.+++++|+|++|+||++|++|||.
T Consensus 161 ~~~~~~~~~~----~~~~~~-~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~ 235 (539)
T TIGR02418 161 DSPVSVKAIP----ASYAPK-LGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQGAGA 235 (539)
T ss_pred hCcccccccC----cccCCC-CCCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEccccCcC
Confidence 8876421100 011111 1224667899999999999999999999996 57899999999999999999999999
Q ss_pred CCCCC-CCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHH
Q 040733 310 FPCTD-ELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAK 388 (643)
Q Consensus 310 ~~~~h-pl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~ 388 (643)
||++| |+++|++|..++..+++++++||+||++|+++.++.+..|. +..+.++||||.|+.+++++++.++.|++|++
T Consensus 236 i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~ 314 (539)
T TIGR02418 236 VSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWN-SENDATIVHIDVEPAQIDNNYQPDLELVGDIA 314 (539)
T ss_pred CCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEecCcccccCccccC-cCCCCeEEEEeCChHHcCCccCCCeEEecCHH
Confidence 99997 78999999989888899999999999999999877665443 22357899999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc-ccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHH
Q 040733 389 LVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFS-YKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQ 467 (643)
Q Consensus 389 ~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~ 467 (643)
.+|++|++.++.... .....+|.+++.+.++++... ......++++.++++.|++.+++ +.+|+.|+|++..|..+
T Consensus 315 ~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~ii~~d~G~~~~~~~~ 391 (539)
T TIGR02418 315 STLDLLAERIPGYEL--PPDALAILEDLKQQREALDRVPATLKQAHLHPLEIIKAMQAIVTD-DVTVTVDMGSHYIWMAR 391 (539)
T ss_pred HHHHHHHHhhccccC--ccchHHHHHHHHHHHHHhhhccccCCCCCcCHHHHHHHHHhhCCC-CCEEEECCcHHHHHHHH
Confidence 999999987764321 112335665555444332111 01122469999999999999999 99999999999999999
Q ss_pred hccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHH
Q 040733 468 FYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547 (643)
Q Consensus 468 ~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~ 547 (643)
++....|++++.+.++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++||++|+++||+||++|+++++.
T Consensus 392 ~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~ 471 (539)
T TIGR02418 392 YFRSYRARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHIIWNDNGYNMVEFQ 471 (539)
T ss_pred hcccCCCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHHhCCCeEEEEEECCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 548 q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
|...|+ +.... ....+||.++|++||+++.+|++++||+++|+++++.++|.||||+++++++.
T Consensus 472 ~~~~~~-~~~~~--------~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~p~lIev~v~~~~~~ 535 (539)
T TIGR02418 472 EEMKYQ-RSSGV--------DFGPIDFVKYAESFGAKGLRVESPDQLEPTLRQAMEVEGPVVVDIPVDYSDNP 535 (539)
T ss_pred HHHhcC-Ccccc--------cCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcccc
Confidence 776554 22222 12468999999999999999999999999999999999999999999987653
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-101 Score=867.12 Aligned_cols=535 Identities=28% Similarity=0.420 Sum_probs=468.1
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+.+++++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 2 ~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N 81 (552)
T PRK08617 2 DKKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSN 81 (552)
T ss_pred CccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhCCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhH
Confidence 34689999999999999999999999999999999998766999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+|+|++++...+++.+|++||.++++++|||++++.+++++++.+++||+.|.++++|||||+|
T Consensus 82 ~l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~i 161 (552)
T PRK08617 82 LATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSL 161 (552)
T ss_pred hHHHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++.... .. +..... ...++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 162 P~dv~~~~~~~~~--~~--~~~~~~-~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~ 236 (552)
T PRK08617 162 PQDVVDAPVTSKA--IA--PLSKPK-LGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETF 236 (552)
T ss_pred hhhhhhccccccc--cc--cccCCC-CCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEecc
Confidence 9999987763211 00 101111 1224677899999999999999999999986 577999999999999999999
Q ss_pred CCCCCCCCCCC-CcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDE-LCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hp-l~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+|||.||++|| +++|++|..+...++++++++|+||+||+++.++.+..|.. ..++++||||+|+.++++++++++.|
T Consensus 237 ~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i 315 (552)
T PRK08617 237 QAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVITIGYDPIEYEPRNWNS-EGDATIIHIDVLPAEIDNYYQPEREL 315 (552)
T ss_pred ccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEEecCcccccccccccc-CCCCcEEEEeCChHHhCCccCCCeEE
Confidence 99999999998 69999998888888999999999999999987665543332 23578999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc-cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
.+|++.+|++|++.++.... ......|.+.+.+.++...... .....++++..+++.|++.+++ |.+|+.|+|++.
T Consensus 316 ~~D~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~ii~~d~G~~~ 392 (552)
T PRK08617 316 IGDIAATLDLLAEKLDGLSL--SPQSLEILEELRAQLEELAERPARLEEGAVHPLRIIRALQDIVTD-DTTVTVDVGSHY 392 (552)
T ss_pred eCCHHHHHHHHHHhhhcccC--ccchHHHHHHHHHHHHHhhhhhcccCCCCcCHHHHHHHHHHhcCC-CcEEEeCCcHHH
Confidence 99999999999887764211 1123456665554433221111 1223569999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..+++....|++++.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|+++||+|+++||+||++|+
T Consensus 393 ~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV~NN~~~~ 472 (552)
T PRK08617 393 IWMARYFRSYEPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLNIVHIIWNDGHYN 472 (552)
T ss_pred HHHHHhccccCCCeEEecCccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHHhCCCeEEEEEECCccc
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
++++.|...|. +..+. ....+||.++|++||+++++|++++||+++|+++++.++|+||||++++++.
T Consensus 473 ~~~~~~~~~~~-~~~~~--------~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~liev~~~~~~~ 540 (552)
T PRK08617 473 MVEFQEEMKYG-RSSGV--------DFGPVDFVKYAESFGAKGLRVTSPDELEPVLREALATDGPVVIDIPVDYSDN 540 (552)
T ss_pred hHHHHHHhhcC-CcccC--------CCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCcEEEEEEeccccc
Confidence 99988766552 22222 1246899999999999999999999999999999999999999999998764
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-101 Score=864.97 Aligned_cols=529 Identities=30% Similarity=0.463 Sum_probs=463.1
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~ 80 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVT 80 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHH
Confidence 68999999999999999999999999999999997656999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++||.+++|||+|+|+++....+++.+|++||.++++++|||++++.+++++++.+++||+.|.++|+|||||+||.|
T Consensus 81 ~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 81 GVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCC
Q 040733 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGL 307 (643)
Q Consensus 230 v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gk 307 (643)
++.+++... + ++... .....++.+.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++|++||
T Consensus 161 v~~~~~~~~---~--~~~~~-~~~~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gk 234 (547)
T PRK08322 161 IAAEETDGK---P--LPRSY-SRRPYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGK 234 (547)
T ss_pred hhhCccccc---c--ccccC-CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEccccC
Confidence 987654311 1 11111 111235788899999999999999999999996 578999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCH
Q 040733 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADA 387 (643)
Q Consensus 308 g~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~ 387 (643)
|.||++||+++|++|..+...++++++++|+||+||+++.++.+..+. +.++.++||||+|+.++++++..++.+++|+
T Consensus 235 g~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~ 313 (547)
T PRK08322 235 GVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN-PNGDKKVIHINFLPAEVDPVYFPQVEVVGDI 313 (547)
T ss_pred CcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEECCCCccccccccC-CCCCCeEEEEeCCHHHcCCCcCCCeEEecCH
Confidence 999999999999999888888999999999999999999877654433 2346789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc-cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHH
Q 040733 388 KLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY-KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAI 466 (643)
Q Consensus 388 ~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~ 466 (643)
+.+|++|.+.++... .....|..++++...+..... .....++++.++++.|++.+++ +.+++.|+|++..|..
T Consensus 314 ~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~ii~~d~G~~~~~~~ 388 (547)
T PRK08322 314 ANSLWQLKERLADQP----HWDFPRFLKIREAIEAHLEEGADDDRFPMKPQRIVADLRKVMPD-DDIVILDNGAYKIWFA 388 (547)
T ss_pred HHHHHHHHHhccccc----cccHHHHHHHHHHHHHhhhhcccCCCCCcCHHHHHHHHHHHCCC-CeEEEECCcHHHHHHH
Confidence 999999988765321 111234333322211111010 1122369999999999999999 9999999999999999
Q ss_pred HhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 467 QFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 467 ~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
++++..+|++|+.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|+++|++|+++||+||++|||+++
T Consensus 389 ~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~ 468 (547)
T PRK08322 389 RNYRAYEPNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDNAYGMIRW 468 (547)
T ss_pred HhcccCCCCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHHhCCCeEEEEEeCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
.|...|... ... ....+||+++|++||+++++|++.+||+++|+++++.++|+||||++++++.
T Consensus 469 ~~~~~~~~~-~~~--------~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~v~~~~~ 532 (547)
T PRK08322 469 KQENMGFED-FGL--------DFGNPDFVKYAESYGAKGYRVESADDLLPTLEEALAQPGVHVIDCPVDYSEN 532 (547)
T ss_pred HHHhhcCCc-ccc--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCccC
Confidence 886654322 111 1245899999999999999999999999999999999999999999987654
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-100 Score=865.40 Aligned_cols=546 Identities=43% Similarity=0.708 Sum_probs=479.9
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
|+++|+|++.|+++||++|||+||+++++|+++|.+.+|++|.||||++|+|||+||+|++|+||||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~ 80 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVT 80 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHH
Confidence 58999999999999999999999999999999998767999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++|+.+++|||+|+|+.++...+.+.+|++||.++++++|||++++.+++++++.+++|++.|.++++|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 81 GIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred HHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCC-CCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 230 VQLELAVPNW-NQPCK--LPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 230 v~~~~~~~~~-~~~~~--~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
++.+++.... ..+.. .+.+.+ ...++.+.+++++++|.+||||+|++|.|+. ++.+++.+|+|++|+||++|+
T Consensus 161 v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 238 (586)
T PRK06276 161 VQEGELDLEKYPIPAKIDLPGYKP--TTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTL 238 (586)
T ss_pred HHhhhhccccccccccccccCCCC--CCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 9987764210 00000 011110 1124678899999999999999999999996 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||+||++||+++|.+|..+...++++++++|+||+||+++++..++.+..|.++.++||||.|+.++++++..++.|.
T Consensus 239 ~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~ 318 (586)
T PRK06276 239 MGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIV 318 (586)
T ss_pred CCCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhCCcCCCceEEe
Confidence 99999999999999999998998999999999999999999998888766667777899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCC----CeEEEeCCCh
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDE----ETIISTGVGQ 460 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~----d~iv~~d~G~ 460 (643)
+|++.+|++|++.+..... .....|.+++.+.+.++.........++++..+++.|++.+++. |.||+.|+|+
T Consensus 319 ~D~~~~L~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~ 395 (586)
T PRK06276 319 GDAKNVLRDLLAELMKKEI---KNKSEWLERVKKLKKESIPRMDFDDKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQ 395 (586)
T ss_pred cCHHHHHHHHHHhhhhhcc---cchHHHHHHHHHHHHhccccccCCCCCcCHHHHHHHHHHhccccCCCCCeEEEeCCcH
Confidence 9999999999987754211 12356888776655543221111235699999999999999862 6889999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|..++++.++|++|++++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++|+++|+++||+||++
T Consensus 396 ~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV~NN~~ 475 (586)
T PRK06276 396 NQMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPVVICIFDNRT 475 (586)
T ss_pred HHHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
|||+++.|+..|+.+.....+ ...+||.++|++||+++++|++++||+++|+++++.++|.||||++++.+ .
T Consensus 476 ~g~~~~~~~~~~~~~~~~~~~-------~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~-~ 547 (586)
T PRK06276 476 LGMVYQWQNLYYGKRQSEVHL-------GETPDFVKLAESYGVKADRVEKPDEIKEALKEAIKSGEPYLLDIIIDPAE-A 547 (586)
T ss_pred hHHHHHHHHHHhCCCcccccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecccc-c
Confidence 999998887766544332211 23589999999999999999999999999999999999999999999876 4
Q ss_pred ccccCCCc
Q 040733 621 VPMIPYDK 628 (643)
Q Consensus 621 ~p~~~~~~ 628 (643)
.|+.+++.
T Consensus 548 ~~~~~~~~ 555 (586)
T PRK06276 548 LPMVPPGG 555 (586)
T ss_pred CCcCCCCC
Confidence 45665553
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-100 Score=855.36 Aligned_cols=531 Identities=25% Similarity=0.371 Sum_probs=464.2
Q ss_pred CCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 66 PDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 66 ~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
|.+.|+++|+|++.|+++||++|||+||+++++|++++.+.+|++|.||||++|+|||+||+|+||+|+||++|+|||++
T Consensus 1 ~~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~ 80 (542)
T PRK05858 1 PAQTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVT 80 (542)
T ss_pred CcccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHH
Confidence 45678999999999999999999999999999999999776699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
|+++||++|+.+++|||+|+|+.+....+++.+|++||.++++++|||++++.+++++++.+++||+.|.++++|||||+
T Consensus 81 n~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 160 (542)
T PRK05858 81 NGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVD 160 (542)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 226 IPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
||.|++.+++.... .+...+.. ...+.++++.+++++++|.+||||+|++|+|++ ++.+++.+|||++|+||++|
T Consensus 161 iP~dv~~~~~~~~~-~~~~~~~~--~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt 237 (542)
T PRK05858 161 FPMDHAFSMADDDG-RPGALTEL--PAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMN 237 (542)
T ss_pred cChhhhhccccccc-cccccccC--CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEc
Confidence 99999987763210 11111111 111236788999999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||.||++||+++| ...+++++++|+||+||+++++..+.. .|.+++++||||+|+.+++++++.++.+
T Consensus 238 ~~~kg~~~~~hpl~~~-------~~~~~~l~~aD~vl~vG~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i 308 (542)
T PRK05858 238 GMGRGVVPADHPLAFS-------RARGKALGEADVVLVVGVPMDFRLGFG--VFGGTAQLVHVDDAPPQRAHHRPVAAGL 308 (542)
T ss_pred CCcCCCCCCCCchhhh-------HHHHHHHHhCCEEEEECCCCccccccc--ccCCCCEEEEECCCHHHhcCCCCCceEE
Confidence 9999999999999985 345788999999999999987654422 2444679999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCC
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEEIPPQYAIQILNELTDDEETIISTGVG 459 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G 459 (643)
.+|++.+|++|.+.+.... ....|.+++++.++++.. ......+++++.++++.|++.+++ |.+|+.|+|
T Consensus 309 ~~d~~~~l~~L~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~ivv~d~g 382 (542)
T PRK05858 309 YGDLSAILSALAGAGGDRT-----DHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLLDR-DAIVIGDGG 382 (542)
T ss_pred eCCHHHHHHHHHHhccccc-----CcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCC-CeEEEECCc
Confidence 9999999999988765421 124577666554433221 111223569999999999999998 999999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
++..|..++++...|++|+.++++|+|||++|+|||++++.|+|+||+++|||||+|++|||+|++||++|+++||+||+
T Consensus 383 ~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~ivV~NN~ 462 (542)
T PRK05858 383 DFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNNG 462 (542)
T ss_pred HHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 540 ~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
+|+++++.+...|+.+.... ....+||.++|++||+++.+|++++||+++|+++++.++|+||||++++++
T Consensus 463 ~y~~~~~~~~~~~~~~~~~~--------~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~~~~~~- 533 (542)
T PRK05858 463 IWGLEKHPMEALYGYDVAAD--------LRPGTRYDEVVRALGGHGELVTVPAELGPALERAFASGVPYLVNVLTDPSV- 533 (542)
T ss_pred chhhHHHHHHHhcCCccccc--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEECCCc-
Confidence 99999988776664322111 135689999999999999999999999999999999999999999999875
Q ss_pred cccc
Q 040733 620 VVPM 623 (643)
Q Consensus 620 ~~p~ 623 (643)
..|+
T Consensus 534 ~~~~ 537 (542)
T PRK05858 534 AYPR 537 (542)
T ss_pred CCCC
Confidence 3443
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-100 Score=859.84 Aligned_cols=529 Identities=28% Similarity=0.451 Sum_probs=461.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 82 (576)
T PRK08611 3 KIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIH 82 (576)
T ss_pred CCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHH
Confidence 47999999999999999999999999999999999753 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++||.+++|||+|+|++++...+++.+|++||.++++++|||++++.+++++++.+++|++.|.+++ |||||+|
T Consensus 83 ~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-GPV~l~i 161 (576)
T PRK08611 83 LLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK-GVAVLTI 161 (576)
T ss_pred HHHHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCC-CCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975 9999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|.|++.+++...... ..+.+... ...++++.+++++++|++||||+|++|+|+.++.+++.+|+|++|+||++|++|
T Consensus 162 P~Dv~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~~~~PV~tt~~g 238 (576)
T PRK08611 162 PDDLPAQKIKDTTNK--TVDTFRPT-VPSPKPKDIKKAAKLINKAKKPVILAGLGAKHAKEELLAFAEKAKIPIIHTLPA 238 (576)
T ss_pred Chhhhhccccccccc--ccccCCCC-CCCCCHHHHHHHHHHHHcCCCcEEEECcCcchHHHHHHHHHHHhCCCEEEcccc
Confidence 999998776321100 01111111 123577889999999999999999999999888899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||++|++||+++|++|..++..++++++++|+||+||++++... .+..++++||||+|+.+++++++.++.|++|
T Consensus 239 kg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG~~~~~~~-----~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D 313 (576)
T PRK08611 239 KGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYVD-----YLPKKAKAIQIDTDPANIGKRYPVNVGLVGD 313 (576)
T ss_pred ccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeCCCCCccc-----cCCCCCcEEEEeCCHHHcCCccCCCeeEecC
Confidence 99999999999999999898888999999999999999975321 1233578999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHh----CCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK----YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++.+|++|++.+.... ...|.+.+...+.+ ........+.++++..+++.|++.+++ +.|++.|+|++.
T Consensus 314 ~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~-~~ivv~d~G~~~ 386 (576)
T PRK08611 314 AKKALHQLTENIKHVE------DRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIADD-DAVLSVDVGTVT 386 (576)
T ss_pred HHHHHHHHHHhccccc------chHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhcCC-CeEEEEcChHHH
Confidence 9999999988775321 12455444322211 111111223569999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..++++...+++|+.+.++|+||||+|+|||++++.|+++||+|+|||||+|++|||+|++||++|+++||+||++||
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~iivV~NN~~~g 466 (576)
T PRK08611 387 VWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNNQQLA 466 (576)
T ss_pred HHHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHHhCCCeEEEEEeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccc
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVP 622 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p 622 (643)
|+++.|...+.. .... ....+||.++|++||+++++|++++||+++|+++++.++|+||||.+++.+...|
T Consensus 467 ~i~~~q~~~~~~-~~~~--------~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~vd~~~~~~~ 537 (576)
T PRK08611 467 FIKYEQQAAGEL-EYAI--------DLSDMDYAKFAEACGGKGYRVEKAEELDPAFEEALAQDKPVIIDVYVDPNAAPLP 537 (576)
T ss_pred HHHHHHHHhcCC-cccc--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCcccCCC
Confidence 998877643221 1111 1346899999999999999999999999999999999999999999998775444
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-99 Score=859.03 Aligned_cols=530 Identities=29% Similarity=0.439 Sum_probs=459.7
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
|.++++++|++.|+++||++|||+||+++++|+++|.++ +|++|.+|||++|+|||+||||+||+|+||++|+|||++|
T Consensus 1 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n 80 (574)
T PRK09124 1 MKQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLH 80 (574)
T ss_pred CCccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHH
Confidence 357999999999999999999999999999999999876 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+|+||++....+++.+|++||.++++++|||++++.+++++++.+++|++.|.++ +|||||+|
T Consensus 81 ~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~-~gPV~l~i 159 (574)
T PRK09124 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILN-RGVAVVVL 159 (574)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 59999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|.|++.+++.... .....+... ....++++.+++++++|.+||||+||+|+|+.++.+++.+|+|++|+||++|++|
T Consensus 160 P~Dv~~~~~~~~~-~~~~~~~~~--~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~~a~~~l~~lae~l~~PV~tt~~g 236 (574)
T PRK09124 160 PGDVALKPAPERA-TPHWYHAPQ--PVVTPAEEELRKLAALLNGSSNITLLCGSGCAGAHDELVALAETLKAPIVHALRG 236 (574)
T ss_pred ChhhhhCcccccc-ccccccCCC--CCCCCCHHHHHHHHHHHHcCCCCEEEECcChHhHHHHHHHHHHHhCCceEEcccc
Confidence 9999987763211 000011111 0122567889999999999999999999999878899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||+||++||+++|++|..+...++.+++++|+||+||++++... .+.+++++||||+|+.+++++++.++.|++|
T Consensus 237 kg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~-----~~~~~~~ii~id~d~~~~~~~~~~~~~i~~D 311 (574)
T PRK09124 237 KEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYRQ-----FYPTDAKIIQIDINPGSLGRRSPVDLGLVGD 311 (574)
T ss_pred cccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEECCCCCccc-----ccCCCCcEEEeeCCHHHhCCCCCCCeEEEcc
Confidence 99999999999999999898888899999999999999985321 1334578999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHH----HHHhCCC--cccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHE----QKKKYPF--SYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~----~~~~~~~--~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
++.+|++|++.+.... ...|.+.+.+ .+..... .......++++..+++.|++.+++ +.+++.|+|+
T Consensus 312 ~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~ivv~d~g~ 384 (574)
T PRK09124 312 VKATLAALLPLLEEKT------DRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFAAD-DAIFTCDVGT 384 (574)
T ss_pred HHHHHHHHHHhhhccC------ChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcCC-CcEEEEcCCH
Confidence 9999999988765321 1235443322 1111110 001123569999999999999999 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|..+++..+++++|+.++++|+|||++|+|||+++++|+++||+|+|||||+|++|||+|++||++|+++||+||++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 464 (574)
T PRK09124 385 PTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIVVFNNSV 464 (574)
T ss_pred HHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHHhCCCeEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
||++++.|... +....++ +...+||.++|++||+++++|++++||+++|+++++.++|+||||.+++++..
T Consensus 465 ~g~i~~~~~~~-~~~~~~~--------~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~i~~~~~~ 535 (574)
T PRK09124 465 LGFVAMEMKAG-GYLTDGT--------DLHNPDFAAIAEACGITGIRVEKASELDGALQRAFAHDGPALVDVVTAKQELA 535 (574)
T ss_pred cccHHHHHHhc-CCccccC--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCcccC
Confidence 99998766532 1111111 13458999999999999999999999999999999999999999999988765
Q ss_pred cc
Q 040733 621 VP 622 (643)
Q Consensus 621 ~p 622 (643)
.|
T Consensus 536 ~~ 537 (574)
T PRK09124 536 MP 537 (574)
T ss_pred CC
Confidence 43
|
|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-99 Score=850.00 Aligned_cols=532 Identities=26% Similarity=0.358 Sum_probs=458.0
Q ss_pred CCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh--CCcEEEEEccchh
Q 040733 66 PDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS--GTPGVCLVSSGPG 143 (643)
Q Consensus 66 ~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s--g~~gv~~~t~GpG 143 (643)
+.+.++++|+|++.|+++||++|||+|| ++|+++|.+.+|++|.||||++|+||||||+|+| |+++||++|+|||
T Consensus 16 ~~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG 92 (565)
T PRK06154 16 EAKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPG 92 (565)
T ss_pred CcCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHhcCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCcc
Confidence 4556899999999999999999999995 5999999876699999999999999999999999 4999999999999
Q ss_pred hHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEE
Q 040733 144 VTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVL 223 (643)
Q Consensus 144 ~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~ 223 (643)
++|+++||++||.+++|||+|+|+.++...+.+ +++|+.++++++|||++++.+++++++++++||+.|+++|+||||
T Consensus 93 ~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~ 170 (565)
T PRK06154 93 AENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA--PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVV 170 (565)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeCCCCcccccCC--CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 999999999999999999999999998766544 347889999999999999999999999999999999999999999
Q ss_pred EEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 224 IDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 224 i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
|+||.|++.+++... +... .+. . .....++++.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||+
T Consensus 171 l~iP~Dv~~~~~~~~-~~~~-~~~-~-~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~PV~ 246 (565)
T PRK06154 171 LELPVDVLAEELDEL-PLDH-RPS-R-RSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELAELLEIPVM 246 (565)
T ss_pred EecchHHhhhhcccc-cccc-cCC-C-CCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEE
Confidence 999999998776321 0000 011 0 111236788999999999999999999999997 678999999999999999
Q ss_pred ecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCe
Q 040733 302 CTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDV 381 (643)
Q Consensus 302 tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~ 381 (643)
+|++|||+||++||+++|+.|..+...+++++++||+||+||++++++..+. .+.+++++||||+|+.+++++++.++
T Consensus 247 tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~lG~~l~~~~~~~--~~~~~~~vI~id~d~~~~~~~~~~~~ 324 (565)
T PRK06154 247 TTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRSYYGL--PMPEGKTIIHSTLDDADLNKDYPIDH 324 (565)
T ss_pred ECCCcccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEECCCCcccccCc--cCCCCCeEEEEECCHHHhccccCCCe
Confidence 9999999999999999999888788888999999999999999998754322 25567899999999999999999999
Q ss_pred eEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCCCCHHHHHHHHHhcCCCCCeEEEeC
Q 040733 382 SICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEEIPPQYAIQILNELTDDEETIISTG 457 (643)
Q Consensus 382 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d 457 (643)
.|.+|++.+|++|++.+..+..........|.+++...+.++.. .......++++..+++.|++.++++|.|++.|
T Consensus 325 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~d~iv~~D 404 (565)
T PRK06154 325 GLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAVDIKTVIITHD 404 (565)
T ss_pred eEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHhcCCCCEEEEEC
Confidence 99999999999999888753211011234687666554433211 11122357999999999999997438999999
Q ss_pred CChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEe
Q 040733 458 VGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537 (643)
Q Consensus 458 ~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~N 537 (643)
+|++..|..++++...|++|++++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++|||+|+++||+|
T Consensus 405 ~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~vV~N 484 (565)
T PRK06154 405 AGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVRERIPILTILLN 484 (565)
T ss_pred CcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh---CCCcEEEEEEe
Q 040733 538 NQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE---TPGPYLLDVMV 614 (643)
Q Consensus 538 N~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~---~~gp~lIeV~v 614 (643)
|++||++++.+...+ .+.... ...+||.++|++||+++++|++.+||+++|+++++ .++|+||||++
T Consensus 485 N~~yg~~~~~~~~~~-~~~~~~---------~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev~v 554 (565)
T PRK06154 485 NFSMGGYDKVMPVST-TKYRAT---------DISGDYAAIARALGGYGERVEDPEMLVPALLRALRKVKEGTPALLEVIT 554 (565)
T ss_pred CCccceeehhhhhhc-Cccccc---------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEEEe
Confidence 999999987765432 111111 13479999999999999999999999999999996 68999999999
Q ss_pred CCCC
Q 040733 615 SYQE 618 (643)
Q Consensus 615 ~~~~ 618 (643)
++++
T Consensus 555 ~~~~ 558 (565)
T PRK06154 555 SEET 558 (565)
T ss_pred ChHH
Confidence 8865
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-99 Score=852.98 Aligned_cols=525 Identities=27% Similarity=0.400 Sum_probs=459.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
-|+++++|++.|+++||++|||+||+++++|+++|.++ +|++|.||||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~ 81 (578)
T PRK06546 2 AKTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHL 81 (578)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHH
Confidence 37999999999999999999999999999999999887 49999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+|+|+++....+++.+|++||.++++++|||+++|.+++++++.+++|++.|.+ ++|||||+||
T Consensus 82 ~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~lP 160 (578)
T PRK06546 82 INGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVA-GGGVSVVTLP 160 (578)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCCCccccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 5699999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGL 307 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gk 307 (643)
.|++.+++..... ....+... ....++++.+++++++|++||||+|++|+|++++.+++.+|+|++|+||++|++||
T Consensus 161 ~Dv~~~~~~~~~~-~~~~~~~~--~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~~a~~~l~~lae~~g~Pv~~t~~gk 237 (578)
T PRK06546 161 GDIADEPAPEGFA-PSVISPRR--PTVVPDPAEVRALADAINEAKKVTLFAGAGVRGAHAEVLALAEKIKAPVGHSLRGK 237 (578)
T ss_pred hhhhhcccccccc-ccccccCC--CCCCCCHHHHHHHHHHHHcCCCcEEEECcchHHHHHHHHHHHHHhCcceEECcccc
Confidence 9999876642110 00011111 01236788999999999999999999999999888999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCH
Q 040733 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADA 387 (643)
Q Consensus 308 g~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~ 387 (643)
|+||++||+++|+.|..++..+++++++|||||+||++++. ..|.++.++||||.|+.++++++..++.|.+|+
T Consensus 238 g~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~------~~~~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~ 311 (578)
T PRK06546 238 EWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDFPY------DQFLPDVRTAQVDIDPEHLGRRTRVDLAVHGDV 311 (578)
T ss_pred cCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCh------hhcCCCCcEEEEeCCHHHhCCCCCCCeEEEcCH
Confidence 99999999999999999999999999999999999999752 234556789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhC----CCcc---cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 388 KLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKY----PFSY---KTFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 388 ~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~---~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
+.+|++|++.|.... ...|.+++...+.++ .... .....++++..+++.|++.+++ +.|++.|.|+
T Consensus 312 ~~~l~~L~~~L~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~ivv~d~G~ 384 (578)
T PRK06546 312 AETIRALLPLVKEKT------DRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELAAD-DAVFTVDTGM 384 (578)
T ss_pred HHHHHHHHHhhcccC------ChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhccC-CcEEEECCcH
Confidence 999999998886421 124554332221111 0000 1123469999999999999998 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+..|..+++...++++++.++++|+|||++|+|||+++++|+++||+|+|||||+|+++||+|+++|++|+++||+||++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~~vV~NN~~ 464 (578)
T PRK06546 385 CNVWAARYITPNGRRRVIGSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVVVFNNST 464 (578)
T ss_pred HHHHHHHhcCCCCCceEEccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHHhCCCeEEEEEECCc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
||++++.|...+. +.... ....+||.++|++||+++.+|++++||+++|+++++.+||+||||.+++.+.
T Consensus 465 ~g~i~~~q~~~~~-~~~~~--------~~~~~df~~lA~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~~~~~~~ 534 (578)
T PRK06546 465 LGMVKLEMLVDGL-PDFGT--------DHPPVDYAAIAAALGIHAVRVEDPKDVRGALREAFAHPGPALVDVVTDPNAL 534 (578)
T ss_pred cccHHHHHHhcCC-Ccccc--------cCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcc
Confidence 9999876653221 11111 1356899999999999999999999999999999999999999999998763
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-99 Score=850.61 Aligned_cols=519 Identities=28% Similarity=0.464 Sum_probs=449.9
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
++++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~ 81 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLN 81 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHH
Confidence 58999999999999999999999999999999998767999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++|+.+++|||+|+||++....+++.+|++||.++++++|||++++.+++++++.+++||+.|+++ +|||||+||.|
T Consensus 82 ~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~D 160 (549)
T PRK06457 82 GLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISK-RGVAHINLPVD 160 (549)
T ss_pred HHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 59999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCC
Q 040733 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGL 309 (643)
Q Consensus 230 v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~ 309 (643)
++.++... ... . .. ..+.......+++++++|++||||+|++|+|+.++.+++++|||++|+||++|++|||.
T Consensus 161 v~~~~~~~--~~~-~---~~-~~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~~a~~~l~~lAe~~~~PV~tt~~gkg~ 233 (549)
T PRK06457 161 ILRKSSEY--KGS-K---NT-EVGKVKYSIDFSRAKELIKESEKPVLLIGGGTRGLGKEINRFAEKIGAPIIYTLNGKGI 233 (549)
T ss_pred Hhhccccc--ccc-c---cc-CCCCCCCHHHHHHHHHHHHcCCCcEEEECcchhhHHHHHHHHHHHHCCCEEEccccccc
Confidence 98765421 110 0 00 00111123579999999999999999999999888899999999999999999999999
Q ss_pred CCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHH
Q 040733 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKL 389 (643)
Q Consensus 310 ~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~ 389 (643)
||++||+++|++|..++..++++++++|+||++|+++++.. .+.++.++||||.|+.+++++++.++.|++|++.
T Consensus 234 ~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~-----~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~ 308 (549)
T PRK06457 234 LPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVN-----FLNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAE 308 (549)
T ss_pred CCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCChhh-----cCCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHH
Confidence 99999999999998899889999999999999999985321 1233678999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCC----ChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHH
Q 040733 390 VFNRMNMILESKGVGFMF----DFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465 (643)
Q Consensus 390 ~L~~L~~~l~~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~ 465 (643)
+|+.+.. ........ ....|.+++.+... ....++++.++++.|++.+++ +.+++.|+|++..|.
T Consensus 309 ~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~l~~~l~~-~~iiv~d~g~~~~~~ 377 (549)
T PRK06457 309 FLNIDIE---EKSDKFYEELKGKKEDWLDSISKQEN-------SLDKPMKPQRVAYIVSQKCKK-DAVIVTDTGNVTMWT 377 (549)
T ss_pred HHHHHhh---cccchhHHHHHHHHHHHHHHHHHhhc-------CCCCCcCHHHHHHHHHhhCCC-CeEEEECCcHHHHHH
Confidence 9954322 11100000 11234433332211 123469999999999999999 899999999999999
Q ss_pred HHhccccCCCeEEecCCCcccccchHHHHHHHHhCC-CCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 466 IQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANP-GAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p-~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
.+++...++++|+.++++|+|||++|+|||+++++| +|+||+|+|||||+|++|||+|+++|++|+++||+||++||++
T Consensus 378 ~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i 457 (549)
T PRK06457 378 ARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNSKLGMI 457 (549)
T ss_pred HHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHHHCCCeEEEEEECCccchH
Confidence 999998889999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcc
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVV 621 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~ 621 (643)
++.|...+ ....+. ....+||.++|++||+++++|++++||+++|+++++.++|+||||++++++...
T Consensus 458 ~~~q~~~~-~~~~~~--------~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~~~~ 525 (549)
T PRK06457 458 KFEQEVMG-YPEWGV--------DLYNPDFTKIAESIGFKGFRLEEPKEAEEIIEEFLNTKGPAVLDAIVDPNERPM 525 (549)
T ss_pred HHHHHHhc-CCcccc--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCccccCC
Confidence 98775432 111111 134689999999999999999999999999999999999999999999877543
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-99 Score=850.07 Aligned_cols=528 Identities=30% Similarity=0.493 Sum_probs=464.8
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+.++++|+|++.|+++||++|||+||+++++|+++|.+++ |++|.+|||++|+|||+||||++|||+||++|+|||++|
T Consensus 6 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 85 (557)
T PRK08199 6 RARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATN 85 (557)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHH
Confidence 4579999999999999999999999999999999998876 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++||.+++|||+|+||+++...+++.+|++||..+++++|||++++.+++++++.+++||+.|.++++|||||+|
T Consensus 86 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~i 165 (557)
T PRK08199 86 ASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLAL 165 (557)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++... . .+.+. .....++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 166 P~dl~~~~~~~~--~---~~~~~-~~~~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~ 239 (557)
T PRK08199 166 PEDVLSETAEVP--D---APPYR-RVAAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAF 239 (557)
T ss_pred CHhHhhCccccc--c---cCCcC-CCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcC
Confidence 999988765211 0 01111 111236788899999999999999999999986 578999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcccccc---CCceEEEEcCCcccccCCCCCCe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA---TRAKIVHIDIDSNEIGKVKLPDV 381 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~---~~~~iI~Id~d~~~i~~~~~~~~ 381 (643)
+|||++|++||+++|.+|..++..++++++++|+||+||++++++.+..+..+. ++.++||||.|+.++++++..++
T Consensus 240 ~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~ 319 (557)
T PRK08199 240 RRQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDL 319 (557)
T ss_pred CcCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCe
Confidence 999999999999999999888888899999999999999999888775443332 46789999999999999999999
Q ss_pred eEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC--cccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCC
Q 040733 382 SICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF--SYKTFGEEIPPQYAIQILNELTDDEETIISTGVG 459 (643)
Q Consensus 382 ~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G 459 (643)
.|++|++.+|++|++.+.. ....|.+.+...+..+.. .......++++..+++.|++.+++ +.+|+.|+|
T Consensus 320 ~i~~D~~~~l~~L~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ii~~d~g 391 (557)
T PRK08199 320 AIVADPAAFAAALAALEPP-------ASPAWAEWTAAAHADYLAWSAPLPGPGAVQLGEVMAWLRERLPA-DAIITNGAG 391 (557)
T ss_pred EEecCHHHHHHHHHhcccc-------cchhHHHHHHHHHHHHHhhccccCCCCCcCHHHHHHHHHHhCCC-CeEEEECCh
Confidence 9999999999999875431 113465544433322211 001123469999999999999999 999999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
++..|..++++..+++.++.++ +|+|||++|+|||+++++|+++||+|+|||||+|+++||+|++++++|+++||+||+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~-~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~~~l~i~~vv~nN~ 470 (557)
T PRK08199 392 NYATWLHRFFRFRRYRTQLAPT-SGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYGLPIIVIVVNNG 470 (557)
T ss_pred HHHHHHHHhcCcCCCCeEECCC-CccccchHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCC
Confidence 9999999999998888888654 599999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 540 ~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
+|++++..|+..|.++..... ...+||.++|++||+++++|++++||+++|+++++.+||+||||++++++
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~--------~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~li~v~~~~~~ 541 (557)
T PRK08199 471 MYGTIRMHQEREYPGRVSGTD--------LTNPDFAALARAYGGHGETVERTEDFAPAFERALASGKPALIEIRIDPEA 541 (557)
T ss_pred cchHHHHHHHHhcCCcccccc--------CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCHHH
Confidence 999999888776654433322 24589999999999999999999999999999999999999999998765
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-98 Score=851.33 Aligned_cols=536 Identities=25% Similarity=0.395 Sum_probs=468.4
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+.|+++++|++.|+++||++|||+||+.+++|+++|.+.+|++|.||||++|+|||+||+|++|||+||++|+|||++|+
T Consensus 4 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 83 (588)
T PRK07525 4 MKMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNF 83 (588)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 45899999999999999999999999999999999976569999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+|+|+.+....+++.+|++||.++++++|||++++.+++++++.+++|++.|+++ +|||||+||
T Consensus 84 ~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~-~GPV~i~iP 162 (588)
T PRK07525 84 VTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRE-SGPAQINIP 162 (588)
T ss_pred HHHHHHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcC-CCCEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 599999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.++++... +...+. ....+++..+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|++
T Consensus 163 ~Dv~~~~~~~~~--~~~~~~----~~~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~ 236 (588)
T PRK07525 163 RDYFYGVIDVEI--PQPVRL----ERGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYL 236 (588)
T ss_pred hhHhhhhccccc--CccccC----CCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeEEccc
Confidence 999987763211 111111 11235778899999999999999999999997 6789999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccC---ccccccCCceEEEEcCCcccccCCCCCCee
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTS---KLEDFATRAKIVHIDIDSNEIGKVKLPDVS 382 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~---~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~ 382 (643)
|||+||++||+++|.+|..++..+++++++||+||+||++++++.+. .+..|.+++++||||.|+.+++++++.++.
T Consensus 237 gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~ 316 (588)
T PRK07525 237 HNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVG 316 (588)
T ss_pred ccccCCCCCccccccCcccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCce
Confidence 99999999999999999888888899999999999999999876553 223355678999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHhhcC-CC-C--------CCChhHHHHHHHHHHHhCCC---cc-----cCCCCCCCHHHHHHHHH
Q 040733 383 ICADAKLVFNRMNMILESKG-VG-F--------MFDFSAWREELHEQKKKYPF---SY-----KTFGEEIPPQYAIQILN 444 (643)
Q Consensus 383 i~~D~~~~L~~L~~~l~~~~-~~-~--------~~~~~~w~~~~~~~~~~~~~---~~-----~~~~~~i~~~~~~~~L~ 444 (643)
|++|++.+|++|++.+.... .. . ......|.+++.+.+..... .. ....+++++.++++.|+
T Consensus 317 i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 396 (588)
T PRK07525 317 ICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALREIQ 396 (588)
T ss_pred EecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCcCHHHHHHHHH
Confidence 99999999999998886421 00 0 01123566555444322210 00 01124699999999999
Q ss_pred hcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHH
Q 040733 445 ELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAI 524 (643)
Q Consensus 445 ~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta 524 (643)
+.+++ |.||+.|+|++..|..++++..+|++|++++++|+|||++|+|||++++.|+|+||+|+|||||+|++|||+|+
T Consensus 397 ~~l~~-d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~~~~el~Ta 475 (588)
T PRK07525 397 KALPE-DAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISMNEVMTA 475 (588)
T ss_pred HhCCC-CcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhccHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC
Q 040733 525 KAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET 604 (643)
Q Consensus 525 ~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~ 604 (643)
++|++|+++||+||++|+++++.|...|+.+..+..+ ...+||.++|++||+++++|++.+||+++|+++++.
T Consensus 476 ~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~-------~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~ 548 (588)
T PRK07525 476 VRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTEL-------DNNVSYAGIAEAMGAEGVVVDTQEELGPALKRAIDA 548 (588)
T ss_pred HHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccC-------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhc
Confidence 9999999999999999999998887766644333221 235899999999999999999999999999999975
Q ss_pred ---CCcEEEEEEeCCCC
Q 040733 605 ---PGPYLLDVMVSYQE 618 (643)
Q Consensus 605 ---~gp~lIeV~v~~~~ 618 (643)
+||+||||+++++.
T Consensus 549 ~~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 549 QNEGKTTVIEIMCNQEL 565 (588)
T ss_pred CCCCCcEEEEEEecccc
Confidence 59999999998654
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-98 Score=845.94 Aligned_cols=527 Identities=25% Similarity=0.368 Sum_probs=455.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+||||||+|+|||||||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 57999999999999999999999999999999764 4999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++||.+++|||+|+|+.++...+.+.+|++||..+++++|||++++.+++++++.+++|++.|.+ ++|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~D 159 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVD 159 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 669999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCC
Q 040733 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGL 309 (643)
Q Consensus 230 v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~ 309 (643)
++.+++......... +.+.......++++.+++++++|++||||+|++|+|++++.+++.+|+|++|+||++|++|||.
T Consensus 160 v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~PV~tt~~gkg~ 238 (575)
T TIGR02720 160 FGWQEIPDNDYYASS-VSYQTPLLPAPDVEAVTRAVQTLKAAERPVIYYGIGARKAGEELEALSEKLKIPLISTGLAKGI 238 (575)
T ss_pred hhhcccccccccccc-ccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchhhHHHHHHHHHHHhCCCEEEccccccc
Confidence 987765321000000 0001011124688899999999999999999999999988899999999999999999999999
Q ss_pred CCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHH
Q 040733 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKL 389 (643)
Q Consensus 310 ~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~ 389 (643)
||++||+++|++|..++..++++++++|+||++|++++...+. ..+....++||||+|+.++++++..++.|.+|++.
T Consensus 239 ~~~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~ 316 (575)
T TIGR02720 239 IEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFAEVS--KAFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKK 316 (575)
T ss_pred CCCCCcccccCCcCCCcHHHHHHHHhCCEEEEeCCCCCccccc--cccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHH
Confidence 9999999999999888888899999999999999998643321 12333445699999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHHHHHHH----HHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHH
Q 040733 390 VFNRMNMILESKGVGFMFDFSAWREELHE----QKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWA 465 (643)
Q Consensus 390 ~L~~L~~~l~~~~~~~~~~~~~w~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~ 465 (643)
+|++|++.++... ...|.++... ..+...........++++..+++.|++.+++ |.|++.|+|++..|.
T Consensus 317 ~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-d~ii~~D~g~~~~~~ 389 (575)
T TIGR02720 317 ALAAILAQVEPRE------STPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIAED-DAIYSIDVGDININS 389 (575)
T ss_pred HHHHHHHhccccC------ChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhCCC-CcEEEeCCcHHHHHH
Confidence 9999998775421 1234333221 1111110001123579999999999999999 999999999999999
Q ss_pred HHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 466 IQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
.++++.+.+++|++++++|+|||++|+|||+++++|+|+||+|+|||||+|++|||+|++||++|+++||+||++||+++
T Consensus 390 ~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~ 469 (575)
T TIGR02720 390 NRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSNCTYGFIK 469 (575)
T ss_pred HHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH--hCCCcEEEEEEeCCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML--ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al--~~~gp~lIeV~v~~~~ 618 (643)
+.|... ..++.+. ....+||+++|++||+++++|++.+||+++|++++ +.++|+||||++++++
T Consensus 470 ~~~~~~-~~~~~~~--------~~~~~df~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~~~p~liev~i~~~~ 535 (575)
T TIGR02720 470 DEQEDT-NQPLIGV--------DFNDADFAKIAEGVGAVGFRVNKIEQLPAVFEQAKAIKQGKPVLIDAKITGDR 535 (575)
T ss_pred HHHHHh-CCCcccc--------cCCCCCHHHHHHHCCCEEEEeCCHHHHHHHHHHHHhhCCCCcEEEEEEeCCCC
Confidence 877432 2222111 13468999999999999999999999999999999 7899999999999875
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-98 Score=838.34 Aligned_cols=523 Identities=28% Similarity=0.460 Sum_probs=452.3
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
.+++|+|++.|+++||++|||+||+.+++|+++|.+++|++|.+|||++|+|||+||||+|||||||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~ 81 (535)
T PRK07524 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIAT 81 (535)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHH
Confidence 48999999999999999999999999999999998767999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCC--CCCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTD--AFQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
||++||.+++|||+|+|+.++...+++ .+|+ .||.++++++|||++++.+++++++.+++|++.|+++|+|||||+|
T Consensus 82 gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (535)
T PRK07524 82 AMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEI 161 (535)
T ss_pred HHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 999999999999999999998887764 6677 5999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|.|++.+++...... .+ .. .....++++.+++++++|.+||||+|++|.|+.++.+++.+|+|++++||++|++|
T Consensus 162 P~Dv~~~~~~~~~~~---~~-~~-~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~pV~tt~~~ 236 (535)
T PRK07524 162 PLDVLAAPADHLLPA---PP-TR-PARPGPAPAALAQAAERLAAARRPLILAGGGALAAAAALRALAERLDAPVALTINA 236 (535)
T ss_pred CHhHHhcccccccCc---cc-cc-CCCCCCCHHHHHHHHHHHHhCCCcEEEECCChHHHHHHHHHHHHHHCCCEEEcccc
Confidence 999998876421110 01 00 11123678899999999999999999999999988899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCc--cccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSK--LEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~--~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
||.||++||+++|..| ++..++++++++|+||+||+++++..+.. ...|.++.++||||+|+.+++++++.++.|.
T Consensus 237 kg~~p~~hp~~~G~~~--~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~ 314 (535)
T PRK07524 237 KGLLPAGHPLLLGASQ--SLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALV 314 (535)
T ss_pred cccCCCCChhhccCCC--CCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEe
Confidence 9999999999999775 56788999999999999999987554321 1235556789999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHH-HHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHH
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWR-EELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQM 463 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~ 463 (643)
+|++.+|++|++.++.+. ....|. +++...+++..... ....+++..+++.|++.++ +.+++.|.|++.+
T Consensus 315 ~D~~~~L~~L~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~--~~~i~~d~g~~~~ 385 (535)
T PRK07524 315 GDARAALEALLARLPGQA-----AAADWGAARVAALRQALRAEW--DPLTAAQVALLDTILAALP--DAIFVGDSTQPVY 385 (535)
T ss_pred cCHHHHHHHHHHhccccC-----CchhhHHHHHHHHHHhchhhc--cccccCHHHHHHHHHHhCC--CCEEEeCCcHHHH
Confidence 999999999998876432 122464 23323333221111 1234677889999999998 4667789999999
Q ss_pred HHHHhccccCCCeEEe-cCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 464 WAIQFYMYKRARQLLT-SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 464 ~~~~~~~~~~p~~~~~-~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
|..++++.++|++|+. ++++|+|||++|+|||+++|+|+++||+++|||||+|++|||+|+++||+|+++||+||++||
T Consensus 386 ~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~~~lpi~~vV~NN~~~g 465 (535)
T PRK07524 386 AGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVLLWNNDGYG 465 (535)
T ss_pred HHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEECCchH
Confidence 9999999999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCC
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~ 617 (643)
++++.|..... ...+. +...+||.++|++||+++++|++++||+++|+++++.+||+||||++++-
T Consensus 466 ~i~~~~~~~~~-~~~~~--------~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~ 531 (535)
T PRK07524 466 EIRRYMVARDI-EPVGV--------DPYTPDFIALARAFGCAAERVADLEQLQAALRAAFARPGPTLIEVDQACW 531 (535)
T ss_pred HHHHHHHHhcC-Ccccc--------CCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEECCcc
Confidence 99987764321 11111 23468999999999999999999999999999999999999999999763
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-98 Score=839.54 Aligned_cols=529 Identities=26% Similarity=0.385 Sum_probs=459.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++++|++.|+++||++|||+||+++++|++++.+++ |++|.+|||++|+|||+||||+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 468999999999999999999999999999999997654 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCC--CCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDA--FQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~--~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
++||++||.+++|||+|+|++++...+++. +|+ +||.++++++|||++++.+++++++.+++||+.|.++++|||||
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSV 161 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEE
Confidence 999999999999999999999988877763 555 69999999999999999999999999999999999999999999
Q ss_pred EcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecC
Q 040733 225 DIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 225 ~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~ 304 (643)
+||.|++.+++..... ....+ . . ...++++.+++++++|.+||||+|++|.|+.++.+++.+|+| +|+||++|+
T Consensus 162 ~iP~dv~~~~~~~~~~-~~~~~--~-~-~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~a~~~l~~lae-~~~pv~~t~ 235 (544)
T PRK07064 162 EIPIDIQAAEIELPDD-LAPVH--V-A-VPEPDAAAVAELAERLAAARRPLLWLGGGARHAGAEVKRLVD-LGFGVVTST 235 (544)
T ss_pred EeCHhHhhcccccccc-ccccc--C-C-CCCCCHHHHHHHHHHHHhCCCCEEEECCChHhHHHHHHHHHH-cCCCEEEcc
Confidence 9999998877632110 00011 1 1 123678899999999999999999999999888889999999 999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||+||++||+++|++| ++..+++++++|||||+||++++++.+..|. +....++||||+|+.+++++++.++.+.
T Consensus 236 ~~kg~~~~~hp~~~G~~~--~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~ 312 (544)
T PRK07064 236 QGRGVVPEDHPASLGAFN--NSAAVEALYKTCDLLLVVGSRLRGNETLKYS-LALPRPLIRVDADAAADGRGYPNDLFVH 312 (544)
T ss_pred CccccCCCCChhhcccCC--CCHHHHHHHHhCCEEEEecCCCCcccccccc-cCCCCceEEEeCCHHHhCCcCCCCceEe
Confidence 999999999999999987 6777889999999999999999888776553 3234589999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCH-HHHHHHHHhcCCCCCeEEEeCCCh-hH
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPP-QYAIQILNELTDDEETIISTGVGQ-HQ 462 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~L~~~l~~~d~iv~~d~G~-~~ 462 (643)
+|++.+|++|++.+.... .....|.+++...+.++... ..+.+.+ ..+++.|++.+++ +.+++.|+|. +.
T Consensus 313 ~d~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~-~~ii~~d~~~~~~ 384 (544)
T PRK07064 313 GDAARVLARLADRLEGRL----SVDPAFAADLRAAREAAVAD---LRKGLGPYAKLVDALRAALPR-DGNWVRDVTISNS 384 (544)
T ss_pred cCHHHHHHHHHHhhhhcc----ccchHHHHHHHHHHHhhhhh---cccccCcHHHHHHHHHHhCCC-CCEEEeCCccchH
Confidence 999999999998775421 11246877666554443221 1233555 4699999999999 9999999984 58
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|..++++...|++++++.+ |+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|+++||+||++||
T Consensus 385 ~~~~~~~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~yg 463 (544)
T PRK07064 385 TWGNRLLPIFEPRANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLMNDGGYG 463 (544)
T ss_pred HHHHHhcCccCCCceeccCC-CccccccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEEEEeCChhH
Confidence 89999999999998887766 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccc
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVP 622 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p 622 (643)
|++.+|...|+.+..... ...+||.++|++||+++++|++++||+++|+++++.++|+||||.++. ++.+|
T Consensus 464 ~~~~~~~~~~~~~~~~~~--------~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~~~~-~~~~~ 534 (544)
T PRK07064 464 VIRNIQDAQYGGRRYYVE--------LHTPDFALLAASLGLPHWRVTSADDFEAVLREALAKEGPVLVEVDMLS-IGPFA 534 (544)
T ss_pred HHHHHHHHhcCCcccccc--------CCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEEEccc-ccccC
Confidence 999998766654433221 346899999999999999999999999999999999999999999984 33444
Q ss_pred cc
Q 040733 623 MI 624 (643)
Q Consensus 623 ~~ 624 (643)
+.
T Consensus 535 ~~ 536 (544)
T PRK07064 535 AA 536 (544)
T ss_pred CC
Confidence 44
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-97 Score=838.91 Aligned_cols=530 Identities=23% Similarity=0.355 Sum_probs=451.8
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
++++|+|++.|+++||++|||+||+.++++++++.+.+|++|.+|||++|+|||+||+|+||+||||++|+|||++|+++
T Consensus 3 ~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~ 82 (554)
T TIGR03254 3 TDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLT 82 (554)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHH
Confidence 57999999999999999999999999999999997656999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCccccc--CCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLL--GTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~--g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
||++|+.|++|||+|+|+.++... +++.+|++||..+++++|||++++.+++++++.|++||+.|+++|||||||+||
T Consensus 83 gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 83 ALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred HHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 999999999999999999998743 667899999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.+++..........+.........++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|++
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~ 242 (554)
T TIGR03254 163 AAVLGQTMEAEKAKKTLVKVVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSM 242 (554)
T ss_pred HHHhhccccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHHCCCEEEcCC
Confidence 99998876422110000000000001235788999999999999999999999997 6789999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcc-ccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKL-EDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~-~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
|||+||++||+++|. ..++++++||+||++|++++++.+..+ ..|.+++++||||+|+.+++++++.++.|.
T Consensus 243 gkg~~p~~hp~~~g~-------~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~ 315 (554)
T TIGR03254 243 AKGLLPDTHPQSAAA-------ARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVV 315 (554)
T ss_pred cceeCCCCCchhhhH-------HHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEe
Confidence 999999999999873 346789999999999999988776543 346667899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc----cCCCCCCCHHHHHHHHHhcCCC-CCeEEEeCCC
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY----KTFGEEIPPQYAIQILNELTDD-EETIISTGVG 459 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~L~~~l~~-~d~iv~~d~G 459 (643)
+|++.+|++|++.++.... .....|.+++.+.++++.... .....++++..+++.|++.+++ .|.+++.|.|
T Consensus 316 ~D~~~~l~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~ivv~d~~ 392 (554)
T TIGR03254 316 GDIGSVVQALLSAAKNGGV---KPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVNEGA 392 (554)
T ss_pred cCHHHHHHHHHHHhhhccc---cchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 9999999999988864211 123568777766554432111 1123579999999999999964 2789999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
++..|+.++++..+|++|+.++++|+|||++|+|||++++. +++||+|+|||||+|++|||+|++||++|+++||+||+
T Consensus 393 ~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala~-~~~vv~i~GDGsf~m~~~EL~Ta~r~~l~v~~vV~NN~ 471 (554)
T TIGR03254 393 NTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVET-GKPVVALEGDSAFGFSGMEVETICRYNLPVCVVIFNNG 471 (554)
T ss_pred hHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhcC-CCcEEEEEcCchhcccHHHHHHHHHcCCCEEEEEEeCh
Confidence 99999999999999999999999999999999999999995 89999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 540 ~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
+|. +..|...++....... ....+||.++|++||+++++|++.+||+++|+++++.++|+||||++++++.
T Consensus 472 ~~~--~~~~~~~~~~~~~~~~-------~~~~~df~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~id~~~~ 542 (554)
T TIGR03254 472 GIY--RGDDVNVVGADPAPTV-------LVHGARYDKMMKAFGGVGYNVTTPDELKAALNEALASGKPTLINAVIDPSAG 542 (554)
T ss_pred hhh--hhhhhhhcCCCCCccc-------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEECCCcC
Confidence 862 2222222221111111 1246899999999999999999999999999999999999999999997753
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-96 Score=833.24 Aligned_cols=531 Identities=24% Similarity=0.347 Sum_probs=451.2
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+.++++++|++.|+++||++|||+||+.++++++++.+.+|++|.+|||++|+|||+||+|+||+||||++|+|||++|+
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 87 (569)
T PRK09259 8 QLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNG 87 (569)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 45799999999999999999999999999999999976669999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccc--cCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKL--LGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~--~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
++||++|+.+++|||+|+|+.++.. .+++.+|++||.++++++|||++++.+++++++.+++||+.|.++|||||||+
T Consensus 88 l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 167 (569)
T PRK09259 88 LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLD 167 (569)
T ss_pred HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEE
Confidence 9999999999999999999998764 35678999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 226 IPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
||.|++.+++..........+.........++++.+++++++|.+||||+|++|.|+. ++.+++.+|||++|+||++|
T Consensus 168 iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt 247 (569)
T PRK09259 168 LPAKVLAQTMDADEALTSLVKVVDPAPAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPM 247 (569)
T ss_pred eCHHHhhCcccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHHCCCEEec
Confidence 9999998776421000000000000111235788999999999999999999999997 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcc-ccccCCceEEEEcCCcccccCCCCCCee
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKL-EDFATRAKIVHIDIDSNEIGKVKLPDVS 382 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~-~~~~~~~~iI~Id~d~~~i~~~~~~~~~ 382 (643)
++|||+||++||+++|. ..++++++||+||+||++++++.+..+ ..|.+++++||||+|+.+++++++.++.
T Consensus 248 ~~gkg~~~e~hpl~~G~-------~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~ 320 (569)
T PRK09259 248 SMAKGLLPDTHPQSAAA-------ARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAP 320 (569)
T ss_pred ccccccCCCCChhhhhH-------HHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCcee
Confidence 99999999999999984 346789999999999999987765433 3455678999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc----cCCCCCCCHHHHHHHHHhcC--CCCCeEEEe
Q 040733 383 ICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY----KTFGEEIPPQYAIQILNELT--DDEETIIST 456 (643)
Q Consensus 383 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~L~~~l--~~~d~iv~~ 456 (643)
+.+|++.+|++|++.++... ......|.+++...+.++.... .....++++..+++.|++++ ++ |.+|+.
T Consensus 321 i~~D~~~~L~~L~~~l~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~-d~iv~~ 396 (569)
T PRK09259 321 VVGDIGSVMQALLAGLKQNT---FKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENP-DIYLVN 396 (569)
T ss_pred EecCHHHHHHHHHHHhhhcc---ccchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCCCC-CEEEEe
Confidence 99999999999998876421 1123578877766554432111 11235699999999999999 44 888888
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|.|++..|..++++...|++++.++++|+|||++|+|||++++ ++++||+|+|||||+|++|||+|++||++|+++||+
T Consensus 397 ~~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-~~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~vV~ 475 (569)
T PRK09259 397 EGANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-TGKPVVAIEGDSAFGFSGMEVETICRYNLPVTVVIF 475 (569)
T ss_pred CchHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-CCCcEEEEecCccccccHHHHHHHHHcCCCEEEEEE
Confidence 9898888988889999999999999999999999999999999 589999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhc-ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 537 NNQYLGMNVEYEDRYFE-ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~-~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
||++| .+..+...+. .+..... ....+||.++|++||+++++|++.+||+++|+++++.++|+||||.++
T Consensus 476 NN~~~--~~~~~~~~~~~~~~~~~~-------~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~id 546 (569)
T PRK09259 476 NNGGI--YRGDDVNLSGAGDPSPTV-------LVHHARYDKMMEAFGGVGYNVTTPDELRHALTEAIASGKPTLINVVID 546 (569)
T ss_pred eChhH--HHHHHHHhhcCCCccccc-------cCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 99975 2222222222 1211111 124689999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 040733 616 YQEH 619 (643)
Q Consensus 616 ~~~~ 619 (643)
++++
T Consensus 547 ~~~~ 550 (569)
T PRK09259 547 PAAG 550 (569)
T ss_pred CCCC
Confidence 8764
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-95 Score=822.22 Aligned_cols=522 Identities=33% Similarity=0.476 Sum_probs=455.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
.++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.++||++|+|||+||+|+||+|+||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N 82 (542)
T PRK08266 3 TMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLN 82 (542)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 36999999999999999999999999999999999875 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCC--CCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEE
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDA--FQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVL 223 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~--~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~ 223 (643)
+++||++|+.+++|||+|+||++....+++. +|+ .||.++++++|||++++.+++++++.+++|++.|+++++||||
T Consensus 83 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~ 162 (542)
T PRK08266 83 AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVA 162 (542)
T ss_pred HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 9999999999999999999999988877754 566 4999999999999999999999999999999999999999999
Q ss_pred EEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeec
Q 040733 224 IDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 224 i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt 303 (643)
|+||.|++.++++.... + .. .......++.+.+++++++|.+||||+|++|+|+.++.+++.+|+|++|+||++|
T Consensus 163 l~iP~dv~~~~~~~~~~-~-~~---~~~~~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~~~a~~~l~~lae~~g~pv~tt 237 (542)
T PRK08266 163 LEMPWDVFGQRAPVAAA-P-PL---RPAPPPAPDPDAIAAAAALIAAAKNPMIFVGGGAAGAGEEIRELAEMLQAPVVAF 237 (542)
T ss_pred EEeCHhHhhCccccccc-c-cc---cCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCChhhHHHHHHHHHHHHCCCEEEe
Confidence 99999998876532110 0 11 1011123678889999999999999999999998788899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||.||++||+++|.. .++++++++|+||+||+++++. +..|..+.++.++||||+|+.++++ +..++.|
T Consensus 238 ~~~kg~~~~~hp~~~g~~------~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i 309 (542)
T PRK08266 238 RSGRGIVSDRHPLGLNFA------AAYELWPQTDVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEMRR-LKPDVAI 309 (542)
T ss_pred ccccccCCCCCccccCCH------HHHHHHHhCCEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHhCC-cCCCceE
Confidence 999999999999998753 4577899999999999999877 4344434456789999999999999 8899999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHH-HHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQ-YAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|++.+.... .....|.+++...+..+... ...+++. .+++.|++.+++ |.+++.|+|++.
T Consensus 310 ~~D~~~~l~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~lp~-d~ivv~d~g~~~ 380 (542)
T PRK08266 310 VADAKAGTAALLDALSKAG----SKRPSRRAELRELKAAARQR----IQAVQPQASYLRAIREALPD-DGIFVDELSQVG 380 (542)
T ss_pred ecCHHHHHHHHHHhhhhcc----cCchHHHHHHHHHHHhhhhc----cccCCHHHHHHHHHHHhcCC-CcEEEeCCcHHH
Confidence 9999999999998876421 11235776666555433211 1236775 479999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
.|...+++...+++|+.++++|+|||++|+|+|+++++|+++||+|+|||||+|++|||+|+++|++|+++||+||++|+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~ivv~NN~~y~ 460 (542)
T PRK08266 381 FASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTVVFNNNAYG 460 (542)
T ss_pred HHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCcch
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
++++.|+..|+.+..+.. ...+||.++|++||+++++|++.+||+++|+++++.++|+||||.+++++..
T Consensus 461 ~~~~~~~~~~~~~~~~~~--------~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 461 NVRRDQKRRFGGRVVASD--------LVNPDFVKLAESFGVAAFRVDSPEELRAALEAALAHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred HHHHHHHHhcCCCcccCC--------CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEecCCCCc
Confidence 999888765644332221 2458999999999999999999999999999999999999999999887654
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-96 Score=829.05 Aligned_cols=538 Identities=28% Similarity=0.425 Sum_probs=456.8
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
..++++++|++.|+++||++|||+|+.. .+++++.+.+|++|.+|||++|+|||+||||+||+|+||++|+|||++|+
T Consensus 12 ~~~~~a~~i~~~L~~~GV~~vFG~~~~~--~~~~~~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 89 (578)
T PRK06112 12 LNGTVAHAIARALKRHGVEQIFGQSLPS--ALFLAAEAIGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPAATLL 89 (578)
T ss_pred cCcCHHHHHHHHHHHCCCCEEeecccch--HhHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHH
Confidence 4579999999999999999999998653 35567765569999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++||.+++|||+|+|+.+....+++.+|++||.++++++|||++++.+++++++.+++||+.|+++++|||||+||
T Consensus 90 ~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 90 VAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred HHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 228 VDVQLELAVPNWN-QPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 228 ~Dv~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
.|++.+++..... .+..++.+. ..+..+++..+++++++|++||||+||+|+|+. ++.+++.+|+|++|+||++|+
T Consensus 170 ~Dv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~~t~ 248 (578)
T PRK06112 170 ADLLTAAAAAPAAPRSNSLGHFP-LDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLPVATTN 248 (578)
T ss_pred HhHhhCccccccCcccccccCCC-CCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEcc
Confidence 9999877632110 000111111 111235778899999999999999999999986 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCc-----HHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCC
Q 040733 305 MGLGLFPCTDELCLRMVGMFGT-----VYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLP 379 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~-----~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~ 379 (643)
+|||.||++||+++|++|..+. ..++++++++|+||+||++++++.+..|..+.+++++||||+|+.++++++.
T Consensus 249 ~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~- 327 (578)
T PRK06112 249 MGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVGRNYE- 327 (578)
T ss_pred cccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECCCCCccccccccccCCCCeEEEEECChHHhCcccc-
Confidence 9999999999999999876432 3677889999999999999998887766656667899999999999999876
Q ss_pred CeeEecCHHHHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCC---c-ccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 380 DVSICADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQKKKYPF---S-YKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 380 ~~~i~~D~~~~L~~L~~~l~~~~~~~-~~~~~~w~~~~~~~~~~~~~---~-~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
++.|++|++.+|++|++.+....... ......|.+.+.+.+..+.. . ......++++.++++.|++.+++ +.++
T Consensus 328 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~l~~-~~iv 406 (578)
T PRK06112 328 ALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPIRPERIMAELQAVLTG-DTIV 406 (578)
T ss_pred ceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCcCHHHHHHHHHHhCCC-CCEE
Confidence 69999999999999998875432110 11223455444332222110 0 01123469999999999999999 9999
Q ss_pred EeCCChhHHHHHHhccccCCC-eEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEE
Q 040733 455 STGVGQHQMWAIQFYMYKRAR-QLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~-~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~i 533 (643)
+.|+|++..|..+++....+. +|+++.++|+||+++|+|+|+++++|+++||+|+|||||+|+++||+|+++||+|+++
T Consensus 407 v~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~~ 486 (578)
T PRK06112 407 VADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETARRMGVPVTI 486 (578)
T ss_pred EEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHhHHHHHHHHHHhCCCeEE
Confidence 999999999999999876665 6899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEE
Q 040733 534 LLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613 (643)
Q Consensus 534 vV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~ 613 (643)
||+||++||++++.|...|+...... ....+||.++|++||+++++|++.+||+++|+++++.+||.||||+
T Consensus 487 vv~NN~~~g~~~~~~~~~~~~~~~~~--------~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~ 558 (578)
T PRK06112 487 VVLNNGILGFQKHAETVKFGTHTDAC--------HFAAVDHAAIARACGCDGVRVEDPAELAQALAAAMAAPGPTLIEVI 558 (578)
T ss_pred EEEeCCccCCEEeccccccCCccccC--------cCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999998766654443322111 1246899999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 040733 614 VSYQE 618 (643)
Q Consensus 614 v~~~~ 618 (643)
+++++
T Consensus 559 ~~~~~ 563 (578)
T PRK06112 559 TDPSA 563 (578)
T ss_pred cCccc
Confidence 98765
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-97 Score=836.51 Aligned_cols=534 Identities=19% Similarity=0.256 Sum_probs=445.7
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
++.++++|+|++.|+++||+||||+||+.+++|+++|.+. +|++|.||||++|+||||||||+|| +|||++|+|||++
T Consensus 13 ~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~ 91 (578)
T PLN02573 13 SSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARG-VGACVVTFTVGGL 91 (578)
T ss_pred cccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhC-CCeEEEecCccHH
Confidence 3457899999999999999999999999999999999765 5999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCc--------cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE--------IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~--------~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
|+++||++||.|++|||+|+|+.++...+++.+|+ .++.++|+++|||++++.+++++++.+++||+.|+++
T Consensus 92 n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~ 171 (578)
T PLN02573 92 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALKE 171 (578)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988777766322 1346899999999999999999999999999999998
Q ss_pred CCCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHH
Q 040733 218 RPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGL 295 (643)
Q Consensus 218 ~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~ 295 (643)
| |||||+||.|++.+++.+....+.............+.+..+++++++|++||||+|++|+|+. ++.+++++|||+
T Consensus 172 ~-gPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~ 250 (578)
T PLN02573 172 S-KPVYISVSCNLAAIPHPTFSREPVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACKAFVELADA 250 (578)
T ss_pred C-CCEEEEeehhhhcCccccccCCCCCcccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHHHHHHHHHH
Confidence 6 9999999999988664221000111100000000113567899999999999999999999996 678999999999
Q ss_pred hCCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCccccc
Q 040733 296 TGIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 296 lg~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~ 374 (643)
+|+||+||++|||+||++||+++|++ |..++..+++++++||+||+||++++++.+..+..+.+++++||||+|+.+++
T Consensus 251 ~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~ 330 (578)
T PLN02573 251 SGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTIG 330 (578)
T ss_pred hCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEEC
Confidence 99999999999999999999999998 88899999999999999999999999888766655556788999999999999
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
+++ ++.+. |++.+|++|++.+..+. ..+..|.. ....+.+.. ......++++.++++.|++.+++ |.||
T Consensus 331 ~~~--~~~~~-~~~~~l~~L~~~l~~~~----~~~~~~~~-~~~~~~~~~--~~~~~~~i~~~~~~~~l~~~l~~-d~ii 399 (578)
T PLN02573 331 NGP--AFGCV-LMKDFLEALAKRVKKNT----TAYENYKR-IFVPEGEPL--KSEPGEPLRVNVLFKHIQKMLSG-DTAV 399 (578)
T ss_pred Ccc--eECCc-CHHHHHHHHHHHhhccc----cccccccc-cccCcccCC--CCCCCCccCHHHHHHHHHHhcCC-CCEE
Confidence 864 44444 89999999998875421 11122321 110011100 01123469999999999999998 9999
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
+.|+|++ +|..+++..+++..|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++|
T Consensus 400 v~D~G~~-~~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~v 478 (578)
T PLN02573 400 IAETGDS-WFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIF 478 (578)
T ss_pred EEecccc-hhhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHHHHcCCCCEEE
Confidence 9999997 555677887778889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCC-----CCEEEeCChhHHHHHHHHHHh--CCCc
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACG-----IPAARVTKKKDVRAAIQLMLE--TPGP 607 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G-----~~~~~V~~~~eL~~al~~al~--~~gp 607 (643)
|+||++||++++.+.. . ++ ....+||.++|++|| +++.+|++.+||+++|+++++ .++|
T Consensus 479 V~NN~~yg~~~~~~~~----~-----~~-----~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p 544 (578)
T PLN02573 479 LINNGGYTIEVEIHDG----P-----YN-----VIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCL 544 (578)
T ss_pred EEeCCceeEEEeeccc----C-----cc-----ccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCc
Confidence 9999999998754311 0 10 124589999999996 899999999999999999984 7999
Q ss_pred EEEEEEeCCCCCcccccCCCc
Q 040733 608 YLLDVMVSYQEHVVPMIPYDK 628 (643)
Q Consensus 608 ~lIeV~v~~~~~~~p~~~~~~ 628 (643)
+||||++++++...|+.+...
T Consensus 545 ~lieV~v~~~~~~~~~~~~~~ 565 (578)
T PLN02573 545 CFIEVIVHKDDTSKELLEWGS 565 (578)
T ss_pred EEEEEEcCcCCCCHHHHHHHH
Confidence 999999998887776665443
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-95 Score=816.17 Aligned_cols=532 Identities=23% Similarity=0.260 Sum_probs=444.9
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC------CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS------NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSG 141 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~------~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~G 141 (643)
.+++++|+|++.|+++||++|||+||+++++|++++.+. +|++|.||||++|+||||||+|+|||||||++|+|
T Consensus 5 ~~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~G 84 (569)
T PRK08327 5 TMYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVD 84 (569)
T ss_pred ccccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 357899999999999999999999999999999999753 38999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--------CCCCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHH
Q 040733 142 PGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--------DAFQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFF 212 (643)
Q Consensus 142 pG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--------~~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~ 212 (643)
||++|+++||++|+.|++|||+|+|+.++...++ +.+|+ +|+..+++++|||++++.+++++.+.+++|++
T Consensus 85 PG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~ 164 (569)
T PRK08327 85 VGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQ 164 (569)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776543 46899 69999999999999999999999999999999
Q ss_pred HhhcCCCCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHH
Q 040733 213 IATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELR 290 (643)
Q Consensus 213 ~A~s~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~ 290 (643)
.|.++|+|||||+||.|++.+++...... .+.......+.++++.+++++++|++||||+|++|+|+. ++.+++.
T Consensus 165 ~a~~~~~GPV~i~iP~Dv~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~ 241 (569)
T PRK08327 165 IAMSEPKGPVYLTLPREVLAEEVPEVKAD---AGRQMAPAPPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFASLR 241 (569)
T ss_pred HHhcCCCCCEEEECcHHHHhhhccccccC---ccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHHHH
Confidence 99999999999999999998876431100 001111112236788999999999999999999999997 6789999
Q ss_pred HHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCc
Q 040733 291 KFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDS 370 (643)
Q Consensus 291 ~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~ 370 (643)
+|||++++||++|++|||.||++||+++|.+ ++++++++||||++|+++++..+.. .+.+++++||||+|+
T Consensus 242 ~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~-------~~~~~~~aDlvl~lG~~l~~~~~~~--~~~~~~~vi~Id~d~ 312 (569)
T PRK08327 242 RLAEELAIPVVEYAGEVVNYPSDHPLHLGPD-------PRADLAEADLVLVVDSDVPWIPKKI--RPDADARVIQIDVDP 312 (569)
T ss_pred HHHHHhCCCEEecCCCceeCCCCCccccccc-------cchhhhhCCEEEEeCCCCCCccccc--cCCCCCeEEEEeCCh
Confidence 9999999999999999999999999999864 5778899999999999987654432 245567999999999
Q ss_pred cccc---CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCC----CChhHHHHHHHHHHHhCCCc--ccCCCCCCCHHHHHH
Q 040733 371 NEIG---KVKLPDVSICADAKLVFNRMNMILESKGVGFM----FDFSAWREELHEQKKKYPFS--YKTFGEEIPPQYAIQ 441 (643)
Q Consensus 371 ~~i~---~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~----~~~~~w~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~ 441 (643)
.+++ ++++.++.|++|++.+|++|++.++....... .....|.++..+.+...... ....++++++.++++
T Consensus 313 ~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 392 (569)
T PRK08327 313 LKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYLSY 392 (569)
T ss_pred hhhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhhccCCCCCcCHHHHHH
Confidence 9987 47888999999999999999988864211100 01224655544332221100 011235799999999
Q ss_pred HHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHH-
Q 040733 442 ILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQE- 520 (643)
Q Consensus 442 ~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~e- 520 (643)
.|++.+++ +.+|+.+. .|..++++.+++.+|++++++|+|||++|+|+|+++++|+++||+|+|||||+|+.+|
T Consensus 393 ~l~~~l~~-~~~vv~~~----~~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~ 467 (569)
T PRK08327 393 CLGEVADE-YDAIVTEY----PFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEA 467 (569)
T ss_pred HHHHhcCc-cceEEecc----HHHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcHH
Confidence 99999998 77777554 4888999999999999999999999999999999999999999999999999999876
Q ss_pred -HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHH
Q 040733 521 -LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ 599 (643)
Q Consensus 521 -L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~ 599 (643)
|+|++|+|+|+++||+||++||++++.|...|...........+.......+||+++|++||+++++|++++||+++++
T Consensus 468 ~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~ 547 (569)
T PRK08327 468 AHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVEDPEELKGALR 547 (569)
T ss_pred HHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHH
Confidence 8999999999999999999999999988776653211000000011112568999999999999999999999999999
Q ss_pred HHHhC----CCcEEEEEEeCC
Q 040733 600 LMLET----PGPYLLDVMVSY 616 (643)
Q Consensus 600 ~al~~----~gp~lIeV~v~~ 616 (643)
++++. +||+||||++++
T Consensus 548 ~a~~~~~~~~gp~liev~v~~ 568 (569)
T PRK08327 548 RALAAVRKGRRSAVLDVIVDR 568 (569)
T ss_pred HHHHHHhcCCCcEEEEEEccC
Confidence 99875 789999999964
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-94 Score=801.91 Aligned_cols=514 Identities=21% Similarity=0.266 Sum_probs=432.6
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
+.+|+|++.|+++||++|||+||+++++|+++|.+.+ |++|.+|||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 4789999999999999999999999999999998877 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCc-----c-CHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEE
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQE-----I-PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVL 223 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~-----~-d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~ 223 (643)
||++||.+++|||+|+|+.++...+++.+|+ + ||.++++++|||++++.+++++++.+++|++.|.+ ++||||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~ 159 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVY 159 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEE
Confidence 9999999999999999999998888887543 6 48899999999999999999999999999999998 559999
Q ss_pred EEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 224 IDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 224 i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
|+||.|++.+++.+. ...+... . ...+.++.+++++++|++||||+|++|+|+. ++.+++++|||++|+||+
T Consensus 160 i~iP~Dv~~~~~~~~----~~~~~~~-~-~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~ 233 (535)
T TIGR03394 160 LEIPRDMVNAEVEPV----PDDPAWP-V-DRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPVV 233 (535)
T ss_pred EEechhhccCccCCC----CCCCCCC-C-ChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCCCEE
Confidence 999999998776421 0111111 0 0112456789999999999999999999997 678999999999999999
Q ss_pred ecCCCCCCCCCCCCCcccc-cCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCC
Q 040733 302 CTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPD 380 (643)
Q Consensus 302 tt~~gkg~~~~~hpl~lG~-~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~ 380 (643)
+|++|||+||++||+++|+ .|..++..+++++++|||||+||++++++.+.....+.++.++||||+|+.+++++++.+
T Consensus 234 tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~~~~~~~ 313 (535)
T TIGR03394 234 TTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLGYHVYAD 313 (535)
T ss_pred EccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEECCeeECC
Confidence 9999999999999999995 688899999999999999999999998875533333445679999999999999999999
Q ss_pred eeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCC-CeEEEeCCC
Q 040733 381 VSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDE-ETIISTGVG 459 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~-d~iv~~d~G 459 (643)
+.+ +|+..+|++|++.+.... ...|.+.... ..........+++|.++++.|++.++++ +.+++.|+|
T Consensus 314 ~~i-~d~~~~L~~l~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G 382 (535)
T TIGR03394 314 IPL-AGLVDALLALLCGLPPSD------RTTRGKGPHA----YPRGLQADAEPIAPMDIARAVNDRFARHGQMPLAADIG 382 (535)
T ss_pred ccH-HHHHHHHHHhhhcccccc------cccccccccc----cccccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccC
Confidence 998 889888888876542110 0112111111 1110011234699999999999999862 257889999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
++..|+.. + ++++|+.++++|+|||++|+|||+++|.| +++|+|+|||||+|++|||+|++|||+|+++||+||+
T Consensus 383 ~~~~~~~~-~---~~~~~~~~~~~g~mG~glpaaiGa~lA~~-~r~v~i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~ 457 (535)
T TIGR03394 383 DCLFTAMD-M---DDAGLMAPGYYAGMGFGVPAGIGAQCTSG-KRILTLVGDGAFQMTGWELGNCRRLGIDPIVILFNNA 457 (535)
T ss_pred HHHHHHHh-c---CCCcEECcCccchhhhHHHHHHHHHhCCC-CCeEEEEeChHHHhHHHHHHHHHHcCCCcEEEEEECC
Confidence 98766644 3 26789999999999999999999999986 4568899999999999999999999999999999999
Q ss_pred CchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC-CCcEEEEEEeCCCC
Q 040733 540 YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET-PGPYLLDVMVSYQE 618 (643)
Q Consensus 540 ~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~-~gp~lIeV~v~~~~ 618 (643)
+|+|++++|... .... ...+||+++|++||+++++|++.+||+++|+++++. ++|.||||++++.+
T Consensus 458 ~y~~~~~~~~~~-----~~~~--------~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~ 524 (535)
T TIGR03394 458 SWEMLRVFQPES-----AFND--------LDDWRFADMAAGMGGDGVRVRTRAELAAALDKAFATRGRFQLIEAMLPRGV 524 (535)
T ss_pred ccceeehhccCC-----Cccc--------CCCCCHHHHHHHcCCCceEeCCHHHHHHHHHHHHhcCCCeEEEEEECCccc
Confidence 999998876321 1111 235899999999999999999999999999999975 45899999999877
Q ss_pred Cc
Q 040733 619 HV 620 (643)
Q Consensus 619 ~~ 620 (643)
..
T Consensus 525 ~~ 526 (535)
T TIGR03394 525 LS 526 (535)
T ss_pred CC
Confidence 43
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-94 Score=808.80 Aligned_cols=511 Identities=19% Similarity=0.282 Sum_probs=432.6
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
+|++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+||||||+|+|| ++||++|+|||++|++
T Consensus 1 ~t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~ 79 (539)
T TIGR03393 1 YTVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAI 79 (539)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHh
Confidence 3799999999999999999999999999999999765 5999999999999999999999999 7999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCccc----------ccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCC
Q 040733 149 TGLMDAYSDSIPILAITGQVSQK----------LLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGR 218 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~----------~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~ 218 (643)
+||++||.|++|||+|+||.++. ..+.+.||+. .++++++|||++.+ +++++++.+++|++.|.+++
T Consensus 80 ~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~ 156 (539)
T TIGR03393 80 NGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF--YRMAAEVTVAQAVL-TEQNATAEIDRVITTALRER 156 (539)
T ss_pred hHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHH--HHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999874 3344556753 68999999998866 78999999999999999875
Q ss_pred CCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHh
Q 040733 219 PGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLT 296 (643)
Q Consensus 219 ~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~l 296 (643)
|||||+||.|++.+++.... .....+....+...+++.+++++++|++||||+|++|+|+. ++.+++.+|+|++
T Consensus 157 -gPv~l~iP~Dv~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~ 232 (539)
T TIGR03393 157 -RPGYLMLPVDVAAKAVTPPV---NPLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEV 232 (539)
T ss_pred -CCEEEEecccccCCccCCCC---cccCcCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHHHHHHh
Confidence 99999999999988764211 01111110000001124589999999999999999999996 6789999999999
Q ss_pred CCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCccccc
Q 040733 297 GIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 297 g~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~i~ 374 (643)
++||++|++|||+||++||+++|++ |..+...+++++++||+||++|++++++.+..+.. +. ..++||||+|+.+++
T Consensus 233 ~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~-~~~~I~id~~~~~~~ 311 (539)
T TIGR03393 233 PMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLT-PEQTIDVQPHAARVG 311 (539)
T ss_pred CCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccccceeeccCC-cccEEEEcCCeEEEC
Confidence 9999999999999999999999998 55566788999999999999999999888766542 43 468999999999999
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
+++..++.+ +|+..+|++|++.+.. .|.+. ...+...+ .....++++..+++.|++.+++ +.+|
T Consensus 312 ~~~~~~~~i-~D~~~~l~~l~~~l~~----------~~~~~-~~~~~~~~---~~~~~~l~~~~~~~~l~~~l~~-~~ii 375 (539)
T TIGR03393 312 NVWFTGIPM-NDAIETLVELCEHAGL----------MWSSS-GAIPFPQP---DESRSALSQENFWQTLQTFLRP-GDII 375 (539)
T ss_pred ceEeCCcCH-HHHHHHHHHHhhhccc----------ccccc-cccCcCCC---CCCCCccCHHHHHHHHHHhcCC-CCEE
Confidence 999889888 9999999999876531 23211 00010111 1122469999999999999998 9999
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
+.|+|++. |..++++.+.+++++.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++||++|+++|
T Consensus 376 v~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~v 454 (539)
T TIGR03393 376 LADQGTSA-FGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIIL 454 (539)
T ss_pred EEccCchh-hhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEE
Confidence 99999986 78889998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC----EEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP----AARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~----~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
|+||++|+++++++. ++.. .. ....+||.++|++||++ +++|++.+||+++|+++++.++|+||
T Consensus 455 V~NN~~y~~i~~~~~--~~~~--~~--------~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~p~li 522 (539)
T TIGR03393 455 VLNNEGYTVERAIHG--AEQR--YN--------DIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAAHERLSLI 522 (539)
T ss_pred EEeCCceEEEEeecC--CCCC--cC--------cCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhccCCeEEE
Confidence 999999999875431 1111 11 12458999999999996 89999999999999999999999999
Q ss_pred EEEeCCCC
Q 040733 611 DVMVSYQE 618 (643)
Q Consensus 611 eV~v~~~~ 618 (643)
||++++++
T Consensus 523 ev~i~~~~ 530 (539)
T TIGR03393 523 EVVLPKAD 530 (539)
T ss_pred EEEcCccc
Confidence 99998754
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-93 Score=727.85 Aligned_cols=542 Identities=29% Similarity=0.413 Sum_probs=463.9
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
.+.++|++.+++.|+.+||+++||+-|.++.+|..+..+.||+||.+|||++|+|||++|+++|||||||++++|||.+|
T Consensus 11 ~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqalGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~h 90 (571)
T KOG1185|consen 11 ASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQALGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGPGLTH 90 (571)
T ss_pred cccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHcCCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCChHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++|++||+.+.+|||+|.|..++...++++|||+||+++++|+||++.++.++++|+..+++|++.|++|+|||||+++
T Consensus 91 al~gv~NA~~n~wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~ 170 (571)
T KOG1185|consen 91 ALAGVANAQMNCWPLLLIGGSASTLLENRGAFQELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDL 170 (571)
T ss_pred HHHHhhhhhhccCcEEEEecccchhhhcccccccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCCCCceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceee
Q 040733 227 PVDVQLELAVPNWNQPC--KLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~t 302 (643)
|.|+.......+..... ..+....+.-+.|++..+++++++|++||||+|++|.|+. .+.++|++|.|.+|+|++.
T Consensus 171 P~d~v~~~~~~e~~~~~~~p~~~~p~P~i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflp 250 (571)
T KOG1185|consen 171 PADVVLPSKMVEKEIDVSEPQPPIPLPPIPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLP 250 (571)
T ss_pred ccceeeeecccccccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCCccc
Confidence 99954332211100010 0111110101347889999999999999999999999997 4568999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCc-cccccCCceEEEEcCCcccccCC-CCCC
Q 040733 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSK-LEDFATRAKIVHIDIDSNEIGKV-KLPD 380 (643)
Q Consensus 303 t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~-~~~~~~~~~iI~Id~d~~~i~~~-~~~~ 380 (643)
|+||||++|++||++++. .-..+|++||+||++|+|++++...+ -..|.++.|+|+||+.+++++.| ..++
T Consensus 251 tpMgKGll~d~hPl~v~~-------aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~~k~~ 323 (571)
T KOG1185|consen 251 TPMGKGLLPDNHPLNVSS-------ARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNFVKPD 323 (571)
T ss_pred CcccccCCCCCCchhhhH-------HHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcccCCCC
Confidence 999999999999999753 23468999999999999999988744 34688899999999999999999 7899
Q ss_pred eeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 381 VSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
+.|++|++.++.+|.+.|...+... ....+|.+++++..++-.. ....+..++++..+++.+++.++..|+|+++
T Consensus 324 v~i~gDig~~~~~L~e~l~~~~~~~-~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L~~~d~ilVs 402 (571)
T KOG1185|consen 324 VAIQGDIGLFVLQLVEELQDQPWTW-GPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELLPNDDTILVS 402 (571)
T ss_pred ceeeecHHHHHHHHHHHhcCCCccc-CCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhcCCCCcEEEe
Confidence 9999999999999999988754321 1223798888765332211 1123456799999999999999943999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|.+++...+...+..+.|++++..+.||+||.|++.|||+|+++|+++|+|+.||++|.|+.+|++|++||+||+++||+
T Consensus 403 EGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~vR~~Lpvv~vV~ 482 (571)
T KOG1185|consen 403 EGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFVRYKLPVVIVVG 482 (571)
T ss_pred cCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHHHhcCCeEEEEe
Confidence 99999888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC-chhhHH-HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-CCCcEEEEEE
Q 040733 537 NNQY-LGMNVE-YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-TPGPYLLDVM 613 (643)
Q Consensus 537 NN~~-~g~~~~-~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-~~gp~lIeV~ 613 (643)
||+| ||.-.. |+.-..+.. ....|......+.+|.+++++||.+++.|++++||..+++++.. +++|+||+|.
T Consensus 483 NN~Giyg~d~~~~~~I~e~~~----~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvINVl 558 (571)
T KOG1185|consen 483 NNNGIYGLDDDGWKQISEQDP----TLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVINVL 558 (571)
T ss_pred cCCcccccCcccHHHHhhcCc----ccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 7754 665432 222211111 12234445567889999999999999999999999999999996 5599999999
Q ss_pred eCCCCCc
Q 040733 614 VSYQEHV 620 (643)
Q Consensus 614 v~~~~~~ 620 (643)
+++.+..
T Consensus 559 I~p~~~r 565 (571)
T KOG1185|consen 559 IGPTAFR 565 (571)
T ss_pred ecccccc
Confidence 9987643
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-92 Score=792.21 Aligned_cols=515 Identities=24% Similarity=0.347 Sum_probs=443.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
+++++++|++.|+++||++|||+||+++++|+++|.+ +|++|.+|||++|+|||+||||+||+|+||++|+|||++|++
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~-~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~ 89 (530)
T PRK07092 11 MTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD-DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAM 89 (530)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh-cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHH
Confidence 4799999999999999999999999999999999964 599999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
+||++|+.+++|||+|+|+.++...+++.+|+ +||.++++++|||++++.+++++++.+++||+.|+++|+|||||+||
T Consensus 90 ~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 90 GNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred HHHHHHhhcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 99999999999999999999999888888754 79999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCC
Q 040733 228 VDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM 305 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~ 305 (643)
.|++.+++.+ . . +... .....++++.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|++
T Consensus 170 ~d~~~~~~~~-~--~---~~~~-~~~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~ 242 (530)
T PRK07092 170 YDDWDQPAEP-L--P---ARTV-SSAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPM 242 (530)
T ss_pred HHHhhCcccc-c--c---cCCC-CCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecC
Confidence 9998876532 1 0 0001 111236788899999999999999999999997 5678999999999999998875
Q ss_pred -CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCcccc-CccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 306 -GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT-SKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 306 -gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t-~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+||.+|++||+++|++|. +....+++++++|+||+||+++.+..+ .....|.++.++||||+|+.++++ ++.++.|
T Consensus 243 ~~kg~~~~~hp~~~G~~g~-~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i 320 (530)
T PRK07092 243 SGRCSFPEDHPLFAGFLPA-SREKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAW-APMGDAI 320 (530)
T ss_pred CCcCcCCCCCccccCcCCc-cHHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcC-CCCCCcc
Confidence 799999999999999874 345667889999999999997544333 222335557789999999999876 4678999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHH
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQM 463 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~ 463 (643)
.+|++.+|++|++.+..... ..|.. +..... ......++++..+++.|++.+++ +.+++.|+|++..
T Consensus 321 ~~d~~~~l~~L~~~l~~~~~------~~~~~-----~~~~~~-~~~~~~~l~~~~~~~~l~~~l~~-~~ivv~d~g~~~~ 387 (530)
T PRK07092 321 VGDIRLALRDLLALLPPSAR------PAPPA-----RPMPPP-APAPGEPLSVAFVLQTLAALRPA-DAIVVEEAPSTRP 387 (530)
T ss_pred cCCHHHHHHHHHHhhccccc------cchhh-----hhcccc-ccCCCCCcCHHHHHHHHHHhCCC-CeEEEeCCCccHH
Confidence 99999999999988753211 11111 001110 01123569999999999999999 9999999999999
Q ss_pred HHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchh
Q 040733 464 WAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543 (643)
Q Consensus 464 ~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~ 543 (643)
|..++++...+++|+.+. +|+||+++|+|+|++++.|+++||+|+|||+|+|+++||+|++++++|+++||+||++|++
T Consensus 388 ~~~~~~~~~~~~~~~~~~-~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lp~~~vv~NN~~~~~ 466 (530)
T PRK07092 388 AMQEHLPMRRQGSFYTMA-SGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNNGRYGA 466 (530)
T ss_pred HHHHhcCcCCCCceEccC-CCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHHhCCCcEEEEEeChHHHH
Confidence 999999999999998764 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
+++.|+..+..+..+. ....+||.++|++||+++++|++.+||+++|+++++.++|.||||.+|
T Consensus 467 ~~~~~~~~~~~~~~~~--------~~~~~d~~~~a~~~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~~d 530 (530)
T PRK07092 467 LRWFAPVFGVRDVPGL--------DLPGLDFVALARGYGCEAVRVSDAAELADALARALAADGPVLVEVEVA 530 (530)
T ss_pred HHHHHHhhCCCCCCCC--------CCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 9887765433221111 235689999999999999999999999999999999999999999985
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-92 Score=787.52 Aligned_cols=500 Identities=23% Similarity=0.285 Sum_probs=417.9
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
.+.++++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+||||||||+||||+||++|+|||++
T Consensus 2 ~~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~ 81 (518)
T PRK12474 2 GQTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLA 81 (518)
T ss_pred CcCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHh
Confidence 3567999999999999999999999999999999999765 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
|+++||++||.|++|||+|+||.++...+.+.+|+.|+..+++++|||++++.++++++++|++||+.|.++|+|||||+
T Consensus 82 N~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~ 161 (518)
T PRK12474 82 NGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLI 161 (518)
T ss_pred HhHHHHHHHhhcCCCEEEEeccCchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 226 IPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
||.|++.+++.... . .++... ++.++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|
T Consensus 162 iP~Dv~~~~~~~~~-~--~~~~~~---~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t 235 (518)
T PRK12474 162 MPADVAWNEAAYAA-Q--PLRGIG---PAPVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCD 235 (518)
T ss_pred echhhhcccccCCc-C--CCCCCC---CCCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEe
Confidence 99999877652111 0 111111 1236788999999999999999999999996 57889999999999999975
Q ss_pred ------CCCCCCCCC-CCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCc--ccc-Cccc-cccCCceEEEEcCCccc
Q 040733 304 ------TMGLGLFPC-TDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE--RMT-SKLE-DFATRAKIVHIDIDSNE 372 (643)
Q Consensus 304 ------~~gkg~~~~-~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~--~~t-~~~~-~~~~~~~iI~Id~d~~~ 372 (643)
++|||.+|+ +||++. ...++++++||+||++|++++. +.+ .++. .+...+++++++..
T Consensus 236 ~~~~~~~~gkg~~~~~~~~~~~--------~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 304 (518)
T PRK12474 236 TFAPRIERGAGRVPIERIPYFH--------EQITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQP--- 304 (518)
T ss_pred cCcccccCCCCCCCCcccccch--------HHHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECCC---
Confidence 469999995 567752 2456789999999999999632 111 1111 23345678888642
Q ss_pred ccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCe
Q 040733 373 IGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEET 452 (643)
Q Consensus 373 i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~ 452 (643)
.+|++.+|++|++.++... .|..+. ..... . ....++++.++++.|++.+++ |.
T Consensus 305 -----------~~d~~~~l~~L~~~l~~~~--------~~~~~~---~~~~~-~--~~~~~i~~~~~~~~l~~~l~~-d~ 358 (518)
T PRK12474 305 -----------DEDLAQALQDLADAVDAPA--------EPAART---PLALP-A--LPKGALNSLGVAQLIAHRTPD-QA 358 (518)
T ss_pred -----------CcCHHHHHHHHHHhccccc--------cccccc---ccccc-C--CCCCCcCHHHHHHHHHHHCCC-Ce
Confidence 1699999999987664311 111100 00110 0 123469999999999999998 99
Q ss_pred EEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeE
Q 040733 453 IISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVK 532 (643)
Q Consensus 453 iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ 532 (643)
||+.|+|++..|..++++..+|++|+.+.+ |+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++|++
T Consensus 359 iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~-gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv~ 437 (518)
T PRK12474 359 IYADEALTSGLFFDMSYDRARPHTHLPLTG-GSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVT 437 (518)
T ss_pred EEEECCCcCHHHHHHhhcccCCCCEEccCC-CccCccHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHHHCCCcE
Confidence 999999999999999999989999997755 9999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCchhhHHHHHHhhcccccc---cccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEE
Q 040733 533 ILLINNQYLGMNVEYEDRYFEANRAN---SFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609 (643)
Q Consensus 533 ivV~NN~~~g~~~~~q~~~~~~~~~~---~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~l 609 (643)
+||+||++|+++++.|...+.+.... .... ...+.+||.++|++||+++++|++++||.++|+++++.++|+|
T Consensus 438 iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~~~~~p~l 513 (518)
T PRK12474 438 VVIFANRSYAILNGELQRVGAQGAGRNALSMLD----LHNPELNWMKIAEGLGVEASRATTAEEFSAQYAAAMAQRGPRL 513 (518)
T ss_pred EEEEcCCcchHHHHHHHhhcCCCCCcccccccc----CCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcCCCCEE
Confidence 99999999999987765431110000 0000 0123579999999999999999999999999999999999999
Q ss_pred EEEEe
Q 040733 610 LDVMV 614 (643)
Q Consensus 610 IeV~v 614 (643)
|||++
T Consensus 514 iev~~ 518 (518)
T PRK12474 514 IEAMI 518 (518)
T ss_pred EEEEC
Confidence 99975
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-92 Score=785.11 Aligned_cols=498 Identities=24% Similarity=0.300 Sum_probs=417.3
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
|+++|+|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+||||||||+||+|+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 5899999999999999999999999999999999775 599999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++||.+++|||+|+||.++...+.+.+|+.||.++++++|||++++.+++++++.|++||+.|+++|+|||||+||.
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC--
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT-- 304 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~-- 304 (643)
|++.+++... .. ..+. .....++++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||+++.
T Consensus 161 Dv~~~~~~~~--~~-~~~~---~~~~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~ 234 (514)
T PRK07586 161 DVAWSEGGPP--AP-PPPA---PAPAAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFP 234 (514)
T ss_pred chhccccccc--cc-cCCC---CCCCCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccc
Confidence 9998765321 10 0111 111236888999999999999999999999997 678899999999999999864
Q ss_pred ----CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccc---cCccccc-cCCceEEEEcCCcccccCC
Q 040733 305 ----MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERM---TSKLEDF-ATRAKIVHIDIDSNEIGKV 376 (643)
Q Consensus 305 ----~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~---t~~~~~~-~~~~~iI~Id~d~~~i~~~ 376 (643)
+|||++|++|+.+.+ ..++++++++||||++|+++.... ......+ ..+.++++++..
T Consensus 235 ~~~~~gkg~~~~~~~~~~~-------~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 300 (514)
T PRK07586 235 ARMERGAGRPAVERLPYFA-------EQALAQLAGVRHLVLVGAKAPVAFFAYPGKPSRLVPEGCEVHTLAGP------- 300 (514)
T ss_pred cccccCCCCCCcccccchH-------HHHHHHHhcCCEEEEECCCCcccccccCCCccccCCCCceEEEECCC-------
Confidence 599999988876543 456778999999999999963211 1111111 123344443211
Q ss_pred CCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 377 KLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 377 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
.+|++.+|++|++.++.... . . ++.+. ... .....++++.++++.|++.+++ +.||+.
T Consensus 301 -------~~d~~~~l~~L~~~l~~~~~----~-~----~~~~~--~~~---~~~~~~i~~~~~~~~l~~~l~~-~~ivv~ 358 (514)
T PRK07586 301 -------GEDAAAALEALADALGAKPA----A-P----PLAAP--ARP---PLPTGALTPEAIAQVIAALLPE-NAIVVD 358 (514)
T ss_pred -------cccHHHHHHHHHHhhccccc----c-h----hhhhc--ccc---CCCCCCcCHHHHHHHHHHhCCC-CeEEEe
Confidence 27999999999887653210 0 0 11111 001 1123569999999999999999 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++..|..+++....|++|+++.+ |+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++|||+|+++||+
T Consensus 359 d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~ivV~ 437 (514)
T PRK07586 359 ESITSGRGFFPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIF 437 (514)
T ss_pred CCCcCHHHHHHhccccCCCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHHcCCCCEEEEE
Confidence 99999999999999999999998776 99999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccc---cccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEE
Q 040733 537 NNQYLGMNVEYEDRYFEANR---ANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~---~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~ 613 (643)
||++|++++++|...+.... ...+. ......+||.++|++||+++++|++++||+++|+++++.++|.||||+
T Consensus 438 NN~~y~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~~lA~a~G~~~~~V~~~~el~~al~~a~~~~~p~liev~ 513 (514)
T PRK07586 438 ANRAYAILRGELARVGAGNPGPRALDML----DLDDPDLDWVALAEGMGVPARRVTTAEEFADALAAALAEPGPHLIEAV 513 (514)
T ss_pred eCchhHHHHHHHHHhcCCCCCccccccc----cCCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999999998865432111 00000 001235899999999999999999999999999999999999999998
Q ss_pred e
Q 040733 614 V 614 (643)
Q Consensus 614 v 614 (643)
+
T Consensus 514 ~ 514 (514)
T PRK07586 514 V 514 (514)
T ss_pred C
Confidence 5
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-92 Score=799.56 Aligned_cols=529 Identities=17% Similarity=0.185 Sum_probs=433.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++++|++.|+++||++|||+||+++++|+++|.++. |++|.+|||++|+|||+||+|+||+|+||++|+|||++|+
T Consensus 8 ~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~ 87 (568)
T PRK07449 8 NTLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANL 87 (568)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhh
Confidence 378999999999999999999999999999999997664 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCc--CcHHHHHHHHHHH---hhcCCCCeE
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDV--DDIPRIIKEAFFI---ATSGRPGPV 222 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~--~~i~~~l~~A~~~---A~s~~~GPV 222 (643)
++||++||.+++|||+|+|+++....+++.+|++||.++++++|++..+..+. +.++..++++++. |.++++|||
T Consensus 88 l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV 167 (568)
T PRK07449 88 YPAVIEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPV 167 (568)
T ss_pred hHHHHHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCE
Confidence 99999999999999999999999999999999999999999999766665443 2344444444444 788999999
Q ss_pred EEEcccchhhhccCCCCCC-CC--CCCCCCC---CCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHh
Q 040733 223 LIDIPVDVQLELAVPNWNQ-PC--KLPSCIS---SLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLT 296 (643)
Q Consensus 223 ~i~iP~Dv~~~~~~~~~~~-~~--~~p~~~~---~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~l 296 (643)
||+||.|++..+....... +. ....... ..+..+++..+++++++|++ |||+|++|+|+..+.+++.+|+|++
T Consensus 168 ~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~~~~~l~~lae~~ 246 (568)
T PRK07449 168 HINCPFREPLYPDDDDDTGSPWLAPLGDWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAEEGQAIAALAQLL 246 (568)
T ss_pred EEeCCCCCCCCCCCcccccccccccccccccccccccccCccccchhhhhhhcc-CCeEEEECCCChHHHHHHHHHHHHC
Confidence 9999999865433211000 00 0000000 00122456778999999998 9999999999987679999999999
Q ss_pred CCceeecCCCCCCCCCCCCCcccccCCC-CcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccC
Q 040733 297 GIPVTCTTMGLGLFPCTDELCLRMVGMF-GTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGK 375 (643)
Q Consensus 297 g~PV~tt~~gkg~~~~~hpl~lG~~g~~-~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~ 375 (643)
|+||++|++||+.+|++||+++|++|.. +...++++++++|+||++|+++.+..+..|.. ....++||||+|+.++++
T Consensus 247 g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~-~~~~~~i~id~d~~~~~~ 325 (568)
T PRK07449 247 GWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLA-DCEPEYWVVDPGPGRLDP 325 (568)
T ss_pred CCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHh-cCCCCEEEECCCCCcCCC
Confidence 9999999999999999999999998754 56667788999999999999986554433321 123489999999999999
Q ss_pred CCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc--cCCCCCCCHHHHHHHHHhcCCCCCeE
Q 040733 376 VKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY--KTFGEEIPPQYAIQILNELTDDEETI 453 (643)
Q Consensus 376 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~L~~~l~~~d~i 453 (643)
++..++.|.+|++.+|++ ... . ....|.+++...++++.... ....+++++..+++.|++.+++ +.+
T Consensus 326 ~~~~~~~i~~d~~~~l~~-~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-~~i 394 (568)
T PRK07449 326 AHHATRRLTASVATWLEA-HPA---E------KRKPWLQEWQALNEKAREAVREQLAEDTFTEAKVAAALADLLPE-GGQ 394 (568)
T ss_pred CCCceEEEEEcHHHHHHh-ccc---c------cchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhCCC-CCe
Confidence 999999999999999988 211 1 12356665544333221100 0123569999999999999999 888
Q ss_pred EEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEE
Q 040733 454 ISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533 (643)
Q Consensus 454 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~i 533 (643)
|+.|.|++..|..+++....+.+++.+.++++|||++|+|||++++ |+++||+|+|||||+|+++||+|++||++|+++
T Consensus 395 v~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-~~~~vv~i~GDGsf~~~~~eL~Ta~r~~l~i~i 473 (568)
T PRK07449 395 LFVGNSLPVRDVDAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-SAKPTVALIGDLSFLHDLNGLLLLKQVPAPLTI 473 (568)
T ss_pred EEEECcHHHHHHHHccCcCCCceEEecCCccchhhHHHHHHHHHhc-CCCCEEEEechHHhhcCcHHHHhhcccCCCeEE
Confidence 8889999988998898888888999998899999999999999999 899999999999999999999999999999999
Q ss_pred EEEeCCCchhhHHH---HHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 534 LLINNQYLGMNVEY---EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 534 vV~NN~~~g~~~~~---q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
||+||++|++++.. |...+..+ .+++ ...+||+++|++||+++++|++++||+++|+++++.++|+||
T Consensus 474 vVlNN~g~~~~~~~~~~~~~~~~~~----~~~~-----~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~p~lI 544 (568)
T PRK07449 474 VVVNNNGGGIFSLLPQPEEEPVFER----FFGT-----PHGVDFAHAAAMYGLEYHRPETWAELEEALADALPTPGLTVI 544 (568)
T ss_pred EEEECCCCccccCCCCCCCcchhhH----hhcC-----CCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 99999999976433 11111111 1111 246899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCc
Q 040733 611 DVMVSYQEHV 620 (643)
Q Consensus 611 eV~v~~~~~~ 620 (643)
||.+++.+..
T Consensus 545 ev~id~~~~~ 554 (568)
T PRK07449 545 EVKTNRSQGA 554 (568)
T ss_pred EEeCChhhhH
Confidence 9999877643
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-84 Score=800.51 Aligned_cols=547 Identities=20% Similarity=0.221 Sum_probs=437.2
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEE
Q 040733 58 TDFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVC 136 (643)
Q Consensus 58 ~~~~~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~ 136 (643)
+.|.+++. +.+..++++|++.|+++||++|||+||+++++|++++.+.+ |++|.+|||++|+|||+||||+|||||||
T Consensus 290 ~~~~~~~~-~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~ 368 (1655)
T PLN02980 290 SNFLKDYA-NINAVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVV 368 (1655)
T ss_pred hhHhHhCC-CHHHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEE
Confidence 33444443 34467999999999999999999999999999999997655 99999999999999999999999999999
Q ss_pred EEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcH------HHHHHHH
Q 040733 137 LVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDI------PRIIKEA 210 (643)
Q Consensus 137 ~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i------~~~l~~A 210 (643)
++|+|||++|+++||++|+.+++|||+||||+|.+.++++++|++||..+|+++|||++++.+++++ ++.+++|
T Consensus 369 i~TsGPG~tN~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A 448 (1655)
T PLN02980 369 ITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSA 448 (1655)
T ss_pred EEeCcHHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999983 5899999
Q ss_pred HHHhhcCCCCeEEEEcccchhhhccCCCCC-----------CC-CCCCCCC--CC-CCCCCCHHHHHHHHHHHHhCCCcE
Q 040733 211 FFIATSGRPGPVLIDIPVDVQLELAVPNWN-----------QP-CKLPSCI--SS-LPKEPDELALRQTLKLIVESKNPV 275 (643)
Q Consensus 211 ~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~~-----------~~-~~~p~~~--~~-~~~~~~~~~i~~~~~~L~~AkrPv 275 (643)
++.|+++|+|||||+||.|.+.......+. .. .....+. .. ..+.++.+.+++++++|.+||||+
T Consensus 449 ~~~A~s~rpGPVhL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkRPv 528 (1655)
T PLN02980 449 VHWATSSPCGPVHINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAKRGL 528 (1655)
T ss_pred HHHHhCCCCCCEEEECccCCccccccccccccccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCCCcE
Confidence 999999999999999997643322111110 00 0000000 00 011246678999999999999999
Q ss_pred EEEcCCchh-hHHHHHHHHHHhCCceeecCCC-C------CCCCC--CCCCcccccCCCCcHHHHHhhhcCCEEEEecCc
Q 040733 276 LCVGGGCLN-SSEELRKFVGLTGIPVTCTTMG-L------GLFPC--TDELCLRMVGMFGTVYANYAVNECDLLLAAGVR 345 (643)
Q Consensus 276 Il~G~g~~~-~~~~l~~lae~lg~PV~tt~~g-k------g~~~~--~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~ 345 (643)
||+|+|+.. ...++.+|||++||||++|+++ + |+||+ +||+++|++|.......+..+.++|+||+||++
T Consensus 529 IvaG~G~~~~~a~~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl~iG~r 608 (1655)
T PLN02980 529 LLIGAIHTEDDIWAALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQIGSR 608 (1655)
T ss_pred EEEcCCCchHHHHHHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEEEeCCc
Confidence 999999862 2335689999999999999864 5 99999 899999988752222245567899999999999
Q ss_pred cCc-cccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 040733 346 FNE-RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424 (643)
Q Consensus 346 ~~~-~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~ 424 (643)
++. +.++.+..+.+ .++||||+|+.++++++..++.|++|++.+|+.|.+.+.. .....|.+++...+....
T Consensus 609 l~s~~~t~~~~~~~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~------~~~~~w~~~~~~~~~~~~ 681 (1655)
T PLN02980 609 ITSKRVSQMLEKCFP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFP------RRRSKWHGHLQALDGMVA 681 (1655)
T ss_pred cccHHHHHHHHhCCC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCc------chhHHHHHHHHHHHHHHH
Confidence 863 44444332333 4699999999999999999999999999999988653221 112357666655443221
Q ss_pred Cc--cc-CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChh----HHHHHHhcc-----------ccCCCeEEe-cCCCcc
Q 040733 425 FS--YK-TFGEEIPPQYAIQILNELTDDEETIISTGVGQH----QMWAIQFYM-----------YKRARQLLT-SSGFGS 485 (643)
Q Consensus 425 ~~--~~-~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~----~~~~~~~~~-----------~~~p~~~~~-~~~~g~ 485 (643)
.. .. ....++++.++++.|++.+|+ |.+|+.|+|++ .+|+.++++ .+.|++++. ++++|+
T Consensus 682 ~~~~~~~~~~~~l~~~~v~~~L~~~Lp~-d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~ 760 (1655)
T PLN02980 682 QEISFQIHAESSLTEPYVAHVISEALTS-DSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGA 760 (1655)
T ss_pred HHHHhhhhcCCCcchHHHHHHHHHhCCC-CCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCc
Confidence 00 00 112358899999999999999 99999988764 467655443 467788885 789999
Q ss_pred ccc--chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHh--CCCeEEEEEeCCCchhhHHHHHHhhcccc-cccc
Q 040733 486 MGF--GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAE--NIPVKILLINNQYLGMNVEYEDRYFEANR-ANSF 560 (643)
Q Consensus 486 mG~--glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~--~lpv~ivV~NN~~~g~~~~~q~~~~~~~~-~~~~ 560 (643)
||+ ++|+|||++++. +++||+|+|||||+|++|||+|++|+ ++|++|||+||++|||+++++......+. ....
T Consensus 761 mG~~G~lpaAIGaala~-~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~ 839 (1655)
T PLN02980 761 SGIDGLLSTAIGFAVGC-NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQY 839 (1655)
T ss_pred cchhhhHHHHHHHhhcC-CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHH
Confidence 999 599999999998 89999999999999999999999984 99999999999999999865321100000 0111
Q ss_pred cCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 561 LGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 561 ~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
+++ ...+||.++|++||+++++|++++||+++|+++++.++|+||||.++++++
T Consensus 840 ~~~-----~~~~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~~~~~p~lIEV~t~~~~~ 893 (1655)
T PLN02980 840 FYT-----SHDISIENLCLAHGVRHLHVGTKSELEDALFTSQVEQMDCVVEVESSIDAN 893 (1655)
T ss_pred hcC-----CCCCCHHHHHHHcCCceeecCCHHHHHHHHHHhhccCCCEEEEEecChhhh
Confidence 222 245899999999999999999999999999999999999999999998764
|
|
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-82 Score=622.73 Aligned_cols=545 Identities=30% Similarity=0.488 Sum_probs=480.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N 146 (643)
.|..-|+-+..|++.||+..||+||..+.|++.+|.+.| |+.|+.||-.+|.+||+||.|+. |..|||+.||||..+.
T Consensus 3 kmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagtd 82 (592)
T COG3960 3 KMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (592)
T ss_pred chhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCccc
Confidence 467788899999999999999999999999999999998 99999999999999999999997 7899999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
.++|++.|+.|++|+|.||||.|+....+..||.+|...+.+|++||..++..|..+|.++++||++.+|+|||||.|++
T Consensus 83 mitglysa~adsipilcitgqaprarl~kedfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvlidl 162 (592)
T COG3960 83 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDL 162 (592)
T ss_pred hhhhhhhcccccccEEEecCCCchhhhchhhhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|+|..++..+.+....+|.+. +.....+.++++.+|.+|+||+|++|+|.. ++.+.+.+|+|.+|+||+.|+
T Consensus 163 p~dvq~aeiefd~d~yepl~~~k----paatr~qaekalaml~~aerplivagggiinadaa~l~~efael~gvpviptl 238 (592)
T COG3960 163 PFDVQVAEIEFDPDMYEPLPVYK----PAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTL 238 (592)
T ss_pred ccceEEEEEecCccccCcCCcCC----chhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHHHcCCcccchh
Confidence 99999988754333323344333 224567888999999999999999999997 578889999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCC-CcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDELCLRMVGMF-GTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~-~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
||-|++|++||+..||.|.. ++.+.|..+..+|+|+-+|.|+..+.|++.+.+.+..++||+|++|..||+.+.+|+.|
T Consensus 239 mgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanrhtgsv~vyt~gr~fihvdieptqigrvf~pdlgi 318 (592)
T COG3960 239 MGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGI 318 (592)
T ss_pred ccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhcccCceeeeecCceEEEEeccccccceeecCccce
Confidence 99999999999999999866 45788888999999999999999999999888888899999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCC-CCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGV-GFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|.+++|+.+++...+-+. .....++.|.+++++.|+.....-.-..-++.|+++++++++.+++ |...++-+|.++
T Consensus 319 vsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~fgr-d~~yvstiglsq 397 (592)
T COG3960 319 VSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGR-DVCYVTTIGLSQ 397 (592)
T ss_pred eechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhcCC-ceeEEEeccHHH
Confidence 99999999999876544322 1245678899999887654432111124589999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
..+++|+...+|+.|+.++..|.+||.+|+|+|...|.|+|.||++.||-.|+|-+.||+...++++|.+.||+||..+|
T Consensus 398 ia~aqflhv~~pr~wincgqagplgwtipaalgv~~adp~r~vvalsgdydfqfmieelavgaq~k~pyihv~vnnaylg 477 (592)
T COG3960 398 IAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIPYIHVLVNNAYLG 477 (592)
T ss_pred HhhhhhhhhcCCcceeecCccCCcccccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhcccCceEEEEecchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccccccc-ccC--CCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeC
Q 040733 543 MNVEYEDRYFEANRANS-FLG--DPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVS 615 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~-~~g--~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~ 615 (643)
.++|.|+.+- -++.-. .|. +-.......+|..+++|++||+.+||.+++|+..+++++. ++.-|+++|+++.
T Consensus 478 lirqaqr~f~-mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~~p~e~a~af~~a~~lm~eh~vpvvve~ile 556 (592)
T COG3960 478 LIRQAQRAFD-MDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQHRVPVVVEVILE 556 (592)
T ss_pred HHHHHHhcCC-ccceeeehhhccCCccccccCccceeehhccCceeEEecChHHhhHHHHHHHHHHHhcCCCeeeehHHH
Confidence 9999887542 222111 010 1111234567999999999999999999999999999865 3678999999997
Q ss_pred CCCC
Q 040733 616 YQEH 619 (643)
Q Consensus 616 ~~~~ 619 (643)
+-.+
T Consensus 557 rvtn 560 (592)
T COG3960 557 RVTN 560 (592)
T ss_pred Hhhc
Confidence 6543
|
|
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-79 Score=638.84 Aligned_cols=521 Identities=21% Similarity=0.330 Sum_probs=434.3
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
++++.+++|+++|.+.||+++||+||+.+++|+|.+...+ +|||.|.||.+|+||||||||++| .+++++|.|+|.+.
T Consensus 2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~G-i~alvTTfGVGELS 80 (557)
T COG3961 2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG-ISALVTTFGVGELS 80 (557)
T ss_pred CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcC-ceEEEEecccchhh
Confidence 4679999999999999999999999999999999999987 999999999999999999999999 89999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCC--C---c---cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCC
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAF--Q---E---IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGR 218 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~--Q---~---~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~ 218 (643)
+++||+++|++++|||+|+|-.++..+.++.+ + + ..+.+|.++++.....+++.++.++.|+++++.+...+
T Consensus 81 A~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~ 160 (557)
T COG3961 81 ALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQR 160 (557)
T ss_pred hhcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999888776554421 1 1 13678999999999999888888888888888888765
Q ss_pred CCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHh
Q 040733 219 PGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLT 296 (643)
Q Consensus 219 ~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~l 296 (643)
.||||.+|.|+...++.... .|...+...+ -+....+.++.++++|+++|||+|++|..+. +..+++.+|++++
T Consensus 161 -RPvYI~lP~dva~~~~~~p~-~Pl~~~~~~s--d~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t 236 (557)
T COG3961 161 -RPVYIGLPADVADLPIEAPL-TPLDLQLKTS--DPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINAT 236 (557)
T ss_pred -CCeEEEcchHHhcCcCCCCC-CccccccCCC--CHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhc
Confidence 79999999999988775431 1211111000 0011235678889999999999999999876 7889999999999
Q ss_pred CCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccC
Q 040733 297 GIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGK 375 (643)
Q Consensus 297 g~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~ 375 (643)
++|+++++||||+|+|.||.|+|.| |..+.+.+.++++.||+||.+|+.+.|+.|+.|+.-.+..++|+++.+...+..
T Consensus 237 ~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~~ 316 (557)
T COG3961 237 GFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIKD 316 (557)
T ss_pred CCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEecc
Confidence 9999999999999999999999997 888999999999999999999999999999998876667899999999988877
Q ss_pred CCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC-CcccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 376 VKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP-FSYKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 376 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
.....+.+ +.+|+.|.+.++.+....... +.....+ ..++....+++..++++.+..++.+ +.+|
T Consensus 317 ~~f~~l~m----~~~L~~L~~~i~~~~~~~~~~---------~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl~p-~dvi 382 (557)
T COG3961 317 AVFTNLSM----KDALQELAKKIDKRNLSAPPV---------AYPARTPPTPYPPANEPLTQEWLWNTVQNFLKP-GDVI 382 (557)
T ss_pred cccCCeeH----HHHHHHHHHHhhhcccCCCCc---------cCCCCCCCCCCCCCCCcccHHHHHHHHHhhCCC-CCEE
Confidence 66666554 889999988887654311100 0001111 1133446789999999999999988 6666
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
++|.|.+ .++..-..+++..+++.+.-||++||++|+|+|+++|.|+|+||+++|||||+||+||+.|..|++++++|+
T Consensus 383 iaetGtS-~FG~~~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStmiR~gl~p~if 461 (557)
T COG3961 383 IAETGTS-FFGALDIRLPKGATFISQPLWGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIF 461 (557)
T ss_pred EEccccc-cccceeeecCCCCeEEcccchhhcccccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHHHHcCCCcEEE
Confidence 7888887 455555678888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC---E-EEeCChhHHHHHHHHHHh-CCCcEE
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP---A-ARVTKKKDVRAAIQLMLE-TPGPYL 609 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~---~-~~V~~~~eL~~al~~al~-~~gp~l 609 (643)
|+||+||-+.+..-. ....++ +...|||.+|.++||+. . .++++.++|..+++.+.+ .+++.+
T Consensus 462 vlNN~GYTIEr~IHg----~~~~YN--------dI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l 529 (557)
T COG3961 462 VLNNDGYTIERAIHG----PTAPYN--------DIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFANNDRIRL 529 (557)
T ss_pred EEcCCCcEEEehhcC----CCcCcc--------cccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcCCCceEE
Confidence 999999999765432 111112 24679999999999984 2 678999999999999886 568999
Q ss_pred EEEEeCCCCCc
Q 040733 610 LDVMVSYQEHV 620 (643)
Q Consensus 610 IeV~v~~~~~~ 620 (643)
|||+++..|-+
T Consensus 530 IEv~lp~~D~P 540 (557)
T COG3961 530 IEVMLPVLDAP 540 (557)
T ss_pred EEEecCcccCC
Confidence 99999987743
|
|
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-74 Score=627.48 Aligned_cols=416 Identities=18% Similarity=0.180 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHH
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTG 150 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~g 150 (643)
.+++|++.|+++||+||||+||+++++|+++|.+. +|++|.+|||++|+||||||||+|||||||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 47999999999999999999999999999999765 49999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCc------HHHHHHHHHHHhhcCCCCeEEE
Q 040733 151 LMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDD------IPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 151 l~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~------i~~~l~~A~~~A~s~~~GPV~i 224 (643)
|++|+.+++|||+|+||+++...+++.+|++||.++|+++|||++++.++++ +++.+++|++.|.++++|||||
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHI 161 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred EcccchhhhccCCCCCCCC----CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCc
Q 040733 225 DIPVDVQLELAVPNWNQPC----KLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIP 299 (643)
Q Consensus 225 ~iP~Dv~~~~~~~~~~~~~----~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~P 299 (643)
+||.|++..+.+....... ..+... .....++++.+++++++|.+||||+|++|+|+. .+.+++.+|+|++|+|
T Consensus 162 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~P 240 (432)
T TIGR00173 162 NVPFREPLYPDPLLQPLQPWLRSGVPTVT-TGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWP 240 (432)
T ss_pred eCCCCCCCCCCCccccccccccccccccc-CCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCe
Confidence 9999997544310000000 000110 111225677899999999999999999999987 4678999999999999
Q ss_pred eeecCCCCCCCCCCCCCcccccC-CCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCC
Q 040733 300 VTCTTMGLGLFPCTDELCLRMVG-MFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKL 378 (643)
Q Consensus 300 V~tt~~gkg~~~~~hpl~lG~~g-~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~ 378 (643)
|++|++|||.+ ++| +++|+++ ..++..+++++ ++|+||+||++++++.+..+ .+.++.++||||+|+.++++++.
T Consensus 241 V~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~~-~~~~~~~~i~vd~d~~~~~~~~~ 316 (432)
T TIGR00173 241 LLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQW-LARQPAEYWVVDPDPGWLDPSHH 316 (432)
T ss_pred EEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHHH-HhCCCCcEEEECCCCCccCCCCC
Confidence 99999999999 779 9999874 66677777778 99999999999987765444 23345789999999999999999
Q ss_pred CCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCC
Q 040733 379 PDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGV 458 (643)
Q Consensus 379 ~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~ 458 (643)
.++.|++|++.+|++|++.++.. .......|.+...+.+...... ..+.+++|.++++.|++.+|+ |.+|+.|+
T Consensus 317 ~~~~i~~D~~~~l~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~p~~~~~~l~~~lp~-d~ivv~d~ 390 (432)
T TIGR00173 317 ATTRLEASPAEFAEALAGLLKNP---DAAWLDRWLEAEAKAREALREV--LAEEPLSELSLARALSQLLPE-GAALFVGN 390 (432)
T ss_pred ceEEEEECHHHHHHHhhhccCCC---ChHHHHHHHHHHHHHHHHHHHH--hccCCccHHHHHHHHHHhCCC-CCeEEEEC
Confidence 99999999999999998776431 0111233433333222211111 113469999999999999999 99999999
Q ss_pred ChhHHHHHHhcccc-CCCeEEecCCCcccccchHHHHHHHH
Q 040733 459 GQHQMWAIQFYMYK-RARQLLTSSGFGSMGFGLPAAMGAAV 498 (643)
Q Consensus 459 G~~~~~~~~~~~~~-~p~~~~~~~~~g~mG~glpaAiGaal 498 (643)
|++..|..+|+..+ .|+++++++++|+||+|||+|||+++
T Consensus 391 g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 391 SMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred CHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 99999999999887 79999999999999999999999986
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-71 Score=573.64 Aligned_cols=520 Identities=22% Similarity=0.313 Sum_probs=426.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+++.+++|+++|.+.||++|||+||+.++.|+|-|++.+ +|++.|+||.+|+||||||||+.| .++|++|.|+|.+.+
T Consensus 3 ~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~G-i~a~VtTfgVGeLSA 81 (561)
T KOG1184|consen 3 PITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKG-IGACVTTFGVGELSA 81 (561)
T ss_pred ceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcC-ceEEEEEeccchhhh
Confidence 578999999999999999999999999999999999987 999999999999999999999999 899999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCC--Cc---c---CHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAF--QE---I---PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~--Q~---~---d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++|+++||++++|||+|+|-.++..++++.. ++ - -+.+|++.++.++.-+.+.++.++.|++|++.|....
T Consensus 82 lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~- 160 (561)
T KOG1184|consen 82 LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKES- 160 (561)
T ss_pred hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhc-
Confidence 9999999999999999999988877766532 11 1 2578999999999999999999999999999998654
Q ss_pred CeEEEEcccchhhhccCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHH
Q 040733 220 GPVLIDIPVDVQLELAVPNW--NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGL 295 (643)
Q Consensus 220 GPV~i~iP~Dv~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~ 295 (643)
.||||.||.|+...+++... +.+..++.+.. .+....+.++.+++++..+++|+|++|.-++ +..++..+|+++
T Consensus 161 rPVYi~iP~n~~~~~~~~~~l~~~p~~~~~~~s--~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~~~ 238 (561)
T KOG1184|consen 161 KPVYIGVPANLADLPVPAFGLLPVPLDLSPKPS--NKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELADA 238 (561)
T ss_pred CCeEEEeecccccCcCCcccCCCCCcccCCCCC--cHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHHHh
Confidence 79999999998876653211 11111111100 0112346778889999999999999999776 677889999999
Q ss_pred hCCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCccccc
Q 040733 296 TGIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 296 lg~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~ 374 (643)
++.|++.|+||||.++|+||+|.|++ |..+.+...+.++.+|++|.+|..++++.++.|....++.++++++.|...+.
T Consensus 239 ~~~p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~~~k~~~~i~~~~d~v~i~ 318 (561)
T KOG1184|consen 239 TGFPVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSYLYKKKNAIEFHSDRVKIR 318 (561)
T ss_pred hCCCeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEeecCccceEEEecceEEec
Confidence 99999999999999999999999997 88888999999999999999999999999998886667889999999988776
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC-cccCCCCCCCHHHHHHHHHhcCCCCCeE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF-SYKTFGEEIPPQYAIQILNELTDDEETI 453 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~L~~~l~~~d~i 453 (643)
......+ +++.+|+.|++.++....... . ......+.+. .......++...+++..++.++.+ ..+
T Consensus 319 ~~~f~~v----~mk~~l~~Lak~I~~~~~~~~----~----y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~-~d~ 385 (561)
T KOG1184|consen 319 NATFGGV----LMKDFLQELAKRIKKNKTSYE----N----YVRIPVPEPKPLACPPNAPLRQEWMWNHIQKFLSS-GDV 385 (561)
T ss_pred cccccce----eHHHHHHHHHHhhcccccchh----c----ccccCCCCCCCCCCCCcchhhHHHHHHHHHhhcCC-Cce
Confidence 5333333 569999999988876543211 0 0000000000 011234568999999999999988 556
Q ss_pred EEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEE
Q 040733 454 ISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533 (643)
Q Consensus 454 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~i 533 (643)
+.+++|.+. ++.+-+.++....+.+...||++||++|+++|++.|.|+++||+|+|||||++++||++|+.|.++|.+|
T Consensus 386 v~~ETG~S~-F~~~~~~fP~g~~~~~q~~wgsIG~svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStmir~gl~~~i 464 (561)
T KOG1184|consen 386 VIAETGDSW-FGINQTKFPKGCGYESQMQWGSIGWSVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTMIRWGLKPII 464 (561)
T ss_pred EEEecccce-ecceeeccccccceEEEEEEeeccccchhhhhhhhccCCceEEEEecCccceeeHHHHHHHHhcCCCcEE
Confidence 667777763 4455567788888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCC-----CEEEeCChhHHHHHHHHHH--hCCC
Q 040733 534 LLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI-----PAARVTKKKDVRAAIQLML--ETPG 606 (643)
Q Consensus 534 vV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~eL~~al~~al--~~~g 606 (643)
+|+||+||-+.+.... . .++ ...++||.++.++||. +..++.+-+|+.++++.+. +.++
T Consensus 465 f~~NN~GYTIE~~IH~----~--~Yn--------~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~~~~~ 530 (561)
T KOG1184|consen 465 FLINNGGYTIEVEIHD----G--PYN--------DIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFEKNDK 530 (561)
T ss_pred EEEeCCceEEEEeecC----C--Ccc--------ccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhcccCc
Confidence 9999999988653221 0 011 2356999999999986 4568889999999999887 3678
Q ss_pred cEEEEEEeCCCCCc
Q 040733 607 PYLLDVMVSYQEHV 620 (643)
Q Consensus 607 p~lIeV~v~~~~~~ 620 (643)
+.+|||+++.+|.+
T Consensus 531 i~liEv~l~~~D~p 544 (561)
T KOG1184|consen 531 IRLIEVILPVDDAP 544 (561)
T ss_pred eEEEEEecCcccCh
Confidence 99999999887743
|
|
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-70 Score=554.54 Aligned_cols=554 Identities=23% Similarity=0.277 Sum_probs=456.2
Q ss_pred CCCCcHHHHHHHHHHHCC---------CCEEEEccC-CCcHHHHHHHhhCC--CeEEecCChhHHHHHHHHHHHHhCC--
Q 040733 67 DKPRKGADIIVEALERQG---------VTTVFAYPG-GASIEIHQSLTRSN--IRSILPRHEQGGIFAAEGYARSSGT-- 132 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~G---------V~~vFg~PG-~~~~~l~~al~~~~--i~~i~~~hE~~A~~~A~Gyar~sg~-- 132 (643)
+..+|.+++|++.|.+.= |.-||.+-| +.+..|=++|.... +.....+|||+-+++|.+|+|...|
T Consensus 4 TvRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr 83 (617)
T COG3962 4 TVRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRR 83 (617)
T ss_pred eehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhce
Confidence 345789999999998653 234788888 56788999998864 9999999999999999999999964
Q ss_pred cEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC------CCCCc--cCHHHHhhccceeeeEeCCcCcHH
Q 040733 133 PGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT------DAFQE--IPVVEVTRYMTKHNYLVLDVDDIP 204 (643)
Q Consensus 133 ~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~------~~~Q~--~d~~~~~~~~tk~~~~v~~~~~i~ 204 (643)
.-+|..+.|||++|++++-+-|..+++|||+|-||+=-..+-. ..|.+ +...+.|+|++||.-+|++||++.
T Consensus 84 ~~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~ 163 (617)
T COG3962 84 IYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLM 163 (617)
T ss_pred eeEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHH
Confidence 5677778899999999999999999999999999864322111 11222 223568999999999999999999
Q ss_pred HHHHHHHHHhhcC-CCCeEEEEcccchhhhccCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCc
Q 040733 205 RIIKEAFFIATSG-RPGPVLIDIPVDVQLELAVPNWNQPCKLP-SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGC 282 (643)
Q Consensus 205 ~~l~~A~~~A~s~-~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~ 282 (643)
..+.+|++..+.+ .-|||.|.+|.|||.+..+ |+....-+ -+..+ .+.|++..++.++++|+.+|||+|++|+|+
T Consensus 164 sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA~D--yp~~FF~~rv~~~r-R~~Pd~~eL~~A~~lik~ak~PlIvaGGGv 240 (617)
T COG3962 164 SALPRAMRVMTDPADCGPVTLALCQDVQAEAYD--YPESFFEKRVWRIR-RPPPDERELADAAALIKSAKKPLIVAGGGV 240 (617)
T ss_pred HHHHHHHHHhCChhhcCceEEEechhhhhhhcC--CcHHhhhhhhhhcc-CCCCCHHHHHHHHHHHHhcCCCEEEecCce
Confidence 9999999998753 3499999999999987553 22221111 11111 245899999999999999999999999999
Q ss_pred h--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcccccc-C
Q 040733 283 L--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA-T 359 (643)
Q Consensus 283 ~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~ 359 (643)
. ++.++|++|+|..|+||++|-.|||.++.+||+++|.+|..|+..+|.+.++|||||.||+|+.+++|+++..|. +
T Consensus 241 ~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~~A~~ADlVigiGTR~~DFTTgS~alF~~~ 320 (617)
T COG3962 241 LYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFKNP 320 (617)
T ss_pred eechHHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHhhhhhcCEEEEecccccccccccHHHhcCC
Confidence 8 788999999999999999999999999999999999999999999999999999999999999999999988875 7
Q ss_pred CceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc-----cCC--CC
Q 040733 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY-----KTF--GE 432 (643)
Q Consensus 360 ~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-----~~~--~~ 432 (643)
..|++.|+.-+..-.|. ....+++|++..|++|.+.|..-.. ...|.++....+..|..+. ... ..
T Consensus 321 ~~k~l~lNV~~~da~K~--~a~~lvaDAr~~L~~L~~~L~g~~~-----~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt 393 (617)
T COG3962 321 GVKFLNLNVQPFDAYKH--DALPLVADARAGLEALSEALGGYRT-----AAGWTDERERLKAAWDAEADAPTAKNHFLNT 393 (617)
T ss_pred CceEEEeeccccccccc--ccceehhHHHHHHHHHHHHhccccc-----chhHHHHHHHhhhhhhhhccccccccccccc
Confidence 78999999888765553 6788999999999999999886432 2468888777665554311 111 12
Q ss_pred CCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc
Q 040733 433 EIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG 512 (643)
Q Consensus 433 ~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG 512 (643)
..+...++-.+++..++ |.+|++..|.--.-..++|+...|..|....+|.+|||-+..++|+|+|.|+|.|++++|||
T Consensus 394 ~ptq~~vigav~~~~~~-~svvvcAAGsLPGdLhkLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~pdreV~vmVGDG 472 (617)
T COG3962 394 LPTQTQVIGAVQRTISD-DSVVVCAAGSLPGDLHKLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAAEPDREVYVMVGDG 472 (617)
T ss_pred CccchhHHHHHHhhcCC-CcEEEEeCCCCcHHHHHHhccCCCCceeeeecccccccccccccccccCCCCCeEEEEEccc
Confidence 34566889999999998 77777777765445567788889999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCC-CCCCCCCHHHHHhHCCCCEEEeCCh
Q 040733 513 SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLR-KSEIFPDMLKFAEACGIPAARVTKK 591 (643)
Q Consensus 513 sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~-~~~~~~d~~~lA~a~G~~~~~V~~~ 591 (643)
||+|--.||.|++.++..++|++++|.|||.|..+|....+..+. +.+-+-.+ .....+||++.|++||++.++|.+.
T Consensus 473 SymMlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~-~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~~i 551 (617)
T COG3962 473 SYMMLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFN-NLLRDTDHEEEILQVDFAAHAESYGAKAYKVGTI 551 (617)
T ss_pred chhhhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhh-hhhhhhcccCCCCcccHHHHHhhcCceeEecCCH
Confidence 999999999999999999999999999999999999765443332 11211111 2356789999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCCCccccccccc
Q 040733 592 KDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILE 636 (643)
Q Consensus 592 ~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~~~~~~~~~~~ 636 (643)
+||+.+|+++.++.+.+||++.+++ .++...++.|||+...
T Consensus 552 ~eL~aAL~~Ak~~~~ttvi~I~t~P----~~~t~~g~~WWdV~V~ 592 (617)
T COG3962 552 EELEAALADAKASDRTTVIVIDTDP----KTTTDDGGSWWDVAVP 592 (617)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCC----ccccCCCCceeecccc
Confidence 9999999999999999999999976 3566778999997654
|
|
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=494.96 Aligned_cols=524 Identities=19% Similarity=0.216 Sum_probs=404.0
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
..+...+..+++.|.++||++++.+||+++.||.-++.+.+ |+++...+|++|+|+|.|.||++++|.+++||||.+++
T Consensus 5 ~~nt~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~A 84 (566)
T COG1165 5 NPNTLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVA 84 (566)
T ss_pred chhHHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhh
Confidence 34568999999999999999999999999999999999986 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCc-------HHHHHHHHHHHhhcCC
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDD-------IPRIIKEAFFIATSGR 218 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~-------i~~~l~~A~~~A~s~~ 218 (643)
|++++|.||...++|+||+|+|+|.+++++++.|.+||..+|.++.+|+..+..|++ +..+-.+++..|++..
T Consensus 85 Nl~PAViEA~~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~~~ 164 (566)
T COG1165 85 NLYPAVIEANLSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPH 164 (566)
T ss_pred hccHHHHhhhhcCCceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999987764 4445556667777788
Q ss_pred CCeEEEEcccchhhhccCCCC-C-CC--CCCCCCCCCC-CCCCC--HHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHH
Q 040733 219 PGPVLIDIPVDVQLELAVPNW-N-QP--CKLPSCISSL-PKEPD--ELALRQTLKLIVESKNPVLCVGGGCLNSSEELRK 291 (643)
Q Consensus 219 ~GPV~i~iP~Dv~~~~~~~~~-~-~~--~~~p~~~~~~-~~~~~--~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~ 291 (643)
+||||||+|++.+.-+..... . .+ .++..+.... +..-+ .+.+.+ .+. ..+||++||+|.-.....+++.+
T Consensus 165 ~GpVHiN~PfrePL~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~rgviv~G~~~~~e~~~i~~ 242 (566)
T COG1165 165 AGPVHINVPFREPLVPDLEPEGAGTPWGRPLGHWWFYTGPWTVDQGPDLLSE-WFF-WRQKRGVIVAGRMSAQEGKGILA 242 (566)
T ss_pred CCceEecCCCCccCCCCCCccccccccccccCchhhcCCceeeecccccccc-hhh-hcccCceEEEecCchhhhHHHHH
Confidence 999999999997654331110 0 00 0111110000 00000 112222 333 35799999999966666667999
Q ss_pred HHHHhCCceeecCC-CCCCC-CCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccC---CceEEEE
Q 040733 292 FVGLTGIPVTCTTM-GLGLF-PCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT---RAKIVHI 366 (643)
Q Consensus 292 lae~lg~PV~tt~~-gkg~~-~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~---~~~iI~I 366 (643)
+++.+|||+++.+. +.+.. +. ..+++ .+..+.+-+.. |.||.||.++ +++...+|.. ..+.+.|
T Consensus 243 ~a~~lg~PilaDplS~lr~~i~~-yD~~L------~~~~~~~~L~~-d~VI~fG~~~---~SK~l~qwl~~~~~~~~~vv 311 (566)
T COG1165 243 LANTLGWPILADPLSPLRNYIPC-YDLWL------ANPKAAEKLRP-DIVIQFGSPP---TSKRLLQWLADTEPIEYWVV 311 (566)
T ss_pred HHHHhCCceecccccccCCCccc-chhhh------cCchhhhhcCc-cEEEEeCCCc---ccHHHHHHHhccCCCcEEEE
Confidence 99999999999864 33322 11 11222 22233333334 9999999997 5566666654 3578999
Q ss_pred cCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc-c-CCCCCCCHHHHHHHHH
Q 040733 367 DIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY-K-TFGEEIPPQYAIQILN 444 (643)
Q Consensus 367 d~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~L~ 444 (643)
|..+..++..+..+..+.+|+..+++.+..... .++.|.+++....++..... . ..+..+....+...|.
T Consensus 312 d~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~Wl~~~~~~~~~~~~~v~~~~~~~~~~e~~~a~~l~ 383 (566)
T COG1165 312 DPGGGWLDPSHHATTRLSADVATWARSIHPAGR--------IRKPWLDEWLALNEKARQAVRDQLAAEALTEAHLAAALA 383 (566)
T ss_pred cCCCCcCCcccccceEEEeehhHhHHHhccccc--------cccHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHH
Confidence 999999999888888899999999876643211 03477777665544332110 0 1122788899999999
Q ss_pred hcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHH
Q 040733 445 ELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAI 524 (643)
Q Consensus 445 ~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta 524 (643)
+.+|+ +..++.+.++..-+...++....+.+.+++.|-..|-..+++|+|++.+. .+++|+++||.||+|+++.|...
T Consensus 384 ~~lp~-~~~LFvgNSmpVRdvd~~~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a~-~~ptv~liGDLS~lhD~NgLl~~ 461 (566)
T COG1165 384 DLLPP-QDQLFVGNSMPVRDVDALGQLPAGYRVYSNRGASGIDGTVSTALGIARAT-QKPTVALIGDLSFLHDLNGLLLL 461 (566)
T ss_pred HhCCC-CCeEEEecCchhhhHHHhccCccCceeecCCCccccchhHHHHhhhhhhc-CCceEEEEechhhhhccchHhhc
Confidence 99998 55555455555445555555556777887766544444899999999987 67899999999999999999999
Q ss_pred HHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC
Q 040733 525 KAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET 604 (643)
Q Consensus 525 ~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~ 604 (643)
.+...|.+|||+||+|+|||.+++...... .....||+| +..||+.+|+.||+++.++.+++||+++++++...
T Consensus 462 k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~-~fe~~F~tP-----h~ldF~~la~~y~l~y~~~~s~~~l~~~~~~~~~~ 535 (566)
T COG1165 462 KKVPQPLTIVVVNNNGGGIFSLLPQAQSEP-VFERLFGTP-----HGLDFAHLAATYGLEYHRPQSWDELGEALDQAWRR 535 (566)
T ss_pred CCCCCCeEEEEEeCCCceeeeeccCCCCcc-hHHHhcCCC-----CCCCHHHHHHHhCccccccCcHHHHHHHHhhhccC
Confidence 999999999999999999999987654332 334567775 78999999999999999999999999999999988
Q ss_pred CCcEEEEEEeCCCCC
Q 040733 605 PGPYLLDVMVSYQEH 619 (643)
Q Consensus 605 ~gp~lIeV~v~~~~~ 619 (643)
.|..||||++++++.
T Consensus 536 ~g~~viEvkt~r~~~ 550 (566)
T COG1165 536 SGTTVIEVKTDRSDG 550 (566)
T ss_pred CCcEEEEEecChhHH
Confidence 999999999998764
|
|
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=332.41 Aligned_cols=162 Identities=38% Similarity=0.581 Sum_probs=156.5
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
+++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||+|++|||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 589999999999999999999999999999999874 5999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
|+++|+.|++|||+|+|+.++...+++.+|++||.++++++|||++++.+++++++.+++||+.|+++ +|||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 159 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAK-RGVAVLILPGD 159 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999995 59999999999
Q ss_pred hhhh
Q 040733 230 VQLE 233 (643)
Q Consensus 230 v~~~ 233 (643)
++.+
T Consensus 160 v~~~ 163 (164)
T cd07039 160 VQDA 163 (164)
T ss_pred Hhcc
Confidence 9864
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=320.62 Aligned_cols=154 Identities=29% Similarity=0.463 Sum_probs=149.9
Q ss_pred HHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH
Q 040733 75 IIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD 153 (643)
Q Consensus 75 ~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~ 153 (643)
+|++.|+++||++|||+||+++++|+++|.++ +|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++||++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 68999999999999999999999999999765 59999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCc------HHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 154 AYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDD------IPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 154 A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~------i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
|+.+++|||+|+|+.++...+++.+|++||..+++++|||+.++.++++ +++.+++|++.|.++|||||||+||
T Consensus 82 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 82 AYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred HHhcCCCEEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 9999999999999999998899999999999999999999999999999 9999999999999999999999999
Q ss_pred c
Q 040733 228 V 228 (643)
Q Consensus 228 ~ 228 (643)
.
T Consensus 162 ~ 162 (162)
T cd07037 162 F 162 (162)
T ss_pred C
Confidence 4
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=315.08 Aligned_cols=167 Identities=49% Similarity=0.771 Sum_probs=157.8
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
||++|+|++.|+++||++|||+||+.+.+|+++|.+++ |++|.+|||++|++||+||+|++|||+||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 68999999999999999999999999999999999995 99999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCC-ccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQ-EIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q-~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++|++|+.+++|||+|+|+++....+++.+| +.||..++++++||++++.+++++++.+++|++.|.++++|||||+||
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred HHHhhcccceeeEEEEecccchhhhcccccccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cchhhhccC
Q 040733 228 VDVQLELAV 236 (643)
Q Consensus 228 ~Dv~~~~~~ 236 (643)
.|++.++++
T Consensus 161 ~dv~~~~~~ 169 (172)
T PF02776_consen 161 QDVQEAEVD 169 (172)
T ss_dssp HHHHTSEEE
T ss_pred hhHhhCccC
Confidence 999998763
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=312.83 Aligned_cols=187 Identities=26% Similarity=0.357 Sum_probs=163.9
Q ss_pred CCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecC
Q 040733 432 EEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGD 511 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GD 511 (643)
.+++++++++.|++.+++ |.||+.|+|++.+|+.++++.++|++|+.++++|+|||++|+|||+++|+|+++||+|+||
T Consensus 6 ~~l~~~~~~~~l~~~l~~-d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GD 84 (202)
T cd02006 6 VPIKPQRVYEEMNKAFGR-DVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGD 84 (202)
T ss_pred CCcCHHHHHHHHHhhCCC-CeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeC
Confidence 469999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCC--CCCCCCCCCCHHHHHhHCCCCEEEeC
Q 040733 512 GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGD--PLRKSEIFPDMLKFAEACGIPAARVT 589 (643)
Q Consensus 512 Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~--p~~~~~~~~d~~~lA~a~G~~~~~V~ 589 (643)
|||+|++|||+|++||++|+++||+||++|++++++|...++.......+.. ........+||+++|++||+++.+|+
T Consensus 85 G~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~ 164 (202)
T cd02006 85 YDFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT 164 (202)
T ss_pred hHhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEEC
Confidence 9999999999999999999999999999999999988765432111110000 00011235899999999999999999
Q ss_pred ChhHHHHHHHHHHh----CCCcEEEEEEeCCCCC
Q 040733 590 KKKDVRAAIQLMLE----TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 590 ~~~eL~~al~~al~----~~gp~lIeV~v~~~~~ 619 (643)
+++||+++|+++++ .++|+||||++++.++
T Consensus 165 ~~~el~~al~~a~~~~~~~~~p~liev~i~~~~~ 198 (202)
T cd02006 165 KPEELAAAFEQAKKLMAEHRVPVVVEAILERVTN 198 (202)
T ss_pred CHHHHHHHHHHHHHhcccCCCcEEEEEEeccccc
Confidence 99999999999985 7899999999998774
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=309.69 Aligned_cols=178 Identities=24% Similarity=0.434 Sum_probs=164.7
Q ss_pred CCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecC
Q 040733 432 EEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGD 511 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GD 511 (643)
+++++.++++.|++.+++ |.+|+.|+|++..|..++++.++|++|+.++++|+|||++|+|||+++|.|+++||+|+||
T Consensus 2 ~~l~~~~~~~~l~~~l~~-~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GD 80 (196)
T cd02013 2 NPMHPRQVLRELEKAMPE-DAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGD 80 (196)
T ss_pred CCCCHHHHHHHHHHHCCC-CEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcc
Confidence 468999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCCh
Q 040733 512 GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKK 591 (643)
Q Consensus 512 Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~ 591 (643)
|+|+|+++||+|+++|++|+++||+||++|+++++.|...|+.+..... ...+||+++|++||+++++|+++
T Consensus 81 G~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~--------~~~~d~~~lA~a~G~~~~~v~~~ 152 (196)
T cd02013 81 GAWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTE--------LESESFAKIAEACGAKGITVDKP 152 (196)
T ss_pred hHHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCccccc--------CCCCCHHHHHHHCCCEEEEECCH
Confidence 9999999999999999999999999999999999888766654433221 24589999999999999999999
Q ss_pred hHHHHHHHHHHh---CCCcEEEEEEeCCCC
Q 040733 592 KDVRAAIQLMLE---TPGPYLLDVMVSYQE 618 (643)
Q Consensus 592 ~eL~~al~~al~---~~gp~lIeV~v~~~~ 618 (643)
+||+++|+++++ .++|+||||++++++
T Consensus 153 ~el~~al~~a~~~~~~~~p~liev~v~~~~ 182 (196)
T cd02013 153 EDVGPALQKAIAMMAEGKTTVIEIVCDQEL 182 (196)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEEeCccc
Confidence 999999999998 899999999998876
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=298.12 Aligned_cols=153 Identities=24% Similarity=0.412 Sum_probs=143.4
Q ss_pred HHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 040733 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLM 152 (643)
Q Consensus 74 ~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~ 152 (643)
|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+|||+||+|+| +|+||++|+|||++|+++||+
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~ 79 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA 79 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH
Confidence 579999999999999999999999999999776 599999999999999999999999 799999999999999999999
Q ss_pred HhhhCCCCEEEEeCCCcccccCCCCC-------Ccc-CHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 153 DAYSDSIPILAITGQVSQKLLGTDAF-------QEI-PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 153 ~A~~~~vPvlvItg~~~~~~~g~~~~-------Q~~-d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
+|+.|++|||+|+|++++...+++.+ |+. ||.++++++|||++++.+++++++.+++||+.|.+++ |||||
T Consensus 80 ~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~-gPV~l 158 (162)
T cd07038 80 GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYI 158 (162)
T ss_pred HHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCC-CCEEE
Confidence 99999999999999999887777542 333 6899999999999999999999999999999999997 99999
Q ss_pred Eccc
Q 040733 225 DIPV 228 (643)
Q Consensus 225 ~iP~ 228 (643)
+||.
T Consensus 159 ~iP~ 162 (162)
T cd07038 159 EIPR 162 (162)
T ss_pred EccC
Confidence 9994
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=300.22 Aligned_cols=184 Identities=49% Similarity=0.832 Sum_probs=166.3
Q ss_pred CCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc
Q 040733 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513 (643)
Q Consensus 434 i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs 513 (643)
++|.++++.|++.+++ |.+++.|+|++..|..++++.++|++|+.++++|+|||++|+|||++++.|+++||+++|||+
T Consensus 1 ~~~~~~~~~l~~~l~~-~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~ 79 (186)
T cd02015 1 IKPQEVIKELSELTPG-DAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGS 79 (186)
T ss_pred CCHHHHHHHHHhhCCC-CeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccH
Confidence 4688999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH
Q 040733 514 FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD 593 (643)
Q Consensus 514 f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e 593 (643)
|+|+++||+|+++|++|+++||+||++|+++++.|...+.++..... ....+||+++|++||+++++|++.+|
T Consensus 80 f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~~~~a~a~G~~~~~v~~~~e 152 (186)
T cd02015 80 FQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTT-------LDSNPDFVKLAEAYGIKGLRVEKPEE 152 (186)
T ss_pred HhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeecc-------CCCCCCHHHHHHHCCCceEEeCCHHH
Confidence 99999999999999999999999999999999888766554332211 12458999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeCCCCCcccccC
Q 040733 594 VRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625 (643)
Q Consensus 594 L~~al~~al~~~gp~lIeV~v~~~~~~~p~~~ 625 (643)
|+++|+++++.++|+||||+++++++..|+.+
T Consensus 153 l~~al~~a~~~~~p~liev~~~~~~~~~~~~~ 184 (186)
T cd02015 153 LEAALKEALASDGPVLLDVLVDPEENVLPMVP 184 (186)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCcccCCcCC
Confidence 99999999999999999999998876655544
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=294.48 Aligned_cols=174 Identities=29% Similarity=0.511 Sum_probs=158.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcccc
Q 040733 436 PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFI 515 (643)
Q Consensus 436 ~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~ 515 (643)
|+++++.|++.+++ +.++++|+|++..|..++++..++++|+.++++|+|||++|+|+|+++++|+++||+|+|||||+
T Consensus 1 p~~~~~~l~~~l~~-~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~ 79 (177)
T cd02010 1 PQRIVHDLRAVMGD-DDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFM 79 (177)
T ss_pred CHHHHHHHHHHCCC-CcEEEecCcHHHHHHHHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHH
Confidence 35789999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHH
Q 040733 516 MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595 (643)
Q Consensus 516 m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~ 595 (643)
|+++||+|++||++|+++||+||++|+++++.|...+. +..... ...+||+++|++||+++++|++++||+
T Consensus 80 m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~-~~~~~~--------~~~~d~~~~a~a~G~~~~~v~~~~el~ 150 (177)
T cd02010 80 MNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYG-RDSGVD--------FGNPDFVKYAESFGAKGYRIESADDLL 150 (177)
T ss_pred hHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcC-CcccCc--------CCCCCHHHHHHHCCCEEEEECCHHHHH
Confidence 99999999999999999999999999999877765442 222221 245899999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 596 AAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 596 ~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
++|+++++.++|.||||++++.++
T Consensus 151 ~al~~a~~~~~p~liev~~~~~~~ 174 (177)
T cd02010 151 PVLERALAADGVHVIDCPVDYSEN 174 (177)
T ss_pred HHHHHHHhCCCCEEEEEEeccccc
Confidence 999999999999999999987653
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=330.80 Aligned_cols=492 Identities=13% Similarity=0.097 Sum_probs=309.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC---C-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS---N-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.|+|.+++++.+.+.|++.++||||+...++++.|.+. + +.+++..+|.+|..||.|-+.+..| ++.+|+|||+
T Consensus 4 ~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~aG~r--a~t~ts~~Gl 81 (595)
T TIGR03336 4 LLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLR--AFCTMKHVGL 81 (595)
T ss_pred eecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhcCcc--eEEEccCCch
Confidence 57999999999999999999999999999999999763 3 8899999999999999999987666 4457899999
Q ss_pred HHHHHHHHHhh--hCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCe
Q 040733 145 TNIMTGLMDAY--SDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 145 ~N~~~gl~~A~--~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GP 221 (643)
.=+.-.|..+. .-..|+|++.+++|.....+...++ .++.-.+.|- +...+++++-+...+||++|..-+ =|
T Consensus 82 ~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~~~~~q~d----~~~~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~-~P 156 (595)
T TIGR03336 82 NVAADPLMTLAYTGVKGGLVVVVADDPSMHSSQNEQDT----RHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFG-LP 156 (595)
T ss_pred hhhHHHhhhhhhhcCcCceEEEEccCCCCccchhhHhH----HHHHHhcCCeEECCCCHHHHHHHHHHHHHHHHHHC-CC
Confidence 76666665554 3467899999988765422222221 1233334433 335667788899999999998754 79
Q ss_pred EEEEcccchhhh--ccC-CCCCCCCCCCCCC---CCCCCCCC-----H----HHHHHHHHHHHhCCCc--------EEEE
Q 040733 222 VLIDIPVDVQLE--LAV-PNWNQPCKLPSCI---SSLPKEPD-----E----LALRQTLKLIVESKNP--------VLCV 278 (643)
Q Consensus 222 V~i~iP~Dv~~~--~~~-~~~~~~~~~p~~~---~~~~~~~~-----~----~~i~~~~~~L~~AkrP--------vIl~ 278 (643)
|.+..-..+-.. .+. +..+.......+. .+....+. . +.++++.+...+.+-. ++|+
T Consensus 157 V~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv 236 (595)
T TIGR03336 157 VILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVI 236 (595)
T ss_pred EEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEE
Confidence 988874433211 110 0000000000000 00000011 1 1222222222221111 3333
Q ss_pred cCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcccccc
Q 040733 279 GGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358 (643)
Q Consensus 279 G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~ 358 (643)
..|.. .....+.++++|+.+- ++ .+..+-..-.....+++++.+.||++-....- .......+.
T Consensus 237 ~~G~~--~~~a~ea~~~~Gi~~~-------v~------~~~~i~Pld~~~i~~~~~~~~~vivvEe~~~~-~~~~~~~~~ 300 (595)
T TIGR03336 237 ASGIA--YNYVKEALERLGVDVS-------VL------KIGFTYPVPEGLVEEFLSGVEEVLVVEELEPV-VEEQVKALA 300 (595)
T ss_pred EcCHH--HHHHHHHHHHcCCCeE-------EE------EeCCCCCCCHHHHHHHHhcCCeEEEEeCCccH-HHHHHHHHH
Confidence 33332 2223333444465431 11 11111122334456788899999999765421 111111111
Q ss_pred CC--ceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCH
Q 040733 359 TR--AKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPP 436 (643)
Q Consensus 359 ~~--~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~ 436 (643)
.+ .++.++......+. ....=|.....+.|.+. .... ..... .......+.+.+..+..+..
T Consensus 301 ~~~~~~v~~~G~~d~fi~------~~~~Ld~~~i~~~i~~~-~~~~---~~~~~------~~~~~~~~~r~~~~C~GCp~ 364 (595)
T TIGR03336 301 GTAGLNIKVHGKEDGFLP------REGELNPDIVVNALAKF-GLAP---SVTHE------KPVPKPLPVRPPSLCAGCPH 364 (595)
T ss_pred HhcCCCeEEecccCCccC------cccCcCHHHHHHHHHHh-CCCc---ccccc------cccccccCCCCCCCCCCCCC
Confidence 11 13444433221111 11112556666665432 2110 00000 00001123233456788999
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccC
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM 516 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m 516 (643)
..+++.|++.+++ |.+++.|+|++..|.. .|..++.+ +++||+++|+|+|++++.|+++||+++|||+|+|
T Consensus 365 ~~~~~~l~~~l~~-d~ivv~D~G~~~~~~~------~p~~~~~~--~~~mG~~~~~AiGa~~a~p~~~Vv~i~GDG~f~~ 435 (595)
T TIGR03336 365 RATFYAMKKVADR-EAIFPSDIGCYTLGIQ------PPLGTVDT--TLCMGASIGVASGLSKAGEKQRIVAFIGDSTFFH 435 (595)
T ss_pred hHHHHHHHHhccC-CcEEecCcchhhcccc------CCccccce--eeccCchHHHHhhhhhcCCCCCEEEEeccchhhh
Confidence 9999999999998 9999999999877642 24455443 4899999999999999999999999999999999
Q ss_pred C-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH--
Q 040733 517 N-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD-- 593 (643)
Q Consensus 517 ~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e-- 593 (643)
+ ++||+|++++++|+++||+||++|||+++++...++. ...+ .....+||+++|++||+++++|.++++
T Consensus 436 ~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~----~~~~----~~~~~~d~~~ia~a~G~~~~~v~~~~~l~ 507 (595)
T TIGR03336 436 TGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGV----TGMG----EATKEISIEELCRASGVEFVEVVDPLNVK 507 (595)
T ss_pred cCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCC----CCCC----CcCCCcCHHHHHHHcCCCEEEEeCcCCHH
Confidence 7 9999999999999999999999999987543211110 1111 123468999999999999999998855
Q ss_pred -HHHHHHHHHhCCCcEEEEEEeCC
Q 040733 594 -VRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 594 -L~~al~~al~~~gp~lIeV~v~~ 616 (643)
+.++|+++++.+||.||++..+-
T Consensus 508 ~l~~al~~a~~~~gp~li~v~~~C 531 (595)
T TIGR03336 508 ETIEVFKAALAAEGVSVIIAKQPC 531 (595)
T ss_pred HHHHHHHHHHhcCCCEEEEEcccC
Confidence 58899999999999999997643
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=296.71 Aligned_cols=190 Identities=19% Similarity=0.260 Sum_probs=163.3
Q ss_pred HHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC
Q 040733 438 YAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN 517 (643)
Q Consensus 438 ~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~ 517 (643)
++++.|++.+++ |.+++.|+|++..|..++++.++|++|+.++++|+|||++|+|||++++.|+++||+|+|||+|+|+
T Consensus 3 ~~~~~l~~~l~~-~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~ 81 (205)
T cd02003 3 EVLGALNEAIGD-DDVVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLML 81 (205)
T ss_pred hHHHHHHHhCCC-CCEEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhcc
Confidence 578999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCC------CCCCCCCCHHHHHhHCCCCEEEeCCh
Q 040733 518 LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPL------RKSEIFPDMLKFAEACGIPAARVTKK 591 (643)
Q Consensus 518 ~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~------~~~~~~~d~~~lA~a~G~~~~~V~~~ 591 (643)
.+||+|+++|++|+++||+||++|+|++++|...+..... ..+.... ......+||.++|++||+++.+|+++
T Consensus 82 ~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~ 160 (205)
T cd02003 82 HSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFG-TEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTI 160 (205)
T ss_pred HHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcccc-chhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCH
Confidence 9999999999999999999999999999988754432211 1110000 00124589999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCCCcccccc
Q 040733 592 KDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDT 633 (643)
Q Consensus 592 ~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~~~~~~~~ 633 (643)
+||+++|+++++.++|+||||.+++.+ ..|....|++.
T Consensus 161 ~el~~al~~a~~~~gp~lIeV~v~~~~----~~~~~~~~~~~ 198 (205)
T cd02003 161 EELKAALAKAKASDRTTVIVIKTDPKS----MTPGYGSWWDV 198 (205)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeeccc----cCCCCCCeEeC
Confidence 999999999999999999999998765 23555556654
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=280.01 Aligned_cols=172 Identities=26% Similarity=0.344 Sum_probs=156.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcccc
Q 040733 436 PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFI 515 (643)
Q Consensus 436 ~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~ 515 (643)
|+++++.|++.+++ |.++++|+|++..|+.++++.+.|++++.++++|+||+++|+|||++++.|+++||+++|||+|+
T Consensus 1 p~~~~~~l~~~l~~-~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~ 79 (172)
T cd02004 1 PYRVLHELQEALPD-DAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFG 79 (172)
T ss_pred CHHHHHHHHHHCCC-CcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhc
Confidence 46789999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHH
Q 040733 516 MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595 (643)
Q Consensus 516 m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~ 595 (643)
|+++||+|++++++|+++||+||++|+++++.|...+...... ......+||.++|++||+++.+|++.+||+
T Consensus 80 ~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~~~la~a~G~~~~~v~~~~el~ 152 (172)
T cd02004 80 FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPV-------TTLLPDTRYDLVAEAFGGKGELVTTPEELK 152 (172)
T ss_pred CCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCce-------eccCCCCCHHHHHHHCCCeEEEECCHHHHH
Confidence 9999999999999999999999999999998887654222111 112356899999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeC
Q 040733 596 AAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 596 ~al~~al~~~gp~lIeV~v~ 615 (643)
++|+++++.++|.||||+++
T Consensus 153 ~al~~a~~~~~p~liev~i~ 172 (172)
T cd02004 153 PALKRALASGKPALINVIID 172 (172)
T ss_pred HHHHHHHHcCCCEEEEEEcC
Confidence 99999999999999999985
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=279.16 Aligned_cols=175 Identities=30% Similarity=0.460 Sum_probs=159.8
Q ss_pred CCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc
Q 040733 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513 (643)
Q Consensus 434 i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs 513 (643)
+++..+++.|++.+++ +.++++|+|++..|+.++++.+++++|+.++++|+|||++|+|+|+++++|+++||+|+||||
T Consensus 2 ~~~~~~~~~l~~~~~~-~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~ 80 (178)
T cd02014 2 IHPERVAAELNKRAPD-DAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGG 80 (178)
T ss_pred CCHHHHHHHHHhHCCC-CeEEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchH
Confidence 6889999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH
Q 040733 514 FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD 593 (643)
Q Consensus 514 f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e 593 (643)
|+|+++||+|++++++|+++||+||++|+|+++.|...+ ...... ....+||.++|++||++++++++++|
T Consensus 81 f~~~~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~-~~~~~~--------~~~~~d~~~la~a~G~~~~~v~~~~e 151 (178)
T cd02014 81 FAMLMGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMG-QPEFGV--------DLPNPDFAKIAEAMGIKGIRVEDPDE 151 (178)
T ss_pred HHhhHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhc-CCceec--------cCCCCCHHHHHHHCCCeEEEeCCHHH
Confidence 999999999999999999999999999999987775433 111111 12468999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 594 VRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 594 L~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
|+++|+++++.++|+||||++++++
T Consensus 152 l~~~l~~a~~~~~p~liev~~~~~~ 176 (178)
T cd02014 152 LEAALDEALAADGPVVIDVVTDPNE 176 (178)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCC
Confidence 9999999999999999999998765
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=283.23 Aligned_cols=173 Identities=21% Similarity=0.260 Sum_probs=152.7
Q ss_pred CHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccc-cCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc
Q 040733 435 PPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMY-KRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513 (643)
Q Consensus 435 ~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~-~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs 513 (643)
+...+++.|++.+|+ |.+|+.|+|++..|..++++. ++|++|+.+.++|+||+++|+|||+++|. +++||+|+||||
T Consensus 2 ~~~~~~~~l~~~l~~-~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-~~~Vv~i~GDGs 79 (175)
T cd02009 2 TEPALARALPDHLPE-GSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-DKPTVLLTGDLS 79 (175)
T ss_pred chHHHHHHHHHhCCC-CCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhcC-CCCEEEEEehHH
Confidence 345789999999999 999999999999999999998 88999999999999999999999999998 999999999999
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH
Q 040733 514 FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD 593 (643)
Q Consensus 514 f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e 593 (643)
|+|++|||+|++||++|+++||+||++|+++++.|...+...+ ...+.. ...+||.++|++||+++++|++++|
T Consensus 80 f~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~-~~~~~~-----~~~~d~~~lA~a~G~~~~~v~~~~e 153 (175)
T cd02009 80 FLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEF-ERLFGT-----PQGLDFEHLAKAYGLEYRRVSSLDE 153 (175)
T ss_pred HHHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchh-hhhhcC-----CCCCCHHHHHHHcCCCeeeCCCHHH
Confidence 9999999999999999999999999999998766542221111 111111 1358999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeC
Q 040733 594 VRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 594 L~~al~~al~~~gp~lIeV~v~ 615 (643)
|+++|+++++.++|+||||.++
T Consensus 154 l~~al~~a~~~~~p~lIev~v~ 175 (175)
T cd02009 154 LEQALESALAQDGPHVIEVKTD 175 (175)
T ss_pred HHHHHHHHHhCCCCEEEEEeCC
Confidence 9999999999999999999985
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=274.25 Aligned_cols=155 Identities=54% Similarity=0.845 Sum_probs=150.1
Q ss_pred HHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH
Q 040733 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD 153 (643)
Q Consensus 74 ~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~ 153 (643)
|+|++.|+++||+++||+||+.+++|++++.+.++++|.++||.+|++||+||+|++||++||++|+|||++|+++++.+
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~ 80 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN 80 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999985559999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 154 AYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 154 A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
|+.+++|||+|+|+++....+++.+|+.|+.++++++|||++++.+++++.+.+++|++.|.++|+|||||+||.
T Consensus 81 A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 81 AYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHhhCCCEEEEeCCCccccccCCcccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 999999999999999999989889999999999999999999999999999999999999999989999999984
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=295.37 Aligned_cols=327 Identities=24% Similarity=0.346 Sum_probs=237.0
Q ss_pred CCCEEEEccCCCcHHHHHHHhh-CC-CeEEecCChhHHHHHHHHHHHHhCCcE-EEEEccchh-hHHHHHHHHHhhhCCC
Q 040733 84 GVTTVFAYPGGASIEIHQSLTR-SN-IRSILPRHEQGGIFAAEGYARSSGTPG-VCLVSSGPG-VTNIMTGLMDAYSDSI 159 (643)
Q Consensus 84 GV~~vFg~PG~~~~~l~~al~~-~~-i~~i~~~hE~~A~~~A~Gyar~sg~~g-v~~~t~GpG-~~N~~~gl~~A~~~~v 159 (643)
||++++|+|.+...+|++.+.+ .+ +++|.+.||..|+.+|.||+.+||+.+ |.+-.||.| +.|.++.|++...-++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 7999999999999999999984 43 999999999999999999999977655 455688888 8888888888899999
Q ss_pred CEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchhhhccCCCC
Q 040733 160 PILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNW 239 (643)
Q Consensus 160 PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~ 239 (643)
|||+|.|.+... ...+.+|...+..+|+ .+| +. ++||..+.....
T Consensus 81 P~l~~i~~RG~~-----g~~depqh~~~G~~t~------------~lL----~~----------~~i~~~~~~~~~---- 125 (361)
T TIGR03297 81 PLLLIVGWRGEP-----GVHDEPQHVKQGRITL------------SLL----DA----------LEIPWEVLSTDN---- 125 (361)
T ss_pred CeeEEEecCCCC-----CCCCCchhhHHhHHHH------------HHH----HH----------cCCCEEECCCCh----
Confidence 999999965432 2122244444433331 111 11 134444332100
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE-EcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcc
Q 040733 240 NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLC-VGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCL 318 (643)
Q Consensus 240 ~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl-~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~l 318 (643)
....+.++++.+...+.++|+.+ +..+. |.. +.+
T Consensus 126 ---------------~~~~~~~~~a~~~~~~~~~p~a~l~~~~~---------------------------~~~-~~~-- 160 (361)
T TIGR03297 126 ---------------DEALAQIERALAHALATSRPYALVVRKGT---------------------------FAS-YKL-- 160 (361)
T ss_pred ---------------HHHHHHHHHHHHHHHHHCCCEEEEEcccc---------------------------ccc-ccc--
Confidence 01344566666666666666543 22211 100 000
Q ss_pred cccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 319 RMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 319 G~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+.
T Consensus 161 -----------------------------------------~~------------------------------------- 162 (361)
T TIGR03297 161 -----------------------------------------KG------------------------------------- 162 (361)
T ss_pred -----------------------------------------cc-------------------------------------
Confidence 00
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhcccc-C----
Q 040733 399 ESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYK-R---- 473 (643)
Q Consensus 399 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~-~---- 473 (643)
.. . ......+++..+++.+.+.+++ +.+|++|+|.... .++... .
T Consensus 163 ~~-----~---------------------~~~~~~~~r~~ai~~i~~~l~~-~~iVV~~~G~~s~---el~~~~~~~~~~ 212 (361)
T TIGR03297 163 EP-----A---------------------NPLPTLMTREEAIAAILDHLPD-NTVIVSTTGKTSR---ELYELRDRIGQG 212 (361)
T ss_pred CC-----C---------------------CCCcCCCCHHHHHHHHHHhCCC-CCEEEECCCCCcH---HHHHhhcccccC
Confidence 00 0 0001137778889999999998 8888899997542 223322 2
Q ss_pred -CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCC-CeEEEEEeCCCchhhHHHHHHh
Q 040733 474 -ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENI-PVKILLINNQYLGMNVEYEDRY 551 (643)
Q Consensus 474 -p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~l-pv~ivV~NN~~~g~~~~~q~~~ 551 (643)
+++|++ +|+||+++|+|+|++++.|+++||+|+|||+|+|+++||+|+.++++ |+++||+||++|+++..
T Consensus 213 ~~~~f~~---~GsMG~a~p~AlG~ala~p~r~Vv~i~GDGsflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~----- 284 (361)
T TIGR03297 213 HARDFLT---VGSMGHASQIALGLALARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAHDSVGG----- 284 (361)
T ss_pred CCCceEe---echhhhHHHHHHHHHHHCCCCCEEEEEChHHHHHHHHHHHHHHHhCCCCeEEEEEcCccccccCC-----
Confidence 567775 38999999999999999999999999999999999999999999996 89999999999986531
Q ss_pred hcccccccccCCCCCCCCCCCCHHHHHhHCCC-CEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 552 FEANRANSFLGDPLRKSEIFPDMLKFAEACGI-PAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 552 ~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~-~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
.. + ....+||.++|++||. .+++|++.+||+++++++++.+||.||||+++++..
T Consensus 285 ---q~--~--------~~~~~d~~~iA~a~G~~~~~~v~~~~eL~~al~~a~~~~gp~lIeV~v~~g~~ 340 (361)
T TIGR03297 285 ---QP--T--------VSQHLDFAQIAKACGYAKVYEVSTLEELETALTAASSANGPRLIEVKVRPGSR 340 (361)
T ss_pred ---cC--C--------CCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHHhCCCcEEEEEEecCCCc
Confidence 00 0 1245899999999997 689999999999999999999999999999998763
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=275.05 Aligned_cols=174 Identities=22% Similarity=0.308 Sum_probs=155.8
Q ss_pred CCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc
Q 040733 433 EIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG 512 (643)
Q Consensus 433 ~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG 512 (643)
++++..+++.|++.+++ |.+++.|+|++. |..+++...++++|+.++++|+||+++|+|+|++++.|+++||+++|||
T Consensus 1 ~l~~~~~~~~l~~~l~~-~~iiv~d~g~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG 78 (183)
T cd02005 1 PLTQARLWQQVQNFLKP-NDILVAETGTSW-FGALDLKLPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDG 78 (183)
T ss_pred CCCHHHHHHHHHHhcCC-CCEEEECCchHH-HhhhhccCCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCc
Confidence 47889999999999999 999999999985 7888999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCC----CCEEEe
Q 040733 513 SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACG----IPAARV 588 (643)
Q Consensus 513 sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G----~~~~~V 588 (643)
+|+|+++||+|+++|++|+++||+||++|++++..+.. +.... ....+||.++|++|| +++.+|
T Consensus 79 ~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~----~~~~~--------~~~~~d~~~ia~a~G~~~~~~~~~v 146 (183)
T cd02005 79 SFQMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGP----EASYN--------DIANWNYTKLPEVFGGGGGGLSFRV 146 (183)
T ss_pred hhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccC----CcCcc--------cCCCCCHHHHHHHhCCCccccEEEe
Confidence 99999999999999999999999999999998755421 11111 123589999999999 799999
Q ss_pred CChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 040733 589 TKKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 589 ~~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~ 620 (643)
++.+||+++|+++++ .++|+||||.+++.++.
T Consensus 147 ~~~~el~~al~~a~~~~~~p~liev~~~~~~~~ 179 (183)
T cd02005 147 KTEGELDEALKDALFNRDKLSLIEVILPKDDAP 179 (183)
T ss_pred cCHHHHHHHHHHHHhcCCCcEEEEEEcCcccCC
Confidence 999999999999998 89999999999887643
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=267.05 Aligned_cols=177 Identities=29% Similarity=0.424 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc
Q 040733 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513 (643)
Q Consensus 434 i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs 513 (643)
++|.++++.|++.+++ +.+++.|+|++..|..++++.++|++++.+++ |+||+++|+|+|+++|.|+++||+++|||+
T Consensus 1 ~~~~~~~~~l~~~l~~-~~~iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG~ 78 (178)
T cd02002 1 LTPEYLAAALAAALPE-DAIIVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDGS 78 (178)
T ss_pred CCHHHHHHHHHhhCCC-CeEEEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCch
Confidence 4788999999999999 99999999999999999999989999999988 999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccc-cccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChh
Q 040733 514 FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRAN-SFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK 592 (643)
Q Consensus 514 f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~-~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~ 592 (643)
|+|+.+||+|++++++|+++||+||++|++++++|...++..... ..... ......+||.++|++||+++++|++++
T Consensus 79 f~~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~a~a~G~~~~~v~~~~ 156 (178)
T cd02002 79 FMYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGL--DLLDPGIDFAAIAKAFGVEAERVETPE 156 (178)
T ss_pred hhccHHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCccccccccc--ccCCCCCCHHHHHHHcCCceEEeCCHH
Confidence 999999999999999999999999999999998887655421000 00000 011245899999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEe
Q 040733 593 DVRAAIQLMLETPGPYLLDVMV 614 (643)
Q Consensus 593 eL~~al~~al~~~gp~lIeV~v 614 (643)
||+++++++++.++|.||||++
T Consensus 157 el~~al~~a~~~~~p~vi~v~v 178 (178)
T cd02002 157 ELDEALREALAEGGPALIEVVV 178 (178)
T ss_pred HHHHHHHHHHhCCCCEEEEEEC
Confidence 9999999999999999999975
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=260.15 Aligned_cols=151 Identities=43% Similarity=0.659 Sum_probs=137.4
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++.+|..++++..+|++|+.+.++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 1 D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~ 80 (153)
T PF02775_consen 1 DIGCHTMWAAQYLRVRRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVL 80 (153)
T ss_dssp -SSHHHHHHHHHSCCSSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEE
T ss_pred CcChhHHHHHHhcCcCCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCCh--hHHHHHHHHHHhCCCcEEEEE
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKK--KDVRAAIQLMLETPGPYLLDV 612 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~--~eL~~al~~al~~~gp~lIeV 612 (643)
||++|++++..|...+..+...... .....+||.++|++||+++++|++. +||+++|+++++.+||+||||
T Consensus 81 nN~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 81 NNGGYGMTGGQQTPFGGGRFSGVDG-----KTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp ESSBSHHHHHHHHHTTSTCHHSTBT-----TTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred eCCcceEeccccccCcCcccccccc-----cccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 9999999999988877654433220 0146789999999999999999999 999999999999999999998
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-31 Score=258.38 Aligned_cols=162 Identities=25% Similarity=0.437 Sum_probs=140.3
Q ss_pred CCCCHHHHHHHHHhcCCCCCeEEEeCCCh--hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe
Q 040733 432 EEIPPQYAIQILNELTDDEETIISTGVGQ--HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID 509 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~~d~iv~~d~G~--~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~ 509 (643)
-.++.+++++.|++.+++ +.+|++|+|+ +..|..+ ..+++++ .+|+|||++|+|+|+++|+|+++||+|+
T Consensus 11 ~~~~~~~~i~~l~~~l~~-~~~iv~D~G~~~~~~~~~~----~~~~~~~---~~GsMG~glpaAiGaalA~p~r~Vv~i~ 82 (202)
T PRK06163 11 KVMNRFDLTCRLVAKLKD-EEAVIGGIGNTNFDLWAAG----QRPQNFY---MLGSMGLAFPIALGVALAQPKRRVIALE 82 (202)
T ss_pred CCcCHHHHHHHHHHhcCC-CCEEEECCCccHHHHHHhh----cCCCCeE---eecccccHHHHHHHHHHhCCCCeEEEEE
Confidence 568899999999999998 7788899997 5688765 2455666 3799999999999999999999999999
Q ss_pred cCccccCCHHHHHHHHHh-CCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC-EEE
Q 040733 510 GDGSFIMNLQELAAIKAE-NIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP-AAR 587 (643)
Q Consensus 510 GDGsf~m~~~eL~Ta~~~-~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~-~~~ 587 (643)
|||||+|+++||+|++++ ++|+++||+||++||+... + . .. ....+||+++|++||++ +++
T Consensus 83 GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~-~------~----~~------~~~~~Df~~lA~a~G~~~~~~ 145 (202)
T PRK06163 83 GDGSLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGG-Q------P----TL------TSQTVDVVAIARGAGLENSHW 145 (202)
T ss_pred cchHHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCC-c------c----CC------CCCCCCHHHHHHHCCCceEEE
Confidence 999999999999999987 6899999999999997521 0 0 00 12458999999999998 789
Q ss_pred eCChhHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 588 VTKKKDVRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 588 V~~~~eL~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
|++.+||+++|+++++.++|.||||++++..
T Consensus 146 v~~~~el~~al~~a~~~~~p~lIeV~i~~~~ 176 (202)
T PRK06163 146 AADEAHFEALVDQALSGPGPSFIAVRIDDKP 176 (202)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 9999999999999999999999999998765
|
|
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=252.44 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh----C-CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTR----S-NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~----~-~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
|+|+|++.|+++||+++||+||+.+++++++|.+ . +|++|.+|||++|++||+||+|.+++ ||++|+|||++|
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n 78 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR--AMTATSGPGLNL 78 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc--EEEeeCcchHHH
Confidence 5799999999999999999999999999999974 3 49999999999999999999998776 999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccC--CCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLG--TDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g--~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
++++|++|+.+++|||+|+|+++....+ ...+|++|+..++++ +||++++.+++++++.+++||+.|.+++ |||+|
T Consensus 79 ~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~-~Pv~l 156 (160)
T cd07034 79 MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYR-LPVIV 156 (160)
T ss_pred HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 9999999999999999999999988766 456788999999999 9999999999999999999999999998 89998
Q ss_pred Ec
Q 040733 225 DI 226 (643)
Q Consensus 225 ~i 226 (643)
-+
T Consensus 157 ~~ 158 (160)
T cd07034 157 LS 158 (160)
T ss_pred Ec
Confidence 64
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=248.39 Aligned_cols=154 Identities=22% Similarity=0.296 Sum_probs=135.6
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccC
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM 516 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m 516 (643)
..+++.|.+.+ + |.+|++|+|++..|. ++....|++|+. +|+||+++|+|+|++++.| ++||+|+|||||+|
T Consensus 2 ~~~~~~l~~~l-~-d~~vv~d~G~~~~~~--~~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~~-~~Vv~i~GDG~f~m 73 (157)
T cd02001 2 IAAIAEIIEAS-G-DTPIVSTTGYASREL--YDVQDRDGHFYM---LGSMGLAGSIGLGLALGLS-RKVIVVDGDGSLLM 73 (157)
T ss_pred HHHHHHHHHhC-C-CCEEEeCCCHhHHHH--HHhhcCCCCEEe---ecchhhHHHHHHHHHhcCC-CcEEEEECchHHHh
Confidence 35788999999 6 889999999988877 444466788886 8999999999999999997 89999999999999
Q ss_pred CHHHHHHHHHh-CCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHH
Q 040733 517 NLQELAAIKAE-NIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595 (643)
Q Consensus 517 ~~~eL~Ta~~~-~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~ 595 (643)
+++||+|+.++ ++|+++||+||++|+++.. | + . . ...+||.++|++||+++++|++++||+
T Consensus 74 ~~~el~t~~~~~~~~i~~vV~nN~~~g~~~~-~------~---~-~-------~~~~d~~~lA~a~G~~~~~v~~~~el~ 135 (157)
T cd02001 74 NPGVLLTAGEFTPLNLILVVLDNRAYGSTGG-Q------P---T-P-------SSNVNLEAWAAACGYLVLSAPLLGGLG 135 (157)
T ss_pred cccHHHHHHHhcCCCEEEEEEeCccccccCC-c------C---C-C-------CCCCCHHHHHHHCCCceEEcCCHHHHH
Confidence 99999999999 5999999999999998741 1 0 0 0 135899999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeCC
Q 040733 596 AAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 596 ~al~~al~~~gp~lIeV~v~~ 616 (643)
++|+++++.++|.||||.+++
T Consensus 136 ~al~~a~~~~gp~vi~v~i~~ 156 (157)
T cd02001 136 SEFAGLLATTGPTLLHAPIAP 156 (157)
T ss_pred HHHHHHHhCCCCEEEEEEecC
Confidence 999999999999999999975
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=249.30 Aligned_cols=163 Identities=28% Similarity=0.464 Sum_probs=139.4
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccc-cCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcccc
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMY-KRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFI 515 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~-~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~ 515 (643)
..+++.|++.++ |.++++|+|++.. .++.. +.+++++. +|+||+++|+|+|+++|+ +++||+|+|||+|+
T Consensus 2 ~~~~~~l~~~l~--d~iiv~d~G~~~~---~~~~~~~~~~~~~~---~gsmG~~lpaAiGa~la~-~~~Vv~i~GDG~f~ 72 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVVSNIGVPSK---ELYAIRDRPLNFYM---LGSMGLASSIGLGLALAT-DRTVIVIDGDGSLL 72 (181)
T ss_pred HHHHHHHHHhCC--CCEEEecCCHhHH---HHHhhhcCCCCeee---ccccccHHHHHHHHHHcC-CCcEEEEEcchHHH
Confidence 357899999995 7899999998753 33333 46777775 799999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHhC-CCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE-eCChhH
Q 040733 516 MNLQELAAIKAEN-IPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VTKKKD 593 (643)
Q Consensus 516 m~~~eL~Ta~~~~-lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V~~~~e 593 (643)
|+++||+|+++++ +|+++||+||++||+++. |. ... ...+||.++|++||+++.+ |++++|
T Consensus 73 m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~-q~-------~~~---------~~~~d~~~lA~a~G~~~~~~v~~~~~ 135 (181)
T TIGR03846 73 MNLGVLPTIAAESPKNLILVILDNGAYGSTGN-QP-------TPA---------SRRTDLELVAKAAGIRNVEKVADEEE 135 (181)
T ss_pred hhhhHHHHHHHhCCCCeEEEEEeCCccccccC-cC-------CCC---------CCCCCHHHHHHHCCCCeEEEeCCHHH
Confidence 9999999999999 599999999999999852 10 000 1358999999999999999 999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeCCCCCcccccCC
Q 040733 594 VRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPY 626 (643)
Q Consensus 594 L~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~ 626 (643)
|+++|+ +++.++|.||||.+++++...|+++.
T Consensus 136 l~~al~-a~~~~~p~li~v~~~~~~~~~p~~~~ 167 (181)
T TIGR03846 136 LRDALK-ALAMKGPTFIHVKVKPGNAKVPNIPL 167 (181)
T ss_pred HHHHHH-HHcCCCCEEEEEEeCCCCCCCCCCCC
Confidence 999997 88889999999999999887776664
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=237.59 Aligned_cols=153 Identities=29% Similarity=0.456 Sum_probs=145.7
Q ss_pred HHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 040733 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLM 152 (643)
Q Consensus 74 ~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~ 152 (643)
++|++.|+++||+++||+||+...++++++.+.+ ++++.++||++|++||+||+|.++ +++|++++|||++|+++++.
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~ 79 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLA 79 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHH
Confidence 4789999999999999999999999999998764 999999999999999999999999 99999999999999999999
Q ss_pred HhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 153 DAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 153 ~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+|+.+++|||+|+++++....+.+.+|+.|+..++++++||...+.++++....+.+|++.|.++ +|||+|++|.
T Consensus 80 ~a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-~gPv~l~ip~ 154 (154)
T cd06586 80 DAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154 (154)
T ss_pred HHHhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEccC
Confidence 99999999999999999877777889999999999999999999999999999999999999988 7999999984
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=238.23 Aligned_cols=167 Identities=35% Similarity=0.592 Sum_probs=150.7
Q ss_pred HHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCH
Q 040733 439 AIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNL 518 (643)
Q Consensus 439 ~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~ 518 (643)
+++.|.+.+++ +.+++.|+|.+..|..+++....+.++..+.++|+||+++|+|+|++++.|+++||+++|||+|+|++
T Consensus 2 ~~~~l~~~~~~-~~~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~~~ 80 (168)
T cd00568 2 VLAALRAALPE-DAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMMTG 80 (168)
T ss_pred HHHHHHHHCCC-CCEEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhccH
Confidence 57788899988 88889999999999999988888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHH
Q 040733 519 QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598 (643)
Q Consensus 519 ~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al 598 (643)
+||+|++++++|+++||+||++|++++..+...++.+.... ....+||.+++++||+++.+|++++|+++++
T Consensus 81 ~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~a~~~G~~~~~v~~~~~l~~a~ 152 (168)
T cd00568 81 QELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGT--------DLSNPDFAALAEAYGAKGVRVEDPEDLEAAL 152 (168)
T ss_pred HHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccc--------cCCCCCHHHHHHHCCCeEEEECCHHHHHHHH
Confidence 99999999999999999999999999988776553322211 2356899999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEe
Q 040733 599 QLMLETPGPYLLDVMV 614 (643)
Q Consensus 599 ~~al~~~gp~lIeV~v 614 (643)
+++++.++|+||||++
T Consensus 153 ~~a~~~~~p~~i~v~~ 168 (168)
T cd00568 153 AEALAAGGPALIEVKT 168 (168)
T ss_pred HHHHhCCCCEEEEEEC
Confidence 9999999999999975
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-30 Score=247.47 Aligned_cols=168 Identities=17% Similarity=0.240 Sum_probs=141.8
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEE
Q 040733 429 TFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDI 508 (643)
Q Consensus 429 ~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i 508 (643)
..+..+....+++.|++.+++ |.||+.|+|++.+|..+ +.+++ .++|+||+++|+|+|+++|.|+++||+|
T Consensus 5 ~~c~gc~~~~~~~~l~~~l~~-~~iv~~D~G~~~~~~~~------~~~~~--~~~g~mG~gl~~AiGa~la~p~~~Vv~i 75 (178)
T cd02008 5 GLCPGCPHRPSFYALRKAFKK-DSIVSGDIGCYTLGALP------PLNAI--DTCTCMGASIGVAIGMAKASEDKKVVAV 75 (178)
T ss_pred CcCCCCCChHHHHHHHHHhcC-CeEEecCcCcccccccC------Chhhc--cccccCccHHHHHhhHHhhCCCCCEEEE
Confidence 456788999999999999999 99999999999888742 23333 2589999999999999999999999999
Q ss_pred ecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE
Q 040733 509 DGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR 587 (643)
Q Consensus 509 ~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~ 587 (643)
+|||+|+|+ ++||+|++++++|+++||+||++|++++.++.. .. ..... .....+||+++|++||+++++
T Consensus 76 ~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~-~~-~~~~~-------~~~~~~d~~~~a~a~G~~~~~ 146 (178)
T cd02008 76 IGDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHP-GT-GKTLT-------EPTTVIDIEALVRAIGVKRVV 146 (178)
T ss_pred ecChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCC-CC-ccccc-------CCCCccCHHHHHHHCCCCEEE
Confidence 999999999 799999999999999999999999998754321 11 10000 112458999999999999999
Q ss_pred eCChhHHH---HHHHHHHhCCCcEEEEEEe
Q 040733 588 VTKKKDVR---AAIQLMLETPGPYLLDVMV 614 (643)
Q Consensus 588 V~~~~eL~---~al~~al~~~gp~lIeV~v 614 (643)
|++.+||+ ++|+++++.++|.||+|..
T Consensus 147 v~~~~~l~~~~~al~~a~~~~gp~lI~v~~ 176 (178)
T cd02008 147 VVDPYDLKAIREELKEALAVPGVSVIIAKR 176 (178)
T ss_pred ecCccCHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999988 8889999999999999975
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=244.16 Aligned_cols=159 Identities=26% Similarity=0.360 Sum_probs=136.4
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhcccc------CCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYK------RARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG 510 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~------~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G 510 (643)
..+++.|++.+|+ |.+++.|+|.+. .++++.. .|.+|+.+ |+|||++|+|+|++++.|+++||+|+|
T Consensus 2 ~~~~~~l~~~l~~-d~ivv~d~G~~~---~~~~~~~~~~~~~~~~~~~~~---g~mG~~lpaAiGaala~p~~~Vv~i~G 74 (188)
T cd03371 2 EDAIEIVLSRAPA-TAAVVSTTGMTS---RELFELRDRPGGGHAQDFLTV---GSMGHASQIALGIALARPDRKVVCIDG 74 (188)
T ss_pred HHHHHHHHhhcCC-CCEEEECCCcch---HHHHHhhcCCCCCccCceeec---CccccHHHHHHHHHHhCCCCcEEEEeC
Confidence 3578999999999 999999999754 3555554 33677764 899999999999999999999999999
Q ss_pred CccccCCHHHHHHHHHhCC-CeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCE-EEe
Q 040733 511 DGSFIMNLQELAAIKAENI-PVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPA-ARV 588 (643)
Q Consensus 511 DGsf~m~~~eL~Ta~~~~l-pv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~-~~V 588 (643)
||+|+|+++||+|++++++ |+++||+||++|++++. + . .. ...+||.++|++||+++ .+|
T Consensus 75 DG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~-~-------~---~~-------~~~~d~~~~A~a~G~~~~~~v 136 (188)
T cd03371 75 DGAALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGG-Q-------P---TV-------SFDVSLPAIAKACGYRAVYEV 136 (188)
T ss_pred CcHHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCC-c-------C---CC-------CCCCCHHHHHHHcCCceEEec
Confidence 9999999999999999997 79999999999998631 0 0 01 23589999999999998 589
Q ss_pred CChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 589 TKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 589 ~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
++++||+++|+++++.++|+||||.+++.+..
T Consensus 137 ~~~~el~~al~~a~~~~~p~lIev~~~~~~~~ 168 (188)
T cd03371 137 PSLEELVAALAKALAADGPAFIEVKVRPGSRS 168 (188)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEecCCCCC
Confidence 99999999999999999999999999988753
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=244.07 Aligned_cols=166 Identities=20% Similarity=0.263 Sum_probs=130.9
Q ss_pred HHHHHHHhc--CCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc-c
Q 040733 438 YAIQILNEL--TDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS-F 514 (643)
Q Consensus 438 ~~~~~L~~~--l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs-f 514 (643)
.+.+.+.++ .|+ |.++++|+|++ .|..++++. +..+|+||+++|+|+|+++|+|+|+||+|+|||| |
T Consensus 13 ~~~~~~~~~~~~~~-d~ii~~D~G~~-~~~~~~~~~--------~~~~g~mG~glpaAiGa~la~p~r~Vv~i~GDGs~f 82 (193)
T cd03375 13 ALAKALAELGIDPE-KVVVVSGIGCS-SRLPYYFNT--------YGFHTLHGRALAVATGVKLANPDLTVIVVSGDGDLA 82 (193)
T ss_pred HHHHHHHHhCCCCC-CEEEEeCCChh-ceehhhccc--------cchhhhhccHHHHHHHHHHhCCCCeEEEEeccchHh
Confidence 344445442 356 89999999987 466666543 2334899999999999999999999999999999 6
Q ss_pred cCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh-cccccccccCCCCCCCCCCCCHHHHHhHCCCCEE---EeCC
Q 040733 515 IMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF-EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA---RVTK 590 (643)
Q Consensus 515 ~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~-~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~---~V~~ 590 (643)
+|++|||+|++|+++|+++||+||++|++++.+|...+ ..+..... +.......+||.++|++||+++. +|++
T Consensus 83 ~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~ 159 (193)
T cd03375 83 AIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTT---PYGNIEEPFNPLALALAAGATFVARGFSGD 159 (193)
T ss_pred hccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCC---CCCCCCCCCCHHHHHHHCCCCEEEEEecCC
Confidence 89999999999999999999999999999986654221 11111111 10111235899999999999985 7999
Q ss_pred hhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 591 KKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 591 ~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
++||+++|+++++.++|+||||.++=
T Consensus 160 ~~el~~al~~al~~~gp~vIev~~~C 185 (193)
T cd03375 160 IKQLKEIIKKAIQHKGFSFVEVLSPC 185 (193)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEECCC
Confidence 99999999999999999999999853
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=253.97 Aligned_cols=199 Identities=16% Similarity=0.142 Sum_probs=158.6
Q ss_pred CCCCCCHHHHHHHHHhcCC--CCCeEEEeCCChhHHHHHHhccccCCCeEEecC--CCcccccchHHHHHHHHh-----C
Q 040733 430 FGEEIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYMYKRARQLLTSS--GFGSMGFGLPAAMGAAVA-----N 500 (643)
Q Consensus 430 ~~~~i~~~~~~~~L~~~l~--~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~--~~g~mG~glpaAiGaalA-----~ 500 (643)
.+..+...-+++.|.+.++ + |.|++.|+|++..|+.+++....+.++..+. +.|+||+|+|+||||+++ .
T Consensus 7 ~c~gc~~~~~~~~l~~~l~~p~-d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~ 85 (237)
T cd02018 7 ACAGCGEVTAVRVVLAALPAPE-DTVIANSTGCSSVYASTAPFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELD 85 (237)
T ss_pred cCcCCCcHHHHHHHHHHhCCCC-CEEEEeCCCccceecccCcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccC
Confidence 3567888899999999998 8 9999999999999998875544556666653 559999999999999999 9
Q ss_pred CCCeEEEEecCcccc-CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHh--hcccccccccCCCCCCCCCCCCHHHH
Q 040733 501 PGAIVVDIDGDGSFI-MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRY--FEANRANSFLGDPLRKSEIFPDMLKF 577 (643)
Q Consensus 501 p~~~Vv~i~GDGsf~-m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~--~~~~~~~~~~g~p~~~~~~~~d~~~l 577 (643)
|+++||+|+|||+|+ |++++|+|+.++++|+++||+||++||++.. |... +..+... ..+.......+||+++
T Consensus 86 p~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~-q~~~~~~~g~~~~---~~~~~~~~~~~D~~~i 161 (237)
T cd02018 86 KKKDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGG-QRSGATPLGADSK---MAPAGKKEDKKDLVLI 161 (237)
T ss_pred CCCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCC-CCCCCCcCCCccc---ccCCCCcCCCCCHHHH
Confidence 999999999999998 7999999999999999999999999998752 2211 1111000 0111122456899999
Q ss_pred HhHCCCCEEE---eCChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCcccccCCCcccccccc
Q 040733 578 AEACGIPAAR---VTKKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHVVPMIPYDKSFKDTIL 635 (643)
Q Consensus 578 A~a~G~~~~~---V~~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~~p~~~~~~~~~~~~~ 635 (643)
|++||+++++ |++++||+++|+++++ .+||+||||.++-.++ .+++++..++.+..
T Consensus 162 A~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v~i~c~~~--~~~~~~~~~~~~~~ 221 (237)
T cd02018 162 AATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAYTPCITE--WGIGSGKSLELARK 221 (237)
T ss_pred HHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC--CCCCHHHHHHHHHH
Confidence 9999999986 9999999999999998 9999999999876543 24555555554443
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=237.13 Aligned_cols=162 Identities=28% Similarity=0.422 Sum_probs=137.1
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccC
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM 516 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m 516 (643)
..+++.|++.+| |.+|++|+|++..|...+ ...+.+++. +|+||+++|+|+|++++.| ++||+++|||+|+|
T Consensus 2 ~~~~~~l~~~~~--~~~vv~d~G~~~~~~~~~--~~~~~~~~~---~g~mG~~lp~AiGaala~~-~~vv~i~GDG~f~m 73 (179)
T cd03372 2 RDAIKTLIADLK--DELVVSNIGFPSKELYAA--GDRPLNFYM---LGSMGLASSIGLGLALAQP-RKVIVIDGDGSLLM 73 (179)
T ss_pred HHHHHHHHHhCC--CCeEEeCCCHhHHHHHHc--cCccccccc---ccchhhHHHHHHHHHhcCC-CcEEEEECCcHHHh
Confidence 467899999998 788889999987664443 134566663 7999999999999999998 89999999999999
Q ss_pred CHHHHHHHHHhCC-CeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC-ChhHH
Q 040733 517 NLQELAAIKAENI-PVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT-KKKDV 594 (643)
Q Consensus 517 ~~~eL~Ta~~~~l-pv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~-~~~eL 594 (643)
+++||+|++++++ |+++||+||++|+++.. |. .. ....+||.++|++||+++.+++ +.+||
T Consensus 74 ~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~-~~---------~~-------~~~~~d~~~lA~a~G~~~~~v~~~~~el 136 (179)
T cd03372 74 NLGALATIAAEKPKNLIIVVLDNGAYGSTGN-QP---------TH-------AGKKTDLEAVAKACGLDNVATVASEEAF 136 (179)
T ss_pred CHHHHHHHHHcCCCCEEEEEEcCccccccCC-CC---------CC-------CCCCCCHHHHHHHcCCCeEEecCCHHHH
Confidence 9999999999995 79999999999998731 10 00 1236899999999999999999 99999
Q ss_pred HHHHHHHHhCCCcEEEEEEeCCCCCcccccC
Q 040733 595 RAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625 (643)
Q Consensus 595 ~~al~~al~~~gp~lIeV~v~~~~~~~p~~~ 625 (643)
+++|++++ ++|.||||.+++++...|+.+
T Consensus 137 ~~al~~a~--~gp~lIev~~~~~~~~~~~~~ 165 (179)
T cd03372 137 EKAVEQAL--DGPSFIHVKIKPGNTDVPNIP 165 (179)
T ss_pred HHHHHHhc--CCCEEEEEEEcCCCCCCCCCC
Confidence 99999998 899999999999887766554
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=250.68 Aligned_cols=183 Identities=15% Similarity=0.142 Sum_probs=144.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHH----HhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeE
Q 040733 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAI----QFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIV 505 (643)
Q Consensus 430 ~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~----~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~V 505 (643)
.+..+....+++.|++.+++ |.|++.|+|++..|.. ++++.+.+.+++.+ .++||+|+|+|||++++.|+++|
T Consensus 7 ~C~gC~~~~~~~~l~~~lp~-d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~--~gsmG~GlpaAiGa~~a~p~r~V 83 (235)
T cd03376 7 ACAGCGAALALRHVLKALGP-DTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFEN--AAAVASGIEAALKALGRGKDITV 83 (235)
T ss_pred cCCCCccHHHHHHHHHHhhc-CeEEEeCCCcccccCCcCCCccccccceehhhcC--HHHHHHHHHHHHHHhccCCCCeE
Confidence 35678999999999999999 9999999999977543 33445555555544 37999999999999999999999
Q ss_pred EEEecCccc-cCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh---cccccccccCCCC-CCCCCCCCHHHHHhH
Q 040733 506 VDIDGDGSF-IMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF---EANRANSFLGDPL-RKSEIFPDMLKFAEA 580 (643)
Q Consensus 506 v~i~GDGsf-~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~---~~~~~~~~~g~p~-~~~~~~~d~~~lA~a 580 (643)
|+|+|||+| +|++|||+|++++++|+++||+||+.|||+.. |...+ +.+......+... ......+||.++|++
T Consensus 84 V~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~-q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a 162 (235)
T cd03376 84 VAFAGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGI-QRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAA 162 (235)
T ss_pred EEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCC-CCCCCCCCCCEeecCCCCccccccccccCCHHHHHHH
Confidence 999999995 89999999999999999999999999998643 33221 1111000110000 001245899999999
Q ss_pred CCCCEE---EeCChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 581 CGIPAA---RVTKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 581 ~G~~~~---~V~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
||++++ ++++++||+++|+++++.++|+||||.++=
T Consensus 163 ~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIev~~~C 201 (235)
T cd03376 163 HNIPYVATASVAYPEDLYKKVKKALSIEGPAYIHILSPC 201 (235)
T ss_pred cCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 999985 599999999999999999999999999863
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=242.49 Aligned_cols=174 Identities=18% Similarity=0.239 Sum_probs=138.5
Q ss_pred CCCCHHHHHHHHHhc--CCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe
Q 040733 432 EEIPPQYAIQILNEL--TDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID 509 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~--l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~ 509 (643)
..+.++.+++.|++. .++ +++|++|+|++..+. .+..+..++ ++||+++|+|+|+++|+|+++||+++
T Consensus 24 ~~i~~~~v~~al~e~~~~~~-d~ivvsdiGc~~~~~----~~~~~~~~~-----~~~G~alPaAiGaklA~Pdr~VV~i~ 93 (277)
T PRK09628 24 DGVILKSIIRAIDKLGWNMD-DVCVVSGIGCSGRFS----SYVNCNTVH-----TTHGRAVAYATGIKLANPDKHVIVVS 93 (277)
T ss_pred CchHHHHHHHHHHHhcCCCC-CEEEEeCcCHHHHhh----ccCCCCcee-----eccccHHHHHHHHHHHCCCCeEEEEE
Confidence 457889999999998 477 999999999874332 222333333 58999999999999999999999999
Q ss_pred cCccccC-CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE--
Q 040733 510 GDGSFIM-NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-- 586 (643)
Q Consensus 510 GDGsf~m-~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-- 586 (643)
|||+|+| +.+|+.|++|+|+|+++||+||+.|||++.++...+...... ...|......++||.++|++||+.++
T Consensus 94 GDG~f~~~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~--~~~~~g~~~~~~D~~~lA~a~G~~~va~ 171 (277)
T PRK09628 94 GDGDGLAIGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWT--VTAQYGNIDPTFDACKLATAAGASFVAR 171 (277)
T ss_pred CchHHHHhhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCcee--eeccCCCcCCCCCHHHHHHHCCCceEEE
Confidence 9999975 789999999999999999999999999975443322211000 01111111345799999999999984
Q ss_pred -EeCChhHHHHHHHHHHhCCCcEEEEEEeCCC
Q 040733 587 -RVTKKKDVRAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 587 -~V~~~~eL~~al~~al~~~gp~lIeV~v~~~ 617 (643)
+|++++||+++|+++++.+||+||||.++-.
T Consensus 172 ~~v~~~~el~~al~~Al~~~Gp~lIeV~~~c~ 203 (277)
T PRK09628 172 ESVIDPQKLEKLLVKGFSHKGFSFFDVFSNCH 203 (277)
T ss_pred EccCCHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 8999999999999999999999999999765
|
|
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=220.44 Aligned_cols=147 Identities=18% Similarity=0.239 Sum_probs=127.0
Q ss_pred HHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 040733 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLM 152 (643)
Q Consensus 74 ~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~ 152 (643)
|+|++.|+++||+++||+||+.+++|+++|.. +|++| .+|||+++++||++| |.+|+++||+.++|+| |++++|+
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~-~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l~ 77 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK-DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINALA 77 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh-CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHHH
Confidence 68999999999999999999999999999953 49999 999999999999999 9999999999998877 9999999
Q ss_pred Hhh-hCCCCEEEEeCCCcc------cccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 153 DAY-SDSIPILAITGQVSQ------KLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 153 ~A~-~~~vPvlvItg~~~~------~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
+|+ .+++|||+|+|++.+ ...+++.+++. .+..+--+++.+.+++++ ..+++|++.|.+++ |||+|-
T Consensus 78 ~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~----~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~-gPv~il 151 (157)
T TIGR03845 78 SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPK----LLDTLGIPYTIPREPEEA-KLIEKAISDAYENS-RPVAAL 151 (157)
T ss_pred HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHH----HHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCC-CCEEEE
Confidence 999 999999999998887 55555555443 112222268899999999 99999999999998 999999
Q ss_pred cccch
Q 040733 226 IPVDV 230 (643)
Q Consensus 226 iP~Dv 230 (643)
++.++
T Consensus 152 ~~~~~ 156 (157)
T TIGR03845 152 LDPKY 156 (157)
T ss_pred EeCCc
Confidence 98764
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-27 Score=239.16 Aligned_cols=173 Identities=17% Similarity=0.240 Sum_probs=140.7
Q ss_pred CCCCCCCHHHHHHHHHhcC------CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCC-cccccchHHHHHHHHhCC
Q 040733 429 TFGEEIPPQYAIQILNELT------DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF-GSMGFGLPAAMGAAVANP 501 (643)
Q Consensus 429 ~~~~~i~~~~~~~~L~~~l------~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~-g~mG~glpaAiGaalA~p 501 (643)
..+..+....+++.|.+.+ |+ |.++++|+|++..|. .|+.+.++ |+||+++|+|+|+++|+|
T Consensus 18 ~~CpGCg~~~il~~l~~al~~l~~~p~-d~vvvsdiGc~~~~~----------~~~~~~~~~g~mG~alpaAiGaklA~P 86 (286)
T PRK11867 18 RWCPGCGDGSILAALQRALAELGLDPE-NVAVVSGIGCSGRLP----------GYINTYGFHTIHGRALAIATGLKLANP 86 (286)
T ss_pred CcCCCCCCHHHHHHHHHHHHHhCCCCC-cEEEEeCCccccccC----------ccccccchhhhhhcHHHHHHHHHHhCC
Confidence 3577888888999999988 66 999999999886432 24455555 999999999999999999
Q ss_pred CCeEEEEecCcc-ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHh--hcccccccccCCCCCCCCCCCCHHHHH
Q 040733 502 GAIVVDIDGDGS-FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRY--FEANRANSFLGDPLRKSEIFPDMLKFA 578 (643)
Q Consensus 502 ~~~Vv~i~GDGs-f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~--~~~~~~~~~~g~p~~~~~~~~d~~~lA 578 (643)
+++||+++|||+ |+|+++||+|++|+|+|+++||+||++|||++.++... ++.......+|+ ....+||.++|
T Consensus 87 d~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~----~~~~~d~~~lA 162 (286)
T PRK11867 87 DLTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGS----IEPPFNPVELA 162 (286)
T ss_pred CCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCC----CCCCCCHHHHH
Confidence 999999999995 99999999999999999999999999999998543221 111111111222 12357999999
Q ss_pred hHCCCCEEE---eCChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 579 EACGIPAAR---VTKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 579 ~a~G~~~~~---V~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
+++|+.++. +.+++||+++|+++++.+||+||||.++=
T Consensus 163 ~a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIev~~~C 203 (286)
T PRK11867 163 LGAGATFVARGFDSDVKQLTELIKAAINHKGFSFVEILQPC 203 (286)
T ss_pred HHCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 999998874 67899999999999999999999999853
|
|
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=235.70 Aligned_cols=169 Identities=21% Similarity=0.237 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHhc-C-CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec
Q 040733 433 EIPPQYAIQILNEL-T-DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG 510 (643)
Q Consensus 433 ~i~~~~~~~~L~~~-l-~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G 510 (643)
.+-...+++.|.++ + |+ |.++++|+|++. |...|+. .++.+|+||+++|+|+|+++|+|+++||+|+|
T Consensus 27 ~~i~~~i~~al~~l~l~p~-d~vivsdiG~s~-~~~~yl~--------~~~~~g~mG~alpaAiGaklA~pd~~VV~i~G 96 (301)
T PRK05778 27 FGILNAIIQALAELGLDPD-KVVVVSGIGCSS-KIPGYFL--------SHGLHTLHGRAIAFATGAKLANPDLEVIVVGG 96 (301)
T ss_pred hHHHHHHHHHHHHhcCCCC-CEEEEeCCcHhh-hhhhhcc--------cCccchhhccHHHHHHHHHHHCCCCcEEEEeC
Confidence 45556777888887 4 66 999999999975 3333433 22334899999999999999999999999999
Q ss_pred Cccc-cCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHh--hcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-
Q 040733 511 DGSF-IMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRY--FEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA- 586 (643)
Q Consensus 511 DGsf-~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~--~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~- 586 (643)
||+| +|+++||+|++|+|+|+++||+||++||+++.++... ++........|. ....+||.++|+++|+.++
T Consensus 97 DG~~~~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~----~~~~~d~~~lA~a~G~~~va 172 (301)
T PRK05778 97 DGDLASIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGN----IEPPIDPCALALAAGATFVA 172 (301)
T ss_pred ccHHHhccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCC----cCCCCCHHHHHHHCCCCEEE
Confidence 9998 5999999999999999999999999999998644321 111111111111 1245899999999999987
Q ss_pred --EeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 587 --RVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 587 --~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
++.+++||+++|+++++.+||+||||.++
T Consensus 173 ~~~v~~~~eL~~ai~~A~~~~GpalIeV~~~ 203 (301)
T PRK05778 173 RSFAGDVKQLVELIKKAISHKGFAFIDVLSP 203 (301)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 79999999999999999999999999875
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-26 Score=229.97 Aligned_cols=173 Identities=20% Similarity=0.244 Sum_probs=141.6
Q ss_pred CCCCCCCHHHHHHHHHhcC------CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCC
Q 040733 429 TFGEEIPPQYAIQILNELT------DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPG 502 (643)
Q Consensus 429 ~~~~~i~~~~~~~~L~~~l------~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~ 502 (643)
..+..+....++..|++.+ ++ +.++++|+|++. |...+++.. ..+++||+++|+|+|+++|+|+
T Consensus 8 ~~CpGCg~~~il~al~~al~~l~~~~~-~~ivvsdiGc~~-~~~~~~~~~--------~~~~~~G~alp~A~GaklA~Pd 77 (279)
T PRK11866 8 IWCPGCGNYGILEALRKALAELGIPPE-NVVVVSGIGCSS-NLPEFLNTY--------GIHGIHGRVLPIATGVKWANPK 77 (279)
T ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCC-CEEEEECCchhh-hhhhhccCC--------CcccccccHHHHHHHHHHHCCC
Confidence 4567788888888888777 56 899999999987 666665432 2368999999999999999999
Q ss_pred CeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc--ccccccccCCCCCCCCCCCCHHHHHh
Q 040733 503 AIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE--ANRANSFLGDPLRKSEIFPDMLKFAE 579 (643)
Q Consensus 503 ~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~--~~~~~~~~g~p~~~~~~~~d~~~lA~ 579 (643)
++||+++||| +|+|++|||.|++|+|+|+++||+||+.|||++.++...++ .+...+.+|++ ....||.++|+
T Consensus 78 ~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~----~~~~d~~~iA~ 153 (279)
T PRK11866 78 LTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNI----EEPFNPIALAL 153 (279)
T ss_pred CcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCC----CCCCCHHHHHH
Confidence 9999999999 79999999999999999999999999999999855544332 22222222221 22359999999
Q ss_pred HCCCCEEEe---CChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 580 ACGIPAARV---TKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 580 a~G~~~~~V---~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
++|+.++.. .++++|+++|+++++.+||.||||..+
T Consensus 154 a~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~v~~p 192 (279)
T PRK11866 154 AAGATFVARGFSGDVKHLKEIIKEAIKHKGFSFIDVLSP 192 (279)
T ss_pred HCCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 999987766 888999999999999999999999975
|
|
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=228.48 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=134.5
Q ss_pred CCCCCCHHHHHHHHHhc------CCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCC
Q 040733 430 FGEEIPPQYAIQILNEL------TDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGA 503 (643)
Q Consensus 430 ~~~~i~~~~~~~~L~~~------l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~ 503 (643)
.+..+....++..+.+. +|+ |.++++|+|++..| ..|+.. .+..+.||+++|+|+|+++|+|++
T Consensus 10 ~CpGCg~~~i~~~~~~a~~~l~~~p~-d~ivvsdiG~~~~~-~~~~~~--------~~~~~~mG~alp~AiGaklA~pd~ 79 (280)
T PRK11869 10 WCPGCGNFGIRNALMKALSELNLKPR-QVVIVSGIGQAAKM-PHYINV--------NGFHTLHGRAIPAATAVKATNPEL 79 (280)
T ss_pred CCcCCCCHHHHHHHHHHHHHcCCCCC-CEEEEeCchHhhhH-HHHccC--------CCCCcccccHHHHHHHHHHHCCCC
Confidence 35556666555555443 366 89999999998775 344332 244578999999999999999999
Q ss_pred eEEEEecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCC
Q 040733 504 IVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACG 582 (643)
Q Consensus 504 ~Vv~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G 582 (643)
+||+++|||+|+|. +|||+||+|+|+|+++||+||++|||++.++........... ..|.......+||.++|+++|
T Consensus 80 ~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~--~~p~g~~~~~~D~~~lA~a~G 157 (280)
T PRK11869 80 TVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTP--TQPWGVFEEPFNPIALAIALD 157 (280)
T ss_pred cEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccc--cCCCCccCCCCCHHHHHHHCC
Confidence 99999999999976 999999999999999999999999999854432111000000 012111234579999999999
Q ss_pred CCEEE---eCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 583 IPAAR---VTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 583 ~~~~~---V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
++++. +.+++||+++|++|++.+||+||||.++
T Consensus 158 ~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIeV~~p 193 (280)
T PRK11869 158 ASFVARTFSGDIEETKEILKEAIKHKGLAIVDIFQP 193 (280)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 99998 7899999999999999999999999985
|
|
| >PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=207.57 Aligned_cols=134 Identities=38% Similarity=0.591 Sum_probs=122.4
Q ss_pred HHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCE
Q 040733 261 LRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDL 338 (643)
Q Consensus 261 i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDl 338 (643)
+++++++|++||||+|++|.|+. ++.+++++|+|++|+||++|+++||+||++||+|+|.+|..++..+++++++||+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 57899999999999999999998 7899999999999999999999999999999999998899999999999999999
Q ss_pred EEEecCccCccccC-ccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHH
Q 040733 339 LLAAGVRFNERMTS-KLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM 394 (643)
Q Consensus 339 vL~vG~~~~~~~t~-~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L 394 (643)
||++|++++++.+. .+..|.++.++||||.|+.++++++++++.|++|++.+|++|
T Consensus 81 vl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 81 VLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp EEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred EEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 99999999987664 344566666999999999999999999999999999999876
|
It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C .... |
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=225.40 Aligned_cols=155 Identities=20% Similarity=0.340 Sum_probs=123.8
Q ss_pred CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCC-cccccchHHHHHHHHhCCCCeEEEEecCcccc-CCHHHHHHHH
Q 040733 448 DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF-GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFI-MNLQELAAIK 525 (643)
Q Consensus 448 ~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~-g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~-m~~~eL~Ta~ 525 (643)
++ |.++++|+|++. ..+ +|+.+.++ +.||+++|+|+|+++|+|+++||+++|||+|+ |+++||+||+
T Consensus 27 p~-d~iivsdiGc~~---------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f~~mg~~eL~tA~ 95 (287)
T TIGR02177 27 PE-QVVVVSGIGCSA---------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDLYGIGGNHFVAAG 95 (287)
T ss_pred CC-CEEEEECCCccc---------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHHHhccHHHHHHHH
Confidence 55 899999999874 123 45555555 56899999999999999999999999999986 9999999999
Q ss_pred HhCCCeEEEEEeCCCchhhHHHHHHh--hcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE-eCChhHHHHHHHHHH
Q 040733 526 AENIPVKILLINNQYLGMNVEYEDRY--FEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VTKKKDVRAAIQLML 602 (643)
Q Consensus 526 ~~~lpv~ivV~NN~~~g~~~~~q~~~--~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V~~~~eL~~al~~al 602 (643)
|+|+|+++||+||+.|||++.++... ++........|+. ....++++.++|+++|..+.. +.++++|+++|++|+
T Consensus 96 r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~--~~~~np~~~a~A~g~g~va~~~~~~~~eL~~ai~~Al 173 (287)
T TIGR02177 96 RRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNI--QDPVNPLLLAIALGYTFVARGFSGDVAHLKEIIKEAI 173 (287)
T ss_pred HhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCcc--CCCCCHHHHHHhCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 99999999999999999999665422 1111111111111 012367899999999988776 699999999999999
Q ss_pred hCCCcEEEEEEeC
Q 040733 603 ETPGPYLLDVMVS 615 (643)
Q Consensus 603 ~~~gp~lIeV~v~ 615 (643)
+.+||+||||.++
T Consensus 174 ~~~GpslIeV~~p 186 (287)
T TIGR02177 174 NHKGYALVDILQP 186 (287)
T ss_pred hCCCCEEEEEeCC
Confidence 9999999999975
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=194.16 Aligned_cols=489 Identities=14% Similarity=0.114 Sum_probs=288.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPG 143 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG 143 (643)
-+.|.++|++.+.+.||.++-||||+.+.+|.+.|.+. ++.+-+..||..|..+|.|-+...-|-.+.+.|.|.
T Consensus 15 ~llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGl- 93 (640)
T COG4231 15 LLLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGL- 93 (640)
T ss_pred HhccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHHhhhcCceeeEEeccccc-
Confidence 35799999999999999999999999999999999764 278899999999999999966655566666666553
Q ss_pred hHHHHHHHHHhhhCCC--CEEEEeCCCcccccCCCCCCccCHHHHhhcc-ceeeeEeCCcCcHHHHHHHHHHHhhcCCCC
Q 040733 144 VTNIMTGLMDAYSDSI--PILAITGQVSQKLLGTDAFQEIPVVEVTRYM-TKHNYLVLDVDDIPRIIKEAFFIATSGRPG 220 (643)
Q Consensus 144 ~~N~~~gl~~A~~~~v--PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~-tk~~~~v~~~~~i~~~l~~A~~~A~s~~~G 220 (643)
-=+.-.+..+.+.++ -+|+|+||.|..+..+.. |+. +.|... --+..+..++.++.+.+..||.++..-. -
T Consensus 94 -NvAsDpl~s~ay~Gv~GGlviv~aDDpg~~SSqne-qds---r~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~-~ 167 (640)
T COG4231 94 -NVASDPLMSLAYAGVTGGLVIVVADDPGMHSSQNE-QDS---RAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSG-L 167 (640)
T ss_pred -ccchhhhhhhhhcCccccEEEEEccCCCcccccch-hHh---HHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhC-C
Confidence 223334444444333 299999999976655544 322 333333 3367778889999999999999987543 6
Q ss_pred eEEEEcccchhhhccCCCCC----C--------CCCCCCCCCCCCCCC---C----HHHHHHHHHHHHhCC---------
Q 040733 221 PVLIDIPVDVQLELAVPNWN----Q--------PCKLPSCISSLPKEP---D----ELALRQTLKLIVESK--------- 272 (643)
Q Consensus 221 PV~i~iP~Dv~~~~~~~~~~----~--------~~~~p~~~~~~~~~~---~----~~~i~~~~~~L~~Ak--------- 272 (643)
||-|..-.++.......... + ..+.+......|..+ . ...+.++.+.+++.+
T Consensus 168 pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~ 247 (640)
T COG4231 168 PVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDD 247 (640)
T ss_pred CEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCC
Confidence 88887776664322100000 0 001111110111111 0 112333444444221
Q ss_pred -CcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCcccc
Q 040733 273 -NPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT 351 (643)
Q Consensus 273 -rPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t 351 (643)
+--|++.+. +...+++-.+.+|+-.. =+-+|+.-.........+++.-+-||++...-+ ++-
T Consensus 248 ~~lGII~~G~---ay~yVkeAl~~lgl~~~-------------~lklg~~~Plp~~~i~~F~~g~~~vlVVEE~~P-~iE 310 (640)
T COG4231 248 AKLGIIASGI---AYNYVKEALEDLGLDDE-------------LLKLGTPYPLPEQLIENFLKGLERVLVVEEGEP-FIE 310 (640)
T ss_pred CceEEEecCc---cHHHHHHHHHHcCCCce-------------eEEecCCcCCCHHHHHHHHhcCcEEEEEecCCc-hHH
Confidence 222333332 23334444455554321 011222222233345566777777777754422 111
Q ss_pred Ccccccc-CCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccc
Q 040733 352 SKLEDFA-TRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK 428 (643)
Q Consensus 352 ~~~~~~~-~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 428 (643)
.....+. ....-+.| .||. ..-+... -+...++.+|.+.+......... .-..+..+.....+.+.+
T Consensus 311 ~qv~~~l~~~g~~v~v------~GKd-~gllP~~GElt~~~i~~ai~~~l~~~~~~s~~---~~~~~~~~~~~~~~~RpP 380 (640)
T COG4231 311 EQVKALLYDAGLPVEV------HGKD-EGLLPMEGELTPEKIANAIAKFLGKEGSPSYE---SIVAEVRKAAVLIPPRPP 380 (640)
T ss_pred HHHHHHHHhcCCceEe------eccc-ccccCcccccCHHHHHHHHHHHhCccCCcccc---cchhhhhcccccCCCCCC
Confidence 1111111 00000111 1111 0011122 25567777777776653211111 111122222222333334
Q ss_pred CCCCCCCHHHHHHHHHhcCCCC--CeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEE
Q 040733 429 TFGEEIPPQYAIQILNELTDDE--ETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVV 506 (643)
Q Consensus 429 ~~~~~i~~~~~~~~L~~~l~~~--d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv 506 (643)
..+..+++...+..++....+- .. .+|+|++.+ ....|...... .-.||.+++.|-|+..+.+ +++|
T Consensus 381 ~lC~GCPHr~sf~~~k~~~~~~~~~~--~~DIGCytl------g~~~P~~~~d~--t~~mGssig~a~g~~~~~~-k~~v 449 (640)
T COG4231 381 ALCPGCPHRPSFYALKKAAAELGGHP--SGDIGCYTL------GILPPLNTVDT--TTMMGSSIGIAGGLSFAST-KKIV 449 (640)
T ss_pred cCCCCCCCchhhHHHHHHHHhhCCCC--CCCcceeec------ccCCCcchhhh--hhhccchhhhccccccccC-CceE
Confidence 5566777777776666654220 22 678997643 33334333322 2468888999999988775 8899
Q ss_pred EEecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCE
Q 040733 507 DIDGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPA 585 (643)
Q Consensus 507 ~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~ 585 (643)
+++|||+|.|+ ++.|.+|+..+.+++++|++|..-+|..+++....+ ....|++ ....+.+.+++++|+..
T Consensus 450 a~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~----~~~~g~~----~~~i~iee~~r~~Gv~~ 521 (640)
T COG4231 450 AVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTG----VAAEGTK----STAIVIEEVVRAMGVED 521 (640)
T ss_pred EEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcc----cccCCCc----cceeEhhHhhhhcCcee
Confidence 99999999998 888999999999999999999998887544332111 0111221 34579999999999988
Q ss_pred EEeC---ChhHHHHHHHHHHhCCCcEEE
Q 040733 586 ARVT---KKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 586 ~~V~---~~~eL~~al~~al~~~gp~lI 610 (643)
+++- +.+++.++++++++..||.||
T Consensus 522 v~~vdp~~~~~~~~~~keale~~gpsVi 549 (640)
T COG4231 522 VETVDPYDVKELSEAIKEALEVPGPSVI 549 (640)
T ss_pred eeccCCcchHHHHHHHHHHhcCCCceEE
Confidence 7654 568899999999999998876
|
|
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-16 Score=185.71 Aligned_cols=484 Identities=19% Similarity=0.134 Sum_probs=286.2
Q ss_pred CCcHHHHHHHHHHH-------CCC---CEEEEccCCCcHHHHHHHhhC-------CCeEEecCChhHHHHHHHHHHH---
Q 040733 69 PRKGADIIVEALER-------QGV---TTVFAYPGGASIEIHQSLTRS-------NIRSILPRHEQGGIFAAEGYAR--- 128 (643)
Q Consensus 69 ~~~~a~~lv~~L~~-------~GV---~~vFg~PG~~~~~l~~al~~~-------~i~~i~~~hE~~A~~~A~Gyar--- 128 (643)
-++|.|+|++.+.+ .|+ ..|-||||+.+.++.+.|.+. +|.+.+..||..|+-+|.|--+
T Consensus 27 ~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~ 106 (1165)
T PRK09193 27 FLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNL 106 (1165)
T ss_pred eeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhccccc
Confidence 57999999999998 999 999999999999999999653 3999999999999999966633
Q ss_pred -----HhCCcEEEEEccchhhHHHHHHHHHhhhCCC----CEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCC
Q 040733 129 -----SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSI----PILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLD 199 (643)
Q Consensus 129 -----~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~v----PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~ 199 (643)
..|.-+++. -=|||+-=+.-.+..|...++ -||+|+||.|.....+..+|. +...++..+ ......+
T Consensus 107 ~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SSq~eqdS-r~~~~~a~i--Pvl~Ps~ 182 (1165)
T PRK09193 107 FPGAKYDGVFGMWY-GKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSSTLPHQS-EHAFKAAGM--PVLFPAN 182 (1165)
T ss_pred ccceeeccceEEEe-cCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccccchhhh-HHHHHHcCC--ceeCCCC
Confidence 345444443 346888777778877766666 699999999987666555443 333222222 3556678
Q ss_pred cCcHHHHHHHHHHHhhcCCCCeEEEEcccchhhhccCCCCCC---CCCCCC-C---C----CCCCCCCCH-------HHH
Q 040733 200 VDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ---PCKLPS-C---I----SSLPKEPDE-------LAL 261 (643)
Q Consensus 200 ~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~~~---~~~~p~-~---~----~~~~~~~~~-------~~i 261 (643)
++++.+....||.++..-. -||-+-.-.++........... ....|. + . .+.+..|.. ..+
T Consensus 183 ~qE~~d~~~~g~~lSr~~g-~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~~~~~~~~~rl 261 (1165)
T PRK09193 183 VQEILDYGLHGWAMSRYSG-LWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLEQEARLLDYKL 261 (1165)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCCcHHHHHHHHHHHH
Confidence 8889999999999987533 5887777666543321100000 000110 0 0 011111111 122
Q ss_pred HHHHHHHHhCC-----------CcEEEEcCCchhhHHHHHHHHHHh----------CCceeecCCCCCCCCCCCCCcccc
Q 040733 262 RQTLKLIVESK-----------NPVLCVGGGCLNSSEELRKFVGLT----------GIPVTCTTMGLGLFPCTDELCLRM 320 (643)
Q Consensus 262 ~~~~~~L~~Ak-----------rPvIl~G~g~~~~~~~l~~lae~l----------g~PV~tt~~gkg~~~~~hpl~lG~ 320 (643)
..+.+.....+ |--||+.+ .+...+++-.+.+ |++++ -+|+
T Consensus 262 ~a~~a~a~~n~ln~~~~~~~~~~iGIItsG---~~y~~v~eal~~lg~~~~~~~~~gi~il---------------Kvgm 323 (1165)
T PRK09193 262 YAALAYARANKLDRVVIDSPNARLGIVAAG---KAYLDVRQALRDLGLDEETAARLGIRLY---------------KVGM 323 (1165)
T ss_pred HHHHHHHHhCCCCeeecCCCCCCEEEEecC---ccHHHHHHHHHHcCCChhhhcccCCCEE---------------EeCC
Confidence 23333222111 11122211 1223333333434 44443 2444
Q ss_pred cCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCC---CCeeEec--CHHHHHHHHH
Q 040733 321 VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKL---PDVSICA--DAKLVFNRMN 395 (643)
Q Consensus 321 ~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~---~~~~i~~--D~~~~L~~L~ 395 (643)
.-........++.+..|-||+|...-+-.-. .+....-+ ...++.|..+||.-. .-+...+ |+..+.+.|.
T Consensus 324 ~~PL~~~~i~~Fa~g~~~vlVVEE~~p~iE~-qlk~~l~~---~~~~~rp~v~GK~~~~g~~llp~~gEl~~~~va~~l~ 399 (1165)
T PRK09193 324 VWPLEPQGVRAFAEGLDEILVVEEKRQIIEY-QLKEELYN---WPDDVRPRVIGKFDPQGNWLLPAHGELSPAIIAKAIA 399 (1165)
T ss_pred CCCCCHHHHHHHHhcCCEEEEEecCchHHHH-HHHHHHhh---ccCCcCceeEeeeCCCCCccCCCcCCcCHHHHHHHHH
Confidence 3344455677889999999999866431111 11100000 001111223344211 1122223 4455555555
Q ss_pred HHHhhcCCC--CCCChh---HHHHHHHHH---HHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHH
Q 040733 396 MILESKGVG--FMFDFS---AWREELHEQ---KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQ 467 (643)
Q Consensus 396 ~~l~~~~~~--~~~~~~---~w~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~ 467 (643)
..+...... ...... .|.+..... ....+...+..+..|++....+ +|+ +.++..|+|+|.+-.
T Consensus 400 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~P~fCsGCPH~~st~-----vp~-gs~~~~dIGChtl~~-- 471 (1165)
T PRK09193 400 RRLLKLELPGDVRARIAARLAVLEAKEAALALPRVTAARTPYFCSGCPHNTSTR-----VPE-GSRALAGIGCHYMAT-- 471 (1165)
T ss_pred HHhhhcccccccchhhhhcccccccccccccccccCCCCCCCcCCCCCCcccee-----cCC-CCEEecCcChhhhcc--
Confidence 444321100 000000 111111000 0111223344567777776544 376 889999999886532
Q ss_pred hccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 468 FYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 468 ~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
+. |+.. ..+-.||..+..++|.+....+++||.++|||.|+|+ +..|..++..+.+++++|+.|+.-+|...
T Consensus 472 ~~----p~~~---~~~~~MG~eg~~~~G~a~f~~~~hv~a~iGDgTffHSG~~al~~AV~~~~nit~~IL~N~~vAMTGg 544 (1165)
T PRK09193 472 WM----DRNT---STFTQMGGEGVPWIGQAPFTDEKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKILYNDAVAMTGG 544 (1165)
T ss_pred CC----CCCC---CeeeccCCcchhhceeccccCCCcEEEEeccccchhcCHHHHHHHHhcCCCeEEEEEeCCcccccCC
Confidence 11 2221 3346799999999998887777999999999999997 88899999999999999999999888642
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHH-----------------HHHHHHHH-hCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDV-----------------RAAIQLML-ETPG 606 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL-----------------~~al~~al-~~~g 606 (643)
++. .| ....+++++++++.|++.+.+- ++.++ .+++++.+ +.+|
T Consensus 545 Q~~-----------~g-----~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~G 608 (1165)
T PRK09193 545 QPV-----------DG-----GLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPG 608 (1165)
T ss_pred CCC-----------CC-----CcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCC
Confidence 111 01 1245799999999999988775 55554 35566666 6778
Q ss_pred cEEE
Q 040733 607 PYLL 610 (643)
Q Consensus 607 p~lI 610 (643)
++||
T Consensus 609 vsVi 612 (1165)
T PRK09193 609 VTVL 612 (1165)
T ss_pred cEEE
Confidence 7765
|
|
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=179.74 Aligned_cols=489 Identities=16% Similarity=0.135 Sum_probs=285.5
Q ss_pred CCcHHHHHHHHHHH-------CCC---CEEEEccCCCcHHHHHHHhhC-------CCeEEecCChhHHHHHHHHHHHHh-
Q 040733 69 PRKGADIIVEALER-------QGV---TTVFAYPGGASIEIHQSLTRS-------NIRSILPRHEQGGIFAAEGYARSS- 130 (643)
Q Consensus 69 ~~~~a~~lv~~L~~-------~GV---~~vFg~PG~~~~~l~~al~~~-------~i~~i~~~hE~~A~~~A~Gyar~s- 130 (643)
-++|.|+|++.+.+ .|+ ..|-||||+.+.++.+.|.+. +|.+.+..||..|+-+|.|-+++.
T Consensus 19 ~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~~ 98 (1159)
T PRK13030 19 FLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVEA 98 (1159)
T ss_pred eeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhccccc
Confidence 57999999999999 999 999999999999999999653 399999999999999999999443
Q ss_pred -------CCcEEEEEccchhhHHHHHHHHHhhhCCC----CEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCC
Q 040733 131 -------GTPGVCLVSSGPGVTNIMTGLMDAYSDSI----PILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLD 199 (643)
Q Consensus 131 -------g~~gv~~~t~GpG~~N~~~gl~~A~~~~v----PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~ 199 (643)
|.-+++ .-=|||+-=+.-++..+.+.++ -||+|+||.|.....+..+| .+...++..+ ......+
T Consensus 99 ~~~~~~~Gv~~l~-~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SSq~eqd-Sr~~~~~a~i--Pvl~Ps~ 174 (1159)
T PRK13030 99 DPERTVDGVFAMW-YGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSSSMPHQ-SDFALIAWHM--PVLNPAN 174 (1159)
T ss_pred cCCccccceEEEE-ecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccCcCHHH-HHHHHHHcCC--ceeCCCC
Confidence 332333 2346887777778887777766 69999999997766655433 2333333222 4566778
Q ss_pred cCcHHHHHHHHHHHhhcCCCCeEEEEcccchhhhccCCCCCC---CCCCCC-CC-------CCCCCCCCH-------HHH
Q 040733 200 VDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ---PCKLPS-CI-------SSLPKEPDE-------LAL 261 (643)
Q Consensus 200 ~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~~~---~~~~p~-~~-------~~~~~~~~~-------~~i 261 (643)
++++.+....||.++..-. -||-+-.-.++........... ....|. +. .+.+..|.. +.+
T Consensus 175 ~qE~~d~~~~a~~lSr~~~-~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl 253 (1159)
T PRK13030 175 VQEYLDFGLYGWALSRYSG-AWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLAAKL 253 (1159)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHHHHH
Confidence 8899999999999987533 5787777666543321100000 000110 10 011111111 123
Q ss_pred HHHHHHHHhCCCcEEEE-cC----Cch---hhHHHHHHHHHHhCC-ceeecCCCCCCCCCCCCCcccccCCCCcHHHHHh
Q 040733 262 RQTLKLIVESKNPVLCV-GG----GCL---NSSEELRKFVGLTGI-PVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYA 332 (643)
Q Consensus 262 ~~~~~~L~~AkrPvIl~-G~----g~~---~~~~~l~~lae~lg~-PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~ 332 (643)
..+.+.-...+-+-+.. |. |.. .+...+++-.+.+|+ .......|..+ +-+|+.-.+......++
T Consensus 254 ~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgiri------lKvgm~~PL~~~~i~~F 327 (1159)
T PRK13030 254 PAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRI------YKVGLSWPLEPTRLREF 327 (1159)
T ss_pred HHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccE------EEeCCccCCCHHHHHHH
Confidence 33333222122111111 11 111 133444444455555 21111122111 22344223344557788
Q ss_pred hhcCCEEEEecCccC---ccccCccccccC--CceEEEEcCCcccccCCCCCCeeEec--CHHHHHHHHHHHHhhcCCCC
Q 040733 333 VNECDLLLAAGVRFN---ERMTSKLEDFAT--RAKIVHIDIDSNEIGKVKLPDVSICA--DAKLVFNRMNMILESKGVGF 405 (643)
Q Consensus 333 l~~aDlvL~vG~~~~---~~~t~~~~~~~~--~~~iI~Id~d~~~i~~~~~~~~~i~~--D~~~~L~~L~~~l~~~~~~~ 405 (643)
++..|-||+|...-+ ..+..-+..+.. ..+++-..... |. +-+...+ ++..+.+.|...+.....
T Consensus 328 ~~g~d~VlVVEE~~p~iE~Qlk~~l~~~~~~~~~~v~GK~~~~---G~---pllp~~gEl~~~~v~~~l~~~l~~~~~-- 399 (1159)
T PRK13030 328 ADGLEEILVIEEKRPVIEQQIKDYLYNRPGGARPRVVGKHDED---GA---PLLSELGELRPSLIAPVLAARLARHKP-- 399 (1159)
T ss_pred HhcCCEEEEEeCCchHHHHHHHHHHHhccccCCceeEEEECCC---CC---cCCCCcCCcCHHHHHHHHHHHHhccCc--
Confidence 999999999987644 111100000111 11232221100 10 1122223 334444555444432110
Q ss_pred CCChhHHH-HHHHHH----HHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEec
Q 040733 406 MFDFSAWR-EELHEQ----KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTS 480 (643)
Q Consensus 406 ~~~~~~w~-~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~ 480 (643)
......|. ...... ....+...+..+..|++.... .+++ +.++..|+|++.+-... .+ . .
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~R~P~~C~GCPH~~s~-----k~~~-~~~~~gdIGC~tl~~~~---~~-~-----~ 464 (1159)
T PRK13030 400 ALDRRARVVDLVAPQILSNEADAVVRTPYFCSGCPHNTST-----KVPE-GSIAQAGIGCHFMASWM---DR-D-----T 464 (1159)
T ss_pred cchhhhccccccccccccccccCCCCCCCcCCCCCCchhh-----ccCC-CCEeecCcCHHHHhhcc---cc-c-----c
Confidence 11111121 100000 011222334556777776665 3345 78999999998764422 11 1 1
Q ss_pred CCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccccccc
Q 040733 481 SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANS 559 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~ 559 (643)
..+-.||.++..++|.+-...+++||.++|||.|+|+ +..|..++..+.+++++|++|+.-+|...++.
T Consensus 465 ~~~~~MG~~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~~al~~AV~~~~nit~~IL~N~~tAMTGgQp~---------- 534 (1159)
T PRK13030 465 TGLTQMGGEGVDWIGHAPFTETKHVFQNLGDGTYFHSGSLAIRQAVAAGANITYKILYNDAVAMTGGQPV---------- 534 (1159)
T ss_pred ceeeccCccchhhceeccccCCCCEEEEeccchhhhcCHHHHHHHHhcCCCeEEEEEeCCcccccCCCCC----------
Confidence 2346799999999999888778899999999999997 88999999999999999999999888632110
Q ss_pred ccCCCCCCCCCCCCHHH---HHhHCCCCEEEeC--ChhH----------------HHHHHHHHH-hCCCcEEE
Q 040733 560 FLGDPLRKSEIFPDMLK---FAEACGIPAARVT--KKKD----------------VRAAIQLML-ETPGPYLL 610 (643)
Q Consensus 560 ~~g~p~~~~~~~~d~~~---lA~a~G~~~~~V~--~~~e----------------L~~al~~al-~~~gp~lI 610 (643)
...++..+ ++++.|++.+.|. ++.+ ..+++++++ +.+|++||
T Consensus 535 ---------~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsVi 598 (1159)
T PRK13030 535 ---------DGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVL 598 (1159)
T ss_pred ---------CCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEE
Confidence 12356777 7779999888775 4433 345666667 67787765
|
|
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-17 Score=165.53 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=105.1
Q ss_pred CCcccccchHHHHHHHHhCC----CCeEEEEecCccccC--CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVANP----GAIVVDIDGDGSFIM--NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p----~~~Vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
..|+||+++|+|+|++++.+ +++|++|+|||+|++ +.++|.++.++++|.+++|+||++|++.....
T Consensus 103 ~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~------- 175 (255)
T cd02012 103 TTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTD------- 175 (255)
T ss_pred CCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHh-------
Confidence 34999999999999999865 899999999999998 58999999999999999999999998643211
Q ss_pred ccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHhC-CCcEEEEEEeCCCCCc
Q 040733 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLET-PGPYLLDVMVSYQEHV 620 (643)
Q Consensus 556 ~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~~-~gp~lIeV~v~~~~~~ 620 (643)
. .....||.+++++||+++++|+ +.++|.++++++.+. ++|++|+|.+.+....
T Consensus 176 ---~--------~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~t~kg~g~ 232 (255)
T cd02012 176 ---D--------ILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIKGKGV 232 (255)
T ss_pred ---h--------ccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEEeeccccc
Confidence 0 1235799999999999999999 999999999999876 8999999999887754
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.6e-15 Score=170.87 Aligned_cols=484 Identities=17% Similarity=0.132 Sum_probs=278.9
Q ss_pred CCcHHHHHHHHH-------HHCCCC---EEEEccCCCcHHHHHHHhhC-------CCeEEecCChhHHHHHHHHHHHHh-
Q 040733 69 PRKGADIIVEAL-------ERQGVT---TVFAYPGGASIEIHQSLTRS-------NIRSILPRHEQGGIFAAEGYARSS- 130 (643)
Q Consensus 69 ~~~~a~~lv~~L-------~~~GV~---~vFg~PG~~~~~l~~al~~~-------~i~~i~~~hE~~A~~~A~Gyar~s- 130 (643)
-++|.|+|++.+ .+.|++ .|-||||+.+.++.++|.+. +|.+.+..||..|+-|..|--++-
T Consensus 30 ~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq~~e~ 109 (1186)
T PRK13029 30 YISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQQLEL 109 (1186)
T ss_pred eecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhhhccc
Confidence 479999999999 999999 99999999999999999653 399999999999998888877642
Q ss_pred -------CCcEEEEEccchhhHHHHHHHHHhh--hCCC--CEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCC
Q 040733 131 -------GTPGVCLVSSGPGVTNIMTGLMDAY--SDSI--PILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLD 199 (643)
Q Consensus 131 -------g~~gv~~~t~GpG~~N~~~gl~~A~--~~~v--PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~ 199 (643)
|.-+++ .-=|||+-=+.-.+..+. ..++ -||+|+||.|.....+..+|. +...++.. -......+
T Consensus 110 ~~~a~~dGv~~lw-ygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SSq~eqdS-r~~~~~a~--iPvl~Ps~ 185 (1186)
T PRK13029 110 DPGAKRDGVFGMW-YGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSSSVAHQS-DHTFIAWG--IPVLYPAS 185 (1186)
T ss_pred ccceeeccceEEE-ecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccccCHHHH-HHHHHHcC--CceeCCCC
Confidence 322332 234588766666776444 3322 399999999987666555443 33222222 23556677
Q ss_pred cCcHHHHHHHHHHHhhcCCCCeEEEEcccchhhhccCCCCCC-C--CCCCC-CC-------CCCCCCCCH-------HHH
Q 040733 200 VDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ-P--CKLPS-CI-------SSLPKEPDE-------LAL 261 (643)
Q Consensus 200 ~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~~~~~~~~~~-~--~~~p~-~~-------~~~~~~~~~-------~~i 261 (643)
++++.+....||.++..-. -||-+-.-.++.......+... . ...|. +. .+.+..|.. ..+
T Consensus 186 ~qE~~d~~~~a~~lSr~~g-~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~~~e~~~~~~kl 264 (1186)
T PRK13029 186 VQDYLDYGLHGWAMSRYSG-LWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLAQEERMLEFKW 264 (1186)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEEEEEeeeeeecceeeecCCcccccCCcccccCCccccccccCCCcHHHHHHHHHHHH
Confidence 8888999999999987533 5888877766654432111000 0 01111 10 011111111 122
Q ss_pred HHHHHHHHhCC-CcEEEEcC----Cch---hhHHHHHHHHHHhC----------CceeecCCCCCCCCCCCCCcccccCC
Q 040733 262 RQTLKLIVESK-NPVLCVGG----GCL---NSSEELRKFVGLTG----------IPVTCTTMGLGLFPCTDELCLRMVGM 323 (643)
Q Consensus 262 ~~~~~~L~~Ak-rPvIl~G~----g~~---~~~~~l~~lae~lg----------~PV~tt~~gkg~~~~~hpl~lG~~g~ 323 (643)
..+.+.....+ +-+.+-|. |+. .+...+++..+.+| ++++ -+|+.-.
T Consensus 265 ~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~il---------------Kvgm~~P 329 (1186)
T PRK13029 265 YAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLL---------------KVGCVWP 329 (1186)
T ss_pred HHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCCEE---------------EeCCCCC
Confidence 23333222111 11111121 111 12333344334444 4443 2444334
Q ss_pred CCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCC--------------CCCeeEec--CH
Q 040733 324 FGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVK--------------LPDVSICA--DA 387 (643)
Q Consensus 324 ~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~--------------~~~~~i~~--D~ 387 (643)
.......++.+..|-||+|...-+-.-. .+....-+ ...+..|..+||.- ..-+...+ |+
T Consensus 330 L~~~~i~~Fa~g~d~vlVVEE~~p~iE~-qlk~~l~~---~~~~~rp~v~GK~~~~~~~~~~~~~~~g~~llp~~gEL~p 405 (1186)
T PRK13029 330 LDPQSVREFAQGLEEVLVVEEKRAVIEY-QLKEELYN---WREDVRPAIFGKFDHRDGAGGEWSVPAGRWLLPAHAELSP 405 (1186)
T ss_pred CCHHHHHHHHhcCCEEEEEecCchHHHH-HHHHHHhh---ccCCcCCeeEecccccccccccccccccCCCCCcccCcCH
Confidence 4455678889999999999866331110 00000000 00011112223321 01222333 44
Q ss_pred HHHHHHHHHHHhhcCCCC--CC---ChhHHHHHHHHH---HHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCC
Q 040733 388 KLVFNRMNMILESKGVGF--MF---DFSAWREELHEQ---KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVG 459 (643)
Q Consensus 388 ~~~L~~L~~~l~~~~~~~--~~---~~~~w~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G 459 (643)
..+...|...+....... .. ....|....... ....+...+..+..|++....+. ++ +.++..|+|
T Consensus 406 ~~va~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~R~P~fCsGCPH~~st~~-----~~-gs~~~~dIG 479 (1186)
T PRK13029 406 ALIAKAIARRLAALGLPADVAARMDARVADIEAKERAAAQPRLLTERKPWFCSGCPHNTSTRV-----PE-GSRALAGIG 479 (1186)
T ss_pred HHHHHHHHHHHHhcCCCcccchhhhhhhhhcccccccccccccCCCCCCCcCCCCCCchhhcc-----CC-CCEEecCcC
Confidence 555555655553311100 00 001121111100 00112223455677777765444 55 788999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHhCCCeEEEEEeC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINN 538 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN 538 (643)
+|.+-... .+. ..++-.||..+..++|.+-...+++||.++|||.|+|+ +..|..++..+.+++++|+.|
T Consensus 480 Chtl~~~~---~~~------~~~~~~MGgeg~~~~G~a~f~~~~hv~aniGDgTffHSG~~alr~AV~~~~nit~kIL~N 550 (1186)
T PRK13029 480 CHYMAMWM---DRS------TEGFSQMGGEGVAWIGQMPFSRRRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKILYN 550 (1186)
T ss_pred HHHHhhcc---ccc------cceeeccCcchhhheeecccCCCCCEEEEeccccchhcCHHHHHHHHhcCCCEEEEEEeC
Confidence 98764322 111 12346799999999999887777899999999999998 888999999999999999999
Q ss_pred CCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHH---HHhHCCCCEEEeCC--hhHH-----------------HH
Q 040733 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLK---FAEACGIPAARVTK--KKDV-----------------RA 596 (643)
Q Consensus 539 ~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~---lA~a~G~~~~~V~~--~~eL-----------------~~ 596 (643)
+.-+|...++. ....+..+ +.++.|++.+.|-+ +.++ .+
T Consensus 551 ~avAMTGgQp~-------------------~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~ 611 (1186)
T PRK13029 551 DAVAMTGGQPV-------------------DGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELD 611 (1186)
T ss_pred cchhccCCCCC-------------------CCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHH
Confidence 98888632110 12345666 67999998887755 4333 45
Q ss_pred HHHHHH-hCCCcEEE
Q 040733 597 AIQLML-ETPGPYLL 610 (643)
Q Consensus 597 al~~al-~~~gp~lI 610 (643)
++++.+ +.+|++||
T Consensus 612 ~vq~~lr~~~GvsVi 626 (1186)
T PRK13029 612 AVQRELREVPGVSVL 626 (1186)
T ss_pred HHHHHHhcCCCcEEE
Confidence 556666 67787665
|
|
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-17 Score=170.24 Aligned_cols=119 Identities=23% Similarity=0.255 Sum_probs=99.8
Q ss_pred CCCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 481 SGFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
+..++||+++|.|+|++++. |++.||+++|||+|+|+ .++|.||.++++|+++||+||+ |++....+.
T Consensus 119 g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~-~~~~~~~~~----- 192 (341)
T TIGR03181 119 PPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ-WAISVPRSK----- 192 (341)
T ss_pred CCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCC-Cccccchhh-----
Confidence 34478999999999999886 89999999999999998 5789999999999999999997 664321111
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH------HHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV------RAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL------~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
....+||.++|++||+++++|+..+++ +++++++.+.++|+||||.+.+..
T Consensus 193 -------------~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~ 249 (341)
T TIGR03181 193 -------------QTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLG 249 (341)
T ss_pred -------------hhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCC
Confidence 013479999999999999999999886 888888888899999999998753
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=165.41 Aligned_cols=119 Identities=25% Similarity=0.280 Sum_probs=98.7
Q ss_pred CCCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC-H-HHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 481 SGFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN-L-QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
++.|+||+++|.|+|+++|. +++.||+++|||+|+|+ + ++|.++.++++|+++||.||+ |++....+..
T Consensus 101 ~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~-~~i~~~~~~~---- 175 (293)
T cd02000 101 GGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNG-YAISTPTSRQ---- 175 (293)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCC-eeccCCHHHH----
Confidence 34589999999999999885 78999999999999987 3 679999999999999999995 9986543321
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCC--hhHHHHHHHHHH----hCCCcEEEEEEeCCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK--KKDVRAAIQLML----ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~--~~eL~~al~~al----~~~gp~lIeV~v~~~~ 618 (643)
...+||.++|++||+++++|+. ++++.+++++++ +.++|+||||.+++..
T Consensus 176 --------------~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~ 231 (293)
T cd02000 176 --------------TAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLG 231 (293)
T ss_pred --------------hCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccC
Confidence 1347999999999999999974 567777777766 4679999999998764
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=165.77 Aligned_cols=118 Identities=27% Similarity=0.380 Sum_probs=97.7
Q ss_pred CCCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 481 SGFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
+++|+||+++|.|+|+++|. +++.||+++|||+|++. ..+|.++.++++|+++||+||+ |++....+..
T Consensus 107 ~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~-yg~s~~~~~~---- 181 (315)
T TIGR03182 107 GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNL-YAMGTSVERS---- 181 (315)
T ss_pred cCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCC-ccccCCHHHH----
Confidence 45699999999999999997 78999999999999876 3669999999999999999995 9987654321
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChh--HH----HHHHHHHHhCCCcEEEEEEeCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK--DV----RAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~--eL----~~al~~al~~~gp~lIeV~v~~~ 617 (643)
...+||.++|++||+++++|+..+ ++ +.+++++.+.++|+||||.+.+-
T Consensus 182 --------------~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 236 (315)
T TIGR03182 182 --------------SSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRF 236 (315)
T ss_pred --------------hCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcC
Confidence 134799999999999999998754 44 45555555678999999999765
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-16 Score=163.03 Aligned_cols=118 Identities=27% Similarity=0.421 Sum_probs=98.1
Q ss_pred CCCcccccchHHHHHHHHhC-----------CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCC-CchhhHH
Q 040733 481 SGFGSMGFGLPAAMGAAVAN-----------PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQ-YLGMNVE 546 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~-----------p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~-~~g~~~~ 546 (643)
+++|+||+++|.|+|+++|. |++.||+++|||+|+.. ..+|.+|.++++|+++||.||+ ++++...
T Consensus 125 ~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~ 204 (341)
T CHL00149 125 GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHH 204 (341)
T ss_pred CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchh
Confidence 46799999999999999993 78999999999999743 2369999999999999999999 5665421
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH------HHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV------RAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL------~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
.+ ...+||.++|++||+++++|+..+.+ +.+++++.+.++|+||||.+.+-.
T Consensus 205 ~~--------------------~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~ 262 (341)
T CHL00149 205 RS--------------------TSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFR 262 (341)
T ss_pred he--------------------eCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCC
Confidence 10 12479999999999999999988764 678888888899999999997653
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-15 Score=172.60 Aligned_cols=119 Identities=20% Similarity=0.249 Sum_probs=104.4
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCCH-HH-HHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMNL-QE-LAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~~-~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|+||+++|+|+|++++.+ +++|++++|||+|+++. +| |.||.++++|.+++|+||++|++...
T Consensus 117 ~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~ 196 (624)
T PRK05899 117 TGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGP 196 (624)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccc
Confidence 6999999999999999976 78999999999999984 55 99999999999999999999987531
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
.. . ...+||.+++++||+++++|+ +.++|.++++++.+.++|+||+|.+.+....
T Consensus 197 ---------~~-~---------~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v~t~kg~g~ 253 (624)
T PRK05899 197 ---------TE-G---------WFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIAKTIIGKGA 253 (624)
T ss_pred ---------cc-c---------cccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEEEeEeccCC
Confidence 00 0 124799999999999999999 9999999999999888999999999876544
|
|
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.4e-14 Score=149.89 Aligned_cols=118 Identities=25% Similarity=0.360 Sum_probs=96.3
Q ss_pred CCCcccccchHHHHHHHHh-----------CCCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCC-CchhhHH
Q 040733 481 SGFGSMGFGLPAAMGAAVA-----------NPGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQ-YLGMNVE 546 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA-----------~p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~-~~g~~~~ 546 (643)
++++.||+++|.|+|+++| .+++.||+++|||++... ..+|.+|..+++|+++||.||+ ++++...
T Consensus 191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~ 270 (433)
T PLN02374 191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 270 (433)
T ss_pred CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceee
Confidence 5678999999999999998 367899999999999865 4579999999999999999988 4444210
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH------HHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV------RAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL------~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
. . ...+|+.+.|++||+++++|+..+.+ +++++++.+.++|+|||+.+.+..
T Consensus 271 ~----------~----------t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~ 328 (433)
T PLN02374 271 R----------A----------TSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 328 (433)
T ss_pred e----------c----------cCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecC
Confidence 0 0 13479999999999999999877755 577777777899999999996653
|
|
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=139.37 Aligned_cols=179 Identities=17% Similarity=0.131 Sum_probs=133.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHh----CCCCeE
Q 040733 430 FGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVA----NPGAIV 505 (643)
Q Consensus 430 ~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA----~p~~~V 505 (643)
.+..+....+++.|.+.+.+ +.|++.|+|+...|+..+.. . | |-.....+.||-+.+.|.|.+.| .++++|
T Consensus 20 ~C~GCg~~~~~~~l~~a~g~-~~vi~~~iGC~s~~~~~~p~-~-~--~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~V 94 (299)
T PRK11865 20 ACAGCGAAIAMRLALKALGK-NTVIVVATGCLEVITTPYPE-T-A--WNVPWIHVAFENAAAVASGIERAVKALGKKVNV 94 (299)
T ss_pred CCcCCCcHHHHHHHHHHcCC-CEEEEeCCCcccccCccCcC-C-c--cccccchhhhcchHHHHHHHHHHHHHhcCCCeE
Confidence 46779999999999999987 99999999998776433211 1 1 11122347788899999998877 456789
Q ss_pred EEEecCccccC-CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC-----CCCCCCHHHHHh
Q 040733 506 VDIDGDGSFIM-NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK-----SEIFPDMLKFAE 579 (643)
Q Consensus 506 v~i~GDGsf~m-~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~-----~~~~~d~~~lA~ 579 (643)
|++.|||+|.. .++.|..+.+.+.++++||+||+.|++...+.....+.... +.+ .|... .....|+..+|.
T Consensus 95 v~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~-t~t-sp~Gk~~~G~~~~kkd~~~Ia~ 172 (299)
T PRK11865 95 VAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGAS-TTT-SPAGKYSRGEDRPKKNMPLIMA 172 (299)
T ss_pred EEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcc-ccc-CCCCcccCCCCCCCCCHHHHHH
Confidence 99999999876 58999999999999999999999999875332211110000 000 11111 234679999999
Q ss_pred HCCCCEE---EeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 580 ACGIPAA---RVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 580 a~G~~~~---~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
++|+.|+ .+.++.++.+++++|++.+||.+|+|..+
T Consensus 173 a~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~v~sP 211 (299)
T PRK11865 173 AHGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQVLQP 211 (299)
T ss_pred HcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 9999887 45788999999999999999999999864
|
|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.7e-13 Score=134.37 Aligned_cols=178 Identities=14% Similarity=0.086 Sum_probs=130.2
Q ss_pred CCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhC-----CCCeE
Q 040733 431 GEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVAN-----PGAIV 505 (643)
Q Consensus 431 ~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~-----p~~~V 505 (643)
+..+...-.++.+.+.+.+ +.|++.|+|+.......+ ++. .+-.+.....||.+++.|.|++.|. ++..|
T Consensus 21 C~GCG~~~~~~~l~~~lg~-~~v~~~~iGC~~~~~g~~-p~~---~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~V 95 (300)
T PRK11864 21 CPGCGAPLGLRYLLKALGE-KTVLVIPASCSTVIQGDT-PKS---PLTVPVLHTAFAATAAVASGIEEALKARGEKGVIV 95 (300)
T ss_pred CCCCCCHHHHHHHHHHhCC-CeEEEeCCCccceecCCC-Ccc---cccccceeehhhChHHHHHHHHHHHHhhCCCCcEE
Confidence 4567777788899998887 899999999875432221 211 1222333478999999999999984 45678
Q ss_pred EEEecCccccC-CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC
Q 040733 506 VDIDGDGSFIM-NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP 584 (643)
Q Consensus 506 v~i~GDGsf~m-~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~ 584 (643)
+++.|||++.. .++.|..|.+.++|+++||.||+.|++...+.....+.... +. -.|........|..+++.++|+.
T Consensus 96 va~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~-t~-tsp~G~~~~kkdi~~i~~a~g~~ 173 (300)
T PRK11864 96 VGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAW-TT-TTPGGKREHKKPVPDIMAAHKVP 173 (300)
T ss_pred EEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCc-cc-cCCCCCcCCCCCHHHHHHHcCCC
Confidence 88999999876 58889999999999999999999999875432221111100 00 01222234567999999999998
Q ss_pred EE---EeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 585 AA---RVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 585 ~~---~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
++ .+.++.++.+++++|++.+||.+|++..+
T Consensus 174 yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~~~sp 207 (300)
T PRK11864 174 YVATASIAYPEDFIRKLKKAKEIRGFKFIHLLAP 207 (300)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 87 34577899999999999999999999864
|
|
| >PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.9e-13 Score=123.35 Aligned_cols=104 Identities=23% Similarity=0.259 Sum_probs=86.8
Q ss_pred HHHHHHHHHhCCCcEEEEcCCchh---hHHHHHHHHHHhCCceeecCC------CCCCCCCCCCCcccccCCCCcHHHHH
Q 040733 261 LRQTLKLIVESKNPVLCVGGGCLN---SSEELRKFVGLTGIPVTCTTM------GLGLFPCTDELCLRMVGMFGTVYANY 331 (643)
Q Consensus 261 i~~~~~~L~~AkrPvIl~G~g~~~---~~~~l~~lae~lg~PV~tt~~------gkg~~~~~hpl~lG~~g~~~~~~~~~ 331 (643)
-++++++|++||||+|++|.|+.. +.+++.+|+|++++||++|++ +||++|+ |+++|.+|..++....+
T Consensus 24 p~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~lg~~~~~p~~e 101 (171)
T PRK00945 24 PKIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHELTNYLKDPNWK 101 (171)
T ss_pred HHHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHHHhhccCchhh
Confidence 467889999999999999999965 567899999999999999998 8999998 99999999999888888
Q ss_pred hh---hcCCEEEEecCccCc--cccCccccccCCceEEEEc
Q 040733 332 AV---NECDLLLAAGVRFNE--RMTSKLEDFATRAKIVHID 367 (643)
Q Consensus 332 ~l---~~aDlvL~vG~~~~~--~~t~~~~~~~~~~~iI~Id 367 (643)
.+ .++|+||.+|+++.- +.-..+..|.+ .|.|.|+
T Consensus 102 ~~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~ 141 (171)
T PRK00945 102 GLDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITID 141 (171)
T ss_pred hhcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEec
Confidence 88 799999999999852 22222334555 6777765
|
|
| >TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-13 Score=122.70 Aligned_cols=104 Identities=26% Similarity=0.367 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCC------CCCCCCCCCCcccccCCCCcHHHHHh
Q 040733 261 LRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMG------LGLFPCTDELCLRMVGMFGTVYANYA 332 (643)
Q Consensus 261 i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~g------kg~~~~~hpl~lG~~g~~~~~~~~~~ 332 (643)
-++++++|++||||+|++|.|+. ++.+++++|+|++|+||++|+++ ||++ +||.++|.+|..++....+.
T Consensus 17 p~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~g~~~~~p~~e~ 94 (162)
T TIGR00315 17 PKLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEITQFLADPSWEG 94 (162)
T ss_pred HHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHHHHhccCchhhh
Confidence 46788999999999999999997 78899999999999999999988 9999 68899999998888888899
Q ss_pred h---hcCCEEEEecCccC--ccccCccccccCCceEEEEc
Q 040733 333 V---NECDLLLAAGVRFN--ERMTSKLEDFATRAKIVHID 367 (643)
Q Consensus 333 l---~~aDlvL~vG~~~~--~~~t~~~~~~~~~~~iI~Id 367 (643)
+ .++|+||.+|+++. ++.-..+..|. +.|.|.||
T Consensus 95 ~~g~g~~DlvlfvG~~~y~~~~~ls~lk~f~-~~~~i~l~ 133 (162)
T TIGR00315 95 FDGEGNYDLVLFLGIIYYYLSQMLSSLKHFS-HIVTIAID 133 (162)
T ss_pred ccCCCCcCEEEEeCCcchHHHHHHHHHHhhc-CcEEEEec
Confidence 9 89999999999983 11111233455 66777666
|
Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis. |
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=125.77 Aligned_cols=110 Identities=20% Similarity=0.270 Sum_probs=89.0
Q ss_pred CcccccchHHHHHHHHhCC----CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccc
Q 040733 483 FGSMGFGLPAAMGAAVANP----GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANR 556 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p----~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~ 556 (643)
.|++|.++|.|+|++++.+ +++|++++|||+|+ +...+|.+|.+++.|+++ |+|||+|++..
T Consensus 74 ~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~-vvdnN~~~~~~----------- 141 (195)
T cd02007 74 TGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIV-ILNDNEMSISP----------- 141 (195)
T ss_pred CCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEE-EEECCCcccCC-----------
Confidence 4889999999999999865 68999999999998 788999999999888877 55555555320
Q ss_pred cccccCCCCCCCCCCCCHHHHHhHCCCCEEE-e--CChhHHHHHHHHHHhCCCcEEEEEEeCCC
Q 040733 557 ANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-V--TKKKDVRAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 557 ~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V--~~~~eL~~al~~al~~~gp~lIeV~v~~~ 617 (643)
..-++..+++++|..... + .+.+++.++++++.+.++|++|++.+...
T Consensus 142 -------------~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~~~T~kg 192 (195)
T cd02007 142 -------------NVGTPGNLFEELGFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHVVTKKG 192 (195)
T ss_pred -------------CCCCHHHHHHhcCCCccceECCCCHHHHHHHHHHHHhCCCCEEEEEEEecc
Confidence 001577888899987653 4 68899999999998888999999998653
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-12 Score=142.01 Aligned_cols=123 Identities=19% Similarity=0.255 Sum_probs=98.3
Q ss_pred CCcccccchHHHHHHHHhC-----CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 482 GFGSMGFGLPAAMGAAVAN-----PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~-----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
..|++|.++|.|+|+++|. ++++|+|++|||+++ |++++|.+|.+++.|+ ++|+||++|++-... ...
T Consensus 115 ~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nl-i~IvdnN~~~i~~~~-~~~--- 189 (580)
T PRK05444 115 GAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDL-IVILNDNEMSISPNV-GAL--- 189 (580)
T ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCE-EEEEECCCCcCCCcc-hhh---
Confidence 3488999999999999985 678999999999995 8899999999999888 688888888742110 000
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
... ....++.+++++||++++.+ ++.+++.++|+++.+.++|++|++.+......
T Consensus 190 ---~~~--------~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~T~kg~G~ 247 (580)
T PRK05444 190 ---SNY--------LARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVVTKKGKGY 247 (580)
T ss_pred ---hhh--------hccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCcCC
Confidence 000 11246778999999999864 79999999999999888999999999887653
|
|
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.3e-11 Score=120.66 Aligned_cols=174 Identities=20% Similarity=0.262 Sum_probs=126.5
Q ss_pred CCCCCHHHHHHHHHhcC--------CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCC
Q 040733 431 GEEIPPQYAIQILNELT--------DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPG 502 (643)
Q Consensus 431 ~~~i~~~~~~~~L~~~l--------~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~ 502 (643)
+..+...-+++.|.+.+ +.++..|++++|....|.. |+. .+.....-|-+.+.|.|.++|++.
T Consensus 18 CpGCG~~~~l~~i~~a~~~~~~l~~~~~c~~vvsgig~s~~~~~-y~~--------~~~~hs~~gra~a~atGik~A~~~ 88 (294)
T COG1013 18 CPGCGEFIILKLLTQALGDRAELGNATGCSVVVSGIGCSTRWPV-YVN--------PPWVHSLHGRAAAVATGIKLANPA 88 (294)
T ss_pred CCCCCchHHHHHHHHhccchhhhccCCCCeEEEeCCccCccccc-ccc--------CCceeeccCcchhhHHHHHHhccC
Confidence 45566666666665552 2226778888887765543 222 122235667899999999999999
Q ss_pred CeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCC-CCCCHHHHHhH
Q 040733 503 AIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSE-IFPDMLKFAEA 580 (643)
Q Consensus 503 ~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~-~~~d~~~lA~a 580 (643)
..||++.||| ++-..++.|..+.+.|.+|++||+||+.||+..-+.......... +.+ .|..... ...|...+|-+
T Consensus 89 l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G~~-t~t-~p~Gk~~~~k~d~~~la~a 166 (294)
T COG1013 89 LSVIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKGAK-TKT-TPYGKRSEKKKDPGLLAMA 166 (294)
T ss_pred CeEEEEecchhHhhhhhHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCCce-eee-cCCCCCcCCCCCHHHHHHH
Confidence 9999999999 777899999999999999999999999999876433221111000 000 1221112 33499999999
Q ss_pred CCCCEE---EeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 581 CGIPAA---RVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 581 ~G~~~~---~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
+|..++ .+.++.++...+++|++..||.+|+|..+
T Consensus 167 ~G~~yVAr~~~~~~~~l~~~i~kA~~~~Gps~I~v~sP 204 (294)
T COG1013 167 AGATYVARASVGDPKDLTEKIKKAAEHKGPSFIDVLSP 204 (294)
T ss_pred CCCCeEEEecccCHHHHHHHHHHHHhccCCeEEEEecC
Confidence 999876 56788999999999999999999999864
|
|
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-07 Score=100.78 Aligned_cols=155 Identities=22% Similarity=0.189 Sum_probs=125.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
-++|.++++....+.|++.+.+||++++.++++.|.+. +..++..-+|.+|..||.|.+.+..| ++.+|||||+
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~Gl 83 (352)
T PRK07119 6 LMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR--VMTSSSSPGI 83 (352)
T ss_pred eehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC--EEeecCcchH
Confidence 57999999999999999999999999999999999763 36899999999999999999988777 5567899999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhh--------ccceeeeEeCCcCcHHHHHHHHHHHhhc
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR--------YMTKHNYLVLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~--------~~tk~~~~v~~~~~i~~~l~~A~~~A~s 216 (643)
+-..-++.-|.-.++|++++-.+++..-.| ..| .+|-+++- ..-.-.+...+++++-....+||++|..
T Consensus 84 ~lm~E~l~~a~~~e~P~v~v~v~R~~p~~g--~t~-~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~ 160 (352)
T PRK07119 84 SLKQEGISYLAGAELPCVIVNIMRGGPGLG--NIQ-PSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADK 160 (352)
T ss_pred HHHHHHHHHHHHccCCEEEEEeccCCCCCC--CCc-chhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888877633222 233 34555432 2223445567888999999999999987
Q ss_pred CCCCeEEEEcccc
Q 040733 217 GRPGPVLIDIPVD 229 (643)
Q Consensus 217 ~~~GPV~i~iP~D 229 (643)
.+ -||.+..-..
T Consensus 161 ~~-~PViv~~D~~ 172 (352)
T PRK07119 161 YR-NPVMVLGDGV 172 (352)
T ss_pred hC-CCEEEEcchh
Confidence 55 5998877543
|
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-09 Score=121.25 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=93.8
Q ss_pred CCcccccchHHHHHHHHhCCCCeEEEEecCccc--cCCHHHHHHHHHhCCCeEEEEEeCCCchhh-------HHHHHHhh
Q 040733 482 GFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSF--IMNLQELAAIKAENIPVKILLINNQYLGMN-------VEYEDRYF 552 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf--~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~-------~~~q~~~~ 552 (643)
+.|+||+++|+|+|++++.++++|++++|||+| .+...++.+|.++++|+++ |+||++|.+- +.+.+-..
T Consensus 121 ~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~-I~dnN~~~i~~~~~~~~~~l~~~~~ 199 (641)
T PRK12571 121 SSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIV-ILNDNEMSIAPPVGALAAYLSTLRS 199 (641)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEE-EEECCCeeecCCccHHHHHHHHHhc
Confidence 357899999999999999989999999999999 5678999999999998755 6677766542 11111100
Q ss_pred ccccc------cccc-CCCCCCC----------CCCCCHHHHHhHCCCCEE-Ee--CChhHHHHHHHHHHh-CCCcEEEE
Q 040733 553 EANRA------NSFL-GDPLRKS----------EIFPDMLKFAEACGIPAA-RV--TKKKDVRAAIQLMLE-TPGPYLLD 611 (643)
Q Consensus 553 ~~~~~------~~~~-g~p~~~~----------~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al~~al~-~~gp~lIe 611 (643)
...+. ...+ ..|.... ....-....-++||++++ .| ++.++|.++|+++.+ .++|.+|.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~~~~P~~I~ 279 (641)
T PRK12571 200 SDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARADGPVLVH 279 (641)
T ss_pred CcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhCCCCCEEEE
Confidence 00000 0000 0000000 000011467899999999 56 488999999998876 68999999
Q ss_pred EEeCCCCCc
Q 040733 612 VMVSYQEHV 620 (643)
Q Consensus 612 V~v~~~~~~ 620 (643)
+.+-.....
T Consensus 280 ~~T~kGkG~ 288 (641)
T PRK12571 280 VVTEKGRGY 288 (641)
T ss_pred EEecCccCc
Confidence 999876543
|
|
| >TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-07 Score=106.62 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=125.2
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.++|.++++....+.|++.+++||+++..++.+.|.+. ++.+++.-+|.+|..||.|.+.+..| ++.+|||||+
T Consensus 195 ~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~aG~R--a~taTSg~Gl 272 (562)
T TIGR03710 195 LISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYAGAR--AMTATSGPGF 272 (562)
T ss_pred EeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhcCCc--eeecCCCCCh
Confidence 47999999999999999999999999999999999764 49999999999999999999987776 5668999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhcc-c------eeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM-T------KHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~-t------k~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
.=+.-++.-|...++|+|++.+|++-...|-. -..+|.+++... + .-.....++++.-....+||++|..-
T Consensus 273 ~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~--t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~ 350 (562)
T TIGR03710 273 ALMTEALGLAGMTETPLVIVDVQRGGPSTGLP--TKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKY 350 (562)
T ss_pred hHhHHHHhHHHhccCCEEEEEcccCCCCCCCC--CCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999984433211 112333333221 1 23444567788888999999999864
Q ss_pred CCCeEEEEcccch
Q 040733 218 RPGPVLIDIPVDV 230 (643)
Q Consensus 218 ~~GPV~i~iP~Dv 230 (643)
.=||.+..-.-+
T Consensus 351 -~~PViv~~D~~l 362 (562)
T TIGR03710 351 -QTPVIVLSDQYL 362 (562)
T ss_pred -cCCEEEEechHH
Confidence 378887764443
|
The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. |
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-08 Score=106.34 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=124.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
-++|.++++....+.||+.+++||++...++.+.|.+. +..++..-+|.+|..||.|.+.+..| ++.+|||||+
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~TaTSg~Gl 83 (376)
T PRK08659 6 FLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWAGAK--AMTATSGPGF 83 (376)
T ss_pred EeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhhCCC--eEeecCCCcH
Confidence 47999999999999999999999999999999999763 36899999999999999999987776 6678999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCC---CCCCccCHHHHhh---ccceeeeEeCCcCcHHHHHHHHHHHhhcCC
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGT---DAFQEIPVVEVTR---YMTKHNYLVLDVDDIPRIIKEAFFIATSGR 218 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~---~~~Q~~d~~~~~~---~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~ 218 (643)
+-.+-++.-|...++|+|++..+++....|- ..+++.+.. .+. .+-...+...+++++-....+||++|...+
T Consensus 84 ~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~-~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~ 162 (376)
T PRK08659 84 SLMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQA-RWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYR 162 (376)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHHHH-hcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHC
Confidence 9999999888899999999999987543231 122222111 111 223345566788889999999999998765
Q ss_pred CCeEEEEccc
Q 040733 219 PGPVLIDIPV 228 (643)
Q Consensus 219 ~GPV~i~iP~ 228 (643)
-||.+..-.
T Consensus 163 -~PViv~~D~ 171 (376)
T PRK08659 163 -TPVIVLADE 171 (376)
T ss_pred -CCEEEEech
Confidence 599987755
|
|
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-08 Score=104.39 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=124.9
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
-++|.++++....+.|++.+.+||++...++.+.|.+. +..++.+-+|.+|..||.|-+.+..| ++.+|||||+
T Consensus 5 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~G~ 82 (375)
T PRK09627 5 ISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK--SMTASSGPGI 82 (375)
T ss_pred EechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC--EEeecCCchH
Confidence 47999999999999999999999999999999988763 47899999999999999999988777 6678999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhh-------ccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR-------YMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~-------~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
+-..-.+.-|....+|++++..+++....|.- -.++|-++.. .+.+..+...+++++-....+||++|..-
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p--~~~~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~ 160 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLP--TRVAQGDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERF 160 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCCC--CccchHHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998763322211 1112222221 23344556678888889999999999865
Q ss_pred CCCeEEEEcccc
Q 040733 218 RPGPVLIDIPVD 229 (643)
Q Consensus 218 ~~GPV~i~iP~D 229 (643)
+ =||.+..-..
T Consensus 161 ~-~PViv~~D~~ 171 (375)
T PRK09627 161 M-TPVFLLLDET 171 (375)
T ss_pred c-CceEEecchH
Confidence 4 7998877553
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=116.83 Aligned_cols=118 Identities=25% Similarity=0.262 Sum_probs=95.3
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|.+|.+++.|+|.|+|.. +..|+|++|||+++-. ...+..|..+++|-+|+|+|||+|.+-..
T Consensus 104 tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~ 183 (654)
T PLN02790 104 TGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGD 183 (654)
T ss_pred CCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCC
Confidence 4888999999999988754 4679999999999875 45588899999998888999998876321
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe----CChhHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV----TKKKDVRAAIQLMLE-TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V----~~~~eL~~al~~al~-~~gp~lIeV~v~~~~~ 619 (643)
.. . ....|+.+.+++||++++.| ++.+++.++++++.+ .++|+||++.+.....
T Consensus 184 ~~----------~---------~~~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~P~lI~~~T~kG~G 242 (654)
T PLN02790 184 TE----------I---------AFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIGYG 242 (654)
T ss_pred cc----------c---------ccchhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeEEEEEEEeecCC
Confidence 10 0 11347789999999999999 578899999999887 7899999999976654
|
|
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=104.81 Aligned_cols=116 Identities=28% Similarity=0.397 Sum_probs=81.4
Q ss_pred cccccchHHHHHHHHhC----CCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccccc
Q 040733 484 GSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRA 557 (643)
Q Consensus 484 g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~ 557 (643)
+.+|..+|.|.|.++|. .+.-++++.|||+..-. +.| |..|..+++|+++||-||+ |++....+..
T Consensus 101 ~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~-~aist~~~~~------- 172 (300)
T PF00676_consen 101 SPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQ-YAISTPTEEQ------- 172 (300)
T ss_dssp SSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEES-EETTEEHHHH-------
T ss_pred ccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCC-cccccCcccc-------
Confidence 56677788888887763 45679999999996654 555 7778899999977777776 6664222111
Q ss_pred ccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHH----hCCCcEEEEEEeCCCC
Q 040733 558 NSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLML----ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 558 ~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al----~~~gp~lIeV~v~~~~ 618 (643)
....++...|++||+++++|+ ++.++.+++++|+ +.+||+|||+.+.+-.
T Consensus 173 -----------~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~ 228 (300)
T PF00676_consen 173 -----------TASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLR 228 (300)
T ss_dssp -----------CSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS
T ss_pred -----------ccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCC
Confidence 123567889999999999994 6666666666655 4689999999997653
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.5e-08 Score=100.83 Aligned_cols=184 Identities=16% Similarity=0.110 Sum_probs=126.2
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhcccc-------CCCeEEecC--CCcccccchHHHHHHHH-
Q 040733 429 TFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYK-------RARQLLTSS--GFGSMGFGLPAAMGAAV- 498 (643)
Q Consensus 429 ~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~-------~p~~~~~~~--~~g~mG~glpaAiGaal- 498 (643)
..+..|...-.++.|.+++.+ +.+|+...|+...|+..+-..+ ++-.|..+. .-+..|+|+-.|+=...
T Consensus 7 gACaGCget~y~klltqlfG~-r~iIaNatGCssI~gg~~P~tp~~~~~~g~Gpaw~nslFEdnAe~g~G~~~a~~~~r~ 85 (365)
T cd03377 7 GACAGCGETPYVKLLTQLFGD-RMVIANATGCSSIYGGSAPTTPYTTNAKGRGPAWANSLFEDNAEFGLGMRLAVDQRRE 85 (365)
T ss_pred ccCCCCchHHHHHHHHHHhCC-CeEEEecCCCceeecCCCCCCcceeccCCCCCccccccccchhHHHhHHHHHHHHHHH
Confidence 346778888889999999988 8999999998888875541100 011222221 12455666655553331
Q ss_pred -----------------------------------------------h-----------C----CCCeEEEEecCc-ccc
Q 040733 499 -----------------------------------------------A-----------N----PGAIVVDIDGDG-SFI 515 (643)
Q Consensus 499 -----------------------------------------------A-----------~----p~~~Vv~i~GDG-sf~ 515 (643)
. . +...||++.||| ++-
T Consensus 86 ~~~~~v~~~~~~~~~~~l~~~~~~wl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~d~l~~~~v~v~gGDG~~yd 165 (365)
T cd03377 86 RARELVQKLIEKIGDEELKTLLNAWLATEDDIEESRERVAKLKPLLAAEKDELAKELLSLADYLVKKSVWIIGGDGWAYD 165 (365)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHccccHHHHHHHHHHHHHHHhccCcHHHHHHHhhhhhccccceEEEecchhhhc
Confidence 1 1 125899999999 567
Q ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE---EeC-Ch
Q 040733 516 MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA---RVT-KK 591 (643)
Q Consensus 516 m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~---~V~-~~ 591 (643)
..++.|..+.+.|.+|++||+||..|++...+......... .+. ..|.......-|...+|.++|..|+ .+. ++
T Consensus 166 IG~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga-~t~-tsp~Gk~~~kkd~~~ia~a~g~~YVA~~s~~~~~ 243 (365)
T cd03377 166 IGYGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGA-VAK-FAAAGKRTGKKDLGMIAMSYGNVYVAQIALGAND 243 (365)
T ss_pred cchhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcC-cCc-cCCCCCCCCCcCHHHHHHHcCCCEEEEEecccCH
Confidence 88999999999999999999999999987422111100000 000 0222223345699999999999876 343 88
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 592 KDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 592 ~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
.++..++++|++.+||.+|+|..+
T Consensus 244 ~~~~~~i~eA~~~~Gps~I~v~sP 267 (365)
T cd03377 244 NQTLKAFREAEAYDGPSLIIAYSP 267 (365)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcc
Confidence 999999999999999999999975
|
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.5e-08 Score=109.55 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=90.9
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
+.|..|.+++.|+|.++|. .++.||+++|||++... ...|..|..+++|+++||-|| +|.+-.....
T Consensus 111 ~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN-~~si~~~~~~------ 183 (581)
T PRK12315 111 TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDN-QMSIAENHGG------ 183 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECC-CCcCCCCCch------
Confidence 3355666899999988873 35789999999999973 555889999998876655555 4655311000
Q ss_pred ccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcc
Q 040733 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVV 621 (643)
Q Consensus 556 ~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~ 621 (643)
....+.. .......|...++++||++++.+ .+.+++.++++++.+.+||+||+|.+.+.....
T Consensus 184 -~~~~l~~--~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 184 -LYKNLKE--LRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred -hhhhhhh--hhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEEeecCCCCC
Confidence 0000000 00012346778999999999988 378899999999888889999999999876543
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.3e-08 Score=111.77 Aligned_cols=117 Identities=23% Similarity=0.267 Sum_probs=93.7
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|.+|.+++.|+|.|+|.. +.+|+|++|||+++=. ...|..|..++|+.+|+|+|||++.+-..
T Consensus 115 tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~ 194 (661)
T PTZ00089 115 TGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGN 194 (661)
T ss_pred CcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccC
Confidence 4889999999999988742 5679999999999864 45588899999998888999998876321
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---C-ChhHHHHHHHHHHhC-CCcEEEEEEeCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---T-KKKDVRAAIQLMLET-PGPYLLDVMVSYQE 618 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~-~~~eL~~al~~al~~-~gp~lIeV~v~~~~ 618 (643)
.. . ....++.+..++||++++.| + +.++|.++++++.+. ++|++|++.+-+..
T Consensus 195 ~~----------~---------~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~~I~~~T~kG~ 252 (661)
T PTZ00089 195 TD----------L---------SFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKLIIVKTTIGY 252 (661)
T ss_pred cc----------c---------ccCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEEeeecC
Confidence 10 0 12357889999999999999 2 789999999998874 79999999997643
|
|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=98.87 Aligned_cols=119 Identities=26% Similarity=0.340 Sum_probs=84.0
Q ss_pred CCCcccccchHHHHHHHHhC-----CCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 481 SGFGSMGFGLPAAMGAAVAN-----PGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~-----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
++.+.+|..+|-|.|+++|. .++-++++.|||+..-. +-| |.-|.-+++|++++|-|| +|+|- .+...
T Consensus 133 ~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN-~yAiS--vp~~~-- 207 (358)
T COG1071 133 GGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENN-QYAIS--VPRSR-- 207 (358)
T ss_pred CCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecC-Cceee--cchhh--
Confidence 34578888999999998873 33479999999999875 555 777889999977666555 57774 11110
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCCh--hHH----HHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKK--KDV----RAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~--~eL----~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
+ .....++.=|.+||+++++|+-. -.+ ++|.+++.+.+||+|||+.+.|..
T Consensus 208 -----q---------~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~ 264 (358)
T COG1071 208 -----Q---------TAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYG 264 (358)
T ss_pred -----c---------ccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecC
Confidence 0 12234666788999999999643 333 445555556789999999998764
|
|
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-07 Score=97.50 Aligned_cols=152 Identities=15% Similarity=0.072 Sum_probs=120.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC------CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS------NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~------~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~Gp 142 (643)
-++|.++++......|++.+++||++...++.+.|.+. ++.++..-+|.+|..||.|.+.+..| ++.+||||
T Consensus 5 ~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR--a~TaTSg~ 82 (390)
T PRK08366 5 VVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR--AFTATSAQ 82 (390)
T ss_pred EeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeCcc
Confidence 47999999999999999999999999999999988652 37788888999999999999988887 56679999
Q ss_pred hhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhh-ccceeee-EeCCcCcHHHHHHHHHHHhhcCCCC
Q 040733 143 GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR-YMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPG 220 (643)
Q Consensus 143 G~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~-~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~G 220 (643)
|+.=+.-+|.-|...++|+|+.-.+++-.- + ... ..||.+++. -.+.|.. ...++++.-....+||++|..-+ -
T Consensus 83 Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~-~~~-~~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~-~ 158 (390)
T PRK08366 83 GLALMHEMLHWAAGARLPIVMVDVNRAMAP-P-WSV-WDDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVN-L 158 (390)
T ss_pred cHHHHhhHHHHHHhcCCCEEEEEeccCCCC-C-CCC-cchhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHC-C
Confidence 999999999999999999998888776441 1 111 123444332 2233322 24678888999999999998644 7
Q ss_pred eEEEEc
Q 040733 221 PVLIDI 226 (643)
Q Consensus 221 PV~i~i 226 (643)
||.+..
T Consensus 159 PViv~~ 164 (390)
T PRK08366 159 PAMVVE 164 (390)
T ss_pred CEEEEe
Confidence 888776
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.8e-08 Score=109.49 Aligned_cols=118 Identities=21% Similarity=0.248 Sum_probs=93.6
Q ss_pred CcccccchHHHHHHHHhC--------------CCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVAN--------------PGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~--------------p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|++|.|++.|+|.|+|. .+.+|+|++|||+++-. ..| +..|..++||.+|+|+|||+|.+-..
T Consensus 109 tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~ 188 (653)
T TIGR00232 109 TGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGA 188 (653)
T ss_pred CcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeeccc
Confidence 388999999999998873 25679999999999985 444 88899999999999999998876321
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe-C--ChhHHHHHHHHHHhC-CCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV-T--KKKDVRAAIQLMLET-PGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V-~--~~~eL~~al~~al~~-~gp~lIeV~v~~~~~ 619 (643)
.. . ....++.+..++||+++.+| + +.+++.++++++.+. ++|++|++.+.+...
T Consensus 189 ~~----------~---------~~~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~~T~~g~G 246 (653)
T TIGR00232 189 VD----------G---------SFTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEVTTTIGFG 246 (653)
T ss_pred cc----------c---------ccCccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeeccc
Confidence 10 0 11358999999999999999 3 678889999988776 489999999976543
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-07 Score=98.33 Aligned_cols=156 Identities=18% Similarity=0.117 Sum_probs=122.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC---C---CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS---N---IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~---i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~Gp 142 (643)
-++|.+++++...+.|++.+++||+++..++.+.|.+. | ..+|..-+|.+|..||.|.+.+..| ++..||||
T Consensus 12 ~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~aGaR--a~TaTS~~ 89 (407)
T PRK09622 12 VWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAAAGGR--VATATSSQ 89 (407)
T ss_pred ecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHhhCcC--EEeecCcc
Confidence 47999999999999999999999999999999998653 2 5788999999999999999977766 66789999
Q ss_pred hhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhc-cce-eeeEeCCcCcHHHHHHHHHHHhhcC-CC
Q 040733 143 GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRY-MTK-HNYLVLDVDDIPRIIKEAFFIATSG-RP 219 (643)
Q Consensus 143 G~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~-~tk-~~~~v~~~~~i~~~l~~A~~~A~s~-~~ 219 (643)
|+.=+.-+|.-|...++|++++..++.-.. . -..+ .||.+++.. .+. ..+...++++.-+...+||++|... -.
T Consensus 90 Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~-~-~~i~-~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~ 166 (407)
T PRK09622 90 GLALMVEVLYQASGMRLPIVLNLVNRALAA-P-LNVN-GDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVR 166 (407)
T ss_pred hHHHHhhHHHHHHHhhCCEEEEEeccccCC-C-cCCC-chHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999888888776321 1 1111 244444332 222 2334567888889999999999764 14
Q ss_pred CeEEEEcccc
Q 040733 220 GPVLIDIPVD 229 (643)
Q Consensus 220 GPV~i~iP~D 229 (643)
-||.+..-.-
T Consensus 167 ~Pviv~~Dg~ 176 (407)
T PRK09622 167 LPVIVNQDGF 176 (407)
T ss_pred CCEEEEechh
Confidence 7998877544
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=108.04 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=93.8
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|++|.|++.|+|.|+|.. +.+|+|++|||.++=. ..| +..|..++||.+|+|++||++.+-..
T Consensus 113 tG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~ 192 (663)
T PRK12754 113 TGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGH 192 (663)
T ss_pred CCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcc
Confidence 3889999999999988731 5779999999999975 444 88899999998888888888775321
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE-eC--ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VT--KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V~--~~~eL~~al~~al~-~~gp~lIeV~v~~~~~ 619 (643)
.. . ....|+.+-.++||+++++ |+ +.+++.+|++++.. .++|++|++.+-....
T Consensus 193 ~~----------~---------~~~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~~T~~g~G 250 (663)
T PRK12754 193 VE----------G---------WFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCKTIIGFG 250 (663)
T ss_pred hh----------h---------ccCccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEEEeeeccC
Confidence 10 0 1235899999999999998 64 78899999998875 5899999999987654
|
|
| >PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=94.31 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=103.4
Q ss_pred HHHHCCCCEEEEccCCCcHHHHHHHhh---CC-C--eEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH
Q 040733 79 ALERQGVTTVFAYPGGASIEIHQSLTR---SN-I--RSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLM 152 (643)
Q Consensus 79 ~L~~~GV~~vFg~PG~~~~~l~~al~~---~~-i--~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~ 152 (643)
...+.|++.+++||++...++++.+.+ .+ + +++..-+|.+|..||.|.+.+..| ++..|+|||+.-..-+|.
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~aG~r--a~t~ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASAAGAR--AMTATSGPGLNLMAEPLY 79 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHHTT----EEEEEECCHHHHHCCCHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHhcCCc--eEEeecCCcccccHhHHH
Confidence 567889999999999999999998764 23 4 999999999999999999976665 345799999999999999
Q ss_pred HhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccch
Q 040733 153 DAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV 230 (643)
Q Consensus 153 ~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv 230 (643)
-|...++|++++..+++....|....++-+..-..+..-.-.....++++.-.....||++|..-+ -||.+..-.-+
T Consensus 80 ~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~-~PViv~~Dg~~ 156 (230)
T PF01855_consen 80 WAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQ-TPVIVLFDGFL 156 (230)
T ss_dssp HHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHT-SEEEEEEECCC
T ss_pred HHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHC-CCEEEEechhh
Confidence 999999999999988775444322222222222333333345556788899999999999998744 79988775443
|
This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B .... |
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=108.22 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=94.2
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|.+|.|++.|+|.|+|.. +.+|+|++|||+++=. ...+..|..++||-+|+|+|||++.+-.
T Consensus 112 ~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~ 191 (663)
T PRK12753 112 TTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDG 191 (663)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCC
Confidence 34889999999999988731 4689999999999875 4458889999999888888988877642
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE-eC--ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-VT--KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V~--~~~eL~~al~~al~-~~gp~lIeV~v~~~~~ 619 (643)
... . ....|+.+..++||++++. |+ +.+++.++++++.+ .++|++|++.+-....
T Consensus 192 ~~~----------~---------~~~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~~T~kG~G 250 (663)
T PRK12753 192 ETE----------G---------WFTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIICRTIIGFG 250 (663)
T ss_pred Chh----------h---------hcChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEEEEeecCC
Confidence 111 0 1134789999999999985 74 78899999998876 4899999999987654
|
|
| >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.8e-07 Score=96.12 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=118.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC------CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS------NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~------~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~Gp 142 (643)
-++|.+++++...+.|++.+++||++...++.+.|.+. +.+++..-+|.+|..||.|.+.+..| ++.+||||
T Consensus 6 ~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~aGaR--a~TaTS~~ 83 (394)
T PRK08367 6 VMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAAGVR--TFTATASQ 83 (394)
T ss_pred eccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeccc
Confidence 37999999999999999999999999999999998762 27788888999999999999988777 66789999
Q ss_pred hhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHh--hccceeeeEeCCcCcHHHHHHHHHHHhhcCC-C
Q 040733 143 GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT--RYMTKHNYLVLDVDDIPRIIKEAFFIATSGR-P 219 (643)
Q Consensus 143 G~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~--~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~-~ 219 (643)
|++=..-.|.-|...++|+++..+++.... ...-+ .||.+++ +..-.......++++.-.....||++|...+ .
T Consensus 84 Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~i~--~d~~D~~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~ 160 (394)
T PRK08367 84 GLALMHEVLFIAAGMRLPIVMAIGNRALSA-PINIW--NDWQDTISQRDTGWMQFYAENNQEALDLILIAFKVAEDERVL 160 (394)
T ss_pred hHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCCcC--cchHHHHhccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999887665432 11111 1222222 2211112223677888889999999998533 2
Q ss_pred CeEEEEccc
Q 040733 220 GPVLIDIPV 228 (643)
Q Consensus 220 GPV~i~iP~ 228 (643)
=||.+..-.
T Consensus 161 ~Pviv~~Dg 169 (394)
T PRK08367 161 LPAMVGFDA 169 (394)
T ss_pred CCEEEEech
Confidence 588877643
|
|
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=94.20 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCcccccchHHHHHHHHhC---------CCCeEEEEecCcccc-C-CHHH-HHHHHHhCCC---eEEEEEeCCCchhhHH
Q 040733 482 GFGSMGFGLPAAMGAAVAN---------PGAIVVDIDGDGSFI-M-NLQE-LAAIKAENIP---VKILLINNQYLGMNVE 546 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~---------p~~~Vv~i~GDGsf~-m-~~~e-L~Ta~~~~lp---v~ivV~NN~~~g~~~~ 546 (643)
+-+.+|..+|-|.|+++|. .+.-+|++.|||+|. . .+.| |.-+.-.++| +++||.|| +|++...
T Consensus 111 npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNN-q~g~sT~ 189 (265)
T cd02016 111 NPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNN-QIGFTTD 189 (265)
T ss_pred CCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeC-CEEEEec
Confidence 3466888888888888774 145678999999973 4 3666 4445666787 66666665 4776432
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe--CChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV--TKKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V--~~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
..+. ....+..+.|++||+++++| .+++++.++.++|++ .+||+|||+.+.|.
T Consensus 190 ~~~~------------------~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~ 248 (265)
T cd02016 190 PRDS------------------RSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRR 248 (265)
T ss_pred HHHh------------------cccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 1111 12357889999999999999 466777777776654 57899999999775
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-07 Score=99.10 Aligned_cols=115 Identities=25% Similarity=0.339 Sum_probs=81.0
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
..+.+|.++|.|+|+++|. .++.++++.|||+..-. +.| |..|..+++|+++||-||+ |++-...+.
T Consensus 136 ~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~-~aist~~~~------ 208 (362)
T PLN02269 136 GHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH-YGMGTAEWR------ 208 (362)
T ss_pred cCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCC-EeccCchhh------
Confidence 3477888999999988874 45789999999997764 444 6778889999777766666 886421111
Q ss_pred ccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh---CCCcEEEEEEeCCC
Q 040733 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE---TPGPYLLDVMVSYQ 617 (643)
Q Consensus 556 ~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~---~~gp~lIeV~v~~~ 617 (643)
.....+|.+ +++++++++|+ ++.++.++++++.+ .+||+|||+.+.+-
T Consensus 209 ------------~~~~~~~~~--~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR~ 261 (362)
T PLN02269 209 ------------AAKSPAYYK--RGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYRY 261 (362)
T ss_pred ------------hccchHHHH--hhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCcC
Confidence 012234553 45788888884 66677777776553 28999999998765
|
|
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-07 Score=99.98 Aligned_cols=118 Identities=20% Similarity=0.208 Sum_probs=87.7
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
-|++|.|++.|+|.|+|.. +.+|+|++|||.++=. ...+..|.+++|+=+|+|+|+|+..+-.
T Consensus 110 tGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg- 188 (332)
T PF00456_consen 110 TGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDG- 188 (332)
T ss_dssp -SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTE-
T ss_pred ccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCC-
Confidence 4899999999999998741 4579999999999874 4558999999999777777777654321
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhC-CCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLET-PGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~-~gp~lIeV~v~~~~~ 619 (643)
.. .. ....|+.+--++||.+.++| ++.++|.+||+++... ++|++|.+.+-....
T Consensus 189 --------~~-~~---------~~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~TvkG~G 247 (332)
T PF00456_consen 189 --------PT-DI---------VFSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIARTVKGKG 247 (332)
T ss_dssp --------EG-GG---------THHSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEEE-TTTT
T ss_pred --------Cc-cc---------ccchHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecceEEecC
Confidence 00 00 11247888999999999998 7899999999999875 899999999976653
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.8e-07 Score=78.53 Aligned_cols=160 Identities=17% Similarity=0.250 Sum_probs=122.0
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
.++++++++.+.|++.|++.++.+|=+..-.++.-+++++ |..|....|..+...+.|.+.+.+||+.++-.|| ..|
T Consensus 2 ~kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsG--lGN 79 (172)
T COG4032 2 YKVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSG--LGN 79 (172)
T ss_pred cccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccC--cch
Confidence 4678999999999999999999999999999998888887 8888888888888888899999999999987755 567
Q ss_pred HHHHHHHhhhC-CCCEEEEeCCCcccccCCCCCCcc---CHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeE
Q 040733 147 IMTGLMDAYSD-SIPILAITGQVSQKLLGTDAFQEI---PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPV 222 (643)
Q Consensus 147 ~~~gl~~A~~~-~vPvlvItg~~~~~~~g~~~~Q~~---d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV 222 (643)
.+++++.-+.- ++|++.|.+.+.....+-.+ |-. -..++++..--..|++.+|++...+|..|+..|..-. .||
T Consensus 80 siNal~SL~~ty~iPl~ml~ShRG~~~E~i~A-QVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s-~pv 157 (172)
T COG4032 80 SINALASLYVTYKIPLLMLASHRGVLKEGIEA-QVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENS-RPV 157 (172)
T ss_pred HHHHHHHHHHHhccchhhhhhccchhhcCCcc-ccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcC-Cce
Confidence 77777776654 79999998866543322211 100 1123454444568889999999999999998887543 577
Q ss_pred EEEcccchh
Q 040733 223 LIDIPVDVQ 231 (643)
Q Consensus 223 ~i~iP~Dv~ 231 (643)
-+-+-..++
T Consensus 158 ~vlls~~~W 166 (172)
T COG4032 158 AVLLSPKYW 166 (172)
T ss_pred EEEechHHh
Confidence 766654444
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=99.03 Aligned_cols=136 Identities=16% Similarity=0.264 Sum_probs=90.6
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHH--HH---
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYE--DR--- 550 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q--~~--- 550 (643)
..|..|.+++.|+|.++|. .+..|++++|||++.-. +..+..|..+++|+ ++|+|||+|.+-.... ..
T Consensus 109 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i~~~~~~~~~~l~ 187 (617)
T TIGR00204 109 SAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSISENVGALSNHLA 187 (617)
T ss_pred CCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCE-EEEEECCCcccCCCchHHHHHHH
Confidence 3466777899999988874 56789999999999864 55688899999998 7778888876542110 00
Q ss_pred ------hhcccc--cccccCCCCCCCCCCCC-H-H-------------HHHhHCCCCEE-Ee--CChhHHHHHHHHHHhC
Q 040733 551 ------YFEANR--ANSFLGDPLRKSEIFPD-M-L-------------KFAEACGIPAA-RV--TKKKDVRAAIQLMLET 604 (643)
Q Consensus 551 ------~~~~~~--~~~~~g~p~~~~~~~~d-~-~-------------~lA~a~G~~~~-~V--~~~~eL~~al~~al~~ 604 (643)
.|.... ........ ....+ + . .+.++||..+. .| ++.++|.++++++.+.
T Consensus 188 ~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~~ 263 (617)
T TIGR00204 188 QLRSGSLYQSLRDGLKKIFSKL----PPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKNAKKL 263 (617)
T ss_pred HhhccchHHHHHHHHHHHHhcC----cchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHHHhcC
Confidence 000000 00000000 00001 1 1 24788999888 56 5888999999988878
Q ss_pred CCcEEEEEEeCCCCCccc
Q 040733 605 PGPYLLDVMVSYQEHVVP 622 (643)
Q Consensus 605 ~gp~lIeV~v~~~~~~~p 622 (643)
++|++|+|.|.+.....+
T Consensus 264 ~~P~~i~~~T~KGkG~~~ 281 (617)
T TIGR00204 264 KGPVFLHIQTKKGKGYKP 281 (617)
T ss_pred CCCEEEEEEecCCCCCch
Confidence 899999999988765444
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-06 Score=91.56 Aligned_cols=119 Identities=19% Similarity=0.180 Sum_probs=89.4
Q ss_pred cccccchHHHHHHHHhC-----------CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHH
Q 040733 484 GSMGFGLPAAMGAAVAN-----------PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDR 550 (643)
Q Consensus 484 g~mG~glpaAiGaalA~-----------p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~ 550 (643)
|++|.|++.|+|.|++. .+.+|+||+|||.++=. ...+..|..++|+=+|+|+|+|+..+-.
T Consensus 118 GSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG----- 192 (386)
T cd02017 118 VSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDG----- 192 (386)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCC-----
Confidence 78999999999888763 25789999999999864 4558889999997777777777653311
Q ss_pred hhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC-----------------------------------------
Q 040733 551 YFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT----------------------------------------- 589 (643)
Q Consensus 551 ~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~----------------------------------------- 589 (643)
..... ....-|+.+-.++||.+.+.|+
T Consensus 193 ----~t~~v--------~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r 260 (386)
T cd02017 193 ----PVRGN--------GKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVR 260 (386)
T ss_pred ----ccccc--------ccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHH
Confidence 00000 0022489999999999999884
Q ss_pred ------------------------------ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 040733 590 ------------------------------KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 590 ------------------------------~~~eL~~al~~al~-~~gp~lIeV~v~~~~~ 619 (643)
+.++|.+|++++.. .++|++|-+.|-....
T Consensus 261 ~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~~~kPt~Iia~TikG~G 321 (386)
T cd02017 261 EHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEHKGKPTVILAKTIKGYG 321 (386)
T ss_pred HHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhCCCCCeEEEEeCeecCC
Confidence 78889999988875 5789999999866543
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.7e-06 Score=93.06 Aligned_cols=141 Identities=18% Similarity=0.131 Sum_probs=88.7
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCccccC--CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIM--NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
+-|+.|.||++|+|.|+|. .+.+|++++|||.+.= .+..+..|.+++-+ +++|+|+|+.-+....|.....++
T Consensus 175 ~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~n-livIlddN~~~~~~~~q~~g~~~~ 253 (641)
T PLN02234 175 GTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSN-MIVILNDNKQVSLPTANLDGPTQP 253 (641)
T ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCC-EEEEEECCCCCcccccccCCCCCC
Confidence 3488899999999998875 3568999999999975 46678888876755 555556665422110000000000
Q ss_pred cccc--ccCC-CCCCCCCCCCHHHHHhHCCCCEE-Ee--CChhHHHHHHHHHHhC--CCcEEEEEEeCCCCCcccc
Q 040733 556 RANS--FLGD-PLRKSEIFPDMLKFAEACGIPAA-RV--TKKKDVRAAIQLMLET--PGPYLLDVMVSYQEHVVPM 623 (643)
Q Consensus 556 ~~~~--~~g~-p~~~~~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al~~al~~--~gp~lIeV~v~~~~~~~p~ 623 (643)
...- .+.. -.+.....-+.....++||++++ .| ++.++|.++|+++.+. ++|.+|.+.+-....+-++
T Consensus 254 v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~ 329 (641)
T PLN02234 254 VGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYA 329 (641)
T ss_pred cccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchh
Confidence 0000 0000 00000000145788999999999 77 6889999999987654 5899999999887654433
|
|
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-06 Score=85.26 Aligned_cols=174 Identities=20% Similarity=0.267 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcC--CCCCeEEEeCCChhHHHHHHhccccCC-----CeE-------------EecCCCcccccchHHHHH
Q 040733 436 PQYAIQILNELT--DDEETIISTGVGQHQMWAIQFYMYKRA-----RQL-------------LTSSGFGSMGFGLPAAMG 495 (643)
Q Consensus 436 ~~~~~~~L~~~l--~~~d~iv~~d~G~~~~~~~~~~~~~~p-----~~~-------------~~~~~~g~mG~glpaAiG 495 (643)
--.+--+|-.++ |. |-|| -|+|.. .+.-..+.-++. |++ +...+.|--|.++++|+|
T Consensus 46 vVELTiALH~vFd~p~-Dkiv-wDvGHQ-~Y~HKiLTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~G 122 (270)
T PF13292_consen 46 VVELTIALHYVFDSPK-DKIV-WDVGHQ-AYVHKILTGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALG 122 (270)
T ss_dssp CHHHHHHHHHHS-TTT-SEEE-ESSSTT--HHHHHCTTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHH
T ss_pred HHHHHHHHHHHhCCCC-CeEE-Eecccc-cchhhhccCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHH
Confidence 345555555555 44 5555 588854 445454442211 110 111233556778999999
Q ss_pred HHHhC----CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH-------HH----HHHhhcccc--
Q 040733 496 AAVAN----PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV-------EY----EDRYFEANR-- 556 (643)
Q Consensus 496 aalA~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~-------~~----q~~~~~~~~-- 556 (643)
.+.|+ .++.||+|+|||++. |.+..|..+...+-+++||+-+|+ ..+-. .+ ....|..-.
T Consensus 123 ma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~-mSIs~nvGals~~L~~l~~~~~y~~~k~~ 201 (270)
T PF13292_consen 123 MAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNE-MSISPNVGALSKYLSKLRSSPTYNKLKED 201 (270)
T ss_dssp HHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-S-BSSSB--SSHCCC----------------
T ss_pred HHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCC-cccCCCcchHHHHHHhccchhHHHHHHHH
Confidence 99885 578999999999986 567789999999988666555554 43311 11 111111000
Q ss_pred cccccC--CCCC-------CCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhCCCcEEEEEEe
Q 040733 557 ANSFLG--DPLR-------KSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLETPGPYLLDVMV 614 (643)
Q Consensus 557 ~~~~~g--~p~~-------~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~~gp~lIeV~v 614 (643)
....+. .+.. ...... +..+.|.+|..|+-. .+.++|.++|+++.+.+||+||+|.+
T Consensus 202 ~~~~l~~~~~~~~~~~r~~~s~K~~-~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~~gPvllHV~T 270 (270)
T PF13292_consen 202 VKSLLKKIPPIEEFAKRIKESLKGF-SPNLFEELGFDYIGPIDGHDLEELIEVLENAKDIDGPVLLHVIT 270 (270)
T ss_dssp ----------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCSSSEEEEEEE-
T ss_pred HHHHHHhhhHHHHHHHHHhhhhhhh-hHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 000000 0000 000001 125678889998855 68889999999999999999999975
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.6e-06 Score=92.60 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=87.4
Q ss_pred CcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCc---------------
Q 040733 483 FGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYL--------------- 541 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~--------------- 541 (643)
-|..|.+++.|+|.++|. .++.||+++|||++.-. +..|..|..+++|+++||-||+.-
T Consensus 143 ~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg 222 (677)
T PLN02582 143 TGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVG 222 (677)
T ss_pred cchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCcc
Confidence 477888999999988874 46789999999999864 566888999999966666666531
Q ss_pred hhhHHHHH----Hhhc---ccccccccCCCCC------------CCCCCCCHHHHHhHCCCCEE-Ee--CChhHHHHHHH
Q 040733 542 GMNVEYED----RYFE---ANRANSFLGDPLR------------KSEIFPDMLKFAEACGIPAA-RV--TKKKDVRAAIQ 599 (643)
Q Consensus 542 g~~~~~q~----~~~~---~~~~~~~~g~p~~------------~~~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al~ 599 (643)
++-+++.. ..|. +......-..|.. .....+.=..+.++||.+|+ .| ++.++|.++|+
T Consensus 223 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~ 302 (677)
T PLN02582 223 ALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILR 302 (677)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHH
Confidence 11111110 0110 0000000000000 00000000036789999987 44 68899999999
Q ss_pred HHHhC--CCcEEEEEEeCCCCCcccc
Q 040733 600 LMLET--PGPYLLDVMVSYQEHVVPM 623 (643)
Q Consensus 600 ~al~~--~gp~lIeV~v~~~~~~~p~ 623 (643)
++.+. ++|+||+|.+-...-..|+
T Consensus 303 ~~k~~~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 303 EVKSTKTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHHhcCCCCCEEEEEEecCCCCCChh
Confidence 98875 6999999999887655443
|
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=77.06 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=80.8
Q ss_pred cccccchHHHHHHHHh----CCCCeEEEEecCccccC--CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccccc
Q 040733 484 GSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFIM--NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRA 557 (643)
Q Consensus 484 g~mG~glpaAiGaalA----~p~~~Vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~ 557 (643)
|++|.||+.|+|.+++ ..+.+|.+++|||-+.= ++..+.+|++|+|+-+|.+++-|.. |...+-+.
T Consensus 119 GSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~------QldG~t~~-- 190 (243)
T COG3959 119 GSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKL------QLDGETEE-- 190 (243)
T ss_pred CcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCc------ccCCchhh--
Confidence 6677766666665554 55688999999999875 4778999999999866655554432 11100000
Q ss_pred ccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHhC-CCcEEEEEEe
Q 040733 558 NSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLET-PGPYLLDVMV 614 (643)
Q Consensus 558 ~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~~-~gp~lIeV~v 614 (643)
. ...-|+.+--+|||.+..+|+ +.+++.++++++... ++|.+|=+.+
T Consensus 191 ---i-------~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~T 240 (243)
T COG3959 191 ---I-------MPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKT 240 (243)
T ss_pred ---c-------cCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEec
Confidence 0 122378888999999999996 689999999998874 4999987765
|
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.4e-06 Score=89.55 Aligned_cols=117 Identities=24% Similarity=0.289 Sum_probs=92.4
Q ss_pred CcccccchHHHHHHHHhC---------C-----CCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVAN---------P-----GAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~---------p-----~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
-|.+|.|++.|+|.++|. | +..+.+++|||.+|=. .+| ..-|..++|.=+|++.++|...|-.
T Consensus 115 TGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG- 193 (663)
T COG0021 115 TGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDG- 193 (663)
T ss_pred cCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceecc-
Confidence 388999999999999983 2 3689999999999986 344 6778899999899999888765421
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCC---hhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK---KKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~---~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
. +. ....-|..+=.++||.+..++.+ .+++.+||++|.. +++|++|+|++--..
T Consensus 194 --------~---~~-------~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~kTiIG~ 251 (663)
T COG0021 194 --------D---TS-------LSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTIIGK 251 (663)
T ss_pred --------C---cc-------cccchhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEEEeeeec
Confidence 1 10 01235889999999999997754 8899999999997 779999999985443
|
|
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.5e-06 Score=80.19 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=67.5
Q ss_pred cccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHH----HHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccc
Q 040733 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAA----IKAENIPVKILLINNQYLGMNVEYEDRYFEANRAN 558 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~T----a~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~ 558 (643)
|.+|++++.|+|+++.+++..|+|++|||.+.-. +...|. +..+++.-++.|++||+|.|-..
T Consensus 62 G~LG~gLs~A~G~a~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~p------------ 129 (227)
T cd02011 62 GELGYSLSHAYGAVFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNP------------ 129 (227)
T ss_pred cchhhHHHHHHHhhhcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCC------------
Confidence 7899999999999999999999999999995443 223333 23445665566667777776311
Q ss_pred cccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHH
Q 040733 559 SFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQ 599 (643)
Q Consensus 559 ~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~ 599 (643)
+.+ ......++.+.+++||.+.+.|+ +++++.++++
T Consensus 130 t~~-----~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a 167 (227)
T cd02011 130 TIL-----ARISHEELEALFRGYGYEPYFVEGDDPETMHQAMA 167 (227)
T ss_pred ccc-----cccCchhHHHHHHhCCCceEEECCCCHHHHHHHHH
Confidence 000 00124589999999999999995 4445444333
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=93.65 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=82.2
Q ss_pred CcccccchHHHHHHHHhC----CC------CeEEEEecCccc-cC-CHHH-HHHHHHhCCC---eEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVAN----PG------AIVVDIDGDGSF-IM-NLQE-LAAIKAENIP---VKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~----p~------~~Vv~i~GDGsf-~m-~~~e-L~Ta~~~~lp---v~ivV~NN~~~g~~~~ 546 (643)
.+.+|...|-|.|++.|. .+ .-+|++.|||+| .- .+.| |.-+.-.++| +++||.||+ ||+...
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq-~g~tT~ 391 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQ-IGFTTS 391 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEeeC
Confidence 355777788888888774 34 467889999998 34 3666 5556677887 777777765 676421
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe--CChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV--TKKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V--~~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
..+ .....+..++|++||+++++| .+++.+..+.+.|++ .+||+|||+.+.|.
T Consensus 392 ~~~------------------~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~ 450 (924)
T PRK09404 392 PPD------------------DRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRR 450 (924)
T ss_pred HHH------------------hccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecC
Confidence 111 012346788999999999998 467777777766654 57999999999876
|
|
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.8e-05 Score=90.29 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=90.2
Q ss_pred CcccccchHHHHHHHHhCC-----------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHH
Q 040733 483 FGSMGFGLPAAMGAAVANP-----------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYED 549 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p-----------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~ 549 (643)
-|+||.|++.|+|.|++.. +++|+|++|||-++=. +..+..|.+++|+=+|+|+|+|...+-.
T Consensus 188 TGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG---- 263 (889)
T TIGR03186 188 TGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDG---- 263 (889)
T ss_pred CCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC----
Confidence 3899999999999988521 5789999999999864 5568899999998888888888644310
Q ss_pred HhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC----------------------------------------
Q 040733 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT---------------------------------------- 589 (643)
Q Consensus 550 ~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~---------------------------------------- 589 (643)
..... ....-++++..++||.+.++|.
T Consensus 264 -----~t~~~--------~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~ 330 (889)
T TIGR03186 264 -----PVRGN--------GRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYN 330 (889)
T ss_pred -----ccccc--------cccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHH
Confidence 00000 0112478999999999998882
Q ss_pred -------------------------------ChhHHHHHHHHHHhC-CCcEEEEEEeCCCC
Q 040733 590 -------------------------------KKKDVRAAIQLMLET-PGPYLLDVMVSYQE 618 (643)
Q Consensus 590 -------------------------------~~~eL~~al~~al~~-~gp~lIeV~v~~~~ 618 (643)
+++++.+|+++|.+. ++|++|.+++-..-
T Consensus 331 R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~~~~PTvIla~TvkG~ 391 (889)
T TIGR03186 331 RARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRPTVILAKTMKGF 391 (889)
T ss_pred HHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeecC
Confidence 688888999888864 69999999986543
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.3e-05 Score=79.02 Aligned_cols=155 Identities=21% Similarity=0.156 Sum_probs=122.3
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC----CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchh
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS----NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPG 143 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG 143 (643)
..++|.+++++.....|++.+.+||=+...++++.+.+. +..++..-+|.+|..|+.|-+.+..| +...|||||
T Consensus 4 ~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~~aGar--~~TaTSg~G 81 (365)
T COG0674 4 VVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGASYAGAR--AFTATSGQG 81 (365)
T ss_pred EeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHHhhCcc--eEeecCCcc
Confidence 347899999999999999999999999999999988652 48999999999999999999977665 456799999
Q ss_pred hHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhcc-ceeeeE-eCCcCcHHHHHHHHHHHhhcCCCCe
Q 040733 144 VTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM-TKHNYL-VLDVDDIPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 144 ~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~-tk~~~~-v~~~~~i~~~l~~A~~~A~s~~~GP 221 (643)
++-...++.-|.-..+|+++...+++....+.--+ .||.+++... +-|-.. ..++++.-....+||..|..-+ =|
T Consensus 82 l~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~--~dq~D~~~~r~~g~~~~~~~s~qEa~d~t~~Af~iAe~~~-~P 158 (365)
T COG0674 82 LLLMAEALGLAAGTETPLVIVVAQRPLPSTGLPIK--GDQSDLMAARDTGFPILVSASVQEAFDLTLLAFNIAEKVL-TP 158 (365)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeccCcCCCccccc--ccHHHHHHHHccCceEEeeccHHHHHHHHHHHHHHHHHhc-CC
Confidence 99999999999999999999999988654442111 2344443321 222222 2267888889999999998744 78
Q ss_pred EEEEcc
Q 040733 222 VLIDIP 227 (643)
Q Consensus 222 V~i~iP 227 (643)
|.+..-
T Consensus 159 vi~~~D 164 (365)
T COG0674 159 VIVLLD 164 (365)
T ss_pred EEEeec
Confidence 877653
|
|
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.6e-05 Score=94.66 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=104.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHH---hhCC--------CeEEecCChhHHHHHHHHHHHHhCCcEEEE
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSL---TRSN--------IRSILPRHEQGGIFAAEGYARSSGTPGVCL 137 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al---~~~~--------i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~ 137 (643)
.|+|.++++....+ |++.+|+||=+++.++.+.+ .+.+ ..++..-+|.+|+.|+.|.+.+ |.. +..
T Consensus 3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~~a-Gar-a~T 79 (1165)
T TIGR02176 3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGALQT-GAL-TTT 79 (1165)
T ss_pred eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHhhc-CCC-EEE
Confidence 47999999999988 99999999988888887777 3332 2799999999999999997754 433 456
Q ss_pred EccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhh-ccceeeeE-eCCcCcHHHHHHHHHHHhh
Q 040733 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR-YMTKHNYL-VLDVDDIPRIIKEAFFIAT 215 (643)
Q Consensus 138 ~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~-~~tk~~~~-v~~~~~i~~~l~~A~~~A~ 215 (643)
.|+|+|++-+...|..+...++|+|+...++.....+-.-+. |+.++++ --+-|... ..++++.......||.+|.
T Consensus 80 ~TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~i~~--dh~Dv~~~R~~G~ivl~s~svQEa~D~al~A~~lAe 157 (1165)
T TIGR02176 80 FTASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALSIFG--DHQDVMAARQTGFAMLASSSVQEVMDLALVAHLATI 157 (1165)
T ss_pred ecChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCccCC--CchHHHHhhcCCeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 799999999999998877779999999988754422211111 2222221 11223222 2455666667777777776
Q ss_pred cCCCCeEEEE
Q 040733 216 SGRPGPVLID 225 (643)
Q Consensus 216 s~~~GPV~i~ 225 (643)
..+ -||.+.
T Consensus 158 ~~~-~Pvi~~ 166 (1165)
T TIGR02176 158 EAR-VPFMHF 166 (1165)
T ss_pred hcC-CCEEEE
Confidence 544 365543
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.4e-05 Score=85.54 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=85.7
Q ss_pred cccccchHHHHHHHHh----CCCCeEEEEecCcccc--CCHHHHHHHH-HhCCCeEEEEEeCCCchh-------hHHHHH
Q 040733 484 GSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFI--MNLQELAAIK-AENIPVKILLINNQYLGM-------NVEYED 549 (643)
Q Consensus 484 g~mG~glpaAiGaalA----~p~~~Vv~i~GDGsf~--m~~~eL~Ta~-~~~lpv~ivV~NN~~~g~-------~~~~q~ 549 (643)
|--+.+|++|+|.+.| ..++.||+|+|||++- |.+..|..+. ..+-+ .|||+|+|...| -+++.+
T Consensus 115 GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~-~iVILNDNeMSIs~nvGal~~~L~~ 193 (627)
T COG1154 115 GHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSN-LIVILNDNEMSISPNVGALSKHLAR 193 (627)
T ss_pred CchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCC-EEEEEeCCCcccCCCccHHHHHHHH
Confidence 4455688999998876 3568899999999874 7777888887 33345 555666665533 233222
Q ss_pred Hhhcc-------cc--cccccCCCCCC------CC--CCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhCCCcEE
Q 040733 550 RYFEA-------NR--ANSFLGDPLRK------SE--IFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLETPGPYL 609 (643)
Q Consensus 550 ~~~~~-------~~--~~~~~g~p~~~------~~--~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~~gp~l 609 (643)
..... .. .-...|.+... +. .-..-..+.|.||.+|+-. ++.++|..+|+++.+.++|+|
T Consensus 194 l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~~gPvl 273 (627)
T COG1154 194 LRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKDLKGPVL 273 (627)
T ss_pred HhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhcCCCCEE
Confidence 11110 00 00001110000 00 0011125888999998854 678999999999999999999
Q ss_pred EEEEeCCCCCccc
Q 040733 610 LDVMVSYQEHVVP 622 (643)
Q Consensus 610 IeV~v~~~~~~~p 622 (643)
|+|++....-..|
T Consensus 274 lHv~T~KGKGY~p 286 (627)
T COG1154 274 LHVVTKKGKGYKP 286 (627)
T ss_pred EEEEecCCCCCCh
Confidence 9999987754443
|
|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.1e-05 Score=89.48 Aligned_cols=118 Identities=22% Similarity=0.259 Sum_probs=83.7
Q ss_pred CCcccccchHHHHHHHHhC----C------CCeEEEEecCccc-cC-CHHH-HHHHHHhCCCe--EEEEEeCCCchhhHH
Q 040733 482 GFGSMGFGLPAAMGAAVAN----P------GAIVVDIDGDGSF-IM-NLQE-LAAIKAENIPV--KILLINNQYLGMNVE 546 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p------~~~Vv~i~GDGsf-~m-~~~e-L~Ta~~~~lpv--~ivV~NN~~~g~~~~ 546 (643)
+-+.+|...|-+.|.+.|. . +.-+|++.|||+| .. .+.| |.-+.-.++|+ +|+|+.||+||+...
T Consensus 313 npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~ 392 (929)
T TIGR00239 313 NPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTN 392 (929)
T ss_pred CCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEc
Confidence 3466888888899988874 2 3467899999998 44 3666 56677889998 455555556777531
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe--CChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV--TKKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V--~~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
..+ ........+.|++||++++.| .+++.+..+.+.|++ .+||+|||+.+.|.
T Consensus 393 ~~~------------------~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~ 451 (929)
T TIGR00239 393 PLD------------------ARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRR 451 (929)
T ss_pred HHH------------------hcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccC
Confidence 110 012346778999999999999 466777777776654 57999999999765
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.1e-05 Score=89.33 Aligned_cols=182 Identities=15% Similarity=0.166 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHhcC--CCCCeEEEeCCChhHHHHHHhccccCC----CeE-------------EecCCCcccccchHHH
Q 040733 433 EIPPQYAIQILNELT--DDEETIISTGVGQHQMWAIQFYMYKRA----RQL-------------LTSSGFGSMGFGLPAA 493 (643)
Q Consensus 433 ~i~~~~~~~~L~~~l--~~~d~iv~~d~G~~~~~~~~~~~~~~p----~~~-------------~~~~~~g~mG~glpaA 493 (643)
.+.--.+--+|-.++ |. |-|| -|+|.. .+.-..+.-++. |++ +...+-|--+.++++|
T Consensus 122 nLGvVELTvALH~VFd~p~-Dkii-wDvgHQ-~Y~HKiLTGR~~~f~~Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaa 198 (701)
T PLN02225 122 SFAAIELTLALHYVFRAPV-DNIL-WDAVEQ-TYAHKVLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAG 198 (701)
T ss_pred CccHHHHHHHHHHHhCCCC-Ccee-eccccc-cchhhHhcCChhhcCccccCCcCCCCCCCCCCCCCCCCChHHHHHHHH
Confidence 455556666666665 44 5555 588843 333333332211 221 1111224445579999
Q ss_pred HHHHHhC----CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHH---------------HHHH--
Q 040733 494 MGAAVAN----PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVE---------------YEDR-- 550 (643)
Q Consensus 494 iGaalA~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~---------------~q~~-- 550 (643)
+|.+.|+ .++.||+|+|||++. |.+..|..+...+-+ +|||+|+|.+.+-.. +...
T Consensus 199 lG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~-livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~ 277 (701)
T PLN02225 199 LGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQS 277 (701)
T ss_pred HHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCC-EEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhc
Confidence 9998884 567899999999985 677889999988877 556667766655433 1000
Q ss_pred --hhcc---cc--cccccCCCCC----------CCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHhCC--CcE
Q 040733 551 --YFEA---NR--ANSFLGDPLR----------KSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLETP--GPY 608 (643)
Q Consensus 551 --~~~~---~~--~~~~~g~p~~----------~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~~~--gp~ 608 (643)
.|.. .. .-...+.+.. .....+.=..+.|.+|..|+-. ++.++|.++|+++.+.+ +|+
T Consensus 278 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~Pv 357 (701)
T PLN02225 278 SKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPV 357 (701)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCE
Confidence 0000 00 0000000000 0000010014778899998854 67889999999988765 999
Q ss_pred EEEEEeCCCC
Q 040733 609 LLDVMVSYQE 618 (643)
Q Consensus 609 lIeV~v~~~~ 618 (643)
||+|.+....
T Consensus 358 lvHv~T~KGk 367 (701)
T PLN02225 358 LVHVITEENR 367 (701)
T ss_pred EEEEEecCCC
Confidence 9999998775
|
|
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.1e-05 Score=81.49 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=87.8
Q ss_pred CCcccccchHHHHHHHHhCC-----CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 482 GFGSMGFGLPAAMGAAVANP-----GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p-----~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
+-|.+|.||+.|+|.|++.. +.+|+|++|||..+=. ...++.|..++++-+|++++|+..++- .
T Consensus 116 ~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~---------g 186 (632)
T KOG0523|consen 116 ATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISID---------G 186 (632)
T ss_pred ccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCC---------C
Confidence 34889999999999988742 5689999999999864 444889999999999999999865531 0
Q ss_pred cccccccCCCCCCCCCCCCHHH-HHhHCCCCEEEe--CChhHHHHHHHHHH-hCCCcEEEEEEeCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLK-FAEACGIPAARV--TKKKDVRAAIQLML-ETPGPYLLDVMVSY 616 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~-lA~a~G~~~~~V--~~~~eL~~al~~al-~~~gp~lIeV~v~~ 616 (643)
.+. .....|..+ =.++||++...| ++.+++.+++.++. ..++|.+|-+.+-.
T Consensus 187 ---~t~-------~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt~i~~~t~~ 242 (632)
T KOG0523|consen 187 ---ATS-------LGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPTAIKATTFI 242 (632)
T ss_pred ---CCc-------ccccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhccCCceeeeeeeee
Confidence 011 123456666 789999999988 46788888888876 36788888777643
|
|
| >KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.2e-05 Score=77.34 Aligned_cols=116 Identities=26% Similarity=0.359 Sum_probs=79.1
Q ss_pred CCCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 481 SGFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
+|.|..|..+|.+.|+++|. .+.-++++-|||+.... +..+..|.-.+||+++|+=|| +|||--.....
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN-~yGMGTs~~Ra---- 236 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENN-HYGMGTSAERA---- 236 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccC-CCccCcchhhh----
Confidence 66788888999999998884 35678899999999875 455777888899976665555 68874222111
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH--HHHHHHHH----HhCCCcEEEEEEeCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD--VRAAIQLM----LETPGPYLLDVMVSYQ 617 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e--L~~al~~a----l~~~gp~lIeV~v~~~ 617 (643)
...+||=+=. .| +++.+|+--+- ++++.+.| ++.+||.|+|..+.+-
T Consensus 237 --------------sa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy 289 (394)
T KOG0225|consen 237 --------------SASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRY 289 (394)
T ss_pred --------------hcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeee
Confidence 2234444433 22 67778865543 35555544 4458999999998764
|
|
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.6e-05 Score=85.00 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=88.8
Q ss_pred cccccchHHHHHHHHhC-----------CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHH
Q 040733 484 GSMGFGLPAAMGAAVAN-----------PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDR 550 (643)
Q Consensus 484 g~mG~glpaAiGaalA~-----------p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~ 550 (643)
|+||.|++.|+|.|++. .+++|+|++|||-++=. ...+..|.+++|+=+|+|+|+|...+-.
T Consensus 189 GSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG----- 263 (885)
T TIGR00759 189 VSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDG----- 263 (885)
T ss_pred CCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCC-----
Confidence 89999999999988753 35789999999999863 5568889999998888888888643210
Q ss_pred hhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC-----------------------------------------
Q 040733 551 YFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT----------------------------------------- 589 (643)
Q Consensus 551 ~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~----------------------------------------- 589 (643)
..... ....-++++..++||.+.++|.
T Consensus 264 ----~v~~~--------~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R 331 (885)
T TIGR00759 264 ----PVRGN--------GKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVR 331 (885)
T ss_pred ----ccccc--------cccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHH
Confidence 00000 0012478888899999888872
Q ss_pred ------------------------------ChhHHHHHHHHHHhC-CCcEEEEEEeCCCC
Q 040733 590 ------------------------------KKKDVRAAIQLMLET-PGPYLLDVMVSYQE 618 (643)
Q Consensus 590 ------------------------------~~~eL~~al~~al~~-~gp~lIeV~v~~~~ 618 (643)
+++++.+|++++.+. ++|++|-+.+-..-
T Consensus 332 ~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~~grPTvIlA~TvKG~ 391 (885)
T TIGR00759 332 EHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGQPTVILAKTIKGY 391 (885)
T ss_pred HHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhCCCCCEEEEEeeeecC
Confidence 678888899888764 58999999987654
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.1e-05 Score=67.00 Aligned_cols=75 Identities=25% Similarity=0.313 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCC-----------------CCCCcccccC
Q 040733 262 RQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPC-----------------TDELCLRMVG 322 (643)
Q Consensus 262 ~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~-----------------~hpl~lG~~g 322 (643)
+-++.++++||||++++|..+. +..+.+.+|+|+.++|+++|....+.+-+ .+|.|.|.-|
T Consensus 26 ~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg 105 (170)
T COG1880 26 EVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDG 105 (170)
T ss_pred HHHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCC
Confidence 3467899999999999999876 44567889999999999999765543322 1233332211
Q ss_pred CCCcHHHHHhhhcCCEEEEecCcc
Q 040733 323 MFGTVYANYAVNECDLLLAAGVRF 346 (643)
Q Consensus 323 ~~~~~~~~~~l~~aDlvL~vG~~~ 346 (643)
+ .+.|+||.+|+..
T Consensus 106 ---~-------g~yDlviflG~~~ 119 (170)
T COG1880 106 ---N-------GNYDLVIFLGSIY 119 (170)
T ss_pred ---C-------CCcceEEEEeccH
Confidence 1 2689999999985
|
|
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00018 Score=83.84 Aligned_cols=119 Identities=19% Similarity=0.174 Sum_probs=91.4
Q ss_pred cccccchHHHHHHHHhCC-----------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHH
Q 040733 484 GSMGFGLPAAMGAAVANP-----------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDR 550 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p-----------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~ 550 (643)
|+||.|++.|+|.++... +++|+|++|||-+.=. +..+..|.+++|+=+|+|+|.|...+-
T Consensus 195 gS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lD------ 268 (891)
T PRK09405 195 VSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLD------ 268 (891)
T ss_pred cccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccC------
Confidence 899999999999998765 6889999999999863 566899999999888888888763321
Q ss_pred hhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC-----------------------------------------
Q 040733 551 YFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT----------------------------------------- 589 (643)
Q Consensus 551 ~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~----------------------------------------- 589 (643)
...... ....-++++..++||.+.+.|.
T Consensus 269 ---G~v~~~--------~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R 337 (891)
T PRK09405 269 ---GPVRGN--------GKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVR 337 (891)
T ss_pred ---Cccccc--------cccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHH
Confidence 000000 0112488999999999999882
Q ss_pred ------------------------------ChhHHHHHHHHHHhC-CCcEEEEEEeCCCCC
Q 040733 590 ------------------------------KKKDVRAAIQLMLET-PGPYLLDVMVSYQEH 619 (643)
Q Consensus 590 ------------------------------~~~eL~~al~~al~~-~gp~lIeV~v~~~~~ 619 (643)
+.+++.+|++++.+. ++|++|-+.+-..-.
T Consensus 338 ~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~~~~PtvIia~TvkG~G 398 (891)
T PRK09405 338 EHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQPTVILAKTIKGYG 398 (891)
T ss_pred HHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhCCCCCEEEEEeceecCC
Confidence 688888999888864 889999999866543
|
|
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00019 Score=83.92 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=90.6
Q ss_pred CcccccchHHHHHHHHhCC-----------CCeEEEEecCccccC--CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHH
Q 040733 483 FGSMGFGLPAAMGAAVANP-----------GAIVVDIDGDGSFIM--NLQELAAIKAENIPVKILLINNQYLGMNVEYED 549 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p-----------~~~Vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~ 549 (643)
-|+||.|++.|+|.|+... +++|+|++|||-+.= +...+..|.+++|+=+|+|+|+|...+-.
T Consensus 202 TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG---- 277 (896)
T PRK13012 202 TGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDG---- 277 (896)
T ss_pred CCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccC----
Confidence 3899999999999988743 378999999999986 35668889999998888888887643210
Q ss_pred HhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe--------------------------C--------------
Q 040733 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV--------------------------T-------------- 589 (643)
Q Consensus 550 ~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V--------------------------~-------------- 589 (643)
..... ....-++++..++||.+.++| +
T Consensus 278 -----~v~~~--------~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~ 344 (896)
T PRK13012 278 -----PVRGN--------GRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYN 344 (896)
T ss_pred -----ccccc--------cccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHH
Confidence 00000 011248899999999999988 3
Q ss_pred -------------------------------ChhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 590 -------------------------------KKKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 590 -------------------------------~~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
+.+++.+|++++.+ .++|++|-+.+-..-
T Consensus 345 r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~~~~PtvIla~TvkG~ 405 (896)
T PRK13012 345 REHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQPTVILAKTKKGY 405 (896)
T ss_pred HHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeeecC
Confidence 78888999988875 568999999986654
|
|
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=81.69 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=77.4
Q ss_pred cccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHH----HhCCCeEEEEEeCCCchhhHHHHHHhhcccccc
Q 040733 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIK----AENIPVKILLINNQYLGMNVEYEDRYFEANRAN 558 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~----~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~ 558 (643)
|.+|+|++.|.|+++..++..|+|++|||.+.-. +...|-+. .+++.-++.|+++|+|.|-. .
T Consensus 142 G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is~----------p-- 209 (785)
T PRK05261 142 GELGYSLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIAN----------P-- 209 (785)
T ss_pred CchhhHHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCCC----------C--
Confidence 7899999999999999999999999999994432 12223322 23454455555566666531 0
Q ss_pred cccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHH----HHHHHh-----------C---CCcE--EEEEEeCC
Q 040733 559 SFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAA----IQLMLE-----------T---PGPY--LLDVMVSY 616 (643)
Q Consensus 559 ~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~a----l~~al~-----------~---~gp~--lIeV~v~~ 616 (643)
+... ....-++.+..++||.+.+.|+ +++++.++ ++++++ . .+|. +|.+.+..
T Consensus 210 t~~~-----~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~k 284 (785)
T PRK05261 210 TILA-----RISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPK 284 (785)
T ss_pred cccc-----ccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCc
Confidence 0000 0122489999999999999986 55555544 222222 2 4788 99999876
Q ss_pred CC
Q 040733 617 QE 618 (643)
Q Consensus 617 ~~ 618 (643)
.-
T Consensus 285 G~ 286 (785)
T PRK05261 285 GW 286 (785)
T ss_pred cC
Confidence 53
|
|
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00084 Score=81.85 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=83.0
Q ss_pred CeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC
Q 040733 503 AIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC 581 (643)
Q Consensus 503 ~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~ 581 (643)
+.||++.||| ++-..++.|..+.+.|.++++||+||..|++...+.....+... .+.+ .|.......-|...+|.++
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~-~t~~-~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGA-IAKF-AAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcC-cccc-CCCCCCCCCcCHHHHHHHC
Confidence 4799999999 56778999999999999999999999999986422111110000 0000 1222223456999999999
Q ss_pred CCCEE-Ee---CChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 582 GIPAA-RV---TKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 582 G~~~~-~V---~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
|..|+ ++ .++.++.+++++|.+.+||.+|++..+-
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~~G~s~i~~~~pC 1068 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAYDGPSIVIAYSPC 1068 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 99876 33 2789999999999999999999999763
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00036 Score=69.98 Aligned_cols=114 Identities=22% Similarity=0.272 Sum_probs=75.3
Q ss_pred ccccchHHHHHHHHhC-----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccccc
Q 040733 485 SMGFGLPAAMGAAVAN-----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRA 557 (643)
Q Consensus 485 ~mG~glpaAiGaalA~-----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~ 557 (643)
.+-..||-|+|++.+- .++-+|++.|||+.--. =..|.-|+-...|+++|+=|| ||.|--...+ .|..+-
T Consensus 194 platqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNN-G~AISTptse-Qyr~DG- 270 (432)
T KOG1182|consen 194 PLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNN-GWAISTPTSE-QYRGDG- 270 (432)
T ss_pred hhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCC-CeeeccccHH-HhcCCc-
Confidence 4455789999988763 35889999999988643 234667788899987776665 5776432211 121111
Q ss_pred ccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH------HHHHHHHHhCCCcEEEEEEeCCC
Q 040733 558 NSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV------RAAIQLMLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 558 ~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL------~~al~~al~~~gp~lIeV~v~~~ 617 (643)
.+.=..+||+..+||+-.+-| ++|-+.++..++|+|||.++.+-
T Consensus 271 ----------------Ia~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRv 320 (432)
T KOG1182|consen 271 ----------------IAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRV 320 (432)
T ss_pred ----------------eEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhh
Confidence 112234799999999877654 34444456688999999987653
|
|
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.1 Score=48.89 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=79.9
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHH-HhhhCCCCEEEEeCCCcccc-cCCCCCCccCHHH
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLM-DAYSDSIPILAITGQVSQKL-LGTDAFQEIPVVE 185 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~-~A~~~~vPvlvItg~~~~~~-~g~~~~Q~~d~~~ 185 (643)
|++ ....|++.+.+|.|.|.. |...++. +...=..-++..|. ++...+.||+++........ .+-..+|..++..
T Consensus 40 r~i~~gIaE~~~vg~A~GlA~~-G~~pi~~-~~~~f~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a 117 (156)
T cd07033 40 RFIDVGIAEQNMVGIAAGLALH-GLKPFVS-TFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIA 117 (156)
T ss_pred CeEEeChhHHHHHHHHHHHHHC-CCeEEEE-ECHHHHHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHH
Confidence 444 678999999999999965 4433433 44445555667777 88889999999987443332 2223467788889
Q ss_pred Hhhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 186 VTRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 186 ~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+++.+-... +...+++++..+++.|++. ++||+|.+|.
T Consensus 118 ~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~-----~~P~~irl~~ 156 (156)
T cd07033 118 LLRAIPNMTVLRPADANETAAALEAALEY-----DGPVYIRLPR 156 (156)
T ss_pred HhcCCCCCEEEecCCHHHHHHHHHHHHhC-----CCCEEEEeeC
Confidence 999886543 4466777888888888764 3699998873
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.012 Score=56.09 Aligned_cols=119 Identities=22% Similarity=0.152 Sum_probs=85.0
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
..+++....- +.+..+|-|.+.+. +|+.++++-=| ++...++.|.++...++|+++|.-.-.....-
T Consensus 39 ~i~~i~~~~E---~~A~~~A~g~ar~~-g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~-------- 106 (172)
T PF02776_consen 39 GIRFIPVRHE---QGAAFMADGYARAT-GRPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEG-------- 106 (172)
T ss_dssp TSEEEE-SSH---HHHHHHHHHHHHHH-SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTT--------
T ss_pred ceeeecccCc---chhHHHHHHHHHhh-ccceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhc--------
Confidence 4566654432 22566778887776 56766666554 66777999999999999999988776653321
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
... .....|...+++.+....+++++++++.+++++|+. .+||+.|+++.|-
T Consensus 107 -----~~~-------~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 107 -----RGA-------FQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDV 163 (172)
T ss_dssp -----TTS-------TTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHH
T ss_pred -----ccc-------cccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhH
Confidence 000 122568999999999999999999998888877653 6899999999764
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.15 Score=48.29 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=81.1
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEE-EecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVD-IDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~-i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
.-+++....-.+ +.-+|-|.+.+. +++.++ ++...++...+..+.+|...++|+++|.-+-.....
T Consensus 38 ~i~~v~~rhE~~---A~~mA~gyar~t-g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~--------- 104 (164)
T cd07039 38 KIEFIQVRHEEA---AAFAASAEAKLT-GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDEL--------- 104 (164)
T ss_pred CCeEEEeCCHHH---HHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCccccc---------
Confidence 345555443322 445667777766 355554 444556666789999999999999998865442110
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEEeCC
Q 040733 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVMVSY 616 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~v~~ 616 (643)
+ .. .....|...+++.+-....++++++++.+++++|+. ..||+.||++.|-
T Consensus 105 ~----~~--------~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~dv 160 (164)
T cd07039 105 G----TD--------YFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGDV 160 (164)
T ss_pred C----CC--------CCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChHH
Confidence 0 00 124468899999999999999999888877777663 5699999998763
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.019 Score=59.22 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCccccc--CCCCcHHHHHhh
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMV--GMFGTVYANYAV 333 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~--g~~~~~~~~~~l 333 (643)
-+++++++++.|.+||||+++-+.... ++.+.-.+++|++|+-+=.+-. +- .-|..+|.. |.-+ ....+.-
T Consensus 65 ~deAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~gaviD~~as----vc-hGp~~~alqe~g~p~-~TlgevK 138 (429)
T COG1029 65 YDEAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGAVIDSNAS----VC-HGPSVLALQEAGKPT-ATLGEVK 138 (429)
T ss_pred HHHHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCcEecCCCc----cc-cchHHHHHHhcCCcc-cchhhhc
Confidence 578999999999999999999777555 6788889999999986522110 00 012223221 2111 1112344
Q ss_pred hcCCEEEEecCccCcccc---Cccccc-----c----CCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHh
Q 040733 334 NECDLLLAAGVRFNERMT---SKLEDF-----A----TRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILE 399 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t---~~~~~~-----~----~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 399 (643)
.++|+|+--|+..-+-.. .++..| . .+.++|.||+......+--..++.|. +|. +++.+|...+.
T Consensus 139 NraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sDy-elisAl~~~l~ 217 (429)
T COG1029 139 NRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSDY-ELISALRAALH 217 (429)
T ss_pred ccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCcH-HHHHHHHHHhc
Confidence 689999999987533211 122222 1 23468888877665444322222222 454 45667776766
Q ss_pred hcC
Q 040733 400 SKG 402 (643)
Q Consensus 400 ~~~ 402 (643)
.+.
T Consensus 218 G~~ 220 (429)
T COG1029 218 GKE 220 (429)
T ss_pred CCC
Confidence 543
|
|
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.031 Score=52.15 Aligned_cols=104 Identities=22% Similarity=0.208 Sum_probs=76.4
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKS 568 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~ 568 (643)
+..+|.|.+.+....-++.++...+++..++.|.++...++|+++|..+-.....- . . .
T Consensus 46 A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~~~~~-----------~-~---------~ 104 (155)
T cd07035 46 AVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEG-----------R-G---------A 104 (155)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCcccccc-----------C-C---------c
Confidence 67788888887633345555558888888999999999999999988765532210 0 0 0
Q ss_pred CCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----C-CCcEEEEEE
Q 040733 569 EIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----T-PGPYLLDVM 613 (643)
Q Consensus 569 ~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~-~gp~lIeV~ 613 (643)
....|...+.+.+-....++++++++.+.+++++. . .||+.|++.
T Consensus 105 ~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 105 FQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred ccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 13467888888887788999999999888888764 2 589999874
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer [] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.014 Score=54.79 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCchhh--HHHHHHHHHHhCCceeecC-CCCCCCCCCCCCcccccCCCCcHHHHHhh---
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTT-MGLGLFPCTDELCLRMVGMFGTVYANYAV--- 333 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~~~--~~~l~~lae~lg~PV~tt~-~gkg~~~~~hpl~lG~~g~~~~~~~~~~l--- 333 (643)
.++.++++|++||||++++|..+... .+.........++|++.|. ..++.- +..|-| + .......+
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~~-d~~~ky-~------~~~~~~~l~~p 94 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGMP-DYRPKY-P------KIEPENELNDP 94 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCHC-SSGCCE--------HHHHHHHCCST
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeeccccccccc-cccccc-c------cccHHHhcCCC
Confidence 34788999999999999999988733 3445566777899999886 555542 212222 1 11111111
Q ss_pred --------hcCCEEEEecCccC--ccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 334 --------NECDLLLAAGVRFN--ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 334 --------~~aDlvL~vG~~~~--~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
.+.|++|.+|...- ++.-..+..|.+..+++-++.... -.+++++
T Consensus 95 ~w~g~~g~g~~Dl~iFiGv~~yya~~~Ls~LK~ftp~~~t~~~~~~yh-----pnA~~Sf 149 (167)
T PF02552_consen 95 HWNGTDGHGNYDLVIFIGVHCYYANQVLSILKHFTPCLKTISCDRYYH-----PNADMSF 149 (167)
T ss_dssp T--TTTSS---SEEEEES--HHHHHHHHHHHHHH-TT-EEEE-SSS-------TTSSEEE
T ss_pred CCCccccCCcccEEEEecchHHHHHHHHHHHhccCCceEEEEeccccC-----CCcceec
Confidence 27899999998752 222222344666667777764332 2455665
|
The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B. |
| >PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.91 Score=48.54 Aligned_cols=156 Identities=18% Similarity=0.073 Sum_probs=87.6
Q ss_pred CCcHHHHHHHHHHHCCC--CEEEEccCCCc-----HHHHHHHhh-CC-CeEE-ecCChhHHHHHHHHHHHHhCCcEEEEE
Q 040733 69 PRKGADIIVEALERQGV--TTVFAYPGGAS-----IEIHQSLTR-SN-IRSI-LPRHEQGGIFAAEGYARSSGTPGVCLV 138 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV--~~vFg~PG~~~-----~~l~~al~~-~~-i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~ 138 (643)
+++..+++.++|.+..- +.++.+.++-. ...++.|.+ .+ =|++ ...-|++++.+|.|+|....+|-|++
T Consensus 34 ~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~- 112 (355)
T PTZ00182 34 KMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEF- 112 (355)
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEe-
Confidence 44566666666665543 34555544422 333455543 32 3445 66899999999999999765655553
Q ss_pred ccchhhHHHHHHHHH--hhh-------CCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeee-EeCCcCcHHHHHH
Q 040733 139 SSGPGVTNIMTGLMD--AYS-------DSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIK 208 (643)
Q Consensus 139 t~GpG~~N~~~gl~~--A~~-------~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~ 208 (643)
...+=+..++--|.+ |+. -++||+++...-.....|....|.. ..+++.+..+.. ...++.++..+++
T Consensus 113 ~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~--ea~lr~iPn~~V~~Psd~~e~~~~l~ 190 (355)
T PTZ00182 113 MFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSF--EAYFAHVPGLKVVAPSDPEDAKGLLK 190 (355)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchH--HHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 222222333333221 333 3788887743222212222122544 388888875444 3456677777777
Q ss_pred HHHHHhhcCCCCeEEEEcccchhh
Q 040733 209 EAFFIATSGRPGPVLIDIPVDVQL 232 (643)
Q Consensus 209 ~A~~~A~s~~~GPV~i~iP~Dv~~ 232 (643)
.|++ . +|||||-.|..+..
T Consensus 191 ~a~~----~-~~P~~i~~p~~l~r 209 (355)
T PTZ00182 191 AAIR----D-PNPVVFFEPKLLYR 209 (355)
T ss_pred HHHh----C-CCcEEEEeehHHhC
Confidence 6654 2 49999988876543
|
|
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.32 Score=47.38 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=93.5
Q ss_pred HHHHHHHCCC-CEEEEc-cCCCcHHHHHHHhhCC-CeEEecCCh---hHHHHHHHHHHHHh-CCcEEEEEccchhhHHHH
Q 040733 76 IVEALERQGV-TTVFAY-PGGASIEIHQSLTRSN-IRSILPRHE---QGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 76 lv~~L~~~GV-~~vFg~-PG~~~~~l~~al~~~~-i~~i~~~hE---~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~ 148 (643)
+++.|.+.-- +.++.. -|.+.......+.-.. -+++.+..= ..+.-+|.|.+.+. +|+.||++-=| ++.-.+
T Consensus 9 ~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG-~f~m~~ 87 (196)
T cd02013 9 VLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDG-AWGMSM 87 (196)
T ss_pred HHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcch-HHhccH
Confidence 4444444322 333333 3443333333333222 555544321 23556888888775 56777665444 344457
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccc---------cCC----CCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhh
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKL---------LGT----DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIAT 215 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~---------~g~----~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~ 215 (643)
..|..|...++|+++|.-+..... .+. ..+...|...+.+.+--..+++.+++++...+++|+....
T Consensus 88 ~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~ 167 (196)
T cd02013 88 MEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMA 167 (196)
T ss_pred HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 899999999999999984433210 010 0233568888888887788899999999999998886443
Q ss_pred cCCCCeEEEEcccc
Q 040733 216 SGRPGPVLIDIPVD 229 (643)
Q Consensus 216 s~~~GPV~i~iP~D 229 (643)
+ .||+.|++..|
T Consensus 168 ~--~~p~liev~v~ 179 (196)
T cd02013 168 E--GKTTVIEIVCD 179 (196)
T ss_pred C--CCeEEEEEEeC
Confidence 3 58999999876
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.11 Score=49.71 Aligned_cols=116 Identities=17% Similarity=0.258 Sum_probs=76.7
Q ss_pred CeEEecCChh---HHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-----cC----C
Q 040733 108 IRSILPRHEQ---GGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-----LG----T 175 (643)
Q Consensus 108 i~~i~~~hE~---~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-----~g----~ 175 (643)
-+++..+.=. .+.-+|.|.+.+.+|+.||++-=| ++.-.+..|..|...++|+++|.-+..... +. .
T Consensus 42 ~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDG-sf~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~ 120 (175)
T cd02009 42 VRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDL-SFLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFED 120 (175)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehH-HHHHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccc
Confidence 5566554422 456788888877778877764333 333337899999999999999886443210 00 0
Q ss_pred --C-CC---CccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 176 --D-AF---QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 176 --~-~~---Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+ .+ ...|...+.+.+--..+++.+++++...+++|++ ..||+.|++..|
T Consensus 121 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIev~v~ 175 (175)
T cd02009 121 EFERLFGTPQGLDFEHLAKAYGLEYRRVSSLDELEQALESALA-----QDGPHVIEVKTD 175 (175)
T ss_pred hhhhhhcCCCCCCHHHHHHHcCCCeeeCCCHHHHHHHHHHHHh-----CCCCEEEEEeCC
Confidence 0 01 2357777877775567788888888888888764 258999998754
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.15 Score=48.87 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=75.5
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhC-CcEEEEEccchhhH----HHHHHHH-HhhhCCCCEEEEeCCCcccccCCCCCCcc
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSG-TPGVCLVSSGPGVT----NIMTGLM-DAYSDSIPILAITGQVSQKLLGTDAFQEI 181 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg-~~gv~~~t~GpG~~----N~~~gl~-~A~~~~vPvlvItg~~~~~~~g~~~~Q~~ 181 (643)
|++ ....|++.+.+|.|+|...+ ++.++. +.++=+. =....+. .....+.|+.+++...-....+-..+|..
T Consensus 49 r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~-~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~ 127 (178)
T PF02779_consen 49 RFINTGIAEQNMVGMAAGLALAGGLRPPVES-TFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSI 127 (178)
T ss_dssp TEEE--S-HHHHHHHHHHHHHHSSSEEEEEE-EEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSS
T ss_pred eEEecCcchhhccceeeeeeecccccceeEe-eccccccccchhhhhhhhhhhhcccceecceeecCccccccccccccc
Confidence 455 57899999999999998775 666654 4444322 2333444 66677888774443222122223457888
Q ss_pred CHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccch
Q 040733 182 PVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV 230 (643)
Q Consensus 182 d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv 230 (643)
+...+++.+..+... ..++.++..+++.|++. ..+|||||..|...
T Consensus 128 ~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~---~~~~P~~ir~~r~~ 174 (178)
T PF02779_consen 128 EDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR---ESDGPVYIREPRGL 174 (178)
T ss_dssp SHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS---SSSSEEEEEEESSE
T ss_pred ccccccccccccccccCCCHHHHHHHHHHHHHh---CCCCeEEEEeeHHh
Confidence 999999999875554 56777888888777763 22599999998764
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B .... |
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.11 Score=49.55 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--------------CCCCccC
Q 040733 118 GGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--------------DAFQEIP 182 (643)
Q Consensus 118 ~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--------------~~~Q~~d 182 (643)
.+.-+|.|.+.+. .++.+|++-=| ++.-....+..|...++|+++|.-+......-+ ..+...|
T Consensus 52 ~~lp~AiGa~la~~~~~vv~i~GDG-~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d 130 (172)
T cd02004 52 VGLGYAIAAALARPDKRVVLVEGDG-AFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTR 130 (172)
T ss_pred chHHHHHHHHHhCCCCeEEEEEcch-hhcCCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCC
Confidence 3556778887776 46666664433 333347889999999999888875443211100 0123457
Q ss_pred HHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 183 ~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
...+.+.+--...++.+++++.+.+++|+. . +||+.|++..|
T Consensus 131 ~~~la~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~liev~i~ 172 (172)
T cd02004 131 YDLVAEAFGGKGELVTTPEELKPALKRALA----S-GKPALINVIID 172 (172)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHHH----c-CCCEEEEEEcC
Confidence 778888886677888887776666666543 2 58999998654
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >smart00861 Transket_pyr Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.19 Score=47.60 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=76.1
Q ss_pred EEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCC-CCEEEEeCCCcccccCC-C-CCCccCHHHH
Q 040733 110 SILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDS-IPILAITGQVSQKLLGT-D-AFQEIPVVEV 186 (643)
Q Consensus 110 ~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~-vPvlvItg~~~~~~~g~-~-~~Q~~d~~~~ 186 (643)
+-....|++.+.+|.|+|....+|-++ +..+-+.-+...+..+-..+ +|+|+.... ....|. + .+|..++..+
T Consensus 52 ~~~gIaE~~~vg~a~GlA~~G~~pi~~--~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~--g~~~g~~G~tH~~~~~~~~ 127 (168)
T smart00861 52 IDTGIAEQAMVGFAAGLALAGLRPVVA--IFFTFFDRAKDQIRSDGAMGRVPVVVRHDS--GGGVGEDGPTHHSQEDEAL 127 (168)
T ss_pred EEcCcCHHHHHHHHHHHHHcCCCcEEE--eeHHHHHHHHHHHHHhCcccCCCEEEEecC--ccccCCCCccccchhHHHH
Confidence 337889999999999999887654443 45565556666666555554 766655521 111233 3 3888899999
Q ss_pred hhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 187 TRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 187 ~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
++.+.... +...+++++..+++.|+. ...||++|.++.
T Consensus 128 ~~~iP~~~v~~P~~~~e~~~~l~~a~~----~~~~p~~i~~~~ 166 (168)
T smart00861 128 LRAIPGLKVVAPSDPAEAKGLLRAAIR----RDDGPPVIRLER 166 (168)
T ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCCEEEEecC
Confidence 99887543 456777888888888873 235899998874
|
Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. |
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.17 Score=47.07 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=78.7
Q ss_pred CeEEe---cCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc--------cCC
Q 040733 108 IRSIL---PRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL--------LGT 175 (643)
Q Consensus 108 i~~i~---~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~--------~g~ 175 (643)
-+++. .-.=..+.-+|.|.+.+. +++.||++-= -++...+..|..|...++|+++|.-+..... .+.
T Consensus 19 ~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GD-G~f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~ 97 (153)
T PF02775_consen 19 RRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGD-GSFLMSLQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGG 97 (153)
T ss_dssp TEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEH-HHHHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTS
T ss_pred CeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCC-cceeeccchhHHHhhccceEEEEEEeCCcceEeccccccCcC
Confidence 45554 223345678899999985 6666666543 4444458999999999999999987554221 111
Q ss_pred C--------CCCccCHHHHhhccceeeeEeCCc--CcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 176 D--------AFQEIPVVEVTRYMTKHNYLVLDV--DDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 176 ~--------~~Q~~d~~~~~~~~tk~~~~v~~~--~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+ .+..+|...+.+.+--..++++++ +++.+.+++|++ ..||++|+|
T Consensus 98 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~-----~~gp~vIeV 153 (153)
T PF02775_consen 98 GRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE-----SGGPAVIEV 153 (153)
T ss_dssp TCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH-----SSSEEEEEE
T ss_pred cccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh-----CCCcEEEEc
Confidence 1 145678888999885557888887 888888888872 359999986
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >PRK09212 pyruvate dehydrogenase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.1 Score=47.36 Aligned_cols=151 Identities=18% Similarity=0.112 Sum_probs=86.3
Q ss_pred CcHHHHHHHHHHHCCC--CEEEEccCCCc-----HHHHHHHh-hCC-CeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEc
Q 040733 70 RKGADIIVEALERQGV--TTVFAYPGGAS-----IEIHQSLT-RSN-IRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVS 139 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV--~~vFg~PG~~~-----~~l~~al~-~~~-i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t 139 (643)
++..+++.+.|.++.- +.++.+..+-. ..+.+.|. +.+ =|++ ...-|++++.+|.|.|....||-|++-.
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~~ 83 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFMT 83 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEeeh
Confidence 4556666666665542 34555544321 11123332 232 3555 5679999999999999977777776432
Q ss_pred ---cchhhHHHHHHHHHhhh-------CCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeE-eCCcCcHHHHHH
Q 040733 140 ---SGPGVTNIMTGLMDAYS-------DSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIK 208 (643)
Q Consensus 140 ---~GpG~~N~~~gl~~A~~-------~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~ 208 (643)
...+.-.+..-+ |+. -++||++....-+....|....|.. ..+++.+...... ..++.++..+++
T Consensus 84 ~~f~~ra~dQi~~d~--a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~--ea~~r~iP~l~V~~P~d~~e~~~~l~ 159 (327)
T PRK09212 84 FNFSMQAIDQIVNSA--AKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCY--AAWYSHIPGLKVVAPYFAADCKGLLK 159 (327)
T ss_pred hhHHHHHHHHHHHHH--HHHhhccCCCcCccEEEEeCCCCCCCCCcccccCH--HHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 112222222322 233 2799988865433322222222444 3889988754443 556777777777
Q ss_pred HHHHHhhcCCCCeEEEEcccc
Q 040733 209 EAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 209 ~A~~~A~s~~~GPV~i~iP~D 229 (643)
.|++ . ++||+|-.|..
T Consensus 160 ~a~~----~-~~Pv~i~~~~~ 175 (327)
T PRK09212 160 TAIR----D-PNPVIFLENEI 175 (327)
T ss_pred HHHh----C-CCcEEEEEchh
Confidence 7764 2 48999966654
|
|
| >PRK11916 electron transfer flavoprotein subunit YdiR; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.16 Score=52.98 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=75.3
Q ss_pred cEEEEcC-Cch--hhHHHHHHHHHHhCCceeecCC---CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccC
Q 040733 274 PVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTTM---GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFN 347 (643)
Q Consensus 274 PvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~~---gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~ 347 (643)
.+|++|+ |.. +..+.+++||+.+|.-|-.|-. ..|.+|. ...+|..| . .-.+||.|.+|-+=.
T Consensus 195 ~vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~--~~QIGqTG---k------~V~P~lYiA~GISGA 263 (312)
T PRK11916 195 KRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMER--ERYIGVSG---V------LLKSDLYLTLGISGQ 263 (312)
T ss_pred CEEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCCh--hcEECCCC---C------CcCccEEEEeccccH
Confidence 3566544 554 3567899999999999988742 2357765 44455544 2 236799999997732
Q ss_pred ccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 348 ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 348 ~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
-....+ ......||-|+.|++..= ...+|+.|++|+.++|.+|.+.++
T Consensus 264 iQH~aG---m~~s~~IVAIN~Dp~API-F~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 264 IQHMVG---GNGAKVIVAINKDKNAPI-FNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred HHHHhh---cccCCEEEEECCCCCCCc-hhhCCeeEeeeHHHHHHHHHHHhh
Confidence 221111 223456999999997421 235899999999999999987753
|
|
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=94.66 E-value=1 Score=42.50 Aligned_cols=122 Identities=19% Similarity=0.098 Sum_probs=78.8
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
.-+++....- +.+.-+|-|.+.+. +--|+.++...++...+..|.+|...+.|+++|.-+...-..- .
T Consensus 35 ~i~~i~~rhE---~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~--------~ 102 (162)
T cd07038 35 GLRWVGNCNE---LNAGYAADGYARVK-GLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQA--------S 102 (162)
T ss_pred CceEEeeCCH---HHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCccccc--------c
Confidence 3455554332 22566777777776 4334455567777778999999999999999998765421100 0
Q ss_pred ccccccccCCCCCCCCCCC-CHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEE
Q 040733 554 ANRANSFLGDPLRKSEIFP-DMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVM 613 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~-d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~ 613 (643)
....+...+ .... |...+.+.+.....+|++++++.+.+++|+. .+||+.||++
T Consensus 103 ~~~~~~~~~------~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 103 GLLLHHTLG------DGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred ccceeeccc------ccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 000000000 0122 5788999999999999999988887777653 4589999874
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.21 Score=46.25 Aligned_cols=102 Identities=21% Similarity=0.187 Sum_probs=69.6
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+..+|.|++.+.. +.++.++ |.|. ...+..|.++...++|+++++-.....+. .. .
T Consensus 47 a~~~A~G~a~~~~-~~v~~~~~gpg~-~~~~~~l~~a~~~~~Pvl~i~~~~~~~~~---------~~---~--------- 103 (154)
T cd06586 47 AAGAAAGYARAGG-PPVVIVTSGTGL-LNAINGLADAAAEHLPVVFLIGARGISAQ---------AK---Q--------- 103 (154)
T ss_pred HHHHHHHHHHhhC-CEEEEEcCCCcH-HHHHHHHHHHHhcCCCEEEEeCCCChhhh---------cc---C---------
Confidence 6788889888874 5555556 6654 45577788999999997777744432110 00 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEE
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVM 613 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~ 613 (643)
.....|...+++.+.....++.+.++..+.+.+++ ..+||++|++.
T Consensus 104 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 104 TFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred cccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 02346778888888888888888888776666654 35789999874
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.5 Score=41.92 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=75.9
Q ss_pred CeEEecCChhH---HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccccc--------CC
Q 040733 108 IRSILPRHEQG---GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLL--------GT 175 (643)
Q Consensus 108 i~~i~~~hE~~---A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~--------g~ 175 (643)
-+++....=.. +.-+|.|.+.+. +++.||++.=|.-..+ +..+..|...++|+++|.-+.....+ +.
T Consensus 42 ~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~-~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~ 120 (178)
T cd02014 42 QRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAML-MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQ 120 (178)
T ss_pred CcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcC
Confidence 45554433233 455777877665 5677777655555545 67889999999999999865542211 10
Q ss_pred C----CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 176 D----AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 176 ~----~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
. .++..|...+.+.+--..+.+.+++++...+++|++ ..||+.|++..|
T Consensus 121 ~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~a~~-----~~~p~liev~~~ 173 (178)
T cd02014 121 PEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDEALA-----ADGPVVIDVVTD 173 (178)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 0 123467788888875567788888887776666654 248999998764
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >PLN00022 electron transfer flavoprotein subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.15 Score=54.14 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=76.3
Q ss_pred cEEEEcC-Cch--hhHHHHHHHHHHhCCceeecC--CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCc
Q 040733 274 PVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTT--MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE 348 (643)
Q Consensus 274 PvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~--~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~ 348 (643)
.+|++|+ |.. +..+.+++||+.+|.-|-.|- --.|.+|. ...+|..|. .-.+||.|.+|-+=.-
T Consensus 238 ~vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~--~~QIGqTGk---------~V~P~lYIA~GISGAi 306 (356)
T PLN00022 238 KVVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPN--DLQVGQTGK---------IVAPELYIAVGISGAI 306 (356)
T ss_pred CEEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCCh--HheeccCCC---------CcCCcEEEEEecchHH
Confidence 4666655 554 356789999999999998773 23466764 445555442 2367999999977321
Q ss_pred cccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 349 RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 349 ~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
.... -......||-|+.|++.-= ...+|+.|++|+.++|.+|.+.++.
T Consensus 307 QH~~---Gm~~s~~IVAIN~D~~API-F~~ADygIVgD~~evlP~Lie~lk~ 354 (356)
T PLN00022 307 QHLA---GMKDSKVIVAINKDADAPI-FQVADYGLVADLFEAVPELLEKLPE 354 (356)
T ss_pred HHHh---hcccCCEEEEECCCCCCCc-hhhcCeeEeeeHHHHHHHHHHHHHh
Confidence 1111 1223456899999987421 2358999999999999999988764
|
|
| >cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.21 Score=54.54 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhh
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVN 334 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~ 334 (643)
.-+++++.+++.|+++++|+++.|+... .....+.+|++.+|..+- +.......+..+.+.. .|..+.. ..++..
T Consensus 55 sWdeAl~~ia~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~--~g~~~~~-~~di~~ 130 (415)
T cd02761 55 SLEEAIEKAAEILKEAKRPLFYGLGTTVCEAQRAGIELAEKLGAIID-HAASVCHGPNLLALQD--SGWPTTT-LGEVKN 130 (415)
T ss_pred CcHHHHHHHHHHHHhhcCCEEEEcccchHHHHHHHHHHHHHHCCCcc-ccccccccchHHHHHh--CCCcccc-HHHHHh
Confidence 4678999999999999999887444333 345678899999997432 1111111111111111 1222111 223335
Q ss_pred cCCEEEEecCccCccccCcc-c------cc-----cCCceEEEEcCCcccccCCCCCCeeEe---cCHHHHHHHHHHHH
Q 040733 335 ECDLLLAAGVRFNERMTSKL-E------DF-----ATRAKIVHIDIDSNEIGKVKLPDVSIC---ADAKLVFNRMNMIL 398 (643)
Q Consensus 335 ~aDlvL~vG~~~~~~~t~~~-~------~~-----~~~~~iI~Id~d~~~i~~~~~~~~~i~---~D~~~~L~~L~~~l 398 (643)
++|+||++|+.+.+.....+ . .+ ...+|+|.||+......+ .++..+. ++-..++..|...+
T Consensus 131 ~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~--~Ad~~l~i~pgtd~~l~~~l~~~l 207 (415)
T cd02761 131 RADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAK--LADIHLQIDPGSDYELLAALRALL 207 (415)
T ss_pred cCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhh--hcceEEecCCCCcHHHHHHHHHHH
Confidence 89999999998643321111 0 11 234689999987776644 2344343 33334444555444
|
Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins. |
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.76 Score=50.87 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=93.5
Q ss_pred CCCCcHHHHHHHHHHHCCCC--EEEEccCC-----C----cHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcE
Q 040733 67 DKPRKGADIIVEALERQGVT--TVFAYPGG-----A----SIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPG 134 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~--~vFg~PG~-----~----~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~g 134 (643)
...++..+++.++|.++.-+ .||.+-.+ . ...|.+.+.. =|++ ...-|++.+.+|.|.|....||-
T Consensus 139 ~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp--~R~id~gIaEq~~vg~AaGlA~~G~rPi 216 (464)
T PRK11892 139 MVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGA--RRVIDTPITEHGFAGIGVGAAFAGLKPI 216 (464)
T ss_pred ccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCc--cceeecCccHHHHHHHHHHHHhCCCEEE
Confidence 34456777777777666532 35554321 1 2345554421 2555 56799999999999999877777
Q ss_pred EEEEccchhhHHHHHHHH-Hhh--------hCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeee-EeCCcCcHH
Q 040733 135 VCLVSSGPGVTNIMTGLM-DAY--------SDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY-LVLDVDDIP 204 (643)
Q Consensus 135 v~~~t~GpG~~N~~~gl~-~A~--------~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~ 204 (643)
|.+.++- =+..++.-|. ++. ..+.||+++..+-+... .+.+|..+...+++.+-.... ...++.++.
T Consensus 217 v~~~~~~-f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~ 293 (464)
T PRK11892 217 VEFMTFN-FAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VAAQHSQDYAAWYSHIPGLKVVAPYSAADAK 293 (464)
T ss_pred EEEehHH-HHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CCCccccCHHHHHhhCCCCEEEEeCCHHHHH
Confidence 7654321 1223333332 223 67899999865444332 445888888999999876544 356777888
Q ss_pred HHHHHHHHHhhcCCCCeEEEE
Q 040733 205 RIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 205 ~~l~~A~~~A~s~~~GPV~i~ 225 (643)
.+++.|++. ++|||+-
T Consensus 294 ~ll~~ai~~-----~~Pv~il 309 (464)
T PRK11892 294 GLLKAAIRD-----PNPVIFL 309 (464)
T ss_pred HHHHHHhhC-----CCcEEEE
Confidence 887777642 4899984
|
|
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.29 Score=48.07 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=85.6
Q ss_pred EEEEccCCCcHHHHHHHhhCC-CeEEecCC---hhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCE
Q 040733 87 TVFAYPGGASIEIHQSLTRSN-IRSILPRH---EQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPI 161 (643)
Q Consensus 87 ~vFg~PG~~~~~l~~al~~~~-i~~i~~~h---E~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPv 161 (643)
.++.=.|.+...+...+.-.. -+++.... =.-+.-+|.|.+.+. +++.||++-=| ++.-....|..|...++|+
T Consensus 17 ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv 95 (205)
T cd02003 17 VVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDG-SYLMLHSEIVTAVQEGLKI 95 (205)
T ss_pred EEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccc-hhhccHHHHHHHHHcCCCC
Confidence 344445666555555543222 45554322 122445777877665 46666664444 4444457888899999999
Q ss_pred EEEeCCCcccc--------cCCC------------------CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhh
Q 040733 162 LAITGQVSQKL--------LGTD------------------AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIAT 215 (643)
Q Consensus 162 lvItg~~~~~~--------~g~~------------------~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~ 215 (643)
++|.-+..... .+.. ..+..|...+.+.+--...++.+++++...+++|+.
T Consensus 96 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~--- 172 (205)
T cd02003 96 IIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA--- 172 (205)
T ss_pred EEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh---
Confidence 88886543211 0100 013467788888886667889998888888888763
Q ss_pred cCCCCeEEEEcccc
Q 040733 216 SGRPGPVLIDIPVD 229 (643)
Q Consensus 216 s~~~GPV~i~iP~D 229 (643)
.+||+.|++..|
T Consensus 173 --~~gp~lIeV~v~ 184 (205)
T cd02003 173 --SDRTTVIVIKTD 184 (205)
T ss_pred --CCCCEEEEEEee
Confidence 358999999876
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.41 Score=45.86 Aligned_cols=104 Identities=22% Similarity=0.245 Sum_probs=70.0
Q ss_pred HHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccccc---------CCC---CCCccCHHHH
Q 040733 120 IFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLL---------GTD---AFQEIPVVEV 186 (643)
Q Consensus 120 ~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~---------g~~---~~Q~~d~~~~ 186 (643)
.-+|.|.+.+. +++.||++-=|- +.=....|..|...++|+++|.-+...... +.. .++..|...+
T Consensus 54 lp~aiGa~la~~~~~vv~i~GDG~-f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~ 132 (177)
T cd02010 54 LPGAIGAKLVYPDRKVVAVSGDGG-FMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKY 132 (177)
T ss_pred HHHHHHHHHhCCCCcEEEEEcchH-HHhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHH
Confidence 34777777765 466776654443 333346788899999999999754331110 000 1234577778
Q ss_pred hhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 187 ~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+.+--..+++.+++++...+++|+. .+||..|+++.|
T Consensus 133 a~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~liev~~~ 170 (177)
T cd02010 133 AESFGAKGYRIESADDLLPVLERALA-----ADGVHVIDCPVD 170 (177)
T ss_pred HHHCCCEEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 88886677899998888888888764 358999999876
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.1 Score=42.34 Aligned_cols=114 Identities=14% Similarity=0.046 Sum_probs=75.4
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....- ..+.-+|-|.+.+. +++.|+++. --++...+..|.+|...+.|+++|.-+-.... .+
T Consensus 36 i~~v~~rhE---~~A~~mAdgyar~s-g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~---------~~ 102 (162)
T cd07037 36 FRLHVRVDE---RSAAFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPEL---------RG 102 (162)
T ss_pred ceEEeccCh---HHHHHHHHHHHHhh-CCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCHHh---------cC
Confidence 455544332 22566777887776 466665554 44555568999999999999988885322110 00
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH------HHHHHHHHHh-----CCCcEEEEEE
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD------VRAAIQLMLE-----TPGPYLLDVM 613 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e------L~~al~~al~-----~~gp~lIeV~ 613 (643)
+ . .....|-..+.+.+-....+++++++ +.+.+++|+. .+||++||++
T Consensus 103 -~---~--------~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 103 -T---G--------ANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred -C---C--------CCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 0 0 02346777888888888889988887 6777766653 4689999985
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.22 Score=51.97 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=75.4
Q ss_pred cEEEEcC-Cch--hhHHHHHHHHHHhCCceeecCC---CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccC
Q 040733 274 PVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTTM---GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFN 347 (643)
Q Consensus 274 PvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~~---gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~ 347 (643)
.+|++|+ |.. +..+.+++||+.+|.-|-.|-. ..|.+| |...+|..|. .-.+||.|.+|-+=.
T Consensus 196 ~vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p--~~~QIGqTGk---------~V~P~lYiA~GISGa 264 (313)
T PRK03363 196 RLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWME--HERYVGISNL---------MLKPELYLAVGISGQ 264 (313)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCC--HHheecCCCC---------CcCccEEEEEccccH
Confidence 4666655 554 3457799999999999988742 235777 4455665542 236799999997732
Q ss_pred ccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 348 ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 348 ~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
-.... -......||-|+.||+..= ...+|+.|++|+.++|..|.+.++
T Consensus 265 iQH~~---Gm~~s~~IVAIN~Dp~API-F~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 265 IQHMV---GANASQTIFAINKDKNAPI-FQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred HHHHh---hcccCCEEEEEcCCCCCCc-hhhCCeeEeeeHHHHHHHHHHHhh
Confidence 11111 1223456899999997421 235899999999999999988764
|
|
| >PRK00481 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.12 Score=52.12 Aligned_cols=68 Identities=25% Similarity=0.256 Sum_probs=50.0
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+...++++|++|++|+++.-....++.. ..+++++|.|+.++..+.. ..++.+.+|+.++|..|.+.+
T Consensus 171 a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~--~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 171 AYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDS--LFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCC--ccCEEEECCHHHHHHHHHHHh
Confidence 4456789999999999975322222222 2356789999999887654 368999999999999987654
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.32 Score=56.41 Aligned_cols=155 Identities=14% Similarity=0.032 Sum_probs=97.1
Q ss_pred CCcHHHHHHHHHHHCC--CCEEEEccCC-CcHHHHHH-----HhhC-CCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEE
Q 040733 69 PRKGADIIVEALERQG--VTTVFAYPGG-ASIEIHQS-----LTRS-NIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLV 138 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~G--V~~vFg~PG~-~~~~l~~a-----l~~~-~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~ 138 (643)
++...++..+.|.+.+ ...++++.++ ......+. +.+. +=|+| ...-|++++.+|.|+|+..|...++ .
T Consensus 348 ~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~-~ 426 (653)
T TIGR00232 348 ALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPYG-G 426 (653)
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEEE-E
Confidence 3445555666665543 3456665444 11111111 3222 22544 5889999999999999987864444 5
Q ss_pred ccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhcccee-eeEeCCcCcHHHHHHHHHHHhh
Q 040733 139 SSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKH-NYLVLDVDDIPRIIKEAFFIAT 215 (643)
Q Consensus 139 t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~ 215 (643)
|..+=+.=+...+..+...+.||+++....... .|. ..+|.+.+..+++.+... .+...++.++..+++.|+.
T Consensus 427 tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~-~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~--- 502 (653)
T TIGR00232 427 TFLMFVDYARPAIRLAALMKLPVIYVYTHDSIG-VGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALE--- 502 (653)
T ss_pred EhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccC-CCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh---
Confidence 666655566778888889999999887432222 232 257989999999987642 3344555556555555542
Q ss_pred cCCCCeEEEEcccc
Q 040733 216 SGRPGPVLIDIPVD 229 (643)
Q Consensus 216 s~~~GPV~i~iP~D 229 (643)
...||+||.++..
T Consensus 503 -~~~gP~~irl~r~ 515 (653)
T TIGR00232 503 -SQDGPTALILSRQ 515 (653)
T ss_pred -cCCCcEEEEEcCC
Confidence 3469999999875
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.47 Score=45.72 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc---------cCC-----CCCCccCH
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL---------LGT-----DAFQEIPV 183 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~---------~g~-----~~~Q~~d~ 183 (643)
+.-+|.|.+.+. +++.||++-=| ++.-.+..|..|...++|+++|.-+..... .+. ......|.
T Consensus 55 ~lp~aiGa~la~~~~~vv~i~GDG-~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 133 (186)
T cd02015 55 GLPAAIGAKVARPDKTVICIDGDG-SFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDF 133 (186)
T ss_pred hHHHHHHHHHhCCCCeEEEEEccc-HHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCH
Confidence 556778877765 46666664433 555566789999999999999886554311 010 01123577
Q ss_pred HHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 184 ~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..+.+.+--+..++.+.+++.+.+++|+. ..||+.|++..|
T Consensus 134 ~~~a~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~liev~~~ 174 (186)
T cd02015 134 VKLAEAYGIKGLRVEKPEELEAALKEALA-----SDGPVLLDVLVD 174 (186)
T ss_pred HHHHHHCCCceEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 88888887778899988888777777764 358999999876
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.44 Score=55.28 Aligned_cols=115 Identities=17% Similarity=0.040 Sum_probs=81.3
Q ss_pred EEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHh
Q 040733 110 SILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVT 187 (643)
Q Consensus 110 ~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~ 187 (643)
+-...-|++++.+|.|.|.-.|...+ +.|..+=+.=+...|..+...+.||+++........ |.+ .+|.+.+..++
T Consensus 405 i~~GIaEq~mv~~aaGlA~~~G~~P~-~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~-G~DG~THq~iedla~l 482 (663)
T PRK12753 405 IHYGVREFGMTAIANGIAHHGGFVPY-TATFLMFVEYARNAARMAALMKARQIMVYTHDSIGL-GEDGPTHQPVEQLASL 482 (663)
T ss_pred EEeeecHHHHHHHHHHHHHhCCCeEE-EEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCccc-CCCCcccccHHHHHHH
Confidence 33667899999999999987775333 456677667788888888999999999844333322 433 58999999999
Q ss_pred hccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 188 ~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
|.+.. ..|-.|.|.. .+..+++.|.....||+||.++..
T Consensus 483 R~iPn--~~v~~PaD~~-E~~~~~~~al~~~~gP~~irl~R~ 521 (663)
T PRK12753 483 RLTPN--FSTWRPCDQV-EAAVAWKLAIERHNGPTALILSRQ 521 (663)
T ss_pred hcCCC--CEEEccCCHH-HHHHHHHHHHhcCCCCEEEEecCC
Confidence 99873 3444455432 234555555544469999999975
|
|
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.89 Score=44.49 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccccc---------CC--------C----
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLL---------GT--------D---- 176 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~---------g~--------~---- 176 (643)
+.-+|.|.+.+. +|+.||++-=| ++.=.+..|..|...++|+++|.-+...... +. .
T Consensus 62 ~lpaaiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~ 140 (202)
T cd02006 62 TVPAALGVAAADPDRQVVALSGDY-DFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSS 140 (202)
T ss_pred hhHHHHhHHhhCCCCeEEEEEeCh-HhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcccccccccccccc
Confidence 445788877765 46666665333 3333447899999999999999865442110 00 0
Q ss_pred --CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 177 --AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 177 --~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..+..|...+.+.+--..+++.+++++...+++|+..... ..||+.|+|..|
T Consensus 141 ~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~-~~~p~liev~i~ 194 (202)
T cd02006 141 ELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAE-HRVPVVVEAILE 194 (202)
T ss_pred ccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhccc-CCCcEEEEEEec
Confidence 0123677888888877789999999999999988865322 248999999765
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >PRK14138 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.13 Score=51.94 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=50.4
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+.+.+.++|++|++|+++.-.....+.. ....+++|.|+.++..++. ..++.+.+|+.++|.+|.+.+
T Consensus 172 ~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~--~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 172 AIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD--IATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc--ceeEEEeCCHHHHHHHHHHHh
Confidence 4456789999999999986443333321 2245789999998877664 468999999999999987643
|
|
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.89 Score=42.63 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=68.9
Q ss_pred ccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHH-HhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCC
Q 040733 487 GFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIK-AENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPL 565 (643)
Q Consensus 487 G~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~-~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~ 565 (643)
+.+.+.|-|+.++. ++.+|++.+=| +...++.|.++. .+++|+++|+-.-+.++-..-.|..
T Consensus 44 e~aa~~aAg~~~~~-~~~~v~~~~sG-~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~--------------- 106 (157)
T TIGR03845 44 EEGVGICAGAYLAG-KKPAILMQSSG-LGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQIP--------------- 106 (157)
T ss_pred HHHHHHHHHHHHhc-CCcEEEEeCCc-HHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccc---------------
Confidence 44677777777764 67888888887 566789999999 9999999998655543321100100
Q ss_pred CCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEE
Q 040733 566 RKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVM 613 (643)
Q Consensus 566 ~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~ 613 (643)
...--..+-+.+++++.++++++++ .++++|+ +.+||+.|=+.
T Consensus 107 ----~g~~~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 107 ----MGRATPKLLDTLGIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred ----hhhhhHHHHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 0000111224456689999999998 8888776 35689877553
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.42 Score=55.50 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=79.4
Q ss_pred EecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhh
Q 040733 111 ILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTR 188 (643)
Q Consensus 111 i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~ 188 (643)
-...-|++++.+|.|.|...|.. .++.|..+=..=+...|..+...+.||+++....... .|. ..+|-+.+..++|
T Consensus 407 ~~GIaEq~mv~~AaGlA~~~G~~-P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~-~g~DG~THq~iedia~lR 484 (661)
T PTZ00089 407 RFGVREHAMCAIMNGIAAHGGFI-PFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIG-LGEDGPTHQPVETLALLR 484 (661)
T ss_pred eeeecHHHHHHHHHHHHHcCCCe-EEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCcee-cCCCCCCcccHHHHHHHh
Confidence 36678999999999999966632 2334566666678888999999999999995222221 233 2589999999999
Q ss_pred ccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 189 ~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+. +..|..|.+..+ +..+++.|.....||+||.+|..
T Consensus 485 ~iP--n~~V~~PaD~~E-~~~~l~~al~~~~gP~~irl~R~ 522 (661)
T PTZ00089 485 ATP--NLLVIRPADGTE-TSGAYALALANAKTPTILCLSRQ 522 (661)
T ss_pred cCC--CcEEEecCCHHH-HHHHHHHHHHcCCCCEEEEecCC
Confidence 986 344444554333 24455555534569999999976
|
|
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.4 Score=39.63 Aligned_cols=136 Identities=12% Similarity=0.004 Sum_probs=81.2
Q ss_pred CEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhC-CCCEEE
Q 040733 86 TTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN-IMTGLMDAYSD-SIPILA 163 (643)
Q Consensus 86 ~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N-~~~gl~~A~~~-~vPvlv 163 (643)
..|.+=.|.....++... +.+-+++..-.=..+.-+|.|.+.+..++.||++ |=|... .+..+..+... ++|+++
T Consensus 15 ~~vv~d~G~~~~~~~~~~-~~~~~~~~~gsmG~~lp~AiGa~~a~~~~Vv~i~--GDG~f~m~~~el~t~~~~~~~~i~~ 91 (157)
T cd02001 15 TPIVSTTGYASRELYDVQ-DRDGHFYMLGSMGLAGSIGLGLALGLSRKVIVVD--GDGSLLMNPGVLLTAGEFTPLNLIL 91 (157)
T ss_pred CEEEeCCCHhHHHHHHhh-cCCCCEEeecchhhHHHHHHHHHhcCCCcEEEEE--CchHHHhcccHHHHHHHhcCCCEEE
Confidence 345555565544442221 2224554422222233478888877766666654 444443 34566776666 599999
Q ss_pred EeCCCcccc-cC-CCCCC-ccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 164 ITGQVSQKL-LG-TDAFQ-EIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 164 Itg~~~~~~-~g-~~~~Q-~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
|.-+..... .+ +...+ ..|...+.+.+--..+++.+++++.+.+++|+. ..||+.|++..|
T Consensus 92 vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~vi~v~i~ 155 (157)
T cd02001 92 VVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-----TTGPTLLHAPIA 155 (157)
T ss_pred EEEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 986544321 11 11222 467888888876667888888888877777764 358999998764
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.11 Score=52.34 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=46.5
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc-cccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM 394 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L 394 (643)
+...+++||++|+||+++.-.....+. .....+++|.|+.++.........++.+.+|+.++|..|
T Consensus 169 ~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 169 MEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 345678999999999998543322222 122356788899888765533557899999999998764
|
Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity. |
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=93.54 E-value=1 Score=52.13 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=96.1
Q ss_pred CcHHHHHHHHHHHCCCC--EEEEc----cCCCcHHHHHHHhh-CCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 040733 70 RKGADIIVEALERQGVT--TVFAY----PGGASIEIHQSLTR-SNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~--~vFg~----PG~~~~~l~~al~~-~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~G 141 (643)
.+.++++.++|.+..-+ .|+.+ +|+.-+ +.|.+ .+=|++ ...-|++++.+|.|.|...-+|-|++ ..
T Consensus 356 ~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl---~~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~--fs 430 (677)
T PLN02582 356 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFARRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YS 430 (677)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCccch---HHHHHHcCccccccCcCHHHHHHHHHHHHHCCCeEEEEe--cH
Confidence 36778888888876543 45554 443322 23332 233444 56789999999999999666666654 45
Q ss_pred hhhHHHHHH-HHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 142 PGVTNIMTG-LMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 142 pG~~N~~~g-l~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
+=..-++.- +.++...+.||+++.-........-..+|.+....+++.+..+.. ...++.++..+++.|+. ..+
T Consensus 431 ~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~----~~~ 506 (677)
T PLN02582 431 SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAA----IDD 506 (677)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----CCC
Confidence 444455553 366678899998775322221111224777788888998875444 34566667767666654 235
Q ss_pred CeEEEEcccch
Q 040733 220 GPVLIDIPVDV 230 (643)
Q Consensus 220 GPV~i~iP~Dv 230 (643)
|||+|..|...
T Consensus 507 gPv~IR~pr~~ 517 (677)
T PLN02582 507 RPSCFRYPRGN 517 (677)
T ss_pred CCEEEEEecCC
Confidence 99999999763
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.43 Score=55.36 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=78.3
Q ss_pred EecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHh
Q 040733 111 ILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVT 187 (643)
Q Consensus 111 i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~ 187 (643)
-...-|++++.+|.|.|+.. |..-+| .|..+=.+-+...+..+...+.||+++....... .|. ..+|-+.+..++
T Consensus 396 ~~GIaEq~mv~~AaGlA~~G~G~~P~~-~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~-~G~DG~THq~iedla~l 473 (654)
T PLN02790 396 RFGVREHGMGAICNGIALHSSGLIPYC-ATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIG-LGEDGPTHQPIEHLASL 473 (654)
T ss_pred EeeechHHHHHHHHHHHhcCCCcEEEE-EecHHHHHHHHHHHHHHHhcCCCeEEEEECCcee-ecCCCCCcccHHHHHHh
Confidence 36678999999999999975 653333 4666655667778888899999998886332222 243 258999999999
Q ss_pred hccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 188 ~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
|.+.. ..|-.|.+..++ ..+++.|.....||++|.+|..
T Consensus 474 R~iPn--l~V~~PaD~~E~-~~~l~~al~~~~gP~~irl~R~ 512 (654)
T PLN02790 474 RAMPN--ILMLRPADGNET-AGAYKVAVTNRKRPTVLALSRQ 512 (654)
T ss_pred cCCCC--cEEEeCCCHHHH-HHHHHHHHHcCCCCEEEEecCC
Confidence 99874 334444443332 3345555443469999999986
|
|
| >COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.33 Score=50.35 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=74.7
Q ss_pred EEEEcCCch---hhHHHHHHHHHHhCCceeecCC--CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCcc
Q 040733 275 VLCVGGGCL---NSSEELRKFVGLTGIPVTCTTM--GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNER 349 (643)
Q Consensus 275 vIl~G~g~~---~~~~~l~~lae~lg~PV~tt~~--gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~ 349 (643)
+|+.|+... +..+.+.+||+.+|.-|-.|-. -.|.+|.+ +.+|..|. .-.+||-|++|-+=.-.
T Consensus 197 iVVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d--~QVGqTGk---------~V~P~LYIA~GISGAiQ 265 (313)
T COG2025 197 IVVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPND--RQVGQTGK---------TVAPKLYIALGISGAIQ 265 (313)
T ss_pred EEEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCcc--ceecCCCc---------EecccEEEEEecccHHH
Confidence 566655333 3345579999999999988732 26777764 45665442 34789999999663211
Q ss_pred ccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 350 MTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 350 ~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
... -......||-|+.|++.- =...+|+.|++|+..++.+|.+.|..
T Consensus 266 Hla---Gm~~Sk~IVAINkD~nAP-IF~~ADyGiVgDl~~ivP~Lie~l~~ 312 (313)
T COG2025 266 HLA---GMKDSKVIVAINKDPNAP-IFQVADYGIVGDLFKIVPALIEALKK 312 (313)
T ss_pred HHh---hcccCcEEEEEcCCCCCC-ccccCCeeeeeeHHHHHHHHHHHHhc
Confidence 111 122345688999988742 12468999999999999999987753
|
|
| >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.4 Score=41.83 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=69.2
Q ss_pred cCCC-eEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHH-H-HHHHHh--------CCCeEEEEEeCCC
Q 040733 472 KRAR-QLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQE-L-AAIKAE--------NIPVKILLINNQY 540 (643)
Q Consensus 472 ~~p~-~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~e-L-~Ta~~~--------~lpv~ivV~NN~~ 540 (643)
.-|. +++..+- +=-..++.|.|.++. ++++|+-+.=+.|+.-.-| | ..+... ++|++++. ..++
T Consensus 40 ~~p~~R~~~~gI--aEq~~vg~AaGlA~~--G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~-~~gg 114 (167)
T cd07036 40 KFGPDRVIDTPI--AEAGIVGLAVGAAMN--GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRG-PNGG 114 (167)
T ss_pred hCCCceEEeCCC--cHHHHHHHHHHHHHc--CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEE-eCCC
Confidence 4466 7776432 112257777887775 4556655556667653222 3 223333 58888776 5555
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
++.. + . .+...+..+.+++ |+..+...++.|++..++.+++.++|+++-
T Consensus 115 ~~~~--------G-~-------------ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~P~~~~ 164 (167)
T cd07036 115 GIGG--------G-A-------------QHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDDPVIFL 164 (167)
T ss_pred CCCc--------C-h-------------hhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 3310 0 0 0112335666666 788888899999999999999999999763
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain |
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.74 Score=44.74 Aligned_cols=149 Identities=14% Similarity=0.089 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHCCC---CE-EEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhH
Q 040733 71 KGADIIVEALERQGV---TT-VFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVT 145 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV---~~-vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~ 145 (643)
..-+++.+++.+.|+ +. ++.=-|. .......+ .+....... ..+.-+|.|.+.+. +|+.|+++-=|--+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~d~ii~~D~G~-~~~~~~~~---~~~~~~g~m-G~glpaAiGa~la~p~r~Vv~i~GDGs~f~ 83 (193)
T cd03375 9 SILKALAKALAELGIDPEKVVVVSGIGC-SSRLPYYF---NTYGFHTLH-GRALAVATGVKLANPDLTVIVVSGDGDLAA 83 (193)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCh-hceehhhc---cccchhhhh-ccHHHHHHHHHHhCCCCeEEEEeccchHhh
Confidence 356788888888886 33 4443443 22111111 111111000 22445888888876 466666543333223
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccc-cC----------C---CCC-----CccCHHHHhhcc-ceee--eEeCCcCcH
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKL-LG----------T---DAF-----QEIPVVEVTRYM-TKHN--YLVLDVDDI 203 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~-~g----------~---~~~-----Q~~d~~~~~~~~-tk~~--~~v~~~~~i 203 (643)
-.+..+..|...++||++|.-+..... .+ . ... ...|...+.+.+ .++. .++.+++++
T Consensus 84 m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el 163 (193)
T cd03375 84 IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQL 163 (193)
T ss_pred ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHH
Confidence 446889999999999999886443211 00 0 000 124666677766 2332 357788888
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 204 PRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 204 ~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
...+++|++ .+||+.|++..+
T Consensus 164 ~~al~~al~-----~~gp~vIev~~~ 184 (193)
T cd03375 164 KEIIKKAIQ-----HKGFSFVEVLSP 184 (193)
T ss_pred HHHHHHHHh-----cCCCEEEEEECC
Confidence 777777764 358999998654
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.61 Score=53.97 Aligned_cols=155 Identities=15% Similarity=0.037 Sum_probs=99.6
Q ss_pred CcHHHHHHHHHHHCC--CCEEEEccCCCc-HHH-----HHHHhhC-CCe-EEecCChhHHHHHHHHHHHHhCCcEEEEEc
Q 040733 70 RKGADIIVEALERQG--VTTVFAYPGGAS-IEI-----HQSLTRS-NIR-SILPRHEQGGIFAAEGYARSSGTPGVCLVS 139 (643)
Q Consensus 70 ~~~a~~lv~~L~~~G--V~~vFg~PG~~~-~~l-----~~al~~~-~i~-~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t 139 (643)
+...++..+.|.+.+ ...++++.++-. ... .+.+.+. +=| +-...-|++++.+|-|.|...|. -.++.|
T Consensus 355 ~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~-~Pf~~t 433 (663)
T PRK12754 355 IASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGGF-LPYTST 433 (663)
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCCC-eEEEEe
Confidence 344456666666654 455666655421 111 1233222 124 44677899999999999987774 333456
Q ss_pred cchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 140 SGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 140 ~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
..+=..-+...|..+...+.||+++........ |.+ .+|.+.+..++|.+. +..|-.|.+..+ +..+++.|...
T Consensus 434 f~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~-G~DG~THq~iEdla~lR~iP--n~~V~~PaD~~E-~~~~~~~a~~~ 509 (663)
T PRK12754 434 FLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGPTHQPVEQVASLRVTP--NMSTWRPCDQVE-SAVAWKYGVER 509 (663)
T ss_pred eHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc-CCCCCCcccHHHHHHHhcCC--CcEEecCCCHHH-HHHHHHHHHhC
Confidence 677666788888888999999988764433332 433 589999999999987 444445555333 24555555544
Q ss_pred CCCeEEEEcccc
Q 040733 218 RPGPVLIDIPVD 229 (643)
Q Consensus 218 ~~GPV~i~iP~D 229 (643)
..||+||.++..
T Consensus 510 ~~gP~yirl~R~ 521 (663)
T PRK12754 510 QDGPTALILSRQ 521 (663)
T ss_pred CCCCEEEEeCCC
Confidence 569999999874
|
|
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.1 Score=41.80 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccC-CHHHHH-HHHHhCCCeEEEEEeCCCchhhHHHHHHh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM-NLQELA-AIKAENIPVKILLINNQYLGMNVEYEDRY 551 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m-~~~eL~-Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~ 551 (643)
|.+++..+- +=...++.|.|.++.. -++++... ..|.. ....|- .+...++|+++++- ..+++.-
T Consensus 38 p~r~i~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~--~~f~~ra~dqi~~~~a~~~~pv~~~~~-~~g~~~~------- 104 (156)
T cd07033 38 PDRFIDVGI--AEQNMVGIAAGLALHG-LKPFVSTF--SFFLQRAYDQIRHDVALQNLPVKFVGT-HAGISVG------- 104 (156)
T ss_pred CCCeEEeCh--hHHHHHHHHHHHHHCC-CeEEEEEC--HHHHHHHHHHHHHHHhccCCCeEEEEE-CCcEecC-------
Confidence 566665321 1122567777888764 45555544 44443 355566 67788899887554 4433210
Q ss_pred hcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEEEE
Q 040733 552 FEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLLDV 612 (643)
Q Consensus 552 ~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lIeV 612 (643)
.... .....+...+.+.+ |+.-+...+++|++..++++++.++|++|-.
T Consensus 105 -~~G~-----------tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 105 -EDGP-----------THQGIEDIALLRAIPNMTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred -CCCc-----------ccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 0000 11233333444444 6677788999999999999999888998754
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=93.10 E-value=3.3 Score=39.78 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhC-CcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccccc-----CC----CCCCccCHHHHhh
Q 040733 119 GIFAAEGYARSSG-TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLL-----GT----DAFQEIPVVEVTR 188 (643)
Q Consensus 119 A~~~A~Gyar~sg-~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~-----g~----~~~Q~~d~~~~~~ 188 (643)
+.-+|.|.+-+.. ++.+|++- --++.-.+..+..|...++|+++|.-+.....+ +. ..++..|...+.+
T Consensus 55 ~l~~aiGaala~~~~~vv~i~G-DG~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~ 133 (183)
T cd02005 55 SVPAALGAALAAPDRRVILLVG-DGSFQMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPE 133 (183)
T ss_pred hHHHHHHHHHhCCCCeEEEEEC-CchhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHH
Confidence 3456777776664 55555533 233333456788999999999999865442211 11 1223457777777
Q ss_pred ccc----eeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 189 YMT----KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 189 ~~t----k~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+- -+..++.+++++.+.+++|++ + .+||+.|++..|
T Consensus 134 a~G~~~~~~~~~v~~~~el~~al~~a~~---~-~~~p~liev~~~ 174 (183)
T cd02005 134 VFGGGGGGLSFRVKTEGELDEALKDALF---N-RDKLSLIEVILP 174 (183)
T ss_pred HhCCCccccEEEecCHHHHHHHHHHHHh---c-CCCcEEEEEEcC
Confidence 764 456788888888887777775 1 258999999765
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.69 Score=52.47 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=79.1
Q ss_pred cchHHHHHHHHhCCCCe-EEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCC
Q 040733 488 FGLPAAMGAAVANPGAI-VVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLR 566 (643)
Q Consensus 488 ~glpaAiGaalA~p~~~-Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~ 566 (643)
.+.-+|-|.+... +++ |++++..-|+...++.|.+|.+.++|+++|.-...... ++.+. ..+
T Consensus 50 ~A~~mAdgyar~t-g~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~---------~~~~~--~~~----- 112 (535)
T PRK07524 50 GAGFMADGYARVS-GKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRAS---------LGKGR--GKL----- 112 (535)
T ss_pred HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhh---------cCCCC--ccc-----
Confidence 3677888888877 455 44455555666678999999999999999886433210 01000 000
Q ss_pred CCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 567 KSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 567 ~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
...+|-..+.+.+-....+|++++++.+.+++|+. ..||+.|+++.|-.
T Consensus 113 --~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (535)
T PRK07524 113 --HELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL 166 (535)
T ss_pred --cccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHH
Confidence 12358889999999999999999999888888774 46899999997753
|
|
| >TIGR00300 conserved hypothetical protein TIGR00300 | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.43 Score=50.26 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=53.2
Q ss_pred HhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCC----CCCCeeEecCHHHHHHHHHHHHh
Q 040733 331 YAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV----KLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 331 ~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~----~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
..++++|+||++.+.+...-+++.. +...+++.||+.|....|- .-..+.++.|+..||..|.+.|.
T Consensus 335 ~~~~~a~~vimlaTmLHSIAtGNm~--Ps~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 335 ELLQGADMVLMLSTMLHSIAVGNLL--PSGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred HHhccCCeehhHHHHHHHHhhcccc--cccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 4678999999999999877777643 3446999999999987653 33468899999999999987664
|
All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family. |
| >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
Probab=92.68 E-value=4 Score=38.67 Aligned_cols=148 Identities=17% Similarity=0.088 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCCC----cHHHHHHHhhC-C-CeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 72 GADIIVEALERQGVTTVFAYPGGA----SIEIHQSLTRS-N-IRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~PG~~----~~~l~~al~~~-~-i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.++.|.+.+++. -+.++.-..-. .....+.|.+. + .|++ ....|++.+.+|.|+|+..-+|-++ .+..+=+
T Consensus 3 ~~~~l~~~~~~~-~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~-~~~a~Fl 80 (167)
T cd07036 3 INEALDEEMERD-PRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVE-IMFADFA 80 (167)
T ss_pred HHHHHHHHHhcC-CCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEE-eehHHHH
Confidence 355666665544 33333322211 13455666654 4 4787 5689999999999999865443333 3555544
Q ss_pred HHHHHHHHH--hhhC-------CCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHh
Q 040733 145 TNIMTGLMD--AYSD-------SIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIA 214 (643)
Q Consensus 145 ~N~~~gl~~--A~~~-------~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A 214 (643)
..++--|.. |+.+ +.||+++...-.. .+.+..|......+++.+-..... ..++.++..+++.+++.
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~--~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~- 157 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGG--IGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRD- 157 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCC--CCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC-
Confidence 455554422 3333 5899988632221 223333444457899988655443 45667777777777652
Q ss_pred hcCCCCeEEEEccc
Q 040733 215 TSGRPGPVLIDIPV 228 (643)
Q Consensus 215 ~s~~~GPV~i~iP~ 228 (643)
+|||.+--|+
T Consensus 158 ----~~P~~~~e~k 167 (167)
T cd07036 158 ----DDPVIFLEHK 167 (167)
T ss_pred ----CCcEEEEecC
Confidence 3899987663
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain |
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.33 Score=51.99 Aligned_cols=109 Identities=21% Similarity=0.196 Sum_probs=69.7
Q ss_pred cccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHH---HHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccC
Q 040733 486 MGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAA---IKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLG 562 (643)
Q Consensus 486 mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~T---a~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g 562 (643)
=|-+++.|.|+.++...+++|.+ =-.|+.-.++-|.. ..-|++|+++||--=+.+|....-|+...
T Consensus 35 E~~av~iaaG~~latG~~~~v~m-QnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~---------- 103 (361)
T TIGR03297 35 EGAAVGLAAGAYLATGKRAAVYM-QNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQ---------- 103 (361)
T ss_pred chHHHHHHHHHHHhcCCccEEEE-ecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHH----------
Confidence 46689999999999755555554 45555555665544 46799999998865554442211111111
Q ss_pred CCCCCCCCCCCHHHHHhHCCCCEEEe-CChhHH----HHHHHHHHhCCCcEEEEEE
Q 040733 563 DPLRKSEIFPDMLKFAEACGIPAARV-TKKKDV----RAAIQLMLETPGPYLLDVM 613 (643)
Q Consensus 563 ~p~~~~~~~~d~~~lA~a~G~~~~~V-~~~~eL----~~al~~al~~~gp~lIeV~ 613 (643)
.---.++-+++|+++..+ ++.+|. .++++.+++.++|+.|-|.
T Consensus 104 --------G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 104 --------GRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred --------hHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 112357889999999999 455554 4555556668889877654
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.89 Score=49.68 Aligned_cols=137 Identities=11% Similarity=0.110 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccc--cCCCCcHHHHHh
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRM--VGMFGTVYANYA 332 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~--~g~~~~~~~~~~ 332 (643)
.-+++++.+++.|.++++++++.|++.. .....+.+|++.+|..+-. .+ .+. ..+...+. .|.... ...++
T Consensus 61 sWdeAl~~ia~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~~~~~--~~--~~~-~~~~~~~~~~~g~~~~-~~~di 134 (421)
T TIGR03129 61 SYEEAIEKAAEILKNAKRPLIYGWSSTSCEAQRAGLELAEKLGAVIDN--TA--SVC-HGPSLLALQEVGWPSC-TLGEV 134 (421)
T ss_pred ChHHHHHHHHHHHHhhcCCeEEEcccCCHHHHHHHHHHHHHHCCCccc--cc--hhc-cccHHHHHHhcCCccc-cHHHH
Confidence 4678999999999999998887665443 3445678999988864311 01 010 00111110 111111 12233
Q ss_pred hhcCCEEEEecCccCccccC---cc--------ccc-cCCceEEEEcCCcccccCCCCCCeeEe-cCHHHHHHHHHHHH
Q 040733 333 VNECDLLLAAGVRFNERMTS---KL--------EDF-ATRAKIVHIDIDSNEIGKVKLPDVSIC-ADAKLVFNRMNMIL 398 (643)
Q Consensus 333 l~~aDlvL~vG~~~~~~~t~---~~--------~~~-~~~~~iI~Id~d~~~i~~~~~~~~~i~-~D~~~~L~~L~~~l 398 (643)
..++|+||++|+.+.+.... ++ ... ...+++|.||+........-...+.+. ++-..++..|...+
T Consensus 135 ~~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~i~pgtd~~l~~~l~~~l 213 (421)
T TIGR03129 135 KNRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQIKPGSDYELISALRAVL 213 (421)
T ss_pred hhcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceeccCCCCcHHHHHHHHHHH
Confidence 34799999999986432111 01 011 234689999987776654322222222 22234444555444
|
Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme. |
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=92.36 E-value=3.5 Score=39.60 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhCC-CCEEEEeCCCccc-ccC---CCCCCccCHHHHhhccce
Q 040733 119 GIFAAEGYARSSGTPGVCLVSSGPGVTN-IMTGLMDAYSDS-IPILAITGQVSQK-LLG---TDAFQEIPVVEVTRYMTK 192 (643)
Q Consensus 119 A~~~A~Gyar~sg~~gv~~~t~GpG~~N-~~~gl~~A~~~~-vPvlvItg~~~~~-~~g---~~~~Q~~d~~~~~~~~tk 192 (643)
+.-+|.|.+.+.+++.||++ |=|... .+..+..|...+ .|+++|.-+.... ..+ .......|...+.+.+--
T Consensus 47 ~lpaAiGa~la~~~~Vv~i~--GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~ 124 (181)
T TIGR03846 47 ASSIGLGLALATDRTVIVID--GDGSLLMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGI 124 (181)
T ss_pred HHHHHHHHHHcCCCcEEEEE--cchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCC
Confidence 44578888777777777665 433333 346788887777 5999998544321 111 011124677788887755
Q ss_pred eeeE-eCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 193 HNYL-VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 193 ~~~~-v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
...+ +.+++++...++ |+. .+||+.|++..|
T Consensus 125 ~~~~~v~~~~~l~~al~-a~~-----~~~p~li~v~~~ 156 (181)
T TIGR03846 125 RNVEKVADEEELRDALK-ALA-----MKGPTFIHVKVK 156 (181)
T ss_pred CeEEEeCCHHHHHHHHH-HHc-----CCCCEEEEEEeC
Confidence 5555 888887777774 432 358999999876
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=2.8 Score=47.62 Aligned_cols=109 Identities=18% Similarity=0.073 Sum_probs=75.7
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+... +++.++++- --|+...+..+..|...+.|+++|.-.=.... .+... ..
T Consensus 55 A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~---------~~~~~-~~-------- 115 (542)
T PRK08266 55 AGYMAFGYARST-GRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSAL---------IGKGR-GH-------- 115 (542)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhh---------ccCCC-Cc--------
Confidence 455888888876 456666553 44556668999999999999988874211100 00000 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
....+|...+++.+-....++++++++.+.+++|+. ..||+.|+++.|-
T Consensus 116 ~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 116 LHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred ceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 012258888999988889999999998888877764 4689999999874
|
|
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.8 Score=41.40 Aligned_cols=101 Identities=23% Similarity=0.259 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhC-CcEEEEEccchhhHH--HHHHHHHhhhCCCCEEEEeCCCcccc-cCC-----------CCCCccCH
Q 040733 119 GIFAAEGYARSSG-TPGVCLVSSGPGVTN--IMTGLMDAYSDSIPILAITGQVSQKL-LGT-----------DAFQEIPV 183 (643)
Q Consensus 119 A~~~A~Gyar~sg-~~gv~~~t~GpG~~N--~~~gl~~A~~~~vPvlvItg~~~~~~-~g~-----------~~~Q~~d~ 183 (643)
+.-+|.|.+.+.. ++.++++ |=|... .+..|..|...++|+++|.-+..... .+. ......|.
T Consensus 56 gl~~AiGa~la~p~~~Vv~i~--GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~ 133 (178)
T cd02008 56 SIGVAIGMAKASEDKKVVAVI--GDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDI 133 (178)
T ss_pred HHHHHhhHHhhCCCCCEEEEe--cChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCH
Confidence 3456777777763 5555553 444432 36889999999999999986654321 110 00123577
Q ss_pred HHHhhccceeeeEeCCcCcHH---HHHHHHHHHhhcCCCCeEEEEc
Q 040733 184 VEVTRYMTKHNYLVLDVDDIP---RIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 184 ~~~~~~~tk~~~~v~~~~~i~---~~l~~A~~~A~s~~~GPV~i~i 226 (643)
..+.+.+--..+++.+++++. +.+++|+ + .+||..|++
T Consensus 134 ~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~----~-~~gp~lI~v 174 (178)
T cd02008 134 EALVRAIGVKRVVVVDPYDLKAIREELKEAL----A-VPGVSVIIA 174 (178)
T ss_pred HHHHHHCCCCEEEecCccCHHHHHHHHHHHH----h-CCCCEEEEE
Confidence 888888866677888888887 4455554 3 358998876
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.28 E-value=2.6 Score=48.35 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=83.2
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
.-+++....- ..+.-+|-|.+.+. +++-+|++. --|+...++.+.+|...+.|+++|.-.=.... .
T Consensus 42 ~i~~i~~rhE---~~A~~mAdgYar~t-g~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~---------~ 108 (574)
T PRK07979 42 GIDHVLVRHE---QAAVHMADGLARAT-GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSL---------I 108 (574)
T ss_pred CceEEEeCcH---HHHHHHHHHHHHHh-CCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhc---------c
Confidence 3455554432 22556888888776 455555553 33556678999999999999999885422110 0
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
+ .. .....|...+++.+-....+|++++++...+++|+. ..||+.|+++.|-.
T Consensus 109 ~----~~--------~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 109 G----YD--------AFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL 166 (574)
T ss_pred C----CC--------CCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 0 00 024478899999999999999999999998888875 46999999998754
|
|
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.8 Score=45.17 Aligned_cols=148 Identities=18% Similarity=0.106 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHHCCC--CEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhC-CcEEEEEccchhh--H
Q 040733 71 KGADIIVEALERQGV--TTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG-TPGVCLVSSGPGV--T 145 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV--~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg-~~gv~~~t~GpG~--~ 145 (643)
..-..+.++|.+.|+ +.+..+.|.......-...+ ...+...| .-+.-+|.|.+.+.. ++.||++ |=|. .
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~--~~~~~g~m-G~alpaAiGaklA~pd~~VV~i~--GDG~~~~ 102 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL--SHGLHTLH-GRAIAFATGAKLANPDLEVIVVG--GDGDLAS 102 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc--cCccchhh-ccHHHHHHHHHHHCCCCcEEEEe--CccHHHh
Confidence 466788999999887 34444444333222111111 12222333 335678889888864 4455443 5443 3
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCccc-----------ccCC-------CC-CCccCHHHHhhccce-ee--eEeCCcCcH
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQK-----------LLGT-------DA-FQEIPVVEVTRYMTK-HN--YLVLDVDDI 203 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~-----------~~g~-------~~-~Q~~d~~~~~~~~tk-~~--~~v~~~~~i 203 (643)
-.+.-+..|...++||++|.-+.... ..|. +. ...+|...+.+.+-. +. ..+.+++++
T Consensus 103 mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL 182 (301)
T PRK05778 103 IGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQL 182 (301)
T ss_pred ccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHH
Confidence 45677999999999999997533211 1110 00 123566777666532 22 257778888
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 204 PRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 204 ~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
..+|++|++ .+||++|+|..
T Consensus 183 ~~ai~~A~~-----~~GpalIeV~~ 202 (301)
T PRK05778 183 VELIKKAIS-----HKGFAFIDVLS 202 (301)
T ss_pred HHHHHHHHh-----CCCCEEEEEcC
Confidence 888887774 35999999854
|
|
| >PTZ00408 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.35 Score=48.78 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=49.5
Q ss_pred HHHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
....++.++|++|++|+++.-.....+... ...+++|.|+.++..... ..+..+.+++.++|.+|.+.+
T Consensus 165 ~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~--~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 165 EIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYS--QFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCc--cCCEEEECCHHHHHHHHHHHH
Confidence 344568899999999999864433333221 245689999999876554 357788899999999887654
|
|
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.1 Score=47.62 Aligned_cols=108 Identities=19% Similarity=0.074 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCCC-C--CCccCHHHHhhccc
Q 040733 118 GGIFAAEGYARSSGTPGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGTD-A--FQEIPVVEVTRYMT 191 (643)
Q Consensus 118 ~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~--~Q~~d~~~~~~~~t 191 (643)
.|+.+|.|..+.. .-.++++..|=|..+. ..++..|...++|+|+|.-+.... ++.. . ....|...+.+.+-
T Consensus 130 ~AiGaAla~k~~~-~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~-~~~~~~~~~~~~d~~~~a~a~G 207 (341)
T TIGR03181 130 HAAGVAYALKLRG-EDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWA-ISVPRSKQTAAPTLAQKAIAYG 207 (341)
T ss_pred HHHhHHHHHHhhC-CCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCc-cccchhhhhCCcCHHHHHhhCC
Confidence 4555555544433 2355666678888772 356778999999999999755321 1111 1 11245666777665
Q ss_pred eeeeEeCCcCc--HHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 192 KHNYLVLDVDD--IPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 192 k~~~~v~~~~~--i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
-..+.|...+. +.+.+.+|++.|..+. ||+.|++-.
T Consensus 208 ~~~~~Vdg~d~~av~~a~~~A~~~a~~~~-gP~lIev~t 245 (341)
T TIGR03181 208 IPGVQVDGNDVLAVYAVTKEAVERARSGG-GPTLIEAVT 245 (341)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEe
Confidence 56777766554 4678888999888764 999999854
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.84 Score=42.83 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccccc----------C---CCCCCccCH
Q 040733 118 GGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLL----------G---TDAFQEIPV 183 (643)
Q Consensus 118 ~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~----------g---~~~~Q~~d~ 183 (643)
.+.-+|.|.+.+. +++.+|++-=|- +...+.++..|...++|+++|.-+...... + ....+..|.
T Consensus 50 ~~~~~a~Gaa~a~~~~~vv~~~GDG~-~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 128 (168)
T cd00568 50 YGLPAAIGAALAAPDRPVVCIAGDGG-FMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDF 128 (168)
T ss_pred hhHHHHHHHHHhCCCCcEEEEEcCcH-HhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCH
Confidence 3445778888777 455555543332 223568899998999999999865442211 0 012234577
Q ss_pred HHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 184 ~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
..+.+.+--...++.+++++.+.+++|+ + ..||+.|++.
T Consensus 129 ~~~a~~~G~~~~~v~~~~~l~~a~~~a~----~-~~~p~~i~v~ 167 (168)
T cd00568 129 AALAEAYGAKGVRVEDPEDLEAALAEAL----A-AGGPALIEVK 167 (168)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHH----h-CCCCEEEEEE
Confidence 8888877555667777666666666554 3 3489999874
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.1 Score=52.58 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=61.1
Q ss_pred eEEEEecCccccCC--HHHHHH-HHHhCCC---eEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHH
Q 040733 504 IVVDIDGDGSFIMN--LQELAA-IKAENIP---VKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKF 577 (643)
Q Consensus 504 ~Vv~i~GDGsf~m~--~~eL~T-a~~~~lp---v~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~l 577 (643)
-.|++-||.+|-=- +.|-.+ +.-.+.+ .+.||+||+ +|+.- .| ...-.......+
T Consensus 649 lpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNq-iGftT-----------------~p-~~~Rss~y~td~ 709 (1228)
T PRK12270 649 LPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQ-VGFTT-----------------AP-ESSRSSEYATDV 709 (1228)
T ss_pred eEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecC-ccccc-----------------Cc-cccccchhhHHH
Confidence 35778899998542 455333 3334566 788888887 45421 01 000122345678
Q ss_pred HhHCCCCEEEe--CChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 578 AEACGIPAARV--TKKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 578 A~a~G~~~~~V--~~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
|++++++.+.| .+++....+.+.|++ -++++|||+.+.+.
T Consensus 710 ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRr 755 (1228)
T PRK12270 710 AKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRR 755 (1228)
T ss_pred HhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEee
Confidence 88999999988 466666666666654 58999999999754
|
|
| >CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated | Back alignment and domain information |
|---|
Probab=91.91 E-value=2.2 Score=45.09 Aligned_cols=153 Identities=18% Similarity=0.104 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHHCCC--CEEEEccCCC-----cHHHHHHHhhC-C-CeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEc
Q 040733 70 RKGADIIVEALERQGV--TTVFAYPGGA-----SIEIHQSLTRS-N-IRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVS 139 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV--~~vFg~PG~~-----~~~l~~al~~~-~-i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t 139 (643)
++-.+++.+.|.++.- +.++.+-++- ....++.|.+. + -|++ ....|++++.+|.|.|....+|-|+...
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~ 83 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMN 83 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 3455566666665543 3455554432 23445666553 4 3677 5679999999999999977777665322
Q ss_pred cc---hhhHHHHHHHHHhhh-----CCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHH
Q 040733 140 SG---PGVTNIMTGLMDAYS-----DSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEA 210 (643)
Q Consensus 140 ~G---pG~~N~~~gl~~A~~-----~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A 210 (643)
+- .+.=.+.+.++-... -++||++....-.....|....|.+ ..+++.+..+... ..++.++..+++.|
T Consensus 84 ~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~~--ea~~~~iPgl~V~~Psd~~d~~~~l~~a 161 (327)
T CHL00144 84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRL--ESYFQSVPGLQIVACSTPYNAKGLLKSA 161 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccccH--HHHHhcCCCCEEEEeCCHHHHHHHHHHH
Confidence 11 223333343322221 3889988854322212222212443 4899998876544 55777777777776
Q ss_pred HHHhhcCCCCeEEEEcccc
Q 040733 211 FFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 211 ~~~A~s~~~GPV~i~iP~D 229 (643)
++ .+|||||--|..
T Consensus 162 ~~-----~~~Pv~ire~~~ 175 (327)
T CHL00144 162 IR-----SNNPVIFFEHVL 175 (327)
T ss_pred Hh-----CCCcEEEEEcHH
Confidence 64 249999974433
|
|
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=91.87 E-value=5.3 Score=37.97 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=80.2
Q ss_pred EEEccCCCcHHHHHHHhhC-CCeEEecCChhH---HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEE
Q 040733 88 VFAYPGGASIEIHQSLTRS-NIRSILPRHEQG---GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPIL 162 (643)
Q Consensus 88 vFg~PG~~~~~l~~al~~~-~i~~i~~~hE~~---A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvl 162 (643)
++.=-|.........+.-. +-+++.... .+ +.-+|.|.+.+. +++.+|++-=| ++.-.+..+..|...+.|++
T Consensus 20 iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG-~f~~~~~el~ta~~~~~p~~ 97 (178)
T cd02002 20 IVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDG-SFMYTIQALWTAARYGLPVT 97 (178)
T ss_pred EEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCc-hhhccHHHHHHHHHhCCCeE
Confidence 4444455555555444322 356666555 33 334788888776 45555554322 33333578888888899999
Q ss_pred EEeCCCccccc-------------------CCC-CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeE
Q 040733 163 AITGQVSQKLL-------------------GTD-AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPV 222 (643)
Q Consensus 163 vItg~~~~~~~-------------------g~~-~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV 222 (643)
+|.-+...... ..+ .....|...+.+.+--..+++.+++++.+.+++|++ ..||+
T Consensus 98 ~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~ 172 (178)
T cd02002 98 VVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDEALREALA-----EGGPA 172 (178)
T ss_pred EEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCCHHHHHHHHHHHHh-----CCCCE
Confidence 99865542110 000 012367778888876567788887777766666654 35899
Q ss_pred EEEcc
Q 040733 223 LIDIP 227 (643)
Q Consensus 223 ~i~iP 227 (643)
.|++.
T Consensus 173 vi~v~ 177 (178)
T cd02002 173 LIEVV 177 (178)
T ss_pred EEEEE
Confidence 99873
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.31 Score=48.56 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=46.8
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRM 394 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L 394 (643)
+.+.++++|++|++|+++.-.....+.. ...++++|.|+.++..+. ...++.|.+|+.++|++|
T Consensus 158 ~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~--~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 158 AVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLS--PIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCC--CcCCEEEECCHHHHHHHh
Confidence 3456789999999999875333322221 135678999999988766 457899999999999876
|
coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity. |
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.55 Score=53.73 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=77.2
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++.=| |+...+..|..|.+.+.|+++|.-.-....+ + ..
T Consensus 65 A~~~A~gyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~---------~----~~-------- 122 (571)
T PRK07710 65 AIHAAEGYARIS-GKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVI---------G----SD-------- 122 (571)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCcccc---------C----CC--------
Confidence 567888888776 56777776444 4455689999999999999998864432210 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++...+++|+. .+||+.|+++.|-
T Consensus 123 ~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 123 AFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM 176 (571)
T ss_pred CccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhH
Confidence 124468888999888889999999998888887664 3599999999864
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.5 Score=54.05 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=77.5
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+..+ +++.++++ ---|....++.|.+|.+.+.|+++|.-.-..... +. .
T Consensus 64 A~~mAdgyar~t-g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~---------~~----~-------- 121 (570)
T PRK06725 64 AIHAAEGYARAS-GKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLI---------GK----D-------- 121 (570)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCcccc---------cC----C--------
Confidence 566888888776 45555554 3335555689999999999999998854332110 00 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++.+.+++|+. .+||+.|+++.|-.
T Consensus 122 ~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 176 (570)
T PRK06725 122 GFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQ 176 (570)
T ss_pred CCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccchh
Confidence 124468889999999889999999999888888774 36999999998754
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.75 E-value=4.1 Score=46.86 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc---------cCCC----CC-CccCH
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL---------LGTD----AF-QEIPV 183 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~---------~g~~----~~-Q~~d~ 183 (643)
+.-+|.|.+.+. +|+.||++-=| |+.-.+..|..|...++|+++|.-+..... .+.. .+ +..|.
T Consensus 440 glp~aiGa~la~p~r~vv~i~GDG-~f~~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~ 518 (588)
T PRK07525 440 AFPAIIGAKIACPDRPVVGFAGDG-AWGISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSY 518 (588)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCc-hHhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCH
Confidence 567888888876 67888887766 555557899999999999999985543221 0100 12 23688
Q ss_pred HHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 184 ~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..+.+.+--+.+++.+++++...+++|+.... ..||+.|++..|
T Consensus 519 ~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~--~~~p~lIev~~~ 562 (588)
T PRK07525 519 AGIAEAMGAEGVVVDTQEELGPALKRAIDAQN--EGKTTVIEIMCN 562 (588)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHhcCC--CCCcEEEEEEec
Confidence 88888887777899999998888888876431 248999999987
|
|
| >PRK05333 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.37 Score=49.93 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=50.7
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
+...++++|++|+||+++.-.....+-. ...+.++|.|+.++...... .++.|.+|+.++|..|.+.|.-
T Consensus 208 a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~--~~~~i~g~~~evL~~l~~~l~~ 279 (285)
T PRK05333 208 ARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL--LTLKVEASCAQALAALVARLGL 279 (285)
T ss_pred HHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc--eeEEEeCCHHHHHHHHHHHhCC
Confidence 4456789999999999986443222111 12355899999888776553 4889999999999999877653
|
|
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=3.6 Score=48.96 Aligned_cols=162 Identities=11% Similarity=0.012 Sum_probs=90.7
Q ss_pred CCCCcHHHHHHHHHHHCC-----CCEEEEccCCCc--H------------------------HHHHHHhhC-CCe-EEec
Q 040733 67 DKPRKGADIIVEALERQG-----VTTVFAYPGGAS--I------------------------EIHQSLTRS-NIR-SILP 113 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~G-----V~~vFg~PG~~~--~------------------------~l~~al~~~-~i~-~i~~ 113 (643)
..++..-.++.+.|.+++ .++|+++-.+-. . ..+..+.++ +=+ +-..
T Consensus 500 ~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR~ie~G 579 (896)
T PRK13012 500 GKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQILEEG 579 (896)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCCCCcEEecc
Confidence 456677778888888877 566776654432 1 111222222 223 3467
Q ss_pred CChhHHHH--HHHHHHHHh-CCc-EEEEEccch-hhHHHHHHHHHhhhCCCC-EEEEeCCCcccccCCC--CCCccCHHH
Q 040733 114 RHEQGGIF--AAEGYARSS-GTP-GVCLVSSGP-GVTNIMTGLMDAYSDSIP-ILAITGQVSQKLLGTD--AFQEIPVVE 185 (643)
Q Consensus 114 ~hE~~A~~--~A~Gyar~s-g~~-gv~~~t~Gp-G~~N~~~gl~~A~~~~vP-vlvItg~~~~~~~g~~--~~Q~~d~~~ 185 (643)
..|+++.. +|.|-+.+. |.+ -.+..|..+ |+.=+.--+-.|-..+.. +++++- ..+-..+.+ .+|.+....
T Consensus 580 IaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T-~gg~tlg~dG~THQ~~esla 658 (896)
T PRK13012 580 ITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGAT-AGRTTLGGEGLQHQDGHSHL 658 (896)
T ss_pred hhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEe-CcccccCCCCCCCcchHhHH
Confidence 89999944 555554443 332 333345554 233333333233222333 444432 222222222 478888888
Q ss_pred Hhhccce-eeeEeCCcCcHHHHHHHHHHHhh-cCCCCeEEEEcccc
Q 040733 186 VTRYMTK-HNYLVLDVDDIPRIIKEAFFIAT-SGRPGPVLIDIPVD 229 (643)
Q Consensus 186 ~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~-s~~~GPV~i~iP~D 229 (643)
+++.+.. ..++..+..++..+++.+++.+. ....+|+||.+...
T Consensus 659 l~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~ 704 (896)
T PRK13012 659 LASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNE 704 (896)
T ss_pred HHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCC
Confidence 9998764 45666777788889998887642 33468999998654
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=1.2 Score=51.04 Aligned_cols=107 Identities=17% Similarity=0.088 Sum_probs=77.1
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++- --|+.-.+..|.+|...+.|+++|.-+-....+ + ..
T Consensus 55 A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~---------~----~~-------- 112 (576)
T PRK08611 55 AALAAAAYAKLT-GKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLL---------G----TD-------- 112 (576)
T ss_pred HHHHHHHHHHHh-CCceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccc---------C----CC--------
Confidence 556777777776 466666663 345555689999999999999998865443210 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~ 617 (643)
.....|...+.+.+-....++++++++.+.+++|+ ...||+.|+++.|-.
T Consensus 113 ~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv~ 166 (576)
T PRK08611 113 FFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDLP 166 (576)
T ss_pred CccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhhh
Confidence 12446889999999888899999998888777765 456999999998743
|
|
| >PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.22 Score=52.06 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=51.9
Q ss_pred cccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHh-CC---CeEEEEEeCCCchhhHHHHHHhhcccccc
Q 040733 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAE-NI---PVKILLINNQYLGMNVEYEDRYFEANRAN 558 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~-~l---pv~ivV~NN~~~g~~~~~q~~~~~~~~~~ 558 (643)
|-+||+++-|.||++-+|+..|+||+|||.+--. +..=|.+.++ +- -.++=|+.=|||-|-.. ....
T Consensus 140 GELGYaLshA~GA~~DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~p--------Til~ 211 (379)
T PF09364_consen 140 GELGYALSHAFGAVFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKISNP--------TILA 211 (379)
T ss_dssp SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB---------HHH
T ss_pred cchhhHHHHHhhcccCCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCccccCC--------eEee
Confidence 6799999999999999999999999999997654 2222322222 10 12222333335554210 0000
Q ss_pred cccCCCCCCCCCCCCHHHHHhHCCCCEEEeCC
Q 040733 559 SFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590 (643)
Q Consensus 559 ~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~ 590 (643)
+ ...-++.++.+++|.+-+.|+.
T Consensus 212 r---------~~~~eL~~lf~G~Gy~p~~Veg 234 (379)
T PF09364_consen 212 R---------MSDEELEALFRGYGYEPIFVEG 234 (379)
T ss_dssp H---------S-HHHHHHHHHHTTEEEEEEE-
T ss_pred e---------cCHHHHHHHHHhCCCeEEEEec
Confidence 0 1223688899999998888765
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.71 Score=53.32 Aligned_cols=106 Identities=19% Similarity=0.142 Sum_probs=76.6
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++- --|+...+..|.+|...++|+++|.-.-....+ + ..
T Consensus 81 A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~---------~----~~-------- 138 (612)
T PRK07789 81 AGHAAEGYAQAT-GRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLI---------G----TD-------- 138 (612)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------C----CC--------
Confidence 566788888776 456565554 445555689999999999999998864332110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++.+.+++|+. ..||+.|++..|-
T Consensus 139 ~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 139 AFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred cCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 124468889999988888999999998888887764 3589999999874
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.2 Score=51.31 Aligned_cols=108 Identities=21% Similarity=0.193 Sum_probs=77.5
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+..+++.||++ .=.|+...++.|.+|...+.|+++|.-.-.... .+ ..
T Consensus 53 A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~---------~~----~~-------- 111 (588)
T TIGR01504 53 ASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRAR---------LH----KE-------- 111 (588)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccc---------cC----CC--------
Confidence 455677777665345666554 344566678999999999999999885433211 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+.+.+-....+|++++++.+.|++|+. .+||+.|+|+.|-.
T Consensus 112 ~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (588)
T TIGR01504 112 DFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQ 166 (588)
T ss_pred cccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchh
Confidence 124468889999999899999999999888888774 45899999998754
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.38 E-value=3.1 Score=46.94 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=75.5
Q ss_pred chHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++.||+ +---|+...+..|.+|...+.|+++|.-+-..... ...
T Consensus 51 A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~~~--------------~~~------- 108 (514)
T PRK07586 51 ATGAADGYARMA-GKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATYHR--------------KYD------- 108 (514)
T ss_pred HHHHHHHHHHHH-CCCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchhcc--------------CCC-------
Confidence 556777777766 4666554 43445666688899999999999988854321100 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++.+.+++|+. ..||+.|+++.|-.
T Consensus 109 ~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~ 163 (514)
T PRK07586 109 APLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVA 163 (514)
T ss_pred cccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchh
Confidence 023468889999988889999999988887777663 36899999998854
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.30 E-value=2.4 Score=48.54 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=82.0
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|-|.+..+ +++.++++-=| |+...++.|.+|...+.|+++|.-.-....
T Consensus 43 i~~i~~rhE~---~A~~mAdgyar~t-g~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~----------- 107 (574)
T PRK06466 43 VEHILVRHEQ---AATHMADGYARAT-GKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTL----------- 107 (574)
T ss_pred ceEEEeCcHH---HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccc-----------
Confidence 4555543322 2455778887776 56666666444 555568999999999999999885433210
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.+.. .....|...+++.+-....+|++++++...+++|+. .+||+.|+++.|-
T Consensus 108 -------~~~~---~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 108 -------IGED---AFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred -------cCCC---cccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 0000 124468889999988899999999999888888774 2689999999884
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.26 E-value=1 Score=51.16 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=78.3
Q ss_pred chHHHHHHHHhCCCCeEEE-EecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVD-IDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~-i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++-|| .+.-=|+...+..|.+|..-+.|+++|.-.=.. . ..+..
T Consensus 51 Aa~mAdgyar~T-GkpgV~~~tsGPGatN~~tgla~A~~d~~Pll~itGqv~~-~-------------~~g~~------- 108 (550)
T COG0028 51 AAFAADGYARAT-GKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPT-S-------------LIGTD------- 108 (550)
T ss_pred HHHHHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCccc-c-------------ccCcc-------
Confidence 567788887776 455444 444446677789999999999999888751110 0 00110
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQE 618 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~~ 618 (643)
.....|...+.+.+-...++|.+++++.+.+++|+. .+||++|+++.|-..
T Consensus 109 afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~ 164 (550)
T COG0028 109 AFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLA 164 (550)
T ss_pred hhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHhh
Confidence 135579999999999999999999999999988874 458999999876543
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=1.3 Score=51.00 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=77.0
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccC-CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIM-NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m-~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+....+++.+|++-=|--.. .+..+.+|.+.+.|+++|.-+-..... . ..
T Consensus 54 A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~---------~----~~-------- 112 (591)
T PRK11269 54 ASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARL---------H----KE-------- 112 (591)
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------C----CC--------
Confidence 5667888777663467777775554333 478999999999999988864332110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++...+++|+. .+||+.|+++.|-
T Consensus 113 ~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 113 DFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred cccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 023468889999988889999999998888887764 3589999999874
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.2 Score=50.80 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=76.4
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++- .-|+...+..+.+|...++|+++|.-+=....+ . ..
T Consensus 50 A~~~A~gyar~t-g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~-----------~--~~-------- 107 (547)
T PRK08322 50 AAFMAATYGRLT-GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRS-----------K--QG-------- 107 (547)
T ss_pred HHHHHHHHHHhh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEecccccccc-----------C--CC--------
Confidence 566788887776 456666554 456666789999999999999988853221100 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+.+.+-....+|++++++.+.+++|+. ..||+.|+++.|-
T Consensus 108 ~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (547)
T PRK08322 108 SFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDI 161 (547)
T ss_pred ccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 023468888898888888999999998888887764 3589999999874
|
|
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=91.04 E-value=3.8 Score=42.15 Aligned_cols=146 Identities=13% Similarity=0.110 Sum_probs=85.5
Q ss_pred HHHHHHHHHHCCC---CEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhC-CcEEEEEccchhhHH--
Q 040733 73 ADIIVEALERQGV---TTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG-TPGVCLVSSGPGVTN-- 146 (643)
Q Consensus 73 a~~lv~~L~~~GV---~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg-~~gv~~~t~GpG~~N-- 146 (643)
-..+++.|.+.++ +.++....+...-+.. ..+ .+.+...| .-|.-+|.|.+.+.. ++.||++ |=|..-
T Consensus 28 ~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~-~~~--~~~~~~~~-G~alPaAiGaklA~Pdr~VV~i~--GDG~f~~~ 101 (277)
T PRK09628 28 LKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSS-YVN--CNTVHTTH-GRAVAYATGIKLANPDKHVIVVS--GDGDGLAI 101 (277)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhc-cCC--CCceeecc-ccHHHHHHHHHHHCCCCeEEEEE--CchHHHHh
Confidence 4568899988863 3454444444322222 112 33343344 367789999999874 5555543 554432
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCccccc-----------CC-------CC-CCccCHHHHhhccce-e--eeEeCCcCcHH
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLL-----------GT-------DA-FQEIPVVEVTRYMTK-H--NYLVLDVDDIP 204 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~-----------g~-------~~-~Q~~d~~~~~~~~tk-~--~~~v~~~~~i~ 204 (643)
...-+..|...++||++|.-+....-. +. +. ...+|...+.+.+-- + ..++.+++++.
T Consensus 102 g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~ 181 (277)
T PRK09628 102 GGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLE 181 (277)
T ss_pred hHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHH
Confidence 334556689999999999743321110 00 00 012466777666532 2 24788888888
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 205 RIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 205 ~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..|++|++ .+||++|++..+
T Consensus 182 ~al~~Al~-----~~Gp~lIeV~~~ 201 (277)
T PRK09628 182 KLLVKGFS-----HKGFSFFDVFSN 201 (277)
T ss_pred HHHHHHHh-----CCCCEEEEEcCC
Confidence 88888775 359999998653
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.88 Score=51.86 Aligned_cols=106 Identities=13% Similarity=0.042 Sum_probs=75.7
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+|++-=| |+...+..+.+|...+.|+++|.-.-....+ . ..
T Consensus 54 A~~~A~gyar~t-g~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~---------~----~~-------- 111 (552)
T PRK08617 54 AAFMAAAIGRLT-GKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADR---------L----KR-------- 111 (552)
T ss_pred HHHHHHhHhhhc-CCCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCccccc---------C----CC--------
Confidence 455677777666 56777776544 4444688999999999999988853321110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|-..+++.+-....++++++++...+++|+. ..||+.||++.|-
T Consensus 112 ~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 112 THQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred CccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 024467788999988889999999998888887764 3589999999774
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.7 Score=49.51 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=74.4
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++- --|+.-.++.|.+|...+.|+++|.-+=.... .+.+. ..+
T Consensus 53 A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~---------~~~~~--~~~------ 114 (544)
T PRK07064 53 AVNMADAHARVS-GGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPY---------LDQDL--GYI------ 114 (544)
T ss_pred HHHHHHHHHHhc-CCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCccc---------ccCCC--ccc------
Confidence 556778887776 455555543 33555568999999999999999886422100 00000 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
...+|...+++.+-....++++++++...+++|+. .+||+.|+++.|-
T Consensus 115 -~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 115 -HEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred -ccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 12358889999888889999999988877777663 3699999999764
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=90.87 E-value=2.5 Score=48.66 Aligned_cols=107 Identities=18% Similarity=0.142 Sum_probs=77.2
Q ss_pred chHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++-+++ +-.-|+...++.|.+|...+.|+++|.-.-.... .+. .
T Consensus 61 A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~---------~~~----~-------- 118 (595)
T PRK09107 61 AGHAAEGYARST-GKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHL---------IGS----D-------- 118 (595)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhh---------cCC----C--------
Confidence 556677877766 4555544 4455666678999999999999998885433210 000 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++.+.+++|+. ..||+.|+|+.|-.
T Consensus 119 ~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 173 (595)
T PRK09107 119 AFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQ 173 (595)
T ss_pred CCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCChh
Confidence 124468889999988888999999999888888775 36899999998754
|
|
| >TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type | Back alignment and domain information |
|---|
Probab=90.77 E-value=1.7 Score=50.76 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHh------CCCcEEEEcCCch-hhHHHHHHHHHH-hCCceeecCCCCCCCC--CCCCCcccccCCCCc
Q 040733 257 DELALRQTLKLIVE------SKNPVLCVGGGCL-NSSEELRKFVGL-TGIPVTCTTMGLGLFP--CTDELCLRMVGMFGT 326 (643)
Q Consensus 257 ~~~~i~~~~~~L~~------AkrPvIl~G~g~~-~~~~~l~~lae~-lg~PV~tt~~gkg~~~--~~hpl~lG~~g~~~~ 326 (643)
-+++++.+++.|++ .++..++.|.+.. .....+.+|++. +|.+-+.+.......+ ..+....|.. ..+.
T Consensus 70 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~ 148 (671)
T TIGR01591 70 WDEAISYIAEKLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIG-AMSN 148 (671)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCC-CCCC
Confidence 46778888888873 3456667766544 344567889986 8887554321100000 0011112211 1111
Q ss_pred HHHHHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCcccccC
Q 040733 327 VYANYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSNEIGK 375 (643)
Q Consensus 327 ~~~~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~~i~~ 375 (643)
. .+-++++|+||++|+....... ..+. .....+|+|.||+.......
T Consensus 149 ~--~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~ 199 (671)
T TIGR01591 149 T--ISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAK 199 (671)
T ss_pred C--HHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhH
Confidence 1 1347889999999998643211 1111 12246799999987776544
|
This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related. |
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.75 E-value=1.1 Score=51.09 Aligned_cols=107 Identities=23% Similarity=0.238 Sum_probs=76.4
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.|+++-=| |+...+..+.+|.+.+.|+++|.-.-..... + ..
T Consensus 50 A~~~Adgyar~s-g~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~---------~----~~-------- 107 (548)
T PRK08978 50 AAMAAIGYARAT-GKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLI---------G----TD-------- 107 (548)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------C----CC--------
Confidence 566788888776 56777776555 4444689999999999999988853322110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++...+++|+. ..||+.||++.|-.
T Consensus 108 ~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (548)
T PRK08978 108 AFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDIQ 162 (548)
T ss_pred CCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhhh
Confidence 023457778888887788999999988888877764 35899999998753
|
|
| >cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1) | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.6 Score=47.23 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhCC--CcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhh
Q 040733 257 DELALRQTLKLIVESK--NPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak--rPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l 333 (643)
-+++++.+++.|++.+ +..++.|.... +....+.+|++.+|.+.+............... .|. +..+.. ..-+
T Consensus 71 WdeAl~~ia~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~--~~di 146 (386)
T cd02768 71 WEEALKTVAEGLKAVKGDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRL-RGN-YLFNTS--IAEI 146 (386)
T ss_pred HHHHHHHHHHHHHhcChhheEEEecCCCCHHHHHHHHHHHHHhCCCCchhhhccccCcccccc-ccC-cccCCC--HHHH
Confidence 5788999999999887 56666666443 444568899999998765331110000000000 011 111111 2346
Q ss_pred hcCCEEEEecCccCcccc---Cccc-cccC-CceEEEEcCCcccc
Q 040733 334 NECDLLLAAGVRFNERMT---SKLE-DFAT-RAKIVHIDIDSNEI 373 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t---~~~~-~~~~-~~~iI~Id~d~~~i 373 (643)
+++|+||++|..+.+... ..+. .... .+++|.||+...+.
T Consensus 147 ~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~ 191 (386)
T cd02768 147 EEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL 191 (386)
T ss_pred hhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc
Confidence 799999999988643211 1111 1122 67999999877665
|
The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun |
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.73 E-value=1.5 Score=50.33 Aligned_cols=154 Identities=13% Similarity=0.106 Sum_probs=91.5
Q ss_pred CcHHHHHHHHHHHCC--CCEEEEccCC-C-cHHHHHHHhhC-CCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchh
Q 040733 70 RKGADIIVEALERQG--VTTVFAYPGG-A-SIEIHQSLTRS-NIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPG 143 (643)
Q Consensus 70 ~~~a~~lv~~L~~~G--V~~vFg~PG~-~-~~~l~~al~~~-~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG 143 (643)
++..+++.++|.+.. -..++++-++ . ...+ ..|.+. +=|++ ...-|++.+.+|.|.|...-+|-+ .|..+=
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~-~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~--~~f~~F 355 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGL-VKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPVV--AIYSTF 355 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCH-HHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCeeEE--EeeHHH
Confidence 456677777776653 2345543222 1 1112 223221 22333 567899999999999984433333 334443
Q ss_pred hHHHHHHHHH-hhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCe
Q 040733 144 VTNIMTGLMD-AYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 144 ~~N~~~gl~~-A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GP 221 (643)
+.-++.-+.. +...+.||+++..........-..+|.+.+..+++.+..+. +...++.++..+++.|+. ..+||
T Consensus 356 ~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~----~~~~P 431 (580)
T PRK05444 356 LQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALA----YDDGP 431 (580)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----CCCCc
Confidence 3344554433 56789999999643332111122478888889999987654 345666677666666654 23599
Q ss_pred EEEEcccch
Q 040733 222 VLIDIPVDV 230 (643)
Q Consensus 222 V~i~iP~Dv 230 (643)
|||.++...
T Consensus 432 ~~ir~~r~~ 440 (580)
T PRK05444 432 IAIRYPRGN 440 (580)
T ss_pred EEEEecCCC
Confidence 999999764
|
|
| >PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.6 Score=47.90 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=49.2
Q ss_pred HHHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
.+.+.++++|++|++|+++.-.....+... ...+++|.|+.++..++. ...++.|.+++.+++. +.+.|..
T Consensus 192 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~-~~~d~~i~~~~~~~~~-~~~~~~~ 264 (271)
T PTZ00409 192 QAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITN-RISDYHVRAKFSELAQ-ISDILKG 264 (271)
T ss_pred HHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCC-ccccEEEECcHHHHHH-HHHHhcc
Confidence 445678899999999999864433333222 245789999998876542 2468999999999885 4445443
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.88 Score=52.14 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=75.5
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.++++ .--|+...++.+.+|...+.|+++|.-.-..... + ..
T Consensus 54 A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~~~---------~----~~-------- 111 (574)
T PRK06882 54 AVHMADGYARST-GKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLI---------G----TD-------- 111 (574)
T ss_pred HHHHHHHHHHhh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc---------C----CC--------
Confidence 456777777766 45655554 3445666689999999999999888753321100 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++...+++|+. ..||+.|+|+.|-
T Consensus 112 ~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 112 AFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM 165 (574)
T ss_pred cccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHH
Confidence 123468889999988889999999988877777764 4699999999873
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.2 Score=51.19 Aligned_cols=106 Identities=20% Similarity=0.159 Sum_probs=76.7
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.++++- --|+...++.+.+|...+.|+++|.-.-.... .+. .
T Consensus 50 A~~~Adgyar~t-g~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~------------------~~~---~ 107 (586)
T PRK06276 50 AAHAADGYARAS-GKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKL------------------IGN---D 107 (586)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCccc------------------cCC---C
Confidence 667888888776 456666554 44666678999999999999998874222100 000 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-...+++++++++...+++|+. ..||+.|+|+.|-
T Consensus 108 ~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 108 AFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred CCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 123468889999999899999999998888888775 3689999999763
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.4 Score=50.08 Aligned_cols=107 Identities=18% Similarity=0.091 Sum_probs=75.9
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.++++ .--|+...++.|.+|...+.|+++|.-+-.. . .... +
T Consensus 54 A~~~AdGyar~t-g~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~-~-------------~~~~--~----- 111 (542)
T PRK05858 54 AAFAAEAWAKLT-RVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPA-L-------------RWGM--G----- 111 (542)
T ss_pred HHHHHHHHHHhc-CCCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCc-c-------------cCCC--C-----
Confidence 567888888876 45666554 4456666789999999999998877632211 0 0000 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....++++++++.+.+++|+. ..||+.|+++.|-.
T Consensus 112 ~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 166 (542)
T PRK05858 112 SLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHA 166 (542)
T ss_pred CCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhhh
Confidence 023467788899988899999999998888887763 36899999997753
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=90.65 E-value=1.2 Score=51.03 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=76.1
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++-|+++- --|++..++.+.+|...+.|+++|.-.-.... .+ ..
T Consensus 54 A~~mAdgyar~t-g~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~---------~~----~~-------- 111 (572)
T PRK08979 54 AVHMADGYARAT-GKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNL---------IG----ND-------- 111 (572)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccc---------cC----CC--------
Confidence 566778887776 456555553 33566678999999999999988885322110 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++.+.+++|+. ..||+.|+++.|-
T Consensus 112 ~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 112 AFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred CCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 124468889999988889999999999888888774 4589999999874
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.76 Score=52.78 Aligned_cols=117 Identities=17% Similarity=0.105 Sum_probs=81.1
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|-|.+.+. +++.+|++-=| |....++.+.+|...+.|+++|.-.-....+ +
T Consensus 52 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~---------~ 118 (585)
T PLN02470 52 IRNVLCRHEQ---GEVFAAEGYAKAS-GKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMI---------G 118 (585)
T ss_pred ceEEEeccHH---HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhc---------C
Confidence 4555543322 2566788887776 46666665444 4444589999999999999998754332110 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.. .....|...+++.+-...++|++++++.+.+++|+. .+||+.||++.|-
T Consensus 119 ----~~--------~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 119 ----TD--------AFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred ----CC--------cCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCch
Confidence 00 124467888999988889999999999888888764 3699999999874
|
|
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.97 Score=47.03 Aligned_cols=107 Identities=23% Similarity=0.169 Sum_probs=69.2
Q ss_pred HHHHHHHHHh---CCcEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCCC---CCCccCHHHHhhccc
Q 040733 121 FAAEGYARSS---GTPGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGTD---AFQEIPVVEVTRYMT 191 (643)
Q Consensus 121 ~~A~Gyar~s---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~~---~~Q~~d~~~~~~~~t 191 (643)
-+|.|.+.+. +.-.++++..|=|.++. .-++..|...++|+|+|.-+.... +... .....|...+.+.+-
T Consensus 111 p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~-i~~~~~~~~~~~~~~~~a~a~G 189 (293)
T cd02000 111 PLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYA-ISTPTSRQTAGTSIADRAAAYG 189 (293)
T ss_pred hHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCee-ccCCHHHHhCCccHHHHHHhCC
Confidence 3445554443 33356666678877764 367888999999999998754321 1111 011235566666665
Q ss_pred eeeeEeC--CcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 192 KHNYLVL--DVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 192 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
-....|. +++++...+++|++.+..+. ||+.|++-.+
T Consensus 190 ~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~-~P~lIev~~~ 228 (293)
T cd02000 190 IPGIRVDGNDVLAVYEAAKEAVERARAGG-GPTLIEAVTY 228 (293)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEEEe
Confidence 5566675 34578888999998888764 8999998654
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.98 Score=52.23 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=76.1
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++.|+++- --|+...++.|.+|...+.|+++|.-+-....+ + ..
T Consensus 72 Aa~aA~gyar~t-gk~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~---------~----~~-------- 129 (616)
T PRK07418 72 AAHAADGYARAT-GKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAI---------G----TD-------- 129 (616)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCcccc---------C----CC--------
Confidence 566777777666 466666654 446666799999999999999999864221110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++...+++|+. ..||+.|+++.|-.
T Consensus 130 ~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 184 (616)
T PRK07418 130 AFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDVG 184 (616)
T ss_pred CcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhhh
Confidence 023467788888888788899999998888887764 35999999997643
|
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.5 Score=50.75 Aligned_cols=148 Identities=15% Similarity=0.188 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHHCC--CCEEEEc----cCCCcHHHHHHHhh-CCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 040733 71 KGADIIVEALERQG--VTTVFAY----PGGASIEIHQSLTR-SNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142 (643)
Q Consensus 71 ~~a~~lv~~L~~~G--V~~vFg~----PG~~~~~l~~al~~-~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~Gp 142 (643)
+..+++.+.|.+.. -..|+++ +|+... +.|.+ .+=|++ ...-|++++.+|.|.|...-+|-|. |..+
T Consensus 320 ~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~---~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~--~f~~ 394 (641)
T PRK12571 320 SYTSVFGEELTKEAAEDSDIVAITAAMPLGTGL---DKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA--VYST 394 (641)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCh---HHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEEE--ehHH
Confidence 55667777776554 2345555 333221 33433 222444 5678999999999999843344443 3555
Q ss_pred hhHHHHHHH-HHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCC
Q 040733 143 GVTNIMTGL-MDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGR 218 (643)
Q Consensus 143 G~~N~~~gl-~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~ 218 (643)
=..-++..| .++...+.||+++.-.... .|. ..+|.+.+..+++.+.-+.. ...++.++..+++.|++. .
T Consensus 395 Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~--~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~----~ 468 (641)
T PRK12571 395 FLQRGYDQLLHDVALQNLPVRFVLDRAGL--VGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAH----D 468 (641)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEECCCc--CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC----C
Confidence 445677776 4477899999988621111 132 24788888899999875443 455666777777666542 3
Q ss_pred CCeEEEEcccc
Q 040733 219 PGPVLIDIPVD 229 (643)
Q Consensus 219 ~GPV~i~iP~D 229 (643)
.|||+|.+|..
T Consensus 469 ~~P~~ir~~r~ 479 (641)
T PRK12571 469 DGPIAVRFPRG 479 (641)
T ss_pred CCcEEEEEecC
Confidence 59999999975
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.7 Score=50.21 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=91.6
Q ss_pred CcHHHHHHHHHHHCCC--CEEEEc----cCC-CcHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 040733 70 RKGADIIVEALERQGV--TTVFAY----PGG-ASIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV--~~vFg~----PG~-~~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~G 141 (643)
.+..+++.++|.+..- +.|+.+ +++ ....|.+.+ +=|++ ...-|++++.+|.|.|...-+|-|+ +..
T Consensus 310 ~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~f---P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~--~~a 384 (617)
T TIGR00204 310 PSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKF---PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVA--IYS 384 (617)
T ss_pred ccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHC---ccccccCCccHHHHHHHHHHHHHCCCEEEEE--ecH
Confidence 3456677777666543 345553 322 222333332 22444 5678999999999999854444433 355
Q ss_pred hhhHHHHHHH-HHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceee-eEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 142 PGVTNIMTGL-MDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 142 pG~~N~~~gl-~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
+=+.-++.-| .++...+.||+++..........-..+|.+....+++.+.-.. +...++.++..+++.|++ ..+
T Consensus 385 ~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~----~~~ 460 (617)
T TIGR00204 385 TFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYH----YDD 460 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHh----CCC
Confidence 4444444444 3456678999988543322111122477777788999887644 345677777777777664 235
Q ss_pred CeEEEEcccc
Q 040733 220 GPVLIDIPVD 229 (643)
Q Consensus 220 GPV~i~iP~D 229 (643)
|||+|..|..
T Consensus 461 ~Pv~ir~~r~ 470 (617)
T TIGR00204 461 GPIAVRYPRG 470 (617)
T ss_pred CCEEEEEccC
Confidence 8999999975
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.76 Score=52.40 Aligned_cols=109 Identities=19% Similarity=0.152 Sum_probs=77.2
Q ss_pred chHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.++ +++-||+ +.--|++..++.+.+|...+.|+++|.-.-..... ... ..
T Consensus 52 A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~-------~~~----~~-------- 111 (554)
T TIGR03254 52 AGYAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIV-------DLQ----QG-------- 111 (554)
T ss_pred HHHHHHHHHHHh-CCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCcccc-------ccC----CC--------
Confidence 556777777776 4555554 44556777799999999999999999865432100 000 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-...++|++++++.+.+++|+. .+||+.|+++.|-.
T Consensus 112 ~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~ 166 (554)
T TIGR03254 112 DYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVL 166 (554)
T ss_pred CcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHHh
Confidence 023468889999999999999999998888777763 45889999997743
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=3.6 Score=42.36 Aligned_cols=146 Identities=18% Similarity=0.100 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHCCC---CEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHH
Q 040733 72 GADIIVEALERQGV---TTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 72 ~a~~lv~~L~~~GV---~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~ 147 (643)
.-.+|-+.|.+.|+ +.++...-+.+. ..-...+ .......| ..|.-+|.|...+. .++.|+++-=|-++.-.
T Consensus 18 il~al~~al~~l~~~~~~~ivvsdiGc~~-~~~~~~~--~~~~~~~~-G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ig 93 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVVSGIGCSS-NLPEFLN--TYGIHGIH-GRVLPIATGVKWANPKLTVIGYGGDGDGYGIG 93 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCchhh-hhhhhcc--CCCccccc-ccHHHHHHHHHHHCCCCcEEEEECChHHHHcc
Confidence 44677888888875 345554444443 2211111 33445666 66678899999887 45655555444457788
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccc-----------cCCC----CC----CccCHHHHhhccce-eeeEe--CCcCcHHH
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKL-----------LGTD----AF----QEIPVVEVTRYMTK-HNYLV--LDVDDIPR 205 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~-----------~g~~----~~----Q~~d~~~~~~~~tk-~~~~v--~~~~~i~~ 205 (643)
++.|..|...++|+++|.-+..... .|.. .+ ...|...+.+.+-- +..+. .+++++.+
T Consensus 94 ~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~ 173 (279)
T PRK11866 94 LGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKE 173 (279)
T ss_pred HHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHH
Confidence 8999999999999999874332110 0000 00 01366677665422 22222 45566666
Q ss_pred HHHHHHHHhhcCCCCeEEEEc
Q 040733 206 IIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 206 ~l~~A~~~A~s~~~GPV~i~i 226 (643)
.|++|+ . .+||.+|++
T Consensus 174 ~l~~Al----~-~~Gps~I~v 189 (279)
T PRK11866 174 IIKEAI----K-HKGFSFIDV 189 (279)
T ss_pred HHHHHH----h-CCCCEEEEE
Confidence 666655 3 359999987
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=90.37 E-value=1.5 Score=50.20 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=75.4
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.|+++-=|-...| +..|.+|.+.++|+++|.-.=.... .+ ..
T Consensus 61 A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~---------~~----~~-------- 118 (578)
T PRK06112 61 GGAMADGYARVS-GKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQ---------TD----RN-------- 118 (578)
T ss_pred HHHHHHHHHHHh-CCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccc---------CC----CC--------
Confidence 556777888776 5777777754443333 7889999999999999884322110 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|-..+.+.+-....++++++++...+++|+. ..||+.|+++.|-
T Consensus 119 ~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv 172 (578)
T PRK06112 119 AFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADL 172 (578)
T ss_pred CccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhH
Confidence 023468888999999889999999888877777663 3589999999873
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=90.33 E-value=1.1 Score=51.24 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=79.3
Q ss_pred CeEEecC---ChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHH---HHHHHhhhCCCCEEEEeCCCccccc-------
Q 040733 108 IRSILPR---HEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIM---TGLMDAYSDSIPILAITGQVSQKLL------- 173 (643)
Q Consensus 108 i~~i~~~---hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~---~gl~~A~~~~vPvlvItg~~~~~~~------- 173 (643)
-+++... .=..+.-+|.|++.+. +++.||++ |=|..+.- ..+..|...+.|+++|.-+......
T Consensus 421 ~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~--GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~ 498 (569)
T PRK08327 421 GSYFGDGSAGGLGWALGAALGAKLATPDRLVIATV--GDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLE 498 (569)
T ss_pred CCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEe--cCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhh
Confidence 4455433 2333456778877765 57766664 44444332 3577888899999999876542110
Q ss_pred --CC------C-----CC-CccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 174 --GT------D-----AF-QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 174 --g~------~-----~~-Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+. + .+ ...|...+.+.+--+.+++.+++++...+++|+....++ .||+.|++..|
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~-~gp~liev~v~ 567 (569)
T PRK08327 499 VYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKG-RRSAVLDVIVD 567 (569)
T ss_pred hCcccccccccccccccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcC-CCcEEEEEEcc
Confidence 00 0 11 335777888887778889999999999999998776554 48999999865
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.5 Score=50.28 Aligned_cols=107 Identities=17% Similarity=0.064 Sum_probs=77.1
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++.||++- --|+.-.++.+.+|...+.|+++|.-.-..... + ..
T Consensus 55 A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~---------~----~~-------- 112 (572)
T PRK06456 55 AAHAADGYARAS-GVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVM---------G----KM-------- 112 (572)
T ss_pred HHHHHHHHHHhh-CCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCcccc---------C----CC--------
Confidence 566778877776 567777643 345555689999999999999998753321100 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....++++++++.+.+++|+. ..||+.|+++.|-.
T Consensus 113 ~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 167 (572)
T PRK06456 113 AFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIF 167 (572)
T ss_pred CccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhHh
Confidence 023468888999998899999999998888888764 46999999997753
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.6 Score=49.79 Aligned_cols=106 Identities=10% Similarity=0.007 Sum_probs=76.0
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.+|++-=| |+...+..|.+|...+.|+++|.-.=.... .+ ..
T Consensus 58 A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~---------~~----~~-------- 115 (557)
T PRK08199 58 AAMMAEAYGKLT-GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDF---------RE----RE-------- 115 (557)
T ss_pred HHHHHHHHHHhc-CCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCcccc---------CC----CC--------
Confidence 567788888776 56777776544 445568999999999999988874321100 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+=...++|++++++...+++|+. .+||+.|+++.|-
T Consensus 116 ~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl 169 (557)
T PRK08199 116 AFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDV 169 (557)
T ss_pred cccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 023468888888888888999999998888877764 3589999999764
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=1.6 Score=49.43 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=75.6
Q ss_pred chHHHHHHHHhCCCCeEEE-EecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVD-IDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~-i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+| ++.--|+...+..|.+|...+.|+++|+-..... ..+ ..
T Consensus 55 A~~mAdgYaR~t-g~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~---------~~~----~~-------- 112 (518)
T PRK12474 55 VTGAADGYGRIA-GKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVE---------HLQ----YD-------- 112 (518)
T ss_pred HHHHHHHHHHHh-CCCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchh---------hcC----CC--------
Confidence 455677777665 455554 4444556667889999999999999998643210 000 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+++.+-....+|++++++...|++|+. ..||++|+++.|-.
T Consensus 113 ~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~ 167 (518)
T PRK12474 113 APLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVA 167 (518)
T ss_pred CccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhh
Confidence 013358889999888888899999999988888773 45899999998853
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=2 Score=49.24 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=90.4
Q ss_pred CcHHHHHHHHHHHCCCC--EEEEc----cCCCcHHHHHHHhh-CCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 040733 70 RKGADIIVEALERQGVT--TVFAY----PGGASIEIHQSLTR-SNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~--~vFg~----PG~~~~~l~~al~~-~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~G 141 (643)
++..+++.+.|.+..-+ .++.+ +|... + +.|.+ .+=|++ ...-|++++.+|.|.|...-+|-| .+..
T Consensus 278 ~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~--~-~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv--~~fs 352 (581)
T PRK12315 278 ESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFG--L-KEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVI--FVNS 352 (581)
T ss_pred cCHHHHHHHHHHHHhccCCCEEEEeCccccccC--c-HHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEE--EeeH
Confidence 35566666666665433 34444 33322 2 33332 233444 567899999999999985445444 3333
Q ss_pred hhhHHHHHHH-HHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 142 PGVTNIMTGL-MDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 142 pG~~N~~~gl-~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
+=+.-++--| .++...+.||+++........ +-..+|.+.+..+++.+..... ...++.++..+++.|+. ...
T Consensus 353 ~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~----~~~ 427 (581)
T PRK12315 353 TFLQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALT----QHE 427 (581)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCC
Confidence 3233444422 234567899999865322222 2235788888899999886554 34566666666666553 235
Q ss_pred CeEEEEcccch
Q 040733 220 GPVLIDIPVDV 230 (643)
Q Consensus 220 GPV~i~iP~Dv 230 (643)
|||+|.+|...
T Consensus 428 gP~~ir~~r~~ 438 (581)
T PRK12315 428 HPVAIRVPEHG 438 (581)
T ss_pred CcEEEEEcCCc
Confidence 99999998753
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=90.22 E-value=1.5 Score=50.13 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=75.8
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+|++ .-.|+...++.|.+|...+.|+++|.-.-.... .+.. ..
T Consensus 59 A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~---------~~~~--~~-------- 118 (569)
T PRK09259 59 AGNAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREI---------VDLQ--QG-------- 118 (569)
T ss_pred HHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCccc---------cccc--CC--------
Confidence 455666766665 45555554 455666779999999999999999986432100 0000 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-...++|++++++...+++|+. .+||+.|+++.|-
T Consensus 119 ~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 119 DYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV 172 (569)
T ss_pred CccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence 123468888999988899999999998887777664 4689999999764
|
|
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=90.14 E-value=2.7 Score=42.23 Aligned_cols=92 Identities=18% Similarity=0.084 Sum_probs=58.6
Q ss_pred CCcEEEEEccchhh--HHHHHHHHHhhhCCCCEEEEeCCCccccc-----------CCC-------------CCCccCHH
Q 040733 131 GTPGVCLVSSGPGV--TNIMTGLMDAYSDSIPILAITGQVSQKLL-----------GTD-------------AFQEIPVV 184 (643)
Q Consensus 131 g~~gv~~~t~GpG~--~N~~~gl~~A~~~~vPvlvItg~~~~~~~-----------g~~-------------~~Q~~d~~ 184 (643)
.++.||++ |=|. .-.+..|..|...++|+++|.-+....-. +.. .....|..
T Consensus 80 ~r~VV~i~--GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~ 157 (235)
T cd03376 80 DITVVAFA--GDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLP 157 (235)
T ss_pred CCeEEEEE--cCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHH
Confidence 46666554 4444 24468899999999999999865442210 000 00124677
Q ss_pred HHhhccc-eee--eEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 185 EVTRYMT-KHN--YLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 185 ~~~~~~t-k~~--~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+.+.+- ++. .++.+++++.+.+++|+. .+||+.|++..+
T Consensus 158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~-----~~gP~lIev~~~ 200 (235)
T cd03376 158 LIMAAHNIPYVATASVAYPEDLYKKVKKALS-----IEGPAYIHILSP 200 (235)
T ss_pred HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh-----CCCCEEEEEECC
Confidence 7777763 232 457788888877777775 258999998655
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.12 E-value=1.7 Score=50.32 Aligned_cols=116 Identities=15% Similarity=0.024 Sum_probs=78.3
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-cCCCCCCccCHHHH
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-LGTDAFQEIPVVEV 186 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-~g~~~~Q~~d~~~~ 186 (643)
|++ ...-|++++.+|.|+|...+...+ +.|..+=+.-++..+..+...+.|++++........ ..-..+|.+.+..+
T Consensus 368 R~~d~GIaE~~~vg~A~GlA~~G~~~pv-~~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edia~ 446 (624)
T PRK05899 368 RYIHYGVREFAMAAIANGLALHGGFIPF-GGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQLAS 446 (624)
T ss_pred CeeeeChhHHHHHHHHHHHHHcCCCeEE-EEEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHHHH
Confidence 555 478999999999999987623233 334445455666677777778999999864333211 11224688888889
Q ss_pred hhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 187 TRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 187 ~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
++.+.... +...++.++..+++.|++. .++||||.+|..
T Consensus 447 ~r~iP~~~V~~P~d~~e~~~~l~~a~~~----~~~P~~ir~~r~ 486 (624)
T PRK05899 447 LRAIPNLTVIRPADANETAAAWKYALER----KDGPSALVLTRQ 486 (624)
T ss_pred HHhCCCcEEEeCCCHHHHHHHHHHHHHc----CCCCEEEEEeCC
Confidence 99887544 3456667777777777652 258999999863
|
|
| >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.44 Score=53.75 Aligned_cols=88 Identities=24% Similarity=0.337 Sum_probs=58.7
Q ss_pred cccccchHHHHHHHHhCCCCeEEEEecCc-c----ccCCHHH--HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccc
Q 040733 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDG-S----FIMNLQE--LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANR 556 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p~~~Vv~i~GDG-s----f~m~~~e--L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~ 556 (643)
|-+||++.-|.||++-+|+..++|++||| + ..++... ++...+-+.=+-|+++| ||.|..
T Consensus 153 GeLGy~l~ha~gAa~d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lN--GykI~n----------- 219 (793)
T COG3957 153 GELGYALSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLN--GYKIEN----------- 219 (793)
T ss_pred cchhHHHHHHHHhhcCCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEec--ceeccC-----------
Confidence 67999999999999999999999999999 2 2233332 34444444334455554 454421
Q ss_pred cccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCC
Q 040733 557 ANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590 (643)
Q Consensus 557 ~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~ 590 (643)
.+.++. ...-++.++-++||.+-+.|+.
T Consensus 220 -pT~lar-----~s~~el~~~f~G~Gy~p~~veg 247 (793)
T COG3957 220 -PTVLAR-----ISDEELKALFEGYGYEPVFVEG 247 (793)
T ss_pred -ceeeee-----cChHHHHHHHhhCCCceeEecC
Confidence 111111 2345789999999998888876
|
|
| >cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons | Back alignment and domain information |
|---|
Probab=90.06 E-value=2.5 Score=47.65 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCch-hhHHHHHHHHHHhCC-ceeecCCCCCCCCCCCCCcccc---cCCCC
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCL-NSSEELRKFVGLTGI-PVTCTTMGLGLFPCTDELCLRM---VGMFG 325 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~-~~~~~l~~lae~lg~-PV~tt~~gkg~~~~~hpl~lG~---~g~~~ 325 (643)
-+++++.+++.|++. ++..++.|.+.. .....+.+|++..+. +.+.. .+. + ...+...+. +|...
T Consensus 71 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~g~s~~~~~-~~~--~-c~~~~~~~~~~~~G~~~ 146 (512)
T cd02753 71 WDEALSLVASRLKEIKDKYGPDAIAFFGSAKCTNEENYLFQKLARAVGGTNNVDH-CAR--L-CHSPTVAGLAETLGSGA 146 (512)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcHHHHHHHHHHHHhcCCCccCC-Ccc--c-ccchhhHHHHhhcCCCC
Confidence 467888888888753 456666666554 334567788887765 33321 111 0 011111111 12100
Q ss_pred cHHHHHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCcccccCCCCCCeeEe----cCHHHHHHHHHHH
Q 040733 326 TVYANYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLVFNRMNMI 397 (643)
Q Consensus 326 ~~~~~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~L~~L~~~ 397 (643)
.....+-+.++|+||++|+.+.+-.. ..+. .....+++|.||+....... .++..|. .|...++..+...
T Consensus 147 ~~~~~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~--~Ad~~l~i~PGtD~al~lal~~~l 224 (512)
T cd02753 147 MTNSIADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELAR--FADLHLQLRPGTDVALLNAMAHVI 224 (512)
T ss_pred CCCCHHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchH--hhCeeeCCCCCcHHHHHHHHHHHH
Confidence 00012346899999999998642211 1111 12245789999988876654 3444443 4555444433333
Q ss_pred H
Q 040733 398 L 398 (643)
Q Consensus 398 l 398 (643)
+
T Consensus 225 ~ 225 (512)
T cd02753 225 I 225 (512)
T ss_pred H
Confidence 3
|
It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins. |
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=89.99 E-value=1.6 Score=40.76 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=65.8
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKS 568 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~ 568 (643)
+..+|-|.+.+. ++|++++---++...+..|.++...+.|+++|+-+....+.-. . +. .
T Consensus 53 A~~~A~g~~r~~--~~v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~~~~~----------~-~~--------~ 111 (160)
T cd07034 53 AAEAAIGASAAG--ARAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGL----------P-KP--------D 111 (160)
T ss_pred HHHHHHHHHhhC--CcEEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCCCCCC----------C-Cc--------C
Confidence 667777877754 3355555555666678999999999999999997655322100 0 00 0
Q ss_pred CCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEE
Q 040733 569 EIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDV 612 (643)
Q Consensus 569 ~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV 612 (643)
....|...+.+. .....++++++|+.+.+++|+. .++|++|-+
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 112 QSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 122445555555 4667789999998887777663 357887753
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.67 Score=46.07 Aligned_cols=119 Identities=21% Similarity=0.312 Sum_probs=77.6
Q ss_pred HHHHhCCCc------EEEEcCCch---hhHHHHHHHHHHhCCceeecCCC--CCCCCCCCCCcccccCCCCcHHHHHhhh
Q 040733 266 KLIVESKNP------VLCVGGGCL---NSSEELRKFVGLTGIPVTCTTMG--LGLFPCTDELCLRMVGMFGTVYANYAVN 334 (643)
Q Consensus 266 ~~L~~AkrP------vIl~G~g~~---~~~~~l~~lae~lg~PV~tt~~g--kg~~~~~hpl~lG~~g~~~~~~~~~~l~ 334 (643)
+.|.++.|| +++.|+... +..+.|..||+++|+-|-.|-.+ -|.+| +.+-+|-.| . +-
T Consensus 205 ~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyvp--NdlQiGQTG---K------IV 273 (336)
T KOG3954|consen 205 QELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYVP--NDLQIGQTG---K------IV 273 (336)
T ss_pred hhcccccCCccccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcCC--Ccccccccc---c------ee
Confidence 456667777 677887555 34567899999999999877544 34444 344455433 2 34
Q ss_pred cCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 335 ECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 335 ~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
...|-|++|.+=.-. .+......+.|+.|+.||+..= ..-+|+.+++|+-.++.+|.+.|.
T Consensus 274 APeLYiAvGisGAIQ---HLAGmKDSKvIvAINkDpdAPI-FqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 274 APELYIAVGISGAIQ---HLAGMKDSKVIVAINKDPDAPI-FQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred ccceEEEEeccHHHH---HhhcCccceEEEEecCCCCCCc-eeeecccchhhHHHHhHHHHHhcc
Confidence 678899999763211 1111223445778888886421 123789999999999988887765
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.9 Score=51.88 Aligned_cols=106 Identities=20% Similarity=0.155 Sum_probs=75.5
Q ss_pred chHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++.++++- --|++..++.|.+|...+.|+++|.-.-.... .+ ..
T Consensus 57 A~~~Adgyar~t-g~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~---------~~----~~-------- 114 (561)
T PRK06048 57 AAHAADGYARAT-GKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSM---------IG----ND-------- 114 (561)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCccc---------cC----CC--------
Confidence 577888888776 466666554 34555668999999999999998874221100 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-...++|++++++...+++|+. .+||+.|+++.|-
T Consensus 115 ~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 115 AFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred CccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence 123468888888888788899999998888887765 4699999998764
|
|
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=89.80 E-value=2.7 Score=42.31 Aligned_cols=95 Identities=16% Similarity=0.043 Sum_probs=56.8
Q ss_pred CCcEEEEEccchhhH--HHHHHHHHhhhCCCCEEEEeCCCccc-ccC-CC-----------------CCCccCHHHHhhc
Q 040733 131 GTPGVCLVSSGPGVT--NIMTGLMDAYSDSIPILAITGQVSQK-LLG-TD-----------------AFQEIPVVEVTRY 189 (643)
Q Consensus 131 g~~gv~~~t~GpG~~--N~~~gl~~A~~~~vPvlvItg~~~~~-~~g-~~-----------------~~Q~~d~~~~~~~ 189 (643)
+|+.||++ |=|.. -.+..+.++...++||++|.-+.... +.+ +. .+...|...+.+.
T Consensus 87 ~~~Vv~i~--GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a 164 (237)
T cd02018 87 KKDVVVIG--GDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAAT 164 (237)
T ss_pred CCcEEEEe--CchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHH
Confidence 35555543 44432 24667777777999999998654421 111 00 1223577888887
Q ss_pred cceeeeE---eCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchh
Q 040733 190 MTKHNYL---VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 190 ~tk~~~~---v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~ 231 (643)
+--...+ +.+++++..+|++|+. ..+||++|++..|..
T Consensus 165 ~G~~~~~~~~v~~~~~l~~al~~al~----~~~GP~lI~v~i~c~ 205 (237)
T cd02018 165 HGCVYVARLSPALKKHFLKVVKEAIS----RTDGPTFIHAYTPCI 205 (237)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHHHh----cCCCCEEEEEeCCCC
Confidence 7544443 6666666666666653 235899999987643
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=1.7 Score=49.44 Aligned_cols=107 Identities=15% Similarity=0.047 Sum_probs=75.7
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+|++-=| |....+..+.+|...+.|+++|.-.-.... ...+
T Consensus 51 A~~mAdgyar~t-gkpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~~------------~~~~--------- 108 (549)
T PRK06457 51 AALAASVEAKIT-GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDM------------IGHD--------- 108 (549)
T ss_pred HHHHHHHHHHHh-CCCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCccc------------cCCC---------
Confidence 455777777776 56777665444 555568999999999999999886422100 0000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
.....|...+.+.+-....++++++++...+++|+. ..||+.|+++.|-.
T Consensus 109 ~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~ 162 (549)
T PRK06457 109 YFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISKRGVAHINLPVDIL 162 (549)
T ss_pred cccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHh
Confidence 124468888888888888999999988777777653 56999999998753
|
|
| >cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site | Back alignment and domain information |
|---|
Probab=89.73 E-value=3 Score=47.68 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhC--CCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCC--CCCCCcccccCCCCcHHHH
Q 040733 256 PDELALRQTLKLIVES--KNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFP--CTDELCLRMVGMFGTVYAN 330 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~A--krPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~--~~hpl~lG~~g~~~~~~~~ 330 (643)
.-+++++.+++.|++. ++.+++.++... +..-...+|+..+|.+-+.........+ ......+|.. .++.. .
T Consensus 82 SWDEAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~--~~t~~-~ 158 (574)
T cd02767 82 SWDEAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVG--KGTVS-L 158 (574)
T ss_pred cHHHHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCCC--CCCCC-H
Confidence 3577888888888876 345555544333 3444567899989876443211000000 0011112211 11111 2
Q ss_pred HhhhcCCEEEEecCccCccccC---ccc-cccCCceEEEEcCCcc
Q 040733 331 YAVNECDLLLAAGVRFNERMTS---KLE-DFATRAKIVHIDIDSN 371 (643)
Q Consensus 331 ~~l~~aDlvL~vG~~~~~~~t~---~~~-~~~~~~~iI~Id~d~~ 371 (643)
+-+.++|+||++|......... .+. .....+|+|.||+...
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 3467999999999986432211 111 1124679999998664
|
These members belong to the molybdopterin_binding (MopB) superfamily of proteins. |
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=22 Score=34.83 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=78.6
Q ss_pred EEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhh-HHHHHHHHHhhh-CCCCEEEE
Q 040733 88 VFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGV-TNIMTGLMDAYS-DSIPILAI 164 (643)
Q Consensus 88 vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~-~N~~~gl~~A~~-~~vPvlvI 164 (643)
++.=-|.....++..- ..+-+++..--=..+.-+|.|.+.+. +++.||++ |=|. .=.+..|..|.. ..+|+++|
T Consensus 32 iv~D~G~~~~~~~~~~-~~~~~~~~~GsMG~glpaAiGaalA~p~r~Vv~i~--GDG~f~m~~~eL~Ta~~~~~lpi~iv 108 (202)
T PRK06163 32 VIGGIGNTNFDLWAAG-QRPQNFYMLGSMGLAFPIALGVALAQPKRRVIALE--GDGSLLMQLGALGTIAALAPKNLTII 108 (202)
T ss_pred EEECCCccHHHHHHhh-cCCCCeEeecccccHHHHHHHHHHhCCCCeEEEEE--cchHHHHHHHHHHHHHHhcCCCeEEE
Confidence 4444454333344332 22223443222233445788887765 35555543 4443 334577888754 47898888
Q ss_pred eCCCcccc-cCC---CCCCccCHHHHhhcccee-eeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 165 TGQVSQKL-LGT---DAFQEIPVVEVTRYMTKH-NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 165 tg~~~~~~-~g~---~~~Q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.-+..... .+. ...+..|...+.+.+--. .+++.+.+++...+++|+. ..||+.|++..|
T Consensus 109 V~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~~~~~~v~~~~el~~al~~a~~-----~~~p~lIeV~i~ 173 (202)
T PRK06163 109 VMDNGVYQITGGQPTLTSQTVDVVAIARGAGLENSHWAADEAHFEALVDQALS-----GPGPSFIAVRID 173 (202)
T ss_pred EEcCCchhhcCCccCCCCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 86553221 111 112346777788777544 5689999988888888864 358999999876
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=89.62 E-value=1.6 Score=49.77 Aligned_cols=117 Identities=18% Similarity=0.141 Sum_probs=79.9
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|-|.+... +++.++++-=| |++..++.|..|...++|+++|.-.=..... +
T Consensus 40 i~~i~~~hE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~~~~---------~ 106 (558)
T TIGR00118 40 IEHILVRHEQ---GAAHAADGYARAS-GKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLI---------G 106 (558)
T ss_pred ceEEEeCcHH---HHHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc---------C
Confidence 4555443322 2456688887776 46666655433 4555689999999999999998853221100 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.. .....|...+++.+-....++++++++...+++|+. ..||+.|+++.|-
T Consensus 107 ----~~--------~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 107 ----SD--------AFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred ----CC--------CCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 00 123468888999998999999999998888887774 2589999999773
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=89.59 E-value=1.5 Score=48.14 Aligned_cols=93 Identities=22% Similarity=0.177 Sum_probs=60.9
Q ss_pred cEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCC-CCCC--ccCHHHHhhccceeeeEeCC--cCcHH
Q 040733 133 PGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGT-DAFQ--EIPVVEVTRYMTKHNYLVLD--VDDIP 204 (643)
Q Consensus 133 ~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~-~~~Q--~~d~~~~~~~~tk~~~~v~~--~~~i~ 204 (643)
..++++..|=|.+|- .-++.-|..-++|||++.-+... .++. ...| ..|.....+.+--...+|.. +..+.
T Consensus 223 ~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~y-aig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~ 301 (433)
T PLN02374 223 DDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVR 301 (433)
T ss_pred CCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCE-eecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHH
Confidence 456677788888773 33788888999999999965431 1221 0112 22455556665555566643 33566
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcc
Q 040733 205 RIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 205 ~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
+.+.+|++.|+.+. ||+.|++-
T Consensus 302 ~a~~~A~~~Ar~g~-gP~LIe~~ 323 (433)
T PLN02374 302 EVAKEAIERARRGE-GPTLVECE 323 (433)
T ss_pred HHHHHHHHHHHHcC-CCEEEEEE
Confidence 77789999998875 99999974
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=89.57 E-value=1.9 Score=49.36 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=74.6
Q ss_pred chHHHHHHHHhCCCCeEEEE-ecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDI-DGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i-~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+... +++.+++ +---|++..++.+.+|...+.|+++|.-.=... ..+ ..
T Consensus 53 A~~~Adgyar~t-g~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~---------~~~----~~-------- 110 (563)
T PRK08527 53 AVHAADGYARAS-GKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNS---------LIG----TD-------- 110 (563)
T ss_pred HHHHHHHHHhhh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcc---------ccC----CC--------
Confidence 566778877776 4555544 444466667899999999999988887421100 000 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|-..+++.+-....+|++++++..+|++|+. ..||+.|+++.|-
T Consensus 111 ~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv 164 (563)
T PRK08527 111 AFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV 164 (563)
T ss_pred CCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 124468888899888888899999999988888774 3589999999774
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=7.7 Score=44.42 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=92.4
Q ss_pred HHHHHHHC-CCCEEEEcc-CCCcHHHHHHHhhCC-CeEEecCCh---hHHHHHHHHHHHHh-CCcEEEEEccchhhHHHH
Q 040733 76 IVEALERQ-GVTTVFAYP-GGASIEIHQSLTRSN-IRSILPRHE---QGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 76 lv~~L~~~-GV~~vFg~P-G~~~~~l~~al~~~~-i~~i~~~hE---~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~ 148 (643)
+.+.|.+. .=+.++..- |+........+.-.. -+++....= ..+.-+|.|.+-+. +++.||++-= -++.-.+
T Consensus 364 ~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GD-Gsf~m~~ 442 (574)
T PRK09124 364 LARQISEFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGD-GGFSMLM 442 (574)
T ss_pred HHHHHHhhcCCCcEEEEcCCHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecC-cHHhccH
Confidence 45555443 223444444 433322222232222 556643321 12667888888776 4666665433 3555556
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccc--------cCC---C-CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKL--------LGT---D-AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~--------~g~---~-~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s 216 (643)
..|..|...++|+++|.-+..... .+. + .++..|...+.+.+-...+++.+++++...+++|+.
T Consensus 443 ~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~---- 518 (574)
T PRK09124 443 GDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVEKASELDGALQRAFA---- 518 (574)
T ss_pred HHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh----
Confidence 889999999999999986554211 011 0 134468888888888888999999999888888864
Q ss_pred CCCCeEEEEcccc
Q 040733 217 GRPGPVLIDIPVD 229 (643)
Q Consensus 217 ~~~GPV~i~iP~D 229 (643)
..||+.|++..|
T Consensus 519 -~~~p~lIev~i~ 530 (574)
T PRK09124 519 -HDGPALVDVVTA 530 (574)
T ss_pred -CCCCEEEEEEec
Confidence 358999999876
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=89.47 E-value=7.5 Score=44.66 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=75.3
Q ss_pred chHHHHHHHHhCCCCeEE-EEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVV-DIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv-~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+ +++.--|++..++.|.+|...+.|+++|.-.=.... .+ ..
T Consensus 71 A~~~AdgYar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~---------~~----~~-------- 128 (587)
T PRK06965 71 AVHAADGYARAT-GKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAA---------IG----QD-------- 128 (587)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccc---------cC----CC--------
Confidence 455888888776 34544 444555666779999999999999888874211100 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+.+.+-....+|++++++.+.+++|+. ..||+.|+++.|-
T Consensus 129 ~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 129 AFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred CcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 123468888999998899999999988777777663 3589999999874
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=89.32 E-value=7 Score=44.81 Aligned_cols=155 Identities=15% Similarity=0.185 Sum_probs=95.1
Q ss_pred CcHHHHHHHHHHH-CCCCEEEEcc-CCCcHHHHHHHhhCC-CeEEecCChhH----HHHHHHHHHHHh-CCcEEEEEccc
Q 040733 70 RKGADIIVEALER-QGVTTVFAYP-GGASIEIHQSLTRSN-IRSILPRHEQG----GIFAAEGYARSS-GTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~-~GV~~vFg~P-G~~~~~l~~al~~~~-i~~i~~~hE~~----A~~~A~Gyar~s-g~~gv~~~t~G 141 (643)
++..+ +++.|.+ ..=+.++..= |+........+.-.. -+++.. .-.+ +.-+|.|.+-+. +++.||++-=|
T Consensus 381 l~~~~-~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~-~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG 458 (579)
T TIGR03457 381 LHPRQ-VLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAP-MSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDG 458 (579)
T ss_pred cCHHH-HHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcC-CccccccchHHHHHhhhhhCCCCcEEEEEcch
Confidence 44444 3343433 3334555443 444344434443223 555533 2222 445788888776 46666665433
Q ss_pred hhhHHHHHHHHHhhhCCCCEEEEeCCCccccc---------CC----CCCCc-cCHHHHhhccceeeeEeCCcCcHHHHH
Q 040733 142 PGVTNIMTGLMDAYSDSIPILAITGQVSQKLL---------GT----DAFQE-IPVVEVTRYMTKHNYLVLDVDDIPRII 207 (643)
Q Consensus 142 pG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~---------g~----~~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l 207 (643)
|+.=....|..|...++|+++|.-+...... +. ..++. .|...+.+.+=-+.+++.+++++...|
T Consensus 459 -~f~m~~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~al 537 (579)
T TIGR03457 459 -AWGMSMNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVDKPEDVGPAL 537 (579)
T ss_pred -HHhccHHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHH
Confidence 3333458999999999999988865442210 10 01333 488888888877888999999999999
Q ss_pred HHHHHHhhcCCCCeEEEEcccc
Q 040733 208 KEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 208 ~~A~~~A~s~~~GPV~i~iP~D 229 (643)
++|++... ..+|+.|++..|
T Consensus 538 ~~a~~~~~--~~~p~lieV~v~ 557 (579)
T TIGR03457 538 KKAIAAQA--EGKTTVIEIVCT 557 (579)
T ss_pred HHHHhhCC--CCCcEEEEEEeC
Confidence 99886532 247999999876
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=8 Score=39.86 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHCCCC--EEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHH
Q 040733 71 KGADIIVEALERQGVT--TVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~--~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~ 147 (643)
..-.+|.++|.++|+. .+.-+.|......+....+ .......|-. +.-+|.|...+. +++.||++-=|-...+.
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~~--~~~~~~~mG~-alp~AiGaklA~pd~~VVai~GDG~~~~iG 94 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYIN--VNGFHTLHGR-AIPAATAVKATNPELTVIAEGGDGDMYAEG 94 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHcc--CCCCCccccc-HHHHHHHHHHHCCCCcEEEEECchHHhhCc
Confidence 4566888999998865 3344444222222222212 2223333444 446777877776 46666655444333344
Q ss_pred HHHHHHhhhCCCCEEEEeCCCccc-----------ccCC-------CCC-CccCHHHHhhccc-eeeeE--eCCcCcHHH
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQK-----------LLGT-------DAF-QEIPVVEVTRYMT-KHNYL--VLDVDDIPR 205 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~-----------~~g~-------~~~-Q~~d~~~~~~~~t-k~~~~--v~~~~~i~~ 205 (643)
+..|..|...++||++|.-+.... ..|. +.. ...|...+.+.+- ++..+ +.+++++.+
T Consensus 95 ~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~ 174 (280)
T PRK11869 95 GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKE 174 (280)
T ss_pred HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHH
Confidence 899999999999999997533211 0010 111 1246677776653 23332 556677777
Q ss_pred HHHHHHHHhhcCCCCeEEEEcc
Q 040733 206 IIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 206 ~l~~A~~~A~s~~~GPV~i~iP 227 (643)
.|++|+. .+||++|++-
T Consensus 175 ~i~~Al~-----~~Gp~lIeV~ 191 (280)
T PRK11869 175 ILKEAIK-----HKGLAIVDIF 191 (280)
T ss_pred HHHHHHh-----CCCCEEEEEE
Confidence 7777764 3599999873
|
|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.27 E-value=2.6 Score=44.88 Aligned_cols=93 Identities=23% Similarity=0.201 Sum_probs=62.4
Q ss_pred EEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCCC---CCCccCHHHHhhccceeeeEeCCcC--cHHH
Q 040733 134 GVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGTD---AFQEIPVVEVTRYMTKHNYLVLDVD--DIPR 205 (643)
Q Consensus 134 gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~~---~~Q~~d~~~~~~~~tk~~~~v~~~~--~i~~ 205 (643)
.++++..|=|.++- .-++..|..-++|+|+|.-+.... ++.. .....|.....+.+--...+|...+ .+..
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~-i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~ 236 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWA-IGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVRE 236 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCee-eecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHH
Confidence 56667778888873 335777888899999998654421 1110 1112456667777666677776554 3566
Q ss_pred HHHHHHHHhhcCCCCeEEEEccc
Q 040733 206 IIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 206 ~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
.+++|++.|+.+. ||+.|++-.
T Consensus 237 a~~~A~~~ar~~~-gP~lIev~t 258 (341)
T CHL00149 237 VAKEAVERARQGD-GPTLIEALT 258 (341)
T ss_pred HHHHHHHHHHhCC-CCEEEEEEE
Confidence 7889999988764 899999843
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=89.26 E-value=7.8 Score=44.69 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=90.6
Q ss_pred CcHHHHHHHHHHHCCCC--EEEE----ccCCCcHHHHHHHhh-CCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccc
Q 040733 70 RKGADIIVEALERQGVT--TVFA----YPGGASIEIHQSLTR-SNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~--~vFg----~PG~~~~~l~~al~~-~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~G 141 (643)
++..+++.++|.+..-+ .|+. ++|+..+ +.+.+ .+=|++ ...-|++++.+|.|.|...-||-|++ ..
T Consensus 357 ~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~---~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~--fs 431 (641)
T PLN02234 357 QSYTSCFVEALIAEAEADKDIVAIHAAMGGGTML---NLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTI--YS 431 (641)
T ss_pred CCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcch---HHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEe--hH
Confidence 46777777777766543 2333 3443333 33332 233444 56789999999999999666666654 44
Q ss_pred hhhHHHHHHH-HHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcC
Q 040733 142 PGVTNIMTGL-MDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 142 pG~~N~~~gl-~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
+=..-++.-| .++...+.||+++.- ... ..|. ..+|.+....+++.+..... ...++.++..+++.|+. .
T Consensus 432 ~Fl~RA~DQI~~dva~~~lpV~~v~~-~aG-~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~----~ 505 (641)
T PLN02234 432 SFMQRAYDQVVHDVDLQKLPVRFAID-RAG-LMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAA----I 505 (641)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEe-CCc-cCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----C
Confidence 3333444433 355678999987752 211 1232 24677777888888765333 34556666666655543 3
Q ss_pred CCCeEEEEcccch
Q 040733 218 RPGPVLIDIPVDV 230 (643)
Q Consensus 218 ~~GPV~i~iP~Dv 230 (643)
..+||+|..|...
T Consensus 506 ~~~Pv~ir~~R~~ 518 (641)
T PLN02234 506 DDRPSCFRYHRGN 518 (641)
T ss_pred CCCCEEEEeeccc
Confidence 4589999999753
|
|
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=89.09 E-value=1.7 Score=45.65 Aligned_cols=106 Identities=22% Similarity=0.218 Sum_probs=67.5
Q ss_pred HHHHHHHHh---CCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCC---CCCccCHHHHhhccce
Q 040733 122 AAEGYARSS---GTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTD---AFQEIPVVEVTRYMTK 192 (643)
Q Consensus 122 ~A~Gyar~s---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~---~~Q~~d~~~~~~~~tk 192 (643)
.|.|.+.+. +...++++..|=|.++ ...++.-|...+.|+|+|.-+... .+.+. .....|...+.+.+--
T Consensus 118 ~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~ 196 (315)
T TIGR03182 118 LATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGI 196 (315)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCC
Confidence 455555544 3345666667877776 234566778889999999876531 11111 1112355566666655
Q ss_pred eeeEeCC--cCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 193 HNYLVLD--VDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 193 ~~~~v~~--~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..++|.. +.++.+.+++|++.+..+. ||+.|++-..
T Consensus 197 ~~~~Vdg~d~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 234 (315)
T TIGR03182 197 PGERVDGMDVLAVREAAKEAVERARSGK-GPILLEMKTY 234 (315)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEeCC
Confidence 6667764 4567888999999888764 9999998654
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=88.98 E-value=2 Score=48.75 Aligned_cols=108 Identities=14% Similarity=0.027 Sum_probs=73.6
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++ .--|+...++.|.+|...+.|+++|.-.-. +... + ...
T Consensus 60 A~~~Adgyar~t-g~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~-~~~~--------~---~~~-------- 118 (530)
T PRK07092 60 VVGMADGYAQAT-GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQA-RSIL--------P---FEP-------- 118 (530)
T ss_pred HHHHHHHHHHHh-CCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCc-cccc--------C---ccc--------
Confidence 455888888877 46666655 334555668999999999999988774211 1000 0 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.....|...+.+.+-....++++++++.+.+++|+. ..||+.|+++.|-.
T Consensus 119 ~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~~ 173 (530)
T PRK07092 119 FLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDDW 173 (530)
T ss_pred hhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHHh
Confidence 012357778888887788899999998887777764 35899999997753
|
|
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.4 Score=45.93 Aligned_cols=101 Identities=26% Similarity=0.293 Sum_probs=64.6
Q ss_pred HHHHH---hCCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCC-CCC--ccCHHHHhhccceeee
Q 040733 125 GYARS---SGTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTD-AFQ--EIPVVEVTRYMTKHNY 195 (643)
Q Consensus 125 Gyar~---sg~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~~Q--~~d~~~~~~~~tk~~~ 195 (643)
|+|++ .|+..|+++..|=|+++ ..-+|--|...+.|||+|+-+.... +.+. .-| ..+..+..+.+--..+
T Consensus 112 G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~a-ist~~~~~~~~~~~~~~a~~~gip~~ 190 (300)
T PF00676_consen 112 GVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYA-ISTPTEEQTASPDIADRAKGYGIPGI 190 (300)
T ss_dssp HHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEE-TTEEHHHHCSSSTSGGGGGGTTSEEE
T ss_pred chhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcc-cccCccccccccchhhhhhccCCcEE
Confidence 66655 47788999999988876 5668888889999999998543211 0100 000 0111222333333344
Q ss_pred Ee--CCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 196 LV--LDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 196 ~v--~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
.| .++..+.+++++|++.++.++ |||.|++=
T Consensus 191 ~VDG~D~~av~~a~~~A~~~~R~g~-gP~lie~~ 223 (300)
T PF00676_consen 191 RVDGNDVEAVYEAAKEAVEYARAGK-GPVLIEAV 223 (300)
T ss_dssp EEETTSHHHHHHHHHHHHHHHHTTT---EEEEEE
T ss_pred EECCEeHHHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 44 577788899999999999887 99999873
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.89 E-value=1 Score=51.44 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=80.2
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....- ..+.-+|-|.+..+ +++-++++- --|++..++.|.+|...+.|+++|.-.-....+ +
T Consensus 49 i~~i~~rhE---~~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~---------~ 115 (566)
T PRK07282 49 IRHILARHE---QGALHEAEGYAKST-GKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGI---------G 115 (566)
T ss_pred ceEEEecCH---HHHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccC---------C
Confidence 455544332 22566777877766 455555543 334556689999999999999998864332211 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
.. .....|...+++.+-....+|++++++.+.+++|+. .+||+.|+++.|-.
T Consensus 116 ----~~--------~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 172 (566)
T PRK07282 116 ----KD--------AFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVS 172 (566)
T ss_pred ----CC--------CccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhhh
Confidence 00 023457788899888889999999988888877764 35899999998754
|
|
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=88.89 E-value=9.1 Score=36.60 Aligned_cols=103 Identities=13% Similarity=0.157 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhCCC-CEEEEeCCCcccc-cCC---CCCCccCHHHHhhccc
Q 040733 118 GGIFAAEGYARSSGTPGVCLVSSGPGVTN-IMTGLMDAYSDSI-PILAITGQVSQKL-LGT---DAFQEIPVVEVTRYMT 191 (643)
Q Consensus 118 ~A~~~A~Gyar~sg~~gv~~~t~GpG~~N-~~~gl~~A~~~~v-PvlvItg~~~~~~-~g~---~~~Q~~d~~~~~~~~t 191 (643)
.+.-+|.|.+.+..++.||+ .|=|... .+..+..|...+. |+++|.-+..... .+. ......|...+.+.+-
T Consensus 46 ~~lp~AiGaala~~~~vv~i--~GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~G 123 (179)
T cd03372 46 LASSIGLGLALAQPRKVIVI--DGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACG 123 (179)
T ss_pred hHHHHHHHHHhcCCCcEEEE--ECCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHcC
Confidence 34457777776655444444 4655554 2578888888875 6877764433221 111 1112357777777775
Q ss_pred eeeeEeC-CcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 192 KHNYLVL-DVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 192 k~~~~v~-~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
-....+. +++++.+.+++|+ .||..|++..|
T Consensus 124 ~~~~~v~~~~~el~~al~~a~-------~gp~lIev~~~ 155 (179)
T cd03372 124 LDNVATVASEEAFEKAVEQAL-------DGPSFIHVKIK 155 (179)
T ss_pred CCeEEecCCHHHHHHHHHHhc-------CCCEEEEEEEc
Confidence 5556676 6666665555554 48999999875
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=88.88 E-value=1.6 Score=49.57 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=73.5
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+..+ +++.+|++ ---|+...++.|.+|...+.|+++|.-.-.... .. ..
T Consensus 48 A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~---------~~----~~-------- 105 (539)
T TIGR02418 48 AAFMAQAVGRIT-GKPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRAD---------LL----KL-------- 105 (539)
T ss_pred HHHHHHHHHHHh-CCceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCcccc---------cc----cC--------
Confidence 455777777776 45555554 344555568999999999999999886422110 00 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
..+..|-..+++.+-....++++++++.+.+++|+. .+||+.|+++.|-
T Consensus 106 ~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 106 THQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred cccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 023467788888887788899999998877777663 3589999999884
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.7 Score=47.13 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHH---hCCceeec---CCCCCCCCCCCCCcc-cccC-----CC
Q 040733 259 LALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGL---TGIPVTCT---TMGLGLFPCTDELCL-RMVG-----MF 324 (643)
Q Consensus 259 ~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~---lg~PV~tt---~~gkg~~~~~hpl~l-G~~g-----~~ 324 (643)
...++++++|..|||.+|+-|+|-. .++.++++++|+ -|+-|=-- ..|| .|- |=+.+ --.+ ..
T Consensus 294 ~~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVAGR--MPG-HMNVLLAEA~VPYd~v~ 370 (462)
T PRK09444 294 TTAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGR--LPG-HMNVLLAEAKVPYDIVL 370 (462)
T ss_pred cCHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccccc--CCC-cceeEEeecCCCHHHHH
Confidence 4567788999999999999999865 455555555555 45555211 0111 111 11110 0000 00
Q ss_pred CcHHHHHhhhcCCEEEEecCc
Q 040733 325 GTVYANYAVNECDLLLAAGVR 345 (643)
Q Consensus 325 ~~~~~~~~l~~aDlvL~vG~~ 345 (643)
--...|.-+.+.|++|++|..
T Consensus 371 eMdeIN~~F~~tDvalVIGAN 391 (462)
T PRK09444 371 EMDEINDDFADTDTVLVIGAN 391 (462)
T ss_pred hHHhhccccccCCEEEEecCc
Confidence 113345567799999999976
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=88.67 E-value=1.5 Score=50.17 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=75.1
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.++++.=| |+...+..|.+|...+.|+++|.-.-..... +. .
T Consensus 63 A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~---------~~----~-------- 120 (564)
T PRK08155 63 AGFIAQGMARTT-GKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMI---------GT----D-------- 120 (564)
T ss_pred HHHHHHHHHHHc-CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccc---------cC----C--------
Confidence 566788888776 56766665433 4555689999999999999998753322100 00 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....++++++++...+++|+. .+||+.||++.|-
T Consensus 121 ~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 121 AFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDV 174 (564)
T ss_pred CccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 023467788888888888899999988887777664 3599999998764
|
|
| >cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.54 Score=47.98 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=43.6
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc--cccCCceEEEEcCCcccccCCCCCCeeEecCHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE--DFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVF 391 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~--~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L 391 (643)
+.+.+.+||++|++|+++.-.....+. ....++++|.|+.++..+++ .+++.+.+++.++|
T Consensus 198 a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d~--~a~~~i~~~~~~~l 260 (260)
T cd01409 198 AAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADH--LATLKVDARCGEVL 260 (260)
T ss_pred HHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCCc--cccEEEeCChhhhC
Confidence 456778999999999998644333322 12246789999999887664 46888888887654
|
Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. |
| >PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 | Back alignment and domain information |
|---|
Probab=88.53 E-value=2.2 Score=40.73 Aligned_cols=116 Identities=10% Similarity=0.126 Sum_probs=67.3
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccC-----CHHHHH-HHHHhCCCeEEEEEeCCCchhhHHH
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIM-----NLQELA-AIKAENIPVKILLINNQYLGMNVEY 547 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m-----~~~eL~-Ta~~~~lpv~ivV~NN~~~g~~~~~ 547 (643)
+.+++..+-. = -..++.|.|.+++.+ ...+...-=+.|+. +...+. -....++|+. |+..-+ ++.-
T Consensus 47 ~~r~i~~gIa-E-~~~vg~a~GlA~~G~-~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g-~~~~--- 118 (178)
T PF02779_consen 47 PGRFINTGIA-E-QNMVGMAAGLALAGG-LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAG-LGYG--- 118 (178)
T ss_dssp TTTEEE--S--H-HHHHHHHHHHHHHSS-SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEES-GGGS---
T ss_pred CceEEecCcc-h-hhccceeeeeeeccc-ccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecC-cccc---
Confidence 4467764321 1 115888889988863 13333333444555 222233 4567789988 554432 2210
Q ss_pred HHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHh--CCCcEEEEEE
Q 040733 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLE--TPGPYLLDVM 613 (643)
Q Consensus 548 q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~--~~gp~lIeV~ 613 (643)
.+ .. ..+..+...+-+++ |+..+...++.|++..++++++ .++|++|-..
T Consensus 119 -----~~--G~---------tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 119 -----GD--GG---------THHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp -----TT--GT---------TTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred -----cc--cc---------cccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 00 01 12345556666666 8888999999999999999999 6899988665
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B .... |
| >TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit | Back alignment and domain information |
|---|
Probab=88.41 E-value=4.4 Score=49.12 Aligned_cols=141 Identities=14% Similarity=0.035 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHh------CCCcEEEEcCCchh--hHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHH
Q 040733 257 DELALRQTLKLIVE------SKNPVLCVGGGCLN--SSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~------AkrPvIl~G~g~~~--~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~ 328 (643)
-+++++.+++.|.+ .+...++.|.+... ......+|+..+|.+........+.....++...|..+. +.
T Consensus 141 WdEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~~~-~~-- 217 (912)
T TIGR03479 141 WDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRFANLIGGVSPDIFDDYGDLYTGAFHTFGKAHD-SA-- 217 (912)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHHHHHcCCCccccccccCCCCCcccceeccCcc-CC--
Confidence 46778877777654 23333333544432 223456888888876432211111122223333333211 11
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc----cccCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHhh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE----DFATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILES 400 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~----~~~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~~ 400 (643)
...-+.+||+||++|+.........+. .....+|+|.||++.....+.-...+.|. .|...+|..+...+++
T Consensus 218 ~~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpirPGTD~ALalam~~vIi~e 295 (912)
T TIGR03479 218 TSDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRVGTDAALALGMVQVIIDE 295 (912)
T ss_pred chhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCCCCcHHHHHHHHHHHHHHc
Confidence 122367999999999986432211111 12245799999999887765333334444 5776666655555543
|
This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane. |
| >cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.8 Score=52.95 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhCC---------------Cc--EEEEcCCc-h-hhHHHHHHHHHHhCCceeecCCCCCCCCC---CC
Q 040733 257 DELALRQTLKLIVESK---------------NP--VLCVGGGC-L-NSSEELRKFVGLTGIPVTCTTMGLGLFPC---TD 314 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak---------------rP--vIl~G~g~-~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~---~h 314 (643)
-+++++.+++.|++.+ +| +.+.|++. . +..-.+.+|+..+|.+.+... ++-+... ..
T Consensus 73 WdeAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~~~tv~~l 151 (649)
T cd02752 73 WDEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUHSPTVAGL 151 (649)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhhhHHHHHH
Confidence 4678888888887643 33 44455433 2 344568899999998765432 2111000 00
Q ss_pred CCcccccCCCCcHHHHHhhhcCCEEEEecCccCcccc---Cccc-cccC-CceEEEEcCCcccccC
Q 040733 315 ELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT---SKLE-DFAT-RAKIVHIDIDSNEIGK 375 (643)
Q Consensus 315 pl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~-~~~iI~Id~d~~~i~~ 375 (643)
...+|. |..... -.-++++|+||++|+...+... ..+. .... .+|+|+||+.......
T Consensus 152 ~~~~G~-ga~tns--~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~ 214 (649)
T cd02752 152 ANTFGR-GAMTNS--WNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAA 214 (649)
T ss_pred HhhcCC-CCCCCC--HHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhH
Confidence 111121 111111 1236899999999998643221 1111 1122 5799999988876654
|
coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins. |
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=88.29 E-value=1.6 Score=50.00 Aligned_cols=107 Identities=18% Similarity=0.127 Sum_probs=73.2
Q ss_pred chHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+.+. +++.+|++ .--|+...++.+.+|...+.|+++|.-.-....+ + ..
T Consensus 50 A~~~Adgyar~t-gk~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~~~~-----------~--~~-------- 107 (575)
T TIGR02720 50 GALAAAADAKLT-GKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGM-----------N--MD-------- 107 (575)
T ss_pred HHHHHHHHHHhh-CCceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccC-----------C--CC--------
Confidence 455667777665 45656554 4446666789999999999999998864332110 0 00
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHH----HHhCCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL----MLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~----al~~~gp~lIeV~v~~~ 617 (643)
.....|-..+++.+-....+|.+++++...+++ |....||+.|+++.|-.
T Consensus 108 ~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 161 (575)
T TIGR02720 108 TFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFG 161 (575)
T ss_pred CcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchh
Confidence 123457788888888888899988776555555 44567999999998753
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=87.91 E-value=1.6 Score=48.05 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=75.4
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-.+ +.-+|-|.+.+. +++.+|++- -.|....++.|.+|...+.|+++|.-.-... ..+
T Consensus 39 i~~v~~~hE~~---A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~---------~~~ 105 (432)
T TIGR00173 39 LRVHVHIDERS---AGFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPE---------LRG 105 (432)
T ss_pred cEEEEecCCcc---HHHHHHHHHhcc-CCCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHH---------HhC
Confidence 45555433222 455777777766 456555554 4455666899999999999999987543210 000
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhH------H----HHHHHHHHh-CCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKD------V----RAAIQLMLE-TPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~e------L----~~al~~al~-~~gp~lIeV~v~~ 616 (643)
. . .....|...+.+.+-....+|+++++ + ++|++.+.. .+||+.|+|+.|-
T Consensus 106 ~---~---------~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 106 C---G---------ANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred C---C---------CCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 0 0 02346778888888888888888766 4 445555554 5699999999775
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=87.91 E-value=1.6 Score=50.16 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=74.7
Q ss_pred chHHHHHHHHhCCCCeEEEEecC-ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGD-GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GD-Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|-|.+..+ +++.++++-= -|+...++.|.+|...+.|+++|.-.=..+.+ +..
T Consensus 63 A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~------------------~~~--- 120 (585)
T CHL00099 63 AAHAADGYARST-GKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFI------------------GTD--- 120 (585)
T ss_pred HHHHHHHHHHhc-CCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc------------------CCC---
Confidence 566778887776 5666665543 35555689999999999999998854221110 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+++.+-....+|++++++.+.+++|+. .+||+.|+++.|-
T Consensus 121 ~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 121 AFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred CccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 023457777888887788899999999888888764 3589999999874
|
|
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=4.5 Score=44.84 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHH-HHHH--------HhCCCeEEEEEeCCCchh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQEL-AAIK--------AENIPVKILLINNQYLGM 543 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL-~Ta~--------~~~lpv~ivV~NN~~~g~ 543 (643)
|.+|+..+- +=...++.|.|++++. -|++|.+.. ..|.|- +.-| ..+. +.++|++++. -|+++..
T Consensus 188 p~R~id~gI--aEq~~vg~AaGlA~~G-~rPiv~~~~-~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g-~~G~~~~ 262 (464)
T PRK11892 188 ARRVIDTPI--TEHGFAGIGVGAAFAG-LKPIVEFMT-FNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRG-PNGAAAR 262 (464)
T ss_pred ccceeecCc--cHHHHHHHHHHHHhCC-CEEEEEEeh-HHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEe-cCCCCCC
Confidence 667776432 1122577788888763 355554321 112221 1122 2233 6789988764 3444221
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
.|. ++..++..+.+.+ |+..+.-.+..|++..|+.+++.++|++|
T Consensus 263 -----------------~G~-----hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~~~~Pv~i 308 (464)
T PRK11892 263 -----------------VAA-----QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPVIF 308 (464)
T ss_pred -----------------CCC-----ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHHhhCCCcEEE
Confidence 111 2445666776666 88888889999999999999998899986
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=3.2 Score=47.58 Aligned_cols=105 Identities=21% Similarity=0.326 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc--------cCCC----CCCccCHHH
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL--------LGTD----AFQEIPVVE 185 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~--------~g~~----~~Q~~d~~~ 185 (643)
+.-+|.|.+.+. +++.+|++-=| ++.-.+..+..|...++|+++|.-+..... .+.. .++..|...
T Consensus 413 ~~paAiGa~la~p~~~vv~i~GDG-sf~~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~ 491 (578)
T PRK06546 413 ALPHAIGAQLADPGRQVISMSGDG-GLSMLLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAA 491 (578)
T ss_pred hhHHHHHHHHhCCCCcEEEEEcCc-hHhhhHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHH
Confidence 344888888876 46666654333 333345789999999999999986443211 1100 135678888
Q ss_pred HhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 186 VTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 186 ~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+.+.+-...+++.+++++...+++|+. ..||+.|++..|
T Consensus 492 lA~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lIev~~~ 530 (578)
T PRK06546 492 IAAALGIHAVRVEDPKDVRGALREAFA-----HPGPALVDVVTD 530 (578)
T ss_pred HHHHCCCeeEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeC
Confidence 888887778899998888888888764 359999999775
|
|
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=87.47 E-value=22 Score=34.34 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhH-HHHHHHHHhhhCCC-CEEEEeCCCcccc-cCC-C-CCCccCHHHHhhccc-
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVT-NIMTGLMDAYSDSI-PILAITGQVSQKL-LGT-D-AFQEIPVVEVTRYMT- 191 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~-N~~~gl~~A~~~~v-PvlvItg~~~~~~-~g~-~-~~Q~~d~~~~~~~~t- 191 (643)
+.-+|.|.+.+. +++.+|++ |=|.. -.+..|..+...+. |+++|.-+..... .+. . .....|...+.+.+-
T Consensus 53 ~lpaAiGaala~p~~~Vv~i~--GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d~~~~A~a~G~ 130 (188)
T cd03371 53 ASQIALGIALARPDRKVVCID--GDGAALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGY 130 (188)
T ss_pred HHHHHHHHHHhCCCCcEEEEe--CCcHHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCCHHHHHHHcCC
Confidence 556778877665 46666554 43333 34567888877776 6777765443221 111 0 112357777777763
Q ss_pred eeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 192 k~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
++.+++.+++++.+.+++|+. ..||+.|++..|
T Consensus 131 ~~~~~v~~~~el~~al~~a~~-----~~~p~lIev~~~ 163 (188)
T cd03371 131 RAVYEVPSLEELVAALAKALA-----ADGPAFIEVKVR 163 (188)
T ss_pred ceEEecCCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 344578888888777777753 248999998775
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=86.91 E-value=3.3 Score=46.98 Aligned_cols=105 Identities=17% Similarity=0.116 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhCCCCEEEEeCCCccccc-----C---CCCCCccCHHHHhhc
Q 040733 119 GIFAAEGYARSSGTPGVCLVSSGPGVTN-IMTGLMDAYSDSIPILAITGQVSQKLL-----G---TDAFQEIPVVEVTRY 189 (643)
Q Consensus 119 A~~~A~Gyar~sg~~gv~~~t~GpG~~N-~~~gl~~A~~~~vPvlvItg~~~~~~~-----g---~~~~Q~~d~~~~~~~ 189 (643)
+.-+|.|.+.+.++..|++ .|=|... .+.-|..|...++|+++|.-......+ . ...+...|...+.+.
T Consensus 408 glpaaiGa~lA~~~r~v~i--~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a 485 (535)
T TIGR03394 408 GVPAGIGAQCTSGKRILTL--VGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAG 485 (535)
T ss_pred HHHHHHHHHhCCCCCeEEE--EeChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHH
Confidence 3356677777765555664 3544444 458999999999999999865543211 0 112334577888888
Q ss_pred cceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 190 ~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+-....++.+++++...+++|+.. ..+|+.|++..|
T Consensus 486 ~G~~~~~v~~~~eL~~al~~a~~~----~~~p~lIev~i~ 521 (535)
T TIGR03394 486 MGGDGVRVRTRAELAAALDKAFAT----RGRFQLIEAMLP 521 (535)
T ss_pred cCCCceEeCCHHHHHHHHHHHHhc----CCCeEEEEEECC
Confidence 888889999999998888888752 235889999775
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=86.77 E-value=3 Score=43.10 Aligned_cols=143 Identities=17% Similarity=0.092 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHCCCC---E-EEEccCCCcHHHHHHHhhCC-Ce--EEecCChhHHHHHHHHHHHHh-CCcEEEEEccchh
Q 040733 72 GADIIVEALERQGVT---T-VFAYPGGASIEIHQSLTRSN-IR--SILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPG 143 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~---~-vFg~PG~~~~~l~~al~~~~-i~--~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG 143 (643)
.-.+|.++|.+.|+. . +++=.|.+.. ... +. .....| ..|.-+|.|...+. +++.||++-=|-.
T Consensus 12 i~~~~~~a~~~l~~~p~d~iivsdiGc~~~-------~~~~l~~~~~~t~m-G~alPaAiGaklA~Pd~~VVai~GDG~f 83 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVVSGIGCSAK-------TPHYVNVNGFHGLH-GRALPVATGIKLANPHLKVIVVGGDGDL 83 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCcccc-------cCCeEecCCccccc-ccHHHHHHHHHHHCCCCcEEEEeCchHH
Confidence 345788888888873 2 2222232220 111 11 112223 45677899988886 4556655443333
Q ss_pred hHHHHHHHHHhhhCCCCEEEEeCCCcc-----------cccCC-------CCC---CccCHHHHhhccceeeeE-eCCcC
Q 040733 144 VTNIMTGLMDAYSDSIPILAITGQVSQ-----------KLLGT-------DAF---QEIPVVEVTRYMTKHNYL-VLDVD 201 (643)
Q Consensus 144 ~~N~~~gl~~A~~~~vPvlvItg~~~~-----------~~~g~-------~~~---Q~~d~~~~~~~~tk~~~~-v~~~~ 201 (643)
..-.+..+..|...++||++|.-+... ...|. +.. ...+...+...+...... +.+++
T Consensus 84 ~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~~ 163 (287)
T TIGR02177 84 YGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDVA 163 (287)
T ss_pred HhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCHH
Confidence 334567799999999999999753321 11110 000 122344555555433333 46677
Q ss_pred cHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 202 DIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 202 ~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++.+.|++|+. .+||++|++.
T Consensus 164 eL~~ai~~Al~-----~~GpslIeV~ 184 (287)
T TIGR02177 164 HLKEIIKEAIN-----HKGYALVDIL 184 (287)
T ss_pred HHHHHHHHHHh-----CCCCEEEEEe
Confidence 77777777664 3589999884
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.66 E-value=2.8 Score=47.86 Aligned_cols=157 Identities=13% Similarity=0.007 Sum_probs=95.6
Q ss_pred CcHHHHHHHHHHHC-C-CCEEEEcc-CCCcHHHHHHHhhCC-CeEEecCC---hhHHHHHHHHHHHHh-CCcEEEEEccc
Q 040733 70 RKGADIIVEALERQ-G-VTTVFAYP-GGASIEIHQSLTRSN-IRSILPRH---EQGGIFAAEGYARSS-GTPGVCLVSSG 141 (643)
Q Consensus 70 ~~~a~~lv~~L~~~-G-V~~vFg~P-G~~~~~l~~al~~~~-i~~i~~~h---E~~A~~~A~Gyar~s-g~~gv~~~t~G 141 (643)
++-.. +++.|.+. . =+.++..= |.+.......+.-.. -+++.... =.-+.-+|.|.+.+. +|+.||++-=|
T Consensus 381 l~p~~-~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG 459 (565)
T PRK06154 381 INPYR-VVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDA 459 (565)
T ss_pred cCHHH-HHHHHHHhcCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcch
Confidence 44433 44445443 1 14555433 444444444443333 45554322 122567788888776 57777665333
Q ss_pred hhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-c-------C-CC--CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHH
Q 040733 142 PGVTNIMTGLMDAYSDSIPILAITGQVSQKL-L-------G-TD--AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEA 210 (643)
Q Consensus 142 pG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-~-------g-~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A 210 (643)
|+.=....|..|...++|+++|.-...... . + .. .....|...+.+.+-...+++++++++...+++|
T Consensus 460 -~f~m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a 538 (565)
T PRK06154 460 -AFGMTGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERVEDPEMLVPALLRA 538 (565)
T ss_pred -HHhccHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHH
Confidence 333344789999999999999986554221 0 0 00 0012477888888888899999999999999998
Q ss_pred HHHhhcCCCCeEEEEcccch
Q 040733 211 FFIATSGRPGPVLIDIPVDV 230 (643)
Q Consensus 211 ~~~A~s~~~GPV~i~iP~Dv 230 (643)
+.... ..+|+.|++..|-
T Consensus 539 ~~~~~--~~~p~lIev~v~~ 556 (565)
T PRK06154 539 LRKVK--EGTPALLEVITSE 556 (565)
T ss_pred Hhhcc--CCCeEEEEEEeCh
Confidence 87432 2479999998764
|
|
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=86.45 E-value=4 Score=42.23 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHHCCCC---EEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 040733 71 KGADIIVEALERQGVT---TVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTN 146 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~---~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N 146 (643)
..-.+|.++|.++|++ .++..-.+.+.-+. .... ...+...| .-+.-+|.|.+.+. .++.||++-=|-++.-
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~-~~~~--~~~~~g~m-G~alpaAiGaklA~Pd~~VV~i~GDG~~f~m 102 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVVSGIGCSGRLP-GYIN--TYGFHTIH-GRALAIATGLKLANPDLTVIVVTGDGDALAI 102 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCccccccC-cccc--ccchhhhh-hcHHHHHHHHHHhCCCCcEEEEeCccHHHhC
Confidence 4677888889888864 23322222221111 0101 11121233 44556888888876 4556665544444666
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCccc-----------ccCC----CCCC----ccCHHHHhhccceeee---EeCCcCcHH
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQK-----------LLGT----DAFQ----EIPVVEVTRYMTKHNY---LVLDVDDIP 204 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~-----------~~g~----~~~Q----~~d~~~~~~~~tk~~~---~v~~~~~i~ 204 (643)
.++.+..|...++||++|.-+.... ..|. ..+. ..|...+...+-.... .+.+++++.
T Consensus 103 g~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~ 182 (286)
T PRK11867 103 GGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLT 182 (286)
T ss_pred CHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHH
Confidence 6788999999999999997533211 1110 0010 1456666655432222 245666777
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 205 RIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 205 ~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..|++|++ .+||++|++-.+
T Consensus 183 ~al~~Al~-----~~Gp~lIev~~~ 202 (286)
T PRK11867 183 ELIKAAIN-----HKGFSFVEILQP 202 (286)
T ss_pred HHHHHHHh-----CCCCEEEEEeCC
Confidence 77776654 359999998543
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=86.10 E-value=10 Score=43.99 Aligned_cols=150 Identities=15% Similarity=0.128 Sum_probs=90.5
Q ss_pred CCcHHHHHHHHHHHCCC--CEEEEc----cCCCcHHHHHHHhh-CCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 040733 69 PRKGADIIVEALERQGV--TTVFAY----PGGASIEIHQSLTR-SNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSS 140 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV--~~vFg~----PG~~~~~l~~al~~-~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~ 140 (643)
.++..+++.++|.+..- +.|+++ +++.. ++.+.+ .+=|++ ...-|++++.+|.|.|...-+|-|++-
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtg---l~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iy-- 454 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDAS---LITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIP-- 454 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCccc---HHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEee--
Confidence 34677777777766543 445555 33221 233333 233444 567899999999999986667666543
Q ss_pred chhhHHHHHHH-HHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHhhc
Q 040733 141 GPGVTNIMTGL-MDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 141 GpG~~N~~~gl-~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A~s 216 (643)
.+=+.-++--| .++...+.||.++. ++.. ..|.+ .+|.+....+++.+...... ..+++++..+++.|+.
T Consensus 455 stFlqRAyDQI~~Dval~~lpV~~vi-d~aG-lvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~---- 528 (701)
T PLN02225 455 SAFLQRAYDQVVHDVDRQRKAVRFVI-TSAG-LVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAY---- 528 (701)
T ss_pred hhHHHHHHHHHHHHHHhhcCCceEEE-ECCc-cCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----
Confidence 23222333332 33456677877664 3332 23322 36767777899998765543 4566677777766653
Q ss_pred CCCCeEEEEcccc
Q 040733 217 GRPGPVLIDIPVD 229 (643)
Q Consensus 217 ~~~GPV~i~iP~D 229 (643)
...|||+|..|..
T Consensus 529 ~~~gPv~IR~pRg 541 (701)
T PLN02225 529 VTDRPVCFRFPRG 541 (701)
T ss_pred cCCCCEEEEeccc
Confidence 2358999999986
|
|
| >TIGR01973 NuoG NADH-quinone oxidoreductase, chain G | Back alignment and domain information |
|---|
Probab=86.03 E-value=3.5 Score=47.55 Aligned_cols=115 Identities=19% Similarity=0.137 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhc
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNE 335 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~ 335 (643)
-+++++.+++.|++.++..++.|.... +....+.+|++.+|.+-+.....-..... .+...+. ..|.. ..-+.+
T Consensus 288 WdeAl~~ia~kL~~i~~va~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~-~~~~~~~--~~g~~--~~di~~ 362 (603)
T TIGR01973 288 WAEALAIAAEKLKASSRIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFES-ADLRANY--LFNTT--LADIEE 362 (603)
T ss_pred HHHHHHHHHHHHhccCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccccccccc-chhhccc--ccCCC--HHHHHh
Confidence 478889999999888677777666443 34456889999988764332111000000 0111111 11111 234689
Q ss_pred CCEEEEecCccCcccc---Cccc-cccCC-ceEEEEcCCcccccCC
Q 040733 336 CDLLLAAGVRFNERMT---SKLE-DFATR-AKIVHIDIDSNEIGKV 376 (643)
Q Consensus 336 aDlvL~vG~~~~~~~t---~~~~-~~~~~-~~iI~Id~d~~~i~~~ 376 (643)
+|+||++|+.+.+... ..+. ....+ +|+|.||+........
T Consensus 363 ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~ 408 (603)
T TIGR01973 363 ADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYP 408 (603)
T ss_pred CCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhh
Confidence 9999999998744221 1111 11223 7999999877666543
|
This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes. |
| >cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins | Back alignment and domain information |
|---|
Probab=85.96 E-value=4.5 Score=44.97 Aligned_cols=138 Identities=18% Similarity=0.065 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHh------CCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHH
Q 040733 257 DELALRQTLKLIVE------SKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~------AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~ 328 (643)
-+++++.+++.|++ .+.-.++.|.+.. .......+|+..+|.+-+......+..+......+|.. ....
T Consensus 87 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~---~~~~ 163 (461)
T cd02750 87 WDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQ---TDVP 163 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCC---CCCC
Confidence 46778888877763 2222333343322 23344678999889776543222111222233333321 1111
Q ss_pred HHHhhhcCCEEEEecCccCccccC---ccccc-cCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTS---KLEDF-ATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMIL 398 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~---~~~~~-~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l 398 (643)
..+-+.++|+||++|+...+.... .+... ...+|+|.||+......+.-...+.+. .|...++ +|...+
T Consensus 164 ~~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~i~PGtD~al~l-al~~~i 238 (461)
T cd02750 164 ESADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVPIKPGTDAALAL-AMAHVI 238 (461)
T ss_pred ChhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEeccCCCcHHHHHH-HHHHHH
Confidence 123468999999999986432211 11111 245689999988877655322223333 3554444 444333
|
Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins. |
| >TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit | Back alignment and domain information |
|---|
Probab=85.28 E-value=7.2 Score=46.14 Aligned_cols=113 Identities=14% Similarity=0.042 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHhC--CCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCC--CCCcccccCCCCcHHHH
Q 040733 256 PDELALRQTLKLIVES--KNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCT--DELCLRMVGMFGTVYAN 330 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~A--krPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~--hpl~lG~~g~~~~~~~~ 330 (643)
.-+++++.+++.|++. ++..++.++... ...-....|+..+|.+-+.+......-+.. ....+|.. .++.. .
T Consensus 117 SWdEAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~--~~t~~-~ 193 (743)
T TIGR01701 117 SWDDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGIG--KGSVN-L 193 (743)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCCC--CCCCC-H
Confidence 3467888888888875 455566655443 333456788888887654321100000000 01112211 11111 2
Q ss_pred HhhhcCCEEEEecCccCccccC---ccc-cccCCceEEEEcCCcc
Q 040733 331 YAVNECDLLLAAGVRFNERMTS---KLE-DFATRAKIVHIDIDSN 371 (643)
Q Consensus 331 ~~l~~aDlvL~vG~~~~~~~t~---~~~-~~~~~~~iI~Id~d~~ 371 (643)
+-+.++|+||++|......... .+. .....+|+|.||+...
T Consensus 194 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~ 238 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRE 238 (743)
T ss_pred hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 2467999999999986533211 111 1224679999998654
|
This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation. |
| >PLN02683 pyruvate dehydrogenase E1 component subunit beta | Back alignment and domain information |
|---|
Probab=85.20 E-value=13 Score=39.75 Aligned_cols=150 Identities=18% Similarity=0.160 Sum_probs=86.1
Q ss_pred CcHHHHHHHHHHHCCC--CEEEEccCCC-----cHHHHHHH-hhCC-CeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEc
Q 040733 70 RKGADIIVEALERQGV--TTVFAYPGGA-----SIEIHQSL-TRSN-IRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVS 139 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV--~~vFg~PG~~-----~~~l~~al-~~~~-i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t 139 (643)
++..+++.++|.+..- +.++.+..+- .+...+.| .+.+ =|++ ...-|++++.+|.|.|....+|-|++..
T Consensus 27 ~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~~ 106 (356)
T PLN02683 27 MTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFMT 106 (356)
T ss_pred cHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEeh
Confidence 4566667666666643 3466665432 22222222 2332 5666 5679999999999999987787766532
Q ss_pred c---chhhHHHHHHHHHhh--h---CCCCEEEEeCCCcccccCCC-CCCccCHHHHhhccceeee-EeCCcCcHHHHHHH
Q 040733 140 S---GPGVTNIMTGLMDAY--S---DSIPILAITGQVSQKLLGTD-AFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKE 209 (643)
Q Consensus 140 ~---GpG~~N~~~gl~~A~--~---~~vPvlvItg~~~~~~~g~~-~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~ 209 (643)
+ ..+.-.+.+-++--. . -+.||+++... .. ..|.+ .+|..+ ..+++.+-.+.. ...++.++..+++.
T Consensus 107 ~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~-~~g~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~~ 183 (356)
T PLN02683 107 FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GA-AAGVGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLKA 183 (356)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CC-CCCCCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 1 223333333332211 1 12899988633 21 12222 344444 689998875443 35566777777766
Q ss_pred HHHHhhcCCCCeEEEEcc
Q 040733 210 AFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 210 A~~~A~s~~~GPV~i~iP 227 (643)
|+. . +|||+|-.+
T Consensus 184 a~~----~-~gPv~ir~~ 196 (356)
T PLN02683 184 AIR----D-PDPVVFLEN 196 (356)
T ss_pred HHh----C-CCcEEEEEe
Confidence 653 2 489999754
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=85.13 E-value=5.1 Score=45.96 Aligned_cols=107 Identities=8% Similarity=0.010 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-----cCC--CCCCccCHHHHhhcc
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-----LGT--DAFQEIPVVEVTRYM 190 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-----~g~--~~~Q~~d~~~~~~~~ 190 (643)
+.-+|.|++.+. +|+.||++- -=|+.=.+.-|..|...++|+++|.-+..... .+. +..+..|...+.+.+
T Consensus 433 glpaaiGa~lA~p~r~vv~i~G-DG~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~ 511 (578)
T PLN02573 433 SVGATLGYAQAAPDKRVIACIG-DGSFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 511 (578)
T ss_pred hhhHHHHHHHhCCCCceEEEEe-ccHHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHh
Confidence 446788888776 466666543 23444445899999999999999986554321 100 112345777787776
Q ss_pred c-----eeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 191 T-----KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 191 t-----k~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
- .+..++.+++++...+++|+... +.||..|++..|
T Consensus 512 G~~~g~~~~~~V~~~~eL~~al~~a~~~~---~~~p~lieV~v~ 552 (578)
T PLN02573 512 HNGEGKCWTAKVRTEEELIEAIATATGEK---KDCLCFIEVIVH 552 (578)
T ss_pred cCcCCceeEEEecCHHHHHHHHHHHHhhC---CCCcEEEEEEcC
Confidence 2 46789999999988888887532 358999999876
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=85.00 E-value=20 Score=41.29 Aligned_cols=118 Identities=13% Similarity=0.055 Sum_probs=77.6
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec-CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG-DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G-DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+|+....-. .+.-+|-|.+.+. +++.+|++- --|....++.|.+|...+.|+++|.-+=... ..+
T Consensus 43 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G~~~~~---------~~~ 109 (597)
T PRK08273 43 PEFVQARHEE---MAAFMAVAHAKFT-GEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARA---------ALG 109 (597)
T ss_pred CeEEEeccHH---HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCchh---------hcC
Confidence 4555543321 2456777777776 456666554 3455556899999999999999888421100 000
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCC-CCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACG-IPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G-~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~ 617 (643)
. . .....|...+.+.+- ....++++++++.+.+++|+ ...||+.|+++.|-.
T Consensus 110 ~----~--------~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv~ 166 (597)
T PRK08273 110 G----H--------YQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDVQ 166 (597)
T ss_pred C----C--------CCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcchh
Confidence 0 0 023467778888887 67889999988777776655 356899999998754
|
|
| >cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site | Back alignment and domain information |
|---|
Probab=84.89 E-value=3.2 Score=46.68 Aligned_cols=140 Identities=14% Similarity=0.057 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhCC------CcEEEEcCCchhh--HHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHH
Q 040733 257 DELALRQTLKLIVESK------NPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak------rPvIl~G~g~~~~--~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~ 328 (643)
-+++++.+++.|++.+ +..++.+.|.... ...+.+|.+.+|.+-+......+..-..+....|. ... .
T Consensus 75 WdeAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~~~Gs~~~~~~~c~~~~~~~~~~~~G~---~~~-~ 150 (501)
T cd02766 75 WDEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFHALGASELRGTICSGAGIEAQKYDFGA---SLG-N 150 (501)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHHHHHHHhCCCCCCCCCccHHHHHHHHHhhcCC---CCC-C
Confidence 5678888888887643 3444444443321 11235788777766532100000000001111221 111 1
Q ss_pred HHHhhhcCCEEEEecCccCccccC---ccc-cccCCceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHhh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTS---KLE-DFATRAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILES 400 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~---~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~~ 400 (643)
..+-+.++|+||++|+...+.... .+. .....+|+|.||+......+.-...+.|. .|...++..+...++.
T Consensus 151 ~~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~i~PGtD~al~~al~~~ii~~ 228 (501)
T cd02766 151 DPEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQIRPGTDGALALGVAKVLFRE 228 (501)
T ss_pred CHHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeeccCCCcHHHHHHHHHHHHHHC
Confidence 123578999999999886432111 111 11246799999988877654322223333 5666655444444443
|
These members belong to the molybdopterin_binding (MopB) superfamily of proteins |
| >cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite | Back alignment and domain information |
|---|
Probab=84.72 E-value=3.1 Score=47.50 Aligned_cols=142 Identities=16% Similarity=0.094 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCch-hhHHHHHHHHHH-hCCceeecCCCCCCCCCCCCCcccccCCCCcHH
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCL-NSSEELRKFVGL-TGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVY 328 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~-~~~~~l~~lae~-lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~ 328 (643)
-+++++.+++.|++. ++..++.|+... .....+.+|+.. +|.+.+.+.. .-+....+.-+.-.+|......
T Consensus 72 WdeAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~~~~-~~c~~~~~~~~~~~~G~~~~~~ 150 (565)
T cd02754 72 WDEALDLIAERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNS-RLCMASAVAGYKRSFGADGPPG 150 (565)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCcccCCC-cccchHHHHHHHhhccCCCCCC
Confidence 567788888888753 345555454332 223346667763 6766543211 0000000000000112111000
Q ss_pred HHHhhhcCCEEEEecCccCccccC---cccc-ccC--CceEEEEcCCcccccCCCCCCeeEe--cCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTS---KLED-FAT--RAKIVHIDIDSNEIGKVKLPDVSIC--ADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~---~~~~-~~~--~~~iI~Id~d~~~i~~~~~~~~~i~--~D~~~~L~~L~~~l~ 399 (643)
...-+.++|+||++|+...+.... .+.. ... .+|+|.||+........-...+.|. .|...++..+...++
T Consensus 151 ~~~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~i~PGtD~al~la~~~~ii~ 229 (565)
T cd02754 151 SYDDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLPIRPGTDLALLNGLLHVLIE 229 (565)
T ss_pred CHHHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeCCCCCccHHHHHHHHHHHHH
Confidence 112367999999999987432211 1111 112 6799999988877654322223333 466555544433333
|
Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins. |
| >PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane [] | Back alignment and domain information |
|---|
Probab=83.86 E-value=3 Score=45.72 Aligned_cols=128 Identities=15% Similarity=0.197 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCch--hhHHH---HHHHHHHhCCceeecCCCCCCCCCCCCCcccccC------------
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCL--NSSEE---LRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVG------------ 322 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~---l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g------------ 322 (643)
..++++++|..|||.+|+-|+|-. .++.+ +.++.|+-|.-|--- =||-.--+-|
T Consensus 296 ~~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGHMNVLLAEa~Vp 366 (463)
T PF02233_consen 296 SAEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFA---------IHPVAGRMPGHMNVLLAEANVP 366 (463)
T ss_dssp SHHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEE---------E-TTSSSSTTHHHHHHHHCT--
T ss_pred CHHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEE---------eccccCCCCCcceEEEEecCCC
Confidence 467888999999999999999865 45544 444555557666211 1333211112
Q ss_pred ---CCCcHHHHHhhhcCCEEEEecCccC-------cccc--Cccc---cccCCceEEEEcCCcc----cccC--C-CCCC
Q 040733 323 ---MFGTVYANYAVNECDLLLAAGVRFN-------ERMT--SKLE---DFATRAKIVHIDIDSN----EIGK--V-KLPD 380 (643)
Q Consensus 323 ---~~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t--~~~~---~~~~~~~iI~Id~d~~----~i~~--~-~~~~ 380 (643)
..--+..|+-+.+.|++|++|..-. +..+ .+.. -| +.+++|.+..+-. -+++ . ++-+
T Consensus 367 Yd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~-~ak~Viv~Krsm~~Gyagv~NpLF~~~nt 445 (463)
T PF02233_consen 367 YDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVW-KAKQVIVIKRSMSPGYAGVDNPLFYKDNT 445 (463)
T ss_dssp GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GG-GSSEEEEEESSS--TTTS-S-GGGGSTTE
T ss_pred HHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchh-hcCeEEEEEcCCCCCCCCCCCcceecCCc
Confidence 1112455677889999999997521 0011 0111 11 1234555422111 1111 1 2234
Q ss_pred eeEecCHHHHHHHHHHH
Q 040733 381 VSICADAKLVFNRMNMI 397 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~ 397 (643)
.=+.||+++.+++|...
T Consensus 446 ~MlfGDAk~~~~~l~~~ 462 (463)
T PF02233_consen 446 RMLFGDAKKTLEELVAE 462 (463)
T ss_dssp EEEES-HHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHHHh
Confidence 55679999999998754
|
It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C .... |
| >PRK09129 NADH dehydrogenase subunit G; Validated | Back alignment and domain information |
|---|
Probab=83.86 E-value=5.1 Score=47.73 Aligned_cols=136 Identities=12% Similarity=0.005 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHH
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYA 329 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~ 329 (643)
.+++++.+++.|++. +...++.|.... .....+.+|++.+|.+.+........... .....|. +..+..
T Consensus 289 WdeAl~~ia~~L~~i~~~~G~~~i~~~~s~~~t~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~~-~~~~~g~-~~~~~~-- 364 (776)
T PRK09129 289 WETALEYVAEGLKGIIEDHGADQIGALASPHSTLEELYLLQKLARGLGSGNIDHRLRQQDFRD-DAAAPGA-PWLGMP-- 364 (776)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccCCccccc-hhhhhcc-cccCCC--
Confidence 567888888888753 345556565444 34456889999999876532111000000 0000111 111221
Q ss_pred HHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCcccccCCCCCCeeEe-cCHHHHHHHHHH
Q 040733 330 NYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSIC-ADAKLVFNRMNM 396 (643)
Q Consensus 330 ~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~-~D~~~~L~~L~~ 396 (643)
.+-+.++|+||++|+.+.+... ..+. ......|+|.||+...++.....+...+. +|...+|..|..
T Consensus 365 ~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~~~~~~~~~~~~p~~~~~~la~l~~ 436 (776)
T PRK09129 365 IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDFLFPVAQRIIVAPSAWADALAGVAA 436 (776)
T ss_pred HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCccccccccccCccCChHHHHHHHHHHHH
Confidence 2346899999999998643221 1111 11245689999876665432222222221 344444544443
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=83.74 E-value=2.9 Score=47.79 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=76.8
Q ss_pred CeEEecCCh---hHHHHHHHHHHHHhCCcEEEEEccchhhHH-HHHHHHHhhhCCCCEEEEeCCCcccc----c--CCC-
Q 040733 108 IRSILPRHE---QGGIFAAEGYARSSGTPGVCLVSSGPGVTN-IMTGLMDAYSDSIPILAITGQVSQKL----L--GTD- 176 (643)
Q Consensus 108 i~~i~~~hE---~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N-~~~gl~~A~~~~vPvlvItg~~~~~~----~--g~~- 176 (643)
.+++..+.- ..+.-+|.|++.+.+|+.+|++ |=|... .++.+..|..-++|+++|.-+..... + +++
T Consensus 416 ~~~~~~~g~~~~G~~lpaaiGaala~~~~vv~i~--GDGsf~~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~ 493 (568)
T PRK07449 416 YPVYSNRGASGIDGLLSTAAGVARASAKPTVALI--GDLSFLHDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEE 493 (568)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEe--chHHhhcCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCc
Confidence 555554432 2256788999888778776654 443333 35889999999999999986544211 0 000
Q ss_pred --------CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 177 --------AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 177 --------~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.....|...+.+.+--..+++.+++++...+++|+. .+||+.|++..|
T Consensus 494 ~~~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~~-----~~~p~lIev~id 549 (568)
T PRK07449 494 PVFERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADALP-----TPGLTVIEVKTN 549 (568)
T ss_pred chhhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHhc-----CCCCEEEEEeCC
Confidence 112356677777776667888888888888887753 358999999775
|
|
| >PRK09212 pyruvate dehydrogenase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=83.71 E-value=11 Score=39.88 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=31.0
Q ss_pred HHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 574 MLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 574 ~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
|..+.+++ |+..+.-.++.|++.+++.+++.++|++|
T Consensus 133 ~ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~~~~Pv~i 170 (327)
T PRK09212 133 YAAWYSHIPGLKVVAPYFAADCKGLLKTAIRDPNPVIF 170 (327)
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEE
Confidence 44666665 77888889999999999999988999988
|
|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.31 E-value=5.4 Score=42.35 Aligned_cols=117 Identities=21% Similarity=0.112 Sum_probs=73.6
Q ss_pred CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCC-CCCccC-
Q 040733 108 IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTD-AFQEIP- 182 (643)
Q Consensus 108 i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~~Q~~d- 182 (643)
...+....=--|+.+|.+......+..|+++..|=|++| ...++-=|..-+.|||++.=+.-. .++.. ..|...
T Consensus 134 ~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~y-AiSvp~~~q~~~~ 212 (358)
T COG1071 134 GSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQY-AISVPRSRQTAAE 212 (358)
T ss_pred CCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCc-eeecchhhcccch
Confidence 444555555566677777665554556999999999988 566777778889999999854322 22211 113211
Q ss_pred ---HHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 183 ---VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 183 ---~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+....-.+......=.++..+-++.++|...|+.+. ||+.|+.
T Consensus 213 ~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~-GPtLIE~ 258 (358)
T COG1071 213 IIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGE-GPTLIEA 258 (358)
T ss_pred hHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCC-CCEEEEE
Confidence 111111222222222355678889999999999887 9999986
|
|
| >cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists | Back alignment and domain information |
|---|
Probab=82.63 E-value=7.1 Score=41.96 Aligned_cols=110 Identities=15% Similarity=0.038 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhCC--CcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhh
Q 040733 257 DELALRQTLKLIVESK--NPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak--rPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l 333 (643)
.+++++.+++.|.+.+ +-.+++|..+. +..-.+.+|++.+|...+.+-......+..+... |.+.+..+ -.-+
T Consensus 71 W~eAl~~ia~~l~~~~~~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~-~~~~~~~s---l~di 146 (366)
T cd02774 71 WKTAFKFLNKFILLKKFSKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDL-ENYLFNNS---LKNL 146 (366)
T ss_pred HHHHHHHHHHHHhhcCcccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccccccccccccccc-cCCccCCC---HHHH
Confidence 4677888888886643 45666666554 5566788999999988776432211111111111 22222111 1247
Q ss_pred hcCCEEEEecCccCccc---cCccc-cc-cCCceEEEEcCCc
Q 040733 334 NECDLLLAAGVRFNERM---TSKLE-DF-ATRAKIVHIDIDS 370 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~---t~~~~-~~-~~~~~iI~Id~d~ 370 (643)
+++|+||++|+...+-. ..++. .+ ..+.+++.|++..
T Consensus 147 e~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 147 DKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred hhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 89999999999864321 11221 12 2356899887655
|
NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=82.30 E-value=9 Score=44.12 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhH-HHHHHHHHhhhCCCCEEEEeCCCcccc-cCC------C------CCCccCH
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVT-NIMTGLMDAYSDSIPILAITGQVSQKL-LGT------D------AFQEIPV 183 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~-N~~~gl~~A~~~~vPvlvItg~~~~~~-~g~------~------~~Q~~d~ 183 (643)
+.-+|.|.+.+. .++.|+++- --++. +.+..|..|...++|+++|.-+..... .+. + .++.+|.
T Consensus 408 ~~~~AiGa~~a~p~~~Vv~i~G-DG~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~ 486 (595)
T TIGR03336 408 SIGVASGLSKAGEKQRIVAFIG-DSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISI 486 (595)
T ss_pred hHHHHhhhhhcCCCCCEEEEec-cchhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCH
Confidence 345777777765 455555432 33343 348999999999999999875543211 110 0 1234678
Q ss_pred HHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 184 VEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 184 ~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..+.+.+--...++.+++++.+ +..|++.+.. .+||..|.+..+
T Consensus 487 ~~ia~a~G~~~~~v~~~~~l~~-l~~al~~a~~-~~gp~li~v~~~ 530 (595)
T TIGR03336 487 EELCRASGVEFVEVVDPLNVKE-TIEVFKAALA-AEGVSVIIAKQP 530 (595)
T ss_pred HHHHHHcCCCEEEEeCcCCHHH-HHHHHHHHHh-cCCCEEEEEccc
Confidence 8888888767778888877532 3334444433 358999998664
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site | Back alignment and domain information |
|---|
Probab=82.23 E-value=10 Score=43.01 Aligned_cols=137 Identities=16% Similarity=0.102 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhC------CCcEEEEcCCchh--h-HHHHHHHHHHhCCceeecCCCCCCCCCCCCCcc---cccCCC
Q 040733 257 DELALRQTLKLIVES------KNPVLCVGGGCLN--S-SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCL---RMVGMF 324 (643)
Q Consensus 257 ~~~~i~~~~~~L~~A------krPvIl~G~g~~~--~-~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~l---G~~g~~ 324 (643)
-+++++.+++.|++. +...++.|.+... . ......|...+|.+-+.+. +.+.. .+... ..+|..
T Consensus 71 WdeAl~~ia~kl~~i~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~lG~~~~~~~---~~~~~-~~~~~~~~~~~G~~ 146 (539)
T cd02762 71 WDEAFDEIAERLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYFSA---ATADQ-KPGHFWSGLMFGHP 146 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEecCcccccchHHHHHHHHHHHhCCCccccc---cchhh-hHHHHHHHHhcCCC
Confidence 467788888877643 3455555655432 1 1123466667776532210 11110 01001 112221
Q ss_pred CcHHHHHhhhcCCEEEEecCccCccccC---------ccc-cccCCceEEEEcCCcccccCCCCCCeeEe----cCHHHH
Q 040733 325 GTVYANYAVNECDLLLAAGVRFNERMTS---------KLE-DFATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLV 390 (643)
Q Consensus 325 ~~~~~~~~l~~aDlvL~vG~~~~~~~t~---------~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~ 390 (643)
.... .+-+.++|+||++|+...+.... .+. .....+|+|.||+...+..+. +|..|. .|...+
T Consensus 147 ~~~~-~~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~--AD~~l~irPGtD~aL~ 223 (539)
T cd02762 147 GLHP-VPDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKL--ADEHLFVRPGTDAWLL 223 (539)
T ss_pred CCCC-chhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHh--cCEeeCcCCCcHHHHH
Confidence 1111 22468999999999886432110 111 112356899999888776653 444443 466555
Q ss_pred HHHHHHHHhh
Q 040733 391 FNRMNMILES 400 (643)
Q Consensus 391 L~~L~~~l~~ 400 (643)
+..+...++.
T Consensus 224 ~a~~~~ii~~ 233 (539)
T cd02762 224 AAMLAVLLAE 233 (539)
T ss_pred HHHHHHHHHC
Confidence 5444444443
|
These members belong to the molybdopterin_binding (MopB) superfamily of proteins. |
| >cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria | Back alignment and domain information |
|---|
Probab=81.62 E-value=20 Score=39.13 Aligned_cols=112 Identities=15% Similarity=0.072 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhCC------CcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHH
Q 040733 257 DELALRQTLKLIVESK------NPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYA 329 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak------rPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~ 329 (643)
-+++++.+++.|.+.+ .-.++.|.... +....+.+|++.+|.|.+........+ .+.......+..+..
T Consensus 71 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-- 146 (414)
T cd02772 71 WETALEYVAEGLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHRLRQSDF--RDDAKASGAPWLGMP-- 146 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEEecCCCCcHHHHHHHHHHHHhCCCCccCccccCcc--chhhhhccCCCCCCc--
Confidence 5678888888887643 23344444333 445678899999998865432111000 000000001111221
Q ss_pred HHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCccc
Q 040733 330 NYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSNE 372 (643)
Q Consensus 330 ~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~~ 372 (643)
.+-++++|+||++|+...+... ..+. ......|+|.||+-...
T Consensus 147 ~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 147 IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 2347889999999998643221 1111 11235689999875543
|
The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t |
| >PRK09939 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.30 E-value=5.2 Score=47.25 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhCCCc---EEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccc---cCC-CCcH
Q 040733 256 PDELALRQTLKLIVESKNP---VLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRM---VGM-FGTV 327 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrP---vIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~---~g~-~~~~ 327 (643)
.-+++++.+++.|++.+.| .++.++... +..-.+..|+..+|-+-+.+-. . +.. .+-..|. +|. .++.
T Consensus 126 SWdEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s-~--~C~-~~~~~~l~~~~G~g~~t~ 201 (759)
T PRK09939 126 SWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCS-N--MCH-EPTSVGLAASIGVGKGTV 201 (759)
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCC-C--CCc-hHHHHHHHHhcCCCCCCC
Confidence 3578888888888876555 444444333 3334567788888876542211 1 100 0111111 121 1121
Q ss_pred HHHHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCcc
Q 040733 328 YANYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSN 371 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~ 371 (643)
... -++++|+||++|+...+... ..+. .....+|+|.||+-..
T Consensus 202 ~l~-Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 202 LLE-DFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred CHH-HHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 222 36899999999998643211 1111 1124579999998553
|
|
| >PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.17 E-value=18 Score=38.63 Aligned_cols=37 Identities=11% Similarity=0.364 Sum_probs=31.1
Q ss_pred HHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 574 MLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 574 ~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
+..+.+++ |+..+...++.|++.+++.+++.++|++|
T Consensus 164 ~ea~lr~iPn~~V~~Psd~~e~~~~l~~a~~~~~P~~i 201 (355)
T PTZ00182 164 FEAYFAHVPGLKVVAPSDPEDAKGLLKAAIRDPNPVVF 201 (355)
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEE
Confidence 34666665 77888889999999999999998999977
|
|
| >cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
Probab=81.00 E-value=2.2 Score=41.86 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=37.6
Q ss_pred HHHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
.+.+.++++|++|++|+++.-.....+-. ....+++|.|+.++...+. ..++.+.+|
T Consensus 148 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~--~~d~~~~~~ 206 (206)
T cd01410 148 GAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDK--LADLVIHGD 206 (206)
T ss_pred HHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCc--cccEEEeCC
Confidence 34566789999999999986443333321 1235789999998876654 345665543
|
Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. |
| >COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.91 E-value=11 Score=38.58 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=86.0
Q ss_pred CcHHHHHHHHHHHCCC--CEEEEccC-C-CcHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 70 RKGADIIVEALERQGV--TTVFAYPG-G-ASIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV--~~vFg~PG-~-~~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.+..+.+.+.|.++|= +.+..+-- . .++.+..-..+.+=|++ ..--||..+.+|.|.|...-+|-|+ |.++=+
T Consensus 7 ~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~--tfa~F~ 84 (312)
T COG3958 7 ESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVS--TFAAFL 84 (312)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceee--chHHHH
Confidence 3556677777776663 22333332 2 22222211122232344 4578999999999999888888765 445433
Q ss_pred H-HHHHHHHHh-hhCCCCEEEEeCCCccccc-CCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCe
Q 040733 145 T-NIMTGLMDA-YSDSIPILAITGQVSQKLL-GTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 145 ~-N~~~gl~~A-~~~~vPvlvItg~~~~~~~-g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GP 221 (643)
+ -+.--|.++ .+++.||=++.....-..- .-..+|.++...++|-+.+... -.|.|.. ..+..+..+... .||
T Consensus 85 s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V--~~P~D~v-~~~~i~~~~~~~-~GP 160 (312)
T COG3958 85 SRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTV--IAPADAV-ETRAILDQIADY-KGP 160 (312)
T ss_pred HHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceE--EccCcHH-HHHHHHHHHHhc-CCC
Confidence 3 222222222 1445665555543332221 2235899999999999885443 3344433 444444444433 499
Q ss_pred EEEEcccc
Q 040733 222 VLIDIPVD 229 (643)
Q Consensus 222 V~i~iP~D 229 (643)
||+.+..+
T Consensus 161 ~Y~Rl~R~ 168 (312)
T COG3958 161 VYMRLGRG 168 (312)
T ss_pred EEEEecCC
Confidence 99999873
|
|
| >PLN02683 pyruvate dehydrogenase E1 component subunit beta | Back alignment and domain information |
|---|
Probab=80.62 E-value=16 Score=39.04 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=80.9
Q ss_pred CCHHHH-HHHHHhcCCCCCeEEE--eCCChhHH--H-HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEE
Q 040733 434 IPPQYA-IQILNELTDDEETIIS--TGVGQHQM--W-AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVD 507 (643)
Q Consensus 434 i~~~~~-~~~L~~~l~~~d~iv~--~d~G~~~~--~-~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~ 507 (643)
++...+ .+.|.+.+.+++-+++ .|+|.... + ...++.-..|.+|+..+- +=...++.|.|.+++. -++++.
T Consensus 27 ~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GI--AEq~~vg~AaGlA~~G-~~P~v~ 103 (356)
T PLN02683 27 MTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPI--TEAGFTGIGVGAAYAG-LKPVVE 103 (356)
T ss_pred cHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECch--hHHHHHHHHHHHHHCC-CEEEEE
Confidence 444433 3466666543233333 56554211 1 112222223677776432 2233678888888764 355544
Q ss_pred EecCccccCC-HHHH-HHHHHhC--------CCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHH
Q 040733 508 IDGDGSFIMN-LQEL-AAIKAEN--------IPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKF 577 (643)
Q Consensus 508 i~GDGsf~m~-~~eL-~Ta~~~~--------lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~l 577 (643)
+.. ..|++- ...| ..+...+ +||+++..+ +++. +... + +...+ ..+
T Consensus 104 ~~~-~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~----------g~G~--t---------H~~~~-~a~ 159 (356)
T PLN02683 104 FMT-FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAA----------GVGA--Q---------HSQCF-AAW 159 (356)
T ss_pred Eeh-hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCC----------CCCC--c---------cccCH-HHH
Confidence 321 123332 2223 3344444 898877544 3211 1000 0 11223 455
Q ss_pred HhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 578 AEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 578 A~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
.+++ |+..+...+..|++..++.+++.++|++|-
T Consensus 160 lr~iPnl~V~~Pad~~e~~~~l~~a~~~~gPv~ir 194 (356)
T PLN02683 160 YSSVPGLKVLAPYSSEDARGLLKAAIRDPDPVVFL 194 (356)
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 5555 788888899999999999999888999884
|
|
| >cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1 | Back alignment and domain information |
|---|
Probab=80.45 E-value=11 Score=40.65 Aligned_cols=111 Identities=18% Similarity=0.115 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhCC--CcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHh
Q 040733 256 PDELALRQTLKLIVESK--NPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYA 332 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~Ak--rPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~ 332 (643)
.-+++++.+++.|++.+ ...++.|.... +....+.+|++.+|.+-+.+.......+. .++.....+.. . .-
T Consensus 69 sWdeAl~~ia~~l~~~~~~si~~~~g~~~~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~----~~~~~~~~~~~-~-~d 142 (375)
T cd02773 69 TWEEALAAIAKALKGVKPDEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDGPDLPA----DLRSNYLFNTT-I-AG 142 (375)
T ss_pred CHHHHHHHHHHHHhhcCcCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccccccccc----ccccccccCCC-H-HH
Confidence 35788999999998875 56666665433 44556889999999876543221111111 11110011111 1 23
Q ss_pred hhcCCEEEEecCccCccc---cCcc-cccc-CCceEEEEcCCccc
Q 040733 333 VNECDLLLAAGVRFNERM---TSKL-EDFA-TRAKIVHIDIDSNE 372 (643)
Q Consensus 333 l~~aDlvL~vG~~~~~~~---t~~~-~~~~-~~~~iI~Id~d~~~ 372 (643)
++++|+||++|+...+-. .... ..+. ..+++|.||+....
T Consensus 143 i~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~ 187 (375)
T cd02773 143 IEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDL 187 (375)
T ss_pred HhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCcccc
Confidence 689999999999863221 1111 1222 35799999876543
|
The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made |
| >KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.09 E-value=7.2 Score=42.96 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=54.8
Q ss_pred CeEEE--EecCccccCC--HHHHHHHH---HhCCC-eEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCH
Q 040733 503 AIVVD--IDGDGSFIMN--LQELAAIK---AENIP-VKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDM 574 (643)
Q Consensus 503 ~~Vv~--i~GDGsf~m~--~~eL~Ta~---~~~lp-v~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~ 574 (643)
-.|++ +-||++|.=- .+|-.+.. ...+. -+.+|.||+- |.. +|.+..-...--
T Consensus 318 d~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQv-gfT------------------tp~~rGRSs~yc 378 (913)
T KOG0451|consen 318 DHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQV-GFT------------------TPGDRGRSSAYC 378 (913)
T ss_pred CceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccc-ccc------------------Ccccccccchhh
Confidence 34544 6699998642 44433332 22332 4566777763 211 111111122344
Q ss_pred HHHHhHCCCCEEEe--CChhHHHHHHHHHHh----CCCcEEEEEEe
Q 040733 575 LKFAEACGIPAARV--TKKKDVRAAIQLMLE----TPGPYLLDVMV 614 (643)
Q Consensus 575 ~~lA~a~G~~~~~V--~~~~eL~~al~~al~----~~gp~lIeV~v 614 (643)
+.+|++++++.+.| ++++|+..+-+-|++ -.+-++|++.+
T Consensus 379 sDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~C 424 (913)
T KOG0451|consen 379 SDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNC 424 (913)
T ss_pred hHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHH
Confidence 68899999998887 689999888777665 34566777655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 643 | ||||
| 1ybh_A | 590 | Crystal Structure Of Arabidopsis Thaliana Acetohydr | 0.0 | ||
| 3e9y_A | 584 | Arabidopsis Thaliana Acetohydroxyacid Synthase In C | 0.0 | ||
| 1n0h_A | 677 | Crystal Structure Of Yeast Acetohydroxyacid Synthas | 1e-107 | ||
| 1jsc_A | 630 | Crystal Structure Of The Catalytic Subunit Of Yeast | 1e-107 | ||
| 2pan_A | 616 | Crystal Structure Of E. Coli Glyoxylate Carboligase | 1e-63 | ||
| 3eya_A | 549 | Structural Basis For Membrane Binding And Catalytic | 7e-44 | ||
| 3ey9_A | 572 | Structural Basis For Membrane Binding And Catalytic | 8e-44 | ||
| 1ozg_A | 566 | The Crystal Structure Of Klebsiella Pneumoniae Acet | 1e-40 | ||
| 2pgn_A | 589 | The Crystal Structure Of Fad And Thdp-Dependent Cyc | 1e-38 | ||
| 2ez4_A | 603 | Pyruvate Oxidase Variant F479w Length = 603 | 6e-36 | ||
| 1pow_A | 585 | The Refined Structures Of A Stabilized Mutant And O | 7e-36 | ||
| 4fee_A | 603 | High-Resolution Structure Of Pyruvate Oxidase In Co | 1e-35 | ||
| 1y9d_A | 603 | Pyruvate Oxidase Variant V265a From Lactobacillus P | 1e-35 | ||
| 1pox_A | 585 | The Refined Structures Of A Stabilized Mutant And O | 7e-35 | ||
| 1v5e_A | 590 | Crystal Structure Of Pyruvate Oxidase Containing Fa | 8e-34 | ||
| 1v5f_A | 589 | Crystal Structure Of Pyruvate Oxidase Complexed Wit | 1e-33 | ||
| 1upb_A | 573 | Carboxyethylarginine Synthase From Streptomyces Cla | 5e-31 | ||
| 1upa_A | 573 | Carboxyethylarginine Synthase From Streptomyces Cla | 2e-29 | ||
| 2uz1_B | 563 | 1.65 Angstrom Structure Of Benzaldehyde Lyase Compl | 8e-29 | ||
| 2ag0_A | 563 | Crystal Structure Of Benzaldehyde Lyase (Bal)- Nati | 9e-29 | ||
| 3d7k_A | 570 | Crystal Structure Of Benzaldehyde Lyase In Complex | 1e-28 | ||
| 3iae_A | 570 | Structure Of Benzaldehyde Lyase A28s Mutant With Be | 1e-28 | ||
| 3iaf_A | 570 | Structure Of Benzaldehyde Lyase A28s Mutant With Mo | 1e-28 | ||
| 2ag1_A | 563 | Crystal Structure Of Benzaldehyde Lyase (Bal)- Seme | 6e-27 | ||
| 2q27_A | 564 | Crystal Structure Of Oxalyl-Coa Decarboxylase From | 2e-24 | ||
| 2c31_A | 568 | Crystal Structure Of Oxalyl-Coa Decarboxylase In Co | 2e-24 | ||
| 2v3w_A | 528 | Crystal Structure Of The Benzoylformate Decarboxyla | 1e-17 | ||
| 1po7_A | 528 | High Resolution Structure Of E28a Mutant Benzoylfor | 2e-17 | ||
| 3f6b_X | 525 | Crystal Structure Of Benzoylformate Decarboxylase I | 2e-17 | ||
| 2fn3_A | 528 | High Resolution Structure Of S26a Mutant Of Benzoyl | 3e-17 | ||
| 1yno_A | 527 | High Resolution Structure Of Benzoylformate Decarbo | 3e-17 | ||
| 3fzn_A | 534 | Intermediate Analogue In Benzoylformate Decarboxyla | 3e-17 | ||
| 1mcz_A | 528 | Benzoylformate Decarboxylase From Pseudomonas Putid | 3e-17 | ||
| 1pi3_A | 528 | E28q Mutant Benzoylformate Decarboxylase From Pseud | 3e-17 | ||
| 2fwn_A | 528 | Phosphorylation Of An Active Site Serine In A Thdp- | 4e-17 | ||
| 2vbf_A | 570 | The Holostructure Of The Branched-Chain Keto Acid D | 7e-15 | ||
| 2vbi_A | 566 | Holostructure Of Pyruvate Decarboxylase From Acetob | 4e-12 | ||
| 2vjy_A | 563 | Pyruvate Decarboxylase From Kluyveromyces Lactis In | 4e-11 | ||
| 2nxw_A | 565 | Crystal Structure Of Phenylpyruvate Decarboxylase O | 3e-09 | ||
| 1qpb_A | 563 | Pyruvate Decarboyxlase From Yeast (Form B) Complexe | 6e-09 | ||
| 2w93_A | 563 | Crystal Structure Of The Saccharomyces Cerevisiae P | 7e-09 | ||
| 1ovm_A | 552 | Crystal Structure Of Indolepyruvate Decarboxylase F | 7e-09 | ||
| 2vk1_A | 563 | Crystal Structure Of The Saccharomyces Cerevisiae P | 3e-08 | ||
| 2vk8_A | 563 | Crystal Structure Of The Saccharomyces Cerevisiae P | 4e-08 | ||
| 1pvd_A | 555 | Crystal Structure Of The Thiamin Diphosphate Depend | 4e-08 | ||
| 1pyd_A | 556 | Catalytic Centers In The Thiamin Diphosphate Depend | 4e-08 | ||
| 1zpd_A | 568 | Pyruvate Decarboxylase From Zymomonas Mobilis Lengt | 5e-06 | ||
| 3oe1_A | 568 | Pyruvate Decarboxylase Variant Glu473asp From Z. Mo | 1e-05 | ||
| 2wva_A | 568 | Structural Insights Into The Pre-Reaction State Of | 2e-05 |
| >pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide Chlorimuron Ethyl Length = 590 | Back alignment and structure |
|
| >pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex With Monosulfuron Length = 584 | Back alignment and structure |
|
| >pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl Length = 677 | Back alignment and structure |
|
| >pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast Acetohydroxyacid Synthase: A Target For Herbicidal Inhibitors Length = 630 | Back alignment and structure |
|
| >pdb|2PAN|A Chain A, Crystal Structure Of E. Coli Glyoxylate Carboligase Length = 616 | Back alignment and structure |
|
| >pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic Activation Of The Peripheral Membrane Enzyme Pyruvate Oxidase From Escherichia Coli Length = 549 | Back alignment and structure |
|
| >pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic Activation Of The Peripheral Membrane Enzyme Pyruvate Oxidase From Escherichia Coli Length = 572 | Back alignment and structure |
|
| >pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae Acetolactate Synthase With Enzyme-bound Cofactor And With An Unusual Intermediate Length = 566 | Back alignment and structure |
|
| >pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent Cyclohexane-1,2-Dione Hydrolase In Complex With Cyclohexane-1,2-Dione Length = 589 | Back alignment and structure |
|
| >pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w Length = 603 | Back alignment and structure |
|
| >pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum Length = 585 | Back alignment and structure |
|
| >pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex With Reaction Intermediate 2-Hydroxyethyl-Thiamin Diphosphate Carbanion-Enamine, Crystal B Length = 603 | Back alignment and structure |
|
| >pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus Plantarum Length = 603 | Back alignment and structure |
|
| >pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum Length = 585 | Back alignment and structure |
|
| >pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From Aerococcus Viridans Length = 590 | Back alignment and structure |
|
| >pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad And Tpp, From Aerococcus Viridans Length = 589 | Back alignment and structure |
|
| >pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces Clavuligerus Length = 573 | Back alignment and structure |
|
| >pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces Clavuligerus (semet Structure) Length = 573 | Back alignment and structure |
|
| >pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed With 2-Methyl-2,4-Pentanediol Length = 563 | Back alignment and structure |
|
| >pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native Length = 563 | Back alignment and structure |
|
| >pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With The Inhibitor Mbp Length = 570 | Back alignment and structure |
|
| >pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With Benzoylphosphonate Length = 570 | Back alignment and structure |
|
| >pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With Monomethyl Benzoylphosphonate Length = 570 | Back alignment and structure |
|
| >pdb|2AG1|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet Length = 563 | Back alignment and structure |
|
| >pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From Escherichia Coli Length = 564 | Back alignment and structure |
|
| >pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex With The Cofactor Derivative Thiamin-2-Thiazolone Diphosphate And Adenosine Diphosphate Length = 568 | Back alignment and structure |
|
| >pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase Variant L461a From Pseudomonas Putida Length = 528 | Back alignment and structure |
|
| >pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Length = 528 | Back alignment and structure |
|
| >pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In Complex With The Pyridyl Inhibitor Paa Length = 525 | Back alignment and structure |
|
| >pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed With Thiamine Thiazolone Diphosphate Length = 528 | Back alignment and structure |
|
| >pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase From Pseudomonas Putida Complexed With Thiamine Thiazolone Diphosphate Length = 527 | Back alignment and structure |
|
| >pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase Length = 534 | Back alignment and structure |
|
| >pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida Complexed With An Inhibitor, R-Mandelate Length = 528 | Back alignment and structure |
|
| >pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Length = 528 | Back alignment and structure |
|
| >pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp- Dependent Enzyme By Phosphonate Inactivation Length = 528 | Back alignment and structure |
|
| >pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid Decarboxylase (Kdca) From Lactococcus Lactis Length = 570 | Back alignment and structure |
|
| >pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianus Length = 566 | Back alignment and structure |
|
| >pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In Complex With The Substrate Analogue Methyl Acetylphosphonate Length = 563 | Back alignment and structure |
|
| >pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of Azospirillum Brasilense Length = 565 | Back alignment and structure |
|
| >pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With Pyruvamide Length = 563 | Back alignment and structure |
|
| >pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate Decarboxylase Variant E477q In Complex With The Surrogate Pyruvamide Length = 563 | Back alignment and structure |
|
| >pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From Enterobacter Cloacae Length = 552 | Back alignment and structure |
|
| >pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate Decarboxylase Variant D28a In Complex With Its Substrate Length = 563 | Back alignment and structure |
|
| >pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate Decarboxylase Variant E477q In Complex With Its Substrate Length = 563 | Back alignment and structure |
|
| >pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent Enzyme Pyruvate Decarboxylase From The Yeast Saccharomyces Cerevisiae At 2.3 Angstroms Resolution Length = 555 | Back alignment and structure |
|
| >pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent Enzyme Pyruvate Decarboxylase At 2.4 Angstroms Resolution Length = 556 | Back alignment and structure |
|
| >pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis Length = 568 | Back alignment and structure |
|
| >pdb|3OE1|A Chain A, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis In Complex With Reaction Intermediate 2-Lactyl-Thdp Length = 568 | Back alignment and structure |
|
| >pdb|2WVA|A Chain A, Structural Insights Into The Pre-Reaction State Of Pyruvate Decarboxylase From Zymomonas Mobilis Length = 568 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 643 | |||
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 0.0 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 0.0 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 0.0 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 0.0 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 0.0 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 0.0 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 0.0 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 0.0 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 0.0 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 0.0 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 0.0 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 0.0 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 0.0 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 0.0 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 1e-175 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 1e-173 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 1e-172 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 1e-168 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 1e-165 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 1e-118 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 1e-113 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 1e-96 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 | |
| 3cf4_G | 170 | Acetyl-COA decarboxylase/synthase epsilon subunit; | 2e-05 | |
| 1ytl_A | 174 | Acetyl-COA decarboxylase/synthase complex epsilon | 3e-04 |
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Length = 677 | Back alignment and structure |
|---|
Score = 763 bits (1972), Expect = 0.0
Identities = 237/674 (35%), Positives = 351/674 (52%), Gaps = 53/674 (7%)
Query: 1 MATTLSPPFIFNTPKSPPTISRPLMPLPYSYNRIKKPSLHVTNSTLNIPTSTAPFQQTDF 60
++ L P + R M P + + N+ P + +
Sbjct: 7 HSSGLVPRGSGMKETAAAKFERQHMDSP-DLGTDDDDKAMGSAPSFNVDPLEQPAEPSKL 65
Query: 61 SSRFAPDKPRK-------GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSIL 112
+ + + G I E + RQ V TVF YPGGA + ++ ++ S+ +L
Sbjct: 66 AKKLRAEPDMDTSFVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVL 125
Query: 113 PRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL 172
P+HEQG AEGYAR+SG PGV LV+SGPG TN++T + DA++D IP++ TGQV
Sbjct: 126 PKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSA 185
Query: 173 LGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL 232
+GTDAFQE VV ++R TK N +V V+++P I EAF IATSGRPGPVL+D+P DV
Sbjct: 186 IGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTA 245
Query: 233 ELAVPNWNQPCKLPSCISSLP-----KEPDELALRQTLKLIVESKNPVLCVGGGCLNS-- 285
+ LPS + E ++ + LI +K PVL VG G LN
Sbjct: 246 AILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHAD 305
Query: 286 -SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGV 344
L++ IPVT T GLG F D L M+GM G AN AV DL++A G
Sbjct: 306 GPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGA 365
Query: 345 RFNERMTSKLEDFATRAK---------IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMN 395
RF++R+T + FA A+ I+H ++ I KV +++ DA +M
Sbjct: 366 RFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMM 425
Query: 396 MILESKGVGFMFDFSAWREELHEQKKKYPFSY--KTFGEEIPPQYAIQILNELTDDE--E 451
+ + S W ++++ KK+YP++Y +T G +I PQ I+ L+++ +D
Sbjct: 426 SKIFPVK-----ERSEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVANDTGRH 480
Query: 452 TIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGD 511
I++TGVGQHQMWA Q + ++ +TS G G+MG+GLPAA+GA VA P ++V+DIDGD
Sbjct: 481 VIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGD 540
Query: 512 GSFIMNLQELAAIKAENIPVKILLINNQYLGM-----NVEYEDRYFEANRANSFLGDPLR 566
SF M L EL++ PVKIL++NN+ GM ++ YE RY +++ +
Sbjct: 541 ASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRY-----SHTHQLN--- 592
Query: 567 KSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPY 626
PD +K AEA G+ RV K++++ A ++ + T GP LL+V V + V+PM+
Sbjct: 593 -----PDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAG 647
Query: 627 DKSFKDTILEDDGR 640
+ I D
Sbjct: 648 GSGLDEFINFDPEV 661
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Length = 589 | Back alignment and structure |
|---|
Score = 748 bits (1933), Expect = 0.0
Identities = 141/583 (24%), Positives = 235/583 (40%), Gaps = 25/583 (4%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN--IRSILPRHEQGGIFAAEGYA 127
++GAD+IVEALE G V + G S + + ++S+ R I P E GG + GY
Sbjct: 4 KRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYN 63
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLG-TDAFQEIPVVEV 186
G + + +A + IP + I +L G ++A Q++P
Sbjct: 64 YVKDRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQSF 123
Query: 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLP 246
T + + V +D + I EAF +A GP +DIP D+ + P
Sbjct: 124 TP-IARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLTADQIDDKALVPRGAT 182
Query: 247 SCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTT 304
+ +R+ +V +KNPV+ GGG S SE L K + G+PV T+
Sbjct: 183 R--AKSVLHAPNEDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTS 240
Query: 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
G G+FP T L + G G AN + D +L G R ++ ++ K V
Sbjct: 241 TGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWGIAQ-GYITKMPKFV 299
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGV--GFMFDFSAWREELHEQKKK 422
H+D D +G P +S+ ADAK ++ +L + + E +
Sbjct: 300 HVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAA 359
Query: 423 YPFSYK----TFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
+ + G A+ + ++ E II T +G H + + +R R+L+
Sbjct: 360 WDGWVREQESGDGMPASMFRAMAEVRKVQRPE-DIIVTDIGNHTLPMFGGAILQRPRRLV 418
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
TS G +G G P A+GA +A P + V GDG+ + E +PV ++ N
Sbjct: 419 TSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVEHKLPVITMVFTN 478
Query: 539 QYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
+ G N + F N F+ PD + A+A G V + D+ A+
Sbjct: 479 ESYGANWTLMNHQFGQNNWTEFMN---------PDWVGIAKAFGAYGESVRETGDIAGAL 529
Query: 599 QLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGRA 641
Q +++ P L+++ VS + + + +
Sbjct: 530 QRAIDSGKPALIEIPVSKTQGLASDPVGGVGPNLLLKGREIPV 572
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Length = 566 | Back alignment and structure |
|---|
Score = 729 bits (1884), Expect = 0.0
Identities = 139/565 (24%), Positives = 240/565 (42%), Gaps = 32/565 (5%)
Query: 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYA 127
+ GAD++V LE QGV VF PG ++ SL S+IR I RHE F A
Sbjct: 9 QWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVG 68
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT 187
R +G GV LV+SGPG +N++TG+ A S+ P++A+ G V + Q + V +
Sbjct: 69 RITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMF 128
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPS 247
+TK+ V D + ++ AF A GRPG + +P DV P
Sbjct: 129 SPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKVLPASGAPQ 188
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTM 305
+ A+ Q KLI ++KNP+ +G S+ LR+ + + IPVT T
Sbjct: 189 -----MGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQ 243
Query: 306 GLGLFPCTDE-LCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIV 364
G + VG+F + + DL++ G E + + A +V
Sbjct: 244 AAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMW--NSGNATLV 301
Query: 365 HIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP 424
HID+ + PDV + D N++ ++ + V + + Q++
Sbjct: 302 HIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRLVL-SPQAAEILRDRQHQRELLD 360
Query: 425 FSYKTFGEE-IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
+ + P ++ + ++ + + ++ +G +W ++ RARQ++ S+G
Sbjct: 361 RRGAQLNQFALHPLRIVRAMQDIVNS-DVTLTVDMGSFHIWIARYLYTFRARQVMISNGQ 419
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
+MG LP A+GA + NP VV + GDG F+ + EL V L+ + M
Sbjct: 420 QTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNGYNM 479
Query: 544 -----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI 598
+Y+ R + G D +AE+ G V + + +
Sbjct: 480 VAIQEEKKYQ-RL-----SGVEFGP--------MDFKAYAESFGAKGFAVESAEALEPTL 525
Query: 599 QLMLETPGPYLLDVMVSYQEHVVPM 623
+ ++ GP ++ + V Y+++ + M
Sbjct: 526 RAAMDVDGPAVVAIPVDYRDNPLLM 550
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Length = 573 | Back alignment and structure |
|---|
Score = 721 bits (1863), Expect = 0.0
Identities = 144/583 (24%), Positives = 235/583 (40%), Gaps = 46/583 (7%)
Query: 65 APDKPRKGADIIVEALERQGVTTVFAYPGGASIEI-HQSLTRSNIRSILPRHEQGGIFAA 123
AP A ++ L GV VF G + I + I +L RHE AA
Sbjct: 7 APSGKPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEV--EGIDFVLTRHEFTAGVAA 64
Query: 124 EGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQV-SQKLLGTDAFQEIP 182
+ AR +G P C + GPG+TN+ TG+ + D P++A+ Q S + D Q +
Sbjct: 65 DVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLD 124
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
V + M+K+ + +I ++ A A + GP I +PVD+ + P
Sbjct: 125 SVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTTVP 184
Query: 243 CKLPSCISSLP----KEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLT 296
P+ + P + + A Q L+ E+K+PVL VG + S +R
Sbjct: 185 NP-PANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERL 243
Query: 297 GIPVTCTTMGLGLFPCTDELCL-----RMVGMFGTVYANYAVNECDLLLAAGVRFNERMT 351
IPV T + G+ P EL M G+ DL+L G + E +
Sbjct: 244 NIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLR 303
Query: 352 SKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSA 411
+ K V I N I +V PDV + D S G
Sbjct: 304 PSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGA----KQRH 359
Query: 412 WREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDE----ETIISTGVGQHQMWAIQ 467
E L + ++ +T+ + + I +N + ++ E I + +G + + +
Sbjct: 360 DIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVL 419
Query: 468 FYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAE 527
F + LTS+G S G+G+PAA+GA +A P I GDG F N +L I
Sbjct: 420 FARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARL 479
Query: 528 NIPVKILLINNQYLGM-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACG 582
N+P+ +++NN G+ N+ + + + D + AEA G
Sbjct: 480 NLPIVTVVVNNDTNGLIELYQNIGHHRSH-----DPAVKFGG-------VDFVALAEANG 527
Query: 583 IPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625
+ A R T ++++ AA++ E P+L++V V+Y P
Sbjct: 528 VDATRATNREELLAALRKGAELGRPFLIEVPVNY-----DFQP 565
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Length = 563 | Back alignment and structure |
|---|
Score = 719 bits (1859), Expect = 0.0
Identities = 131/573 (22%), Positives = 227/573 (39%), Gaps = 37/573 (6%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G +++V L + GV +F G I Q+ ++ I RHE AAEGYAR+
Sbjct: 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGA 65
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIP-VVEVTRYM 190
GV LV++G G TN +T + +A+ D P+L +TG + + T+ Q V + +
Sbjct: 66 KLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPI 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCIS 250
TK + V+ + IPR++ +A A S GPVL+D+P D+ + + L S
Sbjct: 126 TKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLVL--S 183
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLG 308
+ PD L Q L L+ +++ PV+ +G + L FV TG+PV GL
Sbjct: 184 AHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADYEGLS 243
Query: 309 LFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA-TRAKIVHID 367
+ + + A DL+L G RF A+++ +D
Sbjct: 244 MLSGLPDAMRGG-LVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVD 302
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
D+ E+G+++ + I AD + D W ++ + ++ S
Sbjct: 303 PDACELGRLQGIALGIVADVGGTIEALAQATAQDAA--WPDRGDWCAKVTDLAQERYASI 360
Query: 428 KTF---GEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFG 484
+ P +A Q++ + D + +W + + L G
Sbjct: 361 AAKSSSEHALHPFHASQVIAKHVDA-GVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLG 419
Query: 485 SMGFGLPAAMGAAVANP--GAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
SMG G A+GA VA+ G + + GDGS ++ E + + +P+ ++++NNQ G
Sbjct: 420 SMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQSWG 479
Query: 543 M-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAA 597
+ R + A A G V + AA
Sbjct: 480 ATLHFQQLAVGPNRVTGTRLEN------------GSYHGVAAAFGADGYHVDSVESFSAA 527
Query: 598 IQLMLETPGPYLLDVMVS-----YQEHVVPMIP 625
+ L P ++V V+ +E ++ +
Sbjct: 528 LAQALAHNRPACINVAVALDPIPPEELILIGMD 560
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Length = 616 | Back alignment and structure |
|---|
Score = 705 bits (1821), Expect = 0.0
Identities = 177/618 (28%), Positives = 288/618 (46%), Gaps = 52/618 (8%)
Query: 52 TAPFQQTDFSSRFAPDKPR-------KGADIIVEALERQGVTTVFAYPGGASIEIHQSLT 104
+ SS P + D + LE++G+TT F PG A + ++
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMR 61
Query: 105 RSN-IRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPIL 162
+ IR IL RH +G AEGY R++ G GVCL +SGP T+++T L A +DSIPIL
Sbjct: 62 KHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPIL 121
Query: 163 AITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPV 222
ITGQ + L + FQ + + + + ++K V + +PR++++AF + SGRPGPV
Sbjct: 122 CITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPV 181
Query: 223 LIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGC 282
L+D+P DVQ+ + + LP P + + + ++++++++ PV+ GGG
Sbjct: 182 LVDLPFDVQVAEIEFDPDMYEPLP---VYKPA-ASRMQIEKAVEMLIQAERPVIVAGGGV 237
Query: 283 LNS--SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTV-YANYAVNECDLL 339
+N+ + L++F LT +PV T MG G P EL MVG+ Y N + D++
Sbjct: 238 INADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMV 297
Query: 340 LAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL- 398
G RF R T +E + KIVHIDI+ +IG+V PD+ I +DAK + +
Sbjct: 298 FGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ 357
Query: 399 ESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGV 458
E + G + W + ++K+ + PQ + +N+ + T +
Sbjct: 358 EMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGR-DVCYVTTI 416
Query: 459 GQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNL 518
G Q+ A Q + R + G +G+ +PAA+G A+P VV I GD F +
Sbjct: 417 GLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLI 476
Query: 519 QELAAIKAENIPVKILLINNQYLGM--------------NVEYEDRYFEANRANSFLGDP 564
+ELA NIP +L+NN YLG+ + +E+
Sbjct: 477 EELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEV--------- 527
Query: 565 LRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ----LMLETPGPYLLDVMVSYQEHV 620
+ D +K AE G A RV K +D+ A + LM + P +++V++
Sbjct: 528 ---NGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVIL----ER 580
Query: 621 VPMIPYDKSFKDTILEDD 638
V I + + +D
Sbjct: 581 VTNISMGSELDNVMEFED 598
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Length = 603 | Back alignment and structure |
|---|
Score = 693 bits (1790), Expect = 0.0
Identities = 131/559 (23%), Positives = 236/559 (42%), Gaps = 23/559 (4%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSL--TRSNIRSILPRHEQGGIFAAEGYAR 128
+++ LE GV ++ PGG+ I +L R I I RHE+ G AA A+
Sbjct: 12 LAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAK 71
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
+G GVC S+GPG T++M GL DA D +P+LA+ GQ + D FQE+ +
Sbjct: 72 LTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYA 131
Query: 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL-ELAVPNWNQPCKLPS 247
+ +N ++ +P +I EA A + + G ++ IPVD+ ++ +W
Sbjct: 132 DVADYNVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPAEDWYASANSYQ 190
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGL 307
+ L EPD A+ + + ++ ++ P++ G G + +EL + IP+ T
Sbjct: 191 --TPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAK 248
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
G+ L AN A+ + D++L G + SK F + ID
Sbjct: 249 GIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSK--AFKNTRYFLQID 306
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
ID ++GK D+++ ADA+ + + + + A + +
Sbjct: 307 IDPAKLGKRHKTDIAVLADAQKTLAAILAQVSEREST--PWWQANLANVKNWRAYLASLE 364
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
+ ++ +N++ + + I S VG + A + + + +TS+ F +MG
Sbjct: 365 DKQEGPLQAYQVLRAVNKIAEP-DAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMG 423
Query: 488 FGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547
G+P A+ A + P V ++ GDG M +Q+LA ++PV ++ N G ++
Sbjct: 424 VGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGF-IKD 482
Query: 548 EDRYFEANR-ANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ--LMLET 604
E N D D K A+ + A RV K + + + +
Sbjct: 483 EQEDTNQNDFIGVEFND--------IDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQ 534
Query: 605 PGPYLLDVMVSYQEHVVPM 623
P L+D +++ +
Sbjct: 535 HEPVLIDAVITGDRPLPAE 553
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Length = 568 | Back alignment and structure |
|---|
Score = 685 bits (1771), Expect = 0.0
Identities = 122/579 (21%), Positives = 224/579 (38%), Gaps = 37/579 (6%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G ++++AL+ + T++ G + + R RHEQ +AA G
Sbjct: 12 GFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEG 71
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRY 189
PGVCL S PG N +T L A ++ P++ ++G ++++ ++E+ + V R
Sbjct: 72 KPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARP 131
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCI 249
K ++ + + DIP I A A SGRPG V +D+P + +
Sbjct: 132 HCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVEEANKLLFKPID 191
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGL 307
+ + P E A+ + LI +K PV+ +G G + +E+R V TGIP M
Sbjct: 192 PAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAK 251
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTS-KLEDFATR-AKIVH 365
GL P +A+ +CD+ + G R N M K + + K V
Sbjct: 252 GLLPDNHPQS-------AAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQ 304
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF 425
IDI +NE+ + + D K + + L+ A + ++ K K
Sbjct: 305 IDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNKAKLAG 364
Query: 426 SY--KTFGEEIPPQYAIQILNELT-DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
+T + ++ ++ + + + + + R+ L S
Sbjct: 365 KMTAETPSGMMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGT 424
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
+G MG G+ + AA A G V+ ++GD +F + EL I N+PV ++++NN G
Sbjct: 425 WGVMGIGMGYCVAAA-AVTGKPVIAVEGDSAFGFSGMELETICRYNLPVTVIIMNNG--G 481
Query: 543 M-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAA 597
+ + + L EA G +++AA
Sbjct: 482 IYKGNEADPQPGVI-----SCTRLTR--------GRYDMMMEAFGGKGYVANTPAELKAA 528
Query: 598 IQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILE 636
++ + + P L++ M+ V + + +
Sbjct: 529 LEEAVASGKPCLINAMIDPDAGVESGRIKSLNVVSKVGK 567
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Length = 564 | Back alignment and structure |
|---|
Score = 668 bits (1725), Expect = 0.0
Identities = 122/576 (21%), Positives = 235/576 (40%), Gaps = 49/576 (8%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
G IIVEAL++ + T++ G ++ + IR I RHEQ +AA +
Sbjct: 10 GMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQ 69
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRY 189
PG+CL S PG N +T L +A + P++ I+G + ++ ++E+ + +
Sbjct: 70 KPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKP 129
Query: 190 MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLEL--AVPNWNQPCKLPS 247
K + V D+ + A ++ SGRPG V +D+P +V K+ +
Sbjct: 130 YAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKVEN 189
Query: 248 CISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTM 305
S P ++ + L+ +++ P++ +G G S E+LR+F+ IP +M
Sbjct: 190 --PSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSM 247
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVH 365
G+ T L ++A+ D+++ G R N + + +A + +
Sbjct: 248 AKGILEDTHPLS-------AAAARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQ 300
Query: 366 IDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF 425
+DI+ EI + V + D M L+ WR+ L+ K++
Sbjct: 301 LDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFT---TPLVWRDILNIHKQQNAQ 357
Query: 426 SYKTFGEE----IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQ-FYMYKRARQLLTS 480
+ A+ + ++ + + I G + + + + R+ L
Sbjct: 358 KMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDC 417
Query: 481 SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540
+G MG G+ A+GA+V G+ VV I+GD +F + E+ I N+PV I++ NN
Sbjct: 418 GTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNG- 475
Query: 541 LGM------NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV 594
G+ ++ + + L K +A VT ++
Sbjct: 476 -GIYRGDGVDLSGAGAP-----SPTDLLHH-------ARYDKLMDAFRGVGYNVTTTDEL 522
Query: 595 RAAIQLMLETPGPYLLDVMVSYQ-----EHVVPMIP 625
R A+ +++ P +++V++ H+ + P
Sbjct: 523 RHALTTGIQSRKPTIINVVIDPAAGTESGHITKLNP 558
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Length = 590 | Back alignment and structure |
|---|
Score = 667 bits (1723), Expect = 0.0
Identities = 123/566 (21%), Positives = 224/566 (39%), Gaps = 27/566 (4%)
Query: 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR--SNIRSILPRHEQGGIFAAE 124
D +++ LE G T++ P G + ++ +N++ + +HE+ G AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 125 GYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVV 184
++ G GV + S GPG ++++ GL DA D+IP++AI G Q+ L DAFQE+
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 185 EVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELA--VPNWNQP 242
+ ++ +N V + +P+++ EA +A + R G ++++P D ++
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYSSA 179
Query: 243 CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTC 302
L P P + ++L+ SK PV+ G G + +++ PV
Sbjct: 180 NSLR---KYAPIAPAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVIT 236
Query: 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRF-NERMTSKLEDFATRA 361
T F E G AN + E D +L AG F + F
Sbjct: 237 TGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGT---FRNVD 293
Query: 362 KIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKK 421
+ IDID +GK DV+I DA L + + +++ ++A + + ++
Sbjct: 294 NFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAVEES--AWWTANLKNIANWRE 351
Query: 422 KYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSS 481
++ +N D+ + I S VG +I+ TS
Sbjct: 352 YINMLETKEEGDLQFYQVYNAINNHADE-DAIYSIDVGNSTQTSIRHLHMTPKNMWRTSP 410
Query: 482 GFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYL 541
F +MG +P +GA P V +I GDG+F M ++ N+PV ++ +N
Sbjct: 411 LFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNTEY 470
Query: 542 GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLM 601
++ + N D D K AEA G V++ +D+ +
Sbjct: 471 AF-IKNKYEDTNKNLFGVDFTD--------VDYAKIAEAQGAKGFTVSRIEDMDRVMAEA 521
Query: 602 LET---PGPYLLDVMVSYQEHVVPMI 624
+ ++D ++ +
Sbjct: 522 VAANKAGHTVVIDCKITQDRPIPVET 547
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Length = 549 | Back alignment and structure |
|---|
Score = 658 bits (1701), Expect = 0.0
Identities = 157/556 (28%), Positives = 246/556 (44%), Gaps = 24/556 (4%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYAR 128
+ A I + LE GV ++ G + + SL R I + RHE+ FAA A+
Sbjct: 3 QTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQ 62
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
SG VC S GPG +++ GL D + + +P+LAI + +G+ FQE E+ R
Sbjct: 63 LSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFR 122
Query: 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSC 248
+ + LV + IP+++ A A R G ++ +P DV L+ A +
Sbjct: 123 ECSHYCELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGA----TMHWY 177
Query: 249 ISSLPK-EPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGL 307
+ P P+E LR+ +L+ S N L G GC + +EL +F G P+ G
Sbjct: 178 HAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRGK 237
Query: 308 GLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
+ + M G+ G + + D L+ G +F R + T AKI+ ID
Sbjct: 238 EHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAF-----YPTDAKIIQID 292
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
I+ IG D+++ D K + ++E K E+ + +K
Sbjct: 293 INPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADR--KFLDKALEDYRDARKGLDDLA 350
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
K + I PQY Q ++ D + I + VG +WA ++ R+LL S GSM
Sbjct: 351 KPSEKAIHPQYLAQQISHFAAD-DAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMA 409
Query: 488 FGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEY 547
+P A+GA P VV + GDG F M + + ++ +PVKI++ NN LG V
Sbjct: 410 NAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGF-VAM 468
Query: 548 EDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGP 607
E + + L D + + AEACGI RV K +V A+Q GP
Sbjct: 469 EMKAGGYLTDGTELHD--------TNFARIAEACGITGIRVEKASEVDEALQRAFSIDGP 520
Query: 608 YLLDVMVSYQEHVVPM 623
L+DV+V+ +E +P
Sbjct: 521 VLVDVVVAKEELAIPP 536
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Length = 528 | Back alignment and structure |
|---|
Score = 652 bits (1684), Expect = 0.0
Identities = 105/557 (18%), Positives = 198/557 (35%), Gaps = 47/557 (8%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARS 129
E L RQG+ TVF PG ++ + + R IL E + A+GYA++
Sbjct: 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDF-PEDFRYILALQEACVVGIADGYAQA 60
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAF-QEIPVVEVTR 188
S P + S G N M L +A++ P++ GQ ++ ++G +A + + R
Sbjct: 61 SRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPR 120
Query: 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSC 248
+ K +Y ++P + A +A+ GPV + +P D + A P
Sbjct: 121 PLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQS-HHLFDRH- 178
Query: 249 ISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTT-M 305
S ++ L +K + + NP + +G + + + PV
Sbjct: 179 -VSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSA 237
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAG---VRFNERMTSKLEDFATRAK 362
FP ++ G + + D++L G R+++ + +
Sbjct: 238 PRCPFPTRHPCFRGLMPA-GIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQY--LKPGTR 294
Query: 363 IVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKK 422
++ + D E + + D +I AD + + + ++E
Sbjct: 295 LISVTCDPLEAARAPMGD-AIVADIGAMASALANLVE------------ESSRQLPTAAP 341
Query: 423 YPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
P + P+ LN++ + I Q + +
Sbjct: 342 EPAKVDQDAGRLHPETVFDTLNDMAPE-NAIYLNESTSTTAQMWQRLNMRNPGSYYFCAA 400
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
G +GF LPAA+G +A P V+ + GDGS ++ L NIP +++NN G
Sbjct: 401 -GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYG 459
Query: 543 M-----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAA 597
V + + D A+ G+ A + + ++ +
Sbjct: 460 ALRWFAGVLEAENV-----PGLDVPG--------IDFRALAKGYGVQALKADNLEQLKGS 506
Query: 598 IQLMLETPGPYLLDVMV 614
+Q L GP L++V
Sbjct: 507 LQEALSAKGPVLIEVST 523
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Length = 565 | Back alignment and structure |
|---|
Score = 620 bits (1601), Expect = 0.0
Identities = 117/594 (19%), Positives = 211/594 (35%), Gaps = 51/594 (8%)
Query: 51 STAPFQQTDFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IR 109
++ S K A+ ++ AL+ +G +F PG ++ + + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILP 61
Query: 110 SILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVS 169
HE FAA+ AR S T GV V+ G G N++ + AY++ P++ I+G
Sbjct: 62 LHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPG 121
Query: 170 QKLL--GTDAFQEIPVVEVTRYM----TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVL 223
G + ++ + T + D P I A + PV
Sbjct: 122 TTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAAR-AQSRPVY 180
Query: 224 IDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL 283
++IP ++ P + P ++ + L + + +PVL V
Sbjct: 181 LEIPRNMVNAEVEPVGDDPAWPV------DRDALAACADEVLAAMRSATSPVLMVCVEVR 234
Query: 284 NS--SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLL 340
++ + G+PV T MG GL L +G+ G V E D L
Sbjct: 235 RYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLF 294
Query: 341 AAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400
G ++ + + K +H + +G D+ + + R+
Sbjct: 295 LLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLGYHTYADIPLAGLVDALLERLP----- 349
Query: 401 KGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELT--DDEETIISTGV 458
+ R ++ YP + GE I P + +N+ E +I+ +
Sbjct: 350 ---------PSDRTTRGKEPHAYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADM 400
Query: 459 GQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNL 518
G A+ L+ + MGFG+PA +GA + G ++ + GDG+F M
Sbjct: 401 GDCLFTAMDMI----DAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTG 456
Query: 519 QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFA 578
EL + I ++L NN M + R F+ A + L D A
Sbjct: 457 WELGNCRRLGIDPIVILFNNASWEM-L----RTFQPESAFNDLDD--------WRFADMA 503
Query: 579 EACGIPAARVTKKKDVRAAIQLMLETPG-PYLLDVMVSYQEHVVPMIPYDKSFK 631
G RV + +++AA+ T G L++ M+ + + + K
Sbjct: 504 AGMGGDGVRVRTRAELKAALDKAFATRGRFQLIEAMIPRGVLSDTLARFVQGQK 557
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Length = 566 | Back alignment and structure |
|---|
Score = 508 bits (1310), Expect = e-175
Identities = 109/584 (18%), Positives = 204/584 (34%), Gaps = 56/584 (9%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARS 129
+ E L + G+ FA G ++ + L + +++ I +E F+AEGYARS
Sbjct: 4 TVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARS 63
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEI-------- 181
+G +V+ G + M L AY++++P++ I+G + GT
Sbjct: 64 NGA-AAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYS 122
Query: 182 PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQ 241
+E+ R +T + D P I A R P +DI ++ E V
Sbjct: 123 YQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERK-PAYLDIACNIASEPCVRPGPV 181
Query: 242 PCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIP 299
L + + A+ T+ L+ +S +PV+ +G N+
Sbjct: 182 SSLLSE--PEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCA 239
Query: 300 VTCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA 358
VT G FP + G V D LL FN+ T +
Sbjct: 240 VTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWP 299
Query: 359 TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE 418
++ + D + ++ + + ++ SA + +
Sbjct: 300 KGPNVILAEPDRVTVDGRAYDGFTL----RAFLQALAEKAPAR------PASAQKSSVPT 349
Query: 419 QKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
+ ++ +N L T + G A++ + + AR +
Sbjct: 350 CSLTATSD----EAGLTNDEIVRHINALLT-SNTTLVAETGDSWFNAMRMTLPRGAR-VE 403
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
+G +G+ +P+A G A+ + V + GDGSF + QE+A + +PV I LINN
Sbjct: 404 LEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINN 463
Query: 539 QYLGMNVE-YEDRYFEANRANSFLGDPLRKSEIF-PDMLKFAEACGIP-----AARVTKK 591
+ + + ++ Y + I D E + T
Sbjct: 464 RGYVIEIAIHDGPY----------------NYIKNWDYAGLMEVFNAGEGHGLGLKATTP 507
Query: 592 KDVRAAIQLMLE-TPGPYLLDVMVSYQEHVVPMIPYDKSFKDTI 634
K++ AI T GP L++ + + ++ + + T
Sbjct: 508 KELTEAIARAKANTRGPTLIECQIDRTDCTDMLVQWGRKVASTN 551
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Length = 552 | Back alignment and structure |
|---|
Score = 502 bits (1295), Expect = e-173
Identities = 106/580 (18%), Positives = 202/580 (34%), Gaps = 64/580 (11%)
Query: 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGY 126
P AD +++ L G +F PG +++ + S +I + +E +AA+GY
Sbjct: 3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGY 62
Query: 127 ARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQK----------LLGTD 176
AR G L + G G + M G+ +Y++ +P+L I G LG
Sbjct: 63 ARCKGF-AALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDG 121
Query: 177 AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAV 236
F+ ++ +T ++ + + I + + RPG +++ P DV + A
Sbjct: 122 EFRHF--YHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLML--PADVAKKAAT 177
Query: 237 PNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVG 294
P L + + + SK L L L+K+V
Sbjct: 178 P---PVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVK 234
Query: 295 LTGIPVTCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSK 353
+ MG G+F G T A+ D +L G RF + +T+
Sbjct: 235 EVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAG 294
Query: 354 LEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWR 413
T A+ + + + +G V + + + +
Sbjct: 295 FTHQLTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQ-------------HVHA 341
Query: 414 EELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKR 473
+ PF + + + L II G AI +
Sbjct: 342 GLMSSSSGAIPFPQP--DGSLTQENFWRTLQTFIR-PGDIILADQGTSAFGAIDLRLPAD 398
Query: 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533
+ +GS+G+ L AA GA A P V+ + GDG+ + +QEL ++ + I
Sbjct: 399 -VNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPII 457
Query: 534 LLINNQYLGMNV---EYEDRYFEANRANSFLGDPLRKSEI-FPDMLKFAEACGIP----A 585
L++NN+ + E RY ++I + +A +
Sbjct: 458 LVLNNEGYTVERAIHGAEQRY----------------NDIALWNWTHIPQALSLDPQSEC 501
Query: 586 ARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIP 625
RV++ + + ++ + L++VM+ + + P++
Sbjct: 502 WRVSEAEQLADVLEKVAHHERLSLIEVMLP-KADIPPLLG 540
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Length = 568 | Back alignment and structure |
|---|
Score = 502 bits (1295), Expect = e-172
Identities = 108/586 (18%), Positives = 203/586 (34%), Gaps = 54/586 (9%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSS 130
+ E L + G+ FA G ++ + +L + N+ + +E F+AEGYAR+
Sbjct: 5 VGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAK 64
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVS-----QKLLGTDAFQEI---P 182
G +V+ G + + AY++++P++ I+G + + A +
Sbjct: 65 GA-AAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
+E+ + +T + ++ P I A + PV ++I ++
Sbjct: 124 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKK-PVYLEIACNIASMPCAAPGPAS 182
Query: 243 CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPV 300
S + A+ +TLK I + VG + E KF G V
Sbjct: 183 ALFNDEAS--DEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAV 240
Query: 301 TCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT 359
FP + + G + E D ++A FN+ T+ D
Sbjct: 241 ATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPD 300
Query: 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQ 419
K+V + S + ++ P V + K R+ + K + + L+
Sbjct: 301 PKKLVLAEPRSVVVNGIRFPSVHL----KDYLTRLAQKVSKKTGAL-----DFFKSLNAG 351
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
+ K + + + L T + G A Q ++
Sbjct: 352 ELKKAAPADP-SAPLVNAEIARQVEALLT-PNTTVIAETGDSWFNA-QRMKLPNGARVEY 408
Query: 480 SSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539
+G +G+ +PAA G AV P + + GDGSF + QE+A + +PV I LINN
Sbjct: 409 EMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNY 468
Query: 540 YLGMNVE-YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEA---------CGIPAARVT 589
+ V ++ Y N N D E +
Sbjct: 469 GYTIEVMIHDGPY--NNIKN-------------WDYAGLMEVFNGNGGYDSGAGKGLKAK 513
Query: 590 KKKDVRAAIQLMLETP-GPYLLDVMVSYQEHVVPMIPYDKSFKDTI 634
++ AI++ L GP L++ + ++ ++ + K
Sbjct: 514 TGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAAN 559
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Length = 570 | Back alignment and structure |
|---|
Score = 490 bits (1264), Expect = e-168
Identities = 101/609 (16%), Positives = 215/609 (35%), Gaps = 69/609 (11%)
Query: 52 TAPFQQTDFSSRFAPDKPR-----KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR- 105
+ SS P D +++ L G+ +F PG +++ +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISR 61
Query: 106 SNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT 165
+++ I +E + A+GYAR+ L + G G + + GL +Y++++P++ I
Sbjct: 62 EDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSAINGLAGSYAENLPVVEIV 120
Query: 166 GQVSQKLLGTDAFQEI--------PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217
G + K+ F +++ +T L+ + I + +
Sbjct: 121 GSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTAENATYEIDRVLSQLL--K 178
Query: 218 RPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPD----ELALRQTLKLIVESKN 273
PV I++PVDV + P+ ++ L + + + ++
Sbjct: 179 ERKPVYINLPVDVA--------AAKAEKPALSLEKESSTTNTTEQVILSKIEESLKNAQK 230
Query: 274 PVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRM-VGMFGTVYAN 330
PV+ G ++ + + +FV T +P+T G + L + G +
Sbjct: 231 PVVIAGHEVISFGLEKTVTQFVSETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLK 290
Query: 331 YAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLV 390
V D +L GV+ + T K++ ++ID I + D D + V
Sbjct: 291 NFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIFNKVVEDF----DFRAV 346
Query: 391 FNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDE 450
+ ++ + + + + +Q +++ S + Q + LT
Sbjct: 347 VSSLSELKGIE---------YEGQYIDKQYEEFIPS----SAPLSQDRLWQAVESLTQ-S 392
Query: 451 ETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG 510
I G A ++ +R + +GS+G+ PAA+G+ +A+ + + G
Sbjct: 393 NETIVAEQGTSFFGASTIFLKSNSR-FIGQPLWGSIGYTFPAALGSQIADKESRHLLFIG 451
Query: 511 DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEI 570
DGS + +QEL E + +INN + E N
Sbjct: 452 DGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYNDIPM----------- 500
Query: 571 FPDMLKFAEACGIPAAR-----VTKKKDVRAAIQLMLETP-GPYLLDVMVSYQEHVVPMI 624
+ K E G R V + + + ++ Y +++++ ++ +
Sbjct: 501 -WNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWIELVLEKEDAPKLLK 559
Query: 625 PYDKSFKDT 633
K F +
Sbjct: 560 KMGKLFAEQ 568
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Length = 563 | Back alignment and structure |
|---|
Score = 484 bits (1248), Expect = e-165
Identities = 96/574 (16%), Positives = 189/574 (32%), Gaps = 50/574 (8%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-NIRSILPRHEQGGIFAAEGYARSS 130
+ E L++ V TVF PG ++ + + +R +E +AA+GYAR
Sbjct: 6 LGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIK 65
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE--------IP 182
G + + G G + + G+ +Y++ + +L + G S
Sbjct: 66 GM-SCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTV 124
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
++ +++ ++ D+ P I + PV + +P ++ Q
Sbjct: 125 FHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQ-RPVYLGLPANLVDLNVPAKLLQT 183
Query: 243 CKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPV 300
S + + E + L L ++KNPV+ C E +K + LT P
Sbjct: 184 PIDMSLKPNDAESEKE-VIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPA 242
Query: 301 TCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT 359
T MG G + VG AV DL+L+ G ++ T
Sbjct: 243 FVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYK 302
Query: 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQ 419
IV D +I P V + + + + D + + +
Sbjct: 303 TKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIA------------DAAKGYKPVAVP 350
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLT 479
+ + + ++ L E ++ G Q + ++
Sbjct: 351 ARTPANAAVPASTPLKQEWMWNQLGNFL-QEGDVVIAETGTSAFGINQTT-FPNNTYGIS 408
Query: 480 SSGFGSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILL 535
+GS+GF A +GAA A +P V+ GDGS + +QE++ + + + +
Sbjct: 409 QVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFV 468
Query: 536 INNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP---AARVTKKK 592
+NN + + + + D L G RV
Sbjct: 469 LNNDGYTI----QKLIHGPKAQYNEIQG--------WDHLSLLPTFGAKDYETHRVATTG 516
Query: 593 DVRAAIQ--LMLETPGPYLLDVMVSYQEHVVPMI 624
+ Q + +++VM+ + ++
Sbjct: 517 EWDKLTQDKSFNDNSKIRMIEVMLPVFDAPQNLV 550
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Length = 556 | Back alignment and structure |
|---|
Score = 362 bits (932), Expect = e-118
Identities = 85/568 (14%), Positives = 176/568 (30%), Gaps = 49/568 (8%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYAR 128
R+ A +I+EAL R GV + PG S + + S E+G A G A+
Sbjct: 8 RRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAK 67
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
S P +V+SG V N+ L++A ++ +T +L+ A Q I +
Sbjct: 68 VSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFA 127
Query: 189 YMTKHNY-LVLDVDDIPR--IIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK- 244
H+ L DIP ++ + G V I+ P L + + +
Sbjct: 128 SHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGEMDDTGLSWQQ 187
Query: 245 -----LPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIP 299
L + P + +Q K V+ G +++ + G P
Sbjct: 188 RLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQTLGWP 247
Query: 300 VTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT 359
+ + P G A + + +++ G + + +
Sbjct: 248 LIGDVLSQTGQPLPC-----ADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCE 302
Query: 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQ 419
+ +D + + A+ W E+
Sbjct: 303 PEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAE----------KRQPWCVEIPRL 352
Query: 420 KKKYPFSYKTFGEEIPPQYAIQILNE-LTDDEETIISTGVGQHQMWAIQFYMYKRARQLL 478
++ + + + + L + + + + + A +
Sbjct: 353 AEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDA--LSQLPAGYPVY 410
Query: 479 TSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINN 538
++ G + L A G A G + I GD S + +L LA ++ + P+ ++++NN
Sbjct: 411 SNRGASGIDGLLSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNN 469
Query: 539 Q------YLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK 592
L +R++ P A + R +
Sbjct: 470 NGGQIFSLLPTPQSERERFYLM---------PQN-----VHFEHAAAMFELKYHRPQNWQ 515
Query: 593 DVRAAIQLMLETPGPYLLDVMVSYQEHV 620
++ A TP +++++V+ +
Sbjct: 516 ELETAFADAWRTPTTTVIEMVVNDTDGA 543
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Length = 578 | Back alignment and structure |
|---|
Score = 350 bits (900), Expect = e-113
Identities = 91/571 (15%), Positives = 179/571 (31%), Gaps = 37/571 (6%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYAR 128
+E L + GV PG S + + ++ + E+ F A G A+
Sbjct: 11 TDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAK 70
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
+S P V L +SG N + +A IP++ +T +L A Q + + +
Sbjct: 71 ASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYG 130
Query: 189 YMTKHNYLVLDVDDIP-------RIIKEAFFIATSGRPGPVLIDIPVDVQLELAV---PN 238
K + ++ A IA GPV ++ P+ L + P
Sbjct: 131 SHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLREPLVPILEPSPF 190
Query: 239 WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS-SEELRKFVGLTG 297
K E + + Q + K V VG + + G
Sbjct: 191 TATGKKHHHVHIYYTHEVLDDSSIQKMVTECTGKKGVFVVGPIDKKELEQPMVDLAKKLG 250
Query: 298 IPVTCTTM-GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLED 356
P+ + GL + DE+ + F ++++ G + +
Sbjct: 251 WPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLE 310
Query: 357 FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREEL 416
+ + +D + +K I D + + + M + +AW
Sbjct: 311 QLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDAK-----DAAWLNGW 365
Query: 417 HEQKKKYPFSYKTFGEEIPPQYAIQILNELTD--DEETIISTGVGQHQMWAIQFYM-YKR 473
K +I+ EL ++ + G ++ +
Sbjct: 366 TSYNKVAREIVLAEMANTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQIDK 425
Query: 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKI 533
++L + G + + +A+GA+V + + GD SF ++ L K + + I
Sbjct: 426 KIKMLANRGANGIDGVVSSALGASVV--FQPMFLLIGDLSFYHDMNGLLMAKKYKMNLTI 483
Query: 534 LLINNQYLGM----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589
+++NN G+ E +YFE+ G D A
Sbjct: 484 VIVNNDGGGIFSFLPQANEPKYFES-----LFGTSTE-----LDFRFAAAFYDADYHEAK 533
Query: 590 KKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620
++ AI G +++V + E+
Sbjct: 534 SVDELEEAIDKASYHKGLDIIEVKTNRHENK 564
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Length = 604 | Back alignment and structure |
|---|
Score = 307 bits (789), Expect = 1e-96
Identities = 93/568 (16%), Positives = 184/568 (32%), Gaps = 37/568 (6%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-SNIRSILPRHEQGGIFAAEGYARSSG 131
++ G+T PG S + +I + E+ F A G A++
Sbjct: 34 IGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQ 93
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMT 191
P + + +SG N +++A+ +PI+ +T +L A Q I +
Sbjct: 94 RPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFV 153
Query: 192 KHNYLVLDVDDIP-------RIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQPCK 244
K ++ P + A A GPV +++P+ L + +
Sbjct: 154 KFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLREPLMPDLSDEPFGRM 213
Query: 245 LPSC---ISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS-SEELRKFVGLTGIPV 300
+ + + D +L +++ E++ ++ G ++ E + P+
Sbjct: 214 RTGRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPI 273
Query: 301 TCTTM-GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT 359
+ L + F D+++ G +
Sbjct: 274 LADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLRPDVVIRFGPMPVSKPVFLWLKDDP 333
Query: 360 RAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQ 419
+ + ID D + I +A + + L + S W E+
Sbjct: 334 TIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAAT-----RSSEWLEKWQFV 388
Query: 420 KKKYPFSYKTFGEEIP--PQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYK-RARQ 476
++ +T E +IL L + + + G F+ + R +
Sbjct: 389 NGRFREHLQTISSEDVSFEGNLYRILQHLVPE-NSSLFVGNSMPIRDVDTFFEKQDRPFR 447
Query: 477 LLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536
+ ++ G + + +AMG A V + GD SF +L L A K IP+ ++L+
Sbjct: 448 IYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHDLNGLLAAKKLGIPLTVILV 506
Query: 537 NNQYLGM----NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKK 592
NN G+ E +FE G P D A G +
Sbjct: 507 NNDGGGIFSFLPQASEKTHFE-----DLFGTPTG-----LDFKHAAALYGGTYSCPASWD 556
Query: 593 DVRAAIQLMLETPGPYLLDVMVSYQEHV 620
+ + A + PG +L+++ Q V
Sbjct: 557 EFKTAYAPQADKPGLHLIEIKTDRQSRV 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 2e-11
Identities = 71/560 (12%), Positives = 145/560 (25%), Gaps = 219/560 (39%)
Query: 182 PVVEVTRYMTKHNYLVLDVD-----DIPRI-----IKEAF-------FIATSGRPG---- 220
P + Y+ + + L D ++ R+ +++A + G G
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 221 ----PVLIDIPVDVQLELAV--------------------------PNWNQPCKLPSCIS 250
V + V +++ + PNW S I
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 251 SLPKEPDELALRQTLKLIVESKNPVLCVGGGCL------NSSEELRKFVGLTGIPVTC-- 302
L + LR +L+ CL +++ F ++C
Sbjct: 225 -LRIHSIQAELR---RLLKSKPYE------NCLLVLLNVQNAKAWNAF------NLSCKI 268
Query: 303 --TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATR 360
TT + TD L + +++ + L
Sbjct: 269 LLTTRFKQV---TDFLS-------AATTTHISLDHHSMT------LTPDEVKSL--LL-- 308
Query: 361 AKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGF-MFDFSAWREELHEQ 419
K + LP + +++I ES G +D W+ ++
Sbjct: 309 -KYLDCRPQ-------DLP-REVLTTNPRR---LSIIAESIRDGLATWDN--WKHVNCDK 354
Query: 420 KKK---------YPFSYKT-------FGEE--IPPQYAIQIL--NELTDDEETIISTGVG 459
P Y+ F IP + ++ + + D +++
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIWFDVIKSDVMVVVN---- 409
Query: 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS--FIMN 517
+L S +V+ S I +
Sbjct: 410 ----------------KLHKYS-----------------------LVEKQPKESTISIPS 430
Query: 518 LQELAAIKAENIPV--KILLINNQYL--------GMNVEYEDRYFEANRANSFLG----- 562
+ +K EN + ++ + Y + Y D+YF S +G
Sbjct: 431 IYLELKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYF-----YSHIGHHLKN 483
Query: 563 -DPLRKSEIFPDM---LKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL--LDVMVSY 616
+ + +F + +F E K +R G L L + Y
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQ-----------K-IRHD-STAWNASGSILNTLQQLKFY 530
Query: 617 QEHVVPMIPYDKSFKDTILE 636
+ ++ P + + IL+
Sbjct: 531 KPYICDNDPKYERLVNAILD 550
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 7e-04
Identities = 78/513 (15%), Positives = 141/513 (27%), Gaps = 184/513 (35%)
Query: 92 PGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCL-----VSSGPGVTN 146
P S H S + I SI + E + ++ Y CL V +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYEN-------CLLVLLNVQN------ 255
Query: 147 IMTGLMDAYSDSIPILAITGQVS-QKLLGTDAFQEIPVVEVTRYMTKH-------NYLVL 198
+A++ S IL T L I + + +T YL
Sbjct: 256 --AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 199 DVDDIPRIIKEAF-----FIATSGRPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLP 253
D+PR + IA S R G D NW
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWD------------NW-------------- 347
Query: 254 KEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRK-FVGLT----GIPVTCTTMGLG 308
K + L ++ + P E RK F L+ + + L
Sbjct: 348 KHVNCDKLTTIIESSLNVLEP------------AEYRKMFDRLSVFPPSAHIPTILLSL- 394
Query: 309 LFPCTDELCLRMVGMFGTVYANYAVNEC-DLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
++ + + +V VN+ L + + T + ++++
Sbjct: 395 IWFDVIKSDVMVV-----------VNKLHKYSLVE--KQPKESTISIPS-------IYLE 434
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSY 427
+ KVKL + + L +R I++ + FD + + +Y +S+
Sbjct: 435 L------KVKLEN-----EYAL--HRS--IVDHYNIPKTFD---SDDLIPPYLDQYFYSH 476
Query: 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMG 487
+G H R + F
Sbjct: 477 ------------------------------IGHHLKNIEHPERMTLFRMVFLDFRF---- 502
Query: 488 FGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIK---AENIP-----VKIL----- 534
+ + + + GS + LQ+L K +N P V +
Sbjct: 503 ------LEQKIRHDS---TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 535 -----LINNQY-----LGMNVEYEDRYFEANRA 557
LI ++Y + + E E + EA++
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
|
| >3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri} Length = 170 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-05
Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 241 QPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSS--EELRKFVGLTGI 298
+ +S P+ A K+I ++K P+L VG L+ + + K I
Sbjct: 9 KLFTSYGVNTSKAVSPEMAA-----KIISKAKRPLLMVGTLALDPELLDRVVKISKAANI 63
Query: 299 PVTCTTMGLGLFPCTDE----LCLRMVGMFGTVYANYAVN---ECDLLLAAGVRFN--ER 349
P+ T L + D + M+G + T ++ D+++ G + +
Sbjct: 64 PIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITIGFKKFYINQ 123
Query: 350 MTSKLEDFATRAKIVHID 367
+ S ++F+ K + I+
Sbjct: 124 VLSAAKNFSN-LKTIAIE 140
|
| >1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6 Length = 174 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 3e-04
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 12/127 (9%)
Query: 253 PKEPDELALRQTL-KLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT------M 305
PK L + + +I ++K P+L VG + E K I V T +
Sbjct: 16 PKMATLLEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFI 75
Query: 306 GLGLFPCTDELCLRMVGMFGTVYANYAVN---ECDLLLAAGVRFN--ERMTSKLEDFATR 360
GL + L + F + DL+L G + +M + +++FA
Sbjct: 76 DAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPH 135
Query: 361 AKIVHID 367
+ + ID
Sbjct: 136 IRALAID 142
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 643 | |||
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 100.0 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 100.0 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 100.0 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 100.0 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 100.0 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 100.0 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 100.0 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 100.0 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 100.0 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 100.0 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 100.0 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 100.0 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 100.0 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 100.0 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 100.0 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 100.0 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 100.0 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 100.0 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 100.0 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 100.0 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 100.0 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 100.0 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 99.86 | |
| 3cf4_G | 170 | Acetyl-COA decarboxylase/synthase epsilon subunit; | 99.8 | |
| 1ytl_A | 174 | Acetyl-COA decarboxylase/synthase complex epsilon | 99.72 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 99.66 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 99.64 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 99.64 | |
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 99.62 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 99.62 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 99.6 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 99.57 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 99.56 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 99.56 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 99.56 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 99.56 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 99.54 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 99.53 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 99.53 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 99.52 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 99.52 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 99.51 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 99.43 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 99.14 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 99.08 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 98.94 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 98.83 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 98.75 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 98.15 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 97.41 | |
| 1umd_B | 324 | E1-beta, 2-OXO acid dehydrogenase beta subunit; al | 95.68 | |
| 2bfd_B | 342 | 2-oxoisovalerate dehydrogenase beta subunit; oxido | 95.3 | |
| 1qs0_B | 338 | 2-oxoisovalerate dehydrogenase beta-subunit; heter | 95.15 | |
| 1w85_B | 324 | Pyruvate dehydrogenase E1 component, beta subunit; | 94.98 | |
| 1s5p_A | 235 | NAD-dependent deacetylase; protein deacetylase, SI | 94.93 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 94.77 | |
| 2ozl_B | 341 | PDHE1-B, pyruvate dehydrogenase E1 component subun | 94.57 | |
| 3glr_A | 285 | NAD-dependent deacetylase sirtuin-3, mitochondria; | 94.55 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 94.39 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 94.3 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 94.29 | |
| 1j8f_A | 323 | SIRT2, sirtuin 2, isoform 1, silencing INFO; gene | 94.2 | |
| 1q1a_A | 289 | HST2 protein; ternary complex, histone deacetylase | 93.83 | |
| 1yc5_A | 246 | NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, | 93.81 | |
| 1ma3_A | 253 | SIR2-AF2, transcriptional regulatory protein, SIR2 | 93.69 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 93.57 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 93.55 | |
| 1m2k_A | 249 | Silent information regulator 2; protein-ligand com | 93.53 | |
| 1efv_A | 315 | Electron transfer flavoprotein; electron transport | 93.49 | |
| 3c2q_A | 345 | Uncharacterized conserved protein; putative LOR/SD | 93.43 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 93.28 | |
| 1ik6_A | 369 | Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o | 93.13 | |
| 1o97_D | 320 | Electron transferring flavoprotein alpha-subunit; | 93.1 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 93.06 | |
| 3k35_A | 318 | NAD-dependent deacetylase sirtuin-6; rossmann fold | 92.97 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 92.95 | |
| 3riy_A | 273 | NAD-dependent deacetylase sirtuin-5; desuccinylase | 92.92 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 92.83 | |
| 2hjh_A | 354 | NAD-dependent histone deacetylase SIR2; protein, s | 92.83 | |
| 3pki_A | 355 | NAD-dependent deacetylase sirtuin-6; ADP ribose, s | 92.77 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 92.75 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 92.74 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 92.74 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 92.68 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 92.61 | |
| 1q14_A | 361 | HST2 protein; histone deacetylase, hydrolase; 2.50 | 92.5 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 92.43 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 91.6 | |
| 1efp_A | 307 | ETF, protein (electron transfer flavoprotein); ele | 91.47 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 91.24 | |
| 1djl_A | 207 | Transhydrogenase DIII; rossmann fold dinucleotide | 91.17 | |
| 1pno_A | 180 | NAD(P) transhydrogenase subunit beta; nucleotide b | 91.04 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 90.81 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 90.71 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 90.68 | |
| 4iao_A | 492 | NAD-dependent histone deacetylase SIR2; protein co | 90.31 | |
| 2fsv_C | 203 | NAD(P) transhydrogenase subunit beta; NAD(P) trans | 90.19 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 90.17 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 90.14 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 89.98 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 89.95 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 89.81 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 89.49 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 88.91 | |
| 2bru_C | 186 | NAD(P) transhydrogenase subunit beta; paramagnetic | 88.88 | |
| 3u31_A | 290 | SIR2A, transcriptional regulatory protein SIR2 hom | 88.71 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 88.63 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 88.52 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 88.51 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 88.2 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 88.14 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 88.07 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 87.49 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 87.22 | |
| 2iv2_X | 715 | Formate dehydrogenase H; oxidoreductase, 4Fe-4S, a | 85.24 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 85.06 | |
| 1d4o_A | 184 | NADP(H) transhydrogenase; nucleotide-binding fold, | 85.06 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 82.14 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 82.04 | |
| 3i9v_3 | 783 | NADH-quinone oxidoreductase subunit 3; electron tr | 81.93 |
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-101 Score=884.38 Aligned_cols=555 Identities=41% Similarity=0.682 Sum_probs=490.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++++|++.|+++||++|||+||+.+++|+++|.+.+ |++|.+|||++|+|||+||||+||||+||++|+|||++|+
T Consensus 81 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~ 160 (677)
T 1t9b_A 81 GLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNV 160 (677)
T ss_dssp TCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHH
Confidence 579999999999999999999999999999999998766 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
++||++|+.+++|||+||||+++..+++++||++||..+++++|||++++.+++++++.+++||+.|+++|+|||||+||
T Consensus 161 ~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 161 VTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCCCCCC---CCC--CCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch---hhHHHHHHHHHHhCCc
Q 040733 228 VDVQLELAVPNWNQPCKLPSC---ISS--LPKEPDELALRQTLKLIVESKNPVLCVGGGCL---NSSEELRKFVGLTGIP 299 (643)
Q Consensus 228 ~Dv~~~~~~~~~~~~~~~p~~---~~~--~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~---~~~~~l~~lae~lg~P 299 (643)
.|++.+++..........+.. ... ....+..+.+++++++|.+||||+|++|+|+. .+.+++.+|||++|+|
T Consensus 241 ~Dv~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l~~lae~~~~P 320 (677)
T 1t9b_A 241 KDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIP 320 (677)
T ss_dssp HHHHHSBCCSCBC--------------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCC
T ss_pred HHHhhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHHHHHHHHhCCC
Confidence 999877553111100011111 000 00112357899999999999999999999986 3568899999999999
Q ss_pred eeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCce---------EEEEcCCc
Q 040733 300 VTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK---------IVHIDIDS 370 (643)
Q Consensus 300 V~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~---------iI~Id~d~ 370 (643)
|++|++|||.||++||+++|++|.++...++++++++|+||+||++++++.++.+..|.++++ +||||+|+
T Consensus 321 V~tt~~gkg~~~~~hpl~lG~~G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~ 400 (677)
T 1t9b_A 321 VTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSP 400 (677)
T ss_dssp EEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCG
T ss_pred eeeccccCccCCCCCccccCcCCccCcHHHHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCH
Confidence 999999999999999999999999999999999999999999999999988887777766666 99999999
Q ss_pred ccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccc--CCCCCCCHHHHHHHHHhcC-
Q 040733 371 NEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK--TFGEEIPPQYAIQILNELT- 447 (643)
Q Consensus 371 ~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~L~~~l- 447 (643)
.+++++++.++.|++|++.+|++|++.+... .....|.+++.+.+++++..+. .....+++..+++.|++.+
T Consensus 401 ~~~~~~~~~~~~i~gD~~~~l~~L~~~l~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~l~ 475 (677)
T 1t9b_A 401 KNINKVVQTQIAVEGDATTNLGKMMSKIFPV-----KERSEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVAN 475 (677)
T ss_dssp GGSSSSSCCSEEEESCHHHHHHHHHTTSCCC-----CCCHHHHHHHHHHHHHSCCCCCCCCTTCCBCHHHHHHHHHHHHH
T ss_pred HHhCCcccCCEEEeCCHHHHHHHHHHHhhcc-----ccchHHHHHHHHHHHhcccccccccCCCCcCHHHHHHHHHHHhh
Confidence 9999999999999999999999998766431 1235788888777766542211 1235699999999999998
Q ss_pred --CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHH
Q 040733 448 --DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIK 525 (643)
Q Consensus 448 --~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~ 525 (643)
++ +.|+++|+|++.+|..++++.+++++|++++++|+||+++|+|+|+++|.|+++||+|+|||+|+|+++||+|++
T Consensus 476 ~~~~-~~iv~~~vg~~~~~~~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~~~~~eL~ta~ 554 (677)
T 1t9b_A 476 DTGR-HVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAV 554 (677)
T ss_dssp TTCS-CEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHH
T ss_pred cCCC-CEEEEeCCchHHHHHHHhcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHhccHHHHHHHH
Confidence 56 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCC
Q 040733 526 AENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETP 605 (643)
Q Consensus 526 ~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~ 605 (643)
++++|++|||+||++|+|++++|...|..++.++. ...+||.++|++||+++++|++.+||+++|+++++.+
T Consensus 555 ~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~--------~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~ 626 (677)
T 1t9b_A 555 QAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTK 626 (677)
T ss_dssp HHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCC--------CCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHCS
T ss_pred HhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCc--------CCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999887765543321 2468999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCCCCcccccCCCcccccccccC
Q 040733 606 GPYLLDVMVSYQEHVVPMIPYDKSFKDTILED 637 (643)
Q Consensus 606 gp~lIeV~v~~~~~~~p~~~~~~~~~~~~~~~ 637 (643)
||+||||.++++++..||++.+..+.+++...
T Consensus 627 gp~lIev~~~~~~~~~p~~~~~~~~~~~~~~~ 658 (677)
T 1t9b_A 627 GPVLLEVEVDKKVPVLPMVAGGSGLDEFINFD 658 (677)
T ss_dssp SCEEEEEEBCSSCCCSSBCCTTCCTTSCBCCC
T ss_pred CcEEEEEEecCCcccCCcCCCCCchhhhhcCc
Confidence 99999999999999999998887777766443
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-99 Score=853.39 Aligned_cols=530 Identities=28% Similarity=0.410 Sum_probs=459.8
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
|.++++|+|++.|+++||++|||+||+++++|+++|.+++ |++|.+|||++|+|||+||||+||||+||++|+|||++|
T Consensus 1 m~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N 80 (549)
T 3eya_A 1 MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLH 80 (549)
T ss_dssp CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhh
Confidence 4679999999999999999999999999999999999875 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+||||+|....+++++|++||.++++++|||++++.+++++++.+++||+.|.++ +|||||+|
T Consensus 81 ~~~gi~~A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~i 159 (549)
T 3eya_A 81 LINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLN-RGVSVVVL 159 (549)
T ss_dssp THHHHHHHHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHT-TSEEEEEE
T ss_pred hHHHHHHHHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhC-CCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 59999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMG 306 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~g 306 (643)
|.|++.+++....... ..+... ....++++.+++++++|.+||||+|++|+|+.++.+++++|+|++|+||++|++|
T Consensus 160 P~dv~~~~~~~~~~~~-~~~~~~--~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~~~a~~~l~~lae~~~~Pv~~t~~g 236 (549)
T 3eya_A 160 PGDVALKPAPEGATMH-WYHAPQ--PVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRG 236 (549)
T ss_dssp EHHHHTSBCCTTCCCC-CCCCCC--CEEECCHHHHHHHHHHHHTCCSEEEEECGGGTTCHHHHHHHHHHHTCCEEECGGG
T ss_pred ChhHhhcccCcccccc-ccccCC--CCCCCCHHHHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhCCCEEECCcc
Confidence 9999987763221100 011001 0122578899999999999999999999998888899999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecC
Q 040733 307 LGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICAD 386 (643)
Q Consensus 307 kg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D 386 (643)
||.+|++||+++|++|..++..++++++++|+||+||++++.. ..+.+++++||||+|+.+++++++.++.+++|
T Consensus 237 kg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~iG~~~~~~-----~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d 311 (549)
T 3eya_A 237 KEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYR-----AFYPTDAKIIQIDINPASIGAHSKVDMALVGD 311 (549)
T ss_dssp HHHHSSSCTTBCCCCSTTSCHHHHHHHHHCSEEEEESCCCCCG-----GGSCSSSEEEEEESCGGGTTSSSCCSEEEECC
T ss_pred CcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCCcc-----ccCCCCCeEEEEeCCHHHhCCCCCCCeEEEeC
Confidence 9999999999999999999999999999999999999998532 12345689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC----CcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 387 AKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYP----FSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 387 ~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++.+|++|.+.+.... ...|.+++.+.++++. ........++++..+++.|++.+++ +.+|+.|+|++.
T Consensus 312 ~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ivv~d~G~~~ 384 (549)
T 3eya_A 312 IKSTLRALLPLVEEKA------DRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAAD-DAIFTCDVGTPT 384 (549)
T ss_dssp HHHHHHHHGGGSCCCC------CCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHSCT-TCEEEECTTHHH
T ss_pred HHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhCCC-CCEEEEcCcHHH
Confidence 9999999987665321 1245554433222111 0011124579999999999999999 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
+|..+++..+.+++++.++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||++||
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~nN~~~g 464 (549)
T 3eya_A 385 VWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLG 464 (549)
T ss_dssp HHHHHHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEEEEECSBCC
T ss_pred HHHHHhCccCCCCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccc
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVP 622 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p 622 (643)
|++.+|....... ... ....+||.++|++||+++++|++++||+++|+++++.+||+||||+++++++..|
T Consensus 465 ~~~~~~~~~~~~~-~~~--------~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~~~~p 535 (549)
T 3eya_A 465 FVAMEMKAGGYLT-DGT--------ELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIP 535 (549)
T ss_dssp CC-------------CC--------BCCCCCHHHHHHHTTSEEEEECSGGGHHHHHHHHHHSSSCEEEEEEBCCCCSCCC
T ss_pred HHHHHHHhcCCCC-cCC--------cCCCCCHHHHHHHcCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeccccccCC
Confidence 9987665321111 111 2356899999999999999999999999999999999999999999999988765
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-98 Score=853.46 Aligned_cols=550 Identities=26% Similarity=0.370 Sum_probs=481.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-C-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-N-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
.|+++++|++.|+++||++|||+||+++++|+++|.+. + |++|.+|||++|+|||+||||+||||+||++|+|||++|
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N 82 (589)
T 2pgn_A 3 IKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLL 82 (589)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGG
T ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHHH
Confidence 47999999999999999999999999999999999886 5 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCC-CCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTD-AFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
+++||++|+.+++|||+||||++...++++ ++|++||.. ++++|||++++.+++++++.+++||+.|.++|+|||||+
T Consensus 83 ~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 161 (589)
T 2pgn_A 83 LHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVD 161 (589)
T ss_dssp CHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEEE
Confidence 999999999999999999999999999999 999999999 999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 226 IPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 226 iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
||.|++.+++......+.... .....+..++ +.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|
T Consensus 162 iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t 239 (589)
T 2pgn_A 162 IPFDLTADQIDDKALVPRGAT-RAKSVLHAPN-EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTT 239 (589)
T ss_dssp EETHHHHCEEECTTTSCCCCC-CCCCCCCCCH-HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEC
T ss_pred eCHhhhhcccccccccccccc-cCCccCCChH-HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHHHhCCCEEEc
Confidence 999998765431100000000 1111001234 7899999999999999999999986 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
++|||.+|++||+++|++|..++..++++++++|+||+||+++.++.++ +..|.+++++||||+|+.+++++++.++.|
T Consensus 240 ~~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 318 (589)
T 2pgn_A 240 STGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWGIA-QGYITKMPKFVHVDTDPAVLGTFYFPLLSV 318 (589)
T ss_dssp TTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTTT-TTTTCCCCSEEEEESCGGGTTSSSCCSEEE
T ss_pred cccCccCCCCChhhcCCccccCCHHHHHHHhhCCEEEEECCCccccccc-ccccCCCCeEEEEeCCHHHHCCCcCCCEEE
Confidence 9999999999999999999999988999999999999999999888777 766767889999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCC---CCChhHHH--HHHHH-HHHhCC-CcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 384 CADAKLVFNRMNMILESKGVGF---MFDFSAWR--EELHE-QKKKYP-FSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~---~~~~~~w~--~~~~~-~~~~~~-~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
++|++.+|++|.+.+....... ......|. +++.+ .++ +. ........++++..+++.|++.+++ +.+++.
T Consensus 319 ~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~iv~~ 396 (589)
T 2pgn_A 319 VADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDG-WVREQESGDGMPASMFRAMAEVRKVQRP-EDIIVT 396 (589)
T ss_dssp ECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHH-HHHHHTCCCCSSCCHHHHHHHHHHTCCT-TCEEEE
T ss_pred EeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHH-HHhhhccCCCCCcCHHHHHHHHHHhCCC-CCEEEE
Confidence 9999999999988775321000 01123576 55544 332 11 0000123569999999999999998 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++.+|..++++.+++++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 397 d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~ 476 (589)
T 2pgn_A 397 DIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVEHKLPVITMVF 476 (589)
T ss_dssp CSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEE
T ss_pred cCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
||++|+|++++|...|+.++. +. ...+||.++|++||+++++|++.+||+++|+++++.+||+||||++++
T Consensus 477 nN~~~~~~~~~~~~~~~~~~~-~~--------~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~ 547 (589)
T 2pgn_A 477 TNESYGANWTLMNHQFGQNNW-TE--------FMNPDWVGIAKAFGAYGESVRETGDIAGALQRAIDSGKPALIEIPVSK 547 (589)
T ss_dssp ECSBCHHHHHHHHHHHSSCCS-CB--------CCCCCHHHHHHHHTCEEEECTTTCCHHHHHHHHHHHCSCEEEEEECCS
T ss_pred ECCCcccchHHHHhhcCCCcc-cc--------CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 999999999999887765433 22 236899999999999999999999999999999988999999999999
Q ss_pred CCCcccccCCCccccccc
Q 040733 617 QEHVVPMIPYDKSFKDTI 634 (643)
Q Consensus 617 ~~~~~p~~~~~~~~~~~~ 634 (643)
.++..|+ +.+....++.
T Consensus 548 ~~~~~~~-~~g~~~~~~~ 564 (589)
T 2pgn_A 548 TQGLASD-PVGGVGPNLL 564 (589)
T ss_dssp SSSTTTC-CSSCCCCCCS
T ss_pred CCCcCcc-CCCcchHhhc
Confidence 9988876 8887777765
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-98 Score=845.54 Aligned_cols=532 Identities=25% Similarity=0.387 Sum_probs=463.6
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.++||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 11 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~ 90 (566)
T 1ozh_A 11 AHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLIT 90 (566)
T ss_dssp SCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHH
T ss_pred CcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHH
Confidence 78999999999999999999999999999999998845999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
||++|+.+++|||+||||++...++++++|++||..+++++|||++++.+++++++.+++||+.|.++|+|||||+||.|
T Consensus 91 ~l~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 91 GMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCC
Q 040733 230 VQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGL 307 (643)
Q Consensus 230 v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gk 307 (643)
++.+++...... .+... . .+.++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|++||
T Consensus 171 v~~~~~~~~~~~---~~~~~-~-~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~k 245 (566)
T 1ozh_A 171 VVDGPVSGKVLP---ASGAP-Q-MGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAA 245 (566)
T ss_dssp HHHSCEEECCCC---CCCSC-E-ECCSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGT
T ss_pred hhhccccccccc---ccccc-C-CCCCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCCCEEEccccC
Confidence 987765321110 01111 1 1235778899999999999999999999986 678999999999999999999999
Q ss_pred CCCCCCCC-CcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcccccc-CCceEEEEcCCcccccCCCCCCeeEec
Q 040733 308 GLFPCTDE-LCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFA-TRAKIVHIDIDSNEIGKVKLPDVSICA 385 (643)
Q Consensus 308 g~~~~~hp-l~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~-~~~~iI~Id~d~~~i~~~~~~~~~i~~ 385 (643)
|.+|++|| +++|++|..++..++++++++|+||+||+.+ .++....|. +++++||||+|+.+++++++.++.|++
T Consensus 246 g~~~~~~p~~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~---~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 322 (566)
T 1ozh_A 246 GAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSP---VEYEPAMWNSGNATLVHIDVLPAYEERNYTPDVELVG 322 (566)
T ss_dssp TTCCTTTCTTEEEECSSBTTCHHHHHHHHCSEEEEESCCG---GGSCGGGTCCSCSEEEEEESSCCCCBTTBCCSEEEES
T ss_pred CcCCCCChHhhcCCCcccCCHHHHHHHHhCCEEEEECCCC---CcCCccccCCCCCcEEEEeCCHHHhCCCCCCCEEEEe
Confidence 99999999 9999999999888899999999999999964 333333443 367999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCC-CCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 386 DAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEE-IPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 386 D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~-i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
|++.+|++|.+.+.... ....|.+++.+.++++.. .......+ +++..+++.|++.+++ +.+|+.|+|+
T Consensus 323 d~~~~l~~L~~~l~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~-~~iv~~d~G~ 396 (566)
T 1ozh_A 323 DIAGTLNKLAQNIDHRL-----VLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIVNS-DVTLTVDMGS 396 (566)
T ss_dssp CHHHHHHHHHHTCCSCC-----CCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHCCT-TEEEEECSSH
T ss_pred CHHHHHHHHHHhccccC-----CcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhCCC-CCEEEEcCcH
Confidence 99999999987654311 123576666544432210 00112345 9999999999999998 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+.+|..++++..+++++++++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+||++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~nN~~ 476 (566)
T 1ozh_A 397 FHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNG 476 (566)
T ss_dssp HHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHHHTCCEEEEEEECSB
T ss_pred HHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHHHHHHhCCCcEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
|+|++++|...|+..+. + ....+||.++|++||+++++|++.+||+++|+++++.+||+||||.++++++
T Consensus 477 ~~~~~~~~~~~~~~~~~-~--------~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~~- 546 (566)
T 1ozh_A 477 YNMVAIQEEKKYQRLSG-V--------EFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMDVDGPAVVAIPVDYRDN- 546 (566)
T ss_dssp CHHHHHHHHHHHSSCCS-C--------BCCCCCHHHHHHTTTSEEEECCSGGGHHHHHHHHHHSSSCEEEEEEBCCTTH-
T ss_pred hhHHHHHHHHhcCCCcc-C--------cCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcC-
Confidence 99999998887754432 1 1345899999999999999999999999999999999999999999999886
Q ss_pred ccccCC
Q 040733 621 VPMIPY 626 (643)
Q Consensus 621 ~p~~~~ 626 (643)
|++|.
T Consensus 547 -p~~~~ 551 (566)
T 1ozh_A 547 -PLLMG 551 (566)
T ss_dssp -HHHHT
T ss_pred -CCccc
Confidence 77763
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-97 Score=845.99 Aligned_cols=532 Identities=24% Similarity=0.352 Sum_probs=465.1
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.+.|+++++|++.|+++||++|||+||+++++|+++|.+. +|++|.+|||++|+|||+||||+||||+||++|+|||+
T Consensus 8 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~ 87 (603)
T 4feg_A 8 QTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGG 87 (603)
T ss_dssp -CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHH
T ss_pred cCeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCchH
Confidence 3468999999999999999999999999999999999885 49999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
+|+++||++|+.+++|||+||||+++..++++++|++||.++|+++|||++++.+++++++.+++||+.|.+ ++|||||
T Consensus 88 ~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l 166 (603)
T 4feg_A 88 THLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVV 166 (603)
T ss_dssp HTTHHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 5799999
Q ss_pred EcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecC
Q 040733 225 DIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 225 ~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~ 304 (643)
+||.|++.+++....... .........++.++++.+++++++|++||||+|++|+|+.++.+++.+|+|++|+||++|+
T Consensus 167 ~iP~dv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~~~a~~~l~~lae~~~~PV~~t~ 245 (603)
T 4feg_A 167 QIPVDLPWQQIPAEDWYA-SANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTY 245 (603)
T ss_dssp EEETTGGGSEEETTTCCC-CGGGCCCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECG
T ss_pred EeChhhhhccCCcccccc-cccccCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCchhHHHHHHHHHHHHCCCEEEcC
Confidence 999999988764321000 0000000112346888999999999999999999999998888999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+|||.||++||+++|++|..++..++++++++|+||+||++++. +..+..|.+++++||||+|+.+++++++.++.|+
T Consensus 246 ~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~--~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~ 323 (603)
T 4feg_A 246 PAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPF--AEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVL 323 (603)
T ss_dssp GGTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEESCCCTT--TTTTTTTTTCSEEEEEESCGGGTTSSSCCSEEEE
T ss_pred ccccCCCCCChhhcccCcccCcHHHHHHHHhCCEEEEECCCCCc--ccccccCCCCCeEEEEeCCHHHhCCccCCCEEEE
Confidence 99999999999999999999999999999999999999999873 2222345667899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCCh
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQ 460 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~ 460 (643)
+|++.+|++|++.+.... ...|.+.+.+.++++.. .......++++.++++.|++.+++ +.+|+.|+|+
T Consensus 324 ~D~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~-~~ivv~d~G~ 396 (603)
T 4feg_A 324 ADAQKTLAAILAQVSERE------STPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEP-DAIYSIDVGD 396 (603)
T ss_dssp SCHHHHHHHHHHTCCCCC------CCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHCCT-TCEEEECSSH
T ss_pred eCHHHHHHHHHHhhhccC------ChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhCCC-CCEEEECCch
Confidence 999999999987765321 12455443322211110 011234679999999999999999 9999999999
Q ss_pred hHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCC
Q 040733 461 HQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQY 540 (643)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~ 540 (643)
+.+|..+++..+.+++|+.++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|+.++++|+++||+||++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~~a~~~~lp~~~vv~nN~~ 476 (603)
T 4feg_A 397 INLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQ 476 (603)
T ss_dssp HHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSB
T ss_pred HHHHHHHhceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHHHHHHHCcCeEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH--hCCCcEEEEEEeCCC
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML--ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al--~~~gp~lIeV~v~~~ 617 (643)
|+|++..|...+..+...+ ....+||.++|++||+++++|++.+||+++|++++ +.+||+||||+++++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~~gP~lIev~~~~~ 547 (603)
T 4feg_A 477 YGFIKDEQEDTNQNDFIGV--------EFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGD 547 (603)
T ss_dssp CHHHHHHHHHHCSSCCCSS--------BCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHHHHHHTTTSCEEEEEECCCC
T ss_pred hHHHHHHHHHhcCCCcccC--------cCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence 9999988876543212222 13568999999999999999999999999999999 889999999999764
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-97 Score=847.81 Aligned_cols=555 Identities=30% Similarity=0.468 Sum_probs=479.8
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N 146 (643)
.++++|+|++.|+++||++|||+||+++++|+++|.+.+ |++|.++||++|+|||+||||+| |+++||++|+|||++|
T Consensus 26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N 105 (616)
T 2pan_A 26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD 105 (616)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence 369999999999999999999999999999999998765 99999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+||||+|....+++++|++||.++++++|||++++.+++++++++++||+.|+++|+|||||+|
T Consensus 106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~i 185 (616)
T 2pan_A 106 MITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDL 185 (616)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++..+....+.....++.+. +.+..+.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|+
T Consensus 186 P~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~PV~~t~ 261 (616)
T 2pan_A 186 PFDVQVAEIEFDPDMYEPLPVYK----PAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTL 261 (616)
T ss_dssp EHHHHHSEEECCGGGCCCCCCCC----CCCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECT
T ss_pred chhhhhcccccccccccccccCC----CCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhCCCEEEcc
Confidence 99998764321111111122211 123578899999999999999999999986 678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcH-HHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTV-YANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~-~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+|||.+|++||+++|++|..++. .++++++++|+||+||++++++.++.+..|.++.++||||+|+.+++++++.++.+
T Consensus 262 ~~~g~~~~~hp~~~G~~g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 341 (616)
T 2pan_A 262 MGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGI 341 (616)
T ss_dssp TTTTSSCTTSTTBCCCCSSSSCCHHHHHHHHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTTSSSCCSSCE
T ss_pred ccCccCCCCCccccCCccccCCHHHHHHHHHhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEE
Confidence 99999999999999999988887 88999999999999999998877777666777889999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccc-CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhH
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK-TFGEEIPPQYAIQILNELTDDEETIISTGVGQHQ 462 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~ 462 (643)
++|++.+|++|.+.+.............|.+++.+.+.+.+.... ....++++..+++.|++.+++ +.++++|+|++.
T Consensus 342 ~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-~~ivv~d~G~~~ 420 (616)
T 2pan_A 342 VSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGR-DVCYVTTIGLSQ 420 (616)
T ss_dssp ECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSEECCCCCCSSBCHHHHHHHHHHHSCT-TEEEEECSSHHH
T ss_pred EcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhhhccccCCCCcCHHHHHHHHHHhCCC-CcEEEEcCcHHH
Confidence 999999999998876531100011234677766655554432211 123569999999999999998 999999999999
Q ss_pred HHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 463 MWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
+|+.++++.+++++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|++|||+||++|+
T Consensus 421 ~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~NN~~~~ 500 (616)
T 2pan_A 421 IAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHVLVNNAYLG 500 (616)
T ss_dssp HHHHHHCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHHHHHHTTCCCEEEEEECSBCH
T ss_pred HHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHHHHHHhCCCeEEEEEECCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcc-----cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh----CCCcEEEEEE
Q 040733 543 MNVEYEDRYFEA-----NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE----TPGPYLLDVM 613 (643)
Q Consensus 543 ~~~~~q~~~~~~-----~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~----~~gp~lIeV~ 613 (643)
|++++|...|+. .+..... .+ .....+||.++|++||+++++|++++||+++|+++++ .+||+||||.
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lIev~ 577 (616)
T 2pan_A 501 LIRQSQRAFDMDYCVQLAFENINS-SE--VNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVI 577 (616)
T ss_dssp HHHHHGGGGTCCCSCBCCCCCTTC-GG--GTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HHHHHHHHhcCCcccccccccccc-cc--CCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEE
Confidence 999988776653 1111111 00 0012479999999999999999999999999999998 8999999999
Q ss_pred eCCCCCcccccCCCcccccccc
Q 040733 614 VSYQEHVVPMIPYDKSFKDTIL 635 (643)
Q Consensus 614 v~~~~~~~p~~~~~~~~~~~~~ 635 (643)
+++.+. ++.+..++++..
T Consensus 578 ~~~~~~----~~~~~~~~~~~~ 595 (616)
T 2pan_A 578 LERVTN----ISMGSELDNVME 595 (616)
T ss_dssp BCSCCC----CCBCSSGGGCBC
T ss_pred eccccc----CCCCcchHHhhh
Confidence 998773 344555555543
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-97 Score=838.28 Aligned_cols=537 Identities=25% Similarity=0.369 Sum_probs=469.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
.|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|++
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~ 82 (563)
T 2uz1_A 3 MITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAV 82 (563)
T ss_dssp EEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHHTCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTH
T ss_pred ccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhcCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHHH
Confidence 47999999999999999999999999999999999876799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
+||++|+.+++|||+||||++...++++++|+ +||.++++++|||++++.+++++++.+++||+.|.++|+|||||+||
T Consensus 83 ~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP 162 (563)
T 2uz1_A 83 TPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLP 162 (563)
T ss_dssp HHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecC
Q 040733 228 VDVQLELAVP-NWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 228 ~Dv~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~ 304 (643)
.|+.+++..+ ....+. .... ..+..++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|+
T Consensus 163 ~dv~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~ 239 (563)
T 2uz1_A 163 WDILMNQIDEDSVIIPD-LVLS--AHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADY 239 (563)
T ss_dssp HHHHHCEEEGGGSCCCC-CCCC--SSCCBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCEEECG
T ss_pred HHHhhhhcccccccccc-cccC--CCCCCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHHhCCcEEEcC
Confidence 9965543211 100000 0000 011235788899999999999999999999987 677999999999999999999
Q ss_pred CCCCCCCCC-CCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccC-CceEEEEcCCcccccCCCCCCee
Q 040733 305 MGLGLFPCT-DELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFAT-RAKIVHIDIDSNEIGKVKLPDVS 382 (643)
Q Consensus 305 ~gkg~~~~~-hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~-~~~iI~Id~d~~~i~~~~~~~~~ 382 (643)
+|||.+|++ ||+++|++| .++..+++ ++++|+||++|+++.++.++.+..|.+ ++++||||+|+.+++++++.++.
T Consensus 240 ~~~g~~~~~~~p~~~G~~g-~~~~~~~~-~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 317 (563)
T 2uz1_A 240 EGLSMLSGLPDAMRGGLVQ-NLYSFAKA-DAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALG 317 (563)
T ss_dssp GGGGGGTTSCGGGEEEEGG-GGGGTTTT-TCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGGTTSSSCCSEE
T ss_pred cccCcCCCCCChhhcCCCC-CCCHHHHh-hcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCHHHhCCCCCCCeE
Confidence 999999999 999999999 88887888 999999999999999988877777766 78999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHH-HHHhCCC-c-ccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCC
Q 040733 383 ICADAKLVFNRMNMILESKGVGFMFDFSAWREELHE-QKKKYPF-S-YKTFGEEIPPQYAIQILNELTDDEETIISTGVG 459 (643)
Q Consensus 383 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~-~~~~~~~-~-~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G 459 (643)
+++|++.+|++|.+.+..... ......|.+++.+ .++++.. . ......++++..+++.|++.+++ +.+|+.|+|
T Consensus 318 i~~d~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~iv~~d~G 394 (563)
T 2uz1_A 318 IVADVGGTIEALAQATAQDAA--WPDRGDWCAKVTDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDA-GVTVVADGA 394 (563)
T ss_dssp ECSCHHHHHHHHHHHHTTSCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHTTCST-TEEEEECSS
T ss_pred EEcCHHHHHHHHHHhhhhccc--ccCcHHHHHHHHHHHHHHhHhhhhccccCCCcCHHHHHHHHHHhCCC-CcEEEEcCc
Confidence 999999999999987754210 0122457655544 3322210 0 00001279999999999999998 999999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhC--CCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEe
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVAN--PGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~--p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~N 537 (643)
++.+|..+++..+++++++.++++|+||+++|+|+|+++|. |+++||+++|||+|+|+++||+|++++++|+++||+|
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~n 474 (563)
T 2uz1_A 395 LTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMN 474 (563)
T ss_dssp HHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHHHHHHHTCCCEEEEEE
T ss_pred hHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHHHHHHhCCCeEEEEEe
Confidence 99999999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHhhcc-cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 538 NQYLGMNVEYEDRYFEA-NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 538 N~~~g~~~~~q~~~~~~-~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
|++|+|++++|...|+. +..++. ...+||.++|++||+++++|++.+||+++|+++++.+||+||||++++
T Consensus 475 N~~~~~~~~~~~~~~~~~~~~~~~--------~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~ 546 (563)
T 2uz1_A 475 NQSWGATLHFQQLAVGPNRVTGTR--------LENGSYHGVAAAFGADGYHVDSVESFSAALAQALAHNRPACINVAVAL 546 (563)
T ss_dssp CSBCHHHHHHHHHHTCTTCCCSCB--------CCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHSSSCEEEEEECCS
T ss_pred CCcchHHHHHHHHhcCCCcccCCc--------CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHCCCCEEEEEEecc
Confidence 99999999988776654 332221 245899999999999999999999999999999999999999999985
Q ss_pred CCCccc
Q 040733 617 QEHVVP 622 (643)
Q Consensus 617 ~~~~~p 622 (643)
+ +..|
T Consensus 547 ~-~~~p 551 (563)
T 2uz1_A 547 D-PIPP 551 (563)
T ss_dssp C-CCCH
T ss_pred c-cCCc
Confidence 3 3434
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-97 Score=844.22 Aligned_cols=539 Identities=22% Similarity=0.276 Sum_probs=473.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.++ +|++|.++||++|+|||+||||+||||+||++|+|||++|
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N 82 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH 82 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence 47999999999999999999999999999999999886 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.+++|||+||||++...++++++|++||.++++++|||++++.+++++++.+++||+.|.++||||||| |
T Consensus 83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-i 161 (590)
T 1v5e_A 83 LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-V 161 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-E
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-E
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccchhhhccCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecC
Q 040733 227 PVDVQLELAVPNWN--QPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT 304 (643)
Q Consensus 227 P~Dv~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~ 304 (643)
|.|++.+++..... ....++.+.. + .++.+.+++++++|.+||||+|++|+|+.++.+++.+|+|++++||++|+
T Consensus 162 P~dv~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~i~~~~~~l~~a~rpvil~G~g~~~a~~~l~~lae~~~~Pv~~t~ 238 (590)
T 1v5e_A 162 PGDFAKVEIDNDQWYSSANSLRKYAP--I-APAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTG 238 (590)
T ss_dssp ETTGGGCEEEGGGCCCCGGGCCCCCC--C-CCCHHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECT
T ss_pred ccchhhcccCcccccccccccccCCC--C-CCCHHHHHHHHHHHHhCCCeEEEEcCchhHHHHHHHHHHHHHCCCEEEcc
Confidence 99998765432100 0001121111 1 35778899999999999999999999884556899999999999999999
Q ss_pred CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccc-cCccccccCCceEEEEcCCcccccCCCCCCeeE
Q 040733 305 MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERM-TSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSI 383 (643)
Q Consensus 305 ~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~-t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i 383 (643)
+|||.+|++||+++|++|++++..++++++++|+||++|++++++. ++.. | ++.++||||+|+.+++++++.++.+
T Consensus 239 ~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~-~~~~~i~id~d~~~~~~~~~~~~~i 315 (590)
T 1v5e_A 239 KNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGTF--R-NVDNFIQIDIDPAMLGKRHHADVAI 315 (590)
T ss_dssp TCGGGSCTTCTTEEEESSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTTT--T-TCSEEEEEESCGGGTTSSSCCSEEE
T ss_pred ccCcCCCCCChhhCccCcccCCHHHHHHHHhCCEEEEECCCCcchhccccC--C-CCCeEEEEeCCHHHHCCCcCCCeEE
Confidence 9999999999999999999999999999999999999999998765 1211 3 5779999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccc----CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCC
Q 040733 384 CADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK----TFGEEIPPQYAIQILNELTDDEETIISTGVG 459 (643)
Q Consensus 384 ~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G 459 (643)
++|++.+|++|.+.+.... ...|.+++.+.+++++.... ....++++.++++.|++.+++ +.++++|+|
T Consensus 316 ~gd~~~~l~~L~~~l~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ivv~d~G 388 (590)
T 1v5e_A 316 LGDAALAIDEILNKVDAVE------ESAWWTANLKNIANWREYINMLETKEEGDLQFYQVYNAINNHADE-DAIYSIDVG 388 (590)
T ss_dssp ESCHHHHHHHHHHHSCCCC------CCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHSCT-TCEEEECSS
T ss_pred EcCHHHHHHHHHHhhccCC------cHHHHHHHHHHHHHhHhhhhhcccCCCCCcCHHHHHHHHHhhCCC-CCEEEECCc
Confidence 9999999999988764311 13576665544433220000 123469999999999999998 999999999
Q ss_pred hhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCC
Q 040733 460 QHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQ 539 (643)
Q Consensus 460 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 539 (643)
++.+|..++++.+++++|++++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+||+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~NN~ 468 (590)
T 1v5e_A 389 NSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNT 468 (590)
T ss_dssp HHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECS
T ss_pred hHHHHHHHhcccCCCCeEEcCCCCCcccChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHHHHHHhCCCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHh-hcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhC---CCcEEEEEEeC
Q 040733 540 YLGMNVEYEDRY-FEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLET---PGPYLLDVMVS 615 (643)
Q Consensus 540 ~~g~~~~~q~~~-~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~---~gp~lIeV~v~ 615 (643)
+|+|++++|... | .+ .++ ....+||.++|++||+++++|++++||+++|+++++. +||+||||.++
T Consensus 469 ~~~~~~~~q~~~~~-~~-~~~--------~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~gp~liev~~~ 538 (590)
T 1v5e_A 469 EYAFIKNKYEDTNK-NL-FGV--------DFTDVDYAKIAEAQGAKGFTVSRIEDMDRVMAEAVAANKAGHTVVIDCKIT 538 (590)
T ss_dssp SCTTGGGTTSSSCC-SC-CCC--------CCCCCCHHHHHHHTTSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred chHHHHHHHHHhcC-CC-ccc--------cCCCCCHHHHHHHcCCEEEEECCHHHHHHHHHHHHHhcCCCCCEEEEEEec
Confidence 999998776543 3 22 111 1246899999999999999999999999999999987 99999999999
Q ss_pred CCC--------C------------cccccCCCcccc
Q 040733 616 YQE--------H------------VVPMIPYDKSFK 631 (643)
Q Consensus 616 ~~~--------~------------~~p~~~~~~~~~ 631 (643)
+++ + +.||++.+..+.
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 574 (590)
T 1v5e_A 539 QDRPIPVETLKLDSKLYSEDEIKAYKERYEAANLVP 574 (590)
T ss_dssp SCCCCCTTSCCCCTTTSCHHHHHHHHHHTTCTTCCC
T ss_pred ccccccccccccccccccccccccccccccCCCCCC
Confidence 999 6 779999887766
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-95 Score=826.47 Aligned_cols=532 Identities=26% Similarity=0.368 Sum_probs=459.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCC-cHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGA-SIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~-~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++++|++.|+++||++|||+||++ +++|+++|. . |++|.++||++|+|||+||||+||||+||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~-~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNL 88 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST-T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc-C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHH
Confidence 489999999999999999999999999 999999998 4 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCC-CCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGT-DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~-~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
++||++|+.+++|||+||||++...+++ +++|++||.++++++|||++++.+++++++.+++||+.|.++|+|||||+|
T Consensus 89 ~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 168 (573)
T 2iht_A 89 STGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISL 168 (573)
T ss_dssp HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEE
T ss_pred HHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCC--CCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCcee
Q 040733 227 PVDVQLELAVPN--WNQPCKLPSCISSLP-KEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVT 301 (643)
Q Consensus 227 P~Dv~~~~~~~~--~~~~~~~p~~~~~~~-~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~ 301 (643)
|.|++.++.... .+.....+.+.+... ..++.+.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||+
T Consensus 169 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~ 248 (573)
T 2iht_A 169 PVDLLGSSEGIDTTVPNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVI 248 (573)
T ss_dssp EHHHHTCCTTCC---CCCCCCCCSSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEE
T ss_pred cchHhhhhhcccccCCccccccCCCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHHHHHHHCCeEE
Confidence 999987641000 000001111111100 125677899999999999999999999986 678999999999999999
Q ss_pred ecCCCCCCCCCCCCCccccc-----CCCCcHHHHHhhhcCCEEEEecCc-cCccccCccccccCCceEEEEcCCcccccC
Q 040733 302 CTTMGLGLFPCTDELCLRMV-----GMFGTVYANYAVNECDLLLAAGVR-FNERMTSKLEDFATRAKIVHIDIDSNEIGK 375 (643)
Q Consensus 302 tt~~gkg~~~~~hpl~lG~~-----g~~~~~~~~~~l~~aDlvL~vG~~-~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~ 375 (643)
+|++|||.+|++||+++|++ |..++..++++++++|+||+||++ +.++.++.|.. .+++++||||+|+.++++
T Consensus 249 ~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~ 327 (573)
T 2iht_A 249 TTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQK-GIEKKTVRISPTVNPIPR 327 (573)
T ss_dssp ECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHCC-SSCCEEEEEESSCCSCTT
T ss_pred EecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccCC-CCCCeEEEEeCCHHHhCC
Confidence 99999999999999999998 888888889999999999999999 87777655441 256799999999999999
Q ss_pred CCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCC----CC
Q 040733 376 VKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDD----EE 451 (643)
Q Consensus 376 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~----~d 451 (643)
+++.++.+++|++.+|++|.+.+.............|+++......+. .....++++.++++.|++.+++ .|
T Consensus 328 ~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 403 (573)
T 2iht_A 328 VYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADP----ETYEDGMRVHQVIDSMNTVMEEAAEPGE 403 (573)
T ss_dssp TCCCSEEEESCHHHHHHHHHHHTTTCCCCCCCCCHHHHHHHHHHHTCC----CCCSSSBCHHHHHHHHHHHHHHHSCTTC
T ss_pred CcCCCeeEeCCHHHHHHHHHHhccccCchhHHHHHHHHHHhhhhhhcc----ccCcCCcCHHHHHHHHHHhcccccCCCC
Confidence 999999999999999999988765421110011223333221111011 1223569999999999999863 16
Q ss_pred eEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCe
Q 040733 452 TIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPV 531 (643)
Q Consensus 452 ~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv 531 (643)
.+++.|+|++.+|..++++.+++++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+
T Consensus 404 ~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~~~~~~~L~~a~~~~l~~ 483 (573)
T 2iht_A 404 GTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARLNLPI 483 (573)
T ss_dssp CEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHHTCCC
T ss_pred cEEEEcCcHhHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHHHhHHHHHHHHHHhCCCe
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCchhhHHHHHHhhcccccc--cccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEE
Q 040733 532 KILLINNQYLGMNVEYEDRYFEANRAN--SFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYL 609 (643)
Q Consensus 532 ~ivV~NN~~~g~~~~~q~~~~~~~~~~--~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~l 609 (643)
++||+||++|+|++++|...|+.+ .. +. ...+||.++|++||+++++|++.+||+++|+++++.+||+|
T Consensus 484 ~ivv~NN~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~l 554 (573)
T 2iht_A 484 VTVVVNNDTNGLIELYQNIGHHRS-HDPAVK--------FGGVDFVALAEANGVDATRATNREELLAALRKGAELGRPFL 554 (573)
T ss_dssp EEEEEECSBCHHHHHHHHHHHSSC-CGGGTB--------CCCCCHHHHHHHTTCEEEECCSHHHHHHHHHHHHTSSSCEE
T ss_pred EEEEEECCcchhhHHHHHHhcCCC-cCcccc--------CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEE
Confidence 999999999999999988877654 22 22 23489999999999999999999999999999999999999
Q ss_pred EEEEeCC
Q 040733 610 LDVMVSY 616 (643)
Q Consensus 610 IeV~v~~ 616 (643)
|||.+++
T Consensus 555 iev~~~~ 561 (573)
T 2iht_A 555 IEVPVNY 561 (573)
T ss_dssp EEEEBCC
T ss_pred EEEECCC
Confidence 9999987
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-94 Score=809.86 Aligned_cols=521 Identities=20% Similarity=0.284 Sum_probs=457.1
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMT 149 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~ 149 (643)
++++++|++.|+++||++|||+||+++++|+++|. .+|++|.++||++|+|||+||||+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~-~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~ 80 (528)
T 1q6z_A 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP-EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMG 80 (528)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC-TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh-hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHH
Confidence 58999999999999999999999999999999994 35999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCEEEEeCCCcccccCCCCCCc-cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 150 GLMDAYSDSIPILAITGQVSQKLLGTDAFQE-IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 150 gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~-~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
||++|+.+++|||+||||+++..++++++|+ +||.++++++|||++++.+++++++.+++||+.|.++|+|||||+||.
T Consensus 81 ~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (528)
T 1q6z_A 81 ALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPY 160 (528)
T ss_dssp HHHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred HHHHHhhcCCCEEEEeCCCcccccCCCcccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 9999999999999999999999999999999 699999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCce-eecCC
Q 040733 229 DVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPV-TCTTM 305 (643)
Q Consensus 229 Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV-~tt~~ 305 (643)
|++..+..... ......... . ...++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+|| +++++
T Consensus 161 d~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~~~~~ 237 (528)
T 1q6z_A 161 DDWDKDADPQS-HHLFDRHVS-S-SVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSA 237 (528)
T ss_dssp GGTTSBCCGGG-GGGTTCCCC-C-CCCCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSC
T ss_pred hhhhCcccccc-ccccccCCC-C-CCCCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHHCCCEEEeccC
Confidence 99876542110 000011111 0 1235778899999999999999999999976 67899999999999999 78889
Q ss_pred CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 306 GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 306 gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
|||.+|++||+++|++| .++..++++++++|+||++|+++.++.++.+.. +.+++++||||+|+.+++++ +.++.++
T Consensus 238 g~g~~~~~~p~~~G~~g-~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~-~~~~~i~ 315 (528)
T 1q6z_A 238 PRCPFPTRHPCFRGLMP-AGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARA-PMGDAIV 315 (528)
T ss_dssp SBCCSCTTSTTEEEECC-SCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHC-SSSEEEE
T ss_pred ccccCCCCCccccCcCC-CCcHHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhCCC-CCCeeEe
Confidence 99999999999999999 888889999999999999999999888776644 44578999999999999999 9999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHH
Q 040733 385 ADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMW 464 (643)
Q Consensus 385 ~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~ 464 (643)
+|++.+|++|.+.+..... ....|++ ... .......++++.++++.|++.+++ +.+|+.|+|++..|
T Consensus 316 ~d~~~~l~~L~~~~~~~~~----~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~iv~~d~g~~~~~ 382 (528)
T 1q6z_A 316 ADIGAMASALANLVEESSR----QLPTAAP-------EPA-KVDQDAGRLHPETVFDTLNDMAPE-NAIYLNESTSTTAQ 382 (528)
T ss_dssp SCHHHHHHHHHHHSCCCCS----CCCCCCC-------CCC-CCCCCSSSBCHHHHHHHHHHHSCT-TCEEEEECTTSHHH
T ss_pred CCHHHHHHHHHHHhhcccc----chHHHHh-------hhh-cccccCCCcCHHHHHHHHHhhCCC-CeEEEECCcccHHH
Confidence 9999999999877643210 0111211 100 111123569999999999999998 99999999999999
Q ss_pred HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 465 AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 465 ~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
..++++.+++++|+++++ |+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||++|+|+
T Consensus 383 ~~~~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~~a~~~~l~~~ivv~nN~~~~~~ 461 (528)
T 1q6z_A 383 MWQRLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGAL 461 (528)
T ss_dssp HHHHCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEEEEECSBCHHH
T ss_pred HHHhccccCCCcEECCCC-ccccchHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHHHHHHhCCCeEEEEEeCCcchHh
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
+.+|...+..++.++. ...+||.++|++||+++++|++.+||+++|+++++.+||+||||++++++
T Consensus 462 ~~~~~~~~~~~~~~~~--------~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~liev~~~~~~ 527 (528)
T 1q6z_A 462 RWFAGVLEAENVPGLD--------VPGIDFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSPV 527 (528)
T ss_dssp HHHHHHHTCCSCCSCB--------CCCCCHHHHHHHHTCEEEEESSHHHHHHHHHHHHTCSSCEEEEEEBCC--
T ss_pred HHHHHHhcCCCcccCC--------CCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHHCCCcEEEEEEecCCC
Confidence 9988876644332221 25689999999999999999999999999999999999999999998765
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-95 Score=820.20 Aligned_cols=530 Identities=22% Similarity=0.325 Sum_probs=449.6
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
...++++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|
T Consensus 7 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N 86 (568)
T 2c31_A 7 VELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLN 86 (568)
T ss_dssp CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred CCcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhCCCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 34689999999999999999999999999999999998767999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccC--CCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLG--TDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g--~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
+++||++|+.+++|||+||||+++..++ ++++|++||.++++++|||++++.+++++++.+++||+.|.++++|||||
T Consensus 87 ~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 166 (568)
T 2c31_A 87 GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYV 166 (568)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 9999999999999999999999999888 68999999999999999999999999999999999999999999999999
Q ss_pred EcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceee
Q 040733 225 DIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTC 302 (643)
Q Consensus 225 ~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~t 302 (643)
+||.|++.+++..........+.+.......++.+.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++
T Consensus 167 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~ 246 (568)
T 2c31_A 167 DLPAKLFGQTISVEEANKLLFKPIDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLP 246 (568)
T ss_dssp EEETHHHHCEEEHHHHHHHCCCCSCSSCCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEE
T ss_pred eCCHHHhhccccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHHHHHHhCCCEEe
Confidence 99999986544210000000111110111235788999999999999999999999987 6789999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCcccc-Ccccccc-CCceEEEEcCCcccccCCCCCC
Q 040733 303 TTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT-SKLEDFA-TRAKIVHIDIDSNEIGKVKLPD 380 (643)
Q Consensus 303 t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t-~~~~~~~-~~~~iI~Id~d~~~i~~~~~~~ 380 (643)
|++|||.+|++||+++|.. .+++++++|+||+||++++++.+ +....|. +++++||||+|+.+++++++.+
T Consensus 247 t~~~~g~~~~~~p~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~ 319 (568)
T 2c31_A 247 MGMAKGLLPDNHPQSAAAT-------RAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIA 319 (568)
T ss_dssp CGGGTTSSCTTCTTBCGGG-------HHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCS
T ss_pred cccccccCCCCChhhcchH-------HHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCC
Confidence 9999999999999999852 46788999999999999987654 3334565 6789999999999999999999
Q ss_pred eeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc----ccCC--CCCCCHHHHHHHHHhcC--CCCCe
Q 040733 381 VSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFS----YKTF--GEEIPPQYAIQILNELT--DDEET 452 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~----~~~~--~~~i~~~~~~~~L~~~l--~~~d~ 452 (643)
+.+++|++.+|++|.+.+.... .....|.+++.+.++++... .... ..++++..+++.|++.+ ++ +.
T Consensus 320 ~~i~~d~~~~l~~L~~~l~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~ 394 (568)
T 2c31_A 320 APVVGDIKSAVSLLRKALKGAP----KADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFMLANP-DI 394 (568)
T ss_dssp EEEESCHHHHHHHHHHHHTTCC----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHHHCC-SS
T ss_pred ceeeCCHHHHHHHHHHhhhhcC----CCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhcCCC-Ce
Confidence 9999999999999998775421 12356876665443321100 0011 35699999999999999 88 88
Q ss_pred EEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeE
Q 040733 453 IISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVK 532 (643)
Q Consensus 453 iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ 532 (643)
+++.|.|++..|...++....|++++.++++|+||+++|+|+|++++ |+++||+++|||+|+|+++||+|++++++|++
T Consensus 395 iv~~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~ 473 (568)
T 2c31_A 395 SLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-TGKPVIAVEGDSAFGFSGMELETICRYNLPVT 473 (568)
T ss_dssp EEEEESSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEE
T ss_pred EEEECChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeE
Confidence 99999887766677778888899999999999999999999999999 89999999999999999999999999999999
Q ss_pred EEEEeCCCc-hhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 533 ILLINNQYL-GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 533 ivV~NN~~~-g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
|||+||++| .+. ..+. ++.+... .....+||.++|++||+++++|++.+||+++|+++++.+||+|||
T Consensus 474 ivv~NN~~~~~~~-~~~~--~~~~~~~--------~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lie 542 (568)
T 2c31_A 474 VIIMNNGGIYKGN-EADP--QPGVISC--------TRLTRGRYDMMMEAFGGKGYVANTPAELKAALEEAVASGKPCLIN 542 (568)
T ss_dssp EEEEESSBSSCSC-CCCS--BTTBCCT--------TBCCCCCHHHHHHTTTCEEEEESSHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEeCchhHHHH-HHHh--hcCCccc--------CcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 999999985 432 1110 1111110 013468999999999999999999999999999999889999999
Q ss_pred EEeCCCCCc
Q 040733 612 VMVSYQEHV 620 (643)
Q Consensus 612 V~v~~~~~~ 620 (643)
|+++++++.
T Consensus 543 v~~~~~~~~ 551 (568)
T 2c31_A 543 AMIDPDAGV 551 (568)
T ss_dssp EEBCTTSSC
T ss_pred EEeccccCC
Confidence 999988754
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-94 Score=815.94 Aligned_cols=530 Identities=22% Similarity=0.336 Sum_probs=448.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
.|+++++|++.|+++||++|||+||+++++|+++|.+.+|++|.+|||++|+|||+||||+||||+||++|+|||++|++
T Consensus 7 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~ 86 (564)
T 2q28_A 7 MTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGL 86 (564)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHH
T ss_pred cCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHH
Confidence 36899999999999999999999999999999999876699999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccC--CCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLG--TDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g--~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+||++|+.+++|||+||||+++..++ ++++|++||.++++++|||++++.+++++++.+++||+.|.++++|||||+|
T Consensus 87 ~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 166 (564)
T 2q28_A 87 TALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDL 166 (564)
T ss_dssp HHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 99999999999999999999999887 7899999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeec
Q 040733 227 PVDVQLELAVPN-WNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCT 303 (643)
Q Consensus 227 P~Dv~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt 303 (643)
|.|++.+++... +..+ ..+.+.......++.+.+++++++|.+||||+|++|+|+. ++.+++.+|||++|+||++|
T Consensus 167 P~dv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t 245 (564)
T 2q28_A 167 PANVLAATMEKDEALTT-IVKVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPM 245 (564)
T ss_dssp EHHHHHCEEEHHHHHHT-CCCCSCSSCCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEC
T ss_pred CHHHhhccccccccccc-cccccCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHHHhCCCEEec
Confidence 999986644210 0000 0111110001235778899999999999999999999987 67899999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCcccc-CccccccCCceEEEEcCCcccccCCCCCCee
Q 040733 304 TMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMT-SKLEDFATRAKIVHIDIDSNEIGKVKLPDVS 382 (643)
Q Consensus 304 ~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t-~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~ 382 (643)
++|||.+|++||+++|.. .+++++++|+||+||++++++.+ +. ..|.+++++||||+|+.+++++++.++.
T Consensus 246 ~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~ 317 (564)
T 2q28_A 246 SMAKGILEDTHPLSAAAA-------RSFALANADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIEPQEIDSNRPIAVP 317 (564)
T ss_dssp GGGTTSSCTTCTTBCGGG-------HHHHHHHCSEEEEESCCCSGGGGGGT-TTSCTTCEEEEEESCGGGTTSSSCCSEE
T ss_pred cCccccCCCCChhhcChH-------HHhHhhcCCEEEEECCcccccccccc-cccCCCCeEEEEeCCHHHhcCCCCCCeE
Confidence 999999999999999852 46788999999999999976544 33 4566778999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC----cccCCCCCCCHHHHHHHHHhcC--CCCCeEEEe
Q 040733 383 ICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF----SYKTFGEEIPPQYAIQILNELT--DDEETIIST 456 (643)
Q Consensus 383 i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~L~~~l--~~~d~iv~~ 456 (643)
+++|++.+|++|.+.+..... .....|.+++.+.++++.. .......++++.++++.|++.+ ++ |.+++.
T Consensus 318 i~~d~~~~l~~L~~~l~~~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-d~ivv~ 393 (564)
T 2q28_A 318 VVGDIASSMQGMLAELKQNTF---TTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQ-DIYLVN 393 (564)
T ss_dssp EESCHHHHHHHHHHHHHHSCC---CCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHTTCT-TCEEEE
T ss_pred EEcCHHHHHHHHHHHhhhcCc---CCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhcCCC-CEEEEE
Confidence 999999999999988765321 1235687766554332110 0011235699999999999999 88 889988
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|.|++..|...++....|++++.++++|+||+++|+|+|++++ |+++||+++|||+|+|+++||+|++++++|++|||+
T Consensus 394 dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~ivv~ 472 (564)
T 2q28_A 394 EGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIF 472 (564)
T ss_dssp ESSHHHHHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEEEE
T ss_pred CCchHHHHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEE
Confidence 9777666666678888899999999999999999999999999 899999999999999999999999999999999999
Q ss_pred eCCCc-hhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEEEEeC
Q 040733 537 NNQYL-GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVMVS 615 (643)
Q Consensus 537 NN~~~-g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIeV~v~ 615 (643)
||++| ++..+ + ..+..+..... ....+||.++|++||+++++|++++||+++|+++++.+||+||||.++
T Consensus 473 NN~~~~~~~~~-~-~~~~~~~~~~~-------~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~ 543 (564)
T 2q28_A 473 NNGGIYRGDGV-D-LSGAGAPSPTD-------LLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQSRKPTIINVVID 543 (564)
T ss_dssp ECSBSSCSCCC-C-TTSSCCCCTTB-------CCTTCCGGGGGGGGTCEEEEECSHHHHHHHHHHHHHHTSCEEEEEEBC
T ss_pred eCchhHHHHHH-H-HhccCCccccc-------cCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 99995 55321 1 11111111110 124689999999999999999999999999999998899999999999
Q ss_pred CCCCcc
Q 040733 616 YQEHVV 621 (643)
Q Consensus 616 ~~~~~~ 621 (643)
++++..
T Consensus 544 ~~~~~~ 549 (564)
T 2q28_A 544 PAAGTE 549 (564)
T ss_dssp TTSSCC
T ss_pred cccCCC
Confidence 887553
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-95 Score=819.65 Aligned_cols=542 Identities=16% Similarity=0.147 Sum_probs=421.9
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
++++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.+|||++|+|||+||||+|||||||++|+|||++|++
T Consensus 11 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~~ 90 (578)
T 3lq1_A 11 TDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYF 90 (578)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTTH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhhh
Confidence 58999999999999999999999999999999999875 99999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHH-------HHHHHHHHhhcCCCCe
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPR-------IIKEAFFIATSGRPGP 221 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~-------~l~~A~~~A~s~~~GP 221 (643)
+||++|+.|++|||+||||+|...+|+++||++||.++|+++|||++++.+++++++ ++++||+.|.++|+||
T Consensus 91 ~gia~A~~d~vPll~itG~~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GP 170 (578)
T 3lq1_A 91 PAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGP 170 (578)
T ss_dssp HHHHHHHHTTCCEEEEEEECCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHhcCCCeEEEeCCCCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 999999999999999999999999999999999999999999999999999998764 8999999999999999
Q ss_pred EEEEcccchhhhc-cCCC-CC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHHHHh
Q 040733 222 VLIDIPVDVQLEL-AVPN-WN--QPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFVGLT 296 (643)
Q Consensus 222 V~i~iP~Dv~~~~-~~~~-~~--~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~lae~l 296 (643)
|||+||.|++..+ +... +. .+...+......+..++++.+++++++|++ |||+|++|+|+. ++.+++++|+|++
T Consensus 171 V~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~~~~~~l~~lae~~ 249 (578)
T 3lq1_A 171 VHLNFPLREPLVPILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKKELEQPMVDLAKKL 249 (578)
T ss_dssp EEEEEECCSCCCCCCSSCCC------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCTTCHHHHHHHHHHH
T ss_pred EEEECccCCCCCCCcccchhcccCccccccccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCChHHHHHHHHHHHhc
Confidence 9999999976543 1110 00 000000000000122578889999999999 999999999987 5678999999999
Q ss_pred CCceeecC-CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccC
Q 040733 297 GIPVTCTT-MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGK 375 (643)
Q Consensus 297 g~PV~tt~-~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~ 375 (643)
|+||++|+ ++++.+|++||+++|.++.......+..+.++|+||.||+++.++.+..|....+++++||||+|+.++++
T Consensus 250 ~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 329 (578)
T 3lq1_A 250 GWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDP 329 (578)
T ss_dssp TCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCCSEEEEESSCCSCHHHHHHHHHCCSSEEEEECTTCCCCCT
T ss_pred CcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCCCEEEEeCCcccchhHHHHHhcCCCCEEEEECCCCCcCCC
Confidence 99999995 57999999999999987655544555678899999999998754333222221356899999999999999
Q ss_pred CCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC---cccCCCCCCCHHHHHHHHHhcCCCCCe
Q 040733 376 VKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF---SYKTFGEEIPPQYAIQILNELTDDEET 452 (643)
Q Consensus 376 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~L~~~l~~~d~ 452 (643)
++.+++.|++|++.+|++|++.+.... ....|.+++.+.++++.. .......++++.++++.|++.+++ +.
T Consensus 330 ~~~~~~~i~~d~~~~l~~L~~~l~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ 403 (578)
T 3lq1_A 330 IKAVTDMIHCDERFLLDIMQQNMPDDA-----KDAAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVAELRRLLPD-KA 403 (578)
T ss_dssp TCCCSEEECSCHHHHHHHHHHHSCSTT-----CCHHHHHHHHHHHHHHHHHHHHHSCC----CTTHHHHHHHHHSCS-EE
T ss_pred CcCceEEEEeCHHHHHHHHHhhccCCC-----CcHHHHHHHHHHHHHHhHHHHHhhhcCCCCCHHHHHHHHHHhCCC-CC
Confidence 999999999999999999987664321 134676655544322110 001224579999999999999999 88
Q ss_pred EEEeCCChhHHHHHHhcc-ccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCe
Q 040733 453 IISTGVGQHQMWAIQFYM-YKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPV 531 (643)
Q Consensus 453 iv~~d~G~~~~~~~~~~~-~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv 531 (643)
+|+.|.|....|..+++. ..++.+++.+.|.+++|+++|+|+|+++ ++++||+|+|||||+|++|||+|++++++|+
T Consensus 404 iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~--~~~~vv~i~GDGsf~~~~~eL~ta~~~~l~~ 481 (578)
T 3lq1_A 404 GLFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASV--VFQPMFLLIGDLSFYHDMNGLLMAKKYKMNL 481 (578)
T ss_dssp EEEECSSHHHHHHHHHCCCCSSEEEEECCCSSCCSSSHHHHHHHHTT--TSSSEEEEEEHHHHHHTGGGGHHHHHTTCCE
T ss_pred eEEEeCccHHHHHHHhhcccCCCceEEeCCCccccccHHHHHHHHhc--CCCCEEEEEchHHHHhhHHHHHhhccCCCCe
Confidence 988999988778777774 4556677777665566668999999974 5899999999999999999999999999999
Q ss_pred EEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 532 KILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 532 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
++||+||++|||+++++...+. ......+++ ...+||.++|++||+++++|++.+||+++|+++++.+||+|||
T Consensus 482 ~ivv~NN~~~g~~~~~~~~~~~-~~~~~~~~~-----~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~lie 555 (578)
T 3lq1_A 482 TIVIVNNDGGGIFSFLPQANEP-KYFESLFGT-----STELDFRFAAAFYDADYHEAKSVDELEEAIDKASYHKGLDIIE 555 (578)
T ss_dssp EEEEECCC-------------------------------CCCTHHHHHHTTCEEEECCSHHHHHHHHHHHTTSSSEEEEE
T ss_pred EEEEEECCcCcccccccccccc-chhhhhccC-----CCCCCHHHHHHHcCCceEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999999865321110 011111222 2468999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccccCC
Q 040733 612 VMVSYQEHVVPMIPY 626 (643)
Q Consensus 612 V~v~~~~~~~p~~~~ 626 (643)
|.++++++..|+...
T Consensus 556 v~~~~~~~~~~~~~~ 570 (578)
T 3lq1_A 556 VKTNRHENKANHQAL 570 (578)
T ss_dssp EC-------------
T ss_pred EECCccccHHHHHhh
Confidence 999999998886643
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-94 Score=821.06 Aligned_cols=534 Identities=16% Similarity=0.156 Sum_probs=449.3
Q ss_pred CCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
..+++++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.+|||++|+|||+||||+||||+||++|+|||++
T Consensus 28 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~ 107 (604)
T 2x7j_A 28 NPITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAA 107 (604)
T ss_dssp CHHHHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHH
Confidence 44679999999999999999999999999999999998865 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCc-------HHHHHHHHHHHhhcCC
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDD-------IPRIIKEAFFIATSGR 218 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~-------i~~~l~~A~~~A~s~~ 218 (643)
|+++||++|+.+++|||+||||+++..++++++|++||.++++++|||++++.++++ +++.+++||+.|.++|
T Consensus 108 N~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~ 187 (604)
T 2x7j_A 108 NFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRP 187 (604)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCeEEEEcccchhhhccCCCC-CC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch-hhHHHHHHHH
Q 040733 219 PGPVLIDIPVDVQLELAVPNW-NQ---PCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL-NSSEELRKFV 293 (643)
Q Consensus 219 ~GPV~i~iP~Dv~~~~~~~~~-~~---~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~l~~la 293 (643)
+|||||+||.|++..+..... .. ...++.+... ++.++.+.+++++++|.+||||+|++|+|+. ++.+++++||
T Consensus 188 ~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~~~~a~~~l~~la 266 (604)
T 2x7j_A 188 MGPVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVKTG-TQSVDRESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALS 266 (604)
T ss_dssp CCEEEEEEECCSCCCCCTTSCTTCCSSSSCSSEEECC-EEECCTGGGHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHH
T ss_pred CCcEEEEcccCccCCCccccccccccccccccccccc-CccCChhhHHHHHHHHhhcCCeEEEECCCCcHHHHHHHHHHH
Confidence 999999999998764431110 00 0011111100 1124567899999999999999999999986 5668899999
Q ss_pred HHhCCceeecCCCCCCC-CCCCCCcccccC-CCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcc
Q 040733 294 GLTGIPVTCTTMGLGLF-PCTDELCLRMVG-MFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSN 371 (643)
Q Consensus 294 e~lg~PV~tt~~gkg~~-~~~hpl~lG~~g-~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~ 371 (643)
|++|+||++|+++++.+ |++||+++|++| ..+...++++++ +|+||+||+++.++.+..|....++.++||||+|+.
T Consensus 267 e~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 345 (604)
T 2x7j_A 267 KALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGG 345 (604)
T ss_dssp HHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHHHHHHHHHCTTSEEEEECTTCC
T ss_pred HhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEECCcCccHHHHHHHhhCCCCeEEEECCCCC
Confidence 99999999999887665 888999999875 667777777776 899999999987654433322122568999999999
Q ss_pred cccCCCCCCeeEecCHHHHHHHHHHHHh-hcCCCCCCChhHHHHHHHHHHHhCCC--cccCCCCCCCHHHHHHHHHhcCC
Q 040733 372 EIGKVKLPDVSICADAKLVFNRMNMILE-SKGVGFMFDFSAWREELHEQKKKYPF--SYKTFGEEIPPQYAIQILNELTD 448 (643)
Q Consensus 372 ~i~~~~~~~~~i~~D~~~~L~~L~~~l~-~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~L~~~l~ 448 (643)
++++++++++.+++|++.+|++|.+.+. .. ....|.+++.+.++.... .......++++.++++.|++.++
T Consensus 346 ~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~lp 419 (604)
T 2x7j_A 346 WRDPTQASAHMIHCNASVFAEEIMAGLTAAT------RSSEWLEKWQFVNGRFREHLQTISSEDVSFEGNLYRILQHLVP 419 (604)
T ss_dssp CCCTTSCCSEEECSCHHHHHHHHHHTSCSSC------CCCHHHHHHHHHHHHHHHHHHTSCCCCTTSHHHHHHHHHHHSC
T ss_pred ccCCCccceEEEEcCHHHHHHHHHHhhcCCC------CcHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999987663 11 123566544333221110 00012357999999999999999
Q ss_pred CCCeEEEeCCChhHHHHHHhccccC-CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHh
Q 040733 449 DEETIISTGVGQHQMWAIQFYMYKR-ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAE 527 (643)
Q Consensus 449 ~~d~iv~~d~G~~~~~~~~~~~~~~-p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~ 527 (643)
+ |.+|+.|+|++..|..+++.... +++++++.++++||+++|+|+|+++| ++++||+++|||+|+|+++||+|++++
T Consensus 420 ~-d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~eL~ta~~~ 497 (604)
T 2x7j_A 420 E-NSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHDLNGLLAAKKL 497 (604)
T ss_dssp T-TCEEEECTTHHHHHHHHHCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH-HTSCEEEEEEHHHHHHTGGGGHHHHHH
T ss_pred C-CCEEEEECCHHHHHHHHhcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc-CCCcEEEEEccHHHHhHHHHHHHhhhc
Confidence 8 89999999999999988888765 89999999999999999999999999 689999999999999999999999999
Q ss_pred CCCeEEEEEeCCCchhhHHHHH----HhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh
Q 040733 528 NIPVKILLINNQYLGMNVEYED----RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603 (643)
Q Consensus 528 ~lpv~ivV~NN~~~g~~~~~q~----~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~ 603 (643)
++|++|||+||++|+|+++++. ..|+ + .+++ ...+||.++|++||+++++|++++||+++|+++++
T Consensus 498 ~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~-~----~~~~-----~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~ 567 (604)
T 2x7j_A 498 GIPLTVILVNNDGGGIFSFLPQASEKTHFE-D----LFGT-----PTGLDFKHAAALYGGTYSCPASWDEFKTAYAPQAD 567 (604)
T ss_dssp CCCEEEEEEECSSCGGGGGSGGGSCHHHHH-H----HTTC-----CCCCCTHHHHHHTTCEEECCSSHHHHHHHCCCCCS
T ss_pred CCCeEEEEEeCCCCcccccCCCCccchhhH-h----hccC-----CCCCCHHHHHHHcCCeEEecCCHHHHHHHHHHHHh
Confidence 9999999999999999765432 1221 1 1111 24689999999999999999999999999999998
Q ss_pred CCCcEEEEEEeCCCCCc
Q 040733 604 TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 604 ~~gp~lIeV~v~~~~~~ 620 (643)
.+||+||||+++++++.
T Consensus 568 ~~gp~liev~~~~~~~~ 584 (604)
T 2x7j_A 568 KPGLHLIEIKTDRQSRV 584 (604)
T ss_dssp SCCEEEEEEECCHHHHH
T ss_pred CCCCEEEEEECCccccH
Confidence 89999999999987654
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-92 Score=797.03 Aligned_cols=524 Identities=19% Similarity=0.259 Sum_probs=446.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSA 80 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHH
Confidence 579999999999999999999999999999999998875 999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCC--------CccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAF--------QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~--------Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++||++|+.+++|||+||||++...++++.+ |..||.++++++|||++++.+++++++.+++||+.|.+++
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~- 159 (568)
T 2wvg_A 81 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK- 159 (568)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999998877542 3347999999999999999999999999999999999987
Q ss_pred CeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhC
Q 040733 220 GPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTG 297 (643)
Q Consensus 220 GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg 297 (643)
|||||+||.|++..++......+ .+.......+.++.+.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|
T Consensus 160 GPV~l~iP~dv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 237 (568)
T 2wvg_A 160 KPVYLEIACNIASMPCAAPGPAS--ALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALG 237 (568)
T ss_dssp CCEEEEEEGGGTTSEECEECCTH--HHHCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHC
T ss_pred CCEEEEechhHhcCcccCCCccc--ccccCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHHHhC
Confidence 99999999999876543111000 000000000112356799999999999999999999987 67899999999999
Q ss_pred CceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCC
Q 040733 298 IPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV 376 (643)
Q Consensus 298 ~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~ 376 (643)
+||++|++|||.+|++||+++|++ |..++..++++++++|+||+||+++.++.++.|..+.++.++||||+|+.+++++
T Consensus 238 ~Pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 317 (568)
T 2wvg_A 238 GAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGI 317 (568)
T ss_dssp CEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEETTE
T ss_pred CCEEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcCCe
Confidence 999999999999999999999985 8888888899999999999999999988887666666678999999999999876
Q ss_pred CCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHH-hCCCc-ccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 377 KLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKK-KYPFS-YKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 377 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
+..++ +++.+|++|.+.+... ...|.+ +.+.++ ..... ......++++.++++.|++.+++ +.+|
T Consensus 318 ~~~~~----~~~~~l~~L~~~l~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~iv 384 (568)
T 2wvg_A 318 RFPSV----HLKDYLTRLAQKVSKK-------TGALDF-FKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTP-NTTV 384 (568)
T ss_dssp EEESC----CHHHHHHHHHHHCCCC-------CHHHHH-HHHTTCCSCCCCCCCCTTSBCCHHHHHHHHHTTCCT-TEEE
T ss_pred ecCCC----CHHHHHHHHHHhcccc-------ccchhh-hhhhhhhcccccccCCCCCccCHHHHHHHHHHhCCC-CCEE
Confidence 55443 4799999998765421 234643 222221 11111 11123469999999999999998 9999
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
++|+|++. |..+++..+++++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|++||
T Consensus 385 ~~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~ta~~~~l~~~iv 463 (568)
T 2wvg_A 385 IAETGDSW-FNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIF 463 (568)
T ss_dssp EECSSHHH-HHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred EEcCcHHH-HHHhhcccCCCCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHHHHHHcCCCcEEE
Confidence 99999985 78899998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCC---------CEEEeCChhHHHHHHHHHHhC-
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI---------PAARVTKKKDVRAAIQLMLET- 604 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~---------~~~~V~~~~eL~~al~~al~~- 604 (643)
|+||++|+|+++++...|. ....+||.++|++||+ ++++|++.+||+++|+++++.
T Consensus 464 v~NN~~~~~~~~~~~~~~~--------------~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~~~~el~~al~~a~~~~ 529 (568)
T 2wvg_A 464 LINNYGYTIEVMIHDGPYN--------------NIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANT 529 (568)
T ss_dssp EEECSSCHHHHTTSCCGGG--------------CCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCC
T ss_pred EEECCcceEeeeeccCCCc--------------CCCCCCHHHHHHHhCCCcccccCCcceEEeCCHHHHHHHHHHHHhcC
Confidence 9999999999865422111 1245899999999999 899999999999999999987
Q ss_pred CCcEEEEEEeCCCCCccccc
Q 040733 605 PGPYLLDVMVSYQEHVVPMI 624 (643)
Q Consensus 605 ~gp~lIeV~v~~~~~~~p~~ 624 (643)
+||+||||++++++...++.
T Consensus 530 ~gp~liev~~~~~~~~~~~~ 549 (568)
T 2wvg_A 530 DGPTLIECFIGREDCTEELV 549 (568)
T ss_dssp SSCEEEEEECCTTCCCHHHH
T ss_pred CCcEEEEEEcCccccCHHHH
Confidence 99999999999988665443
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-92 Score=794.36 Aligned_cols=522 Identities=19% Similarity=0.250 Sum_probs=445.7
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (566)
T 2vbi_A 2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISA 80 (566)
T ss_dssp CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHH
Confidence 479999999999999999999999999999999998875 999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCC--------CccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAF--------QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~--------Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++||++|+.+++|||+||||++...++++.+ |..||.++++++|||++++.+++++++.+++||+.|.+++
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~- 159 (566)
T 2vbi_A 81 MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRER- 159 (566)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999998877642 2238999999999999999999999999999999999987
Q ss_pred CeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhC
Q 040733 220 GPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTG 297 (643)
Q Consensus 220 GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg 297 (643)
|||||+||.|++.+++......+ .+.......+.++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|
T Consensus 160 GPV~l~iP~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~ 237 (566)
T 2vbi_A 160 KPAYLDIACNIASEPCVRPGPVS--SLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQ 237 (566)
T ss_dssp CCEEEEEETTTTTSBCCEECCCS--CSCCCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHC
T ss_pred CCEEEEechhhcCCeecCCCCCc--ccCCCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhC
Confidence 99999999999876543111111 110000000112346799999999999999999999997 67899999999999
Q ss_pred CceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCC
Q 040733 298 IPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV 376 (643)
Q Consensus 298 ~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~ 376 (643)
+||++|++|||.+|++||+++|++ |..++..++++++++|+||+||+++.++.++.|..+.++.++||||+|+.+++++
T Consensus 238 ~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 317 (566)
T 2vbi_A 238 CAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVDGR 317 (566)
T ss_dssp CEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEETTE
T ss_pred CCEEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeCCc
Confidence 999999999999999999999985 8888888899999999999999999988887776666778999999999999986
Q ss_pred CCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 377 KLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 377 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
+..++ +++.+|++|.+.+... ...|.+ +.+.+.... .. ....++++..+++.|++.+++ |.+|++
T Consensus 318 ~~~~~----~~~~~l~~L~~~l~~~-------~~~~~~-~~~~~~~~~-~~-~~~~~l~~~~~~~~l~~~l~~-~~iv~~ 382 (566)
T 2vbi_A 318 AYDGF----TLRAFLQALAEKAPAR-------PASAQK-SSVPTCSLT-AT-SDEAGLTNDEIVRHINALLTS-NTTLVA 382 (566)
T ss_dssp EEESS----CHHHHHHHHHHHCCCC-------CHHHHT-SCCCCCCCC-CC-CTTSCCCHHHHHHHHHHHCCT-TEEEEE
T ss_pred ccCCc----cHHHHHHHHHHhcccc-------ccchhh-hhhhhhccC-CC-CCCCccCHHHHHHHHHHhcCC-CCEEEE
Confidence 65554 4688999988765321 134522 111111110 11 123469999999999999998 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++. |..++++.+++++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 383 d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~ 461 (566)
T 2vbi_A 383 ETGDSW-FNAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLI 461 (566)
T ss_dssp CSSHHH-HHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEE
T ss_pred CCchHH-HhhhheECCCCCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEEEE
Confidence 999985 8888999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCC-----CEEEeCChhHHHHHHHHHHhC-CCcEEE
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI-----PAARVTKKKDVRAAIQLMLET-PGPYLL 610 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~eL~~al~~al~~-~gp~lI 610 (643)
||++|+|++.++...|. ....+||.++|++||+ ++++|++.+||+++|+++++. +||.||
T Consensus 462 nN~~~~~~~~~~~~~~~--------------~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~li 527 (566)
T 2vbi_A 462 NNRGYVIEIAIHDGPYN--------------YIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKANTRGPTLI 527 (566)
T ss_dssp ECSSCHHHHTTSCCGGG--------------CCCCCCTTTHHHHHHTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEE
T ss_pred ECCcceEEEeeccCCcc--------------CCCCCCHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHHHHhcCCCcEEE
Confidence 99999999865522211 1246899999999999 999999999999999999987 999999
Q ss_pred EEEeCCCCCccccc
Q 040733 611 DVMVSYQEHVVPMI 624 (643)
Q Consensus 611 eV~v~~~~~~~p~~ 624 (643)
||++++++...++.
T Consensus 528 ev~~~~~~~~~~~~ 541 (566)
T 2vbi_A 528 ECQIDRTDCTDMLV 541 (566)
T ss_dssp EEECCTTCCCHHHH
T ss_pred EEEeCcccCcHHHH
Confidence 99999988665443
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-92 Score=797.33 Aligned_cols=523 Identities=16% Similarity=0.142 Sum_probs=409.0
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+++++|+|++.|+++||++|||+||+++++|+++|.+.+ |++|.+|||++|+|||+||||+|||||||++|+|||++|+
T Consensus 7 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~ 86 (556)
T 3hww_A 7 NRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANL 86 (556)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTT
T ss_pred hhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhh
Confidence 578999999999999999999999999999999998765 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCc------HHHHHHHHHHHhhcCCCCe
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDD------IPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~------i~~~l~~A~~~A~s~~~GP 221 (643)
++||++||.|++|||+||||+++..+|+++||++||.++|+++|||++++.++++ +++++++|| .++||||
T Consensus 87 ~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~---~~~r~GP 163 (556)
T 3hww_A 87 YPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHAL---GTLHAGG 163 (556)
T ss_dssp HHHHHHHHHHCCCEEEEEEECCGGGSSSSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHH---HSCCSSC
T ss_pred hHHHHHHHHhCCCeEEEeCCCCHHHhccCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHH---hcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999875 899999998 3689999
Q ss_pred EEEEcccchhhh-ccCCC---CCCCCC--CCCCCCCCCCCCCHHHH-HHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHH
Q 040733 222 VLIDIPVDVQLE-LAVPN---WNQPCK--LPSCISSLPKEPDELAL-RQTLKLIVESKNPVLCVGGGCLNSSEELRKFVG 294 (643)
Q Consensus 222 V~i~iP~Dv~~~-~~~~~---~~~~~~--~p~~~~~~~~~~~~~~i-~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae 294 (643)
|||+||.|++.. ++... +..+.. .+.+.+.. ..+..+.+ ++++++|.+||||+|++|++..++.+++++|+|
T Consensus 164 V~i~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~A~rPvIl~G~~~~~a~~~l~~lae 242 (556)
T 3hww_A 164 VHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWL-REAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQ 242 (556)
T ss_dssp EEEEEECCSCCSCCCSSTTHHHHHTTGGGGGCCSCSS-CCCCCCCCCCCTTHHHHTTSCEEEEECBCCHHHHHHHHHHHH
T ss_pred EEEeCCcCCCCCCCccccccccccccccccccccccc-cccccccchhhhhhhhccCCCeEEEECCCChHHHHHHHHHHH
Confidence 999999986543 12110 000000 00001000 00111112 245567889999999999876688899999999
Q ss_pred HhCCceeecC-CCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccccCccc-cccCCceEEEEcCCccc
Q 040733 295 LTGIPVTCTT-MGLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLE-DFATRAKIVHIDIDSNE 372 (643)
Q Consensus 295 ~lg~PV~tt~-~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~iI~Id~d~~~ 372 (643)
++|+||++|+ +++|.++++||+++| +..++++++++|+||+||+++++..+..|. .+. ..++||||+|+.+
T Consensus 243 ~~~~PV~~t~~~~~~~~~~~~~~~lg------~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~ 315 (556)
T 3hww_A 243 TLGWPLIGDVLSQTGQPLPCADLWLG------NAKATSELQQAQIVVQLGSSLTGKRLLQWQASCE-PEEYWIVDDIEGR 315 (556)
T ss_dssp HHTCCEEECTTTCSCCSSCCHHHHTT------SHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCC-CSEEEEEESSCSC
T ss_pred hcCCEEEEccCCCCCCCcCcHHHHhc------CchhhhcccCCCEEEEcCCCcccHHHHHHHhcCC-CCeEEEECCCCcc
Confidence 9999999997 489999999998874 467889999999999999999776554332 343 3489999999999
Q ss_pred ccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCe
Q 040733 373 IGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEET 452 (643)
Q Consensus 373 i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~ 452 (643)
+++++++++.|++|++.+|++|.+. . ...+...|.+...+..... ....+++++.++++.|++.+++ |.
T Consensus 316 ~~~~~~~~~~i~~d~~~~l~~l~~~----~--~~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~-~~ 384 (556)
T 3hww_A 316 LDPAHHRGRRLIANIADWLELHPAE----K--RQPWCVEIPRLAEQAMQAV----IARRDAFGEAQLAHRICDYLPE-QG 384 (556)
T ss_dssp CCTTCCSEEEEESCHHHHHHHSCCC----C--CCCCCSSHHHHHHHHHHHH----HTTCCSSSHHHHHHTGGGTCCT-TC
T ss_pred CCCCCCceEEEEcCHHHHHHhcccc----c--chHHHHHHHHHHHHHHHHH----hhcccCcCHHHHHHHHHHhCCC-CC
Confidence 9999999999999999999886421 1 0111122222111111111 1124679999999999999999 88
Q ss_pred EEEeCCChhHHHHHHhccccCCCeEEec-CCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCe
Q 040733 453 IISTGVGQHQMWAIQFYMYKRARQLLTS-SGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPV 531 (643)
Q Consensus 453 iv~~d~G~~~~~~~~~~~~~~p~~~~~~-~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv 531 (643)
+|+.|.+....+...+...+...+++.+ +++|.||+ +|+|+|++++ ++++||+++|||||+|++|||+|++++++|+
T Consensus 385 iv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv 462 (556)
T 3hww_A 385 QLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQVSAPL 462 (556)
T ss_dssp EEEECSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-HCCCEEEEEEHHHHHHTGGGHHHHTTCSSCE
T ss_pred eEEEeCCcHHHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc-CCCcEEEEEccHHhhhcchhhHhhcccCCCc
Confidence 8887777543222223223334456665 55788888 9999999999 7899999999999999999999999999999
Q ss_pred EEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcEEEE
Q 040733 532 KILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLD 611 (643)
Q Consensus 532 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~lIe 611 (643)
++||+||++|+|++.++....... ..+. ....+||.++|++||+++++|++.+||+++|+++++.+||+|||
T Consensus 463 ~ivv~NN~~~~~~~~~~~~~~~~~---~~~~-----~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~gp~lie 534 (556)
T 3hww_A 463 VLIVVNNNGGQIFSLLPTPQSERE---RFYL-----MPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIE 534 (556)
T ss_dssp EEEEEESCC--------------------CC-----CCCCCCSHHHHHHTTCEEECCSSHHHHHHHHHHHTTSSSEEEEE
T ss_pred EEEEEECCCCCcccCCCCcchhHH---Hhcc-----CCCCCCHHHHHHHcCCcEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999876543211101 1111 13568999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccc
Q 040733 612 VMVSYQEHVVPM 623 (643)
Q Consensus 612 V~v~~~~~~~p~ 623 (643)
|+++++++..++
T Consensus 535 v~~~~~~~~~~l 546 (556)
T 3hww_A 535 MVVNDTDGAQTL 546 (556)
T ss_dssp EECCSSHHHHHH
T ss_pred EECCccccHHHH
Confidence 999998876543
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-92 Score=794.06 Aligned_cols=521 Identities=18% Similarity=0.279 Sum_probs=440.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.+|||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 81 (563)
T 2vk8_A 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGELSA 81 (563)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHH
Confidence 479999999999999999999999999999999998875 999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCccccc----------CCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLL----------GTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~----------g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
++||++|+.+++|||+||||+++..+ |++++| ||.++++++|||++++.+++++++.+++||+.|.++
T Consensus 82 ~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 159 (563)
T 2vk8_A 82 LNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTYVT 159 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSS--HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchH--HHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998763 567888 589999999999999999999999999999999988
Q ss_pred CCCeEEEEcccchhhhccCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHH
Q 040733 218 RPGPVLIDIPVDVQLELAVPNW-NQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVG 294 (643)
Q Consensus 218 ~~GPV~i~iP~Dv~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae 294 (643)
+ |||||+||.|++.+++.... ..+ .+.......+.++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|
T Consensus 160 ~-GPV~l~iP~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae 236 (563)
T 2vk8_A 160 Q-RPVYLGLPANLVDLNVPAKLLQTP--IDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLID 236 (563)
T ss_dssp T-SCEEEEEETTGGGSEEEGGGGGSC--CCCSCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHH
T ss_pred C-CCEEEEechhhhcCccCCccCcCc--ccccCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHH
Confidence 6 99999999999876543210 001 111110000112345799999999999999999999986 67899999999
Q ss_pred HhCCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccc
Q 040733 295 LTGIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEI 373 (643)
Q Consensus 295 ~lg~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i 373 (643)
++|+||++|++|||.+|++||+++|++ |..++..++++++++|+||+||++++++.++.+..+.+++++||||+|+.++
T Consensus 237 ~~~~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 316 (563)
T 2vk8_A 237 LTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKI 316 (563)
T ss_dssp HHCCCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEE
T ss_pred HhCCCEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEE
Confidence 999999999999999999999999985 8888999999999999999999999998887776555678999999999999
Q ss_pred cCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeE
Q 040733 374 GKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETI 453 (643)
Q Consensus 374 ~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~i 453 (643)
++++..++ +++.+|++|.+.+..... .|.+ +.+.+.++.........++++.++++.|++.+++ |.+
T Consensus 317 ~~~~~~~~----~~~~~l~~L~~~l~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~i 383 (563)
T 2vk8_A 317 RNATFPGV----QMKFVLQKLLTTIADAAK-------GYKP-VAVPARTPANAAVPASTPLKQEWMWNQLGNFLQE-GDV 383 (563)
T ss_dssp TTEEEETC----CHHHHHHHHHHHHHHHTT-------TCCC-CCCCCCCCCCCCCCTTCBCCHHHHHHHHTTTCCT-TCE
T ss_pred CCcccCCc----CHHHHHHHHHHhhccccc-------hhhh-hhhhhhcccccCCCCCCCcCHHHHHHHHHHhCCC-CCE
Confidence 99866555 458999999877654221 1211 0111111111111123569999999999999998 999
Q ss_pred EEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCC----CeEEEEecCccccCCHHHHHHHHHhCC
Q 040733 454 ISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPG----AIVVDIDGDGSFIMNLQELAAIKAENI 529 (643)
Q Consensus 454 v~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~----~~Vv~i~GDGsf~m~~~eL~Ta~~~~l 529 (643)
+++|+|++. |..+++..++++++++++++|+||+++|+|+|+++|.|+ ++||+++|||+|+|+++||+|++++++
T Consensus 384 v~~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~el~ta~~~~l 462 (563)
T 2vk8_A 384 VIAETGTSA-FGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGL 462 (563)
T ss_dssp EEECTTHHH-HHGGGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHHTTC
T ss_pred EEECCchHH-HHHhhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHHHHHHHHcCC
Confidence 999999985 677888888899999999999999999999999999887 999999999999999999999999999
Q ss_pred CeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC---EEEeCChhHHHHHHH-HHHhCC
Q 040733 530 PVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP---AARVTKKKDVRAAIQ-LMLETP 605 (643)
Q Consensus 530 pv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~---~~~V~~~~eL~~al~-~al~~~ 605 (643)
|+++||+||++|+|++.++.. ..... ....+||.++|++||++ +++|++.+||+++|+ ++++.+
T Consensus 463 ~~~ivv~nN~~~~~~~~~~~~----~~~~~--------~~~~~d~~~~a~a~G~~~~~~~~v~~~~el~~al~~~a~~~~ 530 (563)
T 2vk8_A 463 KPYLFVLNNDGYTIQKLIHGP----KAQYN--------EIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDN 530 (563)
T ss_dssp CCEEEEEESSSCHHHHHHSCT----TCGGG--------CCCCCCGGGHHHHTTCSSEEEEEECBHHHHHHHHTCTTTTSC
T ss_pred CcEEEEEECCcchhhhhhhCC----CCCcc--------cCCCCCHHHHHHHhCCCCCcEEEecCHHHHHHHHHHHHHhCC
Confidence 999999999999999864311 11111 12458999999999999 999999999999999 888754
Q ss_pred -CcEEEEEEeCCCCCcc
Q 040733 606 -GPYLLDVMVSYQEHVV 621 (643)
Q Consensus 606 -gp~lIeV~v~~~~~~~ 621 (643)
+|+||||++++++...
T Consensus 531 ~~p~liev~~~~~~~~~ 547 (563)
T 2vk8_A 531 SKIRMIEVMLPVFDAPQ 547 (563)
T ss_dssp SSEEEEEEECCTTCCCH
T ss_pred CCcEEEEEEeCccccCH
Confidence 7999999999887654
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-90 Score=781.75 Aligned_cols=516 Identities=19% Similarity=0.250 Sum_probs=438.6
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++++|++.|+++||++|||+||+++++|+++|.+.+ |++|.++||++|+|||+||||+|| ++||++|+|||++|+
T Consensus 4 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N~ 82 (552)
T 1ovm_A 4 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGELSA 82 (552)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHT
T ss_pred ccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHHH
Confidence 579999999999999999999999999999999999875 999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCccccc----------CCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLL----------GTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~----------g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
++||++|+.+++|||+||||+|...+ |.+.+| ||.++++++|||++++.+ +++++.+++|++.|+++
T Consensus 83 ~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~~ 159 (552)
T 1ovm_A 83 MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR--HFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLRE 159 (552)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCS--HHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHH--HHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998764 445778 489999999999999999 99999999999999988
Q ss_pred CCCeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHH
Q 040733 218 RPGPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGL 295 (643)
Q Consensus 218 ~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~ 295 (643)
+ |||||+||.|++.+++... ...++...+...+.++.+.+++++++|.+||||+|++|+|+. ++.+++++|+|+
T Consensus 160 ~-GPV~l~iP~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~ 235 (552)
T 1ovm_A 160 R-RPGYLMLPADVAKKAATPP---VNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKE 235 (552)
T ss_dssp T-CCEEEEEEHHHHHSBCCCC---SSCCCCCCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHH
T ss_pred C-CCEEEEeehhhccCccCCC---cccccccCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHHHHHHH
Confidence 6 9999999999987654321 001111110000112356799999999999999999999986 678999999999
Q ss_pred hCCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCccccc
Q 040733 296 TGIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374 (643)
Q Consensus 296 lg~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~ 374 (643)
+|+||++|++|||.+|++||+++|++ |..++..++++++++|+||+||++++++.++.+..+.++.++||||+|+.+++
T Consensus 236 ~~~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 315 (552)
T 1ovm_A 236 VPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVG 315 (552)
T ss_dssp SCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEET
T ss_pred HCCCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChheeC
Confidence 99999999999999999999999995 88889999999999999999999999988877766666789999999999999
Q ss_pred CCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEE
Q 040733 375 KVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETII 454 (643)
Q Consensus 375 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv 454 (643)
+++..++ +++.+|++|.+ +.... . .|.+...+ +..........++++..+++.|++.+++ +.+|
T Consensus 316 ~~~~~~~----~~~~~l~~L~~-l~~~~---~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~iv 379 (552)
T 1ovm_A 316 DVWFTGI----PMNQAIETLVE-LCKQH---V----HAGLMSSS---SGAIPFPQPDGSLTQENFWRTLQTFIRP-GDII 379 (552)
T ss_dssp TEEEESC----CHHHHHHHHHH-HHHTS---C----CC-----------------CCSBCCHHHHHHHHHHHCCT-TCEE
T ss_pred CcccCCc----cHHHHHHHHHh-Ccccc---c----chhhhhhh---ccccccCCCCCccCHHHHHHHHHHhcCC-CCEE
Confidence 8766554 45899999987 65421 1 23221111 1111111123569999999999999998 9999
Q ss_pred EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEE
Q 040733 455 STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKIL 534 (643)
Q Consensus 455 ~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 534 (643)
+.|+|++. |..++++.++++++++++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|+.++++|+++|
T Consensus 380 v~d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~iv 458 (552)
T 1ovm_A 380 LADQGTSA-FGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIIL 458 (552)
T ss_dssp EECTTHHH-HHHTTCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHHHHHHTTCCCEEE
T ss_pred EECCchHH-HHHHhcccCCCCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHHHHHHhCCCCEEE
Confidence 99999986 67888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCC----CEEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 535 LINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI----PAARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 535 V~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~----~~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
|+||++|+|++.++ +...... ....+||.++|++||+ ++++|++.+||+++|+++++.+||+||
T Consensus 459 v~nN~~~~~~~~~~----~~~~~~~--------~~~~~d~~~~a~a~G~~~~~~~~~v~~~~~l~~al~~a~~~~gp~li 526 (552)
T 1ovm_A 459 VLNNEGYTVERAIH----GAEQRYN--------DIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLI 526 (552)
T ss_dssp EEESSSCHHHHHHS----CTTCGGG--------CCCCCCGGGSTTTSCSSCCEEEEEECBHHHHHHHHHHHTTCSSEEEE
T ss_pred EEECCCCeEEEeec----cCCCCcc--------cCCCCCHHHHHHHhCCCcCCCEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 99999999988642 1111111 1346899999999999 999999999999999999999999999
Q ss_pred EEEeCCCCCcc
Q 040733 611 DVMVSYQEHVV 621 (643)
Q Consensus 611 eV~v~~~~~~~ 621 (643)
||.+++++...
T Consensus 527 ev~~~~~~~~~ 537 (552)
T 1ovm_A 527 EVMLPKADIPP 537 (552)
T ss_dssp EEECCTTCCCH
T ss_pred EEEcCcccCCH
Confidence 99999887654
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-90 Score=780.28 Aligned_cols=514 Identities=21% Similarity=0.290 Sum_probs=429.2
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+|+++++|++.|+++||++|||+||+++++|+++|.+.+ +++|.++||++|+|||+||||+||||+||++|+|||++|+
T Consensus 20 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~N~ 99 (565)
T 2nxw_A 20 HMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNM 99 (565)
T ss_dssp CCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred CcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHH
Confidence 479999999999999999999999999999999998766 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCC-----CccC-HHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCe
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAF-----QEIP-VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGP 221 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~-----Q~~d-~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GP 221 (643)
++||++|+.+++|||+||||++....+++.+ |++| |.++|+++|||++++.+++++++.+++||+.|.++ +||
T Consensus 100 ~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GP 178 (565)
T 2nxw_A 100 VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ-SRP 178 (565)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH-TCC
T ss_pred HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC-CCC
Confidence 9999999999999999999999999988774 7788 99999999999999999999999999999999987 599
Q ss_pred EEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCc
Q 040733 222 VLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIP 299 (643)
Q Consensus 222 V~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~P 299 (643)
|||+||.|++.+++.+.. ..+. . ...+.+.++.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+|
T Consensus 179 V~l~iP~Dv~~~~~~~~~----~~~~-~-~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~P 252 (565)
T 2nxw_A 179 VYLEIPRNMVNAEVEPVG----DDPA-W-PVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVP 252 (565)
T ss_dssp EEEEEEGGGTTCBCCCCC----CCCC-C-CCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCSC
T ss_pred EEEECChhhhcCcCCCcc----ccCC-C-CCCchhhHHHHHHHHHHHHcCCCCEEEECCCcchhchHHHHHHHHHHhCCC
Confidence 999999999887654211 0111 0 000112346789999999999999999999886 5789999999999999
Q ss_pred eeecCCCCCCCCCCCCCcccc-cCCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCC
Q 040733 300 VTCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKL 378 (643)
Q Consensus 300 V~tt~~gkg~~~~~hpl~lG~-~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~ 378 (643)
|++|++|||.+|++||+++|+ .|..++..++++++++|+||+||+++.++.++.+....+..++||||+|+.++++++.
T Consensus 253 v~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~~~~~ 332 (565)
T 2nxw_A 253 VVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLGYHTY 332 (565)
T ss_dssp EEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTSCGGGEEEEETTEEEETTEEE
T ss_pred EEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCCceeeCCccc
Confidence 999999999999999999998 5888999999999999999999999988877665443345689999999999998755
Q ss_pred CCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCC--CCeEEEe
Q 040733 379 PDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDD--EETIIST 456 (643)
Q Consensus 379 ~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~--~d~iv~~ 456 (643)
.++.+ ..+|++|.+.+.... ..|.+. .+ + .++........++++..+++.|++.+++ ++.++++
T Consensus 333 ~~~~~----~~~l~~L~~~l~~~~-------~~w~~~-~~-~-~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~~~iv~~~ 398 (565)
T 2nxw_A 333 ADIPL----AGLVDALLERLPPSD-------RTTRGK-EP-H-AYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAA 398 (565)
T ss_dssp ESCCH----HHHHHHHHHTSCCCC-------CCCCCS-CS-S-CCCCCCCCSSSBCCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCccH----HHHHHHHHHhccccc-------hhhhhh-hh-h-hccccccCCCCccCHHHHHHHHHHhcccccCCEEEEe
Confidence 55444 678888876543211 123211 00 0 1111111123569999999999999975 3444489
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++. |..+++ .+++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|++|||+
T Consensus 399 d~G~~~-~~~~~~---~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~GDG~~~~~~~~l~ta~~~~l~~~ivv~ 474 (565)
T 2nxw_A 399 DMGDCL-FTAMDM---IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGIDPIVILF 474 (565)
T ss_dssp CSSHHH-HHHTTS---CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEEHHHHHHHGGGGGGHHHHTCCCEEEEE
T ss_pred cchHHH-HHHHhC---CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEechHHHhhHHHHHHHHHhCCCCEEEEE
Confidence 999986 554444 6788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHhCCCcE-EEEEEeC
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPY-LLDVMVS 615 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~~~gp~-lIeV~v~ 615 (643)
||++|+|++++|... . .. ....+||.++|++||+++++|++.+||+++|+++++.+||. ||||.++
T Consensus 475 nN~~~~~~~~~~~~~---~--~~--------~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~~liev~~~ 541 (565)
T 2nxw_A 475 NNASWEMLRTFQPES---A--FN--------DLDDWRFADMAAGMGGDGVRVRTRAELKAALDKAFATRGRFQLIEAMIP 541 (565)
T ss_dssp ECSBCHHHHHHCTTC---G--GG--------BCCCCCHHHHTGGGTSEEEEECBHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred ECCCCcEEeeecccC---C--CC--------cCCCCCHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 999999998764210 0 11 12468999999999999999999999999999999888988 9999999
Q ss_pred CCCCc
Q 040733 616 YQEHV 620 (643)
Q Consensus 616 ~~~~~ 620 (643)
+++..
T Consensus 542 ~~~~~ 546 (565)
T 2nxw_A 542 RGVLS 546 (565)
T ss_dssp TTCCC
T ss_pred cccCC
Confidence 87653
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-88 Score=763.21 Aligned_cols=515 Identities=18% Similarity=0.298 Sum_probs=435.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
.++++|+|++.|+++||++|||+||+++++|+++|.+.+ |++|.++||++|+|||+||||+|| |+||++|+|||++|+
T Consensus 24 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~ 102 (570)
T 2vbf_A 24 MYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSA 102 (570)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHH
Confidence 479999999999999999999999999999999998875 999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCC--CC-----cc-CHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDA--FQ-----EI-PVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~--~Q-----~~-d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++||++|+.+++|||+||||++...++++. +| +. +|..+++++|||++++.+ ++++..+++|++.|.++|
T Consensus 103 ~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~- 180 (570)
T 2vbf_A 103 INGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKER- 180 (570)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCC-
Confidence 999999999999999999999987765443 22 12 488999999999999999 999999999999999986
Q ss_pred CeEEEEcccchhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhC
Q 040733 220 GPVLIDIPVDVQLELAVPNWNQPCKLPSCISSLPKEPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTG 297 (643)
Q Consensus 220 GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg 297 (643)
|||||+||.|++.+++.... . .++.......+.+ .+.+++++++|.+||||+|++|+|+. ++.+++++|+|++|
T Consensus 181 GPV~l~iP~d~~~~~~~~~~-~--~~~~~~~~~~~~~-~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 256 (570)
T 2vbf_A 181 KPVYINLPVDVAAAKAEKPA-L--SLEKESSTTNTTE-QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETK 256 (570)
T ss_dssp CCEEEEEEHHHHTSBCCCCS-S--CCC------CHHH-HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHC
T ss_pred CCEEEEcchhhhcCcccCCc-c--cccccCCCCCccH-HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHHHHHC
Confidence 99999999999876553210 0 1110010000011 56799999999999999999999987 67899999999999
Q ss_pred CceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCC
Q 040733 298 IPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKV 376 (643)
Q Consensus 298 ~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~ 376 (643)
+||++|++|||.+|++||+++|++ |..++..++++++++|+||+||+++.++.++.|..+.++.++||||+|+.+++++
T Consensus 257 ~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 336 (570)
T 2vbf_A 257 LPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIFNK 336 (570)
T ss_dssp CCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEETTE
T ss_pred CCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHhCCe
Confidence 999999999999999999999985 8888899999999999999999999988887666555678999999999999987
Q ss_pred CCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcccCCCCCCCHHHHHHHHHhcCCCCCeEEEe
Q 040733 377 KLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFGEEIPPQYAIQILNELTDDEETIIST 456 (643)
Q Consensus 377 ~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~d~iv~~ 456 (643)
+..++ |++.+|++|.+.+... . |. +.. +++.... .....++++..+++.|++.+++ |.+|+.
T Consensus 337 ~~~~~----~~~~~l~~L~~~l~~~-----~----~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~-~~iv~~ 398 (570)
T 2vbf_A 337 VVEDF----DFRAVVSSLSELKGIE-----Y----EG--QYI-DKQYEEF-IPSSAPLSQDRLWQAVESLTQS-NETIVA 398 (570)
T ss_dssp EECSS----CHHHHHHTGGGCCSCC-----C----CS--CCC-CCCCCCC-CCCSSBCCHHHHHHHHHHHCCS-SEEEEE
T ss_pred eecCC----CHHHHHHHHHHhcccc-----c----cc--cch-hhhcccc-CCCCCCcCHHHHHHHHHHhcCC-CCEEEE
Confidence 66544 6899998887654321 0 21 000 0011111 1123569999999999999998 999999
Q ss_pred CCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEE
Q 040733 457 GVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLI 536 (643)
Q Consensus 457 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 536 (643)
|+|++. |..+++..+.++++++++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 399 d~G~~~-~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~ 477 (570)
T 2vbf_A 399 EQGTSF-FGASTIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFII 477 (570)
T ss_dssp CTTHHH-HHHTTSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEE
T ss_pred eCCHHH-HHHHhcccCCCCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCCEEEEE
Confidence 999986 5677788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCC-----EEEeCChhHHHHHHHH-HHhCCCcEEE
Q 040733 537 NNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP-----AARVTKKKDVRAAIQL-MLETPGPYLL 610 (643)
Q Consensus 537 NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~-----~~~V~~~~eL~~al~~-al~~~gp~lI 610 (643)
||++|+|++.++.. +.... ....+||.++|++||++ +++|++.+||+++|++ +++.+||+||
T Consensus 478 nN~~~~~~~~~~~~----~~~~~--------~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~~~~~p~li 545 (570)
T 2vbf_A 478 NNDGYTVEREIHGP----TQSYN--------DIPMWNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWI 545 (570)
T ss_dssp ESSSCHHHHHHSCT----TCGGG--------CCCCCCGGGHHHHTTCCTTTEEEEEECBHHHHHHHHHHHHHCTTSEEEE
T ss_pred ECCchHHHHHHhcc----CCCcc--------CCCCCCHHHHHHHcCCCcCCcceEEecCHHHHHHHHHHHHhcCCCcEEE
Confidence 99999999865311 11011 13468999999999998 8999999999999998 4778999999
Q ss_pred EEEeCCCCCcc
Q 040733 611 DVMVSYQEHVV 621 (643)
Q Consensus 611 eV~v~~~~~~~ 621 (643)
||.+++++...
T Consensus 546 ev~~~~~~~~~ 556 (570)
T 2vbf_A 546 ELVLEKEDAPK 556 (570)
T ss_dssp EEECCTTCCCH
T ss_pred EEEcCcccccH
Confidence 99999887543
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.6e-22 Score=236.12 Aligned_cols=185 Identities=15% Similarity=0.186 Sum_probs=149.1
Q ss_pred CCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhcc----ccCCC---eEEecC--CCcccccchHH---------
Q 040733 431 GEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYM----YKRAR---QLLTSS--GFGSMGFGLPA--------- 492 (643)
Q Consensus 431 ~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~----~~~p~---~~~~~~--~~g~mG~glpa--------- 492 (643)
+..|.+..+++.|.+++++ +.+|+.|+|++.+|+.+++. .+.++ .|..|. +.|.||+|+|+
T Consensus 811 C~GCge~~~ik~l~ql~g~-~~iian~tGc~siw~~~~~~~~~~~~~~g~~p~~~~Slf~~~a~mG~G~~~~~~~~~~~~ 889 (1231)
T 2c42_A 811 CSGCGETPYVRVITQLFGE-RMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARRTHL 889 (1231)
T ss_dssp CTTCSSHHHHHHHHHHHGG-GEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHhcCC-CeEEEecCchHHHHHhhcccCCcccccCCCCcceecccCcchHHHHHHHHHHHHHHHHHH
Confidence 4557788999999999998 99999999999999999853 32333 788773 67999999999
Q ss_pred ------------------HH--------------------HHHHhCCC----------------CeEEEEecCc-cccCC
Q 040733 493 ------------------AM--------------------GAAVANPG----------------AIVVDIDGDG-SFIMN 517 (643)
Q Consensus 493 ------------------Ai--------------------GaalA~p~----------------~~Vv~i~GDG-sf~m~ 517 (643)
|| |++++.|+ ++||+|+||| +|+|+
T Consensus 890 ~~~~~~~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~mg 969 (1231)
T 2c42_A 890 ADLAAKALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIG 969 (1231)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHTTT
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHHcc
Confidence 99 99998544 7899999999 99999
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE---e-CChhH
Q 040733 518 LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR---V-TKKKD 593 (643)
Q Consensus 518 ~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~---V-~~~~e 593 (643)
+|||.|++++++|+++||+||+.|||++. |...+......+.+ .+.......+||.++|++||+.+++ + ++++|
T Consensus 970 ~~eL~ta~~~~~~v~iiVlnN~~yg~tg~-Q~s~~t~~~~~t~~-~~~g~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~ 1047 (1231)
T 2c42_A 970 YGGLDHVLASGEDVNVFVMDTEVYSNTGG-QSSKATPTGAVAKF-AAAGKRTGKKDLARMVMTYGYVYVATVSMGYSKQQ 1047 (1231)
T ss_dssp HHHHHHHHHTTCSCEEEEEECSSBTTTTC-BCCTTSCTTCCBBT-BTTCCSSCCCCHHHHHHTTSSSEEEEECTTTCHHH
T ss_pred hHHHHHHHHhCCCeEEEEEECHHHHhHHh-hhccCCCCCceeee-cccCCCCCchhHHHHHHHCCCCEEEEEeccCCHHH
Confidence 99999999999999999999999999984 33222111111111 0111123458999999999999985 3 58999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 594 VRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 594 L~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
|.++|++|++.+||+||||.++...
T Consensus 1048 l~~al~eAl~~~GP~lI~v~~~c~~ 1072 (1231)
T 2c42_A 1048 FLKVLKEAESFPGPSLVIAYATCIN 1072 (1231)
T ss_dssp HHHHHHHHHHSSSCEEEEEECCCGG
T ss_pred HHHHHHHHHhcCCCEEEEEeecCcc
Confidence 9999999999999999999997653
|
| >3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-21 Score=181.63 Aligned_cols=135 Identities=17% Similarity=0.282 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCC--Cc--ccccCCCCcHHHH
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDE--LC--LRMVGMFGTVYAN 330 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hp--l~--lG~~g~~~~~~~~ 330 (643)
+...+++++++|++||||+|++|+|+. ++.+++++|+|++|+||++|++|||+||++|| ++ +|++|..++..++
T Consensus 20 ~~~~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~ 99 (170)
T 3cf4_G 20 KAVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKW 99 (170)
T ss_dssp EECCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhh
Confidence 445599999999999999999999986 67889999999999999999999999999999 99 9998888877778
Q ss_pred ---HhhhcCCEEEEecCcc--CccccCccccccCCceEEEEcCCcccccCCCCCCeeEe---cCHHHHHHHHHHHHh
Q 040733 331 ---YAVNECDLLLAAGVRF--NERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSIC---ADAKLVFNRMNMILE 399 (643)
Q Consensus 331 ---~~l~~aDlvL~vG~~~--~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~---~D~~~~L~~L~~~l~ 399 (643)
+++++||+||++|+++ +++.++.+..|.+ .++|+| ++++.+++... -..+++|+.|.+.+.
T Consensus 100 ~~~~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~~-~~iI~i-------~~~~~~~~~~~~~~l~~~~~l~~L~~~~~ 168 (170)
T 3cf4_G 100 PGLDGNGNYDMIITIGFKKFYINQVLSAAKNFSN-LKTIAI-------ERGYIQNATMSFGNLSKADHYAALDELIN 168 (170)
T ss_dssp CCSSSSCCCSEEEEESCCHHHHHHHHHHHHHHCC-CCEEEC-------SSSCCTTSSEECCCCCHHHHHHHHHHHHH
T ss_pred hHHHHhhcCCEEEEECCccCccccccccccccCC-CeEEEE-------CCCcccchhhhhccCCHHHHHHHHHHHHh
Confidence 8899999999999999 8888877666666 788844 45554443332 145777777766543
|
| >1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-20 Score=174.87 Aligned_cols=131 Identities=22% Similarity=0.307 Sum_probs=99.4
Q ss_pred HHHH-HHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCC-CC-CCcccccCCCCcHHHHHhh--
Q 040733 261 LRQT-LKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPC-TD-ELCLRMVGMFGTVYANYAV-- 333 (643)
Q Consensus 261 i~~~-~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~-~h-pl~lG~~g~~~~~~~~~~l-- 333 (643)
++++ +++|++||||+|++|+ +. ++.+++++|+|+ ++||++|++|+|.||+ +| |++.+ +|++ ...+...
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~-~G~~--~~g~~~~~~ 98 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNY-AVLH--ELTQFLLDP 98 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEE-ECHH--HHHHHHHST
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccc-cccH--HHHHHhhhh
Confidence 7888 9999999999999999 87 678899999999 9999999999999999 99 84433 2321 1234433
Q ss_pred --------hcCCEEEEecCccC--ccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCC
Q 040733 334 --------NECDLLLAAGVRFN--ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGV 403 (643)
Q Consensus 334 --------~~aDlvL~vG~~~~--~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~ 403 (643)
++|||||++|+||+ ++.++++..|.+++++|||| ++++++ ++.+|++|.
T Consensus 99 ~~~~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id-------k~~~~d------a~~~l~~L~-------- 157 (174)
T 1ytl_A 99 DWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID-------RYYHPN------ADMSFGNLW-------- 157 (174)
T ss_dssp TCCCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS-------SSCCTT------SSEECCCCG--------
T ss_pred hhhhhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC-------CCcCCC------HHHHHHHHH--------
Confidence 89999999999997 55566777777788999974 666664 344454443
Q ss_pred CCCCChhHHHHHHHHHH
Q 040733 404 GFMFDFSAWREELHEQK 420 (643)
Q Consensus 404 ~~~~~~~~w~~~~~~~~ 420 (643)
....+|.+++.+..
T Consensus 158 ---~~~~~w~~~l~~~~ 171 (174)
T 1ytl_A 158 ---KKEEDYLKLLDEIL 171 (174)
T ss_dssp ---GGHHHHHHHHHHHH
T ss_pred ---hchHHHHHHHHHHH
Confidence 12357887776654
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.7e-17 Score=171.93 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=125.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh----CCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR----SNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~----~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.|+|++++++.+.+.|++++|||||+.+.++++.|.+ .+++++.++||.+|+.||.|++++++| +++.|+|||+
T Consensus 22 ~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r--~~~~ts~~G~ 99 (395)
T 1yd7_A 22 FIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK--AMTATSGPGF 99 (395)
T ss_dssp EEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC--EEEEEETTHH
T ss_pred EeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc--EEEEeCchHH
Confidence 4799999999999999999999999999999999865 459999999999999999999999998 5557999999
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCcc-CHHHH--hh--ccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEI-PVVEV--TR--YMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~-d~~~~--~~--~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++++.+|..+...++|+++++++++....+...+++. |.... .. ++.++...+.+++++..++..||++|...+
T Consensus 100 ~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~- 178 (395)
T 1yd7_A 100 SLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYR- 178 (395)
T ss_dssp HHHTTTCC----CCCCEEEEEEC--------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHC-
Confidence 9999999999999999999999988665443343333 22222 22 457888889999999999999999999876
Q ss_pred CeEEEEcccchhh
Q 040733 220 GPVLIDIPVDVQL 232 (643)
Q Consensus 220 GPV~i~iP~Dv~~ 232 (643)
.||.+.+|.++..
T Consensus 179 ~PVi~~~~~~l~h 191 (395)
T 1yd7_A 179 TPVILLTDAEVGH 191 (395)
T ss_dssp SEEEEEECHHHHH
T ss_pred CCEEEEcchhHhC
Confidence 9999999998754
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-16 Score=166.06 Aligned_cols=120 Identities=21% Similarity=0.259 Sum_probs=99.9
Q ss_pred cCCCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC-H-HHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 480 SSGFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN-L-QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 480 ~~~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
.++.|+||+++|.|+|+++|. +++.||+++|||+|++. + .+|.+|.++++|+++||.||+ |++...
T Consensus 138 ~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~------- 209 (368)
T 1w85_A 138 LPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR-FAISTP------- 209 (368)
T ss_dssp CCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECS-EETTEE-------
T ss_pred CCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCC-ccceec-------
Confidence 346699999999999999986 48899999999999985 3 469999999999888888884 887420
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeCCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVSYQE 618 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~~~~ 618 (643)
. .. ....+||.++|++||+++++|+ +++++.+++++|++ .+||+||||.+.+..
T Consensus 210 --~-~~--------~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~ 269 (368)
T 1w85_A 210 --V-EK--------QTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 269 (368)
T ss_dssp --G-GG--------TCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSS
T ss_pred --c-cc--------ccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccC
Confidence 0 01 1235799999999999999997 78999999999886 689999999998754
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=166.13 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=90.6
Q ss_pred cccccchHHHHHH----HHhCCCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccccc
Q 040733 484 GSMGFGLPAAMGA----AVANPGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRA 557 (643)
Q Consensus 484 g~mG~glpaAiGa----alA~p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~ 557 (643)
|.+|.++|.|+|+ +++.++++||+++|||+|+++ ++| |.+|.++++|+++||.||+ |+|......
T Consensus 144 g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~~~-------- 214 (367)
T 1umd_A 144 SPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-YAISVDYRH-------- 214 (367)
T ss_dssp SSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-EETTEEHHH--------
T ss_pred chhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-eeeccChhh--------
Confidence 5555555555554 455788999999999999999 999 9999999999888888888 998531110
Q ss_pred ccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH------HHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 558 NSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV------RAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 558 ~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL------~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
. ...+||.++|++||+++++|+..+.+ +.+++++.+.+||+||||.+.+..
T Consensus 215 --~--------~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~ 271 (367)
T 1umd_A 215 --Q--------THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYG 271 (367)
T ss_dssp --H--------CSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCS
T ss_pred --c--------cCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCC
Confidence 0 13479999999999999999876665 556666666789999999998754
|
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=4.8e-16 Score=166.18 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=98.7
Q ss_pred CCcccccchHHHHHHHHhCC----CCeEEEEecCccccCCH--HHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVANP----GAIVVDIDGDGSFIMNL--QELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p----~~~Vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
+.|+||+++|.|+|+++|.+ ++.||+++|||+|+|+. ++|.+|.++++|+++||.|| +|++....
T Consensus 160 ~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN-~~~i~~~~-------- 230 (400)
T 2bfd_A 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNN-GYAISTPT-------- 230 (400)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEG--------
T ss_pred cCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECC-ceeeeecc--------
Confidence 45999999999999999976 89999999999999987 89999999999988888888 78875310
Q ss_pred ccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeCC
Q 040733 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVSY 616 (643)
Q Consensus 556 ~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~~ 616 (643)
.. ....+||.++|++||+++++|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 231 --~~--------~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 231 --SE--------QYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp --GG--------TCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred --cc--------cCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 00 0234799999999999999997 67899999988875 6899999999965
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-16 Score=177.86 Aligned_cols=138 Identities=17% Similarity=0.244 Sum_probs=96.9
Q ss_pred cCCCcccccchHHHHHHHHh----CCCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHH-----
Q 040733 480 SSGFGSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYE----- 548 (643)
Q Consensus 480 ~~~~g~mG~glpaAiGaalA----~p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q----- 548 (643)
..+.|+||+++|+|+|+++| .++++||+++|||+|+ |+.++|.||.++++|++ +|+|||+|+|....+
T Consensus 119 ~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli-~IvnnN~~~i~~~~~~~~~~ 197 (629)
T 2o1x_A 119 AITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKML-IVLNDNEMSISENVGAMNKF 197 (629)
T ss_dssp CSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEE-EEEEECSBSSSBCCSSHHHH
T ss_pred CcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEE-EEEECCCCCCCCChhHHHHH
Confidence 45679999999999999999 5899999999999999 77899999999999975 556777898753221
Q ss_pred --HHhhccccccc---------ccCCCCCC-CCCCCCHH---------HHHhHCCCCEE-EeC--ChhHHHHHHHHHHhC
Q 040733 549 --DRYFEANRANS---------FLGDPLRK-SEIFPDML---------KFAEACGIPAA-RVT--KKKDVRAAIQLMLET 604 (643)
Q Consensus 549 --~~~~~~~~~~~---------~~g~p~~~-~~~~~d~~---------~lA~a~G~~~~-~V~--~~~eL~~al~~al~~ 604 (643)
...+...+... .+|.|... .....||. +++++||++++ +|+ +.++|.++|+++.+.
T Consensus 198 ~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~ 277 (629)
T 2o1x_A 198 MRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDL 277 (629)
T ss_dssp C---------------------------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTTS
T ss_pred HHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHhc
Confidence 10011000000 01110000 00011432 89999999998 885 999999999999988
Q ss_pred CCcEEEEEEeCCCC
Q 040733 605 PGPYLLDVMVSYQE 618 (643)
Q Consensus 605 ~gp~lIeV~v~~~~ 618 (643)
++|+||||.+.+..
T Consensus 278 ~~P~lI~v~t~kg~ 291 (629)
T 2o1x_A 278 DGPTILHIVTTKGK 291 (629)
T ss_dssp SSEEEEEEECCTTT
T ss_pred CCCEEEEEEEecCC
Confidence 99999999998754
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=163.36 Aligned_cols=119 Identities=21% Similarity=0.159 Sum_probs=95.9
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhccc
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEAN 555 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 555 (643)
+.|+||+++|.|+|+++|. +++.||+++|||+|++. .++|.+|.++++|+++|| |||+|++....
T Consensus 179 ~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv-~NN~~gi~~~~-------- 249 (407)
T 1qs0_A 179 ISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNV-VNNQWAISTFQ-------- 249 (407)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEE-EECSEETTEEG--------
T ss_pred cccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEE-ECCCcceeecc--------
Confidence 4699999999999999984 58999999999999986 567999999999955555 55578875310
Q ss_pred ccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeCCCC
Q 040733 556 RANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVSYQE 618 (643)
Q Consensus 556 ~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~~~~ 618 (643)
.... ...+||.++|++||+++++|+ +++++.+++++|++ .+||+|||+.+.+..
T Consensus 250 --~~~~-------~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 309 (407)
T 1qs0_A 250 --AIAG-------GESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAG 309 (407)
T ss_dssp --GGGT-------TTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCS
T ss_pred --cccc-------CCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccC
Confidence 0100 135799999999999999997 57788888888875 689999999998765
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=170.79 Aligned_cols=119 Identities=15% Similarity=0.239 Sum_probs=104.4
Q ss_pred CcccccchHHHHHHHHhCC-----------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHH
Q 040733 483 FGSMGFGLPAAMGAAVANP-----------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p-----------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~ 549 (643)
.|+||+++|+|+|+++|.+ +++|++++|||+|+ |+.++|.+|.++++|.+|+|+|||+|+|....+
T Consensus 113 tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~- 191 (632)
T 3l84_A 113 TGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVG- 191 (632)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGG-
T ss_pred CcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccchh-
Confidence 4899999999999999986 89999999999999 788999999999999999999999998753211
Q ss_pred HhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 550 ~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
. ....|+.+++++||+++++|+ +.++|.++|+++.+.++|+||+|.+......
T Consensus 192 ---------~---------~~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~~~~P~lI~v~T~kG~G~ 246 (632)
T 3l84_A 192 ---------L---------AFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKTTIAKGA 246 (632)
T ss_dssp ---------G---------TCCCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHTCSSCEEEEEECCTTTTC
T ss_pred ---------h---------hcChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHhCCCCEEEEEeeEeeecC
Confidence 0 124799999999999999995 8999999999999999999999999876533
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-15 Score=169.35 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=100.5
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|+|+|+|+|.+ +++|++++|||+++ |+.++|.+|.++++|.+|+|+|||+|+|..
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~ 193 (663)
T 3kom_A 114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDG 193 (663)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----
T ss_pred CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCccccc
Confidence 45899999999999999976 78999999999999 678899999999999999999999998754
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC--ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT--KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~--~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~ 620 (643)
..+. ....|+.+++++||++++ +|+ +.++|.++|+++.+ .++|+||+|.+.+....
T Consensus 194 ~~~~-------------------~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~G~ 253 (663)
T 3kom_A 194 DTKG-------------------WFSDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCKTVIGFGS 253 (663)
T ss_dssp CGGG-------------------TCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEECCTTTTC
T ss_pred chhh-------------------hcchhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEeccccccc
Confidence 2210 124799999999999999 885 89999999999998 69999999999876533
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-15 Score=155.09 Aligned_cols=117 Identities=24% Similarity=0.317 Sum_probs=94.9
Q ss_pred CCCcccccchHHHHHHHHhCC----CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 481 SGFGSMGFGLPAAMGAAVANP----GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~p----~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
++.|+||+++|.|+|+++|.+ ++.||+++|||++++. ..+|.+|..+++|+++||.|| +|+|.......
T Consensus 137 ~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN-~~g~~t~~~~~---- 211 (365)
T 2ozl_A 137 GGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN-RYGMGTSVERA---- 211 (365)
T ss_dssp CCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEHHHH----
T ss_pred CCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECC-CcccCCCcccc----
Confidence 455899999999999999974 8899999999999985 457999999999988777666 68885321110
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeCCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVSYQE 618 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~~~~ 618 (643)
...+||.+ ++||+++++|+ +++++.+++++|++ .+||+|||+.+.+..
T Consensus 212 --------------~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~ 265 (365)
T 2ozl_A 212 --------------AASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 265 (365)
T ss_dssp --------------CSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSS
T ss_pred --------------cCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCC
Confidence 12357776 79999999997 78999999988874 689999999998653
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=163.50 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=92.5
Q ss_pred CCcccccchHHHHHHHHhC----CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHH--hhc
Q 040733 482 GFGSMGFGLPAAMGAAVAN----PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDR--YFE 553 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~--~~~ 553 (643)
+.|+||+++|+|+|+++|. ++++||+++|||+|+ |+.++|.||.++++|+++ |+|||+|++....+.. .+.
T Consensus 119 ~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~-vvnnN~~~i~~~~~~~~~~~~ 197 (621)
T 2o1s_A 119 SVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLV-ILNDNEMSISENVGALNNHLA 197 (621)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEE-EEEECC---------------
T ss_pred CCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEE-EEeCCCcccCCCcchHHHHHH
Confidence 4699999999999999984 789999999999999 567899999999999865 5677799998765431 110
Q ss_pred -----cccc-----cc-ccC-CCC--CCCCCCCCH-------HHHHhHCCCCEE-Ee--CChhHHHHHHHHHHhCCCcEE
Q 040733 554 -----ANRA-----NS-FLG-DPL--RKSEIFPDM-------LKFAEACGIPAA-RV--TKKKDVRAAIQLMLETPGPYL 609 (643)
Q Consensus 554 -----~~~~-----~~-~~g-~p~--~~~~~~~d~-------~~lA~a~G~~~~-~V--~~~~eL~~al~~al~~~gp~l 609 (643)
..+. .. ... .|. .......|| .+++++||++++ +| ++.++|.++++++.+.++|+|
T Consensus 198 ~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~~gP~l 277 (621)
T 2o1s_A 198 QLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQF 277 (621)
T ss_dssp -----------------------------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHSCSEEE
T ss_pred hhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 0000 00 000 000 000001244 689999999998 77 589999999999999999999
Q ss_pred EEEEeCCCCCc
Q 040733 610 LDVMVSYQEHV 620 (643)
Q Consensus 610 IeV~v~~~~~~ 620 (643)
|||.+.+....
T Consensus 278 I~v~t~kg~G~ 288 (621)
T 2o1s_A 278 LHIMTKKGRGY 288 (621)
T ss_dssp EEEECCCTTCC
T ss_pred EEEEEecccCC
Confidence 99999876533
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-15 Score=171.64 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=100.2
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|+|+|+|+|.+ +++|++|+|||+|+ |+.++|.+|.++++|.+|+|+|||+|+|..
T Consensus 153 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~ 232 (711)
T 3uk1_A 153 TTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDG 232 (711)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE
T ss_pred CccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCccccc
Confidence 35899999999999999976 78999999999999 678899999999999999999999998753
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE-e--CChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR-V--TKKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~-V--~~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
..+. ....||.+++++||+++++ | .+.++|.++|+++.+.++|+||+|.+.+...
T Consensus 233 ~~~~-------------------~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~~~~P~lI~v~T~kG~G 290 (711)
T 3uk1_A 233 DVVN-------------------WFHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCKTRIGNG 290 (711)
T ss_dssp EGGG-------------------TCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTTCSSCEEEEEEC-----
T ss_pred chhh-------------------hcCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEccccccC
Confidence 2110 1247999999999999998 6 4899999999999988999999999977654
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-15 Score=167.54 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=104.8
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|+|+|+|+|.+ +++|++++|||+++ |+.++|.+|.++++|.+|+|+|||+|+|..
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~ 217 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDG 217 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSS
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeeccc
Confidence 45899999999999999976 88999999999999 578999999999999999999999998753
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~ 620 (643)
..+ . ....|+.+++++||+++++| ++.++|.++|+++.+ .++|+||+|.+......
T Consensus 218 ~~~----------~---------~~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~T~kG~G~ 277 (690)
T 3m49_A 218 DLN----------R---------SFSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGFGS 277 (690)
T ss_dssp BGG----------G---------TCCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred chh----------h---------ccchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEEeeccccc
Confidence 221 0 13479999999999999999 789999999999998 79999999999877543
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-15 Score=168.22 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=103.3
Q ss_pred CCCcccccchHHHHHHHHhC--------------CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 481 SGFGSMGFGLPAAMGAAVAN--------------PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~--------------p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
...|+||+++|+|+|+|+|. ++++|++++|||+++ |+.++|.+|.++++|.+|+|+|||+|+|.
T Consensus 115 ~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 194 (651)
T 2e6k_A 115 VTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISID 194 (651)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETT
T ss_pred eccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCcccc
Confidence 35699999999999999985 378999999999999 67889999999999999999999999985
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC--ChhHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT--KKKDVRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~--~~~eL~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
...+ . ....|+.+++++||++++ +|+ +.++|.++++++.+.++|+||+|.+.+..
T Consensus 195 ~~~~----------~---------~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~t~kg~ 252 (651)
T 2e6k_A 195 GPTD----------L---------AFTEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKLDERPTLIAVRSHIGF 252 (651)
T ss_dssp EEGG----------G---------TCCSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHHSSSCEEEEEECCTTT
T ss_pred cccc----------c---------ccCccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEEEeEecc
Confidence 3110 0 124799999999999999 887 89999999999998899999999998754
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.9e-15 Score=165.94 Aligned_cols=118 Identities=20% Similarity=0.147 Sum_probs=100.1
Q ss_pred CCcccccchHHHHHHHHhCC-----CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcc
Q 040733 482 GFGSMGFGLPAAMGAAVANP-----GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEA 554 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p-----~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 554 (643)
+.|+||+++|+|+|+++|.+ +++||+++|||+|+ |++++|.+|.++++|.+++|+||++|++...
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~-------- 190 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDP-------- 190 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSB--------
T ss_pred cccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCC--------
Confidence 45899999999999999965 68999999999999 7899999999999999999999999987310
Q ss_pred cccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHhCCCcEEEEEEeCCCCC
Q 040733 555 NRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 555 ~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~~~gp~lIeV~v~~~~~ 619 (643)
. .. .....||.+++++||+++++|+ +.++|.++|+++ .++|+||||.+.+...
T Consensus 191 -~-~~--------~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~--~~~P~lI~v~T~kg~G 245 (616)
T 3mos_A 191 -A-PL--------QHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA--KHQPTAIIAKTFKGRG 245 (616)
T ss_dssp -C-TT--------TTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC--CSSCEEEEEECCTTTT
T ss_pred -c-cc--------ccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc--CCCCEEEEEEEecccc
Confidence 0 00 0123589999999999999994 889999999765 6899999999987654
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.9e-15 Score=167.27 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=104.4
Q ss_pred CCCcccccchHHHHHHHHhCC--------------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhh
Q 040733 481 SGFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMN 544 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~ 544 (643)
.+.|+||+++|+|+|+|+|.+ +++|++++|||+|+ |+.++|.+|.++++|.+|+|+|||+|+|.
T Consensus 111 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 190 (669)
T 2r8o_A 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISID 190 (669)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred cccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEec
Confidence 356999999999999999965 78999999999999 67888999999999999999999999975
Q ss_pred HHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC--ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 040733 545 VEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT--KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 545 ~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~--~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~ 620 (643)
... .. ....|+.+++++||++++ +|+ +.++|.++++++.+ .++|+||+|.+.+....
T Consensus 191 ~~~----------~~---------~~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~ 251 (669)
T 2r8o_A 191 GHV----------EG---------WFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGFGS 251 (669)
T ss_dssp EEG----------GG---------TCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred ccc----------cc---------ccCccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEEEEeEeccCc
Confidence 310 00 124699999999999999 887 99999999999997 68999999999887644
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-14 Score=165.57 Aligned_cols=120 Identities=21% Similarity=0.212 Sum_probs=104.1
Q ss_pred CCcccccchHHHHHHHHhC--------------CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVAN--------------PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~--------------p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|+|+|+|+|. ++++|+|++|||+++ |+.++|.+|.+++++.+|+|+|||+|+|..
T Consensus 125 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~ 204 (675)
T 1itz_A 125 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDG 204 (675)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE
T ss_pred CCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCC
Confidence 4589999999999999996 688999999999999 789999999999999999999999998742
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC---ChhHHHHHHHHHHh-CCCcEEEEEEeCCCCCc
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT---KKKDVRAAIQLMLE-TPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~---~~~eL~~al~~al~-~~gp~lIeV~v~~~~~~ 620 (643)
.. .. ....|+.+++++||++++ +|+ +.++|.++++++.+ .++|+||+|.+.+....
T Consensus 205 ~~----------~~---------~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~~~T~kg~G~ 265 (675)
T 1itz_A 205 DT----------EI---------AFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGFGS 265 (675)
T ss_dssp EG----------GG---------TCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred Ch----------hh---------hcChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEEEeeecccCc
Confidence 10 00 124799999999999999 887 89999999999997 68999999999886543
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.9e-15 Score=166.97 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=102.7
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|.|+|+++|.+ +++|++++|||+++ |+.++|.+|.++++|.+|+|+|||+|+|..
T Consensus 114 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~ 193 (680)
T 1gpu_A 114 TTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDG 193 (680)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE
T ss_pred ccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEec
Confidence 45899999999999999954 78999999999999 778999999999999999999999999753
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC---ChhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT---KKKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~---~~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
.. .. ....|+.+++++||++++ +|+ +.++|.++++++.+ .++|+||+|.+.+..
T Consensus 194 ~~----------~~---------~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~lI~~~T~kg~ 252 (680)
T 1gpu_A 194 AT----------SI---------SFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGY 252 (680)
T ss_dssp EG----------GG---------TCCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEEECCTTT
T ss_pred cc----------cc---------ccCccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHCCCCCEEEEEEeeccc
Confidence 10 00 124799999999999999 888 99999999999997 689999999998754
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-13 Score=158.01 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=101.3
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhH
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNV 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 545 (643)
..|+||+++|.|+|+|+|.+ +++|+|++|||++++. ..+|.+|.++++|.+|+|+|||+|++..
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~ 193 (673)
T 1r9j_A 114 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDG 193 (673)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSS
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCcccc
Confidence 45899999999999999853 7899999999999964 7779999999999999999999998752
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-Ee---CChhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RV---TKKKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V---~~~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
..+ . ....|+.+.+++||++++ +| ++.+++.++++++.+ .++|+||+|.+.+..
T Consensus 194 ~~~----------~---------~~~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI~~~T~kg~ 252 (673)
T 1r9j_A 194 STS----------L---------SFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIGF 252 (673)
T ss_dssp BGG----------G---------TCCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred chh----------h---------ccCHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEEEEeccccc
Confidence 110 0 124789999999999999 88 789999999999987 789999999997754
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.6e-11 Score=134.27 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=97.6
Q ss_pred CCcccccchHHHHHHHHhCC-----------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCch
Q 040733 482 GFGSMGFGLPAAMGAAVANP-----------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLG 542 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p-----------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g 542 (643)
..|++|.++|.|+|+|+|.+ ++.|+|++|||+++.. ...+.+|.++++|-+|+|+|||+|+
T Consensus 131 ~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~s 210 (700)
T 3rim_A 131 TTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQIS 210 (700)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE
T ss_pred cccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcc
Confidence 34889999999999998742 5789999999999964 5569999999999788888888887
Q ss_pred hhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 543 ~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
+-.. .. . ....|+.+.+++||+++++| .+.+++.++++++.+ .++|+||++.+....
T Consensus 211 i~~~---------~~-~---------~~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~~~~~P~lI~~~T~kG~ 271 (700)
T 3rim_A 211 IEDD---------TN-I---------ALCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQAVTDRPSFIALRTVIGY 271 (700)
T ss_dssp TTEE---------GG-G---------TCCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred cccc---------hh-h---------ccchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHHcCCCCEEEEEEEEeee
Confidence 6311 00 0 12468999999999999999 489999999999997 789999999997654
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7.3e-11 Score=136.68 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=96.3
Q ss_pred CCCcccccchHHHHHHHHhCC--------------CCeEEEEecCccc--cCCHHH-HHHHHHhCCC---eEEEEEeCCC
Q 040733 481 SGFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSF--IMNLQE-LAAIKAENIP---VKILLINNQY 540 (643)
Q Consensus 481 ~~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf--~m~~~e-L~Ta~~~~lp---v~ivV~NN~~ 540 (643)
.+-+.||.++|.|+|+++|.+ +..||++.|||+| ++.++| |.+|..+++| +++||.|| +
T Consensus 242 ~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN-~ 320 (868)
T 2yic_A 242 ANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-Q 320 (868)
T ss_dssp CCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEEC-S
T ss_pred CCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcC-C
Confidence 345789999999999999842 3579999999998 578999 9999999998 99999988 7
Q ss_pred chhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEe
Q 040733 541 LGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMV 614 (643)
Q Consensus 541 ~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v 614 (643)
|||....+.. ...+++.++|++||+++++|+ +++++..++++|++ .++|+|||+.+
T Consensus 321 ~g~st~~~~~------------------~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~t 382 (868)
T 2yic_A 321 IGFTTAPTDS------------------RSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLC 382 (868)
T ss_dssp CBTTBCHHHH------------------CSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred cccccCcccc------------------ccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 8876432211 012456788999999999996 68999999988874 58999999999
Q ss_pred CCCC
Q 040733 615 SYQE 618 (643)
Q Consensus 615 ~~~~ 618 (643)
.+..
T Consensus 383 yR~~ 386 (868)
T 2yic_A 383 YRRR 386 (868)
T ss_dssp CCCS
T ss_pred ecCC
Confidence 7653
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.6e-10 Score=131.93 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=94.5
Q ss_pred CCcccccchHHHHHHHHhCC--------------CCeEEEEecCccc--cCCHHH-HHHHHHhCCC---eEEEEEeCCCc
Q 040733 482 GFGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSF--IMNLQE-LAAIKAENIP---VKILLINNQYL 541 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf--~m~~~e-L~Ta~~~~lp---v~ivV~NN~~~ 541 (643)
+-+.||.++|.|+|+++|.+ +..++++.|||+| +..+.| |.+|..+++| +++||.|| +|
T Consensus 488 n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN-~~ 566 (1113)
T 2xt6_A 488 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-QI 566 (1113)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEEC-SC
T ss_pred CCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeC-Cc
Confidence 35789999999999998842 3679999999998 677898 9999999998 88888888 67
Q ss_pred hhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeC
Q 040733 542 GMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVS 615 (643)
Q Consensus 542 g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~ 615 (643)
||....... + ...++.++|++||+++++|+ +++++..++++|++ .++|+|||+.+.
T Consensus 567 gist~~~~~-----~-------------s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~ty 628 (1113)
T 2xt6_A 567 GFTTAPTDS-----R-------------SSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCY 628 (1113)
T ss_dssp BTTBCHHHH-----C-------------SSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred ccccCcccc-----c-------------cccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeE
Confidence 875421100 0 12345678999999999997 89999999888875 589999999997
Q ss_pred CCC
Q 040733 616 YQE 618 (643)
Q Consensus 616 ~~~ 618 (643)
+..
T Consensus 629 R~~ 631 (1113)
T 2xt6_A 629 RRR 631 (1113)
T ss_dssp CCS
T ss_pred ccC
Confidence 653
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=4e-09 Score=122.93 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=86.9
Q ss_pred CCcccccchHHHHHHHHhCCC---------CeEEEEecCccc--cCCHHH-HHHHHHhCCC---eEEEEEeCCCchhhH-
Q 040733 482 GFGSMGFGLPAAMGAAVANPG---------AIVVDIDGDGSF--IMNLQE-LAAIKAENIP---VKILLINNQYLGMNV- 545 (643)
Q Consensus 482 ~~g~mG~glpaAiGaalA~p~---------~~Vv~i~GDGsf--~m~~~e-L~Ta~~~~lp---v~ivV~NN~~~g~~~- 545 (643)
+-+.+|.++|.|+|+++|.+. ..||+++|||+| +..+.| |.+|..+++| +++||.||+ |++..
T Consensus 319 ~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~-~~ist~ 397 (933)
T 2jgd_A 319 NPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ-VGFTTS 397 (933)
T ss_dssp CCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-------
T ss_pred cCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC-ccccCC
Confidence 346788999999999998543 379999999998 667888 9999999999 888888776 77754
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHHh----CCCcEEEEEEeCCC
Q 040733 546 EYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLMLE----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 546 ~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al~----~~gp~lIeV~v~~~ 617 (643)
..+.. ....++.+++++||+++++|+ +++++..++++|.+ .++|+|||+.+.+.
T Consensus 398 ~~~~~------------------~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~ 457 (933)
T 2jgd_A 398 NPLDA------------------RSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRR 457 (933)
T ss_dssp ---------------------------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_pred CHHhc------------------ccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeee
Confidence 22210 123567888999999999985 47788888888774 58999999998664
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=118.32 Aligned_cols=121 Identities=18% Similarity=0.159 Sum_probs=95.5
Q ss_pred CcccccchHHHHHHHHhC-----------CCCeEEEEecCcccc--CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHH
Q 040733 483 FGSMGFGLPAAMGAAVAN-----------PGAIVVDIDGDGSFI--MNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~-----------p~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~ 549 (643)
.|+||.|++.|+|++++. .+++|++|+|||++. ++...|..|.+++++-+|+|+|||++.+-
T Consensus 191 tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~----- 265 (886)
T 2qtc_A 191 TVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLD----- 265 (886)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSS-----
T ss_pred ccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccC-----
Confidence 489999999999999873 478999999999999 56788999999999878888888887641
Q ss_pred HhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC----------------------------------------
Q 040733 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT---------------------------------------- 589 (643)
Q Consensus 550 ~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~---------------------------------------- 589 (643)
.+.... .....++.++.+++|.+.++|.
T Consensus 266 ----~~v~~~--------~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~ 333 (886)
T 2qtc_A 266 ----GPVTGN--------GKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV 333 (886)
T ss_dssp ----SBSCTT--------SCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHH
T ss_pred ----CCcccc--------ccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHH
Confidence 111100 0012478899999999999884
Q ss_pred -------------------------------ChhHHHHHHHHHHhC-CCcEEEEEEeCCCCCc
Q 040733 590 -------------------------------KKKDVRAAIQLMLET-PGPYLLDVMVSYQEHV 620 (643)
Q Consensus 590 -------------------------------~~~eL~~al~~al~~-~gp~lIeV~v~~~~~~ 620 (643)
+.+++.++++++.+. ++|+||++++...-..
T Consensus 334 r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~~~~PtlI~~~T~KG~G~ 396 (886)
T 2qtc_A 334 REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGM 396 (886)
T ss_dssp HHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred HHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHcCCCCEEEEEeeeecccc
Confidence 678889999998874 6999999999776533
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=96.84 Aligned_cols=153 Identities=10% Similarity=0.068 Sum_probs=115.5
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh---C------C--CeEEecCChhHHHHHHHHHHHHhCCcEEEE
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR---S------N--IRSILPRHEQGGIFAAEGYARSSGTPGVCL 137 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~---~------~--i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~ 137 (643)
.|+|.+++++.. ..|++.+++||++.+.++.+.+.+ . | ..++..-+|.+|+.||.|.+.+..|+. .
T Consensus 6 ~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~--t 82 (1231)
T 2c42_A 6 TTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTT--T 82 (1231)
T ss_dssp EEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEE--E
T ss_pred EccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChHh--h
Confidence 478999999997 779999999999999999999852 1 2 389999999999999999997766644 3
Q ss_pred EccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHH-hhccceeee-EeCCcCcHHHHHHHHHHHhh
Q 040733 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEV-TRYMTKHNY-LVLDVDDIPRIIKEAFFIAT 215 (643)
Q Consensus 138 ~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~-~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~ 215 (643)
.|+|||+.-+...|..+....+|+|+...+++..-.+...+- +|-++ +.-.+.|-. ...++++.-.++..||.+|.
T Consensus 83 ~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~--~hsd~~~ar~~G~~vl~pss~QEa~dl~~~Af~lAe 160 (1231)
T 2c42_A 83 FTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALSIFG--DHQDIYAARQTGFAMLASSSVQEAHDMALVAHLAAI 160 (1231)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSC--CSHHHHTTTTSSCEEEECCSHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCCcCCC--chhhHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHH
Confidence 589999999999997766678999999998875422211111 22222 222333433 35678899999999999998
Q ss_pred cCCCCeEEEEcc
Q 040733 216 SGRPGPVLIDIP 227 (643)
Q Consensus 216 s~~~GPV~i~iP 227 (643)
..+ -||.+...
T Consensus 161 k~~-~PVi~~~D 171 (1231)
T 2c42_A 161 ESN-VPFMHFFD 171 (1231)
T ss_dssp HHC-CCEEEEEE
T ss_pred HcC-CCEEEEec
Confidence 654 68876553
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00015 Score=83.10 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=80.9
Q ss_pred cccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHH----HHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccc
Q 040733 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAA----IKAENIPVKILLINNQYLGMNVEYEDRYFEANRAN 558 (643)
Q Consensus 484 g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~T----a~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~ 558 (643)
|.+|+|++.|+|+++.+|+.+|+|++|||...=. +...|- +..+++.-+++|+++|++.+-. .
T Consensus 175 G~LGqGls~AvG~A~~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i~g---------~--- 242 (845)
T 3ahc_A 175 GELGYALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIAN---------P--- 242 (845)
T ss_dssp SSTTCHHHHHHHHHTTCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSSSS---------B---
T ss_pred CCccchHhHHhhhhhcCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcCCC---------C---
Confidence 8999999999999999999999999999993321 111121 2245677777888888776521 0
Q ss_pred cccCCCCCCCCCCCCHHHHHhHCCCCEE-EeC-----ChhHHHHHHHHHH---------------h--CCCc--EEEEEE
Q 040733 559 SFLGDPLRKSEIFPDMLKFAEACGIPAA-RVT-----KKKDVRAAIQLML---------------E--TPGP--YLLDVM 613 (643)
Q Consensus 559 ~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V~-----~~~eL~~al~~al---------------~--~~gp--~lIeV~ 613 (643)
+.+. ....-|+.+..++||.+.+ .|+ +++++..++++++ + .++| .+|-+.
T Consensus 243 t~l~-----~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~r 317 (845)
T 3ahc_A 243 TILA-----RISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFR 317 (845)
T ss_dssp CHHH-----HSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEE
T ss_pred cccc-----ccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEE
Confidence 0000 0112378899999999988 664 5667776654333 2 3689 999999
Q ss_pred eCCCC
Q 040733 614 VSYQE 618 (643)
Q Consensus 614 v~~~~ 618 (643)
+...-
T Consensus 318 T~kG~ 322 (845)
T 3ahc_A 318 TPKGW 322 (845)
T ss_dssp CCTTT
T ss_pred CcccC
Confidence 87765
|
| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.066 Score=55.10 Aligned_cols=116 Identities=17% Similarity=0.073 Sum_probs=76.7
Q ss_pred CeEEec-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH--hh---h----CCCCEEEEeCCCcccccCCCC
Q 040733 108 IRSILP-RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD--AY---S----DSIPILAITGQVSQKLLGTDA 177 (643)
Q Consensus 108 i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~--A~---~----~~vPvlvItg~~~~~~~g~~~ 177 (643)
-|++.+ ..|++++.+|.|+|.. |...++-.|.++.+.-++..|.+ |+ . .++|++++.. ......+...
T Consensus 51 ~r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~ 128 (324)
T 1umd_B 51 DRVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH 128 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc
Confidence 356644 9999999999999987 54344434788888777777754 22 1 7899998763 1111111111
Q ss_pred CCccCHHHHhhccceee-eEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchh
Q 040733 178 FQEIPVVEVTRYMTKHN-YLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 178 ~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~ 231 (643)
+|..| ..+++.+..+. +...++.+...++++|++ .++||+|.-|..+.
T Consensus 129 hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~ 177 (324)
T 1umd_B 129 HSQSP-EAHFVHTAGLKVVAVSTPYDAKGLLKAAIR-----DEDPVVFLEPKRLY 177 (324)
T ss_dssp SSCCC-HHHHHTSTTCEEEECCSHHHHHHHHHHHHH-----CSSCEEEEEEGGGS
T ss_pred cchhH-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh-----cCCCEEEEechHhc
Confidence 22223 47888887644 346678888888888885 34899998887664
|
| >2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... | Back alignment and structure |
|---|
Probab=95.30 E-value=0.039 Score=57.32 Aligned_cols=154 Identities=8% Similarity=-0.026 Sum_probs=94.5
Q ss_pred CCcHHHHHHHHHHHCC--CCEEEEccCCC--------cHHHHHHHhhCCCeEEecC-ChhHHHHHHHHHHHHhCCcEEEE
Q 040733 69 PRKGADIIVEALERQG--VTTVFAYPGGA--------SIEIHQSLTRSNIRSILPR-HEQGGIFAAEGYARSSGTPGVCL 137 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~G--V~~vFg~PG~~--------~~~l~~al~~~~i~~i~~~-hE~~A~~~A~Gyar~sg~~gv~~ 137 (643)
+++..+++.++|.++. -..|+++..+- ...|.+.+- +-|++.+- .|++++.+|.|+|...-| .++-
T Consensus 20 ~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~g--p~r~~~~gIaE~~~v~~a~G~A~~G~r-p~~~ 96 (342)
T 2bfd_B 20 KMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYG--KDRVFNTPLCEQGIVGFGIGIAVTGAT-AIAE 96 (342)
T ss_dssp EECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHC--TTTEEECCSCHHHHHHHHHHHHHTTCC-EEEE
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhC--CCeEEEcCcCHHHHHHHHHHHHHCCCe-eEEE
Confidence 3456666666555443 13344443221 123333220 24777765 999999999999987444 4443
Q ss_pred EccchhhHHHHHHHH-Hhh----h----CCC-CEEEEeCCCcccccCCCCCCccCHHHHhhccceeee-EeCCcCcHHHH
Q 040733 138 VSSGPGVTNIMTGLM-DAY----S----DSI-PILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRI 206 (643)
Q Consensus 138 ~t~GpG~~N~~~gl~-~A~----~----~~v-PvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~ 206 (643)
.|.++++.-+...+. ++. . -++ ||+++... .... +-..+|......+++.+..+.. ...++.+...+
T Consensus 97 ~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~-~g~~-~G~th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~ 174 (342)
T 2bfd_B 97 IQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPW-GCVG-HGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGL 174 (342)
T ss_dssp CSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEE-SCCS-SCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEec-CCCC-CCcchhhHhHHHHHhcCCCcEEEeeCCHHHHHHH
Confidence 588999887777775 232 1 134 99988532 2111 2234666666778888765433 45677788888
Q ss_pred HHHHHHHhhcCCCCeEEEEcccchhh
Q 040733 207 IKEAFFIATSGRPGPVLIDIPVDVQL 232 (643)
Q Consensus 207 l~~A~~~A~s~~~GPV~i~iP~Dv~~ 232 (643)
++.|++. ++||+|..|..+..
T Consensus 175 l~~a~~~-----~~Pv~i~~p~~l~r 195 (342)
T 2bfd_B 175 LLSCIED-----KNPCIFFEPKILYR 195 (342)
T ss_dssp HHHHHHS-----SSCEEEEEEGGGTT
T ss_pred HHHHHhc-----CCcEEEEecchhcC
Confidence 8888762 48999988876543
|
| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B | Back alignment and structure |
|---|
Probab=95.15 E-value=0.1 Score=54.03 Aligned_cols=117 Identities=10% Similarity=-0.036 Sum_probs=79.6
Q ss_pred CeEEec-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH-hh----h----CCCCEEEEeCCCcccccCCCC
Q 040733 108 IRSILP-RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD-AY----S----DSIPILAITGQVSQKLLGTDA 177 (643)
Q Consensus 108 i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~-A~----~----~~vPvlvItg~~~~~~~g~~~ 177 (643)
-+++.+ -.|++++.+|.|+|.. |.-.++-.|.++++.-++..|.. +. . .+.||+++..... .. +-..
T Consensus 52 ~r~~~~gisE~~~~~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~-~G~t 128 (338)
T 1qs0_B 52 SRVFDAPISESGIVGTAVGMGAY-GLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GI-YGGQ 128 (338)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SS-SCCS
T ss_pred CcEEEccccHHHHHHHHHHHHhC-CCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CC-CCcc
Confidence 478875 7999999999999987 54333334788888777777753 32 1 3589998762111 11 1234
Q ss_pred CCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchhh
Q 040733 178 FQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL 232 (643)
Q Consensus 178 ~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~~ 232 (643)
+|......+++.+..+.. ...++.++..+++.|++. ++||+|..|..+..
T Consensus 129 h~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~-----~~Pv~i~~p~~l~r 179 (338)
T 1qs0_B 129 THSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIEC-----DDPVIFLEPKRLYN 179 (338)
T ss_dssp SSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEEEEEGGGSS
T ss_pred cccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc-----CCcEEEEEchHhhc
Confidence 566666788888765444 356777888888888762 48999988865543
|
| >1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.1 Score=53.69 Aligned_cols=116 Identities=14% Similarity=0.015 Sum_probs=76.9
Q ss_pred CeEEec-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH-hhh--------CCCCEEEEeCCCcccccCCCC
Q 040733 108 IRSILP-RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD-AYS--------DSIPILAITGQVSQKLLGTDA 177 (643)
Q Consensus 108 i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~-A~~--------~~vPvlvItg~~~~~~~g~~~ 177 (643)
-+++.+ ..|++++.+|.|+|.. |.-.++-.|.++.+.-++..|.+ +.. .++||+++.. +.....+...
T Consensus 50 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~ 127 (324)
T 1w85_B 50 DRVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPEL 127 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTT
T ss_pred CcEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCc
Confidence 467764 5999999999999976 54334434788888777777753 222 7999998842 1111111111
Q ss_pred CCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchh
Q 040733 178 FQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 178 ~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~ 231 (643)
+|. .+..+++.+..+.. ...++.+...+++.|++ .++||+|.-|..+.
T Consensus 128 hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~ 176 (324)
T 1w85_B 128 HSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISAIR-----DNDPVIFLEHLKLY 176 (324)
T ss_dssp SSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEEEETTTS
T ss_pred ccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHHHH-----cCCCEEEEechHhc
Confidence 232 33488888876444 45677888888888885 34899998887664
|
| >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.033 Score=54.60 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=50.9
Q ss_pred HHHHhhhcCCEEEEecCccCccccCcccccc--CCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLEDFA--TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~~--~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
.+.+.++++|++|++|+++.-+....+.... .++++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 160 ~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~--~~~~~i~~~~~~~l~~l~~~l~ 231 (235)
T 1s5p_A 160 EIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN--EFAEKYYGPASQVVPEFVEKLL 231 (235)
T ss_dssp HHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC-----CCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCc--cccEEEeCCHHHHHHHHHHHHH
Confidence 4556788999999999998644333332222 36789999999876654 5789999999999999986653
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.25 Score=55.41 Aligned_cols=155 Identities=15% Similarity=0.051 Sum_probs=97.5
Q ss_pred CCCcHHHHHHHHHHHCC--CCEEEEccCC-CcHHHHHHHhhC-CCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccch
Q 040733 68 KPRKGADIIVEALERQG--VTTVFAYPGG-ASIEIHQSLTRS-NIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGP 142 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~G--V~~vFg~PG~-~~~~l~~al~~~-~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~Gp 142 (643)
.++...+++-++|.++. -..|+++-.+ ....+.+.|.+. +=|++ ....|++++.+|.|.|....+ -++..|+++
T Consensus 311 ~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~-~~~~~~f~~ 389 (616)
T 3mos_A 311 DKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRT-VPFCSTFAA 389 (616)
T ss_dssp CBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCC-EEEEEEEGG
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCC-CEEEEehHH
Confidence 34455555555554433 2345544333 222233444432 23566 456999999999999987654 344567899
Q ss_pred hhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 143 GVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 143 G~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
.+.-++..|..+...+.|++++.. ...-..|.+ .+|.+.+..+++.+..... ...++.++..+++.|+ .. +
T Consensus 390 Fl~~a~dqi~~~a~~~~~v~~v~~-~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~----~~-~ 463 (616)
T 3mos_A 390 FFTRAFDQIRMAAISESNINLCGS-HCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAA----NT-K 463 (616)
T ss_dssp GGGGGHHHHHHHHHTTCCEEEEEE-SBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHH----TC-C
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEE-CCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHH----hc-C
Confidence 999999999988889999887643 322213432 4677788899999875433 2345555555555544 32 5
Q ss_pred CeEEEEcccc
Q 040733 220 GPVLIDIPVD 229 (643)
Q Consensus 220 GPV~i~iP~D 229 (643)
||++|..|.+
T Consensus 464 gp~~ir~~r~ 473 (616)
T 3mos_A 464 GICFIRTSRP 473 (616)
T ss_dssp SEEEEECCSS
T ss_pred CCEEEEEeCC
Confidence 9999999874
|
| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B | Back alignment and structure |
|---|
Probab=94.57 E-value=0.094 Score=54.33 Aligned_cols=112 Identities=16% Similarity=0.076 Sum_probs=79.4
Q ss_pred CeEEec-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhh---------CCCCEEEEeCCCcccccC-CC
Q 040733 108 IRSILP-RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYS---------DSIPILAITGQVSQKLLG-TD 176 (643)
Q Consensus 108 i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~---------~~vPvlvItg~~~~~~~g-~~ 176 (643)
-|++.+ ..|++++.+|.|+|.. |...++-.|.+..+.-++..|..+.. .+.||+++... . ..| .+
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G--~~g~~G 137 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G--ASAGVA 137 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S--CCSSCC
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c--CCCCCC
Confidence 578877 6999999999999977 54344444788888777788775443 89998887652 2 222 11
Q ss_pred -CC-CccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccch
Q 040733 177 -AF-QEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV 230 (643)
Q Consensus 177 -~~-Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv 230 (643)
.+ |.++ .+++.+..+... ..++.++..+++.|++. ++||+|..|..+
T Consensus 138 ~tHs~~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~-----~~Pv~i~~~~~~ 187 (341)
T 2ozl_B 138 AQHSQCFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIRD-----NNPVVVLENELM 187 (341)
T ss_dssp GGGCCCCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHHS-----SSCEEEEECHHH
T ss_pred cchhhHHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHhc-----CCCEEEEEChhh
Confidence 23 4444 788888765543 56777888888888763 499999999764
|
| >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.099 Score=52.53 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=49.7
Q ss_pred HHhhhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCccc-cc-CCCCCCeeEecCHHHHHHHHHHHH
Q 040733 330 NYAVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNE-IG-KVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 330 ~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~-i~-~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
...+.+||++|++|+++.-+.-..+.. ...++.+|.|+.++.. .. .....|+.+.+|+.+.+..|.+.|
T Consensus 192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~l 263 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELL 263 (285)
T ss_dssp HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHh
Confidence 456789999999999986544433332 3345678889888753 11 234678999999999999998765
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.34 Score=54.65 Aligned_cols=114 Identities=14% Similarity=0.032 Sum_probs=78.5
Q ss_pred CeEEe-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccCH
Q 040733 108 IRSIL-PRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIPV 183 (643)
Q Consensus 108 i~~i~-~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d~ 183 (643)
=|++. ..-|++++.+|.|.|...|...++ .|..+-..-+...+..+...+.||+++. .+.-. .|. ..+|.+.+
T Consensus 403 ~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g--~G~dG~THq~~ed 479 (663)
T 3kom_A 403 ANYLSYGVREFGMAAIMNGLSLYGGIKPYG-GTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIG--LGEDGPTHQPIEH 479 (663)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGG--GCTTCTTTCCSSH
T ss_pred CCeEecCccHHHHHHHHHHHHHcCCCEEEE-EehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc--cCCCCCCcCCHHH
Confidence 36665 489999999999999875644443 3477777777788888888999999984 33222 232 24788888
Q ss_pred HHHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 184 VEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 184 ~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
..+++.+..... ...++.++..+++.|+ ...++||+|.+|.
T Consensus 480 ~a~lr~iPnl~V~~Pad~~e~~~~l~~A~----~~~~~Pv~ir~~r 521 (663)
T 3kom_A 480 VPSLRLIPNLSVWRPADTIETMIAWKEAV----KSKDTPSVMVLTR 521 (663)
T ss_dssp HHHHHTSTTCEEECCCSHHHHHHHHHHHH----HCSSCCEEEECCS
T ss_pred HHHHhcCCCcEEEeeCCHHHHHHHHHHHH----HhCCCCEEEEccC
Confidence 999998875322 2344445555555544 4346999999875
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.33 Score=54.60 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=98.8
Q ss_pred CCcHHHHHHHHHHHCCC--CEEEEc----cCC-CcHHHHHHHhhCCCeEEe-cCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 040733 69 PRKGADIIVEALERQGV--TTVFAY----PGG-ASIEIHQSLTRSNIRSIL-PRHEQGGIFAAEGYARSSGTPGVCLVSS 140 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV--~~vFg~----PG~-~~~~l~~al~~~~i~~i~-~~hE~~A~~~A~Gyar~sg~~gv~~~t~ 140 (643)
.++..+++.+.|.+..- +.|+.+ +++ ....|.+.+ +=|++. ...|++++.+|.|.|...-||-+. ++
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~---~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~--~~ 395 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVH---PHRYLDVGIAEEVAVTTAAGMALQGMRPVVA--IY 395 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---GGGEEECCSCHHHHHHHHHHHHHTTCEEEEE--EE
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhc---CcceEeccccHHHHHHHHHHHHHcCCEEEEE--ec
Confidence 45677777766655432 345654 443 344454433 236776 569999999999999874444443 37
Q ss_pred chhhHHHHHH-HHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhc
Q 040733 141 GPGVTNIMTG-LMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 141 GpG~~N~~~g-l~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s 216 (643)
.+.+.-++-. +..+...+.||+++...... .|. ..+|...+..+++.+..+.. ...++.++..++..|++.
T Consensus 396 ~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~--- 470 (629)
T 2o1x_A 396 STFLQRAYDQVLHDVAIEHLNVTFCIDRAGI--VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH--- 470 (629)
T ss_dssp HHHHGGGHHHHHHTTTTTTCCCEEEEESBBC--CCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEECCcc--CCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC---
Confidence 7776655544 45577889999988733222 232 24677777889998876544 356777888888888874
Q ss_pred CCCCeEEEEcccc
Q 040733 217 GRPGPVLIDIPVD 229 (643)
Q Consensus 217 ~~~GPV~i~iP~D 229 (643)
++||+|..|..
T Consensus 471 --~~Pv~i~~~r~ 481 (629)
T 2o1x_A 471 --DGPFAIRYPRG 481 (629)
T ss_dssp --SSCEEEECCSS
T ss_pred --CCCEEEEecCC
Confidence 49999999864
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.26 Score=55.85 Aligned_cols=157 Identities=13% Similarity=0.011 Sum_probs=99.0
Q ss_pred CCCCcHHHHHHHHHHHCCCC--EEEEccCCCcHH-H-----HHHHhhC-CCeEEe-cCChhHHHHHHHHHHHHhCCcEEE
Q 040733 67 DKPRKGADIIVEALERQGVT--TVFAYPGGASIE-I-----HQSLTRS-NIRSIL-PRHEQGGIFAAEGYARSSGTPGVC 136 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~--~vFg~PG~~~~~-l-----~~al~~~-~i~~i~-~~hE~~A~~~A~Gyar~sg~~gv~ 136 (643)
..++...+++.+.|.+..-. .+++.-.+-... . ...+.+. +=|++. ...|++++.+|.|+|...|...++
T Consensus 352 ~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG~~P~~ 431 (669)
T 2r8o_A 352 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYT 431 (669)
T ss_dssp CCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSSCEEEE
T ss_pred CccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCCCeEEE
Confidence 34556677777777765533 344443221000 0 0112222 246665 569999999999999885644444
Q ss_pred EEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhcccee-eeEeCCcCcHHHHHHHHHHH
Q 040733 137 LVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKH-NYLVLDVDDIPRIIKEAFFI 213 (643)
Q Consensus 137 ~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~ 213 (643)
.|+.+-..-+..+|..+...+.||+++....... .|. ..+|.+.+..+++.+... .+...++.++..+++.|++.
T Consensus 432 -~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~-~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~a~~~ 509 (669)
T 2r8o_A 432 -STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVER 509 (669)
T ss_dssp -EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHC
T ss_pred -eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcC-cCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHh
Confidence 5778877777888888889999999886322211 232 246888888999987643 33345556666666666653
Q ss_pred hhcCCCCeEEEEcccc
Q 040733 214 ATSGRPGPVLIDIPVD 229 (643)
Q Consensus 214 A~s~~~GPV~i~iP~D 229 (643)
..+||+|.+|..
T Consensus 510 ----~~~Pv~i~~~r~ 521 (669)
T 2r8o_A 510 ----QDGPTALILSRQ 521 (669)
T ss_dssp ----SSSCEEEECCSS
T ss_pred ----CCCcEEEEeCCC
Confidence 359999999864
|
| >1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.077 Score=54.46 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=48.6
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCcccccCC------------------CCCCeeEecCHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNEIGKV------------------KLPDVSICADAKL 389 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~i~~~------------------~~~~~~i~~D~~~ 389 (643)
+...+.++|++|++|+++.-+...++.. ...+..+|.|+.++...... ...++.|.+|+.+
T Consensus 214 a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~ 293 (323)
T 1j8f_A 214 MQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQ 293 (323)
T ss_dssp HHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHH
T ss_pred HHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHH
Confidence 4567889999999999986443323322 22345567788877654332 2368889999999
Q ss_pred HHHHHHHHH
Q 040733 390 VFNRMNMIL 398 (643)
Q Consensus 390 ~L~~L~~~l 398 (643)
+|..|.+.|
T Consensus 294 ~l~~L~~~l 302 (323)
T 1j8f_A 294 GCLALAELL 302 (323)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999998654
|
| >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.075 Score=53.74 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=47.2
Q ss_pred hhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCccc-cc-CCCCCCeeEecCHHHHHHHHHHHH
Q 040733 333 VNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNE-IG-KVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 333 l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~-i~-~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+.++|++|++|+++.-+....+.. ...++++|.|+.++.. +. .....++.|.+|+.++|..|.+.|
T Consensus 209 ~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l 277 (289)
T 1q1a_A 209 HPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 277 (289)
T ss_dssp -CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHH
T ss_pred hccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHc
Confidence 679999999999986444333322 2346789999988864 21 223578999999999999998764
|
| >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.074 Score=52.44 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=50.7
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+.+.++++|++|++|+++.-+....+... ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.|.
T Consensus 174 a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~lg 244 (246)
T 1yc5_A 174 AIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD--IATLKYNMDVVEFARRVMEEGG 244 (246)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHcC
Confidence 44677899999999998754433333211 236789999998887643 4689999999999999987653
|
| >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.087 Score=52.15 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=51.4
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
+...++++|++|++|+++.-+....+... ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.+..
T Consensus 177 a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l~~ 248 (253)
T 1ma3_A 177 AIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADP--IFDVKIIGKAGEVLPKIVEEVKR 248 (253)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGG--GCSEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCC--ceeEEEeCCHHHHHHHHHHHHHH
Confidence 45677899999999998754433333211 236789999998887643 46899999999999999876653
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.46 Score=53.60 Aligned_cols=154 Identities=12% Similarity=-0.011 Sum_probs=97.2
Q ss_pred CCcHHHHHHHHHHHCCC--CEEEEccCCCcHHHH------HHHhh--CCCeEEec-CChhHHHHHHHHHHHHhCCcEEEE
Q 040733 69 PRKGADIIVEALERQGV--TTVFAYPGGASIEIH------QSLTR--SNIRSILP-RHEQGGIFAAEGYARSSGTPGVCL 137 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV--~~vFg~PG~~~~~l~------~al~~--~~i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~ 137 (643)
.++..+++.+.|.+..- ..+++.-.+-..... ..+.+ .+=|++.+ ..|++++.+|.|+|...|. -.++
T Consensus 348 ~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~-~P~~ 426 (651)
T 2e6k_A 348 PIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGY-RAYG 426 (651)
T ss_dssp CBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSC-EEEE
T ss_pred cHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCC-EEEE
Confidence 45666666666665542 235544432211100 11222 22467764 5999999999999977633 2334
Q ss_pred EccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccCHHHHhhccceee-eEeCCcCcHHHHHHHHHHH
Q 040733 138 VSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIPVVEVTRYMTKHN-YLVLDVDDIPRIIKEAFFI 213 (643)
Q Consensus 138 ~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~ 213 (643)
.|+.+...=+..+|..+...+.||+++. .+.-. .|. ..+|.+.+..+++.+..+. +...++.++..+++.|++.
T Consensus 427 ~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g--~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~ 504 (651)
T 2e6k_A 427 GTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIA--LGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRR 504 (651)
T ss_dssp EEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHC
T ss_pred EeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--cCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHc
Confidence 5667777777778888888899998884 33322 232 2468888889999886533 3455666777777777663
Q ss_pred hhcCCCCeEEEEcccc
Q 040733 214 ATSGRPGPVLIDIPVD 229 (643)
Q Consensus 214 A~s~~~GPV~i~iP~D 229 (643)
..+||+|.+|..
T Consensus 505 ----~~~Pv~i~~~r~ 516 (651)
T 2e6k_A 505 ----KEGPTALVLTRQ 516 (651)
T ss_dssp ----CSSCEEEECCSS
T ss_pred ----CCCCEEEEEeCC
Confidence 258999999864
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.44 Score=53.49 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCcHHHHHHHHHHHCC--CCEEEEc----cCC-CcHHHHHHHhhCCCeEEe-cCChhHHHHHHHHHHHHhCCcEEEEEcc
Q 040733 69 PRKGADIIVEALERQG--VTTVFAY----PGG-ASIEIHQSLTRSNIRSIL-PRHEQGGIFAAEGYARSSGTPGVCLVSS 140 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~G--V~~vFg~----PG~-~~~~l~~al~~~~i~~i~-~~hE~~A~~~A~Gyar~sg~~gv~~~t~ 140 (643)
.++..+++.+.|.+.. -+.|+.+ +++ ....|.+.+ +=+++. ...|++++.+|.|+|...-+|-+ .++
T Consensus 318 ~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~---~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~--~~~ 392 (621)
T 2o1s_A 318 LPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKF---PDRYFDVAIAEQHAVTFAAGLAIGGYKPIV--AIY 392 (621)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---TTTEEECCSCHHHHHHHHHHHHHTTCEEEE--EEE
T ss_pred hHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhC---CCceEecCcCHHHHHHHHHHHHHCCCEEEE--Eeh
Confidence 3567777766665543 2335554 443 334444433 346776 56999999999999987434333 347
Q ss_pred chhhHHHHHH-HHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHHhhc
Q 040733 141 GPGVTNIMTG-LMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 141 GpG~~N~~~g-l~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s 216 (643)
++.+.-++-- +..+...++||+++...... .|.+ .+|......+++.+..+.. ...++.++..+++.|++.+
T Consensus 393 ~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~-- 468 (621)
T 2o1s_A 393 STFLQRAYDQVLHDVAIQKLPVLFAIDRAGI--VGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN-- 468 (621)
T ss_dssp TTGGGGGHHHHHHTTTTTTCCCEEEEESCBC--CCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC--
T ss_pred HhHHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC--
Confidence 7877655544 45567789999888733222 2322 4666667788888865444 4567777888888877643
Q ss_pred CCCCeEEEEcccc
Q 040733 217 GRPGPVLIDIPVD 229 (643)
Q Consensus 217 ~~~GPV~i~iP~D 229 (643)
++||+|..|..
T Consensus 469 --~~Pv~i~~~r~ 479 (621)
T 2o1s_A 469 --DGPSAVRYPRG 479 (621)
T ss_dssp --SSCEEEECCSS
T ss_pred --CCCEEEEeCCC
Confidence 58999999865
|
| >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.099 Score=51.61 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=50.5
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+.+.++++|++|++|+++.-+....+... ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 171 a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~--~~~~~i~~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 171 AMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTP--IADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp HHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCc--ceeEEEeCCHHHHHHHHHHHHH
Confidence 34567899999999998754333222211 246789999998887643 4689999999999999876654
|
| >1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.17 Score=51.61 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=75.9
Q ss_pred cEEEEcC-Cch--hhHHHHHHHHHHhCCceeecCC--CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCc
Q 040733 274 PVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTTM--GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE 348 (643)
Q Consensus 274 PvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~~--gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~ 348 (643)
.+|++|+ |.. +..+.+.+||++||.-|-.|-. -.|.+|. .+.+|..|. .-.++|-|.+|-+=.-
T Consensus 198 ~ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk---------~V~P~lYiA~GISGAi 266 (315)
T 1efv_A 198 KVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPN--DMQVGQTGK---------IVAPELYIAVGISGAI 266 (315)
T ss_dssp SEEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTSB---------CCCCSEEEEESCCCCH
T ss_pred CEEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCH--HheeccCCc---------ccCcceEEEecccCcH
Confidence 3666655 443 3457899999999999987732 2467764 455665542 3478999999977322
Q ss_pred cccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 349 RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 349 ~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
....+ ......||-|+.|++.-= ...+|+.|++|+.+++.+|.+.++
T Consensus 267 QHlaG---m~~s~~IVAIN~D~~ApI-f~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 267 QHLAG---MKDSKTIVAINKDPEAPI-FQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp HHHTT---TTTCSEEEEEESCTTCGG-GGTCSEEEESCHHHHHHHHHHHTC
T ss_pred HHHhh---cccCCEEEEEeCCCCCCc-chhcCeEEeeeHHHHHHHHHHHHh
Confidence 21111 233456889999987421 236899999999999999998764
|
| >3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.28 Score=49.16 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=54.8
Q ss_pred HHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccC----CCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 330 NYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGK----VKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 330 ~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~----~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
+..++++|+||++.+.+...-+++. .+...+++.||+.|....| ..-..+.++.|+..||..|.+.|..
T Consensus 268 r~~~~~a~~vimlaTmLHSIAtGNm--~Ps~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~~ 340 (345)
T 3c2q_A 268 RTTVMDKKMVIMLSTLLHSVATGNL--MPSYIKTVCVDIQPSTVTKLMDRGTSQAIGVVTDVGVFLVLLLKELER 340 (345)
T ss_dssp HHHHTTCSEEEEESCHHHHHHHHTT--CCTTSEEEEEESCHHHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHhccCCchHHHHHHHHHHHhccc--CcccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHHH
Confidence 4567899999999999877777664 2345689999999997754 3455689999999999999877653
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.34 Score=53.81 Aligned_cols=149 Identities=11% Similarity=0.035 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCCCCeEE-EeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cc
Q 040733 437 QYAIQILNELTDDEETII-STGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SF 514 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv-~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf 514 (643)
+.+++.|.+.== +.++ +.+..+. .+...+.. ..-+++....-. .+.-+|.|.+.+. +++.++++-=| |+
T Consensus 15 ~~l~~~L~~~GV--~~vfg~PG~~~~-~l~~al~~--~~i~~v~~~~E~---~Aa~~A~Gyar~t-g~p~v~~~TsGpG~ 85 (566)
T 1ozh_A 15 DLVVSQLEAQGV--RQVFGIPGAKID-KVFDSLLD--SSIRIIPVRHEA---NAAFMAAAVGRIT-GKAGVALVTSGPGC 85 (566)
T ss_dssp HHHHHHHHHHTC--CEEEEECCTTTH-HHHHHGGG--SSSEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECSTHHH
T ss_pred HHHHHHHHHCCC--CEEEEcCCCchH-HHHHHHHh--CCCcEEEeCCHH---HHHHHHHHHHHHH-CCCEEEEEccChHH
Confidence 456666666522 3343 3333332 22222222 235565543322 2456778877765 57777776555 45
Q ss_pred cCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH
Q 040733 515 IMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV 594 (643)
Q Consensus 515 ~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL 594 (643)
.-.++.+.+|...++|+++|.-+-....+- .. .....|...+.+.+-...+++++++++
T Consensus 86 ~N~~~~l~~A~~~~vPll~itg~~~~~~~~--------------~~-------~~Q~~d~~~~~~~~tk~~~~v~~~~~~ 144 (566)
T 1ozh_A 86 SNLITGMATANSEGDPVVALGGAVKRADKA--------------KQ-------VHQSMDTVAMFSPVTKYAIEVTAPDAL 144 (566)
T ss_dssp HTTHHHHHHHHHHTCCEEEEEEECCTTTC---------------------------CCCHHHHHGGGCSEEEECCSGGGH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccccCC--------------CC-------cccccCHHHHHHHHhheEEEcCCHHHH
Confidence 556899999999999999998776542210 00 024579999999999999999999998
Q ss_pred HHHHHHHHh-----CCCcEEEEEEeC
Q 040733 595 RAAIQLMLE-----TPGPYLLDVMVS 615 (643)
Q Consensus 595 ~~al~~al~-----~~gp~lIeV~v~ 615 (643)
...+++|+. .+||+.|+++.|
T Consensus 145 ~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 145 AEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 877777653 369999999987
|
| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 | Back alignment and structure |
|---|
Probab=93.13 E-value=0.23 Score=51.91 Aligned_cols=115 Identities=17% Similarity=-0.000 Sum_probs=71.1
Q ss_pred CeEEec-CChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHH-hhhC--------CCCEEEEeCCCcccccCCC-
Q 040733 108 IRSILP-RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMD-AYSD--------SIPILAITGQVSQKLLGTD- 176 (643)
Q Consensus 108 i~~i~~-~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~-A~~~--------~vPvlvItg~~~~~~~g~~- 176 (643)
-|++.+ ..|++++.+|.|+|.. |...++-.|.++.+.-++..|.. +... ++||+++..... ..+.+
T Consensus 98 ~r~~d~gIaE~~~v~~a~G~A~~-G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg--~~g~g~ 174 (369)
T 1ik6_A 98 ERVIDTPLNEGGILGFAMGMAMA-GLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS--GTRGGL 174 (369)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC--------
T ss_pred CcEEECcccHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC--CCCCCc
Confidence 467764 5999999999999987 54334434788887767777655 3222 899987763222 11222
Q ss_pred CCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccchh
Q 040733 177 AFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 177 ~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv~ 231 (643)
.+|..+ ..+++.+..+... ..++.++..+++.|++ .++||+|..|..+.
T Consensus 175 ~hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-----~~~Pv~i~~p~~l~ 224 (369)
T 1ik6_A 175 YHSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-----GDDPVVFLEPKILY 224 (369)
T ss_dssp -----H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-----SSSCEEEEEEGGGS
T ss_pred cccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEehhhh
Confidence 233333 5788888765543 5677788888888876 24899999887764
|
| >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.15 Score=52.18 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=75.8
Q ss_pred CcEEEEcC-Cch--hhHHHHHHHHHHhCCceeecCC--CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccC
Q 040733 273 NPVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTTM--GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFN 347 (643)
Q Consensus 273 rPvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~~--gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~ 347 (643)
-.+|++|+ |.. +..+.+.+||++||.-|-.|-. -.|.+|. .+.+|..|. .+.-|+|-|.+|-+=.
T Consensus 202 A~ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk--------~V~P~~lYiA~GISGA 271 (320)
T 1o97_D 202 VDFIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPK--SRQVGQSGK--------VVGSCKLYVAMGISGS 271 (320)
T ss_dssp SSEEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTSB--------CCTTCSEEEEESCCCC
T ss_pred CCEEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeecCce--------EecccceEEEEeccCc
Confidence 34666655 443 3567899999999999987732 2467764 455665542 2445599999997632
Q ss_pred ccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 348 ERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 348 ~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
-....+ ......||-|+.|++.-= ...+|+.|++|+.+++.+|.+.+
T Consensus 272 iQHlaG---m~~s~~IVAIN~D~~ApI-F~~ADygiVgDl~~vvP~L~~~l 318 (320)
T 1o97_D 272 IQHMAG---MKHVPTIIAVNTDPGASI-FTIAKYGIVADIFDIEEELKAQL 318 (320)
T ss_dssp HHHHHH---HTTCSEEEEECSCTTCGG-GGTCSEEECSCHHHHHHHHHHHC
T ss_pred HHHHhh---cccCCEEEEEeCCCCCCc-ccccCeEEeeeHHHHHHHHHHHH
Confidence 111111 223456889999987421 23689999999999999998765
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.44 Score=54.09 Aligned_cols=156 Identities=11% Similarity=0.030 Sum_probs=97.1
Q ss_pred CCCCcHHHHHHHHHHHCCCC--EEEEccCCCcHHHH------HHHhh-------CCCeEE-ecCChhHHHHHHHHHHHHh
Q 040733 67 DKPRKGADIIVEALERQGVT--TVFAYPGGASIEIH------QSLTR-------SNIRSI-LPRHEQGGIFAAEGYARSS 130 (643)
Q Consensus 67 ~~~~~~a~~lv~~L~~~GV~--~vFg~PG~~~~~l~------~al~~-------~~i~~i-~~~hE~~A~~~A~Gyar~s 130 (643)
...++..+++-++|.+..-+ .+++.-.+-...-. ..+.+ .+=|++ ....|++++.+|.|+|...
T Consensus 353 ~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~GlA~~G 432 (680)
T 1gpu_A 353 DSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFG 432 (680)
T ss_dssp SCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHHHHHhcC
Confidence 44567777777777776543 34544432111000 01221 123455 3678999999999999876
Q ss_pred CCc-EEEEEccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccCHHHHhhccceee-eEeCCcCcHHH
Q 040733 131 GTP-GVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIPVVEVTRYMTKHN-YLVLDVDDIPR 205 (643)
Q Consensus 131 g~~-gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~ 205 (643)
|.. .++ .|..+-..-+..+|..+...+.||+++. .+... .|. ..+|.+.+..+++.+.... +...++.++..
T Consensus 433 g~~~P~~-~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g--~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~ 509 (680)
T 1gpu_A 433 ANYKPYG-GTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIG--VGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEVSA 509 (680)
T ss_dssp TTCEEEE-EEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSHHHHHHTSSSCEEECCCSHHHHHH
T ss_pred CCceEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc--cCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHH
Confidence 433 333 4666666667777887888899999885 23222 232 2468888899999886432 23445556666
Q ss_pred HHHHHHHHhhcCCCCeEEEEcccc
Q 040733 206 IIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 206 ~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+++.|++ ..++||+|-+|..
T Consensus 510 ~l~~A~~----~~~~Pv~i~~~r~ 529 (680)
T 1gpu_A 510 AYKNSLE----SKHTPSIIALSRQ 529 (680)
T ss_dssp HHHHHHH----CSSCCEEEECCSS
T ss_pred HHHHHHH----hCCCcEEEEecCC
Confidence 6666655 3359999999863
|
| >3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.16 Score=51.62 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=51.5
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+...+++||++|++|+++.-+...++.. .....+++.|+.++...+ ...++.|.+++.++|..|.+.|.
T Consensus 200 a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d--~~adl~i~g~~~evl~~L~~~Lg 270 (318)
T 3k35_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD--RHADLRIHGYVDEVMTRLMKHLG 270 (318)
T ss_dssp HHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTG--GGCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC--CcccEEEeCCHHHHHHHHHHHhC
Confidence 4567789999999999986443333321 124568999998887654 35789999999999999988775
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.68 Score=52.41 Aligned_cols=115 Identities=12% Similarity=0.005 Sum_probs=79.4
Q ss_pred CeEEe-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccCH
Q 040733 108 IRSIL-PRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIPV 183 (643)
Q Consensus 108 i~~i~-~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d~ 183 (643)
=|++. ...|++++.+|.|+|...|...++. |..+-..-+..+|..+...+.||+++. .+... .|. ..+|.+.+
T Consensus 402 ~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~-~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g--~G~dG~tHq~~ed 478 (673)
T 1r9j_A 402 GRYIRFGVREHAMCAILNGLDAHDGIIPFGG-TFLNFIGYALGAVRLAAISHHRVIYVATHDSIG--VGEDGPTHQPVEL 478 (673)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSH
T ss_pred CCeEecCccHHHHHHHHHHHHhcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEECCccC--cCCCCcccCCHHH
Confidence 35664 6899999999999998755433333 466666677778888888999998885 22222 232 24688888
Q ss_pred HHHhhcccee-eeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 184 VEVTRYMTKH-NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 184 ~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
..+++.+... .+...++.++..+++.|++. ..+||+|.+|..
T Consensus 479 la~lr~iP~l~V~~Pad~~e~~~~l~~a~~~----~~~Pv~i~~~r~ 521 (673)
T 1r9j_A 479 VAALRAMPNLQVIRPSDQTETSGAWAVALSS----IHTPTVLCLSRQ 521 (673)
T ss_dssp HHHHHHSTTCEEECCSSHHHHHHHHHHHHHC----TTCCEEEECCSS
T ss_pred HHHHcCCCCCEEEeCCCHHHHHHHHHHHHHh----CCCeEEEEEcCC
Confidence 9999977642 33445556666666666653 359999998864
|
| >3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.13 Score=51.50 Aligned_cols=66 Identities=9% Similarity=0.078 Sum_probs=49.1
Q ss_pred HHHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHH
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMN 395 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~ 395 (643)
.+...++++|++|++|+++.-+....+-. ...+++++.|+.++...+. ..++.|.+++.++|..|+
T Consensus 205 ~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~--~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 205 EVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN--RFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGG--GSSEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCc--ceeEEEeCCHHHHHHHHh
Confidence 34467789999999999986443333211 2356789999998877654 578999999999998875
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.41 Score=53.19 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=79.6
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. ++++++++-=| +....+..+.+|...++|+++|.-+-....+ +.+ .
T Consensus 60 Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~v~~A~~~~~Pll~itg~~~~~~~---------~~~---~-------- 118 (573)
T 2iht_A 60 AGVAADVLARIT-GRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDI---------FPN---D-------- 118 (573)
T ss_dssp HHHHHHHHHHHH-CSCEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEESCGGGC---------CTT---T--------
T ss_pred HHHHHHHHHHHH-CCCEEEEEccCchHHHHHHHHHHHHhhCCCEEEEcccCccccc---------CCc---C--------
Confidence 456778877766 57777776555 4444588999999999999999877553211 000 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
..+..|...+.+.+-...+++++++++...+++|+. .+||+.|+++.|-
T Consensus 119 ~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 119 THQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp STTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred ccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 134579999999999999999999998888887764 3589999999874
|
| >2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.18 Score=52.47 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=50.8
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc-cccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+...+.++|++|++|+++.-+...++- .+..++.+|.|+.++... ...++.|.+|+.++|..|.+.|.
T Consensus 249 a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~---~~~dl~i~g~~~~vl~~L~~~lg 317 (354)
T 2hjh_A 249 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCG 317 (354)
T ss_dssp HHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCC---CCcCEEEeCCHHHHHHHHHHHcC
Confidence 445678999999999998644333332 223366899999888753 24789999999999999988765
|
| >3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.16 Score=52.15 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=51.4
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+...+.+||++|++|+++.-+...++-.. ....++|.|+.++...+ ...++.|.+++.++|..|.+.|.
T Consensus 200 A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d--~~adl~i~g~a~evl~~L~~~Lg 270 (355)
T 3pki_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD--RHADLRIHGYVDEVMTRLMEHLG 270 (355)
T ss_dssp HHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTG--GGCSEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC--CccCEEEeCCHHHHHHHHHHHhC
Confidence 44677899999999999864433333211 23568999998887654 35789999999999999988775
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.5 Score=52.65 Aligned_cols=106 Identities=19% Similarity=0.153 Sum_probs=80.2
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++-=| |..-.+..+.+|...++|+++|.-+-....+ +..
T Consensus 62 Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~--------------g~~------- 119 (590)
T 1ybh_A 62 GVFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMI--------------GTD------- 119 (590)
T ss_dssp HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGT--------------TTT-------
T ss_pred HHHHHHHHHHHH-CCCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCcccc--------------CCC-------
Confidence 566788887776 56666666555 4555689999999999999999876543210 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.....|...+.+.+-...+++++++++...+++|+. .+||+.|+++.|-
T Consensus 120 ~~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~dv 173 (590)
T 1ybh_A 120 AFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDI 173 (590)
T ss_dssp CTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred cccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcch
Confidence 124579999999999999999999999988888874 3589999998764
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.43 Score=54.14 Aligned_cols=151 Identities=16% Similarity=0.101 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-ccc
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFI 515 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~ 515 (643)
+.+++.|.+.== +.++..-.+....+ ...+.-...-+++....-. .+.-+|.|.+.+. +++.|+++-=| |..
T Consensus 86 ~~lv~~L~~~GV--~~vFg~PG~~~~pl-~dal~~~~~i~~v~~~hE~---~Aa~aAdGyAr~t-Gkpgvv~~TsGpG~~ 158 (677)
T 1t9b_A 86 QIFNEMMSRQNV--DTVFGYPGGAILPV-YDAIHNSDKFNFVLPKHEQ---GAGHMAEGYARAS-GKPGVVLVTSGPGAT 158 (677)
T ss_dssp HHHHHHHHHTTC--CEEEECCCGGGHHH-HHHTTTCSSSEEECCSSHH---HHHHHHHHHHHHH-SSCEEEEECSTHHHH
T ss_pred HHHHHHHHHcCC--CEEEEecCccHHHH-HHHHHhCCCCeEEEeCChH---HHHHHHHHHHHHH-CCCEEEEECCChHHH
Confidence 455666655422 34444332332222 2223212235666543322 2456778877776 56766666555 555
Q ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHH
Q 040733 516 MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595 (643)
Q Consensus 516 m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~ 595 (643)
-.++.|.+|...++|+++|.-+-....+ +.. .....|...+.+.+-...+++++++++.
T Consensus 159 N~~~gia~A~~d~vPllvItG~~~~~~~--------------g~~-------a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~ 217 (677)
T 1t9b_A 159 NVVTPMADAFADGIPMVVFTGQVPTSAI--------------GTD-------AFQEADVVGISRSCTKWNVMVKSVEELP 217 (677)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCTTTT--------------TSC-------CTTCCCHHHHTGGGSSEEEECCSGGGHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChhhc--------------CCC-------CccccCHHHHhhhheeEEEEcCCHHHHH
Confidence 5699999999999999999876543211 000 1245799999999999999999999998
Q ss_pred HHHHHHHh-----CCCcEEEEEEeC
Q 040733 596 AAIQLMLE-----TPGPYLLDVMVS 615 (643)
Q Consensus 596 ~al~~al~-----~~gp~lIeV~v~ 615 (643)
..+++|+. .+||++|+++.|
T Consensus 218 ~~i~~A~~~A~~grpGPV~l~lP~D 242 (677)
T 1t9b_A 218 LRINEAFEIATSGRPGPVLVDLPKD 242 (677)
T ss_dssp HHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHHHHhhCCCceEEEEcCHH
Confidence 88888775 468999999944
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.55 Score=52.62 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=85.3
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc-ccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS-FIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs-f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|.|.+.+..+++.|+++-=|. ....++.|.+|...++|+++|.-+-....+
T Consensus 66 i~~i~~~~E~---~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg~~p~~~~---------- 132 (616)
T 2pan_A 66 IRHILARHVE---GASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARL---------- 132 (616)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEEECCGGGT----------
T ss_pred CcEEeeCCHH---HHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEecCCccccc----------
Confidence 4555543322 25667888888864567777665553 445589999999999999999887654210
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
+. + .....|..++++.+-...+++.+++++...+++|+. .+||+.|+++.|-
T Consensus 133 ----~~--~-----~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d~ 189 (616)
T 2pan_A 133 ----HK--E-----DFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDV 189 (616)
T ss_dssp ----TT--T-----CTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHHH
T ss_pred ----Cc--c-----cccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchhh
Confidence 00 0 124579999999999999999999999888888774 3689999999864
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.45 Score=53.38 Aligned_cols=113 Identities=13% Similarity=-0.049 Sum_probs=79.1
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccCHH
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIPVV 184 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d~~ 184 (643)
|++ ...-|++++.+|.|.|...|..-+|- |..+=..-+...|..+...+.||+++. .+.-. .|. ..+|.+.+.
T Consensus 383 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-~f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g--~G~dG~THq~~ed~ 459 (632)
T 3l84_A 383 KNIHFGIREHAMAAINNAFARYGIFLPFSA-TFFIFSEYLKPAARIAALMKIKHFFIFTHDSIG--VGEDGPTHQPIEQL 459 (632)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG--GCTTCGGGSCSSHH
T ss_pred CeEEeCccHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHHhccCCCEEEEEECCCcC--CCCCCCCCCCHhHH
Confidence 455 56799999999999998855433332 366666677778877778899999884 33222 232 247888889
Q ss_pred HHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 185 EVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 185 ~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+++.+..... ...++.++..+++.|++ .+|||+|.+|..
T Consensus 460 a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-----~~~Pv~ir~~r~ 500 (632)
T 3l84_A 460 STFRAMPNFLTFRPADGVENVKAWQIALN-----ADIPSAFVLSRQ 500 (632)
T ss_dssp HHHHHSSSCEEECCSSHHHHHHHHHHHHH-----CSSCEEEECCSS
T ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEcCC
Confidence 99999875433 34556667777777665 359999999864
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.6 Score=51.68 Aligned_cols=105 Identities=21% Similarity=0.178 Sum_probs=79.3
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +|+.++++-=| |....++.|.+|...++|+++|.-+-....+ +. +
T Consensus 53 Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~--------------~~--~----- 110 (563)
T 2uz1_A 53 AGHAAEGYARAG-AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDD--------------ET--N----- 110 (563)
T ss_dssp HHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGT--------------TS--C-----
T ss_pred HHHHHHHHHHHh-CCCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccC--------------Cc--h-----
Confidence 556778877776 56777766555 5556689999999999999999876543211 00 0
Q ss_pred CCCC-CCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeC
Q 040733 568 SEIF-PDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVS 615 (643)
Q Consensus 568 ~~~~-~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~ 615 (643)
.... .|...+.+.+-...+++++++++...+++|+. .+||+.|+++.|
T Consensus 111 ~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 111 TLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 1245 79999999999999999999998888777664 459999999988
|
| >1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 | Back alignment and structure |
|---|
Probab=92.50 E-value=0.22 Score=51.82 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=46.6
Q ss_pred hhhcCCEEEEecCccCccccCcccc-ccCCceEEEEcCCccc-cc-CCCCCCeeEecCHHHHHHHHHHHH
Q 040733 332 AVNECDLLLAAGVRFNERMTSKLED-FATRAKIVHIDIDSNE-IG-KVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 332 ~l~~aDlvL~vG~~~~~~~t~~~~~-~~~~~~iI~Id~d~~~-i~-~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
.+.++|++|++|+++.-+....+.. +..++++|.|+.++.. +. .....++.|.+|+..+|..|.+.|
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~L 285 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 285 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHH
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHc
Confidence 3569999999999986544333322 2346788999988864 21 223478999999999999998765
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=92.43 E-value=0.51 Score=53.50 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=79.0
Q ss_pred CeEEe-cCChhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEe-CCCcccccCC--CCCCccC
Q 040733 108 IRSIL-PRHEQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAIT-GQVSQKLLGT--DAFQEIP 182 (643)
Q Consensus 108 i~~i~-~~hE~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvIt-g~~~~~~~g~--~~~Q~~d 182 (643)
=|++. ...|++++.+|.|+|... |...++ .|..+..+-+..+|..+...+.||+++. .+... .|. ..+|.+.
T Consensus 414 ~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~-~t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g--~G~dG~tHq~~e 490 (675)
T 1itz_A 414 ERNVRFGVREHGMGAICNGIALHSPGFVPYC-ATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIG--LGEDGPTHQPIE 490 (675)
T ss_dssp CCBCCCCSCHHHHHHHHHHHHTTCTTCEEEE-EEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSS
T ss_pred CCeEeecccHHHHHHHHHHHHhcCCCCEEEE-EEHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--cCCCCCCcCcHH
Confidence 35554 559999999999999765 233333 3577777777888888889999998886 22222 232 2468888
Q ss_pred HHHHhhcccee-eeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 183 VVEVTRYMTKH-NYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 183 ~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+..+++.+... .+...++.++..+++.|++ ...+||+|.+|.
T Consensus 491 dla~lr~iP~l~V~~Pad~~e~~~~l~~a~~----~~~~Pv~i~~~r 533 (675)
T 1itz_A 491 HLVSFRAMPNILMLRPADGNETAGAYKVAVL----NRKRPSILALSR 533 (675)
T ss_dssp HHHHHHSSSSCEEECCCSHHHHHHHHHHHHH----CTTSCEEEEECS
T ss_pred HHHHhccCCCeEEEECCCHHHHHHHHHHHHH----hCCCcEEEEecC
Confidence 89999977642 3344555666666666665 335999999886
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.64 Score=51.31 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=77.2
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.++++-=| |....++.+.+|...++|+++|.-+-....+ +..
T Consensus 53 Aa~~A~GyAr~t-g~~~v~~~TsGpG~~N~~~gi~~A~~~~vPvl~itg~~~~~~~--------------~~~------- 110 (549)
T 3eya_A 53 AAFAAGAEAQLS-GELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEI--------------GSG------- 110 (549)
T ss_dssp HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEESCGGGT--------------TSC-------
T ss_pred HHHHHHHHHHHh-CCCEEEEeCCCCcHhhhHHHHHHHHhhCCCEEEEeCCCchhhc--------------CCC-------
Confidence 455777877765 56777776555 4555689999999999999999876432110 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~ 616 (643)
..+..|..++.+.+-...+++.+++++.+.+++|+ ...||+.|+++.|-
T Consensus 111 ~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv 163 (549)
T 3eya_A 111 YFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDV 163 (549)
T ss_dssp CTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHHH
T ss_pred CCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhH
Confidence 12457899999998888999999998777777665 46799999998753
|
| >1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2 | Back alignment and structure |
|---|
Probab=91.47 E-value=0.37 Score=48.97 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=74.0
Q ss_pred cEEEEcC-Cch--hhHHHHHHHHHHhCCceeecCC--CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCc
Q 040733 274 PVLCVGG-GCL--NSSEELRKFVGLTGIPVTCTTM--GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNE 348 (643)
Q Consensus 274 PvIl~G~-g~~--~~~~~l~~lae~lg~PV~tt~~--gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~ 348 (643)
.+|++|+ |.. +..+.+.+||++||.-|-.|-. -.|.+|. .+.+|..|. .-.++|-|.+|-+=.-
T Consensus 193 ~ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk---------~V~P~lYiA~GISGAi 261 (307)
T 1efp_A 193 RRVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPN--DWQVGQTGK---------VVAPELYVAVGISGAI 261 (307)
T ss_dssp SEEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSSSSB---------CCCCSEEEEESCCCCH
T ss_pred CEEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeccCCc---------ccCCceEEEEeccCcH
Confidence 4666655 443 2457899999999999987732 2467764 455665542 3478999999977322
Q ss_pred cccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHH
Q 040733 349 RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMI 397 (643)
Q Consensus 349 ~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~ 397 (643)
....+ ......||-|+.|++.-= ...+|+.|++|+.+++.+|.+.
T Consensus 262 QHlaG---m~~s~~IVAIN~D~~ApI-F~~ADygiVgDl~~v~P~L~~~ 306 (307)
T 1efp_A 262 QHLAG---MKDSKVIVAINKDEEAPI-FQIADYGLVGDLFSVVPELTGK 306 (307)
T ss_dssp HHHTT---TTTCSEEEEEESCTTCGG-GGTCSEEEESCHHHHHHHHHHT
T ss_pred HHHhh---hccCCEEEEEeCCCCCCc-ccccCeEEeeeHHHHHHHHHhh
Confidence 21111 233456889999987421 2368999999999999998764
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.24 E-value=0.55 Score=52.50 Aligned_cols=106 Identities=12% Similarity=-0.007 Sum_probs=76.0
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.||++-=| |..-.++.+.+|...++|+++|.-+-...-+ +..
T Consensus 81 Aa~aA~GyAr~t-gkpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~~~~~~~--------------g~~------- 138 (604)
T 2x7j_A 81 AGFFALGLAKAK-QRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELR--------------EVG------- 138 (604)
T ss_dssp HHHHHHHHHHHH-TSCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGS--------------SSC-------
T ss_pred HHHHHHHHHHhh-CCCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHh--------------CCC-------
Confidence 455777777766 57777776555 4555689999999999999999876543110 000
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhH-------HHHHHHHHH----h-CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKD-------VRAAIQLML----E-TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~e-------L~~al~~al----~-~~gp~lIeV~v~~ 616 (643)
.....|...+.+.+-...++++++++ +...+++|+ . .+||+.|+++.|-
T Consensus 139 ~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 139 APQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp CTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred CCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 02456888888888888999988876 666666655 3 5799999999874
|
| >1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=1.7 Score=40.22 Aligned_cols=131 Identities=17% Similarity=0.228 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCch--hhH---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCC-----------
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCL--NSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGM----------- 323 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~--~~~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~----------- 323 (643)
..++++++|..|++.+|+-|+|-. .++ .+|.++.+..|+-|--- -||..-.+-|.
T Consensus 34 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhMNVLLAEA~VP 104 (207)
T 1djl_A 34 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFG---------IHPVAGRMPGQLNVLLAEAGVP 104 (207)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEE---------ECTTCSSSTTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEE---------eCccCCCCCCCCcEEEEEeCCC
Confidence 356788999999999999999865 344 44555555667776221 13332111120
Q ss_pred ----CCcHHHHHhhhcCCEEEEecCccC-------cccc--Cc---cccccCCceEEEEcCCc----ccccC--CC-CCC
Q 040733 324 ----FGTVYANYAVNECDLLLAAGVRFN-------ERMT--SK---LEDFATRAKIVHIDIDS----NEIGK--VK-LPD 380 (643)
Q Consensus 324 ----~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t--~~---~~~~~~~~~iI~Id~d~----~~i~~--~~-~~~ 380 (643)
.--...|.-+.+.|++|+||..-. +..+ .+ ++.|. ..++|.+--.- .-+.. .| +-+
T Consensus 105 Yd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt 183 (207)
T 1djl_A 105 YDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYAAVDNPIFYKPNT 183 (207)
T ss_dssp GGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGGSTTE
T ss_pred HHHHhhHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeeccee-cCEEEEEECCCCCCcCCCcCcceecCCc
Confidence 011345667789999999997521 0001 01 11222 22455442111 11111 11 234
Q ss_pred eeEecCHHHHHHHHHHHHhh
Q 040733 381 VSICADAKLVFNRMNMILES 400 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l~~ 400 (643)
.-+.||++..++.|...++.
T Consensus 184 ~MlfGDAK~~~~~l~~~l~~ 203 (207)
T 1djl_A 184 AMLLGDAKKTCDALQAKVRE 203 (207)
T ss_dssp EEEESCHHHHHHHHHHHHHT
T ss_pred eEEeccHHHHHHHHHHHHHH
Confidence 55679999999999887764
|
| >1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C* | Back alignment and structure |
|---|
Probab=91.04 E-value=2.1 Score=38.66 Aligned_cols=129 Identities=13% Similarity=0.177 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCch--hhH---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCC-----------
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCL--NSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGM----------- 323 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~--~~~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~----------- 323 (643)
..++++++|..|++.+|+-|+|-. .++ .++.++.+.-|+-|--- -||-.--+-|.
T Consensus 12 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhmNVLLAEA~VP 82 (180)
T 1pno_A 12 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYA---------IHPVAGRMPGHMNVLLAEANVP 82 (180)
T ss_dssp CHHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEE---------ECTTCTTSTTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEE---------eccccccCCCcceEEEEeeCCC
Confidence 367788999999999999999865 344 44555555567766221 13332111120
Q ss_pred ----CCcHHHHHhhhcCCEEEEecCccC-------cccc--Cc---cccccCCceEEEEcCC----cccccC--CC-CCC
Q 040733 324 ----FGTVYANYAVNECDLLLAAGVRFN-------ERMT--SK---LEDFATRAKIVHIDID----SNEIGK--VK-LPD 380 (643)
Q Consensus 324 ----~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t--~~---~~~~~~~~~iI~Id~d----~~~i~~--~~-~~~ 380 (643)
.-....|.-+.+.|++|++|..-. +..+ .+ ++.|. ..++|.+--. ..-+.. .| +-+
T Consensus 83 Yd~v~EMdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt 161 (180)
T 1pno_A 83 YDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEK-AGTVLFIKRSMASGYAGVENELFFRNNT 161 (180)
T ss_dssp GGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGTSTTE
T ss_pred HHHHhhHHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhh-CCEEEEEECCCCCCcCCCcCcceecCCc
Confidence 011345667789999999997521 0011 01 11222 2244444211 111111 11 234
Q ss_pred eeEecCHHHHHHHHHHHH
Q 040733 381 VSICADAKLVFNRMNMIL 398 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l 398 (643)
.-+.||++..++.|...+
T Consensus 162 ~MlfGDAK~~~~~l~~~l 179 (180)
T 1pno_A 162 MMLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred eEEeccHHHHHHHHHHHh
Confidence 556799999999988654
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=90.81 E-value=0.42 Score=52.93 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=74.3
Q ss_pred CeEEecCChhH---HHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-c--------CC
Q 040733 108 IRSILPRHEQG---GIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-L--------GT 175 (643)
Q Consensus 108 i~~i~~~hE~~---A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-~--------g~ 175 (643)
.+++..+--.+ ..-+|.|.+.+.+++.+|++-=| ++.-.+..|..|...+.|+++|.-+..... . .+
T Consensus 407 ~~~~~~~g~~g~~G~l~~A~Gaa~a~~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 485 (556)
T 3hww_A 407 YPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDL-SALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSER 485 (556)
T ss_dssp CCEEECCSSCCSSSHHHHHHHHHHHHCCCEEEEEEHH-HHHHTGGGHHHHTTCSSCEEEEEEESCC--------------
T ss_pred ceEEecCcccccccHHHHHHHHHhcCCCcEEEEEccH-HhhhcchhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhH
Confidence 55655442222 25678898888888887775444 344446789999999999988875443210 0 01
Q ss_pred ----CCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 176 ----DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 176 ----~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
...+..|...+.+.+--..+++.+++++.+.+++| ... .||+.|++..|
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a----~~~-~gp~liev~~~ 538 (556)
T 3hww_A 486 ERFYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADA----WRT-PTTTVIEMVVN 538 (556)
T ss_dssp ---CCCCCCCCSHHHHHHTTCEEECCSSHHHHHHHHHHH----TTS-SSEEEEEEECC
T ss_pred HHhccCCCCCCHHHHHHHcCCcEEecCCHHHHHHHHHHH----HhC-CCCEEEEEECC
Confidence 11234677788887766677787776665555554 443 59999999765
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.6 Score=52.20 Aligned_cols=118 Identities=15% Similarity=0.075 Sum_probs=81.3
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|.|.+.+. +++.||++==| |....++.+.+|...++|+++|.-+-....+
T Consensus 51 i~~i~~~hE~---~Aa~aA~GyAr~t-g~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG~~~~~~~---------- 116 (603)
T 4feg_A 51 IHYIQVRHEE---VGAMAAAADAKLT-GKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGM---------- 116 (603)
T ss_dssp SEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTT----------
T ss_pred CeEEEecChH---HHHHHHHHHHHHh-CCceEEEecCCchHHHHHHHHHHHHHcCCCEEEEecCCccccc----------
Confidence 4565543321 2456777777665 56777766555 5556689999999999999999876442110
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~ 617 (643)
+.. .....|...+.+.+-...+++.+++++...+++|+ ...||+.|+++.|-.
T Consensus 117 ----~~~-------~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv~ 173 (603)
T 4feg_A 117 ----NMD-------TFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLP 173 (603)
T ss_dssp ----TSC-------CTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETTGG
T ss_pred ----CCC-------ccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhhh
Confidence 000 12446888888888888899999988776666654 468999999998643
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=1.1 Score=49.59 Aligned_cols=111 Identities=19% Similarity=0.110 Sum_probs=73.9
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +|++++++-=| +....++.+.+|...++|+++|.-+-....+ +.. ..+ ..
T Consensus 71 Aa~~A~GyAr~t-gkp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~---------~~~---~~~----~~ 133 (565)
T 2nxw_A 71 VGFAADAAARYS-STLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEG---------NAG---LLL----HH 133 (565)
T ss_dssp HHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC-----------C---CCC------
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhh---------ccC---cce----ee
Confidence 455677877766 56777766544 4555689999999999999999887432111 000 000 00
Q ss_pred CCCCCC-HHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCC
Q 040733 568 SEIFPD-MLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d-~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~ 616 (643)
.....| ...+.+.+-...+++++++++...+++|+ ..+||+.|+++.|-
T Consensus 134 ~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 187 (565)
T 2nxw_A 134 QGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQSRPVYLEIPRNM 187 (565)
T ss_dssp -----CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred eccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEECChhh
Confidence 012356 78899999889999999888776666655 35799999999664
|
| >4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.31 E-value=0.49 Score=50.64 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=50.3
Q ss_pred HHHhhhcCCEEEEecCccCccccCccc-cccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+...+.+||++|++|+++.-+.-.++- .+..++++|.|+.++..- ...++.+.||+.+++..|.+.|.
T Consensus 387 a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~---~~~Dl~l~G~cdevv~~L~~~LG 455 (492)
T 4iao_A 387 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH---AEFDLSLLGYCDDIAAMVAQKCG 455 (492)
T ss_dssp HHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTT---SCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCC---CCccEEEeCCHHHHHHHHHHHhC
Confidence 345678999999999998644433332 233456788899888652 34699999999999999988764
|
| >2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C* | Back alignment and structure |
|---|
Probab=90.19 E-value=1.8 Score=39.90 Aligned_cols=129 Identities=13% Similarity=0.198 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCch--hhH---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCC-----------
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCL--NSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGM----------- 323 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~--~~~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~----------- 323 (643)
..++++++|..|++.+|+-|+|-. .++ .+|.++.+..|+-|--- -||..-.+-|.
T Consensus 35 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhMNVLLAEA~VP 105 (203)
T 2fsv_C 35 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYA---------IHPVAGRMPGHMNVLLAEANVP 105 (203)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEE---------ECTTCSSSTTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEE---------ecccccCCCCCccEEEEEecCC
Confidence 466788999999999999999865 344 44555555667776221 14432111120
Q ss_pred ----CCcHHHHHhhhcCCEEEEecCccC-------cccc--Cc---cccccCCceEEEEcCCc----ccccC--CC-CCC
Q 040733 324 ----FGTVYANYAVNECDLLLAAGVRFN-------ERMT--SK---LEDFATRAKIVHIDIDS----NEIGK--VK-LPD 380 (643)
Q Consensus 324 ----~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t--~~---~~~~~~~~~iI~Id~d~----~~i~~--~~-~~~ 380 (643)
.--...|.-+.+.|++|+||..-. +..+ .+ ++.|. ..++|.+--.- .-+.. .| +-+
T Consensus 106 Yd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt 184 (203)
T 2fsv_C 106 YDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWK-AGTVLFIKRSMASGYAGVENELFFRNNT 184 (203)
T ss_dssp GGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGGSTTE
T ss_pred HHHHhhHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeecccc-CCEEEEEECCCCCCcCCCcCcceecCCc
Confidence 011345666789999999997521 0011 01 11122 22455442111 11111 11 234
Q ss_pred eeEecCHHHHHHHHHHHH
Q 040733 381 VSICADAKLVFNRMNMIL 398 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l 398 (643)
.-+.||++..++.|...+
T Consensus 185 ~MlfGDAK~~~~~l~~~l 202 (203)
T 2fsv_C 185 MMLFGDAKKMTEQIVQAM 202 (203)
T ss_dssp EEEESCHHHHHHHHHHHC
T ss_pred eEEeccHHHHHHHHHHHh
Confidence 556799999999987653
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=1.5 Score=48.84 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=83.2
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....- ..+.-+|.|.+.+. +++.++++-=| ++...++.|.+|...++|+++|.-+-....+
T Consensus 44 i~~i~~~~E---~~Aa~~A~GyAr~t-gk~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg~~p~~~~---------- 109 (590)
T 1v5e_A 44 VKFLQVKHE---EVGAMAAVMQSKFG-GNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQREL---------- 109 (590)
T ss_dssp CEEEECSSH---HHHHHHHHHHHHTT-CCCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGT----------
T ss_pred CeEEeeCCH---HHHHHHHHHHHHHH-CCCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcCCCCcccC----------
Confidence 455554332 22567888888876 56766666555 5555699999999999999999987653211
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
+.. .....|...+.+.+-...+++++++++.+.+++|+. .+||+.| ++.|-.
T Consensus 110 ----g~~-------~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv~ 166 (590)
T 1v5e_A 110 ----NMD-------AFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDFA 166 (590)
T ss_dssp ----TTT-------CTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTGG
T ss_pred ----CCC-------cccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccchh
Confidence 000 024578899999998889999999988887777664 3489999 888753
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=90.14 E-value=1 Score=49.75 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=82.7
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
.-+++....-.+ +.-+|.|.+.+. +++.++++-=| |....++.+.+|...++|+++|.-+-.... +. .
T Consensus 45 ~i~~i~~~hE~~---Aa~~A~Gyar~t-g~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~~~~~~-----~~--~ 113 (564)
T 2q28_A 45 GIRYIGFRHEQS---AGYAAAASGFLT-QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAI-----VD--L 113 (564)
T ss_dssp TCEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHH-----HH--T
T ss_pred CCcEEeeCCHHH---HHHHHHHHHHHh-CCCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCCCCccc-----cC--C
Confidence 355555433221 455677777665 57777777655 444458899999999999999997754311 00 0
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeC
Q 040733 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVS 615 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~ 615 (643)
+ . + .....|...+.+.+-...+++++++++...+++|+. .+||+.|+++.|
T Consensus 114 ~-----~--~-----~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 114 Q-----Q--G-----DYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp T-----S--C-----CTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred C-----C--C-----ccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 0 0 0 024578999999999999999999888777777653 569999999987
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.98 E-value=1.5 Score=49.57 Aligned_cols=155 Identities=14% Similarity=0.025 Sum_probs=93.3
Q ss_pred CCCcHHHHHHHHHHHCCC--CEEEEccCCCcHHH------HHHHhh-C------C----CeEE-ecCChhHHHHHHHHHH
Q 040733 68 KPRKGADIIVEALERQGV--TTVFAYPGGASIEI------HQSLTR-S------N----IRSI-LPRHEQGGIFAAEGYA 127 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV--~~vFg~PG~~~~~l------~~al~~-~------~----i~~i-~~~hE~~A~~~A~Gya 127 (643)
.++...+++-+.|.+..= ..++++-.+-...- .+.|.+ . + =|++ ...-|++++.+|.|.|
T Consensus 373 ~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA 452 (700)
T 3rim_A 373 KALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGIV 452 (700)
T ss_dssp SCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHHH
Confidence 456777888888877653 45666554321110 011211 1 1 1565 4589999999999999
Q ss_pred HHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHHHhhccceeee-EeCCcCcHH
Q 040733 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVEVTRYMTKHNY-LVLDVDDIP 204 (643)
Q Consensus 128 r~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~ 204 (643)
...|..-++- |..+=..-+.+.+..+...+.||+++....... .|. ..+|.+.+..+++.+..... ...++.++.
T Consensus 453 ~~gG~~Pv~~-tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~g-vG~dG~THq~ied~a~lr~iPnl~V~~Pad~~e~~ 530 (700)
T 3rim_A 453 LHGPTRAYGG-TFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIG-LGEDGPTHQPIEHLSALRAIPRLSVVRPADANETA 530 (700)
T ss_dssp HHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTSCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred HcCCCEEEEE-ecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcc-cCCCCCccCChhHHHHHhcCCCCEEEeCCCHHHHH
Confidence 8855433332 433323335566777778899999875322111 232 24788899999999875332 233444455
Q ss_pred HHHHHHHHHhhcCCC--CeEEEEccc
Q 040733 205 RIIKEAFFIATSGRP--GPVLIDIPV 228 (643)
Q Consensus 205 ~~l~~A~~~A~s~~~--GPV~i~iP~ 228 (643)
.+++ .|...+. |||+|.+|.
T Consensus 531 ~~l~----~Ai~~~~~~~Pv~ir~~r 552 (700)
T 3rim_A 531 YAWR----TILARRNGSGPVGLILTR 552 (700)
T ss_dssp HHHH----HHHTTTTCSSCEEEECCS
T ss_pred HHHH----HHHHccCCCCCEEEEecc
Confidence 4444 4444444 799999886
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=0.72 Score=48.13 Aligned_cols=112 Identities=19% Similarity=0.117 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHh---CCcEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccC--CCCCCccCHHHHhh
Q 040733 117 QGGIFAAEGYARSS---GTPGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLG--TDAFQEIPVVEVTR 188 (643)
Q Consensus 117 ~~A~~~A~Gyar~s---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g--~~~~Q~~d~~~~~~ 188 (643)
..+.-+|.|.|++. +.-.++++..|=|.++. .-++..|..-+.|+|+|.-+....... .......|...+++
T Consensus 145 G~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~ 224 (368)
T 1w85_A 145 GAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAV 224 (368)
T ss_dssp THHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGG
T ss_pred CccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHH
Confidence 34556778888775 22334445567777773 236777888999999998544221110 00111234555666
Q ss_pred ccceeeeEeC--CcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 189 YMTKHNYLVL--DVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 189 ~~tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+--...+|. +++++..++++|+..+.++. ||+.|++-..
T Consensus 225 a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~ 266 (368)
T 1w85_A 225 AAGIPGIQVDGMDPLAVYAAVKAARERAINGE-GPTLIETLCF 266 (368)
T ss_dssp GTTCCEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECC
T ss_pred HCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEee
Confidence 6544455665 57788888889888877664 8999998654
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=89.81 E-value=1.2 Score=50.27 Aligned_cols=114 Identities=15% Similarity=0.040 Sum_probs=72.6
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhC-CcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHH
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSG-TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVV 184 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg-~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~ 184 (643)
|++ ...-|++++.+|.|.|...| +|-+. |..+=..=+-.++..+...+.||+++....... .|.+ .+|.+.+.
T Consensus 428 R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~--tf~~Fs~f~~~air~~al~~lpVv~v~~~~gig-vG~dG~THq~ied~ 504 (690)
T 3m49_A 428 KNIWYGVREFAMGAAMNGIALHGGLKTYGG--TFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIA-VGEDGPTHEPIEQL 504 (690)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE--EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGCCSSHH
T ss_pred ceEEcCchHHHHHHHHHHHHHcCCCEEEEE--ecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCCCCccCCHHHH
Confidence 444 56789999999999999855 44443 333323334445666677899999886322221 2322 47888889
Q ss_pred HHhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 185 EVTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 185 ~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+++.+..... ...++.++..+++. |.....|||+|.+|..
T Consensus 505 a~lr~iPnl~V~~Pad~~E~~~~l~~----Ai~~~~~Pv~ir~~R~ 546 (690)
T 3m49_A 505 AALRAMPNVSVIRPADGNESVAAWRL----ALESTNKPTALVLTRQ 546 (690)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHH----HHHCSSSCEEEECCSS
T ss_pred HHHhcCCCCEEEeeCCHHHHHHHHHH----HHHcCCCCEEEEeecc
Confidence 99999875432 23444455555544 4444469999998863
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=1.7 Score=49.26 Aligned_cols=113 Identities=16% Similarity=0.014 Sum_probs=75.4
Q ss_pred eEEe-cCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHH
Q 040733 109 RSIL-PRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVE 185 (643)
Q Consensus 109 ~~i~-~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~ 185 (643)
|++. ..-|++++.+|.|.|...|..-++. +..+=..-+...|..+...+.||+++....... .|. ..+|.+.+..
T Consensus 449 R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~-~f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~g-vG~dG~THq~~ed~a 526 (711)
T 3uk1_A 449 NHINYGVREFGMSAAINGLVLHGGYKPFGG-TFLTFSDYSRNALRVAALMKVPSIFVFTHDSIG-LGEDGPTHQSVEHVA 526 (711)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSSHHH
T ss_pred cEEEeCccHHHHHHHHHHHHHcCCCEEEEE-EhHHHHHHHHHHHHHhhhcCCCEEEEEECCCcC-cCCCCCccCChhHHH
Confidence 4554 4789999999999997656433433 344433445566666667899999876221111 232 2478888999
Q ss_pred Hhhccceeee-EeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 186 VTRYMTKHNY-LVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 186 ~~~~~tk~~~-~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+++.+..... ...++.++..+++.|++ .+|||+|.+|.
T Consensus 527 ~lr~iPnl~V~~Pad~~E~~~~l~~Ai~-----~~~Pv~ir~~r 565 (711)
T 3uk1_A 527 SLRLIPNLDVWRPADTVETAVAWTYAVA-----HQHPSCLIFSR 565 (711)
T ss_dssp HHHTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEECCS
T ss_pred HHhcCCCCEEEecCCHHHHHHHHHHHHh-----cCCCEEEEeeC
Confidence 9999875333 34566677777777766 35999999885
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=88.91 E-value=1.8 Score=48.15 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=73.5
Q ss_pred chHHHHHHHHhCCCCeEEEEecC-ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGD-GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GD-Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. ++++++++-= -+....++.+.+|...++|+++|.-+-....+ +... .
T Consensus 55 Aa~~A~GyAr~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~---------~~~~---~------- 114 (589)
T 2pgn_A 55 GAWMVNGYNYVK-DRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLA---------GRSE---A------- 114 (589)
T ss_dssp HHHHHHHHHHHH-TSCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEEESCGGGT---------TCTT---C-------
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEecCCccccc---------CCCC---c-------
Confidence 456777877665 4555555433 35555699999999999999999876543211 0000 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
.+..|... .+.+-...+++++++++...+++|+. .+||+.|+++.|-
T Consensus 115 -~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 166 (589)
T 2pgn_A 115 -AQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDL 166 (589)
T ss_dssp -SSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETHH
T ss_pred -ccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHhh
Confidence 23457767 77777788999999998888887763 3589999999873
|
| >3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* | Back alignment and structure |
|---|
Probab=88.71 E-value=0.42 Score=48.09 Aligned_cols=69 Identities=30% Similarity=0.472 Sum_probs=47.5
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+...++++|++|++|+++.-+....+... ...+++|.|+.++..++. ...++.|.+|+.++++. .+.|.
T Consensus 210 a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~-~~~d~~i~g~a~~vl~~-~~~l~ 280 (290)
T 3u31_A 210 AEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITN-KMSDYHVCAKFSELTKV-ANILK 280 (290)
T ss_dssp HHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTT-TTCSEEEESCGGGHHHH-HHHHH
T ss_pred HHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCC-ccceEEEECCHHHHHHH-HHHHh
Confidence 44567899999999999864433332222 245789999998877643 23688999999998763 33443
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=1.9 Score=47.66 Aligned_cols=125 Identities=15% Similarity=0.129 Sum_probs=80.6
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|.|.+.+. + ++++++-=| |....++.+.+|...++|+++|.-+-.....- .
T Consensus 42 i~~i~~~~E~---~Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~--------~ 108 (568)
T 2wvg_A 42 MEQVYCCNEL---NCGFSAEGYARAK-G-AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHA--------A 108 (568)
T ss_dssp SEEEECSSHH---HHHHHHHHHHHHH-S-CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTT--------T
T ss_pred ceEeccCcHH---HHHHHHHHHHHhh-C-CeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCCChhHhc--------c
Confidence 4555543322 2556777877765 3 666666444 44445889999999999999999876542210 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~ 617 (643)
+...+...|. ....|..++.+.+-...+++++++++...+++|+ ...||+.|+++.|-.
T Consensus 109 ~~~~~~~~g~-----~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv~ 171 (568)
T 2wvg_A 109 GHVLHHALGK-----TDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIA 171 (568)
T ss_dssp TCBCTTSCSS-----SCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGGT
T ss_pred Ccceeeeccc-----cchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhHh
Confidence 0000010111 1224789999999999999999988776666554 446999999998754
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=88.52 E-value=1.7 Score=48.06 Aligned_cols=149 Identities=11% Similarity=0.093 Sum_probs=90.1
Q ss_pred HHHHHHHHHH-HCCCCEEEEccCCCcHHHHHHHhhC--CCeEEec---CChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 72 GADIIVEALE-RQGVTTVFAYPGGASIEIHQSLTRS--NIRSILP---RHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 72 ~a~~lv~~L~-~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~---~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
..+.|.+.|. ..+ .++..-|+..+.+...+... +-+++.. -.-..+.-+|.|.+.+.+++.+|++ |=|..
T Consensus 380 ~~~~l~~~l~~~~~--~iv~~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala~~~~vv~i~--GDGsf 455 (568)
T 2c31_A 380 SLGVVRDFMLANPD--ISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIAVE--GDSAF 455 (568)
T ss_dssp HHHHHHHHHHHCCS--SEEEEESSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHHHCSCEEEEE--EHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEECChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhCCCCcEEEEE--cchHh
Confidence 4444555552 222 34444466555554443221 1223321 1122356778888877778777765 44333
Q ss_pred H-HHHHHHHhhhCCCCEEEEeCCCccc--ccCC----CC-----CCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHH
Q 040733 146 N-IMTGLMDAYSDSIPILAITGQVSQK--LLGT----DA-----FQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFI 213 (643)
Q Consensus 146 N-~~~gl~~A~~~~vPvlvItg~~~~~--~~g~----~~-----~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~ 213 (643)
. .+..|..|...+.|+++|.-+.... .... +. .+..|...+.+.+--..+++.+++++.+.+++|+.
T Consensus 456 ~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~- 534 (568)
T 2c31_A 456 GFSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMMEAFGGKGYVANTPAELKAALEEAVA- 534 (568)
T ss_dssp HTTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEESSHHHHHHHHHHHHH-
T ss_pred hccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHh-
Confidence 3 3678999999999998887654431 1100 00 23457788888886667788888888888887764
Q ss_pred hhcCCCCeEEEEcccc
Q 040733 214 ATSGRPGPVLIDIPVD 229 (643)
Q Consensus 214 A~s~~~GPV~i~iP~D 229 (643)
..||+.|++..|
T Consensus 535 ----~~~p~liev~~~ 546 (568)
T 2c31_A 535 ----SGKPCLINAMID 546 (568)
T ss_dssp ----HTSCEEEEEEBC
T ss_pred ----CCCCEEEEEEec
Confidence 248999999876
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=88.51 E-value=0.98 Score=49.52 Aligned_cols=119 Identities=11% Similarity=-0.041 Sum_probs=81.4
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecC-ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGD-GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GD-Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
.-+++....- ..+.-+|.|.+.+. +++.++++-= -+....++.|.+|...++|+++|.-+-....+
T Consensus 38 ~i~~i~~~~E---~~Aa~~A~Gyar~t-g~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~--------- 104 (528)
T 1q6z_A 38 DFRYILALQE---ACVVGIADGYAQAS-RKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMI--------- 104 (528)
T ss_dssp TCEEEECSSH---HHHHHHHHHHHHHH-TSCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHH---------
T ss_pred cCcEEEECcH---HHHHHHHHHHHHHh-CCCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCccccc---------
Confidence 3556654432 22566788887776 5666665543 34555689999999999999999876543110
Q ss_pred cccccccccCCCCCCCCCC-CCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCCC
Q 040733 553 EANRANSFLGDPLRKSEIF-PDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSYQ 617 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~-~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~~ 617 (643)
+.. . ... .|...+.+.+-....++++++++...+++|+. .+||+.|+++.|-.
T Consensus 105 ~~~----~--------~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~~ 163 (528)
T 1q6z_A 105 GVE----A--------LLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDW 163 (528)
T ss_dssp TTT----C--------TTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGGT
T ss_pred CCC----c--------ccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhh
Confidence 000 0 123 58888888888888999999888777777653 46899999998754
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=88.20 E-value=1.6 Score=48.34 Aligned_cols=125 Identities=17% Similarity=0.127 Sum_probs=80.1
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....- ..+.-+|.|.+.+.. +.++++-=| |....++.|.+|...++|+++|.-+-....+- .
T Consensus 42 i~~v~~~~E---~~Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~--------~ 108 (566)
T 2vbi_A 42 MKQIYCCNE---LNCGFSAEGYARSNG--AAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQG--------T 108 (566)
T ss_dssp SEEEECSSH---HHHHHHHHHHHHHHS--CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTT--------T
T ss_pred CeEEeeCcH---HHHHHHHHHHHhhcC--CeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCCChHHhc--------c
Confidence 455554332 225667788777763 556555433 34445899999999999999999876532210 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQ 617 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~ 617 (643)
+...+...|. ....|...+.+.+-...+++++++++...+++|+ ...||+.|+++.|-.
T Consensus 109 ~~~~~~~~g~-----~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d~~ 171 (566)
T 2vbi_A 109 GHILHHTIGK-----TDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNIA 171 (566)
T ss_dssp TCBCTTSCSS-----SCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHTCCEEEEEETTTT
T ss_pred CceeeeeccC-----cchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhhc
Confidence 0000000111 1224789999999888999999887666666554 446999999998864
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=88.14 E-value=2.2 Score=47.03 Aligned_cols=114 Identities=19% Similarity=0.121 Sum_probs=72.3
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. + +.++++-=| |....++.+.+|...++|+++|.-+-.... +. .+ ...+...|.
T Consensus 54 Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~~Pll~itg~~~~~~-----~~--~~-~~~~~~~g~---- 119 (563)
T 2vk8_A 54 AAYAADGYARIK-G-MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISA-----QA--KQ-LLLHHTLGN---- 119 (563)
T ss_dssp HHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEECCHHH-----HH--TT-CCCTTSCSS----
T ss_pred HHHHHHHHHHhh-C-CcEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEECCCChHH-----hh--cc-cccccccCC----
Confidence 456777877665 3 455554333 444458899999999999999997644211 11 01 111111111
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHH----HHhCCCcEEEEEEeCCC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL----MLETPGPYLLDVMVSYQ 617 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~----al~~~gp~lIeV~v~~~ 617 (643)
...-|+.++.+.+-...+++++++++.+.+++ +....||+.|+++.|-.
T Consensus 120 -~~~q~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d~~ 172 (563)
T 2vk8_A 120 -GDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLV 172 (563)
T ss_dssp -SCSSHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHHTSCEEEEEETTGG
T ss_pred -cchHHHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhhh
Confidence 11126788999998888999997665555554 44446999999998753
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=88.07 E-value=0.94 Score=50.31 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=71.6
Q ss_pred chHHHHHHHHhCCCCeEEEEecCc-cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDG-SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRK 567 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~ 567 (643)
+.-+|.|.+.+. +++.||++==| |..-.+..+.+|...++|+++|.-+-...- . +. +
T Consensus 61 Aa~aAdGyAr~t-G~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~p~~~-~-------------g~--~----- 118 (578)
T 3lq1_A 61 AGFFALGLAKAS-KRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHEL-R-------------NV--G----- 118 (578)
T ss_dssp HHHHHHHHHHHH-CCCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGG-T-------------TS--S-----
T ss_pred HHHHHHHHHHhh-CCCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHh-h-------------cC--C-----
Confidence 445777877776 56777766544 455568999999999999999987533210 0 00 0
Q ss_pred CCCCCCHHHHHhHCCCCEEEeCChhHH-----------HHHHHHHHh-CCCcEEEEEEeC
Q 040733 568 SEIFPDMLKFAEACGIPAARVTKKKDV-----------RAAIQLMLE-TPGPYLLDVMVS 615 (643)
Q Consensus 568 ~~~~~d~~~lA~a~G~~~~~V~~~~eL-----------~~al~~al~-~~gp~lIeV~v~ 615 (643)
.....|..++.+.+-...+++++++++ ++|++.|.. .+||+.|+++.|
T Consensus 119 ~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 119 APQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp CTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECC
T ss_pred CCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccC
Confidence 124568888888888888899887653 344444443 479999999986
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=87.49 E-value=2.2 Score=46.86 Aligned_cols=123 Identities=17% Similarity=0.121 Sum_probs=75.2
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....-. .+.-+|.|.+.+. + +.++++ ---+....++.+.+|...++|+++|.-+-...- +. .+
T Consensus 44 i~~i~~~~E~---~A~~~A~Gyar~t-g-~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~p~~~-----~~--~~ 111 (552)
T 1ovm_A 44 ICWVGCANEL---NASYAADGYARCK-G-FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAA-----QQ--RG 111 (552)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHH-S-CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHH-----HH--HT
T ss_pred ceEEeeCcHH---HHHHHHHHHHHhh-C-CcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCCCHHH-----Hh--cc
Confidence 4555543321 2566778877776 3 444444 333455568999999999999999998754311 11 01
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHH----HHHHHHHHhCCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDV----RAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL----~~al~~al~~~gp~lIeV~v~~ 616 (643)
. ..+..+|. ...-|+.++.+.+-...+++++ +++ +++++.+....||+.|+++.|-
T Consensus 112 ~-~~~~~~g~-----~~~q~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~~~GPV~l~iP~d~ 171 (552)
T 1ovm_A 112 E-LLHHTLGD-----GEFRHFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLRERRPGYLMLPADV 171 (552)
T ss_dssp C-CCTTSCSS-----SCCSHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHTCCEEEEEEHHH
T ss_pred c-ccccccCC-----CcHHHHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHhCCCCEEEEeehhh
Confidence 1 11111111 1112577888888888899988 555 4555555544699999999863
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=87.22 E-value=0.8 Score=48.44 Aligned_cols=110 Identities=20% Similarity=0.055 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHh---CCcEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCC--CCC-CccCHHHHhhc
Q 040733 119 GIFAAEGYARSS---GTPGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGT--DAF-QEIPVVEVTRY 189 (643)
Q Consensus 119 A~~~A~Gyar~s---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~-Q~~d~~~~~~~ 189 (643)
+.-+|.|.|++. +.-.++++..|=|.++- .-++..|..-++|+|+|.-+........ ... -..|...+++.
T Consensus 186 ~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a 265 (407)
T 1qs0_A 186 QFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVG 265 (407)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHH
T ss_pred chhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHH
Confidence 445777777764 22234444456666653 4578888889999888874332111100 001 12344555665
Q ss_pred cceeeeEeC--CcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 190 MTKHNYLVL--DVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 190 ~tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+--...+|. +++++..++++|+..++.+. ||+.|++-..
T Consensus 266 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 306 (407)
T 1qs0_A 266 CGIASLRVDGNDFVAVYAASRWAAERARRGL-GPSLIEWVTY 306 (407)
T ss_dssp TTCEEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECC
T ss_pred cCCeEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEee
Confidence 544555664 56678888889888877654 8999998654
|
| >2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A* | Back alignment and structure |
|---|
Probab=85.24 E-value=1.8 Score=49.35 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHhCC-----CcEEEE-cCCch--hhHHHHHHHHH-HhCCceeecCCCCCCCCCCCCCccc---ccCCC
Q 040733 257 DELALRQTLKLIVESK-----NPVLCV-GGGCL--NSSEELRKFVG-LTGIPVTCTTMGLGLFPCTDELCLR---MVGMF 324 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak-----rPvIl~-G~g~~--~~~~~l~~lae-~lg~PV~tt~~gkg~~~~~hpl~lG---~~g~~ 324 (643)
-+++++.+++.|++.+ .-+.+. |.+.. .....+.+|++ .+|.+-+.+...... .+...+ ++|..
T Consensus 80 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~----~~~~~~~~~~~G~~ 155 (715)
T 2iv2_X 80 WDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXH----GPSVAGLHQSVGNG 155 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSC----CSSSCSHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccch----hHHHHHHHhhcCCC
Confidence 4778888888887642 234444 44443 23345788998 899875543221111 111111 12211
Q ss_pred CcHHHHHhhhcCCEEEEecCccCcccc---Cccc-cccCCceEEEEcCCcccccCCCCCCeeEe----cCHHHHHHHHHH
Q 040733 325 GTVYANYAVNECDLLLAAGVRFNERMT---SKLE-DFATRAKIVHIDIDSNEIGKVKLPDVSIC----ADAKLVFNRMNM 396 (643)
Q Consensus 325 ~~~~~~~~l~~aDlvL~vG~~~~~~~t---~~~~-~~~~~~~iI~Id~d~~~i~~~~~~~~~i~----~D~~~~L~~L~~ 396 (643)
.......-++++|+||++|+.+.+... ..+. .....+|+|.||+........ ++..+. .|.. ++.+|..
T Consensus 156 ~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~--Ad~~l~irPGtD~a-L~~al~~ 232 (715)
T 2iv2_X 156 AMSNAINEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARI--ADMHIALKNGSNIA-LLNAMGH 232 (715)
T ss_dssp SCSSCGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHT--CSEEECCCTTCHHH-HHHHHHH
T ss_pred CCCCCHhHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHh--hCEEeccCCCcHHH-HHHHHHH
Confidence 000012346899999999988632211 1111 112457999999887766543 344333 3444 4444444
Q ss_pred HHh
Q 040733 397 ILE 399 (643)
Q Consensus 397 ~l~ 399 (643)
.+-
T Consensus 233 ~ii 235 (715)
T 2iv2_X 233 VII 235 (715)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=85.06 E-value=1 Score=46.89 Aligned_cols=107 Identities=21% Similarity=0.213 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHh---CCcEEEEEccchhhHHH---HHHHHHhhhCCCCEEEEeCCCcccccCCC-C--CCccCHHHHhhc
Q 040733 119 GIFAAEGYARSS---GTPGVCLVSSGPGVTNI---MTGLMDAYSDSIPILAITGQVSQKLLGTD-A--FQEIPVVEVTRY 189 (643)
Q Consensus 119 A~~~A~Gyar~s---g~~gv~~~t~GpG~~N~---~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~--~Q~~d~~~~~~~ 189 (643)
+.-+|.|.|++. |.-.++++..|=|+++- .-++..|...+.|+|+|.-+.. ..++.. . ....|... +.
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~-~g~~t~~~~~~~~~~~~~--ra 221 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR-YGMGTSVERAAASTDYYK--RG 221 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECS-EETTEEHHHHCSCCCGGG--TT
T ss_pred hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCC-cccCCCcccccCCCCHHH--Hh
Confidence 445677777664 22344444557777663 4478888889999999984331 111110 0 00111111 11
Q ss_pred cceeeeEeC--CcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 190 MTKHNYLVL--DVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 190 ~tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+--...+|. +++++..++++|+..+..+. ||+.|++-..
T Consensus 222 ~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~ 262 (365)
T 2ozl_A 222 DFIPGLRVDGMDILCVREATRFAAAYCRSGK-GPILMELQTY 262 (365)
T ss_dssp TTSCEEEEETTCHHHHHHHHHHHHHHHHTTC-CCEEEEEECC
T ss_pred CCCCEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCEEEEEEee
Confidence 111234454 67888888999988887765 9999998654
|
| >1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4 | Back alignment and structure |
|---|
Probab=85.06 E-value=1.5 Score=39.72 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCch--hhH---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCC-----------
Q 040733 260 ALRQTLKLIVESKNPVLCVGGGCL--NSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGM----------- 323 (643)
Q Consensus 260 ~i~~~~~~L~~AkrPvIl~G~g~~--~~~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~----------- 323 (643)
..++++++|..|++.+|+-|+|-. .++ .++.++.+.-|+-|--- -||-.--+-|.
T Consensus 11 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~fa---------IHPVAGRMPGhMNVLLAEA~VP 81 (184)
T 1d4o_A 11 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFG---------IHPVAGRMPGQLNVLLAEAGVP 81 (184)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEE---------ECTTCSSSTTHHHHHHHHHTCC
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEE---------eccccccCCCcceEEEEEecCC
Confidence 467788999999999999999865 444 44555555567766221 14432111120
Q ss_pred ----CCcHHHHHhhhcCCEEEEecCccC-------cccc--Cc---cccccCCceEEEEcCC--c--ccccC--CC-CCC
Q 040733 324 ----FGTVYANYAVNECDLLLAAGVRFN-------ERMT--SK---LEDFATRAKIVHIDID--S--NEIGK--VK-LPD 380 (643)
Q Consensus 324 ----~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t--~~---~~~~~~~~~iI~Id~d--~--~~i~~--~~-~~~ 380 (643)
.-....|.-+.+.|++|++|..-. +..+ .+ ++.|.. .++|.+--. + .-+.. .| +-+
T Consensus 82 Yd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kA-k~ViV~KRsm~~GyAgv~NpLF~~~nt 160 (184)
T 1d4o_A 82 YDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKS-KQVIVMKRSLGVGYAAVDNPIFYKPNT 160 (184)
T ss_dssp GGGEEEHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGS-SCEEEEESSSCCCTTCCCCGGGGSTTE
T ss_pred HHHHHhHHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhhC-CEEEEEECCCCCCcCCCcCcceecCCc
Confidence 011345667789999999997521 0001 01 112222 245544211 1 11111 11 234
Q ss_pred eeEecCHHHHHHHHHHHHhh
Q 040733 381 VSICADAKLVFNRMNMILES 400 (643)
Q Consensus 381 ~~i~~D~~~~L~~L~~~l~~ 400 (643)
.-+.||++..++.|...++.
T Consensus 161 ~MlfGDAK~~~~~l~~~l~~ 180 (184)
T 1d4o_A 161 AMLLGDAKKTCDALQAKVRE 180 (184)
T ss_dssp EEEESCHHHHHHHHHHHHHT
T ss_pred eEEeccHHHHHHHHHHHHHH
Confidence 55679999999999887764
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=82.14 E-value=1.4 Score=46.38 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=59.5
Q ss_pred chHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCC
Q 040733 489 GLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKS 568 (643)
Q Consensus 489 glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~ 568 (643)
++.+|+|++++. .|.++...|.|-.+| ...|.++...++|+++++.+..+.+.-...+ . +
T Consensus 76 a~~~a~Gaa~aG-~r~~~~ts~~G~~~~-~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~----------~--------~ 135 (395)
T 1yd7_A 76 SIAAAIGASWAG-AKAMTATSGPGFSLM-QENIGYAVMTETPVVIVDVQRSGPSTGQPTL----------P--------A 135 (395)
T ss_dssp HHHHHHHHHHTT-CCEEEEEETTHHHHH-TTTCC----CCCCEEEEEEC-------------------------------
T ss_pred HHHHHHHHHHhC-CcEEEEeCchHHHHH-HHHHHHHHhcCCCEEEEEeeCCCCCCCCCcc----------c--------c
Confidence 688899999886 567777778886654 3446677788999999988776543110000 0 0
Q ss_pred CCCCCHHHHHh--HCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEE
Q 040733 569 EIFPDMLKFAE--ACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDV 612 (643)
Q Consensus 569 ~~~~d~~~lA~--a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV 612 (643)
....-...++. .+|+..+...+++|..+.+.+|+ ..+.|+++..
T Consensus 136 ~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~ 185 (395)
T 1yd7_A 136 QGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLT 185 (395)
T ss_dssp -------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred hhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEc
Confidence 00000112222 35788888899999988888877 4568988765
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=82.04 E-value=4.1 Score=44.92 Aligned_cols=123 Identities=16% Similarity=0.112 Sum_probs=76.5
Q ss_pred CeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 475 RQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 475 ~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
-+++....- ..+.-+|.|.+.+. + +.++++ -.-+....++.+.+|...++|+++|.-+..... +.. +
T Consensus 64 i~~i~~~~E---~~A~~~A~GyAr~t-G-~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~~~~~-----~~~--~ 131 (570)
T 2vbf_A 64 MKWIGNANE---LNASYMADGYARTK-K-AAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKV-----QND--G 131 (570)
T ss_dssp CEEEECSSH---HHHHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEECCHHH-----HHH--T
T ss_pred CeEECcCcH---HHHHHHHHHHHHHh-C-CeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCCCHHH-----hhc--c
Confidence 455554332 22566788877665 3 555544 444555568999999999999999997765321 110 1
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSY 616 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~ 616 (643)
....+. .++ ....|+..+.+.+-...+++++ +++...+++++ ...||+.|+++.|-
T Consensus 132 ~~~~~~-~~~-----~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d~ 191 (570)
T 2vbf_A 132 KFVHHT-LAD-----GDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKERKPVYINLPVDV 191 (570)
T ss_dssp CCCTTS-CSS-----SCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_pred ccceee-ccc-----cchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCCCCEEEEcchhh
Confidence 111111 110 1122467888888888899988 77666666544 45699999999864
|
| >3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3* | Back alignment and structure |
|---|
Probab=81.93 E-value=2.9 Score=48.13 Aligned_cols=125 Identities=11% Similarity=0.030 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhCC--CcEEEEcCCch-hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhh
Q 040733 257 DELALRQTLKLIVESK--NPVLCVGGGCL-NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333 (643)
Q Consensus 257 ~~~~i~~~~~~L~~Ak--rPvIl~G~g~~-~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l 333 (643)
-+++++.+++.|++.+ +..++.|.... ...-.+.+|++.+|.+.+... ++.. +.. . +..+... .-+
T Consensus 322 WdeAl~~ia~~L~~i~~~~i~~~~s~~~t~E~~~~~~kl~~~lGt~n~d~~-~~~~----~~~-~---~~~~~~~--~di 390 (783)
T 3i9v_3 322 WEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQ-GRTA----APA-S---LFPPASL--EDL 390 (783)
T ss_dssp HHHHHHHHHHHHHTCCTTSEEEEECTTCCTTHHHHHHHHHHHTTCSCEEET-TCCS----SCG-G---GSCBCCH--HHH
T ss_pred HHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHHHHHHHHHhCCCcccCC-chhh----hhh-c---cCCCCCH--HHH
Confidence 4788999999998865 45555655444 445568899999998766433 1111 000 1 1111111 236
Q ss_pred hcCCEEEEecCccCcccc---Cccccc--------------------------cCCceEEEEcCCcccccCCCCCCeeEe
Q 040733 334 NECDLLLAAGVRFNERMT---SKLEDF--------------------------ATRAKIVHIDIDSNEIGKVKLPDVSIC 384 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t---~~~~~~--------------------------~~~~~iI~Id~d~~~i~~~~~~~~~i~ 384 (643)
+++|+||++| .+.+... .++..+ ....|+|.||+....+.+ .++..+.
T Consensus 391 ~~ad~Il~~G-Np~~~~P~~~~rlr~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~--~Ad~~l~ 467 (783)
T 3i9v_3 391 LQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMK--WAAIHEV 467 (783)
T ss_dssp HHCSCEEEES-CHHHHSTHHHHHHHHHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGT--TCSEEEE
T ss_pred hhCCEEEEeC-ChhHhCcHHHHHHHHHHHhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhH--hhcceEe
Confidence 7999999999 7532110 011000 245689999998887765 3444443
Q ss_pred ---cCHHHHHHHHH
Q 040733 385 ---ADAKLVFNRMN 395 (643)
Q Consensus 385 ---~D~~~~L~~L~ 395 (643)
++-.+++.+|.
T Consensus 468 i~PGtD~all~al~ 481 (783)
T 3i9v_3 468 HRPGEEREILLALL 481 (783)
T ss_dssp CCSSCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHH
Confidence 33334444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 643 | ||||
| d1ybha2 | 195 | c.36.1.5 (A:86-280) Acetohydroxyacid synthase cata | 2e-64 | |
| d1ybha3 | 208 | c.36.1.9 (A:460-667) Acetohydroxyacid synthase cat | 6e-53 | |
| d1t9ba2 | 175 | c.36.1.5 (A:89-263) Acetohydroxyacid synthase cata | 1e-49 | |
| d1ybha1 | 179 | c.31.1.3 (A:281-459) Acetohydroxyacid synthase cat | 4e-46 | |
| d1t9ba3 | 227 | c.36.1.9 (A:461-687) Acetohydroxyacid synthase cat | 4e-36 | |
| d1ytla1 | 158 | c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synth | 6e-34 | |
| d1ozha2 | 181 | c.36.1.5 (A:7-187) Catabolic acetolactate synthase | 1e-31 | |
| d1zpda3 | 204 | c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymom | 2e-30 | |
| d1pvda2 | 180 | c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's | 4e-29 | |
| d1ovma2 | 178 | c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase | 5e-29 | |
| d2ez9a2 | 174 | c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus | 5e-29 | |
| d2ihta3 | 198 | c.36.1.9 (A:375-572) Carboxyethylarginine synthase | 6e-29 | |
| d2djia2 | 184 | c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus vi | 5e-28 | |
| d1zpda2 | 186 | c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomon | 4e-27 | |
| d1q6za2 | 180 | c.36.1.5 (A:2-181) Benzoylformate decarboxylase {P | 9e-27 | |
| d1ozha3 | 192 | c.36.1.9 (A:367-558) Catabolic acetolactate syntha | 1e-26 | |
| d2ji7a2 | 188 | c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalo | 2e-26 | |
| d1t9ba1 | 171 | c.31.1.3 (A:290-460) Acetohydroxyacid synthase cat | 1e-25 | |
| d1pvda1 | 179 | c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker | 3e-25 | |
| d2djia3 | 229 | c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus | 8e-25 | |
| d2ihta2 | 186 | c.36.1.5 (A:12-197) Carboxyethylarginine synthase | 1e-24 | |
| d2ihta1 | 177 | c.31.1.3 (A:198-374) Carboxyethylarginine synthase | 1e-24 | |
| d2ji7a3 | 183 | c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxa | 2e-24 | |
| d1ovma3 | 196 | c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxyla | 3e-24 | |
| d1ovma1 | 161 | c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxyla | 6e-24 | |
| d1q6za3 | 183 | c.36.1.9 (A:342-524) Benzoylformate decarboxylase | 6e-24 | |
| d1pvda3 | 196 | c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker | 2e-23 | |
| d1ozha1 | 179 | c.31.1.3 (A:188-366) Catabolic acetolactate syntha | 6e-23 | |
| d1zpda1 | 175 | c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymom | 1e-22 | |
| d2ez9a3 | 228 | c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacill | 2e-22 | |
| d1q6za1 | 160 | c.31.1.3 (A:182-341) Benzoylformate decarboxylase | 2e-20 | |
| d2djia1 | 177 | c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus | 2e-19 | |
| d2ez9a1 | 183 | c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacill | 2e-18 | |
| d2ji7a1 | 175 | c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxa | 2e-16 |
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 208 bits (531), Expect = 2e-64
Identities = 139/194 (71%), Positives = 174/194 (89%), Gaps = 1/194 (0%)
Query: 60 FSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQG 118
F SRFAPD+PRKGADI+VEALERQGV TVFAYPGGAS+EIHQ+LTRS+ IR++LPRHEQG
Sbjct: 2 FISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQG 61
Query: 119 GIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAF 178
G+FAAEGYARSSG PG+C+ +SGPG TN+++GL DA DS+P++AITGQV ++++GTDAF
Sbjct: 62 GVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAF 121
Query: 179 QEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPN 238
QE P+VEVTR +TKHNYLV+DV+DIPRII+EAFF+ATSGRPGPVL+D+P D+Q +LA+PN
Sbjct: 122 QETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPN 181
Query: 239 WNQPCKLPSCISSL 252
W Q +LP +S +
Sbjct: 182 WEQAMRLPGYMSRM 195
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 178 bits (453), Expect = 6e-53
Identities = 147/209 (70%), Positives = 179/209 (85%), Gaps = 1/209 (0%)
Query: 432 EEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLP 491
E IPPQYAI++L+ELTD + IISTGVGQHQMWA QFY YK+ RQ L+S G G+MGFGLP
Sbjct: 1 EAIPPQYAIKVLDELTDGK-AIISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLP 59
Query: 492 AAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRY 551
AA+GA+VANP AIVVDIDGDGSFIMN+QELA I+ EN+PVK+LL+NNQ+LGM +++EDR+
Sbjct: 60 AAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRF 119
Query: 552 FEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLD 611
++ANRA++FLGDP ++ EIFP+ML FA ACGIPAARVTKK D+R AIQ ML+TPGPYLLD
Sbjct: 120 YKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLDTPGPYLLD 179
Query: 612 VMVSYQEHVVPMIPYDKSFKDTILEDDGR 640
V+ +QEHV+PMIP +F D I E DGR
Sbjct: 180 VICPHQEHVLPMIPSGGTFNDVITEGDGR 208
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 168 bits (426), Expect = 1e-49
Identities = 85/163 (52%), Positives = 112/163 (68%), Gaps = 1/163 (0%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNI-RSILPRHEQGGIFAAEGYARSS 130
G I E + RQ V TVF YPGGA + ++ ++ S+ +LP+HEQG AEGYAR+S
Sbjct: 6 GGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARAS 65
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYM 190
G PGV LV+SGPG TN++T + DA++D IP++ TGQV +GTDAFQE VV ++R
Sbjct: 66 GKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSC 125
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLE 233
TK N +V V+++P I EAF IATSGRPGPVL+D+P DV
Sbjct: 126 TKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAA 168
|
| >d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 158 bits (401), Expect = 4e-46
Identities = 113/179 (63%), Positives = 133/179 (74%)
Query: 253 PKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPC 312
PK P++ L Q ++LI ESK PVL VGGGCLNSS+EL +FV LTGIPV T MGLG +PC
Sbjct: 1 PKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGIPVASTLMGLGSYPC 60
Query: 313 TDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNE 372
DEL L M+GM GTVYANYAV DLLLA GVRF++R+T KLE FA+RAKIVHIDIDS E
Sbjct: 61 DDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAE 120
Query: 373 IGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYKTFG 431
IGK K P VS+C D KL MN +LE++ DF WR EL+ QK+K+P S+KTFG
Sbjct: 121 IGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKTFG 179
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 133 bits (334), Expect = 4e-36
Identities = 81/216 (37%), Positives = 130/216 (60%), Gaps = 10/216 (4%)
Query: 425 FSYKTFGEEIPPQYAIQILNELTDD--EETIISTGVGQHQMWAIQFYMYKRARQLLTSSG 482
+ +T G +I PQ I+ L+++ +D I++TGVGQHQMWA Q + ++ +TS G
Sbjct: 2 YMEETPGSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGG 61
Query: 483 FGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLG 542
G+MG+GLPAA+GA VA P ++V+DIDGD SF M L EL++ PVKIL++NN+ G
Sbjct: 62 LGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQG 121
Query: 543 MNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML 602
M +++ ++E +++ ++ PD +K AEA G+ RV K++++ A ++ +
Sbjct: 122 MVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFV 173
Query: 603 ETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDD 638
T GP LL+V V + V+PM+ + I D
Sbjct: 174 STKGPVLLEVEVDKKVPVLPMVAGGSGLDEFINFDP 209
|
| >d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: ACDE2-like domain: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 124 bits (313), Expect = 6e-34
Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 13/151 (8%)
Query: 260 ALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT------MGLGLFPCT 313
+ +I ++K P+L VG + E K I V T + GL
Sbjct: 8 KGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGEKV 67
Query: 314 DELCLRMVGMFGTVYANYAV---NECDLLLAAGVRF--NERMTSKLEDFATRAKIVHIDI 368
+ L + F DL+L G + +M + +++FA + + ID
Sbjct: 68 NYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDR 127
Query: 369 DSNEIGKVKLPDVSICADAKLVFNRMNMILE 399
+ + + + + ++ IL
Sbjct: 128 YYHPNADMSFGN--LWKKEEDYLKLLDEILA 156
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Score = 119 bits (298), Expect = 1e-31
Identities = 59/164 (35%), Positives = 85/164 (51%)
Query: 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYA 127
+ GAD++V LE QGV VF PG ++ SL S+IR I RHE F A
Sbjct: 3 QWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVG 62
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT 187
R +G GV LV+SGPG +N++TG+ A S+ P++A+ G V + Q + V +
Sbjct: 63 RITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMF 122
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQ 231
+TK+ V D + ++ AF A GRPG + +P DV
Sbjct: 123 SPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVV 166
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Score = 116 bits (291), Expect = 2e-30
Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 8/206 (3%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
+ + + L T + G A Q ++ +G +G+ +PAA
Sbjct: 3 LVNAEIARQVEALLTPN-TTVIAETGDSWFNA-QRMKLPNGARVEYEMQWGHIGWSVPAA 60
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
G AV P + + GDGSF + QE+A + +PV I LINN + V D +
Sbjct: 61 FGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYN 120
Query: 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAI-QLMLETPGPYLLDV 612
+ + G + ++ + ++ AI + T GP L++
Sbjct: 121 NIKNWDYAGLM-----EVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALANTDGPTLIEC 175
Query: 613 MVSYQEHVVPMIPYDKSFKDTILEDD 638
+ ++ ++ + K
Sbjct: 176 FIGREDCTEELVKWGKRVAAANSRKP 201
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 111 bits (279), Expect = 4e-29
Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 10/175 (5%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSS 130
+ E L++ V TVF PG ++ + + + A
Sbjct: 4 TLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARI 63
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE--------IP 182
+ + G G + + G+ +Y++ + +L + G S
Sbjct: 64 KGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTV 123
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVP 237
++ +++ ++ D+ P I PV + +P ++ +L VP
Sbjct: 124 FHRMSANISETTAMITDIATAPAEIDRCIRTT-YVTQRPVYLGLPANLV-DLNVP 176
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Score = 111 bits (278), Expect = 5e-29
Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 12/178 (6%)
Query: 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYA 127
P AD +++ L G +F PG +++ + S I + +E +AA+GYA
Sbjct: 2 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYA 61
Query: 128 RSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE------- 180
R G + + G G + M G+ +Y++ +P+L I G
Sbjct: 62 RCKGFAALL-TTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGE 120
Query: 181 -IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVP 237
++ +T ++ + + I + + RPG + +P DV + A P
Sbjct: 121 FRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGY--LMLPADVAKKAATP 176
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Score = 111 bits (277), Expect = 5e-29
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
Query: 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR--SNIRSILPRHEQGGIFAAEGYAR 128
+++ LE GV ++ PGG+ I +L+ I I RHE+ G AA A+
Sbjct: 4 LAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAK 63
Query: 129 SSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTR 188
+G GVC S+GPG T++M GL DA D +P+LA+ GQ + D FQE+ +
Sbjct: 64 LTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYA 123
Query: 189 YMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQL-ELAVPNW 239
+ +N ++ +P +I EA A G ++ IPVD+ ++ +W
Sbjct: 124 DVADYNVTAVNAATLPHVIDEAIRRAY-AHQGVAVVQIPVDLPWQQIPAEDW 174
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Score = 111 bits (279), Expect = 6e-29
Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 16/202 (7%)
Query: 428 KTFGEEIPPQYAIQILNELTDD----EETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
+T+ + + I +N + ++ E I + +G + + + F + LTS+G
Sbjct: 2 ETYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGC 61
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
S G+G+PAA+GA +A P I GDG F N +L I N+P+ +++NN G+
Sbjct: 62 SSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGL 121
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603
Y++ + + D + AEA G+ A R T ++++ AA++ E
Sbjct: 122 IELYQNIGHHRSHDPAVKFGG-------VDFVALAEANGVDATRATNREELLAALRKGAE 174
Query: 604 TPGPYLLDVMVSYQEHVVPMIP 625
P+L++V V+Y P
Sbjct: 175 LGRPFLIEVPVNY-----DFQP 191
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Score = 108 bits (271), Expect = 5e-28
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 67 DKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR--SNIRSILPRHEQGGIFAAE 124
D +++ LE G T++ P G + ++ +N++ + +HE+ G AA
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAV 60
Query: 125 GYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVV 184
++ G GV + S GPG ++++ GL DA D+IP++AI G Q+ L DAFQE+
Sbjct: 61 MQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQN 120
Query: 185 EVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLE 233
+ ++ +N V + +P+++ EA +A + R G ++++P D
Sbjct: 121 PMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKV 168
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Score = 106 bits (265), Expect = 4e-27
Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 19/193 (9%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSS 130
+ E L + G+ FA G ++ + +L + + + +E F+AEGYAR+
Sbjct: 4 VGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAK 63
Query: 131 GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE--------IP 182
G V+ G + + AY++++P++ I+G +
Sbjct: 64 GAAAAV-VTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 122
Query: 183 VVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
+E+ + +T + ++ P I A + PV ++I ++ + P
Sbjct: 123 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK-KPVYLEIACNIA--------SMP 173
Query: 243 CKLPSCISSLPKE 255
C P S+L +
Sbjct: 174 CAAPGPASALFND 186
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Score = 105 bits (261), Expect = 9e-27
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 2/166 (1%)
Query: 73 ADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGT 132
E L RQG+ TVF PG ++ + + R IL E + A+GYA++S
Sbjct: 4 HGTTYELLRRQGIDTVFGNPGSNALPFLKDF-PEDFRYILALQEACVVGIADGYAQASRK 62
Query: 133 PGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQ-EIPVVEVTRYMT 191
P + S G N M L +A++ P++ GQ ++ ++G +A + + R +
Sbjct: 63 PAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLV 122
Query: 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVP 237
K +Y ++P + A +A+ GPV + +P D + A P
Sbjct: 123 KWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADP 168
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Score = 105 bits (261), Expect = 1e-26
Identities = 41/190 (21%), Positives = 85/190 (44%), Gaps = 10/190 (5%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
+ P ++ + ++ + + ++ +G +W ++ RARQ++ S+G +MG LP A
Sbjct: 5 LHPLRIVRAMQDIVNSD-VTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWA 63
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
+GA + NP VV + GDG F+ + EL V L+ + M E++ ++
Sbjct: 64 IGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQ 123
Query: 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDVM 613
F D +AE+ G V + + ++ ++ GP ++ +
Sbjct: 124 RLSGVEFGP---------MDFKAYAESFGAKGFAVESAEALEPTLRAAMDVDGPAVVAIP 174
Query: 614 VSYQEHVVPM 623
V Y+++ + M
Sbjct: 175 VDYRDNPLLM 184
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Score = 104 bits (259), Expect = 2e-26
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 2/166 (1%)
Query: 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARS 129
G ++++AL+ + T++ G + + R RHEQ +AA
Sbjct: 4 TDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYI 63
Query: 130 SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL--LGTDAFQEIPVVEVT 187
G PGVCL S PG N +T L A ++ P++ ++G +++ L ++E+ + V
Sbjct: 64 EGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVA 123
Query: 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLE 233
R K ++ + + DIP I A A SGRPG V +D+P + +
Sbjct: 124 RPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQ 169
|
| >d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 101 bits (252), Expect = 1e-25
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 263 QTLKLIVESKNPVLCVGGGCLNSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLR 319
+ LI +K PVL VG G LN + L++ IPVT T GLG F D L
Sbjct: 2 KAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLD 61
Query: 320 MVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAK---------IVHIDIDS 370
M+GM G AN AV DL++A G RF++R+T + FA A+ I+H ++
Sbjct: 62 MLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSP 121
Query: 371 NEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPF 425
I KV +++ DA +M + + S W ++++ KK+YP+
Sbjct: 122 KNINKVVQTQIAVEGDATTNLGKMMSKIFPVK-----ERSEWFAQINKWKKEYPY 171
|
| >d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 101 bits (251), Expect = 3e-25
Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 3/152 (1%)
Query: 253 PKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGLF 310
E ++ + L L+ ++KNPV+ C E +K + LT P T MG G
Sbjct: 12 DAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSI 71
Query: 311 PCTDELCLRMVG-MFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDID 369
+ AV DL+L+ G ++ T IV D
Sbjct: 72 SEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSD 131
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESK 401
+I P V + + + + +
Sbjct: 132 HMKIRNATFPGVQMKFVLQKLLTNIADAAKGY 163
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Score = 101 bits (251), Expect = 8e-25
Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 14/194 (7%)
Query: 433 EIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPA 492
++ +N D++ I S VG +I+ TS F +MG +P
Sbjct: 2 DLQFYQVYNAINNHADED-AIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPG 60
Query: 493 AMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552
+GA P V +I GDG+F M ++ N+PV ++ +N +
Sbjct: 61 GLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTN 120
Query: 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE---TPGPYL 609
+ F D K AEA G V++ +D+ + + +
Sbjct: 121 KNLFGVDF---------TDVDYAKIAEAQGAKGFTVSRIEDMDRVMAEAVAANKAGHTVV 171
Query: 610 LDVMVSYQEHVVPM 623
+D ++ Q+ +P+
Sbjct: 172 IDCKIT-QDRPIPV 184
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Score = 99.3 bits (246), Expect = 1e-24
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 2/172 (1%)
Query: 72 GADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSG 131
A ++ L GV VF G + I I +L RHE AA+ AR +G
Sbjct: 3 AAHALLSRLRDHGVGKVFGVVGREAASILFDE-VEGIDFVLTRHEFTAGVAADVLARITG 61
Query: 132 TPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQK-LLGTDAFQEIPVVEVTRYM 190
P C + GPG+TN+ TG+ + D P++A+ Q + D Q + V + M
Sbjct: 62 RPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPM 121
Query: 191 TKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDVQLELAVPNWNQP 242
+K+ + +I ++ A A + GP I +PVD+ + P
Sbjct: 122 SKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTTVP 173
|
| >d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Score = 98.9 bits (245), Expect = 1e-24
Identities = 41/174 (23%), Positives = 58/174 (33%), Gaps = 7/174 (4%)
Query: 255 EPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGLFPC 312
+ + A Q L+ E+K+PVL VG + S +R IPV T + G+ P
Sbjct: 3 DGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPV 62
Query: 313 TDELCLRMVGMFGTV-----YANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHID 367
EL V + DL+L G + E + + K V I
Sbjct: 63 GHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRIS 122
Query: 368 IDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKK 421
N I +V PDV + D S G D R + E
Sbjct: 123 PTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLA 176
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Score = 98.8 bits (245), Expect = 2e-24
Identities = 33/188 (17%), Positives = 71/188 (37%), Gaps = 12/188 (6%)
Query: 434 IPPQYAIQILNE-LTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPA 492
+ ++ ++ + + + + + + R+ L S +G MG G+
Sbjct: 6 MNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMG- 64
Query: 493 AMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552
AA A G V+ ++GD +F + EL I N+PV ++++NN + E + +
Sbjct: 65 YCVAAAAVTGKPVIAVEGDSAFGFSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPG 124
Query: 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLETPGPYLLDV 612
+ EA G +++AA++ + + P L++
Sbjct: 125 VISCTRLT----------RGRYDMMMEAFGGKGYVANTPAELKAALEEAVASGKPCLINA 174
Query: 613 MVSYQEHV 620
M+ V
Sbjct: 175 MIDPDAGV 182
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Score = 98.5 bits (244), Expect = 3e-24
Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 19/196 (9%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
+ + + L II G AI + + +GS+G+ L AA
Sbjct: 5 LTQENFWRTLQTFIR-PGDIILADQGTSAFGAIDLRLPAD-VNFIVQPLWGSIGYTLAAA 62
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
GA A P V+ + GDG+ + +QEL ++ + IL++NN+ +
Sbjct: 63 FGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQR 122
Query: 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGI----PAARVTKKKDVRAAIQLMLETPGPYL 609
N + +A + RV++ + + ++ + L
Sbjct: 123 YND------------IALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSL 170
Query: 610 LDVMVSYQEHVVPMIP 625
++VM+ + + P++
Sbjct: 171 IEVMLP-KADIPPLLG 185
|
| >d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Score = 96.3 bits (239), Expect = 6e-24
Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 3/141 (2%)
Query: 258 ELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGLFPCTDE 315
+ + SK L L L+K+V + MG G+F
Sbjct: 16 KAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQA 75
Query: 316 LCLRMV-GMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIG 374
G T A+ D +L G RF + +T+ T A+ + + + +G
Sbjct: 76 GFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVG 135
Query: 375 KVKLPDVSICADAKLVFNRMN 395
V + + + +
Sbjct: 136 DVWFTGIPMNQAIETLVELCK 156
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Score = 97.0 bits (240), Expect = 6e-24
Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 10/191 (5%)
Query: 424 PFSYKTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGF 483
P + P+ LN++ + I Q +
Sbjct: 2 PAKVDQDAGRLHPETVFDTLNDMAPEN-AIYLNESTSTTAQMWQRLNMRNPGSY-YFCAA 59
Query: 484 GSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGM 543
G +GF LPAA+G +A P V+ + GDGS ++ L NIP +++NN G
Sbjct: 60 GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGA 119
Query: 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE 603
+ N + D A+ G+ A + + ++ ++Q L
Sbjct: 120 LRWFAGVLEAENVPGLDVPGI--------DFRALAKGYGVQALKADNLEQLKGSLQEALS 171
Query: 604 TPGPYLLDVMV 614
GP L++V
Sbjct: 172 AKGPVLIEVST 182
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.4 bits (239), Expect = 2e-23
Identities = 29/200 (14%), Positives = 63/200 (31%), Gaps = 23/200 (11%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
+ ++ L + ++ G Q ++ +GS+GF A
Sbjct: 5 LKQEWMWNQLGNFLQEG-DVVIAETGTSAFGINQTTFPNN-TYGISQVLWGSIGFTTGAT 62
Query: 494 MGAA----VANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYED 549
+GAA +P V+ GDGS + +QE++ + + + ++NN +
Sbjct: 63 LGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHG 122
Query: 550 RYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIP---AARVTKKKDVRAAIQ--LMLET 604
+ N D L G RV + Q +
Sbjct: 123 PKAQYNEIQ------------GWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDN 170
Query: 605 PGPYLLDVMVSYQEHVVPMI 624
++++M+ + ++
Sbjct: 171 SKIRMIEIMLPVFDAPQNLV 190
|
| >d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Score = 94.2 bits (233), Expect = 6e-23
Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 11/186 (5%)
Query: 252 LPKEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGL 309
+ PD+ A+ Q KLI ++KNP+ +G S+ LR+ + + IPVT T G
Sbjct: 2 MGAAPDD-AIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGA 60
Query: 310 FPCTDELCLRM-VGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDI 368
+ VG+F + + DL++ G E + + A +VHID+
Sbjct: 61 VNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMW--NSGNATLVHIDV 118
Query: 369 DSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKYPFSYK 428
+ PDV + D N++ ++ + S E+ ++
Sbjct: 119 LPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRL-----VLSPQAAEILRDRQHQRELLD 173
Query: 429 TFGEEI 434
G ++
Sbjct: 174 RRGAQL 179
|
| >d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Score = 93.0 bits (230), Expect = 1e-22
Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 3/145 (2%)
Query: 254 KEPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGLFP 311
+ A+ +TLK I + VG + E KF G V FP
Sbjct: 5 EASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFP 64
Query: 312 CTDELCLRMVG-MFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDS 370
+ L + + E D ++A FN+ T+ D K+V + S
Sbjct: 65 EENALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRS 124
Query: 371 NEIGKVKLPDVSICADAKLVFNRMN 395
+ ++ P V + + +++
Sbjct: 125 VVVNGIRFPSVHLKDYLTRLAQKVS 149
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Score = 94.6 bits (234), Expect = 2e-22
Identities = 39/193 (20%), Positives = 81/193 (41%), Gaps = 11/193 (5%)
Query: 434 IPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAA 493
+ ++ +N++ + + I S VG + A + + + +TS+ F +MG G+P A
Sbjct: 6 LQAYQVLRAVNKIAEPD-AIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGA 64
Query: 494 MGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553
+ A + P V ++ GDG M +Q+LA ++PV ++ N G + ++ +
Sbjct: 65 IAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGWIKDEQEDTNQ 124
Query: 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQ--LMLETPGPYLLD 611
+ D D K A+ + A RV K + + + + P L+D
Sbjct: 125 NDFIGVEFND--------IDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLID 176
Query: 612 VMVSYQEHVVPMI 624
+++ +
Sbjct: 177 AVITGDRPLPAEK 189
|
| >d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Score = 86.5 bits (213), Expect = 2e-20
Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 4/150 (2%)
Query: 255 EPDELALRQTLKLIVESKNPVLCVGGGCLNS--SEELRKFVGLTGIPVTCTTMGLGLFPC 312
++ L +K + + NP + +G + + + PV
Sbjct: 3 RLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFP 62
Query: 313 TDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDF-ATRAKIVHIDIDSN 371
T C R + G + + D++L G + +++ + D
Sbjct: 63 TRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPL 122
Query: 372 EIGKVKLPDVSICADAKLVFNRMNMILESK 401
E + +I AD + + + ++E
Sbjct: 123 EAARAP-MGDAIVADIGAMASALANLVEES 151
|
| >d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Score = 84.3 bits (207), Expect = 2e-19
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 7/175 (4%)
Query: 253 PKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPC 312
P P + ++L+ SK PV+ G G + +++ PV T F
Sbjct: 3 PIAPAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEW 62
Query: 313 TDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNE 372
E G AN + E D +L AG F F + IDID
Sbjct: 63 DFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEG--TFRNVDNFIQIDIDPAM 120
Query: 373 IGKVKLPDVSICADAKLVFNRMNMILESKG-----VGFMFDFSAWREELHEQKKK 422
+GK DV+I DA L + + +++ + + + WRE ++ + K
Sbjct: 121 LGKRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWREYINMLETK 175
|
| >d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Score = 81.6 bits (200), Expect = 2e-18
Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 8/174 (4%)
Query: 250 SSLPKEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGL 309
+ L EPD A+ + + ++ ++ P++ G G + +EL + IP+ T G+
Sbjct: 9 TPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGI 68
Query: 310 FPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDID 369
L AN A+ + D++L G + SK + IDID
Sbjct: 69 VADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRY--FLQIDID 126
Query: 370 SNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKY 423
++GK D+++ ADA+ + + + + + W + K +
Sbjct: 127 PAKLGKRHKTDIAVLADAQKTLAAILAQVSER------ESTPWWQANLANVKNW 174
|
| >d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Score = 75.0 bits (183), Expect = 2e-16
Identities = 40/172 (23%), Positives = 62/172 (36%), Gaps = 15/172 (8%)
Query: 256 PDELALRQTLKLIVESKNPVLCVGGGCLNSS--EELRKFVGLTGIPVTCTTMGLGLFPCT 313
P E A+ + LI +K PV+ +G G + +E+R V TGIP M GL P
Sbjct: 4 PAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDN 63
Query: 314 DELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSN 371
+A+ +CD+ + G R N M K V IDI +N
Sbjct: 64 HP-------QSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQAN 116
Query: 372 EIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWREELHEQKKKY 423
E+ + + D K + + L+ + W L +
Sbjct: 117 EMDSNQPIAAPVVGDIKSAVSLLRKALKGAP----KADAEWTGALKAKVDGN 164
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 643 | |||
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 100.0 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 100.0 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 100.0 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 100.0 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 100.0 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 100.0 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 100.0 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 100.0 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 100.0 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 100.0 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 100.0 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 100.0 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 100.0 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 100.0 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 100.0 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 100.0 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 100.0 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 100.0 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 100.0 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 100.0 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 100.0 | |
| d1ybha1 | 179 | Acetohydroxyacid synthase catalytic subunit {Thale | 100.0 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 100.0 | |
| d2djia1 | 177 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.96 | |
| d2ez9a1 | 183 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.96 | |
| d2ihta1 | 177 | Carboxyethylarginine synthase {Streptomyces clavul | 99.96 | |
| d1t9ba1 | 171 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.96 | |
| d1ozha1 | 179 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.95 | |
| d2ji7a1 | 175 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.94 | |
| d1pvda1 | 179 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.92 | |
| d1ovma1 | 161 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.92 | |
| d1zpda1 | 175 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.91 | |
| d1q6za1 | 160 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.9 | |
| d1ytla1 | 158 | Acetyl-CoA decarbonylase/synthase complex epsilon | 99.78 | |
| d2c42a2 | 447 | Pyruvate-ferredoxin oxidoreductase, PFOR, domains | 99.11 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 98.87 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 98.81 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 98.78 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 98.76 | |
| d2c42a1 | 257 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 98.74 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 98.62 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 98.5 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 98.37 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 98.3 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 98.26 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 97.35 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 97.03 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 97.01 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 96.83 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 96.83 | |
| d1gpua2 | 197 | Transketolase (TK), Pyr module {Baker's yeast (Sac | 96.71 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 96.69 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 96.61 | |
| d1efva2 | 124 | C-terminal domain of the electron transfer flavopr | 96.48 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 96.48 | |
| d1itza2 | 192 | Transketolase (TK), Pyr module {Maize (Zea mays) [ | 96.41 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 96.38 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 96.34 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 96.3 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 96.26 | |
| d2r8oa1 | 195 | Transketolase (TK), Pyr module {Escherichia coli [ | 96.19 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 96.14 | |
| d1r9ja1 | 190 | Transketolase (TK), Pyr module {Leishmania mexican | 96.12 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 95.94 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 95.87 | |
| d3clsd2 | 123 | C-terminal domain of the electron transfer flavopr | 95.77 | |
| d1s5pa_ | 235 | NAD-dependent deacetylase CobB {Escherichia coli [ | 95.04 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 94.77 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 94.75 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 94.42 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 94.37 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 94.15 | |
| d1yc5a1 | 245 | NAD-dependent deacetylase NpdA {Thermotoga maritim | 94.07 | |
| d1m2ka_ | 249 | AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo | 94.04 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 94.03 | |
| d1ma3a_ | 252 | AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog | 94.02 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 93.76 | |
| d2b4ya1 | 267 | NAD-dependent deacetylase sirtuin-5 {Human (Homo s | 93.36 | |
| d1q1aa_ | 289 | Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.99 | |
| d1j8fa_ | 323 | Sirt2 histone deacetylase {Human (Homo sapiens) [T | 92.83 | |
| d1pnoa_ | 180 | Transhydrogenase domain III (dIII) {Rhodospirillum | 91.69 | |
| d1d4oa_ | 177 | Transhydrogenase domain III (dIII) {Cow (Bos tauru | 91.03 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 90.51 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 88.58 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 87.27 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 86.62 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 86.55 | |
| d1umdb1 | 186 | Branched-chain alpha-keto acid dehydrogenase, Pyr | 86.54 | |
| d1qs0b1 | 204 | 2-oxoisovalerate dehydrogenase (E1B), Pyr module { | 84.55 | |
| d2ozlb1 | 192 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 84.51 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 84.45 | |
| d1qs0b1 | 204 | 2-oxoisovalerate dehydrogenase (E1B), Pyr module { | 81.86 | |
| d2r8oa1 | 195 | Transketolase (TK), Pyr module {Escherichia coli [ | 81.57 | |
| d1ik6a1 | 191 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 80.37 |
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=100.00 E-value=7.4e-49 Score=378.00 Aligned_cols=190 Identities=73% Similarity=1.250 Sum_probs=181.2
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEE
Q 040733 59 DFSSRFAPDKPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCL 137 (643)
Q Consensus 59 ~~~~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~ 137 (643)
+|++|++|.++|+|+|+|++.|+++||++|||+||+.+++|+++|.+++ ++++.+|||++|+|||+||+|+||||+||+
T Consensus 1 t~~~~~~~~~~~~Gad~i~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~ 80 (195)
T d1ybha2 1 TFISRFAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICI 80 (195)
T ss_dssp CCCCSSCTTCCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEE
T ss_pred CccccCCCCCCccHHHHHHHHHHHCCCCEEEEcCCccHHHHHHHHhhhcceeecccccHHHHHHHHHHHHHHHCCCeEEE
Confidence 5899999999999999999999999999999999999999999998887 999999999999999999999999999999
Q ss_pred EccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 138 VSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 138 ~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
+|+|||++|+++||++|+.|++|||+|+|+.+....+++.+|+.|+.+++++++||++++.+++++++.+++||+.|.++
T Consensus 81 ~t~GpG~~N~~~gl~~A~~~~~Pvlvi~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~A~~~a~~~ 160 (195)
T d1ybha2 81 ATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSG 160 (195)
T ss_dssp ECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSS
T ss_pred EecChHHHHHHHHHHHHHHcCCCEEEEecCCcHHHhccCcccccchhhhhcccccchhhcchHhhcchHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcccchhhhccCCCCCCCCCCCCC
Q 040733 218 RPGPVLIDIPVDVQLELAVPNWNQPCKLPSC 248 (643)
Q Consensus 218 ~~GPV~i~iP~Dv~~~~~~~~~~~~~~~p~~ 248 (643)
|+|||||+||.|++.+++.+.|+...++|.|
T Consensus 161 r~GPV~l~iP~Dv~~~~~~~~~~~~~~~Pg~ 191 (195)
T d1ybha2 161 RPGPVLVDVPKDIQQQLAIPNWEQAMRLPGY 191 (195)
T ss_dssp SCCEEEEEEEHHHHHCEECCCTTCCCCCHHH
T ss_pred CCCcEEEECChHHhhCccCCCCcccCCCCCC
Confidence 9999999999999998887766554444443
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=100.00 E-value=1.6e-47 Score=373.18 Aligned_cols=208 Identities=71% Similarity=1.173 Sum_probs=198.6
Q ss_pred CCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecC
Q 040733 432 EEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGD 511 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GD 511 (643)
+.|+|+++++.|++++++ |+||++|+|++.+|..++++++++++++.++++|+|||++|+|||+++|+|+++||+|+||
T Consensus 1 e~i~P~~v~~~l~~~l~~-d~ivv~D~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~~A~p~~~Vi~i~GD 79 (208)
T d1ybha3 1 EAIPPQYAIKVLDELTDG-KAIISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGD 79 (208)
T ss_dssp TBCCHHHHHHHHHHHTTT-CCEEEECSSHHHHHHHHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEH
T ss_pred CccCHHHHHHHHHhhCCc-CeEEEEcCcHHHHHHHHhcccCCCceeccccccccchhhhhhHHHHHhcCCCCcEEEEccC
Confidence 358999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCCh
Q 040733 512 GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKK 591 (643)
Q Consensus 512 Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~ 591 (643)
|||+|++|||+|++||++|+++||+||++||+++++|...|+.++..+...++.......+||+++|++||+++++|+++
T Consensus 80 Gsf~m~~~El~Ta~r~~lpi~iiV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~~~ 159 (208)
T d1ybha3 80 GSFIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKK 159 (208)
T ss_dssp HHHHHTTTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEECBH
T ss_pred CchhhhhhhHHHHHHhCCCEEEEEEeccccccceehhhhcccccccccccccccccCCCCCCHHHhhccCCceEEEcCCH
Confidence 99999999999999999999999999999999999999999888877666666555667789999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCCCcccccccccCCCC
Q 040733 592 KDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTILEDDGR 640 (643)
Q Consensus 592 ~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~~~~~~~~~~~~~~~ 640 (643)
+||+++|+++++.++|+||||+||+++++.|++|++.++++|+..+|+|
T Consensus 160 ~el~~al~~a~~~~~p~lIeV~id~~~~v~P~i~~g~~~~~m~~~~d~~ 208 (208)
T d1ybha3 160 ADLREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGR 208 (208)
T ss_dssp HHHHHHHHHHHHSSSCEEEEEECCTTCCCCSBCCTTCCGGGCBCSCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEEEECCCCccCCCCCCCCCHHHHhhccCCC
Confidence 9999999999999999999999999999999999999999999999997
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=100.00 E-value=7.5e-45 Score=343.52 Aligned_cols=167 Identities=32% Similarity=0.512 Sum_probs=160.9
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+|+++|+|++.|+++||++|||+||+.+++|+++|.++ +|++|.+|||++|+|||+||+|+|||||||++|+|||++|
T Consensus 2 ~m~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~~i~~i~~r~E~~A~~~A~gyar~tgk~gv~~~t~GpG~~N 81 (174)
T d2ez9a2 2 NILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTH 81 (174)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CchHHHHHHHHHHHCCCCEEEEECCHhHHHHHHHHHhcCCCcEEEEecccchhHHHHHHHHhhcCceeEEeecccccccc
Confidence 58999999999999999999999999999999999643 3999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++||++|+.|++|||+|+|+.++...+++.+|++|+.++++++|||++++.+++++++.+++||+.|.++ ||||||+|
T Consensus 82 ~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~Q~~d~~~~~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~-pGPv~l~i 160 (174)
T d2ez9a2 82 LMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAH-QGVAVVQI 160 (174)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCHHHHTTTCSEEEECCCSTTHHHHHHHHHHHHHHH-TSEEEEEE
T ss_pred hhhhHHHHHhcCccceeeeccccccccCccccccchhhhhhccccccccccccHHHHHHHHHHHHHHHhCC-CCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974 69999999
Q ss_pred ccchhhhccC
Q 040733 227 PVDVQLELAV 236 (643)
Q Consensus 227 P~Dv~~~~~~ 236 (643)
|.|++.++++
T Consensus 161 P~Dv~~~~i~ 170 (174)
T d2ez9a2 161 PVDLPWQQIP 170 (174)
T ss_dssp ETTGGGSEEE
T ss_pred CcccccCcCC
Confidence 9999998874
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=1.4e-44 Score=343.84 Aligned_cols=168 Identities=35% Similarity=0.532 Sum_probs=158.4
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
.++|+|+|++.|+++||++|||+||+.+++|+++|.+.+|++|.+|||++|+|||+||+|++||||||++|+|||++|++
T Consensus 4 ~~~G~d~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~ 83 (181)
T d1ozha2 4 WAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLI 83 (181)
T ss_dssp ESCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTH
T ss_pred cccHHHHHHHHHHHCCCCEEEEeCcHhHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhcCCccceeeccchhhhhhh
Confidence 57999999999999999999999999999999999887899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
+||++|+.|++|||+|+|+.++...+++.+|++||..++++++||++++.+++++++.+++||+.|+++|+|||||+||.
T Consensus 84 ~gi~~A~~~~~Pvl~isg~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (181)
T d1ozha2 84 TGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQ 163 (181)
T ss_dssp HHHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred hhHHHHhhcCCceeeeecccchhhccccccccccccccccccchheeccCchhHHHHHHHHHHHHHhhCCCccEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccC
Q 040733 229 DVQLELAV 236 (643)
Q Consensus 229 Dv~~~~~~ 236 (643)
|++.+++.
T Consensus 164 Dv~~~~~~ 171 (181)
T d1ozha2 164 DVVDGPVS 171 (181)
T ss_dssp HHHHSCEE
T ss_pred HHhcCcCC
Confidence 99998774
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.8e-44 Score=336.78 Aligned_cols=168 Identities=51% Similarity=0.831 Sum_probs=163.8
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTN 146 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N 146 (643)
+.|||+|+|++.|+++||++|||+||+.+++|+++|.+.+ +++|.+|||++|+|||+||+|++|||+||++|+|||++|
T Consensus 2 ~~mtg~~~l~~~L~~~Gi~~vFgipG~~~~~l~~al~~~~~~~~i~~~~E~~A~~~A~gyar~tg~~~v~~~t~GpG~~n 81 (175)
T d1t9ba2 2 VGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN 81 (175)
T ss_dssp TTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHT
T ss_pred CcEEHHHHHHHHHHHCCCCEEEEcCChhHHHHHHHHhhcccceEEEecCchhHHHHHHHHHHHhCCceEEEEecCcHHHH
Confidence 4689999999999999999999999999999999997766 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+++|+++|+.+++|||+|+|+.+....+++.+|++|+.+++++++||++++.+++++++.+++||+.|.++|+|||||+|
T Consensus 82 ~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPv~l~i 161 (175)
T d1t9ba2 82 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDL 161 (175)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCCChhhcCCCccccccHhHhcccceeeeEecCCHHHHHHHHHHHHHHHhcCCCccEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcc
Q 040733 227 PVDVQLELA 235 (643)
Q Consensus 227 P~Dv~~~~~ 235 (643)
|.|++.+++
T Consensus 162 P~Dv~~~~~ 170 (175)
T d1t9ba2 162 PKDVTAAIL 170 (175)
T ss_dssp EHHHHHSBC
T ss_pred Chhhhhccc
Confidence 999998766
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=100.00 E-value=3.9e-44 Score=341.41 Aligned_cols=169 Identities=27% Similarity=0.424 Sum_probs=162.3
Q ss_pred CCCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC--CCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhH
Q 040733 68 KPRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRS--NIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVT 145 (643)
Q Consensus 68 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~ 145 (643)
.+|+++|+|++.|+++||++|||+||+.+++|+++|.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||++
T Consensus 2 ~~i~~~~~i~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~r~E~~A~~~A~gyar~tg~~gv~~~t~GpG~~ 81 (184)
T d2djia2 2 NKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGAS 81 (184)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCEEEEECTTHHHH
T ss_pred CceeHHHHHHHHHHHCCCCEEEEECChhHHHHHHHHHhccCCcEEEEecCCcchHHHHHhhhhcccCcceeecccccccc
Confidence 468999999999999999999999999999999999643 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEE
Q 040733 146 NIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLID 225 (643)
Q Consensus 146 N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~ 225 (643)
|+++||++|+.+++|||+|+|++++...+++.+|++||..+++++|||++++.+++++++.+++||+.|+++| |||||+
T Consensus 82 n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~Q~~d~~~~~~~itk~~~~v~~~~~~~~~~~~A~~~a~~~r-GPv~i~ 160 (184)
T d2djia2 82 HLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLE 160 (184)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEESCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred chhHhHHHHHHhCccceeecccchhhHhhcCcccccccccchhhhcceeeccccchhhHHHHHHHHHHHhCCC-CCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 999999
Q ss_pred cccchhhhccCC
Q 040733 226 IPVDVQLELAVP 237 (643)
Q Consensus 226 iP~Dv~~~~~~~ 237 (643)
||.|++.++++.
T Consensus 161 iP~Dv~~~~v~~ 172 (184)
T d2djia2 161 VPGDFAKVEIDN 172 (184)
T ss_dssp EETTGGGCEEEG
T ss_pred eCchhhhCcCCC
Confidence 999999988743
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=7.3e-44 Score=338.55 Aligned_cols=166 Identities=27% Similarity=0.463 Sum_probs=159.9
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTG 150 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~g 150 (643)
+++++|+|.|+++||++|||+||+.+++|+++|.+ +|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++|
T Consensus 2 ~v~~~i~e~L~~~GV~~vFgipG~~~~~~~~al~~-~i~~i~~rhE~~A~~mA~gyar~tgk~~v~~~~~GpG~~n~~~g 80 (180)
T d1q6za2 2 SVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFPE-DFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGA 80 (180)
T ss_dssp BHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCCT-TCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHCCCCEEEEECcHhHHHHHHHHHh-CCeEEEEccchhHHHHHHHHhhhccCcceEEeccccccccccce
Confidence 68999999999999999999999999999999954 69999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCEEEEeCCCcccccCCCC-CCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 151 LMDAYSDSIPILAITGQVSQKLLGTDA-FQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 151 l~~A~~~~vPvlvItg~~~~~~~g~~~-~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
|++|+.+++|||+|+|+.++...|++. +|++||.++++++|||++++.+++++++.+++||+.|.++|+|||||+||.|
T Consensus 81 l~~A~~~~~Pvlvi~g~~~~~~~g~~~~~q~~D~~~~~~~~tK~~~~v~~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~D 160 (180)
T d1q6za2 81 LSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 160 (180)
T ss_dssp HHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred eHhhhhcccceeeeccccccccccccccchhhheeecccccccccccCCCHHHHHHHHHHHHHHHhcCCCccEEEEcChh
Confidence 999999999999999999999889875 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCC
Q 040733 230 VQLELAVP 237 (643)
Q Consensus 230 v~~~~~~~ 237 (643)
++.+++++
T Consensus 161 ~~~~~~~p 168 (180)
T d1q6za2 161 DWDKDADP 168 (180)
T ss_dssp GTTSBCCG
T ss_pred HhcCcCCC
Confidence 99987754
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=100.00 E-value=3.7e-43 Score=336.68 Aligned_cols=167 Identities=27% Similarity=0.439 Sum_probs=160.3
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
.++|+|+|++.|+++||++|||+||+.+++++++|.++++++|.+|||++|+|||+||+|++|||+||++|+|||++|++
T Consensus 3 ~~~G~~~i~~~L~~~GV~~vFg~pG~~~~~~~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~n~~ 82 (188)
T d2ji7a2 3 LTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGV 82 (188)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHH
T ss_pred cccHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhCCCEEEEecccchhhhHHHHHHhhhcccceeeccccccccccc
Confidence 34799999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCccccc--CCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLL--GTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~--g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
+||++|+.+++|||+|+|+.++... +++.+|++||.++++++|||++++.+++++++.+++||+.|.++|+|||||+|
T Consensus 83 ~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~~~~A~~~a~~~~~GPV~l~i 162 (188)
T d2ji7a2 83 TSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDL 162 (188)
T ss_dssp HHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred hhHHHHHHhcccceEEeccCchhhhcccccccceeeeecccCCcchhhhccccccccHHHHHHHHHHHhCCCCceEEEEc
Confidence 9999999999999999999988754 45789999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcc
Q 040733 227 PVDVQLELA 235 (643)
Q Consensus 227 P~Dv~~~~~ 235 (643)
|.|++.+++
T Consensus 163 P~dv~~~~~ 171 (188)
T d2ji7a2 163 PAKLFGQTI 171 (188)
T ss_dssp EHHHHTCEE
T ss_pred ChhHhhCcc
Confidence 999998776
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.5e-42 Score=337.75 Aligned_cols=197 Identities=40% Similarity=0.737 Sum_probs=184.1
Q ss_pred CCCCCCHHHHHHHHHhcCCC--CCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEE
Q 040733 430 FGEEIPPQYAIQILNELTDD--EETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVD 507 (643)
Q Consensus 430 ~~~~i~~~~~~~~L~~~l~~--~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~ 507 (643)
.+.+++|+++++.|++++++ .|+||++|+|++.+|+.+++..++|+++++++++|+||+++|+|||+++|+|+|+||+
T Consensus 7 ~~~~i~P~~~~~~L~~~~~~~~~d~ivv~D~G~~~~~~~~~~~~~~p~~~i~~~~~g~mG~~~~aaiGa~lA~p~r~Vv~ 86 (227)
T d1t9ba3 7 PGSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVID 86 (227)
T ss_dssp TTCCBCHHHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCcCHHHHHHHHHHhcccCCCCEEEEECCcHHHHHHHHHcCCCCCceEeeecccccchhhHHHHHHHHhcCCCCeEEE
Confidence 45789999999999999864 3889999999999999999999999999999999999999999999999999999999
Q ss_pred EecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEE
Q 040733 508 IDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAAR 587 (643)
Q Consensus 508 i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~ 587 (643)
|+|||||+|++|||+|++||++|+++||+||++||++++.|...|+.++..+. ...+||.++|++||+++++
T Consensus 87 i~GDGsf~m~~~EL~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~~~~~~~~~~--------~~~~d~~~iA~a~G~~~~~ 158 (227)
T d1t9ba3 87 IDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLR 158 (227)
T ss_dssp EEEHHHHHHHGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCC--------CCCCCHHHHHHHTTCEEEE
T ss_pred eCCCcccccchHHHHHHhhcCCceEEEEEecccccchhHHHhhhhcccccccc--------CCCCCHHHHHhhcccceEe
Confidence 99999999999999999999999999999999999999999988876655443 4678999999999999999
Q ss_pred eCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCCCccccccc
Q 040733 588 VTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFKDTI 634 (643)
Q Consensus 588 V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~~~~~~~~~ 634 (643)
|++.+||+++|+++++.++|+||||+||+++++.|+++++..+.++.
T Consensus 159 v~~~~el~~al~~a~~~~~p~lieV~vd~~~~v~P~~~~g~~~~~~~ 205 (227)
T d1t9ba3 159 VKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEFI 205 (227)
T ss_dssp ECSHHHHHHHHHHHHHCSSCEEEEEEBCSSCCCSSBCCTTCCTTSCB
T ss_pred eCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCccCCCCCCCCHHHHh
Confidence 99999999999999999999999999999999999999998876653
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=100.00 E-value=2.4e-42 Score=330.18 Aligned_cols=165 Identities=27% Similarity=0.389 Sum_probs=155.1
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCCCeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSNIRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTG 150 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~g 150 (643)
|++|+|++.|+++||++|||+||+.+++|+++. ..+|++|.+|||++|+|||+||+|++||++||++|+|||++|+++|
T Consensus 2 T~a~~lv~~L~~~Gv~~vFgipG~~~~~~~~~~-~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~g 80 (186)
T d2ihta2 2 TAAHALLSRLRDHGVGKVFGVVGREAASILFDE-VEGIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTG 80 (186)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCS-STTCEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEEEEECChhHHHHHHHH-hcCCEEEEEccchhhHHHHHHHhhccCCcceeeccccccccchhhh
Confidence 799999999999999999999999999998553 2359999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCEEEEeCCCcccc-cCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 151 LMDAYSDSIPILAITGQVSQKL-LGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 151 l~~A~~~~vPvlvItg~~~~~~-~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
|++|+.|++|||+|+|+.+... .+.+.+|++||.++++++|||++++.+++++++.+++||+.|+++|+|||||+||.|
T Consensus 81 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~D 160 (186)
T d2ihta2 81 IATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 160 (186)
T ss_dssp HHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred hhHHHHhhccceeeeccCcchhccccccccccccccccCCceeeccccCCchhhhhHHHHHHHHHhcCCCeeEEEEeCHh
Confidence 9999999999999999998754 456789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC
Q 040733 230 VQLELAV 236 (643)
Q Consensus 230 v~~~~~~ 236 (643)
++.++..
T Consensus 161 i~~~~~~ 167 (186)
T d2ihta2 161 LLGSSEG 167 (186)
T ss_dssp HHTCCTT
T ss_pred HhhCccc
Confidence 9987653
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=100.00 E-value=1.8e-40 Score=326.44 Aligned_cols=180 Identities=21% Similarity=0.307 Sum_probs=168.3
Q ss_pred CCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec
Q 040733 431 GEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG 510 (643)
Q Consensus 431 ~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G 510 (643)
+++|+|+++++.|++.+++ |+|+++|+|++.+|+.++++.++|++|+.++++|+||+++|+||||++|.|+++||+++|
T Consensus 3 ~gpi~p~~v~~~l~~~l~~-d~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~Vv~i~G 81 (228)
T d2ez9a3 3 EGPLQAYQVLRAVNKIAEP-DAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAG 81 (228)
T ss_dssp SSBCCHHHHHHHHHHHCCT-TCEEEECSSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEE
T ss_pred CCCcCHHHHHHHHHhhCCC-CeEEEEcCcHHHHHHHHHccCCCCceeeeecccccccccchhhhhhhhhhccceeEeecC
Confidence 4679999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCC
Q 040733 511 DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK 590 (643)
Q Consensus 511 DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~ 590 (643)
||||+|++|||+|++||++|+++||+||++||+++++|...+..+..++. ...+||+++|++||+++++|++
T Consensus 82 DG~f~m~~~EL~Ta~~~~lpi~~vV~NN~~yg~i~~~q~~~~~~~~~~~~--------l~~~d~~~iA~a~G~~~~~v~~ 153 (228)
T d2ez9a3 82 DGGASMTMQDLATQVQYHLPVINVVFTNCQYGWIKDEQEDTNQNDFIGVE--------FNDIDFSKIADGVHMQAFRVNK 153 (228)
T ss_dssp HHHHHHHGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSB--------CCCCCHHHHHHHTTCEEEEECB
T ss_pred CccccccchhhhhhccccCceEEEEeccccchhhhhhhhhcccCCccccc--------ccCccHHhhccccccceEEeCC
Confidence 99999999999999999999999999999999999999887776654443 3678999999999999999999
Q ss_pred hhHHHHHHHH--HHhCCCcEEEEEEeCCCCC
Q 040733 591 KKDVRAAIQL--MLETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 591 ~~eL~~al~~--al~~~gp~lIeV~v~~~~~ 619 (643)
++||+.+|++ +++++||+||||+|++++.
T Consensus 154 ~~el~~al~~a~al~~~~p~lIev~vd~d~~ 184 (228)
T d2ez9a3 154 IEQLPDVFEQAKAIAQHEPVLIDAVITGDRP 184 (228)
T ss_dssp GGGHHHHHHHHHHHTTTSCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEECCCCc
Confidence 9999999987 4578999999999998763
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=100.00 E-value=3.4e-40 Score=315.23 Aligned_cols=164 Identities=18% Similarity=0.310 Sum_probs=151.6
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
+|++|+|++.|+++||++|||+||+.+++|+++|.+.+ |++|.+|||++|+|||+||+|++||++||+ |+|||++|++
T Consensus 2 ~Tv~~~l~~~L~~~Gv~~vFgvpG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~-t~GpG~~N~~ 80 (186)
T d1zpda2 2 YTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVV-TYSVGALSAF 80 (186)
T ss_dssp CBHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEE-CTTTTHHHHH
T ss_pred eeHHHHHHHHHHHCCCCEEEEeCChhHHHHHHHHHHcCCceEeeeccccceehhhhhhhhccccceeEe-eccccchhhh
Confidence 58999999999999999999999999999999998875 999999999999999999999999998775 7899999999
Q ss_pred HHHHHhhhCCCCEEEEeCCCcccccCCCCC-----Cc---cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCC
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLLGTDAF-----QE---IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPG 220 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~g~~~~-----Q~---~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~G 220 (643)
+||++|+.+++|||+|+|+.++...+.+.+ |+ .||.++++++|||++++.+++++++.+++||+.|.++| |
T Consensus 81 ~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-~ 159 (186)
T d1zpda2 81 DAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK-K 159 (186)
T ss_dssp HHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHGGGCSCEEEECSGGGHHHHHHHHHHHHHHHT-C
T ss_pred hhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhhccCCceeeeeEcCCHHHHHHHHHHHHHHHhhCC-C
Confidence 999999999999999999999887765532 22 24789999999999999999999999999999999987 7
Q ss_pred eEEEEcccchhhhcc
Q 040733 221 PVLIDIPVDVQLELA 235 (643)
Q Consensus 221 PV~i~iP~Dv~~~~~ 235 (643)
||||+||.|++.+++
T Consensus 160 PV~l~iP~Dv~~~~~ 174 (186)
T d1zpda2 160 PVYLEIACNIASMPC 174 (186)
T ss_dssp CEEEEEETTSTTSBC
T ss_pred CEEEECCcchhhCcC
Confidence 999999999998766
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.2e-40 Score=311.42 Aligned_cols=165 Identities=18% Similarity=0.320 Sum_probs=146.1
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
+||++|+|++.|+++||++|||+||+.+++|+++|.+++ |++|.+|||++|+|||+||+|++|++ +|++|+|||++|+
T Consensus 2 emt~~~~i~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~t~~~-~v~~t~GpG~~N~ 80 (180)
T d1pvda2 2 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMS-CIITTFGVGELSA 80 (180)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHGGGGSTTCEECCCSCHHHHHHHHHHHHHHHSCE-EEEEETTHHHHHH
T ss_pred ccCHHHHHHHHHHHCCCCEEEEeCCccHHHHHHHHHHhcceEEeeecccchhhHHHHHHhhccCCc-eeeeccccccchh
Confidence 589999999999999999999999999999999998875 99999999999999999999999885 5668999999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCc--------cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE--------IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~--------~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++||++|+.+++|||+|+|+.++...+++.+|+ .++.++++++|||++++.+++++++.+++||+.|.+ +|
T Consensus 81 ~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~-~~ 159 (180)
T d1pvda2 81 LNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYV-TQ 159 (180)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHHHHGGGCSEEEECCCTTTHHHHHHHHHHHHHH-HT
T ss_pred hHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhC-CC
Confidence 999999999999999999999887766654322 235689999999999999999999999999999987 46
Q ss_pred CeEEEEcccchhhhcc
Q 040733 220 GPVLIDIPVDVQLELA 235 (643)
Q Consensus 220 GPV~i~iP~Dv~~~~~ 235 (643)
|||||+||.|++..++
T Consensus 160 gPv~i~iP~dv~~~~v 175 (180)
T d1pvda2 160 RPVYLGLPANLVDLNV 175 (180)
T ss_dssp SCEEEEEETTTTTSEE
T ss_pred CCEEEECCcccccCcC
Confidence 9999999999998766
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=3.9e-39 Score=309.76 Aligned_cols=188 Identities=21% Similarity=0.374 Sum_probs=170.9
Q ss_pred CCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecC
Q 040733 432 EEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGD 511 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GD 511 (643)
.+++|.++++.|++.+++ |.+|++|+|++..|..+++...+|++|+.++++|+||+++|+|||+++|.|+++||+++||
T Consensus 3 ~pi~P~~v~~~L~~~l~~-d~ii~~d~G~~~~~~~~~l~~~~p~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vi~i~GD 81 (192)
T d1ozha3 3 FALHPLRIVRAMQDIVNS-DVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGD 81 (192)
T ss_dssp SSBCHHHHHHHHHHHCCT-TEEEEECSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEH
T ss_pred CCcCHHHHHHHHHHhCCC-CcEEEEcCcHHHHHHHHhcccCCCceeecccccccccccccchhHHHhhcccccceeeccc
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCCh
Q 040733 512 GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKK 591 (643)
Q Consensus 512 Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~ 591 (643)
|+|+|+++||+|+++|++|+++||+||++|++++..|...|... .++ ....+||+++|++||+++++|+++
T Consensus 82 G~f~~~~~el~t~~~~~l~~~iiv~nN~~~~~~~~~~~~~~~~~-~~~--------~~~~~d~~~~A~a~G~~~~~v~~~ 152 (192)
T d1ozha3 82 GGFLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL-SGV--------EFGPMDFKAYAESFGAKGFAVESA 152 (192)
T ss_dssp HHHHHHTTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC-CSC--------BCCCCCHHHHHHTTTSEEEECCSG
T ss_pred ccccchhhhHHHHhhhcCceeEEEEcCCCccccccccccccCcc-ccC--------cCCCCCHHHHHHHhccccEEeCCH
Confidence 99999999999999999999999999999999999887766432 222 235689999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEeCCCCCcccccCCCcccc
Q 040733 592 KDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMIPYDKSFK 631 (643)
Q Consensus 592 ~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~~~~~~~~ 631 (643)
+||+++|+++++.+||+||||+||+++++ +.+...++.
T Consensus 153 ~el~~al~~a~~~~gp~lIeV~vd~~~~p--~~~~~~~~~ 190 (192)
T d1ozha3 153 EALEPTLRAAMDVDGPAVVAIPVDYRDNP--LLMGQLHLS 190 (192)
T ss_dssp GGHHHHHHHHHHSSSCEEEEEEBCCTTHH--HHHTTBGGG
T ss_pred HHHHHHHHHHHHcCCcEEEEEEeCCCCCC--ccCCCCChh
Confidence 99999999999999999999999998864 334444443
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=100.00 E-value=5.8e-39 Score=309.75 Aligned_cols=180 Identities=28% Similarity=0.426 Sum_probs=163.8
Q ss_pred CCCCCHHHHHHHHHhcC-----CCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeE
Q 040733 431 GEEIPPQYAIQILNELT-----DDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIV 505 (643)
Q Consensus 431 ~~~i~~~~~~~~L~~~l-----~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~V 505 (643)
++.++++.+++.|++++ |+ |.+|++|+|++.+|+.++++..+|++|+.++++|+|||++|+|||+|+|+|+++|
T Consensus 5 ~d~~~~~~v~~~l~~~~~~~~~p~-d~iiv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~~a~p~~~V 83 (198)
T d2ihta3 5 EDGMRVHQVIDSMNTVMEEAAEPG-EGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPT 83 (198)
T ss_dssp SSSBCHHHHHHHHHHHHHHHSCTT-CCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCE
T ss_pred CCCCCHHHHHHHHHHHHHhccCCC-CEEEEEcCcHHHHHHHHHcCcCCCCeEEecCCcccchhHHHHHHHHhhhhcccce
Confidence 46788999999888765 66 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCE
Q 040733 506 VDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPA 585 (643)
Q Consensus 506 v~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~ 585 (643)
|+++|||||+|+++||+|++|+++|+++||+||++||+++++|...+....... .....+||+++|++||+++
T Consensus 84 v~i~GDGsf~~~~~el~t~~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~-------~~~~~~d~~~lA~a~G~~~ 156 (198)
T d2ihta3 84 FLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPA-------VKFGGVDFVALAEANGVDA 156 (198)
T ss_dssp EEEEEHHHHHHTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGG-------TBCCCCCHHHHHHHTTCEE
T ss_pred EeecccccccccchhhhhhhhhhhhhhHHHhhccccceEeeeeccccccccccc-------cccCCcchhhhccccCceE
Confidence 999999999999999999999999999999999999999998877665432211 1235789999999999999
Q ss_pred EEeCChhHHHHHHHHHHhCCCcEEEEEEeCCCC
Q 040733 586 ARVTKKKDVRAAIQLMLETPGPYLLDVMVSYQE 618 (643)
Q Consensus 586 ~~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~ 618 (643)
++|++++||+++|+++++.++|+||||+||++.
T Consensus 157 ~~v~~~~el~~al~~a~~~~~p~lIeV~vd~d~ 189 (198)
T d2ihta3 157 TRATNREELLAALRKGAELGRPFLIEVPVNYDF 189 (198)
T ss_dssp EECCSHHHHHHHHHHHHTSSSCEEEEEEBCCCC
T ss_pred EEeCCHHHHHHHHHHHHhCCCCEEEEEEcCCCC
Confidence 999999999999999999999999999999753
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=100.00 E-value=1.3e-38 Score=313.79 Aligned_cols=177 Identities=20% Similarity=0.256 Sum_probs=163.6
Q ss_pred CCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecC
Q 040733 432 EEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGD 511 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GD 511 (643)
++++|+++++.|++.+++ |+|+++|+|++..|+.++++.++|++|+.++++|+||+++|+||||++|+|+++||+|+||
T Consensus 1 Gpl~~~~v~~~l~~~l~~-d~iiv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~~lp~aiGa~~a~p~~~vv~i~GD 79 (229)
T d2djia3 1 GDLQFYQVYNAINNHADE-DAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGD 79 (229)
T ss_dssp SBCCHHHHHHHHHHHSCT-TCEEEECSSHHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEH
T ss_pred CCCCHHHHHHHHHhhCCC-CeEEEEcCcHhHHHHHHHcccCCCCeEEecCCcccccccchhhhhhhhhcccccccccccc
Confidence 468999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCCh
Q 040733 512 GSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKK 591 (643)
Q Consensus 512 Gsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~ 591 (643)
|||+|++|||+|++++++|+++||+||++|++++++|...+.. ..++ ....+||+++|++||+++++|++.
T Consensus 80 Gsf~m~~~eL~ta~~~~lpi~iiV~nN~~~~~i~~~~~~~~~~-~~~~--------~~~~~d~~~lA~a~G~~~~~v~~~ 150 (229)
T d2djia3 80 GAFSMTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKN-LFGV--------DFTDVDYAKIAEAQGAKGFTVSRI 150 (229)
T ss_dssp HHHHHHGGGHHHHHHTTCCCEEEEEECSBCTHHHHHHHHHCSC-CCSC--------BCCCCCHHHHHHHTTSEEEEECBH
T ss_pred cccccccchhhhhhcccCCceEEEeCCchhhhhhHHHHhhcCC-CCcC--------cCCCCChhhhhhccCccEEEEecH
Confidence 9999999999999999999999999999999999888765543 2222 246799999999999999999999
Q ss_pred hHHHHHHHHHHh---CCCcEEEEEEeCCCC
Q 040733 592 KDVRAAIQLMLE---TPGPYLLDVMVSYQE 618 (643)
Q Consensus 592 ~eL~~al~~al~---~~gp~lIeV~v~~~~ 618 (643)
+||+++|+++++ .++|+||||+|++++
T Consensus 151 ~el~~al~~A~~~~~~~~p~lIev~v~~~~ 180 (229)
T d2djia3 151 EDMDRVMAEAVAANKAGHTVVIDCKITQDR 180 (229)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred HHhHHHHHHHHHhcCCCCeEEEEEEeCCCC
Confidence 999999999874 469999999999875
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=100.00 E-value=3e-38 Score=300.38 Aligned_cols=165 Identities=21% Similarity=0.327 Sum_probs=146.2
Q ss_pred CCcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHH
Q 040733 69 PRKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNI 147 (643)
Q Consensus 69 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~ 147 (643)
++|++|+|++.|+++||++|||+||+.+++|++++.++. |++|.+|||++|+|||+||+|.+|+++| ++|+|||++|+
T Consensus 2 p~tvad~iv~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~~A~gyar~t~~~~v-~~t~GpG~~n~ 80 (178)
T d1ovma2 2 PYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAAL-LTTFGVGELSA 80 (178)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEE-EEETTHHHHHT
T ss_pred CccHHHHHHHHHHHCCCCEEEEeCChhHHHHHHHHHhCCCeEEEEeccchhhHHHHHHHHhcCCCceE-Eeecccccccc
Confidence 679999999999999999999999999999999998864 9999999999999999999999999876 57899999999
Q ss_pred HHHHHHhhhCCCCEEEEeCCCcccccCCCCCCc--------cCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCC
Q 040733 148 MTGLMDAYSDSIPILAITGQVSQKLLGTDAFQE--------IPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRP 219 (643)
Q Consensus 148 ~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~--------~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~ 219 (643)
++||++|+.|++|||+|+|+.++...+++.+|+ .|+..++++++||++.+.+++++.++++.+++.+.++
T Consensus 81 ~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~a~~~~-- 158 (178)
T d1ovma2 81 MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRER-- 158 (178)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHHT--
T ss_pred chhhhHHHhcCccEEEEecCCCchhhccccccccccccchhhhccccccccceeEEEeCcHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999999999876655443322 2568899999999999999999988777666666553
Q ss_pred CeEEEEcccchhhhccC
Q 040733 220 GPVLIDIPVDVQLELAV 236 (643)
Q Consensus 220 GPV~i~iP~Dv~~~~~~ 236 (643)
|||||+||.|++.+++.
T Consensus 159 ~Pv~i~iP~Dv~~~~~~ 175 (178)
T d1ovma2 159 RPGYLMLPADVAKKAAT 175 (178)
T ss_dssp CCEEEEEEHHHHHSBCC
T ss_pred CCEEEEEChHHhhCccC
Confidence 79999999999998764
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=2.4e-37 Score=295.12 Aligned_cols=176 Identities=22% Similarity=0.301 Sum_probs=163.5
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEE
Q 040733 429 TFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDI 508 (643)
Q Consensus 429 ~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i 508 (643)
...++++|+++++.|++++++ |.|++.|+|++..|..+++..+.+++++.+ ++|+||+++|+|+|+++|+|+++||+|
T Consensus 7 ~~~~~i~p~~~~~~l~~~l~~-d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~-~~g~mG~~~p~AiGa~la~p~~~vv~i 84 (183)
T d1q6za3 7 QDAGRLHPETVFDTLNDMAPE-NAIYLNESTSTTAQMWQRLNMRNPGSYYFC-AAGGLGFALPAAIGVQLAEPERQVIAV 84 (183)
T ss_dssp CCSSSBCHHHHHHHHHHHSCT-TCEEEEECTTSHHHHHHHCCCCSSSCEEEC-TTCCTTSHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCCCCHHHHHHHHHHhCCC-CcEEEEcCCchHHHHHHHHhhccccccccc-cCCCcccchhHHHhhhhhccccceEEe
Confidence 345689999999999999999 999999999999999999999999998876 469999999999999999999999999
Q ss_pred ecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe
Q 040733 509 DGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV 588 (643)
Q Consensus 509 ~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V 588 (643)
+|||+|+|++|||+|++++++|+++||+||++||+++++|...+..+..+.. .+.+||.++|++||+++++|
T Consensus 85 ~GDG~f~~~~~el~ta~~~~lpv~~iV~nN~~~g~~~~~~~~~~~~~~~~~~--------~~~~d~~~~a~a~G~~~~~v 156 (183)
T d1q6za3 85 IGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLD--------VPGIDFRALAKGYGVQALKA 156 (183)
T ss_dssp EEHHHHTTTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCB--------CCCCCHHHHHHHHTCEEEEE
T ss_pred ccccccccccHHHHHHHHhCCCEEEEEEeccccchhhhhhhcccccCccccc--------CCCccHHHHHHHcCCEEEEE
Confidence 9999999999999999999999999999999999999999888776654432 36789999999999999999
Q ss_pred CChhHHHHHHHHHHhCCCcEEEEEEe
Q 040733 589 TKKKDVRAAIQLMLETPGPYLLDVMV 614 (643)
Q Consensus 589 ~~~~eL~~al~~al~~~gp~lIeV~v 614 (643)
++++||+++|+++++.+||+||||+|
T Consensus 157 ~~~~el~~al~~a~~~~gp~lieV~T 182 (183)
T d1q6za3 157 DNLEQLKGSLQEALSAKGPVLIEVST 182 (183)
T ss_dssp SSHHHHHHHHHHHHTCSSCEEEEEEB
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 99999999999999999999999986
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=100.00 E-value=1.5e-37 Score=301.33 Aligned_cols=180 Identities=22% Similarity=0.321 Sum_probs=161.6
Q ss_pred CCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCc
Q 040733 433 EIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDG 512 (643)
Q Consensus 433 ~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDG 512 (643)
||++.++++.|++.+++ +.||++|+|++.+| .+.+..+++++++.++++|+|||++|+|||+++++|+|+||+++|||
T Consensus 2 Pl~~~~~~~~l~~~l~~-~~ivv~d~G~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGa~la~p~~~vv~i~GDG 79 (204)
T d1zpda3 2 PLVNAEIARQVEALLTP-NTTVIAETGDSWFN-AQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDG 79 (204)
T ss_dssp BCCHHHHHHHHHHTCCT-TEEEEECSSHHHHH-HHTCCCCTTCEEEECTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHH
T ss_pred CCCHHHHHHHHHhhCCC-CCEEEECchHhHHH-HHHhCCCCCCeEEcCCCCcccchhhHHHHHHHHhCCCCceecccccc
Confidence 68999999999999999 99999999998654 55677889999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC---------CC
Q 040733 513 SFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC---------GI 583 (643)
Q Consensus 513 sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~---------G~ 583 (643)
||+|++|||+|++++++|+++||+||++||+++++|+..|.. ..++||.+++++| |+
T Consensus 80 sf~m~~~eL~Ta~~~~lpi~iiV~NN~~~g~~~~~~~~~~~~--------------~~~~d~~~~~~~~~~~~~a~~~g~ 145 (204)
T d1zpda3 80 SFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNN--------------IKNWDYAGLMEVFNGNGGYDSGAA 145 (204)
T ss_dssp HHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGC--------------CCCCCHHHHHHHHHCTTSSSCCCC
T ss_pred ceeeeecccchhhhcccccceEEEecccccccceeccccccc--------------cchhhhhhhhhhcCcchhhhccCc
Confidence 999999999999999999999999999999988766544321 2457898888764 88
Q ss_pred CEEEeCChhHHHHHHHHHH-hCCCcEEEEEEeCCCCCcccccCCCc
Q 040733 584 PAARVTKKKDVRAAIQLML-ETPGPYLLDVMVSYQEHVVPMIPYDK 628 (643)
Q Consensus 584 ~~~~V~~~~eL~~al~~al-~~~gp~lIeV~v~~~~~~~p~~~~~~ 628 (643)
++++|++++||+++|++++ +.+||+||||+|++++.+.|+++.+.
T Consensus 146 ~~~~v~~~~el~~al~~al~~~~gp~lieV~vd~~~~~~p~~~~g~ 191 (204)
T d1zpda3 146 KGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGK 191 (204)
T ss_dssp EEEEESBHHHHHHHHHHHHHCCSSCEEEEEECCTTCCCHHHHHHHH
T ss_pred cEEEecCHHHHHHHHHHHHHcCCCcEEEEEEECcccCCcccchhcc
Confidence 9999999999999999998 47899999999999999998887654
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=100.00 E-value=6.6e-36 Score=285.01 Aligned_cols=179 Identities=18% Similarity=0.215 Sum_probs=156.6
Q ss_pred CCCCCHHHHHHHHHhcCCCC-CeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe
Q 040733 431 GEEIPPQYAIQILNELTDDE-ETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID 509 (643)
Q Consensus 431 ~~~i~~~~~~~~L~~~l~~~-d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~ 509 (643)
.+.+++..+++.|+++++++ |+|++.|.|++..|+.+++...+|++|+.++++|+||+++|+|+|++ +.|+|+||+|+
T Consensus 3 ~g~~~~~~~~~~l~~~~~~~~D~iiv~dgg~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~~aig~~-a~~~~~vv~i~ 81 (183)
T d2ji7a3 3 SGMMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAA-AVTGKPVIAVE 81 (183)
T ss_dssp TTCBCHHHHHHHHHHHHHHCCSSEEEEESSHHHHHHHHHSCCCSTTCEEECTTTTCTTCHHHHHHHHH-HHHCSCEEEEE
T ss_pred CCcCCHHHHHHHHHHHHhcCCCEEEEECchhHHHHHHHHhccCCCCcEEecCCccccccccchhhhhh-cCCcceEEEEE
Confidence 46799999999999987432 79999999999999999999999999999999999999999999887 56799999999
Q ss_pred cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC
Q 040733 510 GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT 589 (643)
Q Consensus 510 GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~ 589 (643)
|||||+|++|||+|++++++|+++||+||++|...+ |...+..+.... ....+||+++|++||+++++|+
T Consensus 82 GDGsf~~~~~el~ta~~~~l~i~iiV~NN~g~~~~~--q~~~~~~~~~~~--------~~~~~d~~~~A~a~G~~~~~v~ 151 (183)
T d2ji7a3 82 GDSAFGFSGMELETICRYNLPVTVIIMNNGGIYKGN--EADPQPGVISCT--------RLTRGRYDMMMEAFGGKGYVAN 151 (183)
T ss_dssp EHHHHHTTGGGHHHHHHTTCCEEEEEEECSBSSCSC--CCCSBTTBCCTT--------BCCCCCHHHHHHHTTCEEEEEC
T ss_pred cCcchhhchhhhhhhhhccccchhhhhhhhhhhhhh--hccccccccccc--------cccccchhhhhhhcCCcEEEeC
Confidence 999999999999999999999999999999876543 222222222111 3467899999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEEEeCCCCCc
Q 040733 590 KKKDVRAAIQLMLETPGPYLLDVMVSYQEHV 620 (643)
Q Consensus 590 ~~~eL~~al~~al~~~gp~lIeV~v~~~~~~ 620 (643)
+++||+++|+++++.++|+||||+||+++++
T Consensus 152 ~~~el~~al~~a~~~~~p~lIev~idp~~~v 182 (183)
T d2ji7a3 152 TPAELKAALEEAVASGKPCLINAMIDPDAGV 182 (183)
T ss_dssp SHHHHHHHHHHHHHHTSCEEEEEEBCTTSCC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEEECCCCCC
Confidence 9999999999999999999999999998865
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=100.00 E-value=3.2e-35 Score=283.27 Aligned_cols=179 Identities=18% Similarity=0.284 Sum_probs=157.0
Q ss_pred CCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEec
Q 040733 431 GEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDG 510 (643)
Q Consensus 431 ~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~G 510 (643)
+++++++++++.|++.+++ |.||++|+|++.+|. .++..+.+++++.+.++|+||+++|+|+|+++|.|+|+||+|+|
T Consensus 2 ~g~l~~~~~~~~l~~~l~~-d~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~G 79 (196)
T d1ovma3 2 DGSLTQENFWRTLQTFIRP-GDIILADQGTSAFGA-IDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTG 79 (196)
T ss_dssp CSBCCHHHHHHHHHHHCCT-TCEEEECTTHHHHHH-TTCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEE
T ss_pred CCccCHHHHHHHHHhhCCC-CCEEEEcCCHhHHHH-HHhccCCCCeEEeCCCCccccccchhhHHHHHhhhccceecccc
Confidence 4689999999999999999 999999999998765 56777888999999999999999999999999999999999999
Q ss_pred CccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCC----CEE
Q 040733 511 DGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGI----PAA 586 (643)
Q Consensus 511 DGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~----~~~ 586 (643)
||||+|++|||+|++++++|+++||+||++|+++++.|.. ..... ....+||.++|++||+ +++
T Consensus 80 DG~f~~~~~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~----~~~~~--------~~~~~~~~~~a~~~g~~~~~~~~ 147 (196)
T d1ovma3 80 DGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGA----EQRYN--------DIALWNWTHIPQALSLDPQSECW 147 (196)
T ss_dssp HHHHHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCT----TCGGG--------CCCCCCGGGSTTTSCSSCCEEEE
T ss_pred cccceeecccccccccccccceEEEEecCccccchhhhcc----ccccc--------cccccccchhHHhcCccccceeE
Confidence 9999999999999999999999999999999998765421 11111 1245799999999996 688
Q ss_pred EeCChhHHHHHHHHHHhCCCcEEEEEEeCCCCCccccc
Q 040733 587 RVTKKKDVRAAIQLMLETPGPYLLDVMVSYQEHVVPMI 624 (643)
Q Consensus 587 ~V~~~~eL~~al~~al~~~gp~lIeV~v~~~~~~~p~~ 624 (643)
+|++++||+++|+++++.+||+||||++++++ ..|++
T Consensus 148 ~v~~~~el~~al~~a~~~~gp~lIev~~~~~~-~~p~~ 184 (196)
T d1ovma3 148 RVSEAEQLADVLEKVAHHERLSLIEVMLPKAD-IPPLL 184 (196)
T ss_dssp EECBHHHHHHHHHHHTTCSSEEEEEEECCTTC-CCHHH
T ss_pred EEecHHHHHHHHHHHHHCCCcEEEEEEeChHh-CChhH
Confidence 99999999999999999999999999999865 43443
|
| >d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=100.00 E-value=3.3e-33 Score=265.49 Aligned_cols=176 Identities=63% Similarity=1.036 Sum_probs=160.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhh
Q 040733 254 KEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333 (643)
Q Consensus 254 ~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l 333 (643)
+.|+++.+++++++|.+||||+|++|+|+..+.+++.+|||++|+||++|++|+|++|++||+++|.+|..++..++.++
T Consensus 2 ~~P~~~~i~~~~~~L~~AkrPvii~G~G~~~a~~~l~~lae~~~~Pv~tt~~~~g~~~~~h~~~~G~~G~~g~~~~~~~~ 81 (179)
T d1ybha1 2 KPPEDSHLEQIVRLISESKKPVLYVGGGCLNSSDELGRFVELTGIPVASTLMGLGSYPCDDELSLHMLGMHGTVYANYAV 81 (179)
T ss_dssp CCCCHHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHHHHHhhhcccceecccccCCCccccccccccCCCcCCHHHHHHH
Confidence 34799999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChhHHH
Q 040733 334 NECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFSAWR 413 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~w~ 413 (643)
++|||||++|++++++.++.+..|.+++++||||+|+.++++++++++.|++|++.+|++|++.++.+......+...|+
T Consensus 82 ~~aDlil~lG~~l~~~~~~~~~~~~~~~kiI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~W~ 161 (179)
T d1ybha1 82 EHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWR 161 (179)
T ss_dssp HHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHHH
T ss_pred HhhhhhhhccccccccccccccccCCCCeEEEEeCcccccccccCCCceEEeccHHHHHHHHHHHHhhhhcchhhHHHHH
Confidence 99999999999999888877777888999999999999999999999999999999999999988764322234567899
Q ss_pred HHHHHHHHhCCCcccC
Q 040733 414 EELHEQKKKYPFSYKT 429 (643)
Q Consensus 414 ~~~~~~~~~~~~~~~~ 429 (643)
+++.+++++++..+++
T Consensus 162 ~~i~~~k~~~p~~~~~ 177 (179)
T d1ybha1 162 NELNVQKQKFPLSFKT 177 (179)
T ss_dssp HHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHhCCCCCCC
Confidence 9999999999876544
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-33 Score=272.80 Aligned_cols=174 Identities=17% Similarity=0.225 Sum_probs=150.0
Q ss_pred CCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHh----CCCCeEEE
Q 040733 432 EEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVA----NPGAIVVD 507 (643)
Q Consensus 432 ~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA----~p~~~Vv~ 507 (643)
.+|+|+++++.|++.+++ |.||++|.|++.+|..+ +.++++.+++.+.++|+||+++|+|+|+++| +|+|+||+
T Consensus 3 ~Pl~~~~~~~~l~~~l~~-~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~ 80 (196)
T d1pvda3 3 TPLKQEWMWNQLGNFLQE-GDVVIAETGTSAFGINQ-TTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVIL 80 (196)
T ss_dssp SBCCHHHHHHHHTTTCCT-TCEEEECTTHHHHHGGG-CCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCcCHHHHHHHHHhhCCC-CCEEEECCcHhHHHHHH-hhccCCCEEEccCCcCcccccccchhHHHHHHHhcCCCCceee
Confidence 579999999999999999 88999999999998765 4667778899999999999999999998887 79999999
Q ss_pred EecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCE--
Q 040733 508 IDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPA-- 585 (643)
Q Consensus 508 i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~-- 585 (643)
|+|||||+|++|||+|++||++|+++||+||++|++++..+ +.+..++ +...+||.++|++||+++
T Consensus 81 i~GDGsf~m~~~eL~ta~~~~l~i~~iV~nN~~y~~~~~~~----~~~~~~~--------~~~~~d~~~la~a~G~~~~~ 148 (196)
T d1pvda3 81 FIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIH----GPKAQYN--------EIQGWDHLSLLPTFGAKDYE 148 (196)
T ss_dssp EEEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHTTS----CTTCGGG--------CCCCCCGGGHHHHTTCSSEE
T ss_pred ccCccccccccccccccccccccceEEEEeCCccceeEeec----cCccccc--------cCCCCCHHHHHHHhCCCCce
Confidence 99999999999999999999999999999999999865332 2222222 235689999999999754
Q ss_pred -EEeCChhHHHHHHHHHH--hCCCcEEEEEEeCCCCC
Q 040733 586 -ARVTKKKDVRAAIQLML--ETPGPYLLDVMVSYQEH 619 (643)
Q Consensus 586 -~~V~~~~eL~~al~~al--~~~gp~lIeV~v~~~~~ 619 (643)
.+|++.+||+++++++. +.++|+||||++++.+.
T Consensus 149 ~~~v~~~~el~~al~~~~~~~~~~~~lIeV~i~~~d~ 185 (196)
T d1pvda3 149 THRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDA 185 (196)
T ss_dssp EEEECBHHHHHHHHTCTTTTSCSSEEEEEEECCTTCC
T ss_pred EEEecCHHHHHHHHHHHHHhCCCCcEEEEEECCCccC
Confidence 68999999999997654 45789999999998774
|
| >d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.96 E-value=9.4e-30 Score=241.08 Aligned_cols=145 Identities=24% Similarity=0.308 Sum_probs=134.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhh
Q 040733 255 EPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVN 334 (643)
Q Consensus 255 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~ 334 (643)
.|+++.+++++++|.+||||+|++|+|+.++.+++.+|||++|+||++|++|+|+||++||+|+|++|.+|+..++++++
T Consensus 5 ~P~~~~i~~~~~~l~~Ak~Pvii~G~g~~~a~~~l~~lae~l~~Pv~~t~~~~g~ip~~hp~~~G~~g~~~~~~~~~~l~ 84 (177)
T d2djia1 5 APAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANETIL 84 (177)
T ss_dssp CCCHHHHHHHHHHHHTCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECTTCGGGSCTTCTTBCCCSSSSSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCEEEEECcChhhHHHHHHHhhhccceEEEecccccccccccccccccccccccChhhhhhhh
Confidence 47999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhc
Q 040733 335 ECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESK 401 (643)
Q Consensus 335 ~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~ 401 (643)
+|||||+||++++...+.+ .|.+++++||||+|+.++++++++++.|+||++.+|++|++.+...
T Consensus 85 ~aDlvi~lG~~~~~~~~~~--~~~~~~kiI~Id~d~~~i~~~~~~d~~i~gD~~~~L~~L~~~l~~~ 149 (177)
T d2djia1 85 EADTVLFAGSNFPFSEVEG--TFRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAV 149 (177)
T ss_dssp HCSEEEEESCCCTTTTTTT--TTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSCCC
T ss_pred ccCceEEeeccCCCcccee--ccccccchheEEecccccCCcccCceEEEeCHHHHHHHHHHhhhhc
Confidence 9999999999997555432 3667789999999999999999999999999999999999887643
|
| >d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.96 E-value=1.6e-29 Score=240.23 Aligned_cols=146 Identities=23% Similarity=0.325 Sum_probs=135.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhh
Q 040733 254 KEPDELALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAV 333 (643)
Q Consensus 254 ~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l 333 (643)
+.|+++.+++++++|.+||||+|++|+|+.++.+++.+|||++|+||++|++|+|+||++||+++|++|.+++..++.++
T Consensus 13 p~pd~~~i~~~~~~L~~A~rPvii~G~G~~~a~~~l~~lae~~~~Pv~tt~~~~g~~~~~hp~~~G~~G~~~~~~~~~~i 92 (183)
T d2ez9a1 13 PEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEAL 92 (183)
T ss_dssp CBCCHHHHHHHHHHHHHCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCCCCSSSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEcCCcccchHHHHHHhhccceEEEeeccccccccccCccccccccccccHHHHhhh
Confidence 45799999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhc
Q 040733 334 NECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESK 401 (643)
Q Consensus 334 ~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~ 401 (643)
++|||||+||++++++.++. .+..++++||||+|+.++++++++++.|++|++.+|++|++.+..+
T Consensus 93 ~~aDlil~vG~~l~~~~~~~--~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~ 158 (183)
T d2ez9a1 93 AQADVVLFVGNNYPFAEVSK--AFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSER 158 (183)
T ss_dssp HHCSEEEEESCCCTTTTTTT--TTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCCC
T ss_pred hccCceEEeecccCccccee--ecccccchheeeccHHHHhhcCCCCeEEEECHHHHHHHHHHHhhhc
Confidence 99999999999998766643 3566789999999999999999999999999999999999887653
|
| >d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.96 E-value=1.1e-29 Score=240.74 Aligned_cols=164 Identities=25% Similarity=0.340 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCccccc-----CCCCcHHH
Q 040733 257 DELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMV-----GMFGTVYA 329 (643)
Q Consensus 257 ~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~-----g~~~~~~~ 329 (643)
.++++++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|++|||+||++||+|+|++ |..+...+
T Consensus 5 ~~~~i~~a~~lL~~AkrPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~~kg~~p~~hp~~~G~~~~~~~G~~~~~~~ 84 (177)
T d2ihta1 5 WQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPAL 84 (177)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHhCCCEEEEECcCcchhhhHHHHHHHhhcceEEEEeccccccCCCCcccceeeeeeeccccccccHHH
Confidence 478899999999999999999999996 67899999999999999999999999999999999987 45567788
Q ss_pred HHhhhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCCh
Q 040733 330 NYAVNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDF 409 (643)
Q Consensus 330 ~~~l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~ 409 (643)
++++++||+||+||++++++.+..+..+.+++++||||+|+.++++++++++.|++|++.+|++|.+.+.......+.+.
T Consensus 85 ~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~k~I~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~ 164 (177)
T d2ihta1 85 QTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDI 164 (177)
T ss_dssp HHHHTTCCEEEEETCCGGGCCCHHHHCCSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTTTCCCCCCCCC
T ss_pred HHHhccCCceEEecccccccccccccccCCccceeEEcCCHHHhCCccCCCeEEEeCHHHHHHHHHHHhhhccccCHHHH
Confidence 99999999999999999887776656677788999999999999999999999999999999999988876655445566
Q ss_pred hHHHHHHHHHH
Q 040733 410 SAWREELHEQK 420 (643)
Q Consensus 410 ~~w~~~~~~~~ 420 (643)
..|++++.+++
T Consensus 165 ~~~~~~~~e~~ 175 (177)
T d2ihta1 165 EPLRARIAEFL 175 (177)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 78888887765
|
| >d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.2e-29 Score=234.61 Aligned_cols=158 Identities=34% Similarity=0.577 Sum_probs=142.7
Q ss_pred HHHHHHHHhCCCcEEEEcCCch---hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHhhhcCCE
Q 040733 262 RQTLKLIVESKNPVLCVGGGCL---NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYAVNECDL 338 (643)
Q Consensus 262 ~~~~~~L~~AkrPvIl~G~g~~---~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDl 338 (643)
++++++|++||||+|++|+|+. ++.+++++|||++|+||++|++|+|+||++||+++|..|..+...++.+++++|+
T Consensus 1 nkaa~lL~~AkrPvii~G~G~~~~~~a~~~l~~lae~~g~Pv~tt~~~~g~~~~~hp~~~G~~g~~~~~~a~~~~~~~Dl 80 (171)
T d1t9ba1 1 NKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADL 80 (171)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSE
T ss_pred CHHHHHHHHCCCeEEEECcChhhhhhHHHHHHHHHHhcCCceeecccccccccCCcccccccccccccHHHHhhhhcccc
Confidence 4789999999999999999984 4678999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCccCccccCccccc---------cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCCh
Q 040733 339 LLAAGVRFNERMTSKLEDF---------ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDF 409 (643)
Q Consensus 339 vL~vG~~~~~~~t~~~~~~---------~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~ 409 (643)
||++|+++++..+..+..| ..+.++||||+|+.++++++++++.|++|++.+|++|++.+.. ....
T Consensus 81 vl~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~iI~Id~d~~el~~~~~~d~~i~~D~~~~l~~L~~~l~~-----~~~~ 155 (171)
T d1t9ba1 81 IIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFP-----VKER 155 (171)
T ss_dssp EEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSCC-----CCCC
T ss_pred eeecccccccccccccchhhhhhhhcccCCCceEEEEeCCccccCCcccCceeEEEcHHHHHHHHHHhccc-----ccCc
Confidence 9999999998888665433 4577999999999999999999999999999999999877653 2345
Q ss_pred hHHHHHHHHHHHhCC
Q 040733 410 SAWREELHEQKKKYP 424 (643)
Q Consensus 410 ~~w~~~~~~~~~~~~ 424 (643)
.+|.+++.+.|++||
T Consensus 156 ~~W~~~~~~~k~~~p 170 (171)
T d1t9ba1 156 SEWFAQINKWKKEYP 170 (171)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCc
Confidence 789999999999886
|
| >d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.95 E-value=1.4e-27 Score=226.30 Aligned_cols=143 Identities=24% Similarity=0.323 Sum_probs=131.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCC-CCcccccCCCCcHHHHHh
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTD-ELCLRMVGMFGTVYANYA 332 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~h-pl~lG~~g~~~~~~~~~~ 332 (643)
++++++++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|++|+|+||++| |+++|+.|.+++..++++
T Consensus 5 a~~~~i~~~~~~L~~AkrPvii~G~g~~~~~a~~~l~~lae~~giPv~tt~~~~g~~~~~~~~~~~G~~g~~~~~~~~~~ 84 (179)
T d1ozha1 5 APDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRL 84 (179)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECSSBTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCEEEEEchhhChhhHHHHHHHHHHhccceEEeecccccccccccccccccccCccccHHHhhh
Confidence 3567899999999999999999999987 6889999999999999999999999999986 799999999999999999
Q ss_pred hhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 333 VNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 333 l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
+++||+||+||+++.++.++.+ +.+++++||||+|+.++++++++++.|++|++.+|++|++.++.
T Consensus 85 ~~~aDlvl~vG~~~~~~~~~~~--~~~~~kvI~id~d~~~i~~~~~~d~~i~gD~~~~l~~L~~~l~~ 150 (179)
T d1ozha1 85 LQLADLVICIGYSPVEYEPAMW--NSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDH 150 (179)
T ss_dssp HHHCSEEEEESCCGGGSCGGGT--CCSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCCS
T ss_pred hccccceEEEcccccccccccc--ccccccEEEEecchhhcCCccCCCeEEEeCHHHHHHHHHHhhhc
Confidence 9999999999999988777654 34678999999999999999999999999999999999988765
|
| >d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.94 E-value=1.8e-26 Score=217.84 Aligned_cols=156 Identities=26% Similarity=0.393 Sum_probs=133.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCCCCcHHHHHh
Q 040733 255 EPDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGMFGTVYANYA 332 (643)
Q Consensus 255 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~~~~~~~~~~ 332 (643)
.|+++.+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|++|+|+||++||++.|.. .+.+
T Consensus 3 ~P~~~~l~~a~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~~~g~~~~~h~~~~~~~-------~~~~ 75 (175)
T d2ji7a1 3 IPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAAT-------RAFA 75 (175)
T ss_dssp CCCHHHHHHHHHHHHTCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTBTTBCTTCTTBCGGG-------HHHH
T ss_pred CcCHHHHHHHHHHHHhCCCEEEEECCCccccccHHHHHHHhhhceeeeeccccccccCCCccccccccc-------ccce
Confidence 36899999999999999999999999987 67899999999999999999999999999999997654 3567
Q ss_pred hhcCCEEEEecCccCccccCccc-ccc-CCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcCCCCCCChh
Q 040733 333 VNECDLLLAAGVRFNERMTSKLE-DFA-TRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKGVGFMFDFS 410 (643)
Q Consensus 333 l~~aDlvL~vG~~~~~~~t~~~~-~~~-~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~ 410 (643)
+++|||||+||++++++.+.++. .|. +++++||||+|+.+++++++.++.|++|++.+|++|.+.++... ....
T Consensus 76 l~~aDlii~vG~~~~~~~~~~~~~~~~~~~~kvI~Id~d~~~i~~~~~~~l~i~~D~~~~l~~L~~~l~~~~----~~~~ 151 (175)
T d2ji7a1 76 LAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAP----KADA 151 (175)
T ss_dssp HHHCSEEEEESCCSSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHTTTCC----CSCH
T ss_pred eecccceeeeeccCCcccccccccccCCccceEEEEeccchhhccccCcCceEEEcHHHHHHHHHHHhccCC----CCCH
Confidence 89999999999999887664432 343 46799999999999999999999999999999999999886532 2346
Q ss_pred HHHHHHHHHHH
Q 040733 411 AWREELHEQKK 421 (643)
Q Consensus 411 ~w~~~~~~~~~ 421 (643)
.|.+++++..+
T Consensus 152 ~w~~~~~~~~~ 162 (175)
T d2ji7a1 152 EWTGALKAKVD 162 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78877765443
|
| >d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=8e-26 Score=214.09 Aligned_cols=144 Identities=21% Similarity=0.302 Sum_probs=122.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHh
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYA 332 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~ 332 (643)
++++.+++++++|.+||||+|++|+|+. ++.+++++|+|++|+||++|++|||+||++||+|+|.+ |..+...++++
T Consensus 15 ~~~~~i~~~~~~l~~AkrPvii~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~e~hp~~~G~~~g~~~~~~~~~~ 94 (179)
T d1pvda1 15 SEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSISEQHPRYGGVYVGTLSKPEVKEA 94 (179)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEECGGGTTTSTHHHHHHHHHHHCCCEEECGGGTTSSCTTSTTEEEECCSTTSCHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEecccchhhhHHHHHHHHHhhCceEEecccccccccccccccccccccccCCHHHHHH
Confidence 4568899999999999999999999996 68899999999999999999999999999999999975 88888999999
Q ss_pred hhcCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 333 VNECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 333 l~~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+++||+||+||++++++.++.|..+.++.++||||.|+.++++++..++.+.+|++.++++|.+..+
T Consensus 95 ~~~aDlvl~lG~~~~d~~t~~~~~~~~~~~iI~i~~d~~~i~~~~~~~v~i~~~l~~ll~~l~~~~~ 161 (179)
T d1pvda1 95 VESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTNIADAAK 161 (179)
T ss_dssp HHTCSEEEEESCCCCC----------CCCEEEEEETTEEEETTEEEETCCHHHHHHHHHHHHHHHTT
T ss_pred hhcCCEEEEEcCCccccccCcCcccCCCCcEEEEeCCHHHhCCcccCCccHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888888888899999999999999988899888888777777765543
|
| >d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.92 E-value=1.9e-25 Score=207.76 Aligned_cols=139 Identities=17% Similarity=0.216 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCccccc-CCCCcHHHHHhhh
Q 040733 258 ELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMV-GMFGTVYANYAVN 334 (643)
Q Consensus 258 ~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~-g~~~~~~~~~~l~ 334 (643)
+..+++++++|++||||+||+|.|+. ++.+++++|+|++++||++|++|||+||++||+|+|++ |..++..++++++
T Consensus 16 ~a~~~~a~~~l~~AkrP~il~G~gv~~~~a~~~l~~l~e~~~iPv~tt~~gkg~i~e~~p~~~G~~~G~~~~~~~~~~i~ 95 (161)
T d1ovma1 16 KAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIE 95 (161)
T ss_dssp HHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEECcCcChhhhHHHHHHHHHhcCccEEEcCCcCCcccccccccccccCCCcCcHHHHHHHh
Confidence 34566778899999999999999997 78999999999999999999999999999999999986 6778888999999
Q ss_pred cCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 335 ECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 335 ~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
++|+||+||++++++.++.|..+.++.++||||+|+.++++++.+++.+ ..+|++|.+.+++
T Consensus 96 ~aDliL~iG~~l~~~~t~~~~~~~~~~kiI~id~d~~~i~~~~~~~v~l----~~~l~~L~e~l~~ 157 (161)
T d1ovma1 96 GADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGIPM----NQAIETLVELCKQ 157 (161)
T ss_dssp TSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEETTEEEESCCH----HHHHHHHHHHHHT
T ss_pred cCCEEEEECCcccccccccccccCCCceEEEEeCCHHHhCCeeecCccH----HHHHHHHHHHHHh
Confidence 9999999999999998888877777889999999999999988888765 6677777776654
|
| >d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.91 E-value=3.6e-25 Score=208.79 Aligned_cols=139 Identities=22% Similarity=0.284 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceeecCCCCCCCCCCCCCcccc-cCCCCcHHHHHhhh
Q 040733 258 ELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRM-VGMFGTVYANYAVN 334 (643)
Q Consensus 258 ~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~-~g~~~~~~~~~~l~ 334 (643)
+..+++++++|.+||||+|++|+|+. ++.+++.+|+|++|+||++|++|||+||++||+|+|+ .|..++..++++++
T Consensus 9 ~~~v~~~~~~l~~AkrPvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~i~e~~p~~~G~~~G~~~~~~~~~~~~ 88 (175)
T d1zpda1 9 NAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFPEENALYIGTSWGEVSYPGVEKTMK 88 (175)
T ss_dssp HHHHHHHHHHHTTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCCEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECcCccccchHHHHHHHHHhhceeEEeccccccCCCcccccccCCcccccchHHHHHHHh
Confidence 46788899999999999999999997 6789999999999999999999999999999999998 58888888899999
Q ss_pred cCCEEEEecCccCccccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 335 ECDLLLAAGVRFNERMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 335 ~aDlvL~vG~~~~~~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
+||+||++|++++++.++.|..+.++.++||||+|+.++++.+.+++ +++++|++|.+.++.
T Consensus 89 ~aDlvl~lG~~~~d~~t~~~~~~~~~~~~I~i~~d~~~i~~~~~~~v----~~~~~l~~L~~~l~~ 150 (175)
T d1zpda1 89 EADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSV----HLKDYLTRLAQKVSK 150 (175)
T ss_dssp HCSEEEEESCCCBTTTTTTTTCCCCGGGEEEECSSEEEETTEEEESC----CHHHHHHHHHHHCCC
T ss_pred cCceEEEEcCccCccccCCccccCCCCeEEEEeCchheEcccccCCc----CHHHHHHHHHHHhcc
Confidence 99999999999999999888877778899999999999998776655 568899999887653
|
| >d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=1.8e-23 Score=194.28 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=128.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCch--hhHHHHHHHHHHhCCceee-cCCCCCCCCCCCCCcccccCCCCcHHHHHh
Q 040733 256 PDELALRQTLKLIVESKNPVLCVGGGCL--NSSEELRKFVGLTGIPVTC-TTMGLGLFPCTDELCLRMVGMFGTVYANYA 332 (643)
Q Consensus 256 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~--~~~~~l~~lae~lg~PV~t-t~~gkg~~~~~hpl~lG~~g~~~~~~~~~~ 332 (643)
++++++++++++|++||||+|++|.|++ ++.+++.+|+|++|+||++ ++++++++|++||+++|++|+ +....+++
T Consensus 4 ~~~~~ld~~~~~l~~A~rPvii~G~g~~~~~~~~~l~~lae~l~~pv~~t~~~~~~~~~~~~p~~~G~~~~-~~~~~~~~ 82 (160)
T d1q6za1 4 LNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPA-GIAAISQL 82 (160)
T ss_dssp CCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSCSBCCSCTTSTTEEEECCS-CHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCEEEEECcCccccccchHHHHHHHhcCceEEeeccccccccccccccccccccc-CcHHHHHH
Confidence 5899999999999999999999999987 6789999999999999865 568999999999999999875 66778999
Q ss_pred hhcCCEEEEecCccCccccCcc-ccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhhcC
Q 040733 333 VNECDLLLAAGVRFNERMTSKL-EDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILESKG 402 (643)
Q Consensus 333 l~~aDlvL~vG~~~~~~~t~~~-~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~ 402 (643)
++++|+||++|+++.++.+..+ ..+.+++++||||+|+.+++++ +.++.|++|++.+|++|++.++...
T Consensus 83 l~~aDlil~lG~~l~~~~~~~~~~~~~~~~~ii~v~~d~~~~~~~-~~~~~i~~D~~~~l~~L~~~l~~~~ 152 (160)
T d1q6za1 83 LEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARA-PMGDAIVADIGAMASALANLVEESS 152 (160)
T ss_dssp HTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHC-SSSEEEESCHHHHHHHHHHHSCCCC
T ss_pred HhcCCeEEEEecccccccccccccccccCceEEEeeCCHHHhCCC-CCCeeEEeCHHHHHHHHHHhccccC
Confidence 9999999999999988877544 3456678999999999999874 5889999999999999998876543
|
| >d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: ACDE2-like domain: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.78 E-value=3.7e-21 Score=177.09 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHHHHHHhCCceeecC------CCCCCCCCCCCCcccccCCCCcHHHHHh
Q 040733 259 LALRQTLKLIVESKNPVLCVGGGCLNSSEELRKFVGLTGIPVTCTT------MGLGLFPCTDELCLRMVGMFGTVYANYA 332 (643)
Q Consensus 259 ~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~l~~lae~lg~PV~tt~------~gkg~~~~~hpl~lG~~g~~~~~~~~~~ 332 (643)
+.+++++++|++||||+|++|+|+.++..++.++++++++||++|+ +|||++|++||+++|++|.++...+|..
T Consensus 7 e~~~~~a~~i~~AkrPvii~G~g~~~~~~e~~~~~~~~~ipv~~T~~~~~~~~gkg~~~~~~~~~~G~~g~~g~~~~n~a 86 (158)
T d1ytla1 7 EKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKG 86 (158)
T ss_dssp CCHHHHHHHHHHCSSEEEEECSCCCHHHHHHHHHHHTSSSEEEEETTHHHHHHHTTCGGGSEEECHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECcChHHhHHHHHHHHHHhCcCEEecccccccccccCCCCCCCccccccccccCcHHHHHH
Confidence 4588999999999999999999998888889999999999999984 6999999999999999887776666655
Q ss_pred h---hcCCEEEEecCccCc--cccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 333 V---NECDLLLAAGVRFNE--RMTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 333 l---~~aDlvL~vG~~~~~--~~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
+ .+|||||++|++++. +..+.+..|.++.++|+||.+.........+ .+..+..++++.|.+.++
T Consensus 87 ~~~~~~aDLvi~iG~~~~~~~~~~~~~~~~~~~~k~I~Id~~~~~~~~~~~~--~l~~~~~~~~~~L~~ll~ 156 (158)
T d1ytla1 87 FDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFG--NLWKKEEDYLKLLDEILA 156 (158)
T ss_dssp TTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECSSSCCTTSSEECC--CCGGGHHHHHHHHHHHHH
T ss_pred hhcccCcCEEEEECCcccchhhccccccccCCCCeEEEEcCCccccccccch--hhhhhHHHHHHHHHHHHh
Confidence 5 499999999999863 3445556688899999998775443222122 233566777777766554
|
| >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR PP module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI species: Desulfovibrio africanus [TaxId: 873]
Probab=99.11 E-value=4e-10 Score=116.49 Aligned_cols=186 Identities=15% Similarity=0.118 Sum_probs=128.5
Q ss_pred cCCCCCCCHHHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCC-------CeEEecCC--CcccccchHHHHHHH-
Q 040733 428 KTFGEEIPPQYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRA-------RQLLTSSG--FGSMGFGLPAAMGAA- 497 (643)
Q Consensus 428 ~~~~~~i~~~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p-------~~~~~~~~--~g~mG~glpaAiGaa- 497 (643)
...+..|...-.++.|.+++.+ +.+|+..+|++..|+..+-..+-. ..|..+.- -...|+|+-.|+-..
T Consensus 24 ~gAC~GCGet~~~kll~ql~g~-r~vIanatGCsSi~g~~~P~tp~~~~~~g~gpaW~nsLFednaefg~G~~la~~~~r 102 (447)
T d2c42a2 24 SGACSGCGETPYVRVITQLFGE-RMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARR 102 (447)
T ss_dssp CSCCTTCSSHHHHHHHHHHHGG-GEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHhCC-cEEEEECCcccccccCCCCCCCcccccCCCCCccccccccchHHHHHHHHHHHHHHH
Confidence 3456778888899999999988 999999999999998766432211 14554321 123344433332100
Q ss_pred ----------------------------------------------Hh----------------CCCCeEEEEecCcccc
Q 040733 498 ----------------------------------------------VA----------------NPGAIVVDIDGDGSFI 515 (643)
Q Consensus 498 ----------------------------------------------lA----------------~p~~~Vv~i~GDGsf~ 515 (643)
+. .+++.||+|.|||.|.
T Consensus 103 ~~~~~~v~~~~~~~~~~~l~~~l~~wl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~d~~~k~~V~~~gGDG~~~ 182 (447)
T d2c42a2 103 THLADLAAKALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAY 182 (447)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccchHHHHhhhhhhcccCCcEEEEecCccHh
Confidence 00 1347899999999988
Q ss_pred CC-HHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEE-Ee---CC
Q 040733 516 MN-LQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAA-RV---TK 590 (643)
Q Consensus 516 m~-~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~-~V---~~ 590 (643)
.. ++.|..+.+.|.++++||+||..|+|...+.......... +. -.|........|+..++.++|+.++ ++ .+
T Consensus 183 dIG~~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~-t~-ttp~Gk~~~kkdi~~ia~a~g~~YVA~~s~~~~ 260 (447)
T d2c42a2 183 DIGYGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAV-AK-FAAAGKRTGKKDLARMVMTYGYVYVATVSMGYS 260 (447)
T ss_dssp TTTHHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCC-BB-TBTTCCSSCCCCHHHHHHTTSSSEEEEECTTTC
T ss_pred hcChHHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCee-cc-cccCCCcCCCCCHHHHHHHCCCceEEEEeCCCC
Confidence 75 8999999999999999999999999975322211110000 00 0111122345699999999999876 54 35
Q ss_pred hhHHHHHHHHHHhCCCcEEEEEEeCC
Q 040733 591 KKDVRAAIQLMLETPGPYLLDVMVSY 616 (643)
Q Consensus 591 ~~eL~~al~~al~~~gp~lIeV~v~~ 616 (643)
.+++.+++++|++.+||.+|++..+-
T Consensus 261 ~~~l~kaikeA~~~~GpS~I~~~sPC 286 (447)
T d2c42a2 261 KQQFLKVLKEAESFPGPSLVIAYATC 286 (447)
T ss_dssp HHHHHHHHHHHHHSSSCEEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEeecCC
Confidence 68999999999999999999998753
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=98.87 E-value=4.5e-09 Score=107.99 Aligned_cols=117 Identities=22% Similarity=0.293 Sum_probs=87.4
Q ss_pred CcccccchHHHHHHHHh----CCCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccc
Q 040733 483 FGSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANR 556 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA----~p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~ 556 (643)
.+.+|.++|-|+|+|++ ..+..+|++.|||+..-. +-| |..|..+++|+++||-||+ |++-...+..
T Consensus 138 ~~ivg~~~p~a~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~-~aist~~~~~------ 210 (362)
T d1umda_ 138 ASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-YAISVDYRHQ------ 210 (362)
T ss_dssp CSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-EETTEEHHHH------
T ss_pred cccccccchHHHHHHHhhhcccccceeeeeccCCcccCCchHHHHHHhhhccCCeeeeeeecc-cccccccccc------
Confidence 35678889999998887 457889999999999764 444 7888899999988888876 7764222211
Q ss_pred cccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHH----HhCCCcEEEEEEeCCCC
Q 040733 557 ANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLM----LETPGPYLLDVMVSYQE 618 (643)
Q Consensus 557 ~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a----l~~~gp~lIeV~v~~~~ 618 (643)
....++.+.|++||+++++|+ ++.++.++++++ .+.+||+|||+.+.|-.
T Consensus 211 ------------~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~~~Ai~~~R~g~gP~lIE~~tyR~~ 266 (362)
T d1umda_ 211 ------------THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYG 266 (362)
T ss_dssp ------------CSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCS
T ss_pred ------------cccchhhhhhhhheeeeeEeccchHHHHHHHHHHHHHHHHhcCCCEEEEccccccc
Confidence 124577899999999999995 555555555544 45689999999997753
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=98.81 E-value=6.9e-09 Score=107.58 Aligned_cols=118 Identities=22% Similarity=0.230 Sum_probs=85.8
Q ss_pred CcccccchHHHHHHHHh----CCCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccc
Q 040733 483 FGSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANR 556 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA----~p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~ 556 (643)
.+.+|..+|-|+|++++ ..++.||+++|||+..-. +.| |.-|..+++|+++||-||+ |+|-... .
T Consensus 180 s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvifv~eNN~-~aist~~-------~- 250 (407)
T d1qs0a_ 180 SGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQ-WAISTFQ-------A- 250 (407)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECS-EETTEEG-------G-
T ss_pred ccccccccchhhhhHHHHhhccCcceecccccccccccchHHHHHHHHhccCcceEEEEEEec-ccccccc-------h-
Confidence 36677788888888876 346789999999998775 444 7888899999988888876 5653100 0
Q ss_pred cccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHH----HhCCCcEEEEEEeCCCC
Q 040733 557 ANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLM----LETPGPYLLDVMVSYQE 618 (643)
Q Consensus 557 ~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a----l~~~gp~lIeV~v~~~~ 618 (643)
.. .....++.+.+++||+++++|+ +..++.++++++ .+.+||+|||+.+.+-.
T Consensus 251 -~~--------~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~ 309 (407)
T d1qs0a_ 251 -IA--------GGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAG 309 (407)
T ss_dssp -GG--------TTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCS
T ss_pred -hh--------hccchhHHHHHHhcCcceEEeccccHHHHHHHHHHHHHHHhcCCCceEEEEeeecCC
Confidence 00 0123568999999999999995 555555555554 45688999999998753
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.78 E-value=1.3e-08 Score=104.31 Aligned_cols=117 Identities=22% Similarity=0.308 Sum_probs=86.7
Q ss_pred CcccccchHHHHHHHHh----CCCCeEEEEecCccccCC-HH-HHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccc
Q 040733 483 FGSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFIMN-LQ-ELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANR 556 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA----~p~~~Vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~ 556 (643)
.+.+|..+|.|+|++++ ..++.||+++|||+..-. +- .|..|..+++|+++||-||+ |++-.
T Consensus 138 ~~ivG~~~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~-~aist----------- 205 (365)
T d1w85a_ 138 QIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR-FAIST----------- 205 (365)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECS-EETTE-----------
T ss_pred ccccCccccchhhHHhhhhhcccCCceeeeccCCcccchhHHHHHHHhhhcccCceEEEEEec-ccccc-----------
Confidence 36778888888888876 456889999999998764 44 48888999999999888885 66521
Q ss_pred cccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHH----hCCCcEEEEEEeCCCC
Q 040733 557 ANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLML----ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 557 ~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al----~~~gp~lIeV~v~~~~ 618 (643)
|........++..-+++||+++++|+ ++.++.+++++|+ +.+||+|||+.+.+-.
T Consensus 206 -------~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~a~~~A~~~~R~g~gP~lie~~tyR~~ 266 (365)
T d1w85a_ 206 -------PVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 266 (365)
T ss_dssp -------EGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSS
T ss_pred -------cccccccccchhhhcccccCceEEEecchhHHHHHHHHHHHHHhhcCCccEEEEeeccccc
Confidence 00001234577888999999999996 5556666655554 4678999999998753
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.3e-08 Score=105.41 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=88.0
Q ss_pred CcccccchHHHHHHHHh----CCCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccc
Q 040733 483 FGSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANR 556 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA----~p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~ 556 (643)
.+.+|..+|.|+|++++ ..++-+|+++|||+..-. +.| |..|..+++|+++||-||+ |++-.. .
T Consensus 156 ~~ivg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~-yaist~---------~ 225 (395)
T d2bfda1 156 SSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG-YAISTP---------T 225 (395)
T ss_dssp CSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECS-EETTEE---------G
T ss_pred cccccccccHHHHHHHHhhhcCcccccccccCCCCccchhHHHHHHHHhhcCCceEEEEEecc-cccccc---------c
Confidence 36678889999998886 456889999999999874 444 8888999999988877776 565310 0
Q ss_pred cccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHHH----hCCCcEEEEEEeCCCC
Q 040733 557 ANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLML----ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 557 ~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~al----~~~gp~lIeV~v~~~~ 618 (643)
.......++.+.|++||+++++|+ ++.++.+++++++ +.+||+|||+.+.|-.
T Consensus 226 ---------~~~~~~~~i~~ra~~~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~ 284 (395)
T d2bfda1 226 ---------SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIG 284 (395)
T ss_dssp ---------GGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC
T ss_pred ---------chhhcchhHHHhhhccccceeEEecCcHHHHHHHHHHhhhhhhccCCceEEEEeeecCC
Confidence 001234578999999999999994 6667666666655 4689999999998764
|
| >d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR Pyr module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I species: Desulfovibrio africanus [TaxId: 873]
Probab=98.74 E-value=5.4e-08 Score=95.07 Aligned_cols=152 Identities=10% Similarity=0.039 Sum_probs=113.5
Q ss_pred CcHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhh-----------CCCeEEecCChhHHHHHHHHHHHHhCCcEEEEE
Q 040733 70 RKGADIIVEALERQGVTTVFAYPGGASIEIHQSLTR-----------SNIRSILPRHEQGGIFAAEGYARSSGTPGVCLV 138 (643)
Q Consensus 70 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~-----------~~i~~i~~~hE~~A~~~A~Gyar~sg~~gv~~~ 138 (643)
++|.++++.... .|++.+++||++...+|.+.|.+ .++.++..-+|.+|+.+|.|++.+..| ++..
T Consensus 7 ~~GneAva~~a~-a~~~v~~~YPiTPss~i~e~l~~~~~~g~~~~~~~~~~~~~~e~E~~A~~~~~Ga~~aG~r--~~t~ 83 (257)
T d2c42a1 7 TDGNTATAHVAY-AMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGAL--TTTF 83 (257)
T ss_dssp EEHHHHHHHHHH-HHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCC--EEEE
T ss_pred cchHHHHHHHHH-HcCCEEEEECCCCccHHHHHHHHHHHcCCcccCCCceEEEEecccchhHHHHHHHHhcCCC--eEEE
Confidence 579999999765 79999999999999999998864 126999999999999999999976554 4556
Q ss_pred ccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCCCCCccCHHHHh-hccceee-eEeCCcCcHHHHHHHHHHHhhc
Q 040733 139 SSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQEIPVVEVT-RYMTKHN-YLVLDVDDIPRIIKEAFFIATS 216 (643)
Q Consensus 139 t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~-~~~tk~~-~~v~~~~~i~~~l~~A~~~A~s 216 (643)
|+|||+.-+...|.-|...++|+++...+++....+. ..| .||-+++ .--+.|- ....+++++.+....||++|..
T Consensus 84 ts~~Gl~~m~e~l~~a~~~~~P~V~~v~~r~~~~~~~-~~~-~~q~d~~~~~~~g~~~l~~~s~QEa~d~~~~A~~lae~ 161 (257)
T d2c42a1 84 TASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHAL-SIF-GDHQDIYAARQTGFAMLASSSVQEAHDMALVAHLAAIE 161 (257)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSB-CCS-CCSHHHHTTTTSSCEEEECCSHHHHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHHhcCCceEEEEEecCCCCCCC-ccc-cchHHHHHHHhcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 7999999889999999999999877776654322111 111 1232322 2233333 3456788899999999999976
Q ss_pred CCCCeEEEEcc
Q 040733 217 GRPGPVLIDIP 227 (643)
Q Consensus 217 ~~~GPV~i~iP 227 (643)
.+ -||.+...
T Consensus 162 ~~-~Pv~~~~D 171 (257)
T d2c42a1 162 SN-VPFMHFFD 171 (257)
T ss_dssp HC-CCEEEEEE
T ss_pred hC-CCEEEEec
Confidence 55 48887653
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=9.9e-08 Score=97.79 Aligned_cols=114 Identities=25% Similarity=0.318 Sum_probs=80.9
Q ss_pred CcccccchHHHHHHHHh----CCCCeEEEEecCccccCC-HHH-HHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccc
Q 040733 483 FGSMGFGLPAAMGAAVA----NPGAIVVDIDGDGSFIMN-LQE-LAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANR 556 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA----~p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~ 556 (643)
.+.+|..+|-|+|+|++ ..++.|++++|||+..-. +-| |..|..+++|+++||-||+ |++....+..
T Consensus 135 ~~ivg~~~p~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~-yaist~~~~~------ 207 (361)
T d2ozla1 135 NGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR-YGMGTSVERA------ 207 (361)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECS-EETTEEHHHH------
T ss_pred cccccccchhHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhhhhhhccCceEEEEEeCC-cccCCCchhc------
Confidence 46778889999999887 467899999999999874 444 7888999999888888875 6664222211
Q ss_pred cccccCCCCCCCCCCCCHHHHHhHCCCCEEEeC--ChhHHHHHHHHH----HhCCCcEEEEEEeCCC
Q 040733 557 ANSFLGDPLRKSEIFPDMLKFAEACGIPAARVT--KKKDVRAAIQLM----LETPGPYLLDVMVSYQ 617 (643)
Q Consensus 557 ~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a----l~~~gp~lIeV~v~~~ 617 (643)
....++.+ .++|+++++|+ ++.++.++++++ .+.+||+|||+.+.|-
T Consensus 208 ------------~~~~~~~~--~~~~~~~~~vdGnD~~av~~a~~~A~~~~R~g~gP~liE~~TyR~ 260 (361)
T d2ozla1 208 ------------AASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRY 260 (361)
T ss_dssp ------------CSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCS
T ss_pred ------------cccccccc--cccccceEEeccCCchHHHHHHHHHHHHHhccCCCEEEEEeeecC
Confidence 01123322 46678888884 444555555554 4568899999999875
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=1.5e-07 Score=95.20 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=91.2
Q ss_pred CcccccchHHHHHHHHhC--------------CCCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVAN--------------PGAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~--------------p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|++|.|++.|+|.|++. .+++|+|++|||.++-. ...+..|.+++|+-+|+|+||+.+.+..
T Consensus 112 tGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~~kL~nLi~i~D~N~~~~~g- 190 (331)
T d2r8oa2 112 TGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDG- 190 (331)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE-
T ss_pred cCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccchhHhhhhcchhcccceeeHHhhhhhcccc-
Confidence 489999999999999873 25789999999999864 5559999999998777888877654311
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEe---CChhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARV---TKKKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
.... ....|+.+-.++||.+.+++ ++.+++.+|++++.+ .++|.+|.+.+-...
T Consensus 191 ---------~~~~---------~~~~~~~~rf~afGw~vi~~~dghd~~~i~~A~~~a~~~~~kP~~Ii~~TikGk 248 (331)
T d2r8oa2 191 ---------HVEG---------WFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGF 248 (331)
T ss_dssp ---------EGGG---------TCCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred ---------cccc---------ccchhHHHHHHHcCCeeecccccchHHHHHHHHHHHHhhcCCCccceeeeeeec
Confidence 0001 12358889999999998764 566788899998876 688999999997654
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=98.37 E-value=5.4e-07 Score=91.17 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=88.5
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
-|++|.|++.|+|.|++.+ +++|+||+|||.++-. ...+..|.+++|+-+|+|+||+...+-.
T Consensus 113 tGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~~idg- 191 (336)
T d1r9ja2 113 TGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDG- 191 (336)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSS-
T ss_pred ccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHHHHHHHHHHHHhhcCCEEEEEecccccccc-
Confidence 4899999999999999842 4679999999999874 4558999999998778888777643210
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCCh----hHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKK----KDVRAAIQLMLE-TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~----~eL~~al~~al~-~~gp~lIeV~v~~~~~ 619 (643)
. +. ....-|+.+-.++||.+...|..- +.+..+++++.. .++|.+|.+.+-....
T Consensus 192 ---------~--~~-------~~~~~d~~~rf~afGW~vi~Vdgg~~d~~~~~~~~~~a~~~~~kP~~Ii~kTiiG~G 251 (336)
T d1r9ja2 192 ---------S--TS-------LSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQTTTIGFG 251 (336)
T ss_dssp ---------B--GG-------GTCCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTTT
T ss_pred ---------c--cc-------ccchhHHHHHHHHhccceEEEecCchHHHHHHHHhhhhhhccCCCccceEEEEEeec
Confidence 0 00 012358999999999999999542 345556666554 5689999999987754
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=98.30 E-value=8.4e-07 Score=89.73 Aligned_cols=117 Identities=22% Similarity=0.245 Sum_probs=89.3
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
-|++|.|++.|+|.+++.. +++|+|++|||.++-. ...+..|.+++|+-+++|+|++...+-
T Consensus 117 tGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel~EG~~wEA~~~A~~~~L~NLi~i~D~N~~~~d-- 194 (338)
T d1itza1 117 TGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISID-- 194 (338)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT--
T ss_pred CCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCccccchHHHHHHHhHhhhhhccceeeeehhhccccc--
Confidence 4889999999999998732 5689999999999874 556899999999766666666654331
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCC----hhHHHHHHHHHHh-CCCcEEEEEEeCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK----KKDVRAAIQLMLE-TPGPYLLDVMVSYQE 618 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~----~~eL~~al~~al~-~~gp~lIeV~v~~~~ 618 (643)
+ .... ....|+.+-.++||.+...+.+ .+++..+++++.. .++|++|.+.+-...
T Consensus 195 ------g--~~~~---------~~~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~~a~~~a~~~~~kPt~Iia~TikGk 254 (338)
T d1itza1 195 ------G--DTEI---------AFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTTTIGF 254 (338)
T ss_dssp ------E--EGGG---------TCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred ------c--cccc---------ccCCCHHHHHHhcCCeEEEeeCCchhHHHHHHHHHHHHHccCCCceeEeecCccc
Confidence 0 0001 1235899999999999998753 5778899988865 678999999997654
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.26 E-value=1.3e-06 Score=88.14 Aligned_cols=118 Identities=18% Similarity=0.181 Sum_probs=88.1
Q ss_pred CcccccchHHHHHHHHhCC--------------CCeEEEEecCccccCC--HHHHHHHHHhCCCeEEEEEeCCCchhhHH
Q 040733 483 FGSMGFGLPAAMGAAVANP--------------GAIVVDIDGDGSFIMN--LQELAAIKAENIPVKILLINNQYLGMNVE 546 (643)
Q Consensus 483 ~g~mG~glpaAiGaalA~p--------------~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~ 546 (643)
.|++|.|++.|+|.|++.. +++|+|++|||.++=. ...+..|.+++|+=+|+|+|++...+-.
T Consensus 113 tGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~~~L~NLi~i~D~N~~~~dg- 191 (335)
T d1gpua1 113 TGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDG- 191 (335)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE-
T ss_pred CCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhhhccCCEEEEEecccccccc-
Confidence 4899999999999999852 5789999999999874 5558899999997777777777644320
Q ss_pred HHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCC----hhHHHHHHHHHHh-CCCcEEEEEEeCCCCC
Q 040733 547 YEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTK----KKDVRAAIQLMLE-TPGPYLLDVMVSYQEH 619 (643)
Q Consensus 547 ~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~----~~eL~~al~~al~-~~gp~lIeV~v~~~~~ 619 (643)
.... ...-|+.+..++||.+...|.. ..++..++.++.. .++|++|.+.+-....
T Consensus 192 ---------~~~~---------~~~~~~~~~f~a~GW~vi~vdg~~~d~~~~~~~~~~~~~~~~KPt~Iia~TikGkG 251 (335)
T d1gpua1 192 ---------ATSI---------SFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKMTTTIGYG 251 (335)
T ss_dssp ---------EGGG---------TCCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEEECCTTTT
T ss_pred ---------cccc---------cccCCHHHHHHhCCCcEEEEcCCchhHHHHHHHHhhhhcccCCCcceEEeeccCCc
Confidence 0000 1224889999999999999942 3345666666654 5789999999987765
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00025 Score=73.34 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCCeEEEEecCccccC--CHHHHHHHHHhCCCeEEEEEeCCCc
Q 040733 501 PGAIVVDIDGDGSFIM--NLQELAAIKAENIPVKILLINNQYL 541 (643)
Q Consensus 501 p~~~Vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~ 541 (643)
.+.+|++++|||.++= ....+..|.++++.-+|+|+|+|..
T Consensus 165 ~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~ 207 (415)
T d2ieaa2 165 SKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQ 207 (415)
T ss_dssp TTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSB
T ss_pred CCceEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCce
Confidence 4678999999999985 4566999999999766667776654
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=97.03 E-value=0.0087 Score=54.25 Aligned_cols=128 Identities=16% Similarity=0.134 Sum_probs=86.9
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
..+++....-.. +.-+|-|.+... ++++++++.-.|+.-.++.|.+|...++|+++|.-+......- .
T Consensus 40 ~i~~v~~rhE~~---A~~mA~gyar~t-g~~~v~~t~GpG~~N~~~gl~~A~~~~~Pvl~isg~~~~~~~~--------~ 107 (186)
T d1zpda2 40 NMEQVYCCNELN---CGFSAEGYARAK-GAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHA--------A 107 (186)
T ss_dssp TSEEEECSSHHH---HHHHHHHHHHHH-SCEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTT--------T
T ss_pred CceEeeeccccc---eehhhhhhhhcc-ccceeEeeccccchhhhhhhhhhhhcccceEEEecccCccccc--------C
Confidence 466776554333 345777777666 5788888876788877999999999999999999875542211 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~~ 618 (643)
....+..++. ....|..++.+.+-....++++++++.+.+++|+ ..+||+.|||+.|-..
T Consensus 108 ~~~~~~~~~~-----~~~~~~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~PV~l~iP~Dv~~ 171 (186)
T d1zpda2 108 GHVLHHALGK-----TDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIAS 171 (186)
T ss_dssp TCBCTTSCSS-----SCCCHHHHHHGGGCSCEEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEETTSTT
T ss_pred CCcceeecCC-----cchhhhhhccCCceeeeeEcCCHHHHHHHHHHHHHHHhhCCCCEEEECCcchhh
Confidence 0000111111 1223567888889899999999988777776654 4568999999987654
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.01 E-value=0.0079 Score=54.29 Aligned_cols=149 Identities=11% Similarity=0.058 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCCCCeEEE-eCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe-cCcccc
Q 040733 438 YAIQILNELTDDEETIIS-TGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID-GDGSFI 515 (643)
Q Consensus 438 ~~~~~L~~~l~~~d~iv~-~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~-GDGsf~ 515 (643)
.+++.|.+.== +.++. .+.++..+ ...+. +..-+++....-. .+.-+|-|.+... +++.++++ ..-|+.
T Consensus 10 ~l~~~L~~~Gv--~~vFg~pG~~~~~l--~~al~-~~~i~~i~~~hE~---~A~~~A~gyar~t-g~~gv~~~t~GpG~~ 80 (181)
T d1ozha2 10 LVVSQLEAQGV--RQVFGIPGAKIDKV--FDSLL-DSSIRIIPVRHEA---NAAFMAAAVGRIT-GKAGVALVTSGPGCS 80 (181)
T ss_dssp HHHHHHHHHTC--CEEEEECCTTTHHH--HHHGG-GSSSEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECSTHHHH
T ss_pred HHHHHHHHCCC--CEEEEeCcHhHHHH--HHHHH-hhhcccccccccH---HHHHHHHHHHHhc-CCccceeeccchhhh
Confidence 45566655522 33443 33333322 33333 3346666654322 2455677776665 45666655 455888
Q ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHH
Q 040733 516 MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595 (643)
Q Consensus 516 m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~ 595 (643)
..+..|.+|...+.|+++|.-+......-+ . .....|..++.+.+.....++++++++.
T Consensus 81 n~~~gi~~A~~~~~Pvl~isg~~~~~~~~~-------------~--------~~q~~d~~~~~~~~tk~~~~v~~~~~~~ 139 (181)
T d1ozha2 81 NLITGMATANSEGDPVVALGGAVKRADKAK-------------Q--------VHQSMDTVAMFSPVTKYAIEVTAPDALA 139 (181)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCTTTC---------------------------CCCHHHHHGGGCSEEEECCSGGGHH
T ss_pred hhhhhHHHHhhcCCceeeeecccchhhccc-------------c--------ccccccccccccccchheeccCchhHHH
Confidence 889999999999999999998765432110 0 1245799999999999999999999988
Q ss_pred HHHHHHHh-----CCCcEEEEEEeCC
Q 040733 596 AAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 596 ~al~~al~-----~~gp~lIeV~v~~ 616 (643)
+.+++|+. ..||+.||+..|-
T Consensus 140 ~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (181)
T d1ozha2 140 EVVSNAFRAAEQGRPGSAFVSLPQDV 165 (181)
T ss_dssp HHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred HHHHHHHHHHhhCCCccEEEEcChHH
Confidence 88887764 4689999998764
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.83 E-value=0.0014 Score=59.67 Aligned_cols=120 Identities=11% Similarity=0.020 Sum_probs=85.0
Q ss_pred CCCeEEecCCCcccccchHHHHHHHHhCCCCeEEE-EecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHh
Q 040733 473 RARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVD-IDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRY 551 (643)
Q Consensus 473 ~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~-i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~ 551 (643)
+.-+++....- ..+.-+|-|.+... +++.++ .+.--|+...+..|.+|...+.|+++|.-+.......
T Consensus 36 ~~i~~i~~~hE---~~A~~~A~gyar~t-g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~------- 104 (186)
T d2ihta2 36 EGIDFVLTRHE---FTAGVAADVLARIT-GRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIF------- 104 (186)
T ss_dssp TTCEEEECSSH---HHHHHHHHHHHHHH-CSCEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEESCGGGCC-------
T ss_pred cCCEEEEEccc---hhhHHHHHHHhhcc-CCcceeeccccccccchhhhhhHHHHhhccceeeeccCcchhcc-------
Confidence 34555554332 12455677777665 345444 4566677778999999999999999998765432210
Q ss_pred hcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 552 FEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 552 ~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
... .....|..++.+.+-....+|++++++.+.+++|+. ..||+.||++.|-
T Consensus 105 ------~~~-------~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~Di 161 (186)
T d2ihta2 105 ------PND-------THQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL 161 (186)
T ss_dssp ------TTT-------STTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred ------ccc-------cccccccccccCCceeeccccCCchhhhhHHHHHHHHHhcCCCeeEEEEeCHhH
Confidence 000 134579999999999999999999999888888764 4589999999763
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.015 Score=52.04 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe-cCccccC
Q 040733 438 YAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID-GDGSFIM 516 (643)
Q Consensus 438 ~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~-GDGsf~m 516 (643)
.+++.|.+.== +.++. =.|.+..+....+.....-+++....-.+ +.-+|-|.+... +++.++++ .-.|+..
T Consensus 9 ~l~~~L~~~Gi--~~vFg-ipG~~~~~l~~al~~~~~~~~i~~~~E~~---A~~~A~gyar~t-g~~~v~~~t~GpG~~n 81 (175)
T d1t9ba2 9 IFNEMMSRQNV--DTVFG-YPGGAILPVYDAIHNSDKFNFVLPKHEQG---AGHMAEGYARAS-GKPGVVLVTSGPGATN 81 (175)
T ss_dssp HHHHHHHHTTC--CEEEE-CCCGGGHHHHHHTTTCSSSEEECCSSHHH---HHHHHHHHHHHH-SSCEEEEECSTHHHHT
T ss_pred HHHHHHHHCCC--CEEEE-cCChhHHHHHHHHhhcccceEEEecCchh---HHHHHHHHHHHh-CCceEEEEecCcHHHH
Confidence 45555655411 33433 23333333333443333445665544322 445777777666 55666655 4447888
Q ss_pred CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHH
Q 040733 517 NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRA 596 (643)
Q Consensus 517 ~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~ 596 (643)
.++.|.+|...++|+++|.-+...... +.. .....|..++++.+-....++++++++.+
T Consensus 82 ~~~gl~~A~~~~~Pvl~i~g~~~~~~~--------------~~~-------~~q~~d~~~l~~~~tk~~~~v~~~~~~~~ 140 (175)
T d1t9ba2 82 VVTPMADAFADGIPMVVFTGQVPTSAI--------------GTD-------AFQEADVVGISRSCTKWNVMVKSVEELPL 140 (175)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTT--------------TSC-------CTTCCCHHHHTGGGSSEEEECCSGGGHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCCChhhc--------------CCC-------ccccccHhHhcccceeeeEecCCHHHHHH
Confidence 899999999999999999976543210 000 13457999999999888999999988777
Q ss_pred HHHHHHh-----CCCcEEEEEEeCC
Q 040733 597 AIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 597 al~~al~-----~~gp~lIeV~v~~ 616 (643)
.+++|+. ..||+.|+++.|-
T Consensus 141 ~l~~A~~~a~~~~~GPv~l~iP~Dv 165 (175)
T d1t9ba2 141 RINEAFEIATSGRPGPVLVDLPKDV 165 (175)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred HHHHHHHHHhcCCCccEEEEcChhh
Confidence 7776653 4679999999863
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.0054 Score=56.10 Aligned_cols=118 Identities=14% Similarity=0.027 Sum_probs=81.5
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-cCCCCCCccCHHHH
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-LGTDAFQEIPVVEV 186 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-~g~~~~Q~~d~~~~ 186 (643)
|+| ...-|++++.+|.|.|...+.+-.+..|..+=.......+..+...+.|++++.....-.. ..-..+|.+++..+
T Consensus 73 R~i~~GIaEq~m~~iaaGlA~~G~~~~p~~~t~~~f~~~~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDia~ 152 (197)
T d1gpua2 73 RYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAH 152 (197)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHCTTCEEEEEEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHH
T ss_pred ceeecccchhhHHHHHHHHHHcCCceeEEEEeehhhhhhhHHHHHHhhhcCCceEEEEecccccccccccchhhHHHHHH
Confidence 344 6688999999999999776555566666666555566666666677788887754433322 12235899999999
Q ss_pred hhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 187 TRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 187 ~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
+|.+- +.+|-.|.|..+ +..|++.|.....||+||.+++.
T Consensus 153 ~r~iP--n~~v~~PaD~~e-~~~a~~~a~~~~~gP~yiRl~R~ 192 (197)
T d1gpua2 153 FRSLP--NIQVWRPADGNE-VSAAYKNSLESKHTPSIIALSRQ 192 (197)
T ss_dssp HHTSS--SCEEECCCSHHH-HHHHHHHHHHCSSCCEEEECCSS
T ss_pred HhcCC--CcEEEecCCHHH-HHHHHHHHHHcCCCCEEEEecCC
Confidence 99997 455556666443 34567766655679999999764
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=96.69 E-value=0.026 Score=50.88 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=85.9
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
.-+++....- +.+.-+|-|.+.+. +++-|+++ .--|+...+..|..|...+.|+++|.-+-.....
T Consensus 43 ~i~~i~~r~E---~~A~~~A~gyar~t-g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~--------- 109 (184)
T d2djia2 43 NVKFLQVKHE---EVGAMAAVMQSKFG-GNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQREL--------- 109 (184)
T ss_dssp CCEEEECSSH---HHHHHHHHHHHHTT-CCCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEESCGGGT---------
T ss_pred CcEEEEecCC---cchHHHHHhhhhcc-cCcceeeccccccccchhHhHHHHHHhCccceeecccchhhHh---------
Confidence 3566665432 23566777877776 45655555 5547888899999999999999999876543211
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCCC
Q 040733 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~~ 618 (643)
+ .. .....|...+.+.+.....+|++++++.+.+++|+ ..+||+.|||+.|-..
T Consensus 110 ~----~~--------~~Q~~d~~~~~~~itk~~~~v~~~~~~~~~~~~A~~~a~~~rGPv~i~iP~Dv~~ 167 (184)
T d2djia2 110 N----MD--------AFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLEVPGDFAK 167 (184)
T ss_dssp T----TT--------CTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEETTGGG
T ss_pred h----cC--------cccccccccchhhhcceeeccccchhhHHHHHHHHHHHhCCCCCEEEEeCchhhh
Confidence 0 00 12456889999999888999999999888777765 3569999999987543
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.61 E-value=0.015 Score=52.29 Aligned_cols=128 Identities=16% Similarity=0.068 Sum_probs=82.8
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
.-+++....-.+ +.-+|-|.+... ++.+++++.--|+.-.+..|.+|...++|+++|.-++.....-+. .
T Consensus 41 ~i~~i~~~~E~~---A~~~A~gyar~t-~~~~v~~t~GpG~~N~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~----~-- 110 (180)
T d1pvda2 41 GMRWAGNANELN---AAYAADGYARIK-GMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQ----L-- 110 (180)
T ss_dssp TCEECCCSCHHH---HHHHHHHHHHHH-SCEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEECCCC------------
T ss_pred ceEEeeecccch---hhHHHHHHhhcc-CCceeeeccccccchhhHHHHHHHhhcccEEEEeccCCccccccc----c--
Confidence 356665544332 455677777666 578877776667777789999999999999999876554321110 0
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCCC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~~ 618 (643)
..+..++. ....++.++.+.+--...++++++++.+.+++|+ ..+||+.||++.|-.+
T Consensus 111 --~~~~~~~~-----~~~~~~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~gPv~i~iP~dv~~ 172 (180)
T d1pvda2 111 --LLHHTLGN-----GDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVD 172 (180)
T ss_dssp ----CCSCSS-----SCSSHHHHHHGGGCSEEEECCCTTTHHHHHHHHHHHHHHHTSCEEEEEETTTTT
T ss_pred --eeeecccc-----cchhHHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhCCCCCEEEECCccccc
Confidence 00111111 1234567788888777889998877766665554 4689999999987654
|
| >d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron transfer flavoprotein alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: C-terminal domain of the electron transfer flavoprotein alpha subunit domain: C-terminal domain of the electron transfer flavoprotein alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.0044 Score=51.44 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=75.9
Q ss_pred cEEEEcCCch--hhHHHHHHHHHHhCCceeecCC--CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCcc
Q 040733 274 PVLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM--GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNER 349 (643)
Q Consensus 274 PvIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~--gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~ 349 (643)
-++-+|+|.. +..+.+.+||+++|.-|-.|-. -.|.+|. ...+|..|. .-.+++.|++|.+=...
T Consensus 10 ivV~~GrG~~~~e~~~~~~~lA~~lga~vg~SR~~vd~gw~~~--~~qIG~SG~---------~V~P~lyia~GISGa~Q 78 (124)
T d1efva2 10 VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPN--DMQVGQTGK---------IVAPELYIAVGISGAIQ 78 (124)
T ss_dssp EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTSB---------CCCCSEEEEESCCCCHH
T ss_pred EEEECCCCcCCHHHHHHHHHHHHHhCCeeeEeehhhhCCCccc--ceeecccce---------EeCCcEEEEecchhHHH
Confidence 3444566664 4568899999999999988732 2466765 345555442 23789999999774322
Q ss_pred ccCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 350 MTSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 350 ~t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
.... ......+|-|+.|+...= ...+|+.+++|..++|.+|.+.+
T Consensus 79 H~~G---i~~s~~IvAIN~D~~ApI-f~~aD~giVgD~~evlp~L~e~l 123 (124)
T d1efva2 79 HLAG---MKDSKTIVAINKDPEAPI-FQVADYGIVADLFKVVPEMTEIL 123 (124)
T ss_dssp HHTT---TTTCSEEEEEESCTTCGG-GGTCSEEEESCHHHHHHHHHHHT
T ss_pred HHhh---ccCCCEEEEEeCCCCCCc-cccCCEEEeccHHHHHHHHHHHh
Confidence 2222 233457999999987421 24689999999999999998764
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=96.48 E-value=0.034 Score=50.50 Aligned_cols=152 Identities=16% Similarity=0.091 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe-cCcccc
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID-GDGSFI 515 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~-GDGsf~ 515 (643)
+.+++.|.+.== +.++.. .|...+.....+.-....+++....- ..+.-+|-|.+.+. +++.|+++ ..-|+.
T Consensus 16 d~i~~~L~~~Gv--~~vFgi-pG~~~~~l~~al~~~~~i~~i~~rhE---~~A~~mAdgyar~t-g~~gv~~~t~GpG~~ 88 (195)
T d1ybha2 16 DILVEALERQGV--ETVFAY-PGGASMEIHQALTRSSSIRNVLPRHE---QGGVFAAEGYARSS-GKPGICIATSGPGAT 88 (195)
T ss_dssp HHHHHHHHTTTC--CEEEEC-CCGGGHHHHHHHHHCSSCEECCCSSH---HHHHHHHHHHHHHH-SSCEEEEECTTHHHH
T ss_pred HHHHHHHHHCCC--CEEEEc-CCccHHHHHHHHhhhcceeecccccH---HHHHHHHHHHHHHH-CCCeEEEEecChHHH
Confidence 345555655411 334433 34333333333322233455543321 12456777877776 45555554 555888
Q ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHH
Q 040733 516 MNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVR 595 (643)
Q Consensus 516 m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~ 595 (643)
..+..|.+|...+.|+++|.-+...... + .. .....|...+.+.+-....++++++++.
T Consensus 89 N~~~gl~~A~~~~~Pvlvi~g~~~~~~~---------~----~~--------~~q~~d~~~~~~~~tk~~~~v~~~~~~~ 147 (195)
T d1ybha2 89 NLVSGLADALLDSVPLVAITGQVPRRMI---------G----TD--------AFQETPIVEVTRSITKHNYLVMDVEDIP 147 (195)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCGGGT---------T----TT--------CTTCCCHHHHHGGGSSEEEECCCGGGHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCcHHHh---------c----cC--------cccccchhhhhcccccchhhcchHhhcc
Confidence 8899999999999999999876543210 0 00 1356789999999988899999999998
Q ss_pred HHHHHHHh-----CCCcEEEEEEeCC
Q 040733 596 AAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 596 ~al~~al~-----~~gp~lIeV~v~~ 616 (643)
+.+++|+. ..||+.||++.|-
T Consensus 148 ~~~~~A~~~a~~~r~GPV~l~iP~Dv 173 (195)
T d1ybha2 148 RIIEEAFFLATSGRPGPVLVDVPKDI 173 (195)
T ss_dssp HHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred hHHHHHHHHHhcCCCCcEEEECChHH
Confidence 88888764 4689999998764
|
| >d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Maize (Zea mays) [TaxId: 4577]
Probab=96.41 E-value=0.011 Score=53.57 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=77.0
Q ss_pred eEE-ecCChhHHHHHHHHHHHH-hCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-cCCCCCCccCHHH
Q 040733 109 RSI-LPRHEQGGIFAAEGYARS-SGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-LGTDAFQEIPVVE 185 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~-sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-~g~~~~Q~~d~~~ 185 (643)
|+| ...-|++++.+|.|.|.. +|. -.++.|..+=..-....+..+-..+.|++++........ ..-..+|.+.+..
T Consensus 68 r~i~~GIaEq~m~~iAaGlA~~~~G~-~p~~~tf~~F~~~~~~~~~~~~~~~~~v~~v~~~~g~~~g~dG~TH~~ieDia 146 (192)
T d1itza2 68 RNVRFGVREHGMGAICNGIALHSPGF-VPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLV 146 (192)
T ss_dssp CBCCCCSCHHHHHHHHHHHHTTCTTC-EEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred ccceeceecchHHHHHHHHHHhcCCC-EEEEEEEhhhhhhccchhhhhccccccceEEEecCCcccccCCcccHHHHHHH
Confidence 455 568899999999999986 454 444556666555566666666677888776654443322 1223589999999
Q ss_pred HhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 186 VTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 186 ~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
++|.+-.. .|-.|.+- ..+..+++.|.....||+||.++..
T Consensus 147 ~~r~iPn~--~v~~P~d~-~e~~~~~~~a~~~~~gP~yiRl~R~ 187 (192)
T d1itza2 147 SFRAMPNI--LMLRPADG-NETAGAYKVAVLNRKRPSILALSRQ 187 (192)
T ss_dssp HHHSSSSC--EEECCCSH-HHHHHHHHHHHHCTTSCEEEEECSS
T ss_pred HHhCcCCc--eEEecCCH-HHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99999843 34344442 2234455555545679999999863
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.38 E-value=0.043 Score=48.84 Aligned_cols=120 Identities=14% Similarity=0.036 Sum_probs=82.9
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
..+++....-.+ +.-+|-|.+... +++.||++ .--++...+..|.+|...+.|+++|.-+......
T Consensus 42 ~i~~i~~r~E~~---A~~~A~gyar~t-gk~gv~~~t~GpG~~N~~~gl~~A~~~~~P~l~i~g~~~~~~~--------- 108 (174)
T d2ez9a2 42 RIHYIQVRHEEV---GAMAAAADAKLT-GKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGM--------- 108 (174)
T ss_dssp TSEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTT---------
T ss_pred CcEEEEecccch---hHHHHHHHHhhc-CceeEEeecccccccchhhhHHHHHhcCccceeeecccccccc---------
Confidence 456665544222 445666766665 46666655 4457777799999999999999999876543211
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHH----hCCCcEEEEEEeCCCC
Q 040733 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLML----ETPGPYLLDVMVSYQE 618 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al----~~~gp~lIeV~v~~~~ 618 (643)
+.. ..+..|...+.+.+-....++++++++.+.+++|+ ..+||+.||++.|-..
T Consensus 109 -----~~~-------~~Q~~d~~~~~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~pGPv~l~iP~Dv~~ 166 (174)
T d2ez9a2 109 -----NMD-------TFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPW 166 (174)
T ss_dssp -----TSC-------CTTCCCCHHHHTTTCSEEEECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETTGGG
T ss_pred -----Ccc-------ccccchhhhhhccccccccccccHHHHHHHHHHHHHHHhCCCCCEEEEeCccccc
Confidence 000 12456888999988878899999987776666654 4679999999987543
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=96.34 E-value=0.0027 Score=57.50 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=89.3
Q ss_pred ChhHHHHHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCe-EEEEecCccccCCHHHHHHHHHhCCCeEEEEEe
Q 040733 459 GQHQMWAIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAI-VVDIDGDGSFIMNLQELAAIKAENIPVKILLIN 537 (643)
Q Consensus 459 G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~-Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~N 537 (643)
|...+.....+ .+..+++....-. .+.-+|-|.+... +++ ++.++.-.|+...+..|.+|...+.|+++|.-+
T Consensus 24 G~~~~~~~~al--~~~i~~i~~rhE~---~A~~mA~gyar~t-gk~~v~~~~~GpG~~n~~~gl~~A~~~~~Pvlvi~g~ 97 (180)
T d1q6za2 24 GSNALPFLKDF--PEDFRYILALQEA---CVVGIADGYAQAS-RKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQ 97 (180)
T ss_dssp CGGGHHHHTTC--CTTCEEEECSSHH---HHHHHHHHHHHHH-TSCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEE
T ss_pred cHhHHHHHHHH--HhCCeEEEEccch---hHHHHHHHHhhhc-cCcceEEeccccccccccceeHhhhhcccceeeeccc
Confidence 44434333333 3455666554322 2455778887776 445 444555668888899999999999999999875
Q ss_pred CCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEE
Q 040733 538 NQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDV 612 (643)
Q Consensus 538 N~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV 612 (643)
-.... .+.+ . .....|..++.+.+-....++++++++.+.|++|++ ..||+.||+
T Consensus 98 ~~~~~---------~g~~---~--------~~q~~D~~~~~~~~tK~~~~v~~~~~i~~~l~~A~~~a~~~~~GPv~l~i 157 (180)
T d1q6za2 98 QTRAM---------IGVE---A--------LLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSV 157 (180)
T ss_dssp CCHHH---------HTTT---C--------TTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred ccccc---------cccc---c--------cchhhheeecccccccccccCCCHHHHHHHHHHHHHHHhcCCCccEEEEc
Confidence 43210 0100 0 023467888888887778899999999888888764 468999999
Q ss_pred EeCCCC
Q 040733 613 MVSYQE 618 (643)
Q Consensus 613 ~v~~~~ 618 (643)
+.|-.+
T Consensus 158 P~D~~~ 163 (180)
T d1q6za2 158 PYDDWD 163 (180)
T ss_dssp EGGGTT
T ss_pred ChhHhc
Confidence 987654
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=96.30 E-value=0.031 Score=50.26 Aligned_cols=149 Identities=11% Similarity=0.098 Sum_probs=95.8
Q ss_pred HHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhC-C-CeEEecCChh---HHHHHHHHHHHHhCCcEEEEEccchhhHHHH
Q 040733 74 DIIVEALERQGVTTVFAYPGGASIEIHQSLTRS-N-IRSILPRHEQ---GGIFAAEGYARSSGTPGVCLVSSGPGVTNIM 148 (643)
Q Consensus 74 ~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~-i~~i~~~hE~---~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~ 148 (643)
++|-+.+.+. =+.++..-|+....+...+... + -+++..-.-. .+.-+|.|.+-..+|+.+|++-=| ++.-.+
T Consensus 13 ~~l~~~~~~~-~D~iiv~dgg~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~~aig~~a~~~~~vv~i~GDG-sf~~~~ 90 (183)
T d2ji7a3 13 GVVRDFMLAN-PDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIAVEGDS-AFGFSG 90 (183)
T ss_dssp HHHHHHHHHC-CSSEEEEESSHHHHHHHHHSCCCSTTCEEECTTTTCTTCHHHHHHHHHHHHCSCEEEEEEHH-HHHTTG
T ss_pred HHHHHHHhcC-CCEEEEECchhHHHHHHHHhccCCCCcEEecCCccccccccchhhhhhcCCcceEEEEEcCc-chhhch
Confidence 3444444443 2567777777666665554332 2 4566543311 123455666556789877765433 344445
Q ss_pred HHHHHhhhCCCCEEEEeCCCccccc--------C---CCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcC
Q 040733 149 TGLMDAYSDSIPILAITGQVSQKLL--------G---TDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSG 217 (643)
Q Consensus 149 ~gl~~A~~~~vPvlvItg~~~~~~~--------g---~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~ 217 (643)
..+..|...++|+++|.-+...... + ...++..|...+.+.+--..+++.+++++.+.|++|++.
T Consensus 91 ~el~ta~~~~l~i~iiV~NN~g~~~~~q~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~---- 166 (183)
T d2ji7a3 91 MELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMMEAFGGKGYVANTPAELKAALEEAVAS---- 166 (183)
T ss_dssp GGHHHHHHTTCCEEEEEEECSBSSCSCCCCSBTTBCCTTBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHHHH----
T ss_pred hhhhhhhhccccchhhhhhhhhhhhhhhccccccccccccccccchhhhhhhcCCcEEEeCCHHHHHHHHHHHHhC----
Confidence 7899999999999999865431111 1 012345678888888877788999999998888888753
Q ss_pred CCCeEEEEcccc
Q 040733 218 RPGPVLIDIPVD 229 (643)
Q Consensus 218 ~~GPV~i~iP~D 229 (643)
.||+.|++..|
T Consensus 167 -~~p~lIev~id 177 (183)
T d2ji7a3 167 -GKPCLINAMID 177 (183)
T ss_dssp -TSCEEEEEEBC
T ss_pred -CCcEEEEEEEC
Confidence 48999999876
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.26 E-value=0.019 Score=53.57 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=104.0
Q ss_pred cHHHHHHHHHHHCCCCEEEEcc-CCCcHHHHHHHhhCC-CeEEecCCh---hHHHHHHHHHHHHhC-CcEEEEEccchhh
Q 040733 71 KGADIIVEALERQGVTTVFAYP-GGASIEIHQSLTRSN-IRSILPRHE---QGGIFAAEGYARSSG-TPGVCLVSSGPGV 144 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~P-G~~~~~l~~al~~~~-i~~i~~~hE---~~A~~~A~Gyar~sg-~~gv~~~t~GpG~ 144 (643)
...+.|-+.+.+.+-+.++..- |.+.+...+.+.-.. -+++....= ..+.-+|.|.+.+.. |+.+|+ +..-++
T Consensus 15 ~~~~~L~~~~~~~~~d~ivv~D~G~~~~~~~~~~~~~~p~~~i~~~~~g~mG~~~~aaiGa~lA~p~r~Vv~i-~GDGsf 93 (227)
T d1t9ba3 15 TVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDI-DGDASF 93 (227)
T ss_dssp HHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEE-EEHHHH
T ss_pred HHHHHHHHhcccCCCCEEEEECCcHHHHHHHHHcCCCCCceEeeecccccchhhHHHHHHHHhcCCCCeEEEe-CCCccc
Confidence 4566777777777766665443 443444444444333 556654443 445667888888775 555544 445566
Q ss_pred HHHHHHHHHhhhCCCCEEEEeCCCccc---------ccCC----CCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHH
Q 040733 145 TNIMTGLMDAYSDSIPILAITGQVSQK---------LLGT----DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAF 211 (643)
Q Consensus 145 ~N~~~gl~~A~~~~vPvlvItg~~~~~---------~~g~----~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~ 211 (643)
.-.+.-|..|...++|+++|.-+.... ..+. -.+...|...+.+.+--+.++|.+++++...|++|+
T Consensus 94 ~m~~~EL~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~ 173 (227)
T d1t9ba3 94 NMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFV 173 (227)
T ss_dssp HHHGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHH
T ss_pred ccchHHHHHHhhcCCceEEEEEecccccchhHHHhhhhccccccccCCCCCHHHHHhhcccceEeeCCHHHHHHHHHHHH
Confidence 666788999999999999998654321 0111 123446888899999888999999999999888886
Q ss_pred HHhhcCCCCeEEEEcccch
Q 040733 212 FIATSGRPGPVLIDIPVDV 230 (643)
Q Consensus 212 ~~A~s~~~GPV~i~iP~Dv 230 (643)
. ..||+.|++..|-
T Consensus 174 ~-----~~~p~lieV~vd~ 187 (227)
T d1t9ba3 174 S-----TKGPVLLEVEVDK 187 (227)
T ss_dssp H-----CSSCEEEEEEBCS
T ss_pred H-----CCCCEEEEEEECC
Confidence 5 2489999999873
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.021 Score=51.79 Aligned_cols=115 Identities=17% Similarity=0.007 Sum_probs=78.2
Q ss_pred EEecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCCC--CCCccCHHHHh
Q 040733 110 SILPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGTD--AFQEIPVVEVT 187 (643)
Q Consensus 110 ~i~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~~--~~Q~~d~~~~~ 187 (643)
+-...-|++.+.+|.|.|...|. -.++.|..+=..-....+..+-..+.++++|....... .|.+ .+|.+++..++
T Consensus 73 i~~GIaEq~M~~iAaGlA~~g~~-~p~~stf~~f~~~~~~~ir~~~~~~~~~v~v~~h~g~~-~g~dG~THq~iEDia~l 150 (195)
T d2r8oa1 73 IHYGVREFGMTAIANGISLHGGF-LPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTHQPVEQVASL 150 (195)
T ss_dssp EECCSCHHHHHHHHHHHHHHSSC-EEEEEEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCCSSHHHHH
T ss_pred eeeeeehhhHHHHHHHHHhhCCc-eEEeecceeeeccccchhhccccccccceeeecccccc-ccccchhhHHHHHHHHH
Confidence 33578899999999999876654 44445666665666777766666666665554333322 2332 58999999999
Q ss_pred hccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 188 RYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 188 ~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
|.+. +..|-.|.| ...+..|++.|.....||+||.+++.
T Consensus 151 R~iP--n~~v~~P~D-~~E~~~a~~~a~~~~~gP~ylRl~R~ 189 (195)
T d2r8oa1 151 RVTP--NMSTWRPCD-QVESAVAWKYGVERQDGPTALILSRQ 189 (195)
T ss_dssp HTST--TCEEECCSS-HHHHHHHHHHHHHCSSSCEEEECCSS
T ss_pred HhhC--CcEEEecCC-HHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 9997 444445665 33455677777666679999999863
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.14 E-value=0.055 Score=50.33 Aligned_cols=141 Identities=19% Similarity=0.269 Sum_probs=94.7
Q ss_pred CCCEEEEccCCCcH-HHHHHHhhCC-CeEEecCCh---hHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhC
Q 040733 84 GVTTVFAYPGGASI-EIHQSLTRSN-IRSILPRHE---QGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSD 157 (643)
Q Consensus 84 GV~~vFg~PG~~~~-~l~~al~~~~-i~~i~~~hE---~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~ 157 (643)
.=+.++..-++.+. .....+.-.+ -+++....= ..+.-+|.|.+.+. +++.||++-=| |+.-.+.-|..|...
T Consensus 20 ~~d~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~Vv~i~GDG-~f~m~~~EL~Ta~~~ 98 (228)
T d2ez9a3 20 EPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDG-GASMTMQDLATQVQY 98 (228)
T ss_dssp CTTCEEEECSSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHH-HHHHHGGGHHHHHHT
T ss_pred CCCeEEEEcCcHHHHHHHHHccCCCCceeeeecccccccccchhhhhhhhhhccceeEeecCCc-cccccchhhhhhccc
Confidence 43456655444333 3333443333 566654432 34566899999887 57777765544 555556789999999
Q ss_pred CCCEEEEeCCCccc--------------ccCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEE
Q 040733 158 SIPILAITGQVSQK--------------LLGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVL 223 (643)
Q Consensus 158 ~vPvlvItg~~~~~--------------~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~ 223 (643)
++|+++|.-+.... ..++ .+...|...+.+.+--..++|.+++++..+|++|...+ ..||+.
T Consensus 99 ~lpi~~vV~NN~~yg~i~~~q~~~~~~~~~~~-~l~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~al~---~~~p~l 174 (228)
T d2ez9a3 99 HLPVINVVFTNCQYGWIKDEQEDTNQNDFIGV-EFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIA---QHEPVL 174 (228)
T ss_dssp TCCCEEEEEECSBCHHHHHHHHHHCSSCCCSS-BCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHHHHHHT---TTSCEE
T ss_pred cCceEEEEeccccchhhhhhhhhcccCCcccc-cccCccHHhhccccccceEEeCCHHHHHHHHHHHHHHc---CCCeEE
Confidence 99999988644321 1111 24567888899988888899999999999999875433 248999
Q ss_pred EEcccc
Q 040733 224 IDIPVD 229 (643)
Q Consensus 224 i~iP~D 229 (643)
|++..|
T Consensus 175 Iev~vd 180 (228)
T d2ez9a3 175 IDAVIT 180 (228)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 998876
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=96.12 E-value=0.022 Score=51.46 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=78.8
Q ss_pred eEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccccCC--CCCCccCHHH
Q 040733 109 RSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKLLGT--DAFQEIPVVE 185 (643)
Q Consensus 109 ~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~~g~--~~~Q~~d~~~ 185 (643)
|+| ...-|++.+.+|.|.+...|. -.++.|..+=..-....+..+-..+.|+++|....... .|. ..+|.+++..
T Consensus 65 r~i~~GIaEqnm~~iAaGla~~~g~-~p~~~t~~~F~~r~~~~ir~~~~~~~~v~~v~~~~g~~-~g~dG~THq~ieDla 142 (190)
T d1r9ja1 65 RYIRFGVREHAMCAILNGLDAHDGI-IPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIG-VGEDGPTHQPVELVA 142 (190)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSC-EEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSSHHH
T ss_pred CeeeeccchhhHHHHHHHHHHcCCc-ceEEecchhhhccchHHHHHhcccCCceEEEEecCccc-cCCCCcchhHHHHHH
Confidence 565 568899999999999977665 44445777777777777777666777877765444332 232 3589999999
Q ss_pred HhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 186 VTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 186 ~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
++|.+-. ..|-.|.+- ..+..|++.|.....||+||.+++
T Consensus 143 ~~R~iPn--~~V~~PaD~-~E~~~al~~a~~~~~gP~yiRl~R 182 (190)
T d1r9ja1 143 ALRAMPN--LQVIRPSDQ-TETSGAWAVALSSIHTPTVLCLSR 182 (190)
T ss_dssp HHHHSTT--CEEECCSSH-HHHHHHHHHHHHCTTCCEEEECCS
T ss_pred HHHhcCC--EEEEecCCH-HHHHHHHHHHHHcCCCCEEEEecC
Confidence 9999874 333345442 234455566555567999999986
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=95.94 E-value=0.015 Score=52.74 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=83.1
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEe-cCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDID-GDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYF 552 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~-GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~ 552 (643)
+.+++....- ..+.-+|-|.+.+. +++.|+++ .--++...+..|.+|...+.|+++|.-+-... . .
T Consensus 41 ~i~~i~~~hE---~~A~~~A~gyar~t-g~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~-----~----~ 107 (188)
T d2ji7a2 41 GQRFYSFRHE---QHAGYAASIAGYIE-GKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSERE-----I----V 107 (188)
T ss_dssp TCEEEECSSH---HHHHHHHHHHHHHH-SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHH-----H----H
T ss_pred CCEEEEeccc---chhhhHHHHHHhhh-cccceeeccccccccccchhHHHHHHhcccceEEeccCchh-----h----h
Confidence 4556554432 22566777877776 45656655 44566667899999999999999998654310 0 0
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHHHHh-----CCCcEEEEEEeCC
Q 040733 553 EANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQLMLE-----TPGPYLLDVMVSY 616 (643)
Q Consensus 553 ~~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~al~-----~~gp~lIeV~v~~ 616 (643)
+.+. . .....|...+.+.+-....+|++++++.+.+++|+. ..||+.||+..|-
T Consensus 108 ~~~~--~--------~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~~~~A~~~a~~~~~GPV~l~iP~dv 166 (188)
T d2ji7a2 108 DLQQ--G--------DYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKL 166 (188)
T ss_dssp HTTC--C--------CTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred cccc--c--------ccceeeeecccCCcchhhhccccccccHHHHHHHHHHHhCCCCceEEEEcChhH
Confidence 0000 0 124579999999999999999999998887777664 5689999998764
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=95.87 E-value=0.016 Score=54.32 Aligned_cols=107 Identities=13% Similarity=0.261 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc-------------cCCCCCCccCHH
Q 040733 119 GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL-------------LGTDAFQEIPVV 184 (643)
Q Consensus 119 A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~-------------~g~~~~Q~~d~~ 184 (643)
+.-+|.|.+.+. +|+.+|++-=| ++.-.++.|..|...++|+++|.-+..... .++ .+...|..
T Consensus 57 ~lp~aiGa~~a~p~~~vv~i~GDG-sf~m~~~eL~ta~~~~lpi~iiV~nN~~~~~i~~~~~~~~~~~~~~-~~~~~d~~ 134 (229)
T d2djia3 57 AIPGGLGAKNTYPDRQVWNIIGDG-AFSMTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGV-DFTDVDYA 134 (229)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEEHH-HHHHHGGGHHHHHHTTCCCEEEEEECSBCTHHHHHHHHHCSCCCSC-BCCCCCHH
T ss_pred cchhhhhhhhhccccccccccccc-ccccccchhhhhhcccCCceEEEeCCchhhhhhHHHHhhcCCCCcC-cCCCCChh
Confidence 456778888776 67777765544 455556789999999999988886543210 111 24567888
Q ss_pred HHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 185 EVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 185 ~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.+.+.+-...+++.+++++..++++|+..... .||+.|++..|
T Consensus 135 ~lA~a~G~~~~~v~~~~el~~al~~A~~~~~~--~~p~lIev~v~ 177 (229)
T d2djia3 135 KIAEAQGAKGFTVSRIEDMDRVMAEAVAANKA--GHTVVIDCKIT 177 (229)
T ss_dssp HHHHHTTSEEEEECBHHHHHHHHHHHHHHHHT--TCCEEEEEECC
T ss_pred hhhhccCccEEEEecHHHhHHHHHHHHHhcCC--CCeEEEEEEeC
Confidence 88888866788999999999999999875443 38999999866
|
| >d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron transfer flavoprotein alpha subunit {Methylophilus methylotrophus [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: C-terminal domain of the electron transfer flavoprotein alpha subunit domain: C-terminal domain of the electron transfer flavoprotein alpha subunit species: Methylophilus methylotrophus [TaxId: 17]
Probab=95.77 E-value=0.014 Score=48.23 Aligned_cols=109 Identities=17% Similarity=0.318 Sum_probs=73.6
Q ss_pred EEEEcCCch--hhHHHHHHHHHHhCCceeecCC--CCCCCCCCCCCcccccCCCCcHHHHHhhhcCCEEEEecCccCccc
Q 040733 275 VLCVGGGCL--NSSEELRKFVGLTGIPVTCTTM--GLGLFPCTDELCLRMVGMFGTVYANYAVNECDLLLAAGVRFNERM 350 (643)
Q Consensus 275 vIl~G~g~~--~~~~~l~~lae~lg~PV~tt~~--gkg~~~~~hpl~lG~~g~~~~~~~~~~l~~aDlvL~vG~~~~~~~ 350 (643)
++-+|+|.. ...+.+++||+.+|.-|-.|-. -.|.+|. ...+|..| . .+..+++.|.+|.+=....
T Consensus 10 VV~~GrG~~~~e~~~~~~eLA~~lga~vg~SRp~vd~gw~~~--~~qIG~sG---~-----~v~~P~lYia~GISGa~QH 79 (123)
T d3clsd2 10 IMSIGRGIGEETNVEQFRELADEAGATLCCSCPIADAGWLPK--SRQVGQSG---K-----VVGSCKLYVAMGISGSIQH 79 (123)
T ss_dssp EEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSSSS---B-----CCTTCSEEEEESCCCCHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhhcceeeccHHHHcCCCCh--hheEecCC---c-----cccCCcEEEEEcccchHHH
Confidence 344455664 4577899999999999987732 2467765 34455444 2 1346799999997732221
Q ss_pred cCccccccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHH
Q 040733 351 TSKLEDFATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMI 397 (643)
Q Consensus 351 t~~~~~~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~ 397 (643)
.. -......+|-|+.|+..-= ....|+.|++|+.++|.+|.+.
T Consensus 80 ~~---Gm~~s~~IVAIN~D~~ApI-f~~adygiVgD~~evlp~L~~~ 122 (123)
T d3clsd2 80 MA---GMKHVPTIIAVNTDPGASI-FTIAKYGIVADIFDIEEELKAQ 122 (123)
T ss_dssp HH---HHTTCSEEEEECSCTTCGG-GGTCSEEECSCHHHHHHHHHHH
T ss_pred HH---hccCCCEEEEEcCCCCCCc-hhhCCEEEEeeHHHHHHHHHhh
Confidence 11 1233457999999987421 2358999999999999999865
|
| >d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase CobB species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.016 Score=54.39 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=51.2
Q ss_pred HHHHHhhhcCCEEEEecCccCccccCccccc--cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHh
Q 040733 327 VYANYAVNECDLLLAAGVRFNERMTSKLEDF--ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILE 399 (643)
Q Consensus 327 ~~~~~~l~~aDlvL~vG~~~~~~~t~~~~~~--~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 399 (643)
..+...++++|++|++|+++.-.....+-.. ..++++|.|+.++...+. ..++.|.+++.++|.+|.+.|-
T Consensus 159 ~~~~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~iiiIN~~~t~~~~--~~~~~i~g~a~e~l~~l~~~l~ 231 (235)
T d1s5pa_ 159 DEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN--EFAEKYYGPASQVVPEFVEKLL 231 (235)
T ss_dssp HHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC-----CCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEccCCcccCHHHHHHHHHHcCCeEEEECCCCCCCCC--cccEEEeCCHHHHHHHHHHHHH
Confidence 3456678999999999999864443333221 245789999998876554 5688999999999999887653
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.77 E-value=0.032 Score=50.86 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHCCC--CEEEEccCCCcHHHHHHHhh-CC-CeEEecCCh---hHHHHHHHHHHHHh-CCcEEEEEccchh
Q 040733 72 GADIIVEALERQGV--TTVFAYPGGASIEIHQSLTR-SN-IRSILPRHE---QGGIFAAEGYARSS-GTPGVCLVSSGPG 143 (643)
Q Consensus 72 ~a~~lv~~L~~~GV--~~vFg~PG~~~~~l~~al~~-~~-i~~i~~~hE---~~A~~~A~Gyar~s-g~~gv~~~t~GpG 143 (643)
.-+.|-+.|++... +.++..-++....+...+.+ .+ -+++....= ..+.-+|.|.+.+. +++.+|++-=| +
T Consensus 13 v~~~l~~~~~~~~~p~d~iiv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~~a~p~~~Vv~i~GDG-s 91 (198)
T d2ihta3 13 VIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDG-G 91 (198)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHH-H
T ss_pred HHHHHHHHHHhccCCCCEEEEEcCcHHHHHHHHHcCcCCCCeEEecCCcccchhHHHHHHHHhhhhcccceEeecccc-c
Confidence 44555556655443 44555544432222222222 22 456554431 22457888988887 56777776544 5
Q ss_pred hHHHHHHHHHhhhCCCCEEEEeCCCcccc----------cCC----CCCCccCHHHHhhccceeeeEeCCcCcHHHHHHH
Q 040733 144 VTNIMTGLMDAYSDSIPILAITGQVSQKL----------LGT----DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKE 209 (643)
Q Consensus 144 ~~N~~~gl~~A~~~~vPvlvItg~~~~~~----------~g~----~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~ 209 (643)
+.-.+..+..+...++|+++|.-+..... .+. ..+..+|...+.+.+--..+++.+++++...+++
T Consensus 92 f~~~~~el~t~~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~ 171 (198)
T d2ihta3 92 FHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRK 171 (198)
T ss_dssp HHHTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECCSHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhhhHHHhhccccceEeeeeccccccccccccccCCcchhhhccccCceEEEeCCHHHHHHHHHH
Confidence 55566788999999999998886553210 011 1234568888888887778889998888777777
Q ss_pred HHHHhhcCCCCeEEEEcccc
Q 040733 210 AFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 210 A~~~A~s~~~GPV~i~iP~D 229 (643)
|++ ..||+.|+|..|
T Consensus 172 a~~-----~~~p~lIeV~vd 186 (198)
T d2ihta3 172 GAE-----LGRPFLIEVPVN 186 (198)
T ss_dssp HHT-----SSSCEEEEEEBC
T ss_pred HHh-----CCCCEEEEEEcC
Confidence 753 359999999876
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.75 E-value=0.24 Score=44.39 Aligned_cols=140 Identities=15% Similarity=0.122 Sum_probs=91.5
Q ss_pred CCCEEEEccCCC-cHHHHHHHhhCC-CeEEecCCh---hHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhC
Q 040733 84 GVTTVFAYPGGA-SIEIHQSLTRSN-IRSILPRHE---QGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSD 157 (643)
Q Consensus 84 GV~~vFg~PG~~-~~~l~~al~~~~-i~~i~~~hE---~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~ 157 (643)
.=+.++..-++. .......+...+ -+++....= ..+.-+|.|.+.+. +|+.+|++.= -++.-.+..+..+...
T Consensus 19 ~~d~ii~~d~G~~~~~~~~~l~~~~p~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vi~i~GD-G~f~~~~~el~t~~~~ 97 (192)
T d1ozha3 19 NSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGD-GGFLQSSMELETAVRL 97 (192)
T ss_dssp CTTEEEEECSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEH-HHHHHHTTHHHHHHHH
T ss_pred CCCcEEEEcCcHHHHHHHHhcccCCCceeecccccccccccccchhHHHhhcccccceeeccc-ccccchhhhHHHHhhh
Confidence 335555554443 333334454444 455554321 24567788888887 6666666543 3455566788899999
Q ss_pred CCCEEEEeCCCcccc-------------cCCCCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 158 SIPILAITGQVSQKL-------------LGTDAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 158 ~vPvlvItg~~~~~~-------------~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
+.|+++|.-+..... .+. .+..+|...+.+.+=-..+++.+++++...+++|++ ..||+.|
T Consensus 98 ~l~~~iiv~nN~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-----~~gp~lI 171 (192)
T d1ozha3 98 KANVLHLIWVDNGYNMVAIQEEKKYQRLSGV-EFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMD-----VDGPAVV 171 (192)
T ss_dssp TCCEEEEEEECSBCHHHHHHHHHHHSSCCSC-BCCCCCHHHHHHTTTSEEEECCSGGGHHHHHHHHHH-----SSSCEEE
T ss_pred cCceeEEEEcCCCccccccccccccCccccC-cCCCCCHHHHHHHhccccEEeCCHHHHHHHHHHHHH-----cCCcEEE
Confidence 999998875332210 111 245678889999887677899999999888888765 3589999
Q ss_pred Ecccch
Q 040733 225 DIPVDV 230 (643)
Q Consensus 225 ~iP~Dv 230 (643)
+|..|-
T Consensus 172 eV~vd~ 177 (192)
T d1ozha3 172 AIPVDY 177 (192)
T ss_dssp EEEBCC
T ss_pred EEEeCC
Confidence 997763
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=94.42 E-value=0.14 Score=46.61 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=83.6
Q ss_pred CEEEEccCCCcHHHHHHHh-hCCCeEEecCChhH---HHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCC
Q 040733 86 TTVFAYPGGASIEIHQSLT-RSNIRSILPRHEQG---GIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIP 160 (643)
Q Consensus 86 ~~vFg~PG~~~~~l~~al~-~~~i~~i~~~hE~~---A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vP 160 (643)
+.++..-++...-....+. ..+-+++....=.+ +.-+|.|.+.+. +|+.+|++-=| ++.-.+..|..|...++|
T Consensus 19 ~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lp 97 (204)
T d1zpda3 19 NTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDG-SFQLTAQEVAQMVRLKLP 97 (204)
T ss_dssp TEEEEECSSHHHHHHHTCCCCTTCEEEECTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHH-HHHHHGGGHHHHHHTTCC
T ss_pred CCEEEECchHhHHHHHHhCCCCCCeEEcCCCCcccchhhHHHHHHHHhCCCCceecccccc-ceeeeecccchhhhcccc
Confidence 5566554443321111221 12366776655333 667889999887 57777765433 444456889999999999
Q ss_pred EEEEeCCCcccc----cCCC---CCCccCHHHHhhc---------cceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEE
Q 040733 161 ILAITGQVSQKL----LGTD---AFQEIPVVEVTRY---------MTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLI 224 (643)
Q Consensus 161 vlvItg~~~~~~----~g~~---~~Q~~d~~~~~~~---------~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i 224 (643)
+++|.-+..... .... .....|...+.+. +-.+.+++.+++++.+.|++|+. ...||+.|
T Consensus 98 i~iiV~NN~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~a~~~g~~~~~v~~~~el~~al~~al~----~~~gp~li 173 (204)
T d1zpda3 98 VIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALA----NTDGPTLI 173 (204)
T ss_dssp CEEEEEECSSCHHHHTTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHH----CCSSCEEE
T ss_pred cceEEEecccccccceeccccccccchhhhhhhhhhcCcchhhhccCccEEEecCHHHHHHHHHHHHH----cCCCcEEE
Confidence 999876554211 0011 1122344444332 23457788888888888877753 23589999
Q ss_pred Ecccc
Q 040733 225 DIPVD 229 (643)
Q Consensus 225 ~iP~D 229 (643)
+|..|
T Consensus 174 eV~vd 178 (204)
T d1zpda3 174 ECFIG 178 (204)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 99765
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=94.37 E-value=0.12 Score=45.84 Aligned_cols=125 Identities=18% Similarity=0.116 Sum_probs=78.1
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCCHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhc
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMNLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFE 553 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~ 553 (643)
.-+++....-. .+.-+|-|.+... ++++|+++---|+...+..|.+|...++|+++|.-...... ..+ +
T Consensus 41 ~i~~i~~rhE~---~A~~~A~gyar~t-~~~~v~~t~GpG~~n~~~gl~~A~~~~~Pvl~isg~~~~~~-----~~~--~ 109 (178)
T d1ovma2 41 DICWVGCANEL---NASYAADGYARCK-GFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAA-----QQR--G 109 (178)
T ss_dssp SCEEEECSSHH---HHHHHHHHHHHHH-SCEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHH-----HHH--T
T ss_pred CeEEEEeccch---hhHHHHHHHHhcC-CCceEEeeccccccccchhhhHHHhcCccEEEEecCCCchh-----hcc--c
Confidence 45666554322 2455667776665 56777665434677779999999999999999987644211 111 1
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHhHCCCCEEEeCChhHHHHHHHH---HHhCCCcEEEEEEeC
Q 040733 554 ANRANSFLGDPLRKSEIFPDMLKFAEACGIPAARVTKKKDVRAAIQL---MLETPGPYLLDVMVS 615 (643)
Q Consensus 554 ~~~~~~~~g~p~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~---al~~~gp~lIeV~v~ 615 (643)
....+. .++ ...-|+.++.+.+-....++++++++.+.++. +...+||..|+++.|
T Consensus 110 ~~~~~~-~~~-----~~~~~~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~a~~~~~Pv~i~iP~D 168 (178)
T d1ovma2 110 ELLHHT-LGD-----GEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPAD 168 (178)
T ss_dssp CCCTTS-CSS-----SCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred cccccc-ccc-----chhhhccccccccceeEEEeCcHHHHHHHHHHHHHHHhCCCCEEEEEChH
Confidence 111111 111 22346778888887777888888776665443 444678999999865
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=94.15 E-value=0.066 Score=49.03 Aligned_cols=117 Identities=14% Similarity=0.054 Sum_probs=79.8
Q ss_pred CeEEecCCh---hHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCcccc---------cC
Q 040733 108 IRSILPRHE---QGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQKL---------LG 174 (643)
Q Consensus 108 i~~i~~~hE---~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~~---------~g 174 (643)
-+++....- ..+.-+|.|.+.+. +|+.+|++-=| ++.=.+.-|..|...++|+++|.-+..... .+
T Consensus 43 ~~~~~~~~~g~mG~glpaaiGa~~A~p~~~Vi~i~GDG-sf~m~~~El~Ta~r~~lpi~iiV~NN~~~g~i~~~q~~~~~ 121 (208)
T d1ybha3 43 RQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDG-SFIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYK 121 (208)
T ss_dssp TSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHH-HHHHTTTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHST
T ss_pred ceeccccccccchhhhhhHHHHHhcCCCCcEEEEccCC-chhhhhhhHHHHHHhCCCEEEEEEeccccccceehhhhccc
Confidence 566655543 23455788887777 45666665433 333345689999999999999986543210 00
Q ss_pred -C-----------CCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccch
Q 040733 175 -T-----------DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVDV 230 (643)
Q Consensus 175 -~-----------~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~Dv 230 (643)
. ..+...|...+.+.+--+.+++.+++++...|++|+. ..||+.|++..|-
T Consensus 122 ~~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIeV~id~ 184 (208)
T d1ybha3 122 ANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLD-----TPGPYLLDVICPH 184 (208)
T ss_dssp TCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEECBHHHHHHHHHHHHH-----SSSCEEEEEECCT
T ss_pred ccccccccccccccCCCCCCHHHhhccCCceEEEcCCHHHHHHHHHHHHh-----CCCCEEEEEEECC
Confidence 0 0122347788888888889999999999998888875 2489999998773
|
| >d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase NpdA species: Thermotoga maritima [TaxId: 2336]
Probab=94.07 E-value=0.029 Score=52.97 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=50.3
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+.+.++++|++|++|+++.-....++.. ....+++|.|+.++...+. ..++.|.+|+.++|+.|.+.|
T Consensus 174 a~~~~~~~DlllviGTSl~V~p~~~l~~~a~~~g~~~i~IN~~~t~~d~--~~d~~i~g~~~e~l~~l~~~l 243 (245)
T d1yc5a1 174 AIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD--IATLKYNMDVVEFARRVMEEG 243 (245)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCEEEEECCCeEEechhhhhHHHHHcCCeEEEECCCCCCCCc--ceeEEEeCCHHHHHHHHHHHc
Confidence 3456789999999999986433322211 1235789999999876554 468999999999999998765
|
| >d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: AF1676, Sir2 homolog (Sir2-AF1?) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.04 E-value=0.041 Score=52.04 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=51.0
Q ss_pred HHHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
+...++++|++|++|+++.-.....+.. ...++++|.|+.++..+++ ..++.|.+|+.++|.+|.+.|.+
T Consensus 171 a~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~~i~IN~~~t~~d~--~~d~~i~g~a~e~L~~l~~~l~~ 242 (249)
T d1m2ka_ 171 AMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTP--IADYSLRGKAGEVMDELVRHVRK 242 (249)
T ss_dssp HHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG--GCSEEECSCHHHHHHHHHHHHHH
T ss_pred HHHhcccCCEEEEECCCCeeeehhhHHHHHHHcCCeEEEECCCCCCCCC--cccEEEECCHHHHHHHHHHHHHH
Confidence 3456789999999999985433322221 1246789999998876654 46899999999999998876653
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=94.03 E-value=0.047 Score=49.56 Aligned_cols=116 Identities=10% Similarity=0.121 Sum_probs=74.2
Q ss_pred CeEEecCC---hhHHHHHHHHHHHHh-CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccc-----ccCCC--
Q 040733 108 IRSILPRH---EQGGIFAAEGYARSS-GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQK-----LLGTD-- 176 (643)
Q Consensus 108 i~~i~~~h---E~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~-----~~g~~-- 176 (643)
-+++.... =..+.-+|.|.+.+. +|+.+|++-=| ++.-.+..|..|...++|+++|.-+.... .++.+
T Consensus 44 ~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG-~f~~~~~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~~~ 122 (196)
T d1ovma3 44 VNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDG-AAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQR 122 (196)
T ss_dssp CEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHH-HHHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCG
T ss_pred CeEEeCCCCccccccchhhHHHHHhhhccceecccccc-cceeecccccccccccccceEEEEecCccccchhhhccccc
Confidence 55665442 335678899999988 67777776555 55566789999999999998887544321 11111
Q ss_pred --CCCccCHHHHhhccc----eeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEcccc
Q 040733 177 --AFQEIPVVEVTRYMT----KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPVD 229 (643)
Q Consensus 177 --~~Q~~d~~~~~~~~t----k~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~D 229 (643)
.....|...+.+.+- ...+++.+++++...+++|+ . ..||+.|++..|
T Consensus 123 ~~~~~~~~~~~~a~~~g~~~~~~~~~v~~~~el~~al~~a~----~-~~gp~lIev~~~ 176 (196)
T d1ovma3 123 YNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVA----H-HERLSLIEVMLP 176 (196)
T ss_dssp GGCCCCCCGGGSTTTSCSSCCEEEEEECBHHHHHHHHHHHT----T-CSSEEEEEEECC
T ss_pred cccccccccchhHHhcCccccceeEEEecHHHHHHHHHHHH----H-CCCcEEEEEEeC
Confidence 112234344444433 24667888877776666654 3 349999999865
|
| >d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: AF0112, Sir2 homolog (Sir2-AF2) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.02 E-value=0.031 Score=52.89 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=51.2
Q ss_pred HHhhhcCCEEEEecCccCccccCcccc--ccCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHHHHHhh
Q 040733 330 NYAVNECDLLLAAGVRFNERMTSKLED--FATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMNMILES 400 (643)
Q Consensus 330 ~~~l~~aDlvL~vG~~~~~~~t~~~~~--~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 400 (643)
...++++|++|+||+++.-.....+.. ...+.++|.|+.++...++ ..++.|.+|+.++|..|.+.|..
T Consensus 178 ~~~~~~~dl~LviGTSl~V~p~~~~~~~a~~~~~~~i~IN~~~~~~d~--~~d~~i~g~~~evl~~l~~~l~~ 248 (252)
T d1ma3a_ 178 IEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADP--IFDVKIIGKAGEVLPKIVEEVKR 248 (252)
T ss_dssp HHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGG--GCSEEEESCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCeEEEecCCceeeechHHHHHHHHcCCeEEEECCCCCCCCC--ceeEEEECCHHHHHHHHHHHHHH
Confidence 456789999999999986444333221 1235789999998876543 45899999999999999877664
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=93.76 E-value=0.17 Score=45.04 Aligned_cols=148 Identities=14% Similarity=0.116 Sum_probs=91.7
Q ss_pred cHHHHHHHHHHHCCCCEEEEccCCCcHHHHHHHhhCC-CeEEecCC--hhHHHHHHHHHHHHh-CCcEEEEEccchhhHH
Q 040733 71 KGADIIVEALERQGVTTVFAYPGGASIEIHQSLTRSN-IRSILPRH--EQGGIFAAEGYARSS-GTPGVCLVSSGPGVTN 146 (643)
Q Consensus 71 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-i~~i~~~h--E~~A~~~A~Gyar~s-g~~gv~~~t~GpG~~N 146 (643)
...+.|-+.|.+. ..++.=-|+....+...+.-.. -+++.+-. =..+.-+|.|.+.+. +++.+|++-=| ++.-
T Consensus 16 ~~~~~l~~~l~~d--~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~p~AiGa~la~p~~~vv~i~GDG-~f~~ 92 (183)
T d1q6za3 16 TVFDTLNDMAPEN--AIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDG-SANY 92 (183)
T ss_dssp HHHHHHHHHSCTT--CEEEEECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEEEEHH-HHTT
T ss_pred HHHHHHHHhCCCC--cEEEEcCCchHHHHHHHHhhccccccccccCCCcccchhHHHhhhhhccccceEEecccc-cccc
Confidence 3444444444432 2344445666666666654333 34444321 023556788888876 67777765444 4445
Q ss_pred HHHHHHHhhhCCCCEEEEeCCCcccc---------cCC----CCCCccCHHHHhhccceeeeEeCCcCcHHHHHHHHHHH
Q 040733 147 IMTGLMDAYSDSIPILAITGQVSQKL---------LGT----DAFQEIPVVEVTRYMTKHNYLVLDVDDIPRIIKEAFFI 213 (643)
Q Consensus 147 ~~~gl~~A~~~~vPvlvItg~~~~~~---------~g~----~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~ 213 (643)
.+..+..|...++|+++|.-+..... .+. ..+...|...+.+.+--+.+++.+++++.+.|++|+.
T Consensus 93 ~~~el~ta~~~~lpv~~iV~nN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~- 171 (183)
T d1q6za3 93 SISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQLKGSLQEALS- 171 (183)
T ss_dssp TGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESSHHHHHHHHHHHHT-
T ss_pred ccHHHHHHHHhCCCEEEEEEeccccchhhhhhhcccccCcccccCCCccHHHHHHHcCCEEEEECCHHHHHHHHHHHHh-
Confidence 56678889999999888775433110 011 1245568888888886678899998888888887764
Q ss_pred hhcCCCCeEEEEc
Q 040733 214 ATSGRPGPVLIDI 226 (643)
Q Consensus 214 A~s~~~GPV~i~i 226 (643)
..||+.|+|
T Consensus 172 ----~~gp~lieV 180 (183)
T d1q6za3 172 ----AKGPVLIEV 180 (183)
T ss_dssp ----CSSCEEEEE
T ss_pred ----CCCcEEEEE
Confidence 258999987
|
| >d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase sirtuin-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.044 Score=52.35 Aligned_cols=66 Identities=9% Similarity=0.099 Sum_probs=47.8
Q ss_pred HHHHhhhcCCEEEEecCccCccccCccc-cc-cCCceEEEEcCCcccccCCCCCCeeEecCHHHHHHHHH
Q 040733 328 YANYAVNECDLLLAAGVRFNERMTSKLE-DF-ATRAKIVHIDIDSNEIGKVKLPDVSICADAKLVFNRMN 395 (643)
Q Consensus 328 ~~~~~l~~aDlvL~vG~~~~~~~t~~~~-~~-~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~L~~L~ 395 (643)
.+.+.++++|++|++|+++.-.....+- .. ..++++|.|+.++...+. ..++.|.+|+.++|.+|+
T Consensus 199 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vv~IN~~~t~~d~--~~d~~i~g~~~~vL~~l~ 266 (267)
T d2b4ya1 199 EVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN--RFRFHFQGPCGTTLPEAL 266 (267)
T ss_dssp HHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCCEEEEESSCCTTGG--GSSEEEESCHHHHHHHHT
T ss_pred HHHHhhhhCCeEEEECCCCeecCHHHHHHHHHHcCCcEEEEeCCCCCCCC--ccCEEEeCCHHHHHHHHh
Confidence 3456778999999999998643333321 12 235788999988876543 468999999999998874
|
| >d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: Hst2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=0.074 Score=51.34 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=45.1
Q ss_pred hhcCCEEEEecCccCccccCcc-ccccCCceEEEEcCCcccc--cCCCCCCeeEecCHHHHHHHHHHHH
Q 040733 333 VNECDLLLAAGVRFNERMTSKL-EDFATRAKIVHIDIDSNEI--GKVKLPDVSICADAKLVFNRMNMIL 398 (643)
Q Consensus 333 l~~aDlvL~vG~~~~~~~t~~~-~~~~~~~~iI~Id~d~~~i--~~~~~~~~~i~~D~~~~L~~L~~~l 398 (643)
+.++|++|+||+++.-+.-.++ .....+.++|.|+.++..- ......|+.|.+|+.++|+.|.+.|
T Consensus 209 ~~~aDlllviGTSl~V~Pa~~l~~~a~~~~~~viIN~e~~~~~~~~~~~~Dl~I~g~~~~vl~~L~~~L 277 (289)
T d1q1aa_ 209 HPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 277 (289)
T ss_dssp -CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHH
T ss_pred cccCCEEEEECCCceecCHHHHHHHHHcCCCEEEEeCCCCCCcccccCCcCEEEeCCHHHHHHHHHHHc
Confidence 3489999999999853322222 2233456777788766421 1234568999999999999998765
|
| >d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: Sirt2 histone deacetylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.093 Score=51.27 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=47.0
Q ss_pred HHHhhhcCCEEEEecCccCccccCccccc-cCCceEEEEcCCccccc------------------CCCCCCeeEecCHHH
Q 040733 329 ANYAVNECDLLLAAGVRFNERMTSKLEDF-ATRAKIVHIDIDSNEIG------------------KVKLPDVSICADAKL 389 (643)
Q Consensus 329 ~~~~l~~aDlvL~vG~~~~~~~t~~~~~~-~~~~~iI~Id~d~~~i~------------------~~~~~~~~i~~D~~~ 389 (643)
+.+.+.+||++|++|+++.-....++-.. ..+...|.|+.++.... .....|+.+.||+.+
T Consensus 214 a~~~~~~aDllIViGTSL~V~Paa~l~~~a~~~~~~v~IN~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~gdcd~ 293 (323)
T d1j8fa_ 214 MQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQ 293 (323)
T ss_dssp HHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHH
T ss_pred HHHHHhCCCEEEEECCCCeecCHHHHHHHHHcCCCEEEEECCCCCCCCccchhhccccccccccccCCcceEEEccCHHH
Confidence 45677899999999999854333333222 23445566887765422 112348999999999
Q ss_pred HHHHHHHHH
Q 040733 390 VFNRMNMIL 398 (643)
Q Consensus 390 ~L~~L~~~l 398 (643)
+++.|.+.|
T Consensus 294 ~~~~l~~~l 302 (323)
T d1j8fa_ 294 GCLALAELL 302 (323)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999998765
|
| >d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Transhydrogenase domain III (dIII) domain: Transhydrogenase domain III (dIII) species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.69 E-value=0.81 Score=39.31 Aligned_cols=128 Identities=14% Similarity=0.209 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCCCcEEEEcCCch--hhHH---HHHHHHHHhCCceeecCCCCCCCCCCCCCcccccC-------------
Q 040733 261 LRQTLKLIVESKNPVLCVGGGCL--NSSE---ELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVG------------- 322 (643)
Q Consensus 261 i~~~~~~L~~AkrPvIl~G~g~~--~~~~---~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g------------- 322 (643)
.++++.+|..|++.+|+-|+|.. .+.. +|.++.+..|.-|--. -||..--+-|
T Consensus 13 a~d~a~~L~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~g~~V~fa---------IHPVAGRMPGHmNVLLAEa~VpY 83 (180)
T d1pnoa_ 13 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYA---------IHPVAGRMPGHMNVLLAEANVPY 83 (180)
T ss_dssp HHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEE---------ECTTCTTSTTHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCeEEEECCchHHHHHHHHHHHHHHHHHHhcCcceEEE---------eehhhhhhhcchhheeeeecCCH
Confidence 56788999999999999999865 4444 4555555557776321 1333211112
Q ss_pred --CCCcHHHHHhhhcCCEEEEecCccC-------ccccC--cc---ccccCCceEEEEc--CCccccc--CC--C-CCCe
Q 040733 323 --MFGTVYANYAVNECDLLLAAGVRFN-------ERMTS--KL---EDFATRAKIVHID--IDSNEIG--KV--K-LPDV 381 (643)
Q Consensus 323 --~~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t~--~~---~~~~~~~~iI~Id--~d~~~i~--~~--~-~~~~ 381 (643)
..-....|.-+.+.|++|++|..-- +..+. +. +-| +..++|.+- ..+..-| .. + .-+.
T Consensus 84 d~v~emdeiN~~f~~~Dv~lViGANDvVNPaA~~dp~spi~GMPvl~v~-kak~Viv~KRsm~~GyaGv~NpLF~~~nt~ 162 (180)
T d1pnoa_ 84 DEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVE-KAGTVLFIKRSMASGYAGVENELFFRNNTM 162 (180)
T ss_dssp GGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGG-GSSEEEEEESSSCCCTTCCCCGGGTSTTEE
T ss_pred HHHcChhhhcchhhhccEEEEecccceeChhhhcCCCCcccCCceeeee-cCCEEEEEECCccCCcCCCCCcceEcCCcE
Confidence 0111345666889999999997521 11111 11 112 122455442 1111111 11 1 2345
Q ss_pred eEecCHHHHHHHHHHHH
Q 040733 382 SICADAKLVFNRMNMIL 398 (643)
Q Consensus 382 ~i~~D~~~~L~~L~~~l 398 (643)
-+.||++..+++|...|
T Consensus 163 MlfGDAK~~l~~l~~~l 179 (180)
T d1pnoa_ 163 MLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp EEESCHHHHHHHHHHHH
T ss_pred EEechHHHHHHHHHHhc
Confidence 56799999999988654
|
| >d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Transhydrogenase domain III (dIII) domain: Transhydrogenase domain III (dIII) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.03 E-value=0.73 Score=39.41 Aligned_cols=130 Identities=16% Similarity=0.229 Sum_probs=73.1
Q ss_pred HHHHHHHHHhCCCcEEEEcCCch--hhH---HHHHHHHHHhCCceeecCCCCCCCCCCCCCcccccCC------------
Q 040733 261 LRQTLKLIVESKNPVLCVGGGCL--NSS---EELRKFVGLTGIPVTCTTMGLGLFPCTDELCLRMVGM------------ 323 (643)
Q Consensus 261 i~~~~~~L~~AkrPvIl~G~g~~--~~~---~~l~~lae~lg~PV~tt~~gkg~~~~~hpl~lG~~g~------------ 323 (643)
.++++.+|..|++.+|+-|+|.. .+. .+|.++.+..|.-|--- -||..--+-|.
T Consensus 8 ~~~~a~~l~~A~~ViIVPGYGmAvaqaQ~~v~el~~~L~~~g~~V~fa---------IHPVAGRMPGHmNVLLAEA~VpY 78 (177)
T d1d4oa_ 8 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFG---------IHPVAGRMPGQLNVLLAEAGVPY 78 (177)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEE---------ECTTCSSSTTHHHHHHHHHTCCG
T ss_pred HHHHHHHHHhCCeEEEecChHHHHHHHHHHHHHHHHHHHHcCCeEEEE---------eccccccccchhhhhhhhcCCCH
Confidence 56788999999999999999865 344 44555566667776321 14432211120
Q ss_pred ---CCcHHHHHhhhcCCEEEEecCccC-------cccc--Ccc---ccccCCceEEEEcCC--ccc--ccC--CC-CCCe
Q 040733 324 ---FGTVYANYAVNECDLLLAAGVRFN-------ERMT--SKL---EDFATRAKIVHIDID--SNE--IGK--VK-LPDV 381 (643)
Q Consensus 324 ---~~~~~~~~~l~~aDlvL~vG~~~~-------~~~t--~~~---~~~~~~~~iI~Id~d--~~~--i~~--~~-~~~~ 381 (643)
.--...|.-+.+.|++|++|..-- +..+ .+. +-|. ..++|.+--. +.. +.. .+ .-+.
T Consensus 79 d~v~emdeIN~~f~~~DvalVIGANDvVNPaA~~d~~SpI~GMPvl~v~k-ak~viv~KRsm~~GyaGv~NpLF~~~nt~ 157 (177)
T d1d4oa_ 79 DIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYAAVDNPIFYKPNTA 157 (177)
T ss_dssp GGEEEHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGG-SSCEEEEESSSCCCTTCCCCGGGGSTTEE
T ss_pred HHHhChHhhCcchhhccEEEEeccccccCCcccCCCCCccCCCceeEhhh-CCEEEEEECCCCCCccCCcCcceecCCcE
Confidence 011344566889999999997521 1111 011 1121 2345544211 111 111 12 2345
Q ss_pred eEecCHHHHHHHHHHHHhh
Q 040733 382 SICADAKLVFNRMNMILES 400 (643)
Q Consensus 382 ~i~~D~~~~L~~L~~~l~~ 400 (643)
-+.||++..++.|...+++
T Consensus 158 MlfGDAk~~~~~l~~~lke 176 (177)
T d1d4oa_ 158 MLLGDAKKTCDALQAKVRE 176 (177)
T ss_dssp EEESCHHHHHHHHHHHHHT
T ss_pred EEechHHHHHHHHHHHHhc
Confidence 5679999999999877653
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.51 E-value=0.3 Score=48.36 Aligned_cols=105 Identities=21% Similarity=0.193 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhCCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCC-CCC--ccCHHHHhhccce
Q 040733 119 GIFAAEGYARSSGTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTD-AFQ--EIPVVEVTRYMTK 192 (643)
Q Consensus 119 A~~~A~Gyar~sg~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~~Q--~~d~~~~~~~~tk 192 (643)
|+.+|.+. |..|+..|+++..|=|++| ..-++--|..-++|||+++=+..... ++. ..| ..+...-...+--
T Consensus 148 AvG~A~a~-k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~ai-st~~~~~~~~~~~~~r~~~~Gi 225 (365)
T d1w85a_ 148 AAGVALGL-KMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAI-STPVEKQTVAKTLAQKAVAAGI 225 (365)
T ss_dssp HHHHHHHH-HHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEET-TEEGGGTCSCSCSGGGGGGTTC
T ss_pred hhhHHhhh-hhcccCCceeeeccCCcccchhHHHHHHHhhhcccCceEEEEEecccc-cccccccccccchhhhcccccC
Confidence 44444443 3457788888899988876 55677788888999999986432211 110 001 0122233344433
Q ss_pred eeeEe--CCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 193 HNYLV--LDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 193 ~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
..++| .++.++.+.+.+|+..++.++ ||++|++
T Consensus 226 ~~~~vDG~D~~~v~~a~~~A~~~~R~g~-gP~lie~ 260 (365)
T d1w85a_ 226 PGIQVDGMDPLAVYAAVKAARERAINGE-GPTLIET 260 (365)
T ss_dssp CEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEE
T ss_pred ceEEEecchhHHHHHHHHHHHHHhhcCC-ccEEEEe
Confidence 44455 466788899999999999876 9999987
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.58 E-value=0.41 Score=47.88 Aligned_cols=107 Identities=20% Similarity=0.086 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhCCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCCCCC--ccCHHHHhhcccee
Q 040733 119 GIFAAEGYARSSGTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTDAFQ--EIPVVEVTRYMTKH 193 (643)
Q Consensus 119 A~~~A~Gyar~sg~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~~~Q--~~d~~~~~~~~tk~ 193 (643)
|+.+|.+.-+ .++-+|+++..|=|+++ ..-+|--|..-++|||+|+-+........-..| ..+.....+.+--.
T Consensus 166 A~G~A~a~k~-~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~ 244 (395)
T d2bfda1 166 AVGAAYAAKR-ANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIM 244 (395)
T ss_dssp HHHHHHHHHH-HTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCE
T ss_pred HHHHHHHhhh-cCcccccccccCCCCccchhHHHHHHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhccccc
Confidence 3344443322 35567777888888776 556777788899999999854332111000001 01222334444444
Q ss_pred eeEe--CCcCcHHHHHHHHHHHhhcCCCCeEEEEcc
Q 040733 194 NYLV--LDVDDIPRIIKEAFFIATSGRPGPVLIDIP 227 (643)
Q Consensus 194 ~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP 227 (643)
..+| .++.++-+.+++|+..+++++ ||++|++-
T Consensus 245 ~~~vDG~Dv~aV~~a~~~A~~~~R~g~-gP~lIE~~ 279 (395)
T d2bfda1 245 SIRVDGNDVFAVYNATKEARRRAVAEN-QPFLIEAM 279 (395)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred eeEEecCcHHHHHHHHHHhhhhhhccC-CceEEEEe
Confidence 4555 467788889999999999876 99999873
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.27 E-value=0.34 Score=47.92 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=64.4
Q ss_pred HHHHHHHHH---hCCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCC---CCCccCHHHHhhccc
Q 040733 121 FAAEGYARS---SGTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTD---AFQEIPVVEVTRYMT 191 (643)
Q Consensus 121 ~~A~Gyar~---sg~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~---~~Q~~d~~~~~~~~t 191 (643)
-.|.|+|.+ .++..|+++..|=|+++ ..-+|--|..-+.|||+|+=+..... .+. ..-..++......+.
T Consensus 143 p~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yai-st~~~~~~~~~~~~~~~~~~~ 221 (361)
T d2ozla1 143 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGM-GTSVERAAASTDYYKRGDFIP 221 (361)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEET-TEEHHHHCSCCCGGGTTTTSC
T ss_pred hhHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhhhhhhccCceEEEEEeCCccc-CCCchhccccccccccccccc
Confidence 455555555 36677888888888877 45577777888999999985432211 000 000011111111222
Q ss_pred eeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 192 KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 192 k~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
-....=.++.++.+.+++|+..++.++ ||++|++
T Consensus 222 ~~~vdGnD~~av~~a~~~A~~~~R~g~-gP~liE~ 255 (361)
T d2ozla1 222 GLRVDGMDILCVREATRFAAAYCRSGK-GPILMEL 255 (361)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHTTC-CCEEEEE
T ss_pred eEEeccCCchHHHHHHHHHHHHHhccC-CCEEEEE
Confidence 222333466778899999999999886 9999987
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=86.62 E-value=1.3 Score=44.11 Aligned_cols=104 Identities=21% Similarity=0.110 Sum_probs=65.5
Q ss_pred HHHHHHHH---HhCCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCC-CCC---ccCHHHHhhcc
Q 040733 121 FAAEGYAR---SSGTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTD-AFQ---EIPVVEVTRYM 190 (643)
Q Consensus 121 ~~A~Gyar---~sg~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~~Q---~~d~~~~~~~~ 190 (643)
--|.|+|. ..|+..|+++..|=|+++ ..-+|--|..-+.|||+++-+..... ++. ..| ..+.......+
T Consensus 188 p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvifv~eNN~~ai-st~~~~~~~~~~~~~~ra~~~ 266 (407)
T d1qs0a_ 188 VQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAI-STFQAIAGGESTTFAGRGVGC 266 (407)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEET-TEEGGGGTTTTCCSTHHHHHT
T ss_pred chhhhhHHHHhhccCcceecccccccccccchHHHHHHHHhccCcceEEEEEEecccc-cccchhhhccchhHHHHHHhc
Confidence 34455543 346677888888888877 55678888888999999985433211 110 001 01111222222
Q ss_pred ceeeeEe--CCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 191 TKHNYLV--LDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 191 tk~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
--.+++| .++.++..++++|+..++++. ||++|++
T Consensus 267 Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~-gP~lIE~ 303 (407)
T d1qs0a_ 267 GIASLRVDGNDFVAVYAASRWAAERARRGL-GPSLIEW 303 (407)
T ss_dssp TCEEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEE
T ss_pred CcceEEeccccHHHHHHHHHHHHHHHhcCC-CceEEEE
Confidence 2233444 566778899999999999876 9999987
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.55 E-value=0.67 Score=41.39 Aligned_cols=117 Identities=9% Similarity=-0.012 Sum_probs=71.0
Q ss_pred CeEEecCCh---hHHHHHHHHHHHHh-----CCcEEEEEccchhhHHHHHHHHHhhhCCCCEEEEeCCCccc-----ccC
Q 040733 108 IRSILPRHE---QGGIFAAEGYARSS-----GTPGVCLVSSGPGVTNIMTGLMDAYSDSIPILAITGQVSQK-----LLG 174 (643)
Q Consensus 108 i~~i~~~hE---~~A~~~A~Gyar~s-----g~~gv~~~t~GpG~~N~~~gl~~A~~~~vPvlvItg~~~~~-----~~g 174 (643)
-+++....= ..+.-+|.|.|.+. .|..+|++-=| ++.-.+..|..|...++|+++|.-+.... ..+
T Consensus 44 ~~~~~~~~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~i~GDG-sf~m~~~eL~ta~~~~l~i~~iV~nN~~y~~~~~~~~ 122 (196)
T d1pvda3 44 TYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDG-SLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHG 122 (196)
T ss_dssp CEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHH-HHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHTTSC
T ss_pred CEEEccCCcCcccccccchhHHHHHHHhcCCCCceeeccCcc-ccccccccccccccccccceEEEEeCCccceeEeecc
Confidence 455544432 23455666666653 57777775544 45545678999999999999887654421 111
Q ss_pred CC----CCCccCHHHHhhccc---eeeeEeCCcCcHHHHHHHHHHHhhcCCCCeEEEEccc
Q 040733 175 TD----AFQEIPVVEVTRYMT---KHNYLVLDVDDIPRIIKEAFFIATSGRPGPVLIDIPV 228 (643)
Q Consensus 175 ~~----~~Q~~d~~~~~~~~t---k~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~i~iP~ 228 (643)
.. .+...|...+.+.+- -+.+++.+++++...++++. .....||+.|+|-.
T Consensus 123 ~~~~~~~~~~~d~~~la~a~G~~~~~~~~v~~~~el~~al~~~~---~~~~~~~~lIeV~i 180 (196)
T d1pvda3 123 PKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKS---FNDNSKIRMIEIML 180 (196)
T ss_dssp TTCGGGCCCCCCGGGHHHHTTCSSEEEEEECBHHHHHHHHTCTT---TTSCSSEEEEEEEC
T ss_pred CccccccCCCCCHHHHHHHhCCCCceEEEecCHHHHHHHHHHHH---HhCCCCcEEEEEEC
Confidence 11 122346667776663 23467888888877776542 22345899998843
|
| >d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Thermus thermophilus [TaxId: 274]
Probab=86.54 E-value=1.1 Score=39.62 Aligned_cols=148 Identities=15% Similarity=0.051 Sum_probs=87.6
Q ss_pred HHHHHHHHHHCCCCEEEE----ccCC---CcHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 73 ADIIVEALERQGVTTVFA----YPGG---ASIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 73 a~~lv~~L~~~GV~~vFg----~PG~---~~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.++|.+.+++..=-.++| .+|+ ....+++..-. =|++ ....|++...+|.|.|...-||-|++-. +.+
T Consensus 10 ~~al~e~m~~d~~v~~~g~Dv~~~gg~~~~~~~~~~~~~p--~R~~~~pIaE~~~ig~a~G~A~~G~~Piv~~~~--~~f 85 (186)
T d1umdb1 10 NRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGP--DRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQF--ADY 85 (186)
T ss_dssp HHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCT--TTEEECCSCHHHHHHHHHHHHHHTCEEEEECSS--GGG
T ss_pred HHHHHHHHHhCcCEEEEecCcCCCCCcccccHHHHHhcCc--ceeeecccchhhhhhhHHHHHhccCceeEEEee--cch
Confidence 445555555553233333 2333 23344444322 2344 6789999999999999887777666433 333
Q ss_pred HH-HHHHH----HHhh-----hCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeee-EeCCcCcHHHHHHHHHHH
Q 040733 145 TN-IMTGL----MDAY-----SDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNY-LVLDVDDIPRIIKEAFFI 213 (643)
Q Consensus 145 ~N-~~~gl----~~A~-----~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~~A~~~ 213 (643)
+. ++.-| +.-. ....|+++.++.-... +...+|..+...+++.+.-... ...++.++..+++.|++
T Consensus 86 ~~~~~dqi~n~~~~~~~~~~g~~~~~~~~~~~~G~~~--~g~~hhs~~~~~~~~~iPgl~V~~Ps~~~d~~~~l~~a~~- 162 (186)
T d1umdb1 86 IFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGV--RGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIR- 162 (186)
T ss_dssp CGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEECSSS--SCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHHHH-
T ss_pred hhhhHHHHHHhHHHhccccCceeeeeeeeeccccccC--CCccccccCHHHHhhhccceeeeecCCHHHHHHHHHHHHh-
Confidence 22 33233 2221 2356888777533222 2234555567789998876544 35677788777777764
Q ss_pred hhcCCCCeEEEEcccchh
Q 040733 214 ATSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 214 A~s~~~GPV~i~iP~Dv~ 231 (643)
.++||++-.|..+.
T Consensus 163 ----~~~Pv~i~e~k~ly 176 (186)
T d1umdb1 163 ----DEDPVVFLEPKRLY 176 (186)
T ss_dssp ----CSSCEEEEEEGGGS
T ss_pred ----CCCcEEEEechHHh
Confidence 25899999998764
|
| >d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module species: Pseudomonas putida [TaxId: 303]
Probab=84.55 E-value=3.5 Score=36.75 Aligned_cols=152 Identities=13% Similarity=0.052 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHCCCCEEEE----ccCC---CcHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchh
Q 040733 72 GADIIVEALERQGVTTVFA----YPGG---ASIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPG 143 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg----~PG~---~~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG 143 (643)
..++|.+.|++.-=-.+|| -+|+ ....|.+.+-. =|++ ....|++...+|.|.|...-||-|.+-- .==
T Consensus 11 i~~al~e~m~~d~~v~~~Gedv~~~Gg~f~~t~gl~~kfgp--~Rv~dtpIaE~~~vG~A~GlA~~G~rPvve~~~-~df 87 (204)
T d1qs0b1 11 LRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGK--SRVFDAPISESGIVGTAVGMGAYGLRPVVEIQF-ADY 87 (204)
T ss_dssp HHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCT--TTEEECCSCHHHHHHHHHHHHHHTCEEEEECSC-GGG
T ss_pred HHHHHHHHHhhCCCEEEEecCCCccCCccccchHHHHHHhh--hheecccccceeehhHHHHHhcCCCcEEEEEEe-cch
Confidence 4455666666654444553 2332 33446655522 2444 6789999999999999877777666432 222
Q ss_pred hHHHHHHHHHh---------hhCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHH
Q 040733 144 VTNIMTGLMDA---------YSDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFI 213 (643)
Q Consensus 144 ~~N~~~gl~~A---------~~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~ 213 (643)
...++.-|.+- ..-.+||++.+..-.. .+.+.++......+++.+.....- ..++.|+..+++.|++.
T Consensus 88 ~~~a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~--~~~g~~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~~a~~~ 165 (204)
T d1qs0b1 88 FYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGG--IYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIEC 165 (204)
T ss_dssp CGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCS--SSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHhhcccccCcccceEEEcCcccc--cCcccccccCHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhC
Confidence 22333444332 2457788888754222 233445555666899988765544 45677888888887763
Q ss_pred hhcCCCCeEEEEcccchhhh
Q 040733 214 ATSGRPGPVLIDIPVDVQLE 233 (643)
Q Consensus 214 A~s~~~GPV~i~iP~Dv~~~ 233 (643)
++||++--|+-+...
T Consensus 166 -----~~Pvi~~e~k~ly~~ 180 (204)
T d1qs0b1 166 -----DDPVIFLEPKRLYNG 180 (204)
T ss_dssp -----SSCEEEEEEGGGSSS
T ss_pred -----CCcEEEEeeHHHhCC
Confidence 489999888876554
|
| >d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.51 E-value=5.3 Score=35.12 Aligned_cols=151 Identities=17% Similarity=0.061 Sum_probs=95.1
Q ss_pred HHHHHHHHHHCCCCEEEEc----cCC---CcHHHHHHHhhCCCeEE-ecCChhHHHHHHHHHHHHhCCcEEEEEccchhh
Q 040733 73 ADIIVEALERQGVTTVFAY----PGG---ASIEIHQSLTRSNIRSI-LPRHEQGGIFAAEGYARSSGTPGVCLVSSGPGV 144 (643)
Q Consensus 73 a~~lv~~L~~~GV~~vFg~----PG~---~~~~l~~al~~~~i~~i-~~~hE~~A~~~A~Gyar~sg~~gv~~~t~GpG~ 144 (643)
.++|.+.|++..=-.+||- +|+ ....|.+..-. -|++ ....|++...+|.|.|...-||-|++ ...-=.
T Consensus 11 ~~al~~~m~~d~~v~i~Gedv~~~gg~f~~t~gl~~~fg~--~Rv~dtPisE~~~~G~a~G~A~~G~rPive~-~~~df~ 87 (192)
T d2ozlb1 11 NQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGD--KRIIDTPISEMGFAGIAVGAAMAGLRPICEF-MTFNFS 87 (192)
T ss_dssp HHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCT--TTEEECCSCHHHHHHHHHHHHHTTCEEEEEC-SSGGGG
T ss_pred HHHHHHHHhhCCCEEEEecCCCccCCccccccchhhhccc--ceEEecccchhHHHHHHHHHHhcCCceEEEE-Eeccch
Confidence 4455566666654445653 443 34455555432 2444 67899999999999997666766664 344344
Q ss_pred HHHHHHHHHhh---------hCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHh
Q 040733 145 TNIMTGLMDAY---------SDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIA 214 (643)
Q Consensus 145 ~N~~~gl~~A~---------~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A 214 (643)
..++.-|.+-. ....||++.+.--.. .+.+.++.-+...++..+.-.... ..++.|+..+++.|++
T Consensus 88 ~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~--~g~g~~Hs~~~~~~~~~~PGl~Vv~Ps~p~da~gll~~Ai~-- 163 (192)
T d2ozlb1 88 MQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS--AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIR-- 163 (192)
T ss_dssp GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCC--SSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHHHHHH--
T ss_pred hhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCC--CCcccccccchHHhhccCCceEEEecCCHHHHHHHHHHHHh--
Confidence 44555554432 367888888753332 233344444456788888654444 5678889999888887
Q ss_pred hcCCCCeEEEEcccchhhh
Q 040733 215 TSGRPGPVLIDIPVDVQLE 233 (643)
Q Consensus 215 ~s~~~GPV~i~iP~Dv~~~ 233 (643)
.++||.+-=|..+...
T Consensus 164 ---~~~Pvi~~E~k~ly~~ 179 (192)
T d2ozlb1 164 ---DNNPVVVLENELMYGV 179 (192)
T ss_dssp ---SSSCEEEEECHHHHTC
T ss_pred ---CCCCEEEEEcHHHhCC
Confidence 3589998888877654
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=84.45 E-value=1 Score=44.40 Aligned_cols=106 Identities=24% Similarity=0.249 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccchhhHH---HHHHHHHhhhCCCCEEEEeCCCcccccCCC-C--CCccCHHHHhhccc
Q 040733 118 GGIFAAEGYARSSGTPGVCLVSSGPGVTN---IMTGLMDAYSDSIPILAITGQVSQKLLGTD-A--FQEIPVVEVTRYMT 191 (643)
Q Consensus 118 ~A~~~A~Gyar~sg~~gv~~~t~GpG~~N---~~~gl~~A~~~~vPvlvItg~~~~~~~g~~-~--~Q~~d~~~~~~~~t 191 (643)
-|+.+|.+.-+ .++-.|+++..|-|++| ..-+|--|..-+.|+|+++-+..... ++. . .-..+..+..+.+-
T Consensus 147 ~a~G~A~a~k~-~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~ai-st~~~~~~~~~~~~~~a~~~g 224 (362)
T d1umda_ 147 PAAGAAISMKL-LRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAI-SVDYRHQTHSPTIADKAHAFG 224 (362)
T ss_dssp HHHHHHHHHHH-TTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEET-TEEHHHHCSSSCSGGGGGGTT
T ss_pred HHHHHHHhhhc-ccccceeeeeccCCcccCCchHHHHHHhhhccCCeeeeeeeccccc-ccccccccccchhhhhhhhhe
Confidence 34444444332 35567777888998887 44577777888999999985432211 100 0 00011122333332
Q ss_pred eeeeEe--CCcCcHHHHHHHHHHHhhcCCCCeEEEEc
Q 040733 192 KHNYLV--LDVDDIPRIIKEAFFIATSGRPGPVLIDI 226 (643)
Q Consensus 192 k~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~i~i 226 (643)
-..+++ .++.++-+.+.+|+..++++. ||++|++
T Consensus 225 i~~~~vDGnDv~~v~~a~~~Ai~~~R~g~-gP~lIE~ 260 (362)
T d1umda_ 225 IPGYLVDGMDVLASYYVVKEAVERARRGE-GPSLVEL 260 (362)
T ss_dssp SCEEEEETTCHHHHHHHHHHHHHHHHTTC-CCEEEEE
T ss_pred eeeeEeccchHHHHHHHHHHHHHHHHhcC-CCEEEEc
Confidence 233344 567788899999999999876 9999987
|
| >d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module species: Pseudomonas putida [TaxId: 303]
Probab=81.86 E-value=3 Score=37.18 Aligned_cols=110 Identities=9% Similarity=0.030 Sum_probs=65.7
Q ss_pred CCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCccccCC-HHHHHHH---------HHhCCCeEEEEEeCCCchh
Q 040733 474 ARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGSFIMN-LQELAAI---------KAENIPVKILLINNQYLGM 543 (643)
Q Consensus 474 p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGsf~m~-~~eL~Ta---------~~~~lpv~ivV~NN~~~g~ 543 (643)
|.+++..+- +=-.-++.|+|++++. .+.|+.+-=..|++- +..|.+- .+.+.|+++....-.+++
T Consensus 51 p~Rv~dtpI--aE~~~vG~A~GlA~~G--~rPvve~~~~df~~~a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~~~- 125 (204)
T d1qs0b1 51 KSRVFDAPI--SESGIVGTAVGMGAYG--LRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIY- 125 (204)
T ss_dssp TTTEEECCS--CHHHHHHHHHHHHHHT--CEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSS-
T ss_pred hhheecccc--cceeehhHHHHHhcCC--CcEEEEEEecchhhHHHHHHHHHHHHhhcccccCcccceEEEcCcccccC-
Confidence 556665432 1122577888888874 455555555556653 4445332 134556666655422211
Q ss_pred hHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCChhHHHHHHHHHHhCCCcEEE
Q 040733 544 NVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTKKKDVRAAIQLMLETPGPYLL 610 (643)
Q Consensus 544 ~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~al~~~gp~lI 610 (643)
+-+ .+..+...+...+ |++-+.-.++.|.+..++.+++.++|+++
T Consensus 126 ------------------~g~----~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~~a~~~~~Pvi~ 171 (204)
T d1qs0b1 126 ------------------GGQ----THSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIF 171 (204)
T ss_dssp ------------------CCS----SSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHHSSSCEEE
T ss_pred ------------------ccc----ccccCHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCcEEE
Confidence 000 1223333555555 88888889999999999999999999865
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Probab=81.57 E-value=5.1 Score=35.33 Aligned_cols=149 Identities=11% Similarity=0.021 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCChhHHH---HHHhccccCCCeEEecCCCcccccchHHHHHHHHhCCCCeEEEEecCcc
Q 040733 437 QYAIQILNELTDDEETIISTGVGQHQMW---AIQFYMYKRARQLLTSSGFGSMGFGLPAAMGAAVANPGAIVVDIDGDGS 513 (643)
Q Consensus 437 ~~~~~~L~~~l~~~d~iv~~d~G~~~~~---~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGaalA~p~~~Vv~i~GDGs 513 (643)
..++..|.+.+|+ =...+.|.+.+..- ...++.-..|.+++..+-.= -..++.|-|.++.. +. +.+++--.
T Consensus 30 g~~L~~la~~~p~-liggsADL~~St~t~~~~~~~f~~~~p~r~i~~GIaE--q~M~~iAaGlA~~g-~~--~p~~stf~ 103 (195)
T d2r8oa1 30 QNAIEAFGPLLPE-FLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVRE--FGMTAIANGISLHG-GF--LPYTSTFL 103 (195)
T ss_dssp HHHHHHHTTTCTT-EEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCH--HHHHHHHHHHHHHS-SC--EEEEEEEG
T ss_pred HHHHHHHHhhccc-ceecccccccccccccccccccccCCCCCeeeeeeeh--hhHHHHHHHHHhhC-Cc--eEEeecce
Confidence 4566677777775 33344566543210 01233334566777542210 00345566666543 22 23333333
Q ss_pred ccC--CHHHHHHHHHhCCCeEEEEEeCCCchhhHHHHHHhhcccccccccCCCCCCCCCCCCHHHHHhHC-CCCEEEeCC
Q 040733 514 FIM--NLQELAAIKAENIPVKILLINNQYLGMNVEYEDRYFEANRANSFLGDPLRKSEIFPDMLKFAEAC-GIPAARVTK 590 (643)
Q Consensus 514 f~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~g~p~~~~~~~~d~~~lA~a~-G~~~~~V~~ 590 (643)
++. ....+-...-++.++++|+... +.+. +++ .. .+...+--.+.+++ ++..++..+
T Consensus 104 ~f~~~~~~~ir~~~~~~~~~v~v~~h~-g~~~---------g~d-G~---------THq~iEDia~lR~iPn~~v~~P~D 163 (195)
T d2r8oa1 104 MFVEYARNAVRMAALMKQRQVMVYTHD-SIGL---------GED-GP---------THQPVEQVASLRVTPNMSTWRPCD 163 (195)
T ss_dssp GGGGTTHHHHHHHHHTTCCCEEEEECC-SGGG---------CTT-CT---------TTCCSSHHHHHHTSTTCEEECCSS
T ss_pred eeeccccchhhccccccccceeeeccc-cccc---------ccc-ch---------hhHHHHHHHHHHhhCCcEEEecCC
Confidence 332 3555767777778877765433 3331 110 01 12334444555554 778888899
Q ss_pred hhHHHHHHHHHHh-CCCcEEEE
Q 040733 591 KKDVRAAIQLMLE-TPGPYLLD 611 (643)
Q Consensus 591 ~~eL~~al~~al~-~~gp~lIe 611 (643)
..|++.+++.+++ .+||+.|-
T Consensus 164 ~~E~~~a~~~a~~~~~gP~ylR 185 (195)
T d2r8oa1 164 QVESAVAWKYGVERQDGPTALI 185 (195)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEE
Confidence 9999999999886 67998774
|
| >d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=80.37 E-value=4.7 Score=35.46 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHCCCCEEEEc----cCC---CcHHHHHHHhhCCCeE-EecCChhHHHHHHHHHHHHhCCcEEEEEc---c
Q 040733 72 GADIIVEALERQGVTTVFAY----PGG---ASIEIHQSLTRSNIRS-ILPRHEQGGIFAAEGYARSSGTPGVCLVS---S 140 (643)
Q Consensus 72 ~a~~lv~~L~~~GV~~vFg~----PG~---~~~~l~~al~~~~i~~-i~~~hE~~A~~~A~Gyar~sg~~gv~~~t---~ 140 (643)
..++|.+.|++.-=-.+||- +|+ ....|.+.+-. =|+ =....|++...+|.|+|...-||-|++-- .
T Consensus 14 i~~Al~e~m~~d~~v~~~GeDv~~~Gg~f~~t~gL~~kfg~--~Rv~dtpIsE~~~~G~a~GlA~~G~rPive~~~~df~ 91 (191)
T d1ik6a1 14 INMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGP--ERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFI 91 (191)
T ss_dssp HHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCT--TTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC---
T ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCeeecchhHHHHhhh--heeeccccchhHHHHHHHHHHHhcCceEEEEEecchh
Confidence 34455566665533334432 332 22334444422 233 47789999999999999877777666432 1
Q ss_pred chhhHHHHHHHHHhh-----hCCCCEEEEeCCCcccccCCCCCCccCHHHHhhccceeeeE-eCCcCcHHHHHHHHHHHh
Q 040733 141 GPGVTNIMTGLMDAY-----SDSIPILAITGQVSQKLLGTDAFQEIPVVEVTRYMTKHNYL-VLDVDDIPRIIKEAFFIA 214 (643)
Q Consensus 141 GpG~~N~~~gl~~A~-----~~~vPvlvItg~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~i~~~l~~A~~~A 214 (643)
..++-.+.+-++.-. ....|+++.+..-+. .+.+.++..+..++++.+.-.... ..++.|+..+++.|++
T Consensus 92 ~~a~dQi~n~~ak~~~~s~g~~~~p~vir~~~G~~--~~gg~~Hs~~~~a~~~~iPgl~Vv~Ps~p~da~~ll~~al~-- 167 (191)
T d1ik6a1 92 WLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSG--TRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-- 167 (191)
T ss_dssp -CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------HHHHHHTCTTCEEECCCSHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccceeecccCC--CCCcccccCCHHHHHHHhhcccEEecCCHHHHHHHHHHHHh--
Confidence 245555555554432 246899988853222 123445555677899988765554 4677888888888876
Q ss_pred hcCCCCeEEEEcccchh
Q 040733 215 TSGRPGPVLIDIPVDVQ 231 (643)
Q Consensus 215 ~s~~~GPV~i~iP~Dv~ 231 (643)
.++||++--|+.+.
T Consensus 168 ---~~~Pv~~~e~k~ly 181 (191)
T d1ik6a1 168 ---GDDPVVFLEPKILY 181 (191)
T ss_dssp ---SSSCEEEEEEGGGS
T ss_pred ---CCCcEEEEEcHHHh
Confidence 24899998888764
|