Citrus Sinensis ID: 040813
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 401 | 2.2.26 [Sep-21-2011] | |||||||
| Q42962 | 401 | Phosphoglycerate kinase, | N/A | no | 1.0 | 1.0 | 0.912 | 0.0 | |
| Q42961 | 481 | Phosphoglycerate kinase, | N/A | no | 0.995 | 0.829 | 0.862 | 0.0 | |
| P12783 | 401 | Phosphoglycerate kinase, | N/A | no | 1.0 | 1.0 | 0.855 | 0.0 | |
| P29409 | 433 | Phosphoglycerate kinase, | N/A | no | 0.995 | 0.921 | 0.857 | 0.0 | |
| Q9LD57 | 481 | Phosphoglycerate kinase 1 | no | no | 0.995 | 0.829 | 0.847 | 0.0 | |
| P50318 | 478 | Phosphoglycerate kinase 2 | no | no | 0.995 | 0.834 | 0.839 | 0.0 | |
| P12782 | 480 | Phosphoglycerate kinase, | N/A | no | 0.992 | 0.829 | 0.841 | 0.0 | |
| Q9SBN4 | 462 | Phosphoglycerate kinase, | N/A | no | 0.995 | 0.863 | 0.733 | 1e-165 | |
| P41758 | 461 | Phosphoglycerate kinase, | N/A | no | 0.995 | 0.865 | 0.713 | 1e-161 | |
| Q0I6M5 | 402 | Phosphoglycerate kinase O | yes | no | 0.995 | 0.992 | 0.715 | 1e-160 |
| >sp|Q42962|PGKY_TOBAC Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1 | Back alignment and function desciption |
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Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/401 (91%), Positives = 388/401 (96%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVI 60
MA KKSV LKEADLKGKRVFVRVDLNVPLD+N NITDD R+RAAVPTIKYLM HG+ VI
Sbjct: 1 MAVKKSVGSLKEADLKGKRVFVRVDLNVPLDENFNITDDTRIRAAVPTIKYLMQHGSHVI 60
Query: 61 LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLEN 120
L+SHLGRPKGVTPKYSLKPLVPRLSELLGVEVK+AND IG EVEK+VAEIPEGGVLLLEN
Sbjct: 61 LASHLGRPKGVTPKYSLKPLVPRLSELLGVEVKIANDSIGPEVEKLVAEIPEGGVLLLEN 120
Query: 121 VRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKEL 180
VRF+KEEEKN+PEFAKKLASLADLYVNDAFG+AHRAHASTEGVAK+LKP+VAGFLMQKEL
Sbjct: 121 VRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVAGFLMQKEL 180
Query: 181 DYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGS 240
DYLVGAV+NP+KPFAAIVGGSKVS+KIGVIESLLEKVD+LLLGGGMIFTFYKAQG++VGS
Sbjct: 181 DYLVGAVANPQKPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGYAVGS 240
Query: 241 SLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDV 300
SLVEEDKLDLATSLMEKAK+KGVSLLLPTDVVIADKFAADANSKVVPA+ IPDGWMGLD+
Sbjct: 241 SLVEEDKLDLATSLMEKAKAKGVSLLLPTDVVIADKFAADANSKVVPASEIPDGWMGLDI 300
Query: 301 GPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDS 360
GPDAIKSF ALDTTKT+IWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDS
Sbjct: 301 GPDAIKSFGSALDTTKTVIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDS 360
Query: 361 VAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 401
VAAVEKVGLA+KMSHISTGGGASLELLEGK LPGVLALDDA
Sbjct: 361 VAAVEKVGLAEKMSHISTGGGASLELLEGKPLPGVLALDDA 401
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Nicotiana tabacum (taxid: 4097) EC: 2EC: .EC: 7EC: .EC: 2EC: .EC: 3 |
| >sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 | Back alignment and function description |
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| >sp|P12783|PGKY_WHEAT Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1 | Back alignment and function description |
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| >sp|P29409|PGKH_SPIOL Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LD57|PGKH1_ARATH Phosphoglycerate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=PGK1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P50318|PGKH2_ARATH Phosphoglycerate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=3 | Back alignment and function description |
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| >sp|P12782|PGKH_WHEAT Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SBN4|PGKH_VOLCA Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1 | Back alignment and function description |
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| >sp|P41758|PGKH_CHLRE Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1 | Back alignment and function description |
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| >sp|Q0I6M5|PGK_SYNS3 Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9311) GN=pgk PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 401 | ||||||
| 255544582 | 401 | phosphoglycerate kinase, putative [Ricin | 1.0 | 1.0 | 0.927 | 0.0 | |
| 211906450 | 401 | phosphoglycerate kinase [Gossypium hirsu | 1.0 | 1.0 | 0.912 | 0.0 | |
| 356525744 | 401 | PREDICTED: phosphoglycerate kinase, cyto | 1.0 | 1.0 | 0.905 | 0.0 | |
| 357451631 | 401 | Phosphoglycerate kinase [Medicago trunca | 1.0 | 1.0 | 0.907 | 0.0 | |
| 356557030 | 401 | PREDICTED: phosphoglycerate kinase, cyto | 1.0 | 1.0 | 0.905 | 0.0 | |
| 3738257 | 401 | cytosolic phosphoglycerate kinase 1 [Pop | 1.0 | 1.0 | 0.910 | 0.0 | |
| 449444148 | 401 | PREDICTED: phosphoglycerate kinase, cyto | 1.0 | 1.0 | 0.905 | 0.0 | |
| 118481158 | 401 | unknown [Populus trichocarpa] | 1.0 | 1.0 | 0.907 | 0.0 | |
| 29124969 | 401 | 3-phosphoglycerate kinase [Populus tremu | 1.0 | 1.0 | 0.907 | 0.0 | |
| 2499498 | 401 | RecName: Full=Phosphoglycerate kinase, c | 1.0 | 1.0 | 0.912 | 0.0 |
| >gi|255544582|ref|XP_002513352.1| phosphoglycerate kinase, putative [Ricinus communis] gi|223547260|gb|EEF48755.1| phosphoglycerate kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/401 (92%), Positives = 390/401 (97%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVI 60
MA KKSVS LKEADLKGKRVFVRVDLNVPLDDNLNITDD R+RAAVPTIKYLM HGA+VI
Sbjct: 1 MATKKSVSSLKEADLKGKRVFVRVDLNVPLDDNLNITDDTRIRAAVPTIKYLMDHGARVI 60
Query: 61 LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLEN 120
L +HLGRPKGVTPKYSLKPLVPRLSELLGVEVKMA+DCIGEEVEK+VAEIPEGGVLLLEN
Sbjct: 61 LCTHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMASDCIGEEVEKLVAEIPEGGVLLLEN 120
Query: 121 VRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKEL 180
VRFHKEEEKN+PEFAKKLA LAD+YVNDAFG+AHRAHASTEGVAK+LKPSVAGFLMQKEL
Sbjct: 121 VRFHKEEEKNEPEFAKKLAGLADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKEL 180
Query: 181 DYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGS 240
DYLVGAV+NPKKPFAAIVGGSKVSTKIGVIESLLEKVDIL+LGGGMIFTFYKAQGHSVGS
Sbjct: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILILGGGMIFTFYKAQGHSVGS 240
Query: 241 SLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDV 300
SLVE DKLDLA+SL+EKAK+KGV LLLPTDVVIADKFAADANSKVVPA++IPDGWMGLDV
Sbjct: 241 SLVEGDKLDLASSLIEKAKAKGVDLLLPTDVVIADKFAADANSKVVPASSIPDGWMGLDV 300
Query: 301 GPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDS 360
GPDAIK+F EALDTT+TIIWNGPMGVFEFDKFA GTEAIAKKLAELSGKGVTTIIGGGDS
Sbjct: 301 GPDAIKTFCEALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLAELSGKGVTTIIGGGDS 360
Query: 361 VAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 401
VAAVEKVGLADKMSHISTGGGASLELLEGK LPGVLALDDA
Sbjct: 361 VAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDDA 401
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906450|gb|ACJ11718.1| phosphoglycerate kinase [Gossypium hirsutum] | Back alignment and taxonomy information |
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| >gi|356525744|ref|XP_003531483.1| PREDICTED: phosphoglycerate kinase, cytosolic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357451631|ref|XP_003596092.1| Phosphoglycerate kinase [Medicago truncatula] gi|355485140|gb|AES66343.1| Phosphoglycerate kinase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356557030|ref|XP_003546821.1| PREDICTED: phosphoglycerate kinase, cytosolic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|3738257|dbj|BAA33801.1| cytosolic phosphoglycerate kinase 1 [Populus nigra] | Back alignment and taxonomy information |
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| >gi|449444148|ref|XP_004139837.1| PREDICTED: phosphoglycerate kinase, cytosolic-like [Cucumis sativus] gi|449493000|ref|XP_004159164.1| PREDICTED: phosphoglycerate kinase, cytosolic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|118481158|gb|ABK92531.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|29124969|gb|AAO63774.1| 3-phosphoglycerate kinase [Populus tremuloides] | Back alignment and taxonomy information |
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| >gi|2499498|sp|Q42962.1|PGKY_TOBAC RecName: Full=Phosphoglycerate kinase, cytosolic gi|1161602|emb|CAA88840.1| phosphoglycerate kinase (PGK) [Nicotiana tabacum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 401 | ||||||
| TAIR|locus:2206410 | 401 | PGK "phosphoglycerate kinase" | 1.0 | 1.0 | 0.902 | 4.3e-189 | |
| TAIR|locus:2087750 | 481 | PGK1 "phosphoglycerate kinase | 0.995 | 0.829 | 0.847 | 1.5e-177 | |
| TAIR|locus:2205215 | 478 | AT1G56190 [Arabidopsis thalian | 0.995 | 0.834 | 0.839 | 1.9e-177 | |
| TIGR_CMR|CHY_0281 | 394 | CHY_0281 "phosphoglycerate kin | 0.972 | 0.989 | 0.613 | 9.9e-126 | |
| TIGR_CMR|BA_5367 | 394 | BA_5367 "phosphoglycerate kina | 0.972 | 0.989 | 0.557 | 1.3e-116 | |
| TIGR_CMR|CJE_1589 | 400 | CJE_1589 "phosphoglycerate kin | 0.962 | 0.965 | 0.519 | 2.5e-106 | |
| SGD|S000000605 | 416 | PGK1 "3-phosphoglycerate kinas | 0.987 | 0.951 | 0.507 | 4.2e-102 | |
| TIGR_CMR|DET_0744 | 397 | DET_0744 "phosphoglycerate kin | 0.957 | 0.967 | 0.515 | 4.4e-100 | |
| POMBASE|SPBC14F5.04c | 414 | pgk1 "phosphoglycerate kinase | 0.955 | 0.925 | 0.523 | 2.8e-98 | |
| UNIPROTKB|P41759 | 416 | PGK "Phosphoglycerate kinase" | 0.970 | 0.935 | 0.491 | 3.8e-94 |
| TAIR|locus:2206410 PGK "phosphoglycerate kinase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1833 (650.3 bits), Expect = 4.3e-189, P = 4.3e-189
Identities = 362/401 (90%), Positives = 384/401 (95%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVI 60
MA K+SV LKEADLKGK VFVRVDLNVPLDDN NITDD R+RAAVPTIKYLMG+G++V+
Sbjct: 1 MATKRSVGTLKEADLKGKSVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGNGSRVV 60
Query: 61 LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLEN 120
L SHLGRPKGVTPKYSLKPLVPRLSELLGVEV MAND IGEEV+K+VA +PEGGVLLLEN
Sbjct: 61 LCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDSIGEEVQKLVAGLPEGGVLLLEN 120
Query: 121 VRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKEL 180
VRF+ EEEKNDPEFAKKLA+LAD+YVNDAFG+AHRAHASTEGVAKFLKPSVAGFLMQKEL
Sbjct: 121 VRFYAEEEKNDPEFAKKLAALADVYVNDAFGTAHRAHASTEGVAKFLKPSVAGFLMQKEL 180
Query: 181 DYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGS 240
DYLVGAV+NPKKPFAAIVGGSKVSTKIGVIESLL VDILLLGGGMIFTFYKAQG SVGS
Sbjct: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLNTVDILLLGGGMIFTFYKAQGLSVGS 240
Query: 241 SLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDV 300
SLVEEDKLDLA SLMEKAK+KGVSLLLPTDVVIADKFA DANSK+VPATAIPDGWMGLD+
Sbjct: 241 SLVEEDKLDLAKSLMEKAKAKGVSLLLPTDVVIADKFAPDANSKIVPATAIPDGWMGLDI 300
Query: 301 GPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDS 360
GPD+IK+FSEALDTTKTIIWNGPMGVFEFDKFAAGTEA+AK+LAELSGKGVTTIIGGGDS
Sbjct: 301 GPDSIKTFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAVAKQLAELSGKGVTTIIGGGDS 360
Query: 361 VAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 401
VAAVEKVGLADKMSHISTGGGASLELLEGK LPGVLALD+A
Sbjct: 361 VAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDEA 401
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| TAIR|locus:2087750 PGK1 "phosphoglycerate kinase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2205215 AT1G56190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CHY_0281 CHY_0281 "phosphoglycerate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_5367 BA_5367 "phosphoglycerate kinase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CJE_1589 CJE_1589 "phosphoglycerate kinase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
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| SGD|S000000605 PGK1 "3-phosphoglycerate kinase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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| TIGR_CMR|DET_0744 DET_0744 "phosphoglycerate kinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
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| POMBASE|SPBC14F5.04c pgk1 "phosphoglycerate kinase Pgk1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P41759 PGK "Phosphoglycerate kinase" [Schistosoma mansoni (taxid:6183)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B0JT86 | PGK_MICAN | 2, ., 7, ., 2, ., 3 | 0.685 | 0.9925 | 0.9900 | yes | no |
| A8G2K1 | PGK_PROM2 | 2, ., 7, ., 2, ., 3 | 0.6758 | 0.9950 | 0.9925 | yes | no |
| Q67SW6 | PGK_SYMTH | 2, ., 7, ., 2, ., 3 | 0.6179 | 0.9526 | 0.9744 | yes | no |
| P12782 | PGKH_WHEAT | 2, ., 7, ., 2, ., 3 | 0.8417 | 0.9925 | 0.8291 | N/A | no |
| P12783 | PGKY_WHEAT | 2, ., 7, ., 2, ., 3 | 0.8553 | 1.0 | 1.0 | N/A | no |
| B2ITU1 | PGK_NOSP7 | 2, ., 7, ., 2, ., 3 | 0.7242 | 0.9675 | 0.97 | yes | no |
| Q7U3V0 | PGK_SYNPX | 2, ., 7, ., 2, ., 3 | 0.705 | 0.9950 | 0.9925 | yes | no |
| B8HXQ5 | PGK_CYAP4 | 2, ., 7, ., 2, ., 3 | 0.7135 | 0.9950 | 0.9827 | yes | no |
| Q9SBN4 | PGKH_VOLCA | 2, ., 7, ., 2, ., 3 | 0.7331 | 0.9950 | 0.8636 | N/A | no |
| Q3AFD1 | PGK_CARHZ | 2, ., 7, ., 2, ., 3 | 0.6147 | 0.9650 | 0.9822 | yes | no |
| C0Z6L6 | PGK_BREBN | 2, ., 7, ., 2, ., 3 | 0.6055 | 0.9700 | 0.9873 | yes | no |
| Q9LD57 | PGKH1_ARATH | 2, ., 7, ., 2, ., 3 | 0.8471 | 0.9950 | 0.8295 | no | no |
| Q8YPR1 | PGK_NOSS1 | 2, ., 7, ., 2, ., 3 | 0.7218 | 0.9950 | 0.9975 | yes | no |
| A2BUH2 | PGK_PROM5 | 2, ., 7, ., 2, ., 3 | 0.655 | 0.9925 | 0.9900 | yes | no |
| Q65EM9 | PGK_BACLD | 2, ., 7, ., 2, ., 3 | 0.5954 | 0.9725 | 0.9898 | yes | no |
| Q5N4Z6 | PGK_SYNP6 | 2, ., 7, ., 2, ., 3 | 0.6907 | 0.9925 | 0.9900 | yes | no |
| Q8KAE1 | PGK_CHLTE | 2, ., 7, ., 2, ., 3 | 0.5867 | 0.9750 | 0.9848 | yes | no |
| A2CDG7 | PGK_PROM3 | 2, ., 7, ., 2, ., 3 | 0.6925 | 0.9950 | 0.9950 | yes | no |
| Q10Z46 | PGK_TRIEI | 2, ., 7, ., 2, ., 3 | 0.6733 | 0.9825 | 0.9899 | yes | no |
| A2C025 | PGK_PROM1 | 2, ., 7, ., 2, ., 3 | 0.665 | 0.9950 | 0.9950 | yes | no |
| Q8R965 | PGK_THETN | 2, ., 7, ., 2, ., 3 | 0.6173 | 0.9650 | 0.9822 | yes | no |
| A5GW73 | PGK_SYNR3 | 2, ., 7, ., 2, ., 3 | 0.7 | 0.9950 | 0.9925 | yes | no |
| Q2JKX6 | PGK_SYNJB | 2, ., 7, ., 2, ., 3 | 0.6658 | 0.9675 | 0.9417 | yes | no |
| B7K9Q5 | PGK_CYAP7 | 2, ., 7, ., 2, ., 3 | 0.6942 | 0.9925 | 0.9925 | yes | no |
| Q8DGP7 | PGK_THEEB | 2, ., 7, ., 2, ., 3 | 0.6917 | 0.9950 | 0.9975 | yes | no |
| Q3AGU1 | PGK_SYNSC | 2, ., 7, ., 2, ., 3 | 0.695 | 0.9950 | 0.9950 | yes | no |
| Q0I6M5 | PGK_SYNS3 | 2, ., 7, ., 2, ., 3 | 0.715 | 0.9950 | 0.9925 | yes | no |
| Q46HH8 | PGK_PROMT | 2, ., 7, ., 2, ., 3 | 0.6625 | 0.9950 | 0.9950 | yes | no |
| Q42961 | PGKH_TOBAC | 2, ., 7, ., 2, ., 3 | 0.8621 | 0.9950 | 0.8295 | N/A | no |
| Q42962 | PGKY_TOBAC | 2, ., 7, ., 2, ., 3 | 0.9127 | 1.0 | 1.0 | N/A | no |
| B7JVE4 | PGK_CYAP8 | 2, ., 7, ., 2, ., 3 | 0.6859 | 0.9875 | 0.99 | yes | no |
| Q3AVX6 | PGK_SYNS9 | 2, ., 7, ., 2, ., 3 | 0.705 | 0.9950 | 0.9950 | yes | no |
| A3PAR3 | PGK_PROM0 | 2, ., 7, ., 2, ., 3 | 0.6658 | 0.9950 | 0.9925 | yes | no |
| A5GPB2 | PGK_SYNPW | 2, ., 7, ., 2, ., 3 | 0.7 | 0.9950 | 0.9925 | yes | no |
| Q31CY6 | PGK_PROM9 | 2, ., 7, ., 2, ., 3 | 0.6783 | 0.9950 | 0.9925 | yes | no |
| Q31P73 | PGK_SYNE7 | 2, ., 7, ., 2, ., 3 | 0.6957 | 0.9925 | 0.9900 | yes | no |
| P74421 | PGK_SYNY3 | 2, ., 7, ., 2, ., 3 | 0.6982 | 0.9950 | 0.9950 | N/A | no |
| B0CD95 | PGK_ACAM1 | 2, ., 7, ., 2, ., 3 | 0.68 | 0.9950 | 0.9950 | yes | no |
| B1XNQ1 | PGK_SYNP2 | 2, ., 7, ., 2, ., 3 | 0.6925 | 0.9875 | 0.9949 | yes | no |
| Q2JXF0 | PGK_SYNJA | 2, ., 7, ., 2, ., 3 | 0.6758 | 0.9675 | 0.9417 | yes | no |
| Q7V390 | PGK_PROMP | 2, ., 7, ., 2, ., 3 | 0.6633 | 0.9950 | 0.9925 | yes | no |
| P41758 | PGKH_CHLRE | 2, ., 7, ., 2, ., 3 | 0.7132 | 0.9950 | 0.8655 | N/A | no |
| Q7VDZ4 | PGK_PROMA | 2, ., 7, ., 2, ., 3 | 0.6766 | 0.9925 | 0.9900 | yes | no |
| A9BDF8 | PGK_PROM4 | 2, ., 7, ., 2, ., 3 | 0.6716 | 0.9925 | 0.9900 | yes | no |
| A8FHJ3 | PGK_BACP2 | 2, ., 7, ., 2, ., 3 | 0.6055 | 0.9725 | 0.9898 | yes | no |
| P50318 | PGKH2_ARATH | 2, ., 7, ., 2, ., 3 | 0.8395 | 0.9950 | 0.8347 | no | no |
| A2BNZ0 | PGK_PROMS | 2, ., 7, ., 2, ., 3 | 0.6783 | 0.9950 | 0.9925 | yes | no |
| Q3MF40 | PGK_ANAVT | 2, ., 7, ., 2, ., 3 | 0.7243 | 0.9950 | 0.9975 | yes | no |
| P29409 | PGKH_SPIOL | 2, ., 7, ., 2, ., 3 | 0.8571 | 0.9950 | 0.9214 | N/A | no |
| Q7V461 | PGK_PROMM | 2, ., 7, ., 2, ., 3 | 0.6925 | 0.9950 | 0.9950 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.2.3 | 0.993 |
| 3rd Layer | 5.3.1.1 | 0.824 |
| 3rd Layer | 5.3.1 | 0.766 |
| 3rd Layer | 2.7.2 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 401 | |||
| PLN02282 | 401 | PLN02282, PLN02282, phosphoglycerate kinase | 0.0 | |
| PLN03034 | 481 | PLN03034, PLN03034, phosphoglycerate kinase; Provi | 0.0 | |
| PRK00073 | 389 | PRK00073, pgk, phosphoglycerate kinase; Provisiona | 0.0 | |
| pfam00162 | 383 | pfam00162, PGK, Phosphoglycerate kinase | 0.0 | |
| cd00318 | 397 | cd00318, Phosphoglycerate_kinase, Phosphoglycerate | 0.0 | |
| COG0126 | 395 | COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydr | 0.0 | |
| PRK13962 | 645 | PRK13962, PRK13962, bifunctional phosphoglycerate | 0.0 | |
| PTZ00005 | 417 | PTZ00005, PTZ00005, phosphoglycerate kinase; Provi | 1e-170 |
| >gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase | Back alignment and domain information |
|---|
Score = 741 bits (1915), Expect = 0.0
Identities = 374/401 (93%), Positives = 392/401 (97%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVI 60
MA K+SV LKEADLKGKRVFVRVDLNVPLDDN NITDD R+RAAVPTIKYLMGHGA+VI
Sbjct: 1 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVI 60
Query: 61 LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLEN 120
L SHLGRPKGVTPKYSLKPLVPRLSELLGVEV MANDCIGEEVEK+VAE+PEGGVLLLEN
Sbjct: 61 LCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLEN 120
Query: 121 VRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKEL 180
VRF+KEEEKNDPEFAKKLASLAD+YVNDAFG+AHRAHASTEGVAK+LKPSVAGFLMQKEL
Sbjct: 121 VRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKEL 180
Query: 181 DYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGS 240
DYLVGAV+NPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQG+SVGS
Sbjct: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGS 240
Query: 241 SLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDV 300
SLVEEDKLDLATSL+EKAK+KGVSLLLPTDVVIADKFA DANSKVVPA+AIPDGWMGLD+
Sbjct: 241 SLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLDI 300
Query: 301 GPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDS 360
GPD+IK+FSEALDTTKTIIWNGPMGVFEF+KFAAGTEAIAKKLAELSGKGVTTIIGGGDS
Sbjct: 301 GPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDS 360
Query: 361 VAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 401
VAAVEKVGLADKMSHISTGGGASLELLEGK LPGVLALDDA
Sbjct: 361 VAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDDA 401
|
Length = 401 |
| >gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase | Back alignment and domain information |
|---|
| >gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate | Back alignment and domain information |
|---|
| >gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 401 | |||
| PLN02282 | 401 | phosphoglycerate kinase | 100.0 | |
| PLN03034 | 481 | phosphoglycerate kinase; Provisional | 100.0 | |
| COG0126 | 395 | Pgk 3-phosphoglycerate kinase [Carbohydrate transp | 100.0 | |
| cd00318 | 397 | Phosphoglycerate_kinase Phosphoglycerate kinase (P | 100.0 | |
| PRK00073 | 389 | pgk phosphoglycerate kinase; Provisional | 100.0 | |
| PTZ00005 | 417 | phosphoglycerate kinase; Provisional | 100.0 | |
| PRK13962 | 645 | bifunctional phosphoglycerate kinase/triosephospha | 100.0 | |
| KOG1367 | 416 | consensus 3-phosphoglycerate kinase [Carbohydrate | 100.0 | |
| PF00162 | 384 | PGK: Phosphoglycerate kinase; InterPro: IPR001576 | 100.0 | |
| TIGR01663 | 526 | PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | 83.13 |
| >PLN02282 phosphoglycerate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-150 Score=1140.27 Aligned_cols=401 Identities=93% Similarity=1.344 Sum_probs=390.8
Q ss_pred CCCCCcccccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhH
Q 040813 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPL 80 (401)
Q Consensus 1 ~~~~~~i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~v 80 (401)
|..|+++.+|+|+|++|||||||||||||++++|+|+||+||++++|||+||+++||||||+||||||++.++++||+||
T Consensus 1 ~~~~~~~~ti~d~d~~gK~VlvRvD~NvPi~~~g~I~dd~RI~a~lpTI~~l~~~gakvVl~SHlGRP~g~~~~~SL~~v 80 (401)
T PLN02282 1 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVILCSHLGRPKGVTPKYSLKPL 80 (401)
T ss_pred CCcccccCChhHhhccCCEEEEEeecCCccCCCCcccCcHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCcccCHHHH
Confidence 56788999999999999999999999999975589999999999999999999999999999999999887678999999
Q ss_pred HHHHHhhhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccch
Q 040813 81 VPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHAST 160 (401)
Q Consensus 81 a~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~ 160 (401)
|++|+++|+++|.|++||+|++++++|++|++|||+||||+|||+||++|+++|+++||+|||+|||||||+|||+|||+
T Consensus 81 a~~Ls~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~RF~~~E~~~~~~~a~~LA~l~DvyVNDAFg~aHR~haS~ 160 (401)
T PLN02282 81 VPRLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHAST 160 (401)
T ss_pred HHHHHHHHCCCeEECCCCCCHHHHHHHhcCCCCCEEEEeccccCcccccCHHHHHHHHHHhCcEeeechhhhhhhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCC
Q 040813 161 EGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGS 240 (401)
Q Consensus 161 vgi~~~l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~ 240 (401)
+|||+|++|+|||+|||||+++|++++++|+||+++|+|||||||||++|+||+++||+|++||+||||||+|+|++||+
T Consensus 161 ~gi~~~l~~~~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~ 240 (401)
T PLN02282 161 EGVAKYLKPSVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGS 240 (401)
T ss_pred hhhhhhcCccccchHHHHHHHHHHHHhcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHHHHHHHcCCCcCh
Confidence 99999987799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEE
Q 040813 241 SLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIW 320 (401)
Q Consensus 241 sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~w 320 (401)
|++|++.++.|++|+++++++|++|+||+||+|+++|+.+++++++++++||+|||++||||+|++.|+++|++|+||||
T Consensus 241 sl~e~d~i~~a~~il~~a~~~g~~I~lPvD~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~w 320 (401)
T PLN02282 241 SLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSEALDTTKTIIW 320 (401)
T ss_pred hhcChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCCCCCeEEeehhcCCCCCeeeccCHHHHHHHHHHHhhCCEEEE
Confidence 99999999999999999999999999999999999998888888888899999999999999999999999999999999
Q ss_pred eCcccccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 040813 321 NGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 321 NGP~GvfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
|||||+||+++|++||+++++++++.++++++||+|||||++|++++|+.++||||||||||+|+||||++||||+||++
T Consensus 321 NGP~GvfE~~~F~~GT~~l~~aia~~t~~~a~sivGGGdt~aA~~~~g~~~~~shvSTGGGA~Le~LeGk~LPgi~aL~~ 400 (401)
T PLN02282 321 NGPMGVFEFEKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDD 400 (401)
T ss_pred ECCcCCccCcchhHHHHHHHHHHHHhhcCCCEEEEeCcHHHHHHHHcCCcCCceEEeCchHHHHHHHcCCCcchHHHhhc
Confidence 99999999999999999999999997767899999999999999999999999999999999999999999999999986
Q ss_pred C
Q 040813 401 A 401 (401)
Q Consensus 401 ~ 401 (401)
+
T Consensus 401 ~ 401 (401)
T PLN02282 401 A 401 (401)
T ss_pred C
Confidence 4
|
|
| >PLN03034 phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
| >COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate | Back alignment and domain information |
|---|
| >PRK00073 pgk phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
| >PTZ00005 phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
| >PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
| >KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2 | Back alignment and domain information |
|---|
| >TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 401 | ||||
| 1php_A | 394 | Structure Of The Adp Complex Of The 3-Phosphoglycer | 1e-132 | ||
| 1vpe_A | 398 | Crystallographic Analysis Of Phosphoglycerate Kinas | 1e-131 | ||
| 3uwd_A | 394 | Crystal Structure Of Phosphoglycerate Kinase From B | 1e-116 | ||
| 3q3v_A | 403 | Crystal Structure Of Phosphoglycerate Kinase From C | 1e-108 | ||
| 1qpg_A | 415 | 3-Phosphoglycerate Kinase, Mutation R65q Length = 4 | 1e-108 | ||
| 1v6s_A | 390 | Crystal Structure Of Phosphoglycerate Kinase From T | 1e-106 | ||
| 2ie8_A | 390 | Crystal Structure Of Thermus Caldophilus Phosphogly | 1e-106 | ||
| 1vjc_A | 416 | Structure Of Pig Muscle Pgk Complexed With Mgatp Le | 1e-106 | ||
| 2zgv_A | 420 | Crystal Structure Of Human Phosphoglycerate Kinase | 1e-105 | ||
| 2y3i_A | 416 | The Structure Of The Fully Closed Conformation Of H | 1e-105 | ||
| 2xe6_A | 417 | The Complete Reaction Cycle Of Human Phosphoglycera | 1e-105 | ||
| 2wzb_A | 416 | The Catalytically Active Fully Closed Conformation | 1e-105 | ||
| 3pgk_A | 416 | The Structure Of Yeast Phosphoglycerate Kinase At 0 | 1e-105 | ||
| 2p9q_A | 416 | Crystal Structure Of Phosphoglycerate Kinase-2 Leng | 1e-105 | ||
| 2x14_A | 416 | The Catalytically Active Fully Closed Conformation | 1e-104 | ||
| 2wzd_A | 417 | The Catalytically Active Fully Closed Conformation | 1e-104 | ||
| 3oz7_A | 417 | Crystal Structure Of 3-Phosphopglycerate Kinase Of | 1e-104 | ||
| 1kf0_A | 416 | Crystal Structure Of Pig Muscle Phosphoglycerate Ki | 1e-104 | ||
| 4dg5_A | 403 | Crystal Structure Of Staphylococcal Phosphoglycerat | 1e-102 | ||
| 13pk_A | 415 | Ternary Complex Of Phosphoglycerate Kinase From Try | 1e-101 | ||
| 3oza_A | 424 | Crystal Structure Of Plasmodium Falciparum 3-Phosph | 1e-101 | ||
| 1ltk_A | 425 | Crystal Structure Of Phosphoglycerate Kinase From P | 1e-101 | ||
| 1hdi_A | 413 | Pig Muscle 3-Phosphoglycerate Kinase Complexed With | 1e-98 | ||
| 4fey_A | 395 | An X-Ray Structure Of A Putative Phosphogylcerate K | 8e-94 | ||
| 4ehj_A | 392 | An X-Ray Structure Of A Putative Phosphogylcerate K | 1e-92 | ||
| 1fw8_A | 416 | Circularly Permuted Phosphoglycerate Kinase From Ye | 1e-89 | ||
| 1zmr_A | 387 | Crystal Structure Of The E. Coli Phosphoglycerate K | 4e-85 | ||
| 2cun_A | 410 | Crystal Structure Of Phosphoglycerate Kinase From P | 6e-56 |
| >pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus At 1.65 Angstroms Length = 394 | Back alignment and structure |
|
| >pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From The Hyperthermophilic Bacterium Thermotoga Maritima Length = 398 | Back alignment and structure |
| >pdb|3UWD|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Bacillus Anthracis Length = 394 | Back alignment and structure |
| >pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Campylobacter Jejuni. Length = 403 | Back alignment and structure |
| >pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q Length = 415 | Back alignment and structure |
| >pdb|1V6S|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Thermus Thermophilus Hb8 Length = 390 | Back alignment and structure |
| >pdb|2IE8|A Chain A, Crystal Structure Of Thermus Caldophilus Phosphoglycerate Kinase In The Open Conformation Length = 390 | Back alignment and structure |
| >pdb|1VJC|A Chain A, Structure Of Pig Muscle Pgk Complexed With Mgatp Length = 416 | Back alignment and structure |
| >pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound To D-Adp Length = 420 | Back alignment and structure |
| >pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium Tetrafluoride Length = 416 | Back alignment and structure |
| >pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate Kinase: The Open Binary Complex With 3pg Length = 417 | Back alignment and structure |
| >pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase In Complex With Adp, 3pg And Magnesium Trifluoride Length = 416 | Back alignment and structure |
| >pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm Resolution Length = 416 | Back alignment and structure |
| >pdb|2P9Q|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Length = 416 | Back alignment and structure |
| >pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Amp-Pcp And 3pg Length = 416 | Back alignment and structure |
| >pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Adp, 3pg And Aluminium Trifluoride Length = 417 | Back alignment and structure |
| >pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of Plasmodium Falciparum Length = 417 | Back alignment and structure |
| >pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase Ternary Complex With Amp-Pcp And 3pg Length = 416 | Back alignment and structure |
| >pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate Kinase Length = 403 | Back alignment and structure |
| >pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From Trypanosoma Brucei Length = 415 | Back alignment and structure |
| >pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum 3-Phosphoglycerate Kinase Length = 424 | Back alignment and structure |
| >pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Plasmodium Falciparum, In The Open Conformation Length = 425 | Back alignment and structure |
| >pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg And Mgadp Length = 413 | Back alignment and structure |
| >pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase With Bound Adp From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 395 | Back alignment and structure |
| >pdb|4EHJ|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 392 | Back alignment and structure |
| >pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast: Pgk P72 Length = 416 | Back alignment and structure |
| >pdb|1ZMR|A Chain A, Crystal Structure Of The E. Coli Phosphoglycerate Kinase Length = 387 | Back alignment and structure |
| >pdb|2CUN|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Pyrococcus Horikoshii Ot3 Length = 410 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} Length = 403 | Back alignment and structure |
|---|
Score = 720 bits (1862), Expect = 0.0
Identities = 204/402 (50%), Positives = 277/402 (68%), Gaps = 8/402 (1%)
Query: 1 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVI 60
M+ S+ K+ DL K+VF+R D NVP DD LNITDD R+R+A+PTI+Y + +G VI
Sbjct: 4 MSDIISI---KDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVI 60
Query: 61 LSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLEN 120
L+SHLGRPK ++ KYSL+P+ RL+ LL E+ MA D IGE+ + + G +LLLEN
Sbjct: 61 LASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLEN 120
Query: 121 VRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMQK 178
+RF K E KND AK+LAS+ +Y+NDAFG HRAH+S E + KF K AGFL+QK
Sbjct: 121 LRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQK 180
Query: 179 ELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSV 238
E+D+ + +P +PF A+VGGSKVS K+ + +LL KVD L++GGGM FTF KA G+ +
Sbjct: 181 EIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDI 240
Query: 239 GSSLVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGL 298
G+SL+EE+ L+ A ++ K K+ GV + LP DVV A + D K VPA IP+GWMGL
Sbjct: 241 GNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGL 300
Query: 299 DVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGG 358
D+GP +++ F E + +TI WNGPMGVFE DKF+ G+ ++ ++E T+++GGG
Sbjct: 301 DIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISE---GHATSVVGGG 357
Query: 359 DSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
D+ V + G AD+M+ ISTGGGASLEL+EGK LPGV AL
Sbjct: 358 DTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRS 399
|
| >1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 Length = 398 | Back alignment and structure |
|---|
| >1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A* Length = 394 | Back alignment and structure |
|---|
| >1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A Length = 390 | Back alignment and structure |
|---|
| >16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* Length = 415 | Back alignment and structure |
|---|
| >3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} PDB: 1ltk_A* 3oza_A Length = 417 | Back alignment and structure |
|---|
| >4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A Length = 395 | Back alignment and structure |
|---|
| >1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Length = 415 | Back alignment and structure |
|---|
| >2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ... Length = 416 | Back alignment and structure |
|---|
| >1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} Length = 387 | Back alignment and structure |
|---|
| >2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii} Length = 410 | Back alignment and structure |
|---|
| >1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Length = 416 | Back alignment and structure |
|---|
| >1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Length = 416 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 401 | |||
| 1vpe_A | 398 | Phosphoglycerate kinase; transferase, hyperthermos | 100.0 | |
| 1php_A | 394 | 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac | 100.0 | |
| 3q3v_A | 403 | Phosphoglycerate kinase; structural genomics, cent | 100.0 | |
| 1v6s_A | 390 | Phosphoglycerate kinase; riken structu genomics/pr | 100.0 | |
| 16pk_A | 415 | PGK, 3-phosphoglycerate kinase; ternary complex, g | 100.0 | |
| 1qpg_A | 415 | PGK, 3-phosphoglycerate kinase; phosphotransferase | 100.0 | |
| 4fey_A | 395 | Phosphoglycerate kinase; structural genomics, niai | 100.0 | |
| 3oz7_A | 417 | Phosphoglycerate kinase; transferase, ATP binding, | 100.0 | |
| 2wzb_A | 416 | Phosphoglycerate kinase 1; hereditary hemolytic an | 100.0 | |
| 1zmr_A | 387 | Phosphoglycerate kinase; transferase, glycolysis; | 100.0 | |
| 2cun_A | 410 | Phosphoglycerate kinase; structural genomics, tanp | 100.0 | |
| 1fw8_A | 416 | PGK P72, phosphoglycerate kinase; phosphotransfera | 100.0 | |
| 1fw8_A | 416 | PGK P72, phosphoglycerate kinase; phosphotransfera | 99.84 | |
| 3tqq_A | 314 | Methionyl-tRNA formyltransferase; protein synthesi | 83.36 | |
| 3rfo_A | 317 | Methionyl-tRNA formyltransferase; structural genom | 80.18 |
| >1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-154 Score=1162.86 Aligned_cols=391 Identities=60% Similarity=0.985 Sum_probs=381.4
Q ss_pred cccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCC-CCCCCChhhHHHHHHh
Q 040813 8 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSE 86 (401)
Q Consensus 8 ~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g-~~~~~SL~~va~~L~~ 86 (401)
++|+|+|++|||||||||||||+++ |+|+||+||++++|||+||+++|||||||||||||+| +++++||+|||++|++
T Consensus 3 ~ti~d~dl~gKrVlvRvD~NVPl~~-g~Itdd~RI~a~lpTI~~ll~~gakvil~SHlGRPkg~~~~~~SL~pva~~L~~ 81 (398)
T 1vpe_A 3 MTIRDVDLKGKRVIMRVDFNVPVKD-GVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSE 81 (398)
T ss_dssp CBGGGSCCTTCEEEEECCCCCCEET-TEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHH
T ss_pred CcccccCcCCCEEEEEecCCCcccC-CccCChHHHHHHHHHHHHHHHCCCEEEEEccCCCCCCCcCCccCHHHHHHHHHH
Confidence 4566679999999999999999985 8999999999999999999999999999999999998 6789999999999999
Q ss_pred hhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhhcc
Q 040813 87 LLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKF 166 (401)
Q Consensus 87 ~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~ 166 (401)
+||++|+|++||+|+++++++++|++|||+||||+|||+||++|+++|+++||+|||+|||||||||||+||||+||++|
T Consensus 82 lLg~~V~f~~d~~G~~~~~~v~~l~~G~VlLLEN~RF~~~E~~nd~~fa~~LA~l~DvyVNDAFgtaHRahaS~~gi~~~ 161 (398)
T 1vpe_A 82 LLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQF 161 (398)
T ss_dssp HHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGGT
T ss_pred HHCCCceeCCCCCCHHHHHHHhcCCCCeEEEEcccCCCcchhcCCHHHHHHHHhhCCEEEeccccccccccCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccC
Q 040813 167 LKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEED 246 (401)
Q Consensus 167 l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~ 246 (401)
+ |+|||+||||||++|++++++|+|||++|+|||||||||++|+||++|||+|||||+||||||+|||++||+|++|++
T Consensus 162 l-ps~aG~LmekEl~~l~k~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d 240 (398)
T 1vpe_A 162 I-PSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEED 240 (398)
T ss_dssp S-CEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGG
T ss_pred h-hhhccHHHHHHHHHHHHHhcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCCCchhcChh
Confidence 8 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEe-CCCCCCCCcccccChHHHHHHHHHhccCCeEEEeCccc
Q 040813 247 KLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVP-ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMG 325 (401)
Q Consensus 247 ~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~-~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~G 325 (401)
.++.|++||++|+++|++|+||+|++|+++|++++++++++ .++||+|||++||||+|++.|+++|++|||||||||||
T Consensus 241 ~~~~a~~ll~ka~~~g~~i~lPvD~vva~~f~~~a~~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTivWNGPmG 320 (398)
T 1vpe_A 241 KIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMG 320 (398)
T ss_dssp GHHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSS
T ss_pred hHHHHHHHHHHHHhcCCEEECCceeehhhcccCCCCeEEecccccCCCCCEeeecCHHHHHHHHHHHhhCCEEEEECCcc
Confidence 99999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhcccc
Q 040813 326 VFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400 (401)
Q Consensus 326 vfE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~~ 400 (401)
|||+++|+.||++++++++++++.++|||||||||++|++++|+.|+||||||||||||||||||+||||++|++
T Consensus 321 vFE~~~Fa~GT~~va~aia~~t~~~~~sivGGGDt~aav~~~g~~d~~shiSTGGGA~Le~LeGk~LPgv~aL~~ 395 (398)
T 1vpe_A 321 VFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRI 395 (398)
T ss_dssp CTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCB
T ss_pred cccCchHHHHHHHHHHHHHhhccCCCEEEECCcHHHHHHHHcCCcCCccEEeCChHHHHHHHcCCCCcHHHHHHh
Confidence 999999999999999999998654579999999999999999999999999999999999999999999999975
|
| >1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A* | Back alignment and structure |
|---|
| >3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0 | Back alignment and structure |
|---|
| >1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A | Back alignment and structure |
|---|
| >16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* | Back alignment and structure |
|---|
| >1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* | Back alignment and structure |
|---|
| >4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A | Back alignment and structure |
|---|
| >3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A | Back alignment and structure |
|---|
| >2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ... | Back alignment and structure |
|---|
| >1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
| >2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 | Back alignment and structure |
|---|
| >1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 | Back alignment and structure |
|---|
| >3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 401 | ||||
| d1phpa_ | 394 | c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus st | 1e-150 | |
| d1qpga_ | 415 | c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yea | 1e-142 | |
| d1vpea_ | 398 | c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga | 1e-140 | |
| d1ltka_ | 417 | c.86.1.1 (A:) Phosphoglycerate kinase {Malaria par | 1e-138 | |
| d1hdia_ | 413 | c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus sc | 1e-138 | |
| d1v6sa_ | 390 | c.86.1.1 (A:) Phosphoglycerate kinase {Thermus the | 1e-129 | |
| d16pka_ | 415 | c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma | 1e-121 |
| >d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 429 bits (1103), Expect = e-150
Identities = 244/399 (61%), Positives = 303/399 (75%), Gaps = 8/399 (2%)
Query: 3 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILS 62
KK+ +++ D++GKRVF RVD NVP++ ITDD R+RAA+PTI+YL+ HGAKVIL+
Sbjct: 2 NKKT---IRDVDVRGKRVFCRVDFNVPMEQG-AITDDTRIRAALPTIRYLIEHGAKVILA 57
Query: 63 SHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENV 121
SHLGRPKG V + L + RL ELL V N+ +G+EV+ V + EG VLLLENV
Sbjct: 58 SHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENV 117
Query: 122 RFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELD 181
RF+ EEKNDPE AK A LADLYVNDAFG+AHRAHASTEG+A +L P+VAGFLM+KEL+
Sbjct: 118 RFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKELE 176
Query: 182 YLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSS 241
L A+SNP +PF AI+GG+KV KIGVI++LLEKVD L++GGG+ +TF KA GH VG S
Sbjct: 177 VLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKS 236
Query: 242 LVEEDKLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVG 301
L+EEDK++LA S MEKAK KGV +P DVV+AD+FA DAN+KVVP AIP W LD+G
Sbjct: 237 LLEEDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIG 296
Query: 302 PDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSV 361
P + + + + +K ++WNGPMGVFE D FA GT+AIA+ LAE ++IGGGDS
Sbjct: 297 PKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEALDT--YSVIGGGDSA 354
Query: 362 AAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 400
AAVEK GLADKM HISTGGGASLE +EGK LPGV+AL+D
Sbjct: 355 AAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393
|
| >d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 415 | Back information, alignment and structure |
|---|
| >d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} Length = 398 | Back information, alignment and structure |
|---|
| >d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 417 | Back information, alignment and structure |
|---|
| >d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 | Back information, alignment and structure |
|---|
| >d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} Length = 390 | Back information, alignment and structure |
|---|
| >d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} Length = 415 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 401 | |||
| d1v6sa_ | 390 | Phosphoglycerate kinase {Thermus thermophilus [Tax | 100.0 | |
| d1phpa_ | 394 | Phosphoglycerate kinase {Bacillus stearothermophil | 100.0 | |
| d1vpea_ | 398 | Phosphoglycerate kinase {Thermotoga maritima [TaxI | 100.0 | |
| d1qpga_ | 415 | Phosphoglycerate kinase {Baker's yeast (Saccharomy | 100.0 | |
| d16pka_ | 415 | Phosphoglycerate kinase {Trypanosoma brucei [TaxId | 100.0 | |
| d1ltka_ | 417 | Phosphoglycerate kinase {Malaria parasite (Plasmod | 100.0 | |
| d1hdia_ | 413 | Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: | 100.0 |
| >d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8e-142 Score=1075.18 Aligned_cols=389 Identities=51% Similarity=0.840 Sum_probs=380.0
Q ss_pred ccccccccCCCCEEEEEeccCCccCCCCcccchhhHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCChhhHHHHHHh
Q 040813 7 VSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSE 86 (401)
Q Consensus 7 i~~l~d~d~~gK~VlvRvD~NvP~~~~g~I~D~~RI~~~lpTI~~L~~~gakvvl~SHlGRP~g~~~~~SL~~va~~L~~ 86 (401)
++||+|+|++|||||||||||||++ +|+|+||+||++++|||+||+++||||||+||||||+|.++++||+||+++|++
T Consensus 1 mktl~d~~~~~k~Vl~R~D~NvPi~-~g~i~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~Sl~~v~~~l~~ 79 (390)
T d1v6sa_ 1 MRTLLDLDPKGKRVLVRVDYNVPVQ-DGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRA 79 (390)
T ss_dssp CCBGGGSCCTTCEEEEECCCCCCEE-TTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHH
T ss_pred CCchhhcCCCCCEEEEEeccCCCcc-CCeECChHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCcccHHHHHHHHHh
Confidence 4678888999999999999999997 589999999999999999999999999999999999998889999999999999
Q ss_pred hhCCceeeccCCCCHHHHHHHhcCCCCcEEEEecccCCccccCCcHHHHHHHhhcCCEEeecccccccccccchhhhhcc
Q 040813 87 LLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKF 166 (401)
Q Consensus 87 ~L~~~V~f~~d~~g~~~~~~i~~l~~G~vlLLEN~Rf~~eE~~~~~~f~~~LA~l~DvyVNDAFg~aHR~haS~vgi~~~ 166 (401)
+|+++|.|+++|+|+.+.+++++|++|||+||||+|||+||++|++.|+++||++||+|||||||||||+|||++|||++
T Consensus 80 ~l~~~v~~~~~~~~~~~~~~~~~l~~g~i~lLENvRF~~~E~~nd~~f~~~La~l~DiyVNDAF~~aHR~haS~vgi~~~ 159 (390)
T d1v6sa_ 80 HLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARL 159 (390)
T ss_dssp HCTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGGT
T ss_pred hcccceeeeeccccccccccccccccccEEeehhhhhcccccccchHHHHhhhhcCceEEecchhhhhhhccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchhHHHHHHHHHhhhcCCCCCeEEEecCCccccHHHHHHHHHHhcCeEEEchHHHHHHHHHcCCccCCcccccC
Q 040813 167 LKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEED 246 (401)
Q Consensus 167 l~~~~aG~lmekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~~i~~Ll~kvD~lliGG~ma~tFl~a~G~~iG~sl~e~~ 246 (401)
+ |+|||+|||||+++|++++++|+||+++|+|||||||||++|++|+++||+|++||+||||||+|+|++||+|++|++
T Consensus 160 l-ps~aG~l~ekEi~~L~~~l~~~~rP~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~mAntFL~a~G~~IG~sl~e~~ 238 (390)
T d1v6sa_ 160 L-PAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEED 238 (390)
T ss_dssp S-CEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGG
T ss_pred h-hhhhHHHHHHHHHHHHHHHhhccCceEEEEecccccchHHHHHHHHHhcceeeecccHHHHHHHHcCCccCcchhhhh
Confidence 7 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCeEEccceEEEeccccCCCCeeEEeCCCCCCCCcccccChHHHHHHHHHhccCCeEEEeCcccc
Q 040813 247 KLDLATSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGV 326 (401)
Q Consensus 247 ~~~~a~~il~~a~~~~~~I~lP~D~vv~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~Gv 326 (401)
.++.++++++.+++++++|++|+|++|+.++..+.++.++++++||++|+++||||+|++.|+++|++|+|||||||||+
T Consensus 239 ~~~~~~~~~~~a~~~~~~i~lp~dv~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmGv 318 (390)
T d1v6sa_ 239 RLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGV 318 (390)
T ss_dssp GHHHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSC
T ss_pred hhhhhHhHHHhhhhhccccccccceeecccccCCccccccchhhhhhhhhhhhhhhhhhHHHHHHhcccceEEEEccccc
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred cCcccchHHHHHHHHHHHHhhCCCcEEEEecchHHHHHHHcCCCCCceEEecchhhHHHhhcCCCCchhhccc
Q 040813 327 FEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 399 (401)
Q Consensus 327 fE~~~F~~GT~~i~~aia~~~~~~a~sivGGGdt~~a~~~~g~~d~~shvSTGGGA~Le~LeG~~LPgv~aL~ 399 (401)
||+++|+.||.+|+++|+++ .+||||||||||++|++++|+.++||||||||||+|+||||++||||+||+
T Consensus 319 fE~~~F~~GT~~i~~aia~~--~~a~sIiGGGdT~aai~~~g~~~~fshVSTGGGA~Le~L~G~~LPgi~aL~ 389 (390)
T d1v6sa_ 319 FEVPPFDEGTLAVGQAIAAL--EGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE 389 (390)
T ss_dssp TTSTTTTHHHHHHHHHHHTC--SSCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHHSCCHHHHTTC
T ss_pred cccCchhHHHHHHHHHHHhc--CCCEEEEeCHHHHHHHHHcCCcCCCcEEeCCHHHHHHHHCCCCccchhhhc
Confidence 99999999999999999865 368999999999999999999999999999999999999999999999996
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| >d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
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| >d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
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| >d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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