Citrus Sinensis ID: 040821

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MVGIDEDGKLLTIISKVASAHKDSSVITSSLFSFLKKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLLICEKISDGI
Secondary Structure (PSIPRED)
cccccccccEEEEEHHHHHHccccccccccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHccccccccccccccccccEEEEcccEEEEEEEcccccccccEEEEEEccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEcccccccccEEEEEccccEEEEEEcccccccccccEEEEEcccHHHcccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccEcccccEEHHHHHHHHccccccHHHHHHHHHHHHcccccccHEEEEEEcccccccccccHEEEcccccEEEEHHHcccccccccccHEEEEEEccccccEEEEEEccccccccEEEEEEEEccEEEEEEEccccEEccccccEEEEEccccEEEEEccccccccccHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mvgidedgKLLTIISKVAsahkdssvITSSLFSFLkkkegdttSQIIRMEfnlpaglnpngfkaaiddegllTLTFEklvpnhsetpsdleKVSVQWKSkkgvfhfkahlpagtkmedmMVGIEGRKSLMIGIcdlskteegdtstlmcvdgknfrsfilpdgvnpngfktamddagVLTVTFtklkpekkklrpiakKSLGCLAHAACLLICEKISDGI
Flexible Loop (DISEMBL)
MVGIDEDGKLLTIISkvasahkdssvitsSLFSFLKKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVpnhsetpsdlEKVSVQWKSKKGVFHfkahlpagtkmeDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVtftklkpekkklRPIAKKSLGCLAHAACLLICEKISDGI
Low Complexity Region (SEG)
MVGIDEDGKLLTIISKVASAHKDSSVITSSLFSFLKKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLLICEKISDGI
Disordered region (IsUnstruct)
*********LLTIISKVASA****SVITSSLFSFLKKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVP***********VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLLICEKI****
Disordered Region (DISOPRED)
********KLLTIISK*A*******VITS***********************LPAGLNPNGFKAAIDDEGLLTLTFEK***********LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRK********************MCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVT*******************GCLAHAACLLICEKISDG*
Disordered Region (DISEMBL)
MVGIDEDGKLLTIISKVASAHKDSSVITSSLFSFLKKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPN************VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLLICEKISDGI
Disordered Region (DISPRO)
***ID*DGKLLTIISKVASAHKD*SVITSSLFSFLKKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLLICEKISDG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGIDEDGKLLTIISKVASAHKDSSVITSSLFSFLKKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLLICEKISDGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q84J50	159	17.7 kDa class I heat sho	yes	no	0.522	0.723	0.305	8e-05
Q9LNW0	157	17.8 kDa class I heat sho	yes	no	0.445	0.624	0.382	0.0001
Q9XIE3	155	17.6 kDa class I heat sho	no	no	0.445	0.632	0.382	0.0002
Q84Q77	161	17.9 kDa class I heat sho	no	no	0.45	0.614	0.333	0.0004
P04795	154	17.6 kDa class I heat sho	no	no	0.445	0.636	0.358	0.0005
P04794	154	17.5 kDa class I heat sho	no	no	0.454	0.649	0.355	0.0005
P05478	161	18.5 kDa class I heat sho	no	no	0.518	0.708	0.338	0.0005
P27880	158	18.2 kDa class I heat sho	N/A	no	0.454	0.632	0.365	0.0005
P27879	143	18.1 kDa class I heat sho	N/A	no	0.454	0.699	0.346	0.0007
P04793	153	17.5 kDa class I heat sho	no	no	0.454	0.653	0.346	0.0009

>sp|Q84J50|HS177_ORYSJ 17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 79  LVPNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSK 138
           L P  +   +      + WK    V  FKA +P G K E++ V ++    L I   + S+
Sbjct: 38  LFPRANSDAAAFAGARIDWKETPEVHVFKADVP-GLKKEEVKVEVDDGNILQIS-GERSR 95

Query: 139 TEEGDTSTLMCVD---GKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRP 195
            +E  +     V+   GK  R F LP+   P   K +M++ GVLTVT  K +P+K  ++ 
Sbjct: 96  EQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMEN-GVLTVTVPKEEPKKPDVKS 154

Query: 196 I 196
           I
Sbjct: 155 I 155

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LNW0|HS178_ARATH 17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 95  VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDTSTLMCVDGK 153
           V WK       FKA LP G K E++ V IE    L I G   + K E+ DT   +     
Sbjct: 50  VDWKETAEAHVFKADLP-GMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSG 108

Query: 154 NF-RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLR 194
            F R F LP+ V  +  K +M++ GVLTVT  K++  KKK +
Sbjct: 109 QFSRKFKLPENVKMDQVKASMEN-GVLTVTVPKVEEAKKKAQ 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIE3|HS17A_ARATH 17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 95  VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDTSTLMCVDGK 153
           V WK       FKA LP G K E++ V IE    L I G   + K E+ DT   +     
Sbjct: 48  VDWKETAEAHVFKADLP-GMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSG 106

Query: 154 NF-RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLR 194
            F R F LP+ V  +  K +M++ GVLTVT  K++  KKK +
Sbjct: 107 GFSRKFRLPENVKMDQVKASMEN-GVLTVTVPKVETNKKKAQ 147

Possesses chaperone activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84Q77|HS17A_ORYSJ 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 95  VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVD--- 151
           + WK       FKA +P G K E++ V ++    L I   + +K +E  T     V+   
Sbjct: 56  IDWKETPEAHVFKADVP-GLKKEEVKVEVDDGNILQIS-GERNKEQEEKTDQWHRVERSS 113

Query: 152 GKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
           GK  R F LPD   P   K +M++ GVLTVT  K + +K  ++ I
Sbjct: 114 GKFLRRFRLPDNAKPEQIKASMEN-GVLTVTVPKEEAKKPDVKSI 157

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P04795|HSP15_SOYBN 17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 95  VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDTSTLMCVD-- 151
           V WK  +     KA +P G K E++ V IE  + L I G  ++ K ++ DT     VD  
Sbjct: 49  VDWKETQEAHVLKADIP-GLKKEEVKVQIEDDRVLQISGERNVEKEDKNDT--WHRVDRS 105

Query: 152 -GKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
            GK  R F LP+       K  M++ GVLTVT  K + +K  ++PI
Sbjct: 106 SGKFMRRFRLPENAKVEQVKACMEN-GVLTVTIPKEEVKKSDVKPI 150

Glycine max (taxid: 3847)

>sp|P04794|HSP14_SOYBN 17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 95  VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDT-STLMCVDG 152
           V WK       FKA +P G K E++ V IE  + L I G  ++ K ++ DT   +    G
Sbjct: 49  VDWKETPEAHVFKADIP-GLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSG 107

Query: 153 KNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
           K  R F LP+    N  K +M++ GVLTVT  K + +K  ++ I
Sbjct: 108 KFTRRFRLPENAKVNEVKASMEN-GVLTVTVPKEEVKKPDVKAI 150

Glycine max (taxid: 3847)

>sp|P05478|HSP16_SOYBN 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 4/118 (3%)

Query: 81  PNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKT 139
           P  S   S      V WK       FKA +P G K E++ V IE  K L I G  ++ K 
Sbjct: 42  PEFSRENSAFVSTRVDWKETPEAHVFKADIP-GLKKEEVKVQIEDDKVLQISGERNVEKE 100

Query: 140 EEGDT-STLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
           ++ DT   +    GK  R F LP+       K +M++ GVLTVT  K + +K  ++ I
Sbjct: 101 DKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMEN-GVLTVTVPKEEVKKPDVKAI 157

Glycine max (taxid: 3847)

>sp|P27880|HSP12_MEDSA 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 95  VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDT-STLMCVDG 152
           V WK       FKA LP G K E++ V IE  + L I G   + K ++ D    L    G
Sbjct: 53  VDWKETPEAHVFKADLP-GMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSG 111

Query: 153 KNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
           K  R F LP+    +  K AM++ GVLTVT  K + +K +++ I
Sbjct: 112 KFMRRFRLPENAKMDQVKAAMEN-GVLTVTVPKEEVKKPEVKTI 154

Medicago sativa (taxid: 3879)

>sp|P27879|HSP11_MEDSA 18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 95  VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDT-STLMCVDG 152
           + WK       FKA LP G K E++ V IE  + L I G  ++ K ++ D    +    G
Sbjct: 38  IDWKETPEAHVFKADLP-GLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSG 96

Query: 153 KNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
           K  R F LP+    +  K AM++ GVLTVT  K + +K +++ I
Sbjct: 97  KFMRRFRLPENAKMDQVKAAMEN-GVLTVTVPKEEIKKPEVKSI 139

Medicago sativa (taxid: 3879)

>sp|P04793|HSP13_SOYBN 17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1

 Score = 43.9 bits (102), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 95  VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDTSTLMCVDGK 153
           V WK       F+A +P G K E++ V IE  + L I G  +L K ++ DT   +     
Sbjct: 48  VDWKETPEAHVFEADIP-GLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSG 106

Query: 154 NF-RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
           NF R F LP+       K +M++ GVLTVT  K + +K  ++ I
Sbjct: 107 NFMRRFRLPENAKVEQVKASMEN-GVLTVTVPKEEVKKPDVKAI 149

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
4185754	153	cytosolic I small heat shock protein HSP	0.477	0.686	0.362	0.0003
351722245	153	seed maturation protein PM31 [Glycine ma	0.481	0.692	0.350	0.0003
4185748	153	cytosolic I small heat shock protein HSP	0.459	0.660	0.339	0.0008

>gi|4185754|gb|AAD09181.1| cytosolic I small heat shock protein HSP17.2IB [Funaria hygrometrica]

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 57/116 (49%), Gaps = 11/116 (9%)

Query: 88  SDLEKVS---VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEE--- 141
           SD++ V+   + W+       FKA LP  TK E  +  +EGR    + IC   K EE   
Sbjct: 39  SDVQAVASTRIDWRETPEAHIFKADLPGLTKEEVKVQVLEGR---TLEICGERKKEEVQK 95

Query: 142 GDTSTLM-CVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
            DT   M    G   R F LP+G N +  K  + D GVLTVT  K++  K ++R I
Sbjct: 96  SDTWHRMERAQGSFMRRFRLPEGTNTDDVKAQVQD-GVLTVTVPKVQKPKPQVRQI 150

Source: Funaria hygrometrica

Species: Funaria hygrometrica

Genus: Funaria

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722245|ref|NP_001238005.1| seed maturation protein PM31 [Glycine max] gi|4838149|gb|AAD30865.1|AF117885_1 seed maturation protein PM31 [Glycine max]

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 8/114 (7%)

Query: 88  SDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTL 147
           S L    V W+       F+A LP G K ED+ V +E  K L I   +  K +E      
Sbjct: 40  SSLAHAHVDWRETDKAHIFRADLP-GVKKEDLKVQVEENKILQIS-GERVKEKEDQNDKW 97

Query: 148 MCVD---GKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKL--KPEKKKLRPI 196
             V+   G   R F LP+  NPN     +++ GVL VT  K+  KPE K +R I
Sbjct: 98  HRVERQCGSFLRRFRLPEDANPNQISCTLEN-GVLNVTVPKVEKKPENKNVRQI 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4185748|gb|AAD09178.1| cytosolic I small heat shock protein HSP17.2IA [Funaria hygrometrica]

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 95  VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDT-STLMCVDGK 153
           + W+       FKA LP   K E  +  +EGR   + G     + ++GDT   +    G 
Sbjct: 49  IDWRETPEAHVFKADLPGLKKEEVKVQVVEGRTLEISGERKKEEVQKGDTWHRVERAQGS 108

Query: 154 NFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
             R F LP+G N +  K  + D GVLTVT  KL+  K ++R I
Sbjct: 109 FMRRFRLPEGTNVDEVKAQVQD-GVLTVTIPKLQKPKPQVRQI 150

Source: Funaria hygrometrica

Species: Funaria hygrometrica

Genus: Funaria

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
UNIPROTKB|Q84Q72	161	HSP18.1 "18.1 kDa class I heat	0.495	0.677	0.344	2.8e-08
TAIR|locus:2025921	155	AT1G59860 [Arabidopsis thalian	0.486	0.690	0.369	2.8e-08
TAIR|locus:2024997	157	AT1G07400 [Arabidopsis thalian	0.477	0.668	0.381	3.6e-08
UNIPROTKB|P31673	154	HSP17.4 "17.4 kDa class I heat	0.522	0.746	0.314	1.1e-07
UNIPROTKB|Q84J50	159	HSP17.7 "17.7 kDa class I heat	0.522	0.723	0.305	1.1e-07
TAIR|locus:2042977	153	AT2G29500 "AT2G29500" [Arabido	0.640	0.921	0.315	2.4e-07
UNIPROTKB|Q84Q77	161	HSP17.9A "17.9 kDa class I hea	0.495	0.677	0.327	4.2e-07
UNIPROTKB|Q943E7	149	HSP16.9C "16.9 kDa class I hea	0.540	0.798	0.314	9.2e-07
UNIPROTKB|Q943E6	150	HSP16.9B "16.9 kDa class I hea	0.540	0.793	0.298	2.6e-06
UNIPROTKB|P27777	150	HSP16.9A "16.9 kDa class I hea	0.540	0.793	0.290	1.7e-05

UNIPROTKB|Q84Q72 HSP18.1 "18.1 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 128 (50.1 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 40/116 (34%), Positives = 57/116 (49%)

Query:    84 SETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGD 143
             SET +      + WK       FKA +P G K E++ V +E    L I   + SK +E  
Sbjct:    46 SETAA-FAGARIDWKETPEAHVFKADVP-GLKKEEVKVEVEDGNVLQIS-GERSKEQEEK 102

Query:   144 TSTLMCVD---GKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
             T     V+   GK  R F LP+   P   K +M++ GVLTVT  K +P+K  ++ I
Sbjct:   103 TDKWHRVERSSGKFLRRFRLPENTKPEQIKASMEN-GVLTVTVPKEEPKKPDVKSI 157

GO:0009408 "response to heat" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0045471 "response to ethanol" evidence=IEP

GO:0046685 "response to arsenic-containing substance" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0046688 "response to copper ion" evidence=IEP

TAIR|locus:2025921 AT1G59860 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 41/111 (36%), Positives = 55/111 (49%)

Query:    84 SETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEG 142
             S + S +    V WK       FKA LP G K E++ V IE    L I G   + K E+ 
Sbjct:    37 SSSSSAIANARVDWKETAEAHVFKADLP-GMKKEEVKVEIEDDSVLKISGERHVEKEEKQ 95

Query:   143 DTSTLMCVDGKNF-RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKK 192
             DT   +      F R F LP+ V  +  K +M++ GVLTVT  K++  KKK
Sbjct:    96 DTWHRVERSSGGFSRKFRLPENVKMDQVKASMEN-GVLTVTVPKVETNKKK 145

GO:0005737 "cytoplasm" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;ISS

GO:0006457 "protein folding" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009651 "response to salt stress" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

TAIR|locus:2024997 AT1G07400 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 42/110 (38%), Positives = 56/110 (50%)

Query:    85 ETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGD 143
             ET S +    V WK       FKA LP G K E++ V IE    L I G   + K E+ D
Sbjct:    41 ET-SAITNARVDWKETAEAHVFKADLP-GMKKEEVKVEIEDDSVLKISGERHVEKEEKQD 98

Query:   144 T-STLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKK 192
             T   +    G+  R F LP+ V  +  K +M++ GVLTVT  K++  KKK
Sbjct:    99 TWHRVERSSGQFSRKFKLPENVKMDQVKASMEN-GVLTVTVPKVEEAKKK 147

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=IEP

UNIPROTKB|P31673 HSP17.4 "17.4 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 123 (48.4 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 38/121 (31%), Positives = 56/121 (46%)

Query:    79 LVPNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSK 138
             L P  +   +      + WK       FKA +P G K E++ V +E    L I   +  K
Sbjct:    33 LFPRANSDAAAFAGARIDWKETPEAHVFKADVP-GLKKEEVKVEVEDGNVLQIS-GERIK 90

Query:   139 TEEGDTSTLMCVD---GKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRP 195
              +E  T     V+   GK  R F LP+   P   K +M++ GVLTVT  K +P+K  ++ 
Sbjct:    91 EQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMEN-GVLTVTVPKEEPKKPDVKS 149

Query:   196 I 196
             I
Sbjct:   150 I 150

GO:0009408 "response to heat" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0045471 "response to ethanol" evidence=IEP

GO:0046685 "response to arsenic-containing substance" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0046688 "response to copper ion" evidence=IEP

UNIPROTKB|Q84J50 HSP17.7 "17.7 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 123 (48.4 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 37/121 (30%), Positives = 58/121 (47%)

Query:    79 LVPNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSK 138
             L P  +   +      + WK    V  FKA +P G K E++ V ++    L I   + S+
Sbjct:    38 LFPRANSDAAAFAGARIDWKETPEVHVFKADVP-GLKKEEVKVEVDDGNILQIS-GERSR 95

Query:   139 TEEGDTSTLMCVD---GKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRP 195
              +E  +     V+   GK  R F LP+   P   K +M++ GVLTVT  K +P+K  ++ 
Sbjct:    96 EQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMEN-GVLTVTVPKEEPKKPDVKS 154

Query:   196 I 196
             I
Sbjct:   155 I 155

GO:0009408 "response to heat" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0045471 "response to ethanol" evidence=IEP

GO:0046685 "response to arsenic-containing substance" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0046688 "response to copper ion" evidence=IEP

TAIR|locus:2042977 AT2G29500 "AT2G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 47/149 (31%), Positives = 72/149 (48%)

Query:    53 LPAGLNPNGFKAAIDDEGLLTL--TFEKLVPNH-SETPSDLEKVSVQWKSKKGVFHFKAH 109
             +P+  N N  ++ I D   L +   F++L  +  S   S +    V W+       FKA 
Sbjct:     4 IPSFFN-NNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKAD 62

Query:   110 LPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDT-STLMCVDGKNFRSFILPDGVNPN 167
             LP G K E++ V IE    L I G   + K ++ DT   +    G+  R F LP+ V  +
Sbjct:    63 LP-GLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMD 121

Query:   168 GFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
               K AM++ GVLTVT  K + +K  ++ I
Sbjct:   122 QVKAAMEN-GVLTVTVPKAETKKADVKSI 149

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=IEP;ISS;RCA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

UNIPROTKB|Q84Q77 HSP17.9A "17.9 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 118 (46.6 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 38/116 (32%), Positives = 56/116 (48%)

Query:    84 SETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGD 143
             SET +      + WK       FKA +P G K E++ V ++    L I   + +K +E  
Sbjct:    46 SETAA-FAGARIDWKETPEAHVFKADVP-GLKKEEVKVEVDDGNILQIS-GERNKEQEEK 102

Query:   144 TSTLMCVD---GKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
             T     V+   GK  R F LPD   P   K +M++ GVLTVT  K + +K  ++ I
Sbjct:   103 TDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMEN-GVLTVTVPKEEAKKPDVKSI 157

GO:0009408 "response to heat" evidence=IEP

UNIPROTKB|Q943E7 HSP16.9C "16.9 kDa class I heat shock protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 115 (45.5 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 39/124 (31%), Positives = 59/124 (47%)

Query:    76 FEKLVPNHSETPSD-LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GI 133
             F  LVP  S+  +       V WK       FKA LP G K E++ V +E    L+I G 
Sbjct:    24 FRSLVPATSDRDTAAFANARVDWKETPESHVFKADLP-GVKKEEVKVEVEEGNVLVISGQ 82

Query:   134 CDLSKTEEGDT-STLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKK 192
                 K ++ D    +    G+  R F LP+    +  K +M++ GVLTVT  K + +K +
Sbjct:    83 RSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMEN-GVLTVTVPKAEVKKPE 141

Query:   193 LRPI 196
             ++ I
Sbjct:   142 VKAI 145

GO:0009408 "response to heat" evidence=IEP

UNIPROTKB|Q943E6 HSP16.9B "16.9 kDa class I heat shock protein 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 111 (44.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 37/124 (29%), Positives = 58/124 (46%)

Query:    76 FEKLVPNHSETPSD-LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GI 133
             F  +VP  S+  +       + WK       FKA LP G K E++ V +E    L+I G 
Sbjct:    25 FRSVVPATSDNDTAAFANARIDWKETPESHVFKADLP-GVKKEEVKVEVEEGNVLVISGQ 83

Query:   134 CDLSKTEEGDT-STLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKK 192
                 K ++ D    +    G+  R F LP+    +  K  M++ GVLTVT  K + +K +
Sbjct:    84 RSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMEN-GVLTVTVPKAEVKKPE 142

Query:   193 LRPI 196
             ++ I
Sbjct:   143 VKAI 146

GO:0009408 "response to heat" evidence=IEP

UNIPROTKB|P27777 HSP16.9A "16.9 kDa class I heat shock protein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 36/124 (29%), Positives = 58/124 (46%)

Query:    76 FEKLVPNHSETPSD-LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GI 133
             F  +VP  S+  +       + WK       FKA LP G K E++ V +E    L+I G 
Sbjct:    25 FRSVVPATSDNDTAAFANARIDWKETPESHVFKADLP-GVKKEEVKVEVEEGNVLVISGQ 83

Query:   134 CDLSKTEEGDT-STLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKK 192
                 K ++ D    +    G+  R F LP+    +  K  +++ GVLTVT  K + +K +
Sbjct:    84 RSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLEN-GVLTVTVPKAEVKKPE 142

Query:   193 LRPI 196
             ++ I
Sbjct:   143 VKAI 146

GO:0009408 "response to heat" evidence=IEP;IDA

GO:0051259 "protein oligomerization" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
pfam00011	101	pfam00011, HSP20, Hsp20/alpha crystallin family	1e-09
cd06472	92	cd06472, ACD_ScHsp26_like, Alpha crystallin domain	5e-05
cd06464	88	cd06464, ACD_sHsps-like, Alpha-crystallin domain (	9e-04

>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 5/101 (4%)

Query: 97  WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNF- 155
            K  K  F  K  +P G K E++ V +E  + L+ G  +  K EE D         ++F 
Sbjct: 2   IKEDKDAFVVKLDVP-GFKPEELKVKVEDNRVLVKGKHE--KEEEDDHGLRSERSYRSFS 58

Query: 156 RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
           R F+LP+  +P+  K ++ D GVLTVT  KL+P +KK R I
Sbjct: 59  RKFVLPENADPDKVKASLKD-GVLTVTVPKLEPPEKKPRRI 98

Length = 101

>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 94  SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGD-TSTLMCV-- 150
            V WK       FKA +P   K ED+ V +E  + L I      K EE         V  
Sbjct: 1   RVDWKETPEAHVFKADVPGVKK-EDVKVEVEDGRVLRI--SGERKKEEEKKGDDWHRVER 57

Query: 151 -DGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTK 185
             G+  R F LP+  + +  K  +++ GVLTVT  K
Sbjct: 58  SSGRFVRRFRLPENADADEVKAFLEN-GVLTVTVPK 92

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative stress. Also belonging to this group is wheat HSP16.9 which differs in quaternary structure from the shell-type particles of ScHsp26, it assembles as a dodecameric double disc, with each disc organized as a trimer of dimers. Length = 92

>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 97  WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDTSTLMCVDGKNF 155
                  +  +A LP G K ED+ V +E    L I G  +  + EE +        G   
Sbjct: 2   VYETDDAYVVEADLP-GFKKEDIKVEVEDGV-LTISGEREEEEEEEENYLRRERSYGSFS 59

Query: 156 RSFILPDGVNPNGFKTAMDDAGVLTVTFTK 185
           RSF LP+ V+P+  K ++++ GVLT+T  K
Sbjct: 60  RSFRLPEDVDPDKIKASLEN-GVLTITLPK 88

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
COG0071	146	IbpA Molecular chaperone (small heat shock protein	99.92
PRK10743	137	heat shock protein IbpA; Provisional	99.92
PRK11597	142	heat shock chaperone IbpB; Provisional	99.92
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	99.91
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	99.87
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	99.87
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	99.86
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	99.86
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	99.85
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	99.84
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	99.84
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	99.84
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	99.84
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	99.83
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	99.81
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	99.8
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	99.79
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	99.78
KOG3591	173	consensus Alpha crystallins [Posttranslational mod	99.78
KOG0710	196	consensus Molecular chaperone (small heat-shock pr	99.73
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	99.7
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.44
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.18
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	98.84
cd06463	84	p23_like Proteins containing this p23_like domain	98.8
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	98.44
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	98.08
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	97.7
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	97.58
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	97.41
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	97.4
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	97.02
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	96.98
cd06488	87	p23_melusin_like p23_like domain similar to the C-	96.97
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	96.94
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	96.33
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.77
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	94.1
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	94.05
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	93.81
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	90.97
PF14913	194	DPCD: DPCD protein family	80.96

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.5e-24  Score=176.34  Aligned_cols=104  Identities=31%  Similarity=0.481  Sum_probs=90.1

Q ss_pred             CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccC
Q 040821           91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPN  167 (220)
Q Consensus        91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e  167 (220)
                      ..|++||+|++++|+|.++|| ||+++||+|.++++ .|+|+ |++..+.+.+...+++.   +|.|.|+|+||+.|+++
T Consensus        39 ~~P~vdi~e~~~~~~I~~elP-G~~kedI~I~~~~~-~l~I~-g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~  115 (146)
T COG0071          39 GTPPVDIEETDDEYRITAELP-GVDKEDIEITVEGN-TLTIR-GEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPE  115 (146)
T ss_pred             CCCcEEEEEcCCEEEEEEEcC-CCChHHeEEEEECC-EEEEE-EEecccccccCCceEEEEEEeeeEEEEEECccccccc
Confidence            689999999999999999999 99999999999999 69999 98875444344444433   99999999999999999


Q ss_pred             ceEEEeccCCEEEEEEeccCCCCCCeeEEec
Q 040821          168 GFKTAMDDAGVLTVTFTKLKPEKKKLRPIAK  198 (220)
Q Consensus       168 ~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I  198 (220)
                      .|+|+|+ ||||+|+|||.++++.+.+.|+|
T Consensus       116 ~~~A~~~-nGvL~I~lpk~~~~~~~~~~i~I  145 (146)
T COG0071         116 VIKAKYK-NGLLTVTLPKAEPEEKKPKRIEI  145 (146)
T ss_pred             ceeeEee-CcEEEEEEeccccccccCceeec
Confidence            9999999 99999999999987555555555

>PRK10743 heat shock protein IbpA; Provisional

Probab=99.92  E-value=1.4e-24  Score=176.06  Aligned_cols=100  Identities=15%  Similarity=0.261  Sum_probs=83.8

Q ss_pred             CceeeEEE-eCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccC
Q 040821           92 KVSVQWKS-KKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPN  167 (220)
Q Consensus        92 ~p~vDi~E-~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e  167 (220)
                      .|++||++ ++++|.|.++|| |++++||+|++++| +|+|+ |+++.+.  ++..|++.   +|+|+|+|.||++||.+
T Consensus        34 ~p~~di~ee~~~~~~v~aelP-Gv~kedi~V~v~~~-~LtI~-ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~  108 (137)
T PRK10743         34 YPPYNVELVDENHYRIAIAVA-GFAESELEITAQDN-LLVVK-GAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVR  108 (137)
T ss_pred             CCcEEEEEcCCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEECccc--cCCcEEEEEEECCEEEEEEECCCCcccC
Confidence            38899994 899999999999 99999999999999 79999 9865432  33445543   89999999999999999


Q ss_pred             ceEEEeccCCEEEEEEeccCCCCCCeeEEecc
Q 040821          168 GFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKK  199 (220)
Q Consensus       168 ~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~  199 (220)
                      +  |+|+ ||||+|++||.++++.+.++|+|+
T Consensus       109 ~--A~~~-dGVL~I~lPK~~~~~~~~r~I~I~  137 (137)
T PRK10743        109 G--ANLV-NGLLYIDLERVIPEAKKPRRIEIN  137 (137)
T ss_pred             c--CEEe-CCEEEEEEeCCCccccCCeEEeeC
Confidence            4  9999 999999999975555555666663

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=99.92  E-value=1.9e-24  Score=176.45  Aligned_cols=102  Identities=16%  Similarity=0.231  Sum_probs=85.0

Q ss_pred             CCceeeEEE-eCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCccc
Q 040821           91 EKVSVQWKS-KKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNP  166 (220)
Q Consensus        91 ~~p~vDi~E-~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~  166 (220)
                      ..|++||+| +++.|.|.++|| |++++||+|++++| +|+|+ |+++.+  +++.+|++.   +|+|+|+|.||++||.
T Consensus        31 ~~P~vdI~e~~~~~y~v~adlP-Gv~kedi~V~v~~~-~LtI~-ge~~~~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~  105 (142)
T PRK11597         31 SFPPYNIEKSDDNHYRITLALA-GFRQEDLDIQLEGT-RLTVK-GTPEQP--EKEVKWLHQGLVNQPFSLSFTLAENMEV  105 (142)
T ss_pred             CCCcEEEEEcCCCEEEEEEEeC-CCCHHHeEEEEECC-EEEEE-EEEccc--cCCCcEEEEEEeCcEEEEEEECCCCccc
Confidence            458999998 578999999999 99999999999999 79999 986542  234456654   8999999999999999


Q ss_pred             CceEEEeccCCEEEEEEeccCCCCCCeeEEeccC
Q 040821          167 NGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKS  200 (220)
Q Consensus       167 e~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~  200 (220)
                      +  +|+|+ ||||+|+|||..++..+.++|+|+.
T Consensus       106 ~--~A~~~-nGVL~I~lPK~~~~~~~~rkI~I~~  136 (142)
T PRK11597        106 S--GATFV-NGLLHIDLIRNEPEAIAPQRIAISE  136 (142)
T ss_pred             C--cCEEc-CCEEEEEEeccCccccCCcEEEECC
Confidence            8  69999 9999999999854444556666654

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=99.91  E-value=6.2e-24  Score=159.96  Aligned_cols=89  Identities=36%  Similarity=0.557  Sum_probs=78.7

Q ss_pred             eeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccCceE
Q 040821           94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPNGFK  170 (220)
Q Consensus        94 ~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e~I~  170 (220)
                      ++||+|++++|.|.++|| |++++||+|+++++++|+|+ |+++.+...+...+++.   +|+|.|+|.||++++.++|+
T Consensus         1 ~~dv~E~~~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~-g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~   78 (92)
T cd06472           1 RVDWKETPEAHVFKADVP-GVKKEDVKVEVEDGRVLRIS-GERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVK   78 (92)
T ss_pred             CccEEEcCCeEEEEEECC-CCChHhEEEEEeCCCEEEEE-EEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCE
Confidence            479999999999999999 99999999999975579999 98765544444555544   89999999999999999999


Q ss_pred             EEeccCCEEEEEEec
Q 040821          171 TAMDDAGVLTVTFTK  185 (220)
Q Consensus       171 A~~~~dGVLtItlPK  185 (220)
                      |+|+ ||||+|++||
T Consensus        79 A~~~-nGvL~I~lPK   92 (92)
T cd06472          79 AFLE-NGVLTVTVPK   92 (92)
T ss_pred             EEEE-CCEEEEEecC
Confidence            9999 9999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=99.87  E-value=5.5e-22  Score=149.15  Aligned_cols=88  Identities=26%  Similarity=0.416  Sum_probs=76.3

Q ss_pred             ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCC--CeEEEE---EeEEEEEEECCCCcccC
Q 040821           93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDT--STLMCV---DGKNFRSFILPDGVNPN  167 (220)
Q Consensus        93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~--~~~~r~---~g~F~R~~~LPe~Vd~e  167 (220)
                      |++||+|+++.|.|.++|| |++++||+|+++++ .|+|+ |+++...++..  ..+++.   +|.|+|+|.|| +++.+
T Consensus         1 ~~~di~e~~~~~~i~~~lP-Gv~~edi~v~~~~~-~L~I~-g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~   76 (93)
T cd06471           1 MKTDIKETDDEYIVEADLP-GFKKEDIKLDYKDG-YLTIS-AKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEE   76 (93)
T ss_pred             CceeEEEcCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHH
Confidence            4689999999999999999 99999999999998 69999 98765332222  245543   89999999999 79999


Q ss_pred             ceEEEeccCCEEEEEEec
Q 040821          168 GFKTAMDDAGVLTVTFTK  185 (220)
Q Consensus       168 ~I~A~~~~dGVLtItlPK  185 (220)
                      +|+|+|+ ||+|+|++||
T Consensus        77 ~i~A~~~-dGvL~I~lPK   93 (93)
T cd06471          77 EIKAKYE-NGVLKITLPK   93 (93)
T ss_pred             HCEEEEE-CCEEEEEEcC
Confidence            9999999 9999999998

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=99.87  E-value=1.6e-21  Score=148.05  Aligned_cols=98  Identities=29%  Similarity=0.449  Sum_probs=77.4

Q ss_pred             eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccCceEEE
Q 040821           96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPNGFKTA  172 (220)
Q Consensus        96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e~I~A~  172 (220)
                      ||+|+++.|.|.++|| ||.+++|+|+++++ .|+|+ |++. ... .+..++..   ++.|.|+|.||+++|.++|+|+
T Consensus         1 di~e~~~~~~i~~~lp-G~~~edi~I~~~~~-~L~I~-g~~~-~~~-~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~   75 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLP-GFDKEDIKIKVDDN-KLVIS-GKRK-EEE-EDDRYYRSERRYGSFERSIRLPEDVDPDKIKAS   75 (102)
T ss_dssp             EEEESSSEEEEEEE-T-TS-GGGEEEEEETT-EEEEE-EEEE-GEE-CTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEE
T ss_pred             CeEECCCEEEEEEECC-CCChHHEEEEEecC-cccee-ceee-eee-eeeeeeecccccceEEEEEcCCCcCCcceEEEE
Confidence            7999999999999999 99999999999999 69999 9776 222 23334333   8999999999999999999999


Q ss_pred             eccCCEEEEEEeccCCCCC-CeeEEecc
Q 040821          173 MDDAGVLTVTFTKLKPEKK-KLRPIAKK  199 (220)
Q Consensus       173 ~~~dGVLtItlPK~e~~k~-r~i~I~I~  199 (220)
                      |+ ||+|+|++||.+..++ ..+.|+|+
T Consensus        76 ~~-~GvL~I~~pk~~~~~~~~~~~I~I~  102 (102)
T PF00011_consen   76 YE-NGVLTITIPKKEEEEDSQPKRIPIK  102 (102)
T ss_dssp             ET-TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred             ec-CCEEEEEEEccccccCCCCeEEEeC
Confidence            99 9999999999987753 56666663

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=99.86  E-value=4.7e-21  Score=144.26  Aligned_cols=86  Identities=16%  Similarity=0.286  Sum_probs=75.3

Q ss_pred             ceeeEEEeC-CEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccCc
Q 040821           93 VSVQWKSKK-GVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPNG  168 (220)
Q Consensus        93 p~vDi~E~~-d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e~  168 (220)
                      |++||+|++ +.|+|.++|| |++++||+|.++++ .|+|+ |+++.+.+ .+.+|++.   +|+|.|+|.||+++|.+ 
T Consensus         1 p~~di~e~~~~~~~v~~~lP-G~~kedi~v~~~~~-~L~I~-g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~-   75 (90)
T cd06470           1 PPYNIEKTGENNYRITLAVA-GFSEDDLEIEVENN-QLTVT-GKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK-   75 (90)
T ss_pred             CCeeeEEcCCCeEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC-
Confidence            679999975 9999999999 99999999999998 79999 98876544 34455544   99999999999999985 


Q ss_pred             eEEEeccCCEEEEEEec
Q 040821          169 FKTAMDDAGVLTVTFTK  185 (220)
Q Consensus       169 I~A~~~~dGVLtItlPK  185 (220)
                       +|+|+ ||+|+|++|+
T Consensus        76 -~A~~~-~GvL~I~l~~   90 (90)
T cd06470          76 -GAELE-NGLLTIDLER   90 (90)
T ss_pred             -eeEEe-CCEEEEEEEC
Confidence             89999 9999999985

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=99.86  E-value=3.8e-21  Score=144.25  Aligned_cols=82  Identities=20%  Similarity=0.280  Sum_probs=71.6

Q ss_pred             eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-c
Q 040821           96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-D  174 (220)
Q Consensus        96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~  174 (220)
                      +|+++++.|.|.++|| ||+++||+|++.++ .|+|+ |++..+ . .+..|++  +.|+|+|.||++||.++|+|+| +
T Consensus         4 ~v~e~~~~~~v~~dlp-G~~~edi~V~v~~~-~L~I~-g~~~~~-~-~~~~~~~--~ef~R~~~LP~~Vd~~~i~A~~~~   76 (86)
T cd06497           4 EVRSDRDKFTIYLDVK-HFSPEDLTVKVLDD-YVEIH-GKHSER-Q-DDHGYIS--REFHRRYRLPSNVDQSAITCSLSA   76 (86)
T ss_pred             eEEEcCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEcce-e-CCCCEEE--EEEEEEEECCCCCChHHeEEEeCC
Confidence            7999999999999999 99999999999999 79999 975432 2 2233443  4799999999999999999999 7


Q ss_pred             cCCEEEEEEec
Q 040821          175 DAGVLTVTFTK  185 (220)
Q Consensus       175 ~dGVLtItlPK  185 (220)
                       ||||+|++||
T Consensus        77 -dGvL~I~~PK   86 (86)
T cd06497          77 -DGMLTFSGPK   86 (86)
T ss_pred             -CCEEEEEecC
Confidence             9999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=99.85  E-value=5.1e-21  Score=142.52  Aligned_cols=79  Identities=16%  Similarity=0.328  Sum_probs=71.0

Q ss_pred             eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-c
Q 040821           96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-D  174 (220)
Q Consensus        96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~  174 (220)
                      ||.|++++|.|.+||| ||+|+||+|+++++ .|+|+ |+++.+.   .    ..+|+|.|+|.||++||+++|+|+| +
T Consensus         2 ~v~e~~~~~~v~~dlp-G~~pedi~V~v~~~-~L~I~-ger~~~~---~----~~~g~F~R~~~LP~~vd~e~v~A~l~~   71 (81)
T cd06479           2 NVKTLGDTYQFAVDVS-DFSPEDIIVTTSNN-QIEVH-AEKLASD---G----TVMNTFTHKCQLPEDVDPTSVSSSLGE   71 (81)
T ss_pred             CccCcCCeEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEeccC---C----CEEEEEEEEEECCCCcCHHHeEEEecC
Confidence            6899999999999999 99999999999999 79999 9875332   1    1378999999999999999999998 8


Q ss_pred             cCCEEEEEEec
Q 040821          175 DAGVLTVTFTK  185 (220)
Q Consensus       175 ~dGVLtItlPK  185 (220)
                       ||+|+|++++
T Consensus        72 -~GvL~I~~~~   81 (81)
T cd06479          72 -DGTLTIKARR   81 (81)
T ss_pred             -CCEEEEEecC
Confidence             9999999986

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=99.84  E-value=8.1e-21  Score=142.78  Aligned_cols=83  Identities=23%  Similarity=0.384  Sum_probs=73.0

Q ss_pred             EeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-ccCC
Q 040821           99 SKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-DDAG  177 (220)
Q Consensus        99 E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~~dG  177 (220)
                      +.++.|.|.++|| ||+++||+|+++++ .|+|+ |++..+.+.....|.+.+|+|.|+|.||++||.++|+|+| + ||
T Consensus         4 ~~~d~~~v~~dlp-G~~~edI~V~v~~~-~L~I~-g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~-dG   79 (87)
T cd06481           4 DGKEGFSLKLDVR-GFSPEDLSVRVDGR-KLVVT-GKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSP-SG   79 (87)
T ss_pred             CccceEEEEEECC-CCChHHeEEEEECC-EEEEE-EEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCC-Cc
Confidence            5678999999999 99999999999998 69999 9865544433445666699999999999999999999999 8 99


Q ss_pred             EEEEEEec
Q 040821          178 VLTVTFTK  185 (220)
Q Consensus       178 VLtItlPK  185 (220)
                      ||+|++|+
T Consensus        80 vL~I~~P~   87 (87)
T cd06481          80 HLHIRAPR   87 (87)
T ss_pred             eEEEEcCC
Confidence            99999996

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=99.84  E-value=1.2e-20  Score=140.45  Aligned_cols=82  Identities=21%  Similarity=0.355  Sum_probs=70.6

Q ss_pred             eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-c
Q 040821           96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-D  174 (220)
Q Consensus        96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~  174 (220)
                      .+.+++++|.|.+||| ||+++||+|++.++ .|+|+ |++..+.  ....+++  +.|.|+|.||.+||.++|+|+| +
T Consensus         1 ~~~~~~~~~~v~~dlp-G~~~edI~V~v~~~-~L~I~-g~~~~~~--~~~~~~~--~ef~R~~~LP~~vd~~~i~A~~~~   73 (83)
T cd06478           1 EVRLDKDRFSVNLDVK-HFSPEELSVKVLGD-FVEIH-GKHEERQ--DEHGFIS--REFHRRYRLPPGVDPAAITSSLSA   73 (83)
T ss_pred             CeeecCceEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEceEc--CCCCEEE--EEEEEEEECCCCcChHHeEEEECC
Confidence            3788999999999999 99999999999999 69999 9754322  2233443  4799999999999999999999 6


Q ss_pred             cCCEEEEEEec
Q 040821          175 DAGVLTVTFTK  185 (220)
Q Consensus       175 ~dGVLtItlPK  185 (220)
                       ||||+|++||
T Consensus        74 -dGvL~I~~PK   83 (83)
T cd06478          74 -DGVLTISGPR   83 (83)
T ss_pred             -CCEEEEEecC
Confidence             9999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=99.84  E-value=1.3e-20  Score=140.80  Aligned_cols=83  Identities=19%  Similarity=0.290  Sum_probs=71.0

Q ss_pred             EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821           97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA  176 (220)
Q Consensus        97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d  176 (220)
                      +++++++|.|.++|| ||+|+||+|++.++ .|+|+ |++..+.  +...++  +++|+|+|.||++||.++|+|+|++|
T Consensus         2 ~~~~~~~~~v~~dlp-G~~~edi~V~v~~~-~L~I~-g~~~~~~--~~~~~~--~~eF~R~~~LP~~vd~~~i~A~~~~d   74 (84)
T cd06498           2 MRLEKDKFSVNLDVK-HFSPEELKVKVLGD-FIEIH-GKHEERQ--DEHGFI--SREFQRKYRIPADVDPLTITSSLSPD   74 (84)
T ss_pred             eEeCCceEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEccee--CCCCEE--EEEEEEEEECCCCCChHHcEEEeCCC
Confidence            578899999999999 99999999999999 69999 9754322  233444  46899999999999999999999339


Q ss_pred             CEEEEEEecc
Q 040821          177 GVLTVTFTKL  186 (220)
Q Consensus       177 GVLtItlPK~  186 (220)
                      |||+|++||+
T Consensus        75 GvL~I~lPk~   84 (84)
T cd06498          75 GVLTVCGPRK   84 (84)
T ss_pred             CEEEEEEeCC
Confidence            9999999995

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=99.84  E-value=2.6e-20  Score=139.73  Aligned_cols=83  Identities=17%  Similarity=0.286  Sum_probs=71.8

Q ss_pred             eeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEec
Q 040821           95 VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMD  174 (220)
Q Consensus        95 vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~  174 (220)
                      .||+|+++.|.|.++|| ||+|++|+|.+.++ .|+|+ |+++.+. + ...+  ..++|+|+|.||++||.++|+|+|.
T Consensus         3 ~~i~e~~~~~~v~~dlP-G~~~edi~V~v~~~-~L~I~-g~~~~~~-~-~~~~--~~~~f~R~f~LP~~vd~~~v~A~~~   75 (86)
T cd06475           3 SEIRQTADRWKVSLDVN-HFAPEELVVKTKDG-VVEIT-GKHEEKQ-D-EHGF--VSRCFTRKYTLPPGVDPTAVTSSLS   75 (86)
T ss_pred             ceEEEcCCeEEEEEECC-CCCHHHEEEEEECC-EEEEE-EEECcCc-C-CCCE--EEEEEEEEEECCCCCCHHHcEEEEC
Confidence            58999999999999999 99999999999999 69999 9764322 1 2222  3569999999999999999999994


Q ss_pred             cCCEEEEEEe
Q 040821          175 DAGVLTVTFT  184 (220)
Q Consensus       175 ~dGVLtItlP  184 (220)
                      +||+|+|++|
T Consensus        76 ~dGvL~I~lP   85 (86)
T cd06475          76 PDGILTVEAP   85 (86)
T ss_pred             CCCeEEEEec
Confidence            4999999998

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=99.83  E-value=4.2e-20  Score=138.00  Aligned_cols=82  Identities=15%  Similarity=0.252  Sum_probs=69.4

Q ss_pred             EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821           97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA  176 (220)
Q Consensus        97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d  176 (220)
                      +..++++|.|.++|| ||+++||+|++.++ .|+|+ |++... . ....++  +++|+|+|.||++||+++|+|+|..|
T Consensus         2 ~~~~~d~y~v~~dlp-G~~~edi~V~v~~~-~L~I~-g~~~~~-~-~~~~~~--~~eF~R~~~LP~~vd~~~v~A~~~~d   74 (83)
T cd06476           2 VESEDDKYQVFLDVC-HFTPDEITVRTVDN-LLEVS-ARHPQR-M-DRHGFV--SREFTRTYILPMDVDPLLVRASLSHD   74 (83)
T ss_pred             eeccCCeEEEEEEcC-CCCHHHeEEEEECC-EEEEE-EEEcce-e-cCCCEE--EEEEEEEEECCCCCChhhEEEEecCC
Confidence            456789999999999 99999999999999 69999 976432 2 122233  56899999999999999999999449


Q ss_pred             CEEEEEEec
Q 040821          177 GVLTVTFTK  185 (220)
Q Consensus       177 GVLtItlPK  185 (220)
                      |+|+|++||
T Consensus        75 GvL~I~~Pr   83 (83)
T cd06476          75 GILCIQAPR   83 (83)
T ss_pred             CEEEEEecC
Confidence            999999997

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=99.81  E-value=1.5e-19  Score=136.44  Aligned_cols=81  Identities=10%  Similarity=0.114  Sum_probs=69.2

Q ss_pred             eCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEE
Q 040821          100 KKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVL  179 (220)
Q Consensus       100 ~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVL  179 (220)
                      +++.|+|.+||| ||+++||+|++.+| +|+|+ |+++.+.+++. ...+.+|+|.|+|.||++||.++|+|+|+++|||
T Consensus         6 ~~~~~~v~adlP-G~~kedI~V~v~~~-~L~I~-ger~~~~e~~~-~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l   81 (87)
T cd06482           6 DSSNVLASVDVC-GFEPDQVKVKVKDG-KVQVS-AERENRYDCLG-SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVV   81 (87)
T ss_pred             cCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEecccccCC-ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEE
Confidence            678999999999 99999999999999 69999 98765433222 2234589999999999999999999999955699


Q ss_pred             EEEEe
Q 040821          180 TVTFT  184 (220)
Q Consensus       180 tItlP  184 (220)
                      +|..|
T Consensus        82 ~i~~~   86 (87)
T cd06482          82 KIETP   86 (87)
T ss_pred             EEeeC
Confidence            99987

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=99.80  E-value=4.4e-19  Score=132.67  Aligned_cols=79  Identities=19%  Similarity=0.319  Sum_probs=68.1

Q ss_pred             EEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-ccC
Q 040821           98 KSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-DDA  176 (220)
Q Consensus        98 ~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~~d  176 (220)
                      -|++++|.|.++|| ||+|+||+|++.++ +|+|+ |++..+.+  ...+  ..++|+|+|.||++|+.++|+|+| + |
T Consensus         3 ~e~~~~~~v~~dlp-G~~~edI~V~v~~~-~L~I~-ge~~~~~~--~~~~--~~r~F~R~~~LP~~Vd~~~v~A~~~~-d   74 (83)
T cd06477           3 EEGKPMFQILLDVV-QFRPEDIIIQVFEG-WLLIK-GQHGVRMD--EHGF--ISRSFTRQYQLPDGVEHKDLSAMLCH-D   74 (83)
T ss_pred             ccCCceEEEEEEcC-CCCHHHeEEEEECC-EEEEE-EEEccccC--CCCE--EEEEEEEEEECCCCcchheEEEEEcC-C
Confidence            46889999999999 99999999999999 69999 98755332  2223  245999999999999999999998 7 9


Q ss_pred             CEEEEEEe
Q 040821          177 GVLTVTFT  184 (220)
Q Consensus       177 GVLtItlP  184 (220)
                      |||+|++|
T Consensus        75 GvL~I~~~   82 (83)
T cd06477          75 GILVVETK   82 (83)
T ss_pred             CEEEEEec
Confidence            99999986

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.79  E-value=3.8e-19  Score=131.61  Aligned_cols=77  Identities=25%  Similarity=0.446  Sum_probs=66.9

Q ss_pred             CCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC-CEE
Q 040821          101 KGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA-GVL  179 (220)
Q Consensus       101 ~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d-GVL  179 (220)
                      ++.|.|.++|| ||+++||+|+++++ .|+|+ |++....+    ...+.+++|.|+|.||++||+++|+|+|. | |+|
T Consensus         6 ~~~~~v~~dlp-G~~~edI~v~v~~~-~L~I~-g~~~~~~~----~~~~~~~~f~r~~~LP~~vd~~~i~A~~~-~~GvL   77 (83)
T cd06526           6 DEKFQVTLDVK-GFKPEELKVKVSDN-KLVVE-GKHEERED----EHGYVSREFTRRYQLPEGVDPDSVTSSLS-SDGVL   77 (83)
T ss_pred             CeeEEEEEECC-CCCHHHcEEEEECC-EEEEE-EEEeeecc----CCCEEEEEEEEEEECCCCCChHHeEEEeC-CCcEE
Confidence            36999999999 99999999999998 69999 98754322    11234789999999999999999999999 7 999


Q ss_pred             EEEEec
Q 040821          180 TVTFTK  185 (220)
Q Consensus       180 tItlPK  185 (220)
                      +|++||
T Consensus        78 ~I~~Pk   83 (83)
T cd06526          78 TIEAPK   83 (83)
T ss_pred             EEEecC
Confidence            999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=99.78  E-value=2.2e-18  Score=125.63  Aligned_cols=86  Identities=34%  Similarity=0.506  Sum_probs=73.2

Q ss_pred             eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEE--EEEeEEEEEEECCCCcccCceEEEe
Q 040821           96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLM--CVDGKNFRSFILPDGVNPNGFKTAM  173 (220)
Q Consensus        96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~--r~~g~F~R~~~LPe~Vd~e~I~A~~  173 (220)
                      ++.|+++.|.+.++|| |+++++|+|++.++ .|.|+ |++............  +.++.|.|+|.||.++|.++++|.|
T Consensus         1 ~i~e~~~~~~i~~~lp-g~~~~~i~V~v~~~-~l~I~-g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~   77 (88)
T cd06464           1 DVYETDDAYVVEADLP-GFKKEDIKVEVEDG-VLTIS-GEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL   77 (88)
T ss_pred             CcEEcCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE
Confidence            5789999999999999 99999999999998 69999 977644332221111  2289999999999999999999999


Q ss_pred             ccCCEEEEEEec
Q 040821          174 DDAGVLTVTFTK  185 (220)
Q Consensus       174 ~~dGVLtItlPK  185 (220)
                      + ||+|+|++||
T Consensus        78 ~-~G~L~I~~pk   88 (88)
T cd06464          78 E-NGVLTITLPK   88 (88)
T ss_pred             e-CCEEEEEEcC
Confidence            9 9999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2.3e-18  Score=144.81  Aligned_cols=108  Identities=20%  Similarity=0.320  Sum_probs=93.4

Q ss_pred             ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEE
Q 040821           93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTA  172 (220)
Q Consensus        93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~  172 (220)
                      ...++..++++|.|.+|+. .|+|++|+|++.++ +|.|+ |+ +.+   +.+.+..++++|.|+|.||++||+++|+++
T Consensus        63 ~~~~~~~~~~~F~V~lDV~-~F~PeEl~Vk~~~~-~l~V~-gk-Hee---r~d~~G~v~R~F~R~y~LP~~vdp~~V~S~  135 (173)
T KOG3591|consen   63 GASEIVNDKDKFEVNLDVH-QFKPEELKVKTDDN-TLEVE-GK-HEE---KEDEHGYVSRSFVRKYLLPEDVDPTSVTST  135 (173)
T ss_pred             cccccccCCCcEEEEEEcc-cCcccceEEEeCCC-EEEEE-ee-ecc---ccCCCCeEEEEEEEEecCCCCCChhheEEe
Confidence            4578899999999999999 99999999999999 79999 94 333   335566668899999999999999999999


Q ss_pred             eccCCEEEEEEeccCCCCCCeeEEeccCCCcchhh
Q 040821          173 MDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHA  207 (220)
Q Consensus       173 ~~~dGVLtItlPK~e~~k~r~i~I~I~~~~~~~~~  207 (220)
                      +.+||+|||++||.+......+.|+|+.++..+..
T Consensus       136 LS~dGvLtI~ap~~~~~~~~er~ipI~~~~~~~~~  170 (173)
T KOG3591|consen  136 LSSDGVLTIEAPKPPPKQDNERSIPIEQVGPSALS  170 (173)
T ss_pred             eCCCceEEEEccCCCCcCccceEEeEeecCccccc
Confidence            99999999999999876657888888888776643

>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=6.7e-18  Score=144.23  Aligned_cols=107  Identities=38%  Similarity=0.504  Sum_probs=93.9

Q ss_pred             CCCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccC--CCCeEEEE---EeEEEEEEECCCCc
Q 040821           90 LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEG--DTSTLMCV---DGKNFRSFILPDGV  164 (220)
Q Consensus        90 ~~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~--~~~~~~r~---~g~F~R~~~LPe~V  164 (220)
                      .+.+++++.|..++|.+.++|| |+++++++|+++++++|+|+ |++..+.++  ....++..   .|.|.|+|.||+++
T Consensus        82 ~~~~~~~v~e~~~~~~~~~~~P-gl~ke~iKv~~~~~~~l~is-Ge~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv  159 (196)
T KOG0710|consen   82 EARVPWDVKESPDAHEFKVDLP-GLKKEDIKVEVEDEKVLTIS-GERKKEEEESGSGKKWKRVERKLGKFKRRFELPENV  159 (196)
T ss_pred             cccCCcccccCCCceEEEeeCC-CCCchhceEEeccCcEEEEe-cccccccccccCCccceeehhcccceEeeecCCccc
Confidence            3567788999999999999999 99999999999998789999 998776554  33455544   99999999999999


Q ss_pred             ccCceEEEeccCCEEEEEEeccCC--CCCCeeEEecc
Q 040821          165 NPNGFKTAMDDAGVLTVTFTKLKP--EKKKLRPIAKK  199 (220)
Q Consensus       165 d~e~I~A~~~~dGVLtItlPK~e~--~k~r~i~I~I~  199 (220)
                      +.+.|+|.|+ ||||+|++||..+  +++++++|.|+
T Consensus       160 ~~d~ikA~~~-nGVL~VvvpK~~~~~~~~~v~~i~i~  195 (196)
T KOG0710|consen  160 DVDEIKAEME-NGVLTVVVPKLEPLLKKPKVRQIAIS  195 (196)
T ss_pred             cHHHHHHHhh-CCeEEEEEecccccccCCccceeecc
Confidence            9999999999 9999999999988  57888888875

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=99.70  E-value=9.1e-17  Score=122.22  Aligned_cols=82  Identities=12%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821           97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA  176 (220)
Q Consensus        97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d  176 (220)
                      +..+++.|.|.+|+. ||++|||+|++.++ .|+|+ |++.... ++ ..  ..+++|+|+|.||++||++.|+|+|.+|
T Consensus        10 ~~~~~~~f~v~ldv~-gF~pEDL~Vkv~~~-~L~V~-Gkh~~~~-~e-~g--~~~r~F~R~~~LP~~Vd~~~v~s~l~~d   82 (91)
T cd06480          10 PPNSSEPWKVCVNVH-SFKPEELTVKTKDG-FVEVS-GKHEEQQ-KE-GG--IVSKNFTKKIQLPPEVDPVTVFASLSPE   82 (91)
T ss_pred             CCCCCCcEEEEEEeC-CCCHHHcEEEEECC-EEEEE-EEECccc-CC-CC--EEEEEEEEEEECCCCCCchhEEEEeCCC
Confidence            345788999999999 99999999999999 69999 9654332 22 22  3368999999999999999999999889


Q ss_pred             CEEEEEEec
Q 040821          177 GVLTVTFTK  185 (220)
Q Consensus       177 GVLtItlPK  185 (220)
                      |+|+|++|.
T Consensus        83 GvL~IeaP~   91 (91)
T cd06480          83 GLLIIEAPQ   91 (91)
T ss_pred             CeEEEEcCC
Confidence            999999983

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.44  E-value=1.2e-12  Score=91.49  Aligned_cols=80  Identities=34%  Similarity=0.509  Sum_probs=68.9

Q ss_pred             EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821           97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA  176 (220)
Q Consensus        97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d  176 (220)
                      |+++++.|.|.+++| |+.+++++|.+.++ .|.|+ ++......     .....+.|.+++.||..+++++++|.|. +
T Consensus         1 ~~q~~~~v~i~i~~~-~~~~~~i~v~~~~~-~l~v~-~~~~~~~~-----~~~~~~~~~~~~~L~~~i~~~~~~~~~~-~   71 (80)
T cd00298           1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDN-VLTIS-GKREEEEE-----RERSYGEFERSFELPEDVDPEKSKASLE-N   71 (80)
T ss_pred             CEEcCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEcCCCc-----ceEeeeeEEEEEECCCCcCHHHCEEEEE-C
Confidence            578899999999999 99999999999998 59999 86533211     2223678999999999999999999999 9


Q ss_pred             CEEEEEEec
Q 040821          177 GVLTVTFTK  185 (220)
Q Consensus       177 GVLtItlPK  185 (220)
                      |+|+|++||
T Consensus        72 ~~l~i~l~K   80 (80)
T cd00298          72 GVLEITLPK   80 (80)
T ss_pred             CEEEEEEcC
Confidence            999999997

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.18  E-value=1.8e-10  Score=83.19  Aligned_cols=71  Identities=17%  Similarity=0.246  Sum_probs=64.6

Q ss_pred             EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821           97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA  176 (220)
Q Consensus        97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d  176 (220)
                      |+++++.+.|.+++| |+++++++|+++++ .|.|+ ++                 .|.+++.||..+++++.+|++. +
T Consensus         1 W~Qt~~~v~i~i~~p-~v~~~~v~v~~~~~-~l~i~-~~-----------------~~~~~~~l~~~I~~e~~~~~~~-~   59 (78)
T cd06469           1 WSQTDEDVKISVPLK-GVKTSKVDIFCSDL-YLKVN-FP-----------------PYLFELDLAAPIDDEKSSAKIG-N   59 (78)
T ss_pred             CcccCCEEEEEEEeC-CCccccceEEEecC-EEEEc-CC-----------------CEEEEEeCcccccccccEEEEe-C
Confidence            568899999999999 99999999999998 69998 61                 2678999999999999999999 9


Q ss_pred             CEEEEEEeccCC
Q 040821          177 GVLTVTFTKLKP  188 (220)
Q Consensus       177 GVLtItlPK~e~  188 (220)
                      |.|.|+|||.++
T Consensus        60 ~~l~i~L~K~~~   71 (78)
T cd06469          60 GVLVFTLVKKEP   71 (78)
T ss_pred             CEEEEEEEeCCC
Confidence            999999999764

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=98.84  E-value=4.4e-08  Score=82.78  Aligned_cols=80  Identities=20%  Similarity=0.362  Sum_probs=63.8

Q ss_pred             CCCceeeEEEeCC-EEEEEEEcCCCCCCCC-eEEEEECCc-EEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCccc
Q 040821           90 LEKVSVQWKSKKG-VFHFKAHLPAGTKMED-MMVGIEGRK-SLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNP  166 (220)
Q Consensus        90 ~~~p~vDi~E~~d-~~~l~~dLP~G~~ked-I~V~v~~~~-vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~  166 (220)
                      ...+.+++.+.++ .+.|.|||| |+++++ |+|.++.+. .|+|+ .         .+       .+.+++.||.. +.
T Consensus        89 ~~~~~vdtre~dDge~~VvAdLP-GVs~dd~idV~l~~d~~~L~i~-~---------~~-------~~~krv~L~~~-~~  149 (177)
T PF05455_consen   89 EESIHVDTRERDDGELVVVADLP-GVSDDDAIDVTLDDDEGALTIR-V---------GE-------KYLKRVALPWP-DP  149 (177)
T ss_pred             cceeeeeeEecCCCcEEEEEeCC-CCCcccceeeEeecCCceEEEe-c---------CC-------ceEeeEecCCC-cc
Confidence            3467889998777 699999999 999999 999999551 35555 2         11       24579999977 78


Q ss_pred             CceEEEeccCCEEEEEEeccCCC
Q 040821          167 NGFKTAMDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       167 e~I~A~~~~dGVLtItlPK~e~~  189 (220)
                      +..+|+|+ ||||+|++-+.++.
T Consensus       150 e~~~~t~n-NgILEIri~~~~~~  171 (177)
T PF05455_consen  150 EITSATFN-NGILEIRIRRTEES  171 (177)
T ss_pred             ceeeEEEe-CceEEEEEeecCCC
Confidence            89999999 99999999998754

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=98.80  E-value=3.9e-08  Score=70.26  Aligned_cols=76  Identities=16%  Similarity=0.206  Sum_probs=65.6

Q ss_pred             EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821           97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA  176 (220)
Q Consensus        97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d  176 (220)
                      |.++++.+.|.+.+| |..+++++|.+.++ .|+|+ +...     .+       +.|...+.|+..+++++..+++. +
T Consensus         1 W~Q~~~~v~i~v~~~-~~~~~~~~v~~~~~-~l~i~-~~~~-----~~-------~~~~~~~~L~~~I~~~~s~~~~~-~   64 (84)
T cd06463           1 WYQTLDEVTITIPLK-DVTKKDVKVEFTPK-SLTVS-VKGG-----GG-------KEYLLEGELFGPIDPEESKWTVE-D   64 (84)
T ss_pred             CcccccEEEEEEEcC-CCCccceEEEEecC-EEEEE-eeCC-----CC-------CceEEeeEccCccchhhcEEEEe-C
Confidence            467899999999999 99999999999998 59999 6321     11       24678899999999999999999 9


Q ss_pred             CEEEEEEeccCC
Q 040821          177 GVLTVTFTKLKP  188 (220)
Q Consensus       177 GVLtItlPK~e~  188 (220)
                      |.|+|+|+|.++
T Consensus        65 ~~l~i~L~K~~~   76 (84)
T cd06463          65 RKIEITLKKKEP   76 (84)
T ss_pred             CEEEEEEEECCC
Confidence            999999999875

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=98.44  E-value=8.5e-07  Score=64.46  Aligned_cols=77  Identities=17%  Similarity=0.214  Sum_probs=66.0

Q ss_pred             eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEecc
Q 040821           96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDD  175 (220)
Q Consensus        96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~  175 (220)
                      ||+++++.+.|.+.+| |+.++++.|.+.++ .|.|+ ....     ..       +.|...+.|+..|+++..++++. 
T Consensus         1 dW~Qt~~~v~i~v~~~-~~~~~~v~v~~~~~-~l~i~-~~~~-----~~-------~~~~~~~~L~~~I~~~~s~~~~~-   64 (84)
T cd06466           1 DWYQTDTSVTVTIYAK-NVDKEDVKVEFNEQ-SLSVS-IILP-----GG-------SEYQLELDLFGPIDPEQSKVSVL-   64 (84)
T ss_pred             CccccCCEEEEEEEEC-CCCHHHCEEEEecC-EEEEE-EECC-----CC-------CeEEEecccccccCchhcEEEEe-
Confidence            6899999999999999 99999999999998 59998 5321     11       13567889999999999999999 


Q ss_pred             CCEEEEEEeccCC
Q 040821          176 AGVLTVTFTKLKP  188 (220)
Q Consensus       176 dGVLtItlPK~e~  188 (220)
                      +|.|+|+|.|.++
T Consensus        65 ~~~vei~L~K~~~   77 (84)
T cd06466          65 PTKVEITLKKAEP   77 (84)
T ss_pred             CeEEEEEEEcCCC
Confidence            9999999999865

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=98.08  E-value=0.00012  Score=51.75  Aligned_cols=77  Identities=14%  Similarity=0.177  Sum_probs=62.1

Q ss_pred             ceeeEEEeCCEEEEEEEcCCC--CCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceE
Q 040821           93 VSVQWKSKKGVFHFKAHLPAG--TKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFK  170 (220)
Q Consensus        93 p~vDi~E~~d~~~l~~dLP~G--~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~  170 (220)
                      |+++|+++++...|.+.++ +  +++++++|.+.+. .|.++ ....     .+.       .|.-.+.|...++++...
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~-~~~~~~~dv~v~~~~~-~l~v~-~~~~-----~~~-------~~~~~~~L~~~I~~~~s~   65 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVK-PVDISKEDVKVDFTDT-SLSVS-IKSG-----DGK-------EYLLEGELFGEIDPDEST   65 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-T-TTTSSGGGEEEEEETT-EEEEE-EEET-----TSC-------EEEEEEEBSS-BECCCEE
T ss_pred             CCeEEEECCCEEEEEEEEc-CCCCChHHeEEEEEee-EEEEE-EEcc-----CCc-------eEEEEEEEeeeEcchhcE
Confidence            6789999999999999995 4  4599999999999 59999 5211     111       355678899999999999


Q ss_pred             EEeccCCEEEEEEec
Q 040821          171 TAMDDAGVLTVTFTK  185 (220)
Q Consensus       171 A~~~~dGVLtItlPK  185 (220)
                      .++. ++.|.|+|.|
T Consensus        66 ~~~~-~~~i~i~L~K   79 (79)
T PF04969_consen   66 WKVK-DNKIEITLKK   79 (79)
T ss_dssp             EEEE-TTEEEEEEEB
T ss_pred             EEEE-CCEEEEEEEC
Confidence            9999 8999999987

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=97.70  E-value=0.00072  Score=52.00  Aligned_cols=78  Identities=18%  Similarity=0.249  Sum_probs=65.0

Q ss_pred             ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEE
Q 040821           93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTA  172 (220)
Q Consensus        93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~  172 (220)
                      |+++|+++.+...|.+.+| |+  ++++|.+..+ .|.|+ +.. .   ..+.       .|.-.+.|...|++++.+.+
T Consensus         1 p~~~W~Qt~~~V~i~i~~~-~~--~~~~V~~~~~-~l~v~-~~~-~---~~~~-------~y~~~~~L~~~I~pe~s~~~   64 (108)
T cd06465           1 PPVLWAQRSDVVYLTIELP-DA--KDPKIKLEPT-SLSFK-AKG-G---GGGK-------KYEFDLEFYKEIDPEESKYK   64 (108)
T ss_pred             CceeeeECCCEEEEEEEeC-CC--CCcEEEEECC-EEEEE-EEc-C---CCCe-------eEEEEeEhhhhccccccEEE
Confidence            5789999999999999999 88  8899999999 59999 621 1   0111       24457789999999999999


Q ss_pred             eccCCEEEEEEeccC
Q 040821          173 MDDAGVLTVTFTKLK  187 (220)
Q Consensus       173 ~~~dGVLtItlPK~e  187 (220)
                      +. ++-|.|+|.|.+
T Consensus        65 v~-~~kveI~L~K~~   78 (108)
T cd06465          65 VT-GRQIEFVLRKKE   78 (108)
T ss_pred             ec-CCeEEEEEEECC
Confidence            99 899999999987

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=97.58  E-value=0.0004  Score=62.43  Aligned_cols=66  Identities=21%  Similarity=0.289  Sum_probs=55.6

Q ss_pred             CCEEEEEEEcCCCC-CCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEec-cCCE
Q 040821          101 KGVFHFKAHLPAGT-KMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMD-DAGV  178 (220)
Q Consensus       101 ~d~~~l~~dLP~G~-~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~-~dGV  178 (220)
                      .+.++|+++|| |+ +..+|.++|.+.+ |.|. ...        ..       |.-.+.||..||.+..+|+|. ..++
T Consensus       260 p~~lvv~i~LP-~~~s~~~i~LdV~~~~-l~l~-~~~--------~~-------y~L~l~LP~~V~~~~~~Akf~~~~~~  321 (328)
T PF08190_consen  260 PEELVVEIELP-GVESASDIDLDVSEDR-LSLS-SPK--------PK-------YRLDLPLPYPVDEDNGKAKFDKKTKT  321 (328)
T ss_pred             CceEEEEEECC-CcCccceeEEEEeCCE-EEEE-eCC--------Cc-------eEEEccCCCcccCCCceEEEccCCCE
Confidence            58899999999 99 8999999999995 9888 421        12       345799999999999999994 1489


Q ss_pred             EEEEEe
Q 040821          179 LTVTFT  184 (220)
Q Consensus       179 LtItlP  184 (220)
                      |+||||
T Consensus       322 L~vtlp  327 (328)
T PF08190_consen  322 LTVTLP  327 (328)
T ss_pred             EEEEEE
Confidence            999998

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=97.41  E-value=0.0017  Score=47.14  Aligned_cols=75  Identities=21%  Similarity=0.272  Sum_probs=61.0

Q ss_pred             eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEecc
Q 040821           96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDD  175 (220)
Q Consensus        96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~  175 (220)
                      .|+++++...|.+.+|.++.++|++|++.++ .|.|+ ...        +...       -.-.|...++++...-++. 
T Consensus         2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~-~~~--------~~~~-------l~~~L~~~I~~~~s~w~~~-   63 (85)
T cd06467           2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVG-VKG--------GEPL-------LDGELYAKVKVDESTWTLE-   63 (85)
T ss_pred             EEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEE-ECC--------CCce-------EcCcccCceeEcCCEEEEe-
Confidence            6899999999999998789999999999998 59999 521        1111       1235788999998888899 


Q ss_pred             C-CEEEEEEeccCC
Q 040821          176 A-GVLTVTFTKLKP  188 (220)
Q Consensus       176 d-GVLtItlPK~e~  188 (220)
                      + ..|.|+|+|.++
T Consensus        64 ~~~~v~i~L~K~~~   77 (85)
T cd06467          64 DGKLLEITLEKRNE   77 (85)
T ss_pred             CCCEEEEEEEECCC
Confidence            8 899999999875

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=97.40  E-value=0.0015  Score=47.81  Aligned_cols=77  Identities=16%  Similarity=0.194  Sum_probs=63.3

Q ss_pred             eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEecc
Q 040821           96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDD  175 (220)
Q Consensus        96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~  175 (220)
                      ||+++++...|.+.++ |+.++++.|++.++ .|.++ +...     .+..       |.-.+.|...+++++.+.+.. 
T Consensus         1 dW~Q~~~~V~iti~~k-~~~~~~~~v~~~~~-~l~~~-~~~~-----~~~~-------y~~~~~L~~~I~p~~s~~~v~-   64 (84)
T cd06489           1 DWYQTESQVVITILIK-NVKPEDVSVEFEKR-ELSAT-VKLP-----SGND-------YSLKLHLLHPIVPEQSSYKIL-   64 (84)
T ss_pred             CccccCCEEEEEEEEC-CCCHHHCEEEEeCC-EEEEE-EECC-----CCCc-------EEEeeecCceecchhcEEEEe-
Confidence            6889999999999999 99999999999998 59998 6321     1112       345678999999998888888 


Q ss_pred             CCEEEEEEeccCC
Q 040821          176 AGVLTVTFTKLKP  188 (220)
Q Consensus       176 dGVLtItlPK~e~  188 (220)
                      .+-+.|+|.|.+.
T Consensus        65 ~~kiei~L~K~~~   77 (84)
T cd06489          65 STKIEIKLKKTEA   77 (84)
T ss_pred             CcEEEEEEEcCCC
Confidence            7889999999764

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=97.02  E-value=0.012  Score=44.86  Aligned_cols=78  Identities=15%  Similarity=0.282  Sum_probs=61.8

Q ss_pred             CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821           92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT  171 (220)
Q Consensus        92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A  171 (220)
                      .+.+.|.++.+...|.+.||.|+++.|++|.+..++ |+|. - +       ++.  ...|      .|...|+++.-.=
T Consensus         5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~-l~V~-~-~-------g~~--~l~G------~L~~~I~~destW   66 (93)
T cd06494           5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRD-ISLA-V-K-------GQE--VLKG------KLFDSVVADECTW   66 (93)
T ss_pred             CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCE-EEEE-E-C-------CEE--EEcC------cccCccCcccCEE
Confidence            466899999999999999999999999999999995 9988 3 1       111  1123      4667888888777


Q ss_pred             EeccCC-EEEEEEeccCC
Q 040821          172 AMDDAG-VLTVTFTKLKP  188 (220)
Q Consensus       172 ~~~~dG-VLtItlPK~e~  188 (220)
                      +++ +| +|.|+|.|.+.
T Consensus        67 tle-d~k~l~I~L~K~~~   83 (93)
T cd06494          67 TLE-DRKLIRIVLTKSNR   83 (93)
T ss_pred             EEE-CCcEEEEEEEeCCC
Confidence            888 55 68999999763

Little is known about the function of the proteins in this subgroup.

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=96.98  E-value=0.013  Score=43.27  Aligned_cols=79  Identities=15%  Similarity=0.232  Sum_probs=62.9

Q ss_pred             eeeEEEeCCEEEEEEEcCCCCCC---CCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEE-ECCCCcccCce
Q 040821           94 SVQWKSKKGVFHFKAHLPAGTKM---EDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSF-ILPDGVNPNGF  169 (220)
Q Consensus        94 ~vDi~E~~d~~~l~~dLP~G~~k---edI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~-~LPe~Vd~e~I  169 (220)
                      ..+|+++++...|.+.+| +..+   ++++|++..+ .|.|+ + ...    ++..       |.-.+ .|-..+++++.
T Consensus         3 ~y~W~Qt~~~V~i~i~~~-~~~~~~~~~v~v~~~~~-~l~v~-~-~~~----~~~~-------~~~~~~~L~~~I~~e~s   67 (92)
T cd06468           3 KYAWDQSDKFVKIYITLK-GVHQLPKENIQVEFTER-SFELK-V-HDL----NGKN-------YRFTINRLLKKIDPEKS   67 (92)
T ss_pred             eeeeecCCCEEEEEEEcc-CCCcCCcccEEEEecCC-EEEEE-E-ECC----CCcE-------EEEEehHhhCccCcccc
Confidence            478999999999999999 8876   9999999998 59998 6 211    1222       22244 38889999999


Q ss_pred             EEEeccCCEEEEEEeccCC
Q 040821          170 KTAMDDAGVLTVTFTKLKP  188 (220)
Q Consensus       170 ~A~~~~dGVLtItlPK~e~  188 (220)
                      +..+. .+-+.|+|.|.++
T Consensus        68 ~~~~~-~~ki~i~L~K~~~   85 (92)
T cd06468          68 SFKVK-TDRIVITLAKKKE   85 (92)
T ss_pred             EEEEe-CCEEEEEEEeCCC
Confidence            99999 7889999999875

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=96.97  E-value=0.012  Score=43.60  Aligned_cols=80  Identities=11%  Similarity=0.065  Sum_probs=65.5

Q ss_pred             eeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe
Q 040821           94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM  173 (220)
Q Consensus        94 ~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~  173 (220)
                      +.||+++++...|.+-+. |+.++++.++++++ .|+++ ..-+     .++       .|.-.+.|-..++++..+-..
T Consensus         2 R~dW~Qs~~~V~ItI~~k-~~~~~~~~v~~~~~-~l~v~-~~~~-----~~~-------~y~~~l~L~~~I~~~~s~~~v   66 (87)
T cd06488           2 RHDWHQTGSHVVVSVYAK-NSNPELSVVEANST-VLTIH-IVFE-----GNK-------EFQLDIELWGVIDVEKSSVNM   66 (87)
T ss_pred             CccEeeCCCEEEEEEEEC-cCCccceEEEecCC-EEEEE-EECC-----CCc-------eEEEEeeccceEChhHcEEEe
Confidence            479999999999999999 99999999999987 58887 4221     111       245677899999999988888


Q ss_pred             ccCCEEEEEEeccCCC
Q 040821          174 DDAGVLTVTFTKLKPE  189 (220)
Q Consensus       174 ~~dGVLtItlPK~e~~  189 (220)
                      . .+-+.|+|.|.++.
T Consensus        67 ~-~~kvei~L~K~~~~   81 (87)
T cd06488          67 L-PTKVEIKLRKAEPG   81 (87)
T ss_pred             c-CcEEEEEEEeCCCC
Confidence            8 89999999998753

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=96.94  E-value=0.014  Score=42.96  Aligned_cols=76  Identities=14%  Similarity=0.181  Sum_probs=59.0

Q ss_pred             eeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEec
Q 040821           95 VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMD  174 (220)
Q Consensus        95 vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~  174 (220)
                      ++|+++.+...|.+.+|.|++++|++|++..++ |.+. . + .     +..       + -.-.|...++++.-.=.++
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~-l~v~-~-~-~-----~~~-------~-~~g~L~~~I~~d~Stw~i~   63 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDH-ISIA-L-K-D-----QAP-------L-LEGKLYSSIDHESSTWIIK   63 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEEecCE-EEEE-e-C-C-----CCe-------E-EeCcccCcccccCcEEEEe
Confidence            368999999999999965999999999999985 8888 4 1 0     011       1 1236788899998766777


Q ss_pred             cCC-EEEEEEeccCC
Q 040821          175 DAG-VLTVTFTKLKP  188 (220)
Q Consensus       175 ~dG-VLtItlPK~e~  188 (220)
                       +| .|.|+|.|.++
T Consensus        64 -~~~~l~i~L~K~~~   77 (85)
T cd06493          64 -ENKSLEVSLIKKDE   77 (85)
T ss_pred             -CCCEEEEEEEECCC
Confidence             66 79999999864

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=96.33  E-value=0.083  Score=41.07  Aligned_cols=79  Identities=20%  Similarity=0.313  Sum_probs=60.8

Q ss_pred             ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEE
Q 040821           93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTA  172 (220)
Q Consensus        93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~  172 (220)
                      |+++|+++.+...|++++| +  .+|++|+++++ .|+++ | ...    ++..|+       -.+.|=..|++++-+-+
T Consensus         2 p~v~WaQr~~~V~ltI~v~-d--~~d~~v~l~~~-~l~f~-~-~~~----~g~~y~-------~~l~l~~~I~pe~Sk~~   64 (106)
T cd00237           2 AKTLWYDRRDYVFIEFCVE-D--SKDVKVDFEKS-KLTFS-C-LNG----DNVKIY-------NEIELYDRVDPNDSKHK   64 (106)
T ss_pred             CcceeeECCCEEEEEEEeC-C--CCCcEEEEecC-EEEEE-E-ECC----CCcEEE-------EEEEeecccCcccCeEE
Confidence            6799999999999999999 8  58999999998 59999 7 221    222232       35677778898877777


Q ss_pred             eccCCEEEEEEeccCCC
Q 040821          173 MDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       173 ~~~dGVLtItlPK~e~~  189 (220)
                      .. .--+.|.|.|+++.
T Consensus        65 v~-~r~ve~~L~K~~~~   80 (106)
T cd00237          65 RT-DRSILCCLRKGKEG   80 (106)
T ss_pred             eC-CceEEEEEEeCCCC
Confidence            66 56788899998643

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.77  E-value=0.21  Score=46.02  Aligned_cols=81  Identities=14%  Similarity=0.141  Sum_probs=65.9

Q ss_pred             CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821           92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT  171 (220)
Q Consensus        92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A  171 (220)
                      .++.||+++++.+.|.+-+. |+.++++.|++.++ .|.|+ -..  .   .+..       |...+.|-..|++++.+.
T Consensus       156 ~~r~dWyQs~~~V~i~i~~k-~~~~~~~~v~~~~~-~l~v~-~~~--~---~~~~-------y~~~~~L~~~I~p~~s~~  220 (356)
T PLN03088        156 KYRHEFYQKPEEVVVTVFAK-GVPAENVNVDFGEQ-ILSVV-IEV--P---GEDA-------YHLQPRLFGKIIPDKCKY  220 (356)
T ss_pred             ccccceeecCCEEEEEEEec-CCChHHcEEEeecC-EEEEE-Eec--C---CCcc-------eeecccccccccccccEE
Confidence            47889999999999999999 99999999999998 59998 421  1   1112       334578889999999888


Q ss_pred             EeccCCEEEEEEeccCC
Q 040821          172 AMDDAGVLTVTFTKLKP  188 (220)
Q Consensus       172 ~~~~dGVLtItlPK~e~  188 (220)
                      +.. ---+.|+|.|.+.
T Consensus       221 ~v~-~~Kiei~l~K~~~  236 (356)
T PLN03088        221 EVL-STKIEIRLAKAEP  236 (356)
T ss_pred             EEe-cceEEEEEecCCC
Confidence            888 5688999999764

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=94.10  E-value=0.54  Score=35.09  Aligned_cols=75  Identities=23%  Similarity=0.366  Sum_probs=55.0

Q ss_pred             eEEEeCCEEEEEEEcCCC--CCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe
Q 040821           96 QWKSKKGVFHFKAHLPAG--TKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM  173 (220)
Q Consensus        96 Di~E~~d~~~l~~dLP~G--~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~  173 (220)
                      .|..+.+...|.+.||.|  +++.|++|.+..+ .|.|. - +       +.. ....|      .|...|+++.-.=.+
T Consensus         2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~-~-~-------g~~-~~i~G------~L~~~V~~des~Wtl   64 (87)
T cd06492           2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVG-L-K-------GQP-PIIDG------ELYNEVKVEESSWLI   64 (87)
T ss_pred             ccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEE-E-C-------CCc-eEEeC------cccCcccccccEEEE
Confidence            367788899999999755  8899999999999 48888 3 1       111 01123      356678888766678


Q ss_pred             ccCC-EEEEEEeccCC
Q 040821          174 DDAG-VLTVTFTKLKP  188 (220)
Q Consensus       174 ~~dG-VLtItlPK~e~  188 (220)
                      + +| .|.|+|-|...
T Consensus        65 e-d~~~l~i~L~K~~~   79 (87)
T cd06492          65 E-DGKVVTVNLEKINK   79 (87)
T ss_pred             e-CCCEEEEEEEECCC
Confidence            8 75 89999999854

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=94.05  E-value=0.21  Score=42.85  Aligned_cols=80  Identities=16%  Similarity=0.152  Sum_probs=56.9

Q ss_pred             CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821           92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT  171 (220)
Q Consensus        92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A  171 (220)
                      .++.||++++...+|.+-.+ ++.++|+.|++.++ +|.|. -  ..+   .++.|+       -...|-..|.+++.+-
T Consensus         3 k~r~DwyQt~~~vvIti~~k-~v~~~~v~v~~s~~-~l~~~-~--~~~---~g~~~~-------l~~~L~~~I~pe~~s~   67 (196)
T KOG1309|consen    3 KIRHDWYQTETSVVITIFAK-NVPKEDVNVEISEN-TLSIV-I--QLP---SGSEYN-------LQLKLYHEIIPEKSSF   67 (196)
T ss_pred             cccceeecCCceEEEEEEec-CCCccceeEEeecc-eEEEE-E--ecC---Cchhhh-------hhHHhcccccccceee
Confidence            46789999999999999999 99999999999988 68888 3  222   122222       2233555667776555


Q ss_pred             EeccCCEEEEEEeccC
Q 040821          172 AMDDAGVLTVTFTKLK  187 (220)
Q Consensus       172 ~~~~dGVLtItlPK~e  187 (220)
                      ..- ---++|+|+|.+
T Consensus        68 k~~-stKVEI~L~K~~   82 (196)
T KOG1309|consen   68 KVF-STKVEITLAKAE   82 (196)
T ss_pred             Eee-eeeEEEEecccc
Confidence            444 356678888854

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=93.81  E-value=1.4  Score=34.14  Aligned_cols=81  Identities=11%  Similarity=0.296  Sum_probs=59.1

Q ss_pred             CceeeEEEeCCEEEEEEEcCCCC-CCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceE
Q 040821           92 KVSVQWKSKKGVFHFKAHLPAGT-KMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFK  170 (220)
Q Consensus        92 ~p~vDi~E~~d~~~l~~dLP~G~-~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~  170 (220)
                      ...+.|..+-+...|.+.||.|. +..|+.|++...+ |.|. - +.    .+.+.. ...|      .|...|+.+.-.
T Consensus         4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~-l~v~-~-~~----~~~~~~-~i~G------~L~~~V~~des~   69 (102)
T cd06495           4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSS-IRVS-V-RD----GGGEKV-LMEG------EFTHKINTENSL   69 (102)
T ss_pred             CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCE-EEEE-E-ec----CCCCce-EEeC------cccCcccCccce
Confidence            35678999999999999999774 6899999999995 9888 3 10    001111 1233      466788888766


Q ss_pred             EEeccCC-EEEEEEeccC
Q 040821          171 TAMDDAG-VLTVTFTKLK  187 (220)
Q Consensus       171 A~~~~dG-VLtItlPK~e  187 (220)
                      =.++ || .|.|+|-|..
T Consensus        70 Wtle-d~~~l~I~L~K~~   86 (102)
T cd06495          70 WSLE-PGKCVLLSLSKCS   86 (102)
T ss_pred             EEEe-CCCEEEEEEEECC
Confidence            6788 75 5899999975

Little is known about the function of the proteins in this subgroup.

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=90.97  E-value=5.1  Score=29.66  Aligned_cols=78  Identities=13%  Similarity=0.149  Sum_probs=52.3

Q ss_pred             eeEEEeCCEEEEEEEcCCCCCCCCeE--EEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCc-eEE
Q 040821           95 VQWKSKKGVFHFKAHLPAGTKMEDMM--VGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNG-FKT  171 (220)
Q Consensus        95 vDi~E~~d~~~l~~dLP~G~~kedI~--V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~-I~A  171 (220)
                      .||+++++...|.+=.. +....+..  +....+ .|.|+ -  ..+    +.       .|...+.|=..++++. ++.
T Consensus         1 ~DWyQt~~~Vtitiy~K-~~~~~~~~v~v~~~~~-~l~v~-~--~~~----~~-------~~~~~~~L~~~I~~~~~~~~   64 (87)
T cd06490           1 YDWFQTDSEVTIVVYTK-SKGNPADIVIVDDQQR-ELRVE-I--ILG----DK-------SYLLHLDLSNEVQWPCEVRI   64 (87)
T ss_pred             CCceECCCEEEEEEEEc-ccCCCCccEEEECCCC-EEEEE-E--ECC----Cc-------eEEEeeeccccCCCCcEEEE
Confidence            38999999999999877 65544544  554555 58888 3  111    11       2456678888888774 443


Q ss_pred             EeccCCEEEEEEeccCCC
Q 040821          172 AMDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       172 ~~~~dGVLtItlPK~e~~  189 (220)
                      .-. -|-++|+|.|.++.
T Consensus        65 ~~~-~~KVEI~L~K~e~~   81 (87)
T cd06490          65 STE-TGKIELVLKKKEPE   81 (87)
T ss_pred             ccc-CceEEEEEEcCCCC
Confidence            333 47899999998753

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>PF14913 DPCD: DPCD protein family

Probab=80.96  E-value=16  Score=31.64  Aligned_cols=77  Identities=14%  Similarity=0.353  Sum_probs=59.6

Q ss_pred             CCceeeEEEeCCEEEEEE-EcCCCCCCCCeEEEEECC-cEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCC------
Q 040821           91 EKVSVQWKSKKGVFHFKA-HLPAGTKMEDMMVGIEGR-KSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPD------  162 (220)
Q Consensus        91 ~~p~vDi~E~~d~~~l~~-dLP~G~~kedI~V~v~~~-~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe------  162 (220)
                      ..|-+-=..+...|+-++ +||  ..++--+|.++++ +.++|+ ..        +.+       |.++|.+|+      
T Consensus        85 ~nP~~~r~dTk~~fqWRIRNLP--YP~dvYsVtvd~~~r~ivvR-Tt--------NKK-------YyKk~~IPDl~R~~l  146 (194)
T PF14913_consen   85 SNPIFVRRDTKTSFQWRIRNLP--YPKDVYSVTVDEDERCIVVR-TT--------NKK-------YYKKFSIPDLDRCGL  146 (194)
T ss_pred             CCCEEEEEcCccceEEEEccCC--CCccceEEEEcCCCcEEEEE-Cc--------Ccc-------ceeEecCCcHHhhCC
Confidence            355565678889999998 899  8899999999875 357777 31        223       557899997      


Q ss_pred             CcccCceEEEeccCCEEEEEEecc
Q 040821          163 GVNPNGFKTAMDDAGVLTVTFTKL  186 (220)
Q Consensus       163 ~Vd~e~I~A~~~~dGVLtItlPK~  186 (220)
                      ..+.+.++.... |..|.|+..|.
T Consensus       147 ~l~~~~ls~~h~-nNTLIIsYkKP  169 (194)
T PF14913_consen  147 PLEQSALSFAHQ-NNTLIISYKKP  169 (194)
T ss_pred             Ccchhhceeeee-cCeEEEEecCc
Confidence            347778888999 99999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	4e-10
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	9e-09
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	5e-08
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	1e-05
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	2e-07
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	3e-07
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	2e-06
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	4e-06
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 76  FEKLVPNHSETPSDLEKV---SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI- 131
           F  +VP  S   S+        + WK       FKA LP G K E++ V +E    L++ 
Sbjct: 24  FRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVS 82

Query: 132 GICDLSKTEEGDTSTLM-CVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEK 190
           G     K ++ D    +    GK  R F L +       K  +++ GVLTVT  K + +K
Sbjct: 83  GERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN-GVLTVTVPKAEVKK 141

Query: 191 KKLRPIA 197
            +++ I 
Sbjct: 142 PEVKAIQ 148

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 9/120 (7%)

Query: 76  FEKLVPNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICD 135
            +K     S    +L    V    + G     A L  G   E +   + G+  L+I    
Sbjct: 8   LQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLA-GFNKEKIKARVSGQNELII---- 62

Query: 136 LS---KTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKK 192
                +  E     L        +   LP  V  +   +   + GVLT+          K
Sbjct: 63  -EAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 51.4 bits (122), Expect = 5e-08
 Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 29/175 (16%)

Query: 36  KKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSETPSDLEKV-- 93
              +   +  + R    LP  ++ N  +A I  + +L +      PN+       EK   
Sbjct: 146 ACGDAAMSESVGR-SIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLA 204

Query: 94  --------------------SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGI 133
                                V  +      H +  +      +D+ V  +G K  + G+
Sbjct: 205 IQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGV 264

Query: 134 CDLSKTEEGDTSTLMCVDGKNF-RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLK 187
               +  E  + +      + F ++F+ P+ V+ +  +  + D G++ V     K
Sbjct: 265 TGKEEKTENASHSEH----REFYKAFVTPEVVDASKTQAEIVD-GLMVVEAPLFK 314

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 12/165 (7%)

Query: 48  RMEFNLPAGLNPNGFKAAIDD-EGLLTLTFEKLVPNHSETPSDLEKVSVQWKSKKGVFHF 106
            +    P     N F++ + +   +    F   +        D  K       K G  HF
Sbjct: 56  NLFSLEPFTAMDNAFESVMKEMSAIQPREFHPELEYTQPGELDFLK-DAYEVGKDGRLHF 114

Query: 107 KAHLPA-GTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNF-RSFILPDGV 164
           K +      K E++ +  +  K L++         +   S       ++  RS  LP  V
Sbjct: 115 KVYFNVKNFKAEEITIKADKNK-LVVRAQKSVACGDAAMS-------ESVGRSIPLPPSV 166

Query: 165 NPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAAC 209
           + N  +  +    VL +     +P  K ++   +K L        
Sbjct: 167 DRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQ 211

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 98  KSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRS 157
            +  G F     +      E++ V + G    +    +    E G  +          R 
Sbjct: 7   PTDPGYFSVLLDVK-HFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFH------RR 59

Query: 158 FILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKK 199
           + LP GV+P    +A+   GVL++  T    +     P A K
Sbjct: 60  YRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAAK 101

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 94  SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDTSTLMCV-- 150
            +            A LP G   ED+++   G  +L I          E +      +  
Sbjct: 58  PISIIEGDQHIKVIAWLP-GVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPE 115

Query: 151 DGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
           + + +R+  LP  V         ++ GVL+V   K +   KK   I
Sbjct: 116 EEEIYRTIKLPATVKEENASAKFEN-GVLSVILPKAESSIKKGINI 160

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 94  SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDTSTLM-CVD 151
            V  K +   F   A LP G     + V ++    L I G      + E +  + +    
Sbjct: 6   RVDIKEEVNHFVLYADLP-GIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRY 63

Query: 152 GKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTK 185
           G   R F LPD  + +G   A  + GVL +   K
Sbjct: 64  GSFHRRFALPDSADADGITAAGRN-GVLEIRIPK 96

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 98  KSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRS 157
           +S +  F     +      ED+ V ++     + G  +  + + G  S          R 
Sbjct: 8   RSDRDKFVIFLDVK-HFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFH------RR 60

Query: 158 FILPDGVNPNGFKTAMDDAGVLTVTFTKLK---PEKKKLRPI 196
           + LP  V+ +    ++   G+LT +  K+          R I
Sbjct: 61  YRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAI 102

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 81  PNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTE 140
           P+    PS  +    + + +K  F     +      E++ V + G    + G  +  + E
Sbjct: 52  PSFLRAPSWFDTGLSEMRLEKDRFSVNLDVK-HFSPEELKVKVLGDVIEVHGKHEERQDE 110

Query: 141 EGDTSTLMCVDGKNF-RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
            G  S       + F R + +P  V+P    +++   GVLTV   + K      R I
Sbjct: 111 HGFIS-------REFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR-KQVSGPERTI 159

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 29/249 (11%), Positives = 57/249 (22%), Gaps = 94/249 (37%)

Query: 1   MVGIDEDGKLLTIISKVASAHKDSSVITSSLFSF----LKKKEGDTTSQIIRMEFNLPAG 56
           ++G    GK  T +           V       F    L  K  ++   ++ M   L   
Sbjct: 158 VLGS---GK--TWV--ALDVCLSYKVQC--KMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 57  LNPNGFKAAIDDEGLLTLTFEKLVPNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKM 116
           ++PN               +     + S     +  +       + +   K +       
Sbjct: 209 IDPN---------------WTSRSDHSSNIKLRIHSIQ---AELRRLLKSKPY------- 243

Query: 117 EDMMVGIEGRKSLMI--GICDLSKTEEGDTSTLMCVDGKNFRSFIL--------PDGVNP 166
                       L++   + +               +  N    IL         D ++ 
Sbjct: 244 ---------ENCLLVLLNVQNAK-----------AWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 167 NGFK-TAMDD--------------AGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLL 211
                 ++D                  L      L  E     P           +   +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--------RRLS---I 332

Query: 212 ICEKISDGI 220
           I E I DG+
Sbjct: 333 IAESIRDGL 341

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	99.93
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	99.93
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	99.92
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	99.91
4fei_A	102	Heat shock protein-related protein; stress respons	99.9
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	99.9
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	99.9
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	99.88
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	99.87
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.85
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	99.85
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	99.8
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	98.88
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	98.84
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	97.76
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	97.72
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	97.36
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	97.2
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	97.14
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	97.13
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	97.02
3igf_A	374	ALL4481 protein; two-domained protein consisting o	97.02
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	96.81
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	96.76
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	96.65
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	96.05
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	95.78

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=99.93  E-value=2.6e-25  Score=168.00  Aligned_cols=95  Identities=24%  Similarity=0.322  Sum_probs=85.3

Q ss_pred             CCCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCccc
Q 040821           90 LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNP  166 (220)
Q Consensus        90 ~~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~  166 (220)
                      .+.|++||+|+++.|.|.++|| |++++||+|+++++ .|+|+ |+++.+.+++...|++.   +|.|.|+|.||.++|.
T Consensus         2 ~~~P~~di~e~~~~~~v~~~lP-G~~~edi~v~~~~~-~L~I~-g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~   78 (100)
T 3gla_A            2 QWVPRVDIKEEVNHFVLYADLP-GIDPSQIEVQMDKG-ILSIR-GERKSESSTETERFSRIERRYGSFHRRFALPDSADA   78 (100)
T ss_dssp             CSCCCEEEEECSSEEEEEEECT-TSCGGGCEEEEETT-EEEEE-EEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCT
T ss_pred             CccCcEEEEECCCEEEEEEECC-CCCHHHEEEEEECC-EEEEE-EEEcCcCccCCccEEEEeecceEEEEEEECCCCcCh
Confidence            3689999999999999999999 99999999999998 79999 98876655555677765   8999999999999999


Q ss_pred             CceEEEeccCCEEEEEEeccCC
Q 040821          167 NGFKTAMDDAGVLTVTFTKLKP  188 (220)
Q Consensus       167 e~I~A~~~~dGVLtItlPK~e~  188 (220)
                      ++|+|+|+ ||+|+|++||.++
T Consensus        79 ~~i~A~~~-~GvL~I~~pK~~~   99 (100)
T 3gla_A           79 DGITAAGR-NGVLEIRIPKRPA   99 (100)
T ss_dssp             TSCEEEEE-TTEEEEEEEBC--
T ss_pred             HHeEEEEe-CCEEEEEEecCCC
Confidence            99999999 9999999999864

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=99.93  E-value=1.1e-25  Score=183.15  Aligned_cols=107  Identities=29%  Similarity=0.470  Sum_probs=94.3

Q ss_pred             CCCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCccc
Q 040821           90 LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNP  166 (220)
Q Consensus        90 ~~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~  166 (220)
                      .+.|++||+|++++|+|.++|| |++++||+|++++++.|+|+ |+++.+.+++...|++.   +|.|.|+|.||++||.
T Consensus        41 ~~~p~~di~e~~d~~~v~~dlP-Gv~kedI~V~v~~~~~L~I~-g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~  118 (151)
T 1gme_A           41 FANARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVS-GERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKV  118 (151)
T ss_dssp             HGGGCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTTEEEEE-ECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCG
T ss_pred             ccCCceEEEEcCCEEEEEEECC-CCChHHEEEEEecCCEEEEE-EEEccccccCCceEEEEeEeccEEEEEEECCCCccc
Confidence            4679999999999999999999 99999999999644379999 98776555555677765   8999999999999999


Q ss_pred             CceEEEeccCCEEEEEEeccCCCCCCeeEEecc
Q 040821          167 NGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKK  199 (220)
Q Consensus       167 e~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~  199 (220)
                      ++|+|+|+ ||||+|++||.++++++.++|+|+
T Consensus       119 ~~i~A~~~-nGvL~I~lPK~~~~~~~~~~I~I~  150 (151)
T 1gme_A          119 EEVKAGLE-NGVLTVTVPKAEVKKPEVKAIQIS  150 (151)
T ss_dssp             GGCEEEEE-TTEEEEEEECCCCCTTCCCCCCCC
T ss_pred             cceEEEEE-CCEEEEEEEccCcCCCCCeEeeeC
Confidence            99999999 999999999998877777888875

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=99.92  E-value=3.6e-25  Score=181.22  Aligned_cols=100  Identities=22%  Similarity=0.322  Sum_probs=87.4

Q ss_pred             ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE----EeEEEEEEECCCCcccCc
Q 040821           93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV----DGKNFRSFILPDGVNPNG  168 (220)
Q Consensus        93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~----~g~F~R~~~LPe~Vd~e~  168 (220)
                      +++||+|++++|+|.++|| |++++||+|+++++ +|+|+ |+++.+.+.+..+|++.    +|.|.|+|.||.+||.++
T Consensus        57 ~pvdi~e~~~~~~v~~dlP-G~~~edi~V~~~~~-~L~I~-g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~  133 (161)
T 4eld_A           57 MPISIIEGDQHIKVIAWLP-GVNKEDIILNAVGD-TLEIR-AKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEEN  133 (161)
T ss_dssp             CCEEEEECSSEEEEEEECT-TCCGGGEEEEEETT-EEEEE-EECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGG
T ss_pred             cceeEEEeCCEEEEEEECC-CCChHhEEEEEECC-EEEEE-EEEcccccCCCceEEEEEeeccccEEEEEECCCCccccc
Confidence            4499999999999999999 99999999999999 79999 98766444445566654    489999999999999999


Q ss_pred             eEEEeccCCEEEEEEeccCCCCCCeeEE
Q 040821          169 FKTAMDDAGVLTVTFTKLKPEKKKLRPI  196 (220)
Q Consensus       169 I~A~~~~dGVLtItlPK~e~~k~r~i~I  196 (220)
                      |+|+|+ ||||+|++||.+.+++++|.|
T Consensus       134 i~A~~~-nGvL~I~lpK~~~~~~r~I~I  160 (161)
T 4eld_A          134 ASAKFE-NGVLSVILPKAESSIKKGINI  160 (161)
T ss_dssp             CEEEEE-TTEEEEEEEBCGGGSCCCCCC
T ss_pred             EEEEEE-CCEEEEEEEcCCCCCCcEeec
Confidence            999999 999999999998777666554

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=99.91  E-value=1.4e-24  Score=181.08  Aligned_cols=106  Identities=17%  Similarity=0.211  Sum_probs=71.8

Q ss_pred             ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEE
Q 040821           93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTA  172 (220)
Q Consensus        93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~  172 (220)
                      ..+||+|++++|+|.+||| ||+++||+|+++++ +|+|+ |+++.+.  ++..|+  +++|.|+|.||++||.++|+|+
T Consensus        64 ~~~dv~e~~d~~~v~~dlP-G~~~edI~V~v~~~-~L~I~-g~~~~~~--~~~~~~--~reF~R~~~LP~~Vd~~~i~A~  136 (175)
T 2klr_A           64 GLSEMRLEKDRFSVNLDVK-HFSPEELKVKVLGD-VIEVH-GKHEERQ--DEHGFI--SREFHRKYRIPADVDPLTITSS  136 (175)
T ss_dssp             -----CCCCSEEEEEECCS-SCCGGGEEEEEETT-EEEEE-EEEEEEE--ETTEEE--EEEEEEEEECTTTCCTTTCEEE
T ss_pred             CceEEEEcCCeEEEEEECC-CCChHHEEEEEECC-EEEEE-EEEcccc--cCCceE--EEEEEEEEECCCCcChhHeEEE
Confidence            3479999999999999999 99999999999999 79999 9765432  223444  3579999999999999999999


Q ss_pred             e-ccCCEEEEEEeccCCCCCCeeEEeccCCCcchhh
Q 040821          173 M-DDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHA  207 (220)
Q Consensus       173 ~-~~dGVLtItlPK~e~~k~r~i~I~I~~~~~~~~~  207 (220)
                      | + ||||+|++||.+.++ ..++|+|+.++.++.+
T Consensus       137 ~s~-dGvL~I~lPK~~~~~-~~r~I~I~~~~~~~~~  170 (175)
T 2klr_A          137 LSS-DGVLTVNGPRKQVSG-PERTIPITREEKPAVT  170 (175)
T ss_dssp             ECT-TSCEEEEEECC---------------------
T ss_pred             EcC-CCEEEEEEECCCCCC-CCeEEEEecCCccccc
Confidence            9 8 999999999987554 3467777777666543

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=99.90  E-value=1.3e-23  Score=159.99  Aligned_cols=91  Identities=23%  Similarity=0.441  Sum_probs=80.9

Q ss_pred             CCCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEE---EEeEEEEEEECCCCccc
Q 040821           90 LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMC---VDGKNFRSFILPDGVNP  166 (220)
Q Consensus        90 ~~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r---~~g~F~R~~~LPe~Vd~  166 (220)
                      .+.|++||+|+++.|.|.++|| |++++||+|+++++ .|+|+ |+++.+     ..|++   .+|.|.|+|.||.+||.
T Consensus         4 ~~~P~~di~e~~~~~~v~~~lP-G~~~edi~v~~~~~-~L~I~-g~~~~~-----~~~~~~er~~g~f~R~~~LP~~vd~   75 (102)
T 4fei_A            4 PWTPAADWRDAGTHLDLLLDVP-GVDAGTLALAEDGG-QLTVS-GERPGT-----EHLLRSERPSGRFVRELAFPEPVRP   75 (102)
T ss_dssp             ECCCCEEEEEETTEEEEEEECT-TCCGGGCEEEEETT-EEEEE-EEECCC-----SSCSSCCSEEEEEEEEEECSSCBCT
T ss_pred             cccCcEEEEEcCCEEEEEEECC-CCchHhEEEEEECC-EEEEE-EEEecC-----CCEEEEEEeccEEEEEEECCCCcch
Confidence            4689999999999999999999 99999999999999 79999 987431     23332   38999999999999999


Q ss_pred             CceEEEeccCCEEEEEEeccCCC
Q 040821          167 NGFKTAMDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       167 e~I~A~~~~dGVLtItlPK~e~~  189 (220)
                      ++|+|+|+ ||||+|++||.++.
T Consensus        76 ~~i~A~~~-~GvL~I~lpK~~~~   97 (102)
T 4fei_A           76 ASGVASLA-GGVLTVRFEKLRPT   97 (102)
T ss_dssp             TCCEEEEE-TTEEEEEEEBSSCC
T ss_pred             hHcEEEEE-CCEEEEEEEccCcc
Confidence            99999999 99999999998754

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=99.90  E-value=4.7e-23  Score=158.48  Aligned_cols=98  Identities=17%  Similarity=0.244  Sum_probs=82.8

Q ss_pred             eeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe
Q 040821           94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM  173 (220)
Q Consensus        94 ~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~  173 (220)
                      .+||+|+++.|.|.++|| ||+++||+|+++++ .|+|+ |++....  ....|+  +++|.|+|.||++||.++|+|+|
T Consensus         4 ~~~i~e~~~~~~v~~dlP-G~~~edi~V~v~~~-~L~I~-g~~~~~~--~~~~~~--~~eF~R~~~LP~~vd~~~i~A~~   76 (106)
T 3l1e_A            4 ISEVRSDRDKFVIFLDVK-HFSPEDLTVKVQED-FVEIH-GKHNERQ--DDHGYI--SREFHRRYRLPSNVDQSALSCSL   76 (106)
T ss_dssp             SEEEEECSSEEEEEEECT-TSCGGGEEEEEETT-EEEEE-EEEEEEE--TTTEEE--EEEEEEEEECCTTBCTTSCEEEE
T ss_pred             ceEEEEcCCEEEEEEECC-CCChHHEEEEEECC-EEEEE-EEEcccc--CCCCEE--EEEEEEEEECCCCcChhHcEEEE
Confidence            479999999999999999 99999999999998 69999 9764332  223444  45799999999999999999999


Q ss_pred             -ccCCEEEEEEeccCCCC---CCeeEEecc
Q 040821          174 -DDAGVLTVTFTKLKPEK---KKLRPIAKK  199 (220)
Q Consensus       174 -~~dGVLtItlPK~e~~k---~r~i~I~I~  199 (220)
                       + ||||+|++||.+++.   ++.+.|+|+
T Consensus        77 s~-~GvL~I~~PK~~~~~~~~~~~r~I~I~  105 (106)
T 3l1e_A           77 SA-DGMLTFSGPKIPSGVDAGHSERAIPVS  105 (106)
T ss_dssp             CT-TSEEEEEEEBCCCCTTTTSSSCCCCCC
T ss_pred             CC-CCEEEEEEEccCcccccCCCCeEeeec
Confidence             8 999999999998763   356667664

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=99.90  E-value=2.5e-23  Score=158.63  Aligned_cols=97  Identities=21%  Similarity=0.320  Sum_probs=81.9

Q ss_pred             eeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe
Q 040821           94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM  173 (220)
Q Consensus        94 ~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~  173 (220)
                      .+||+|+++.|.|.++|| ||+++||+|+++++ .|+|+ |+++.+.  .+..|++  ++|.|+|.||++||.++|+|+|
T Consensus         3 ~vdi~e~~~~~~v~~dlP-G~~~edI~V~v~~~-~L~I~-g~~~~~~--~~~~~~~--~eF~R~~~LP~~vd~~~i~A~~   75 (101)
T 2wj5_A            3 MAQVPTDPGYFSVLLDVK-HFSPEEISVKVVGD-HVEVH-ARHEERP--DEHGFIA--REFHRRYRLPPGVDPAAVTSAL   75 (101)
T ss_dssp             CCCCCCCSSCEEEEEECT-TSCGGGEEEEEETT-EEEEE-EEEEECS--STTCCEE--EEEEEEEECCTTBCTTCCEEEE
T ss_pred             cEEEEEeCCEEEEEEECC-CCcHHHeEEEEECC-EEEEE-EEEeccc--CCCCEEE--EEEEEEEECCCCcChhHCEEEE
Confidence            479999999999999999 99999999999999 69999 9875432  2234443  4699999999999999999999


Q ss_pred             -ccCCEEEEEEeccCCCCCCeeEEec
Q 040821          174 -DDAGVLTVTFTKLKPEKKKLRPIAK  198 (220)
Q Consensus       174 -~~dGVLtItlPK~e~~k~r~i~I~I  198 (220)
                       + ||+|+|++||.++++++.++|.+
T Consensus        76 s~-nGvL~I~lPK~~~~~~~~~~i~~  100 (101)
T 2wj5_A           76 SP-EGVLSIQATPASAQASLPSPPAA  100 (101)
T ss_dssp             CT-TSEEEEEECBCCCCCSSCC----
T ss_pred             CC-CCEEEEEEECCCcCCCCCCcccc
Confidence             8 99999999999988888877754

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=99.88  E-value=1.5e-22  Score=158.69  Aligned_cols=92  Identities=20%  Similarity=0.207  Sum_probs=81.4

Q ss_pred             CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEEC-CcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCccc
Q 040821           91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEG-RKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNP  166 (220)
Q Consensus        91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~-~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~  166 (220)
                      +.|++||+|+++.|.|.++|| |++++||+|++.+ + .|+|+ |+++.+.   +..|++.   + .|.|+|.||.++|.
T Consensus        23 ~~P~~di~e~~~~~~v~~~lP-G~~~edi~V~v~~~~-~L~I~-g~~~~~~---~~~~~~~Er~~-~f~R~~~LP~~vd~   95 (123)
T 3aab_A           23 VYPPVDMYEEGGYLVVVADLA-GFNKEKIKARVSGQN-ELIIE-AEREITE---PGVKYLTQRPK-YVRKVIRLPYNVAK   95 (123)
T ss_dssp             HCSCEEEEEETTEEEEEEECC-SCCGGGCEEEEETTT-EEEEE-EECCCCC---CSCEEEECSCS-EEEEEEECSSEECT
T ss_pred             CCCcEEEEEcCCEEEEEEECC-CCCHHHEEEEEeCCC-EEEEE-EEEeccC---CCeEEEEEEeE-EEEEEEECCCCcCc
Confidence            358899999999999999999 9999999999999 8 79999 9765432   4456655   6 99999999999999


Q ss_pred             Cce-EEEeccCCEEEEEEeccCCCC
Q 040821          167 NGF-KTAMDDAGVLTVTFTKLKPEK  190 (220)
Q Consensus       167 e~I-~A~~~~dGVLtItlPK~e~~k  190 (220)
                      ++| +|+|+ ||||+|++||.+..+
T Consensus        96 ~~i~~A~~~-~GvL~I~lPK~~~~~  119 (123)
T 3aab_A           96 DAEISGKYE-NGVLTIRIPIAGTSV  119 (123)
T ss_dssp             TCCCEEEEE-TTEEEEEEEGGGEEC
T ss_pred             chhCeeEEc-CCEEEEEEEcCCCCc
Confidence            999 99999 999999999987543

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=99.87  E-value=5.1e-22  Score=147.01  Aligned_cols=84  Identities=15%  Similarity=0.222  Sum_probs=69.7

Q ss_pred             EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821           97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA  176 (220)
Q Consensus        97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d  176 (220)
                      +.|+++.|.|.++|| ||+++||+|+++++ +|+|+ |+++.+.++  ..+  .+|+|.|+|.||++||+++|+|+|..|
T Consensus         2 ~~E~~~~~~v~~dlP-G~~~edi~V~v~~~-~L~I~-g~~~~~~~~--~~~--~~~~F~R~~~LP~~vd~~~i~A~~~~~   74 (85)
T 3q9p_A            2 GSHTADRWRVSLDVN-HFAPDELTVKTKDG-VVEIT-GKHAARQDE--HGY--ISRCFTRKYTLPPGVDPTQVSSSLSPE   74 (85)
T ss_dssp             -CCCCCEEEEEEECT-TTCCSEEEEEEETT-EEEEE-EEEC---------C--CCEEEEEEEECCTTCCGGGCEEEECTT
T ss_pred             ccCcCCEEEEEEECC-CCChHHEEEEEECC-EEEEE-EEEccccCC--CCE--EEEEEEEEEECCCCcChHHcEEEECCC
Confidence            468999999999999 99999999999999 79999 987543221  122  268999999999999999999999559


Q ss_pred             CEEEEEEeccC
Q 040821          177 GVLTVTFTKLK  187 (220)
Q Consensus       177 GVLtItlPK~e  187 (220)
                      |||+|++||.+
T Consensus        75 GvL~I~lPK~k   85 (85)
T 3q9p_A           75 GTLTVEAPMPK   85 (85)
T ss_dssp             SEEEEEEECCC
T ss_pred             CEEEEEEEcCC
Confidence            99999999963

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.85  E-value=4.7e-21  Score=172.81  Aligned_cols=105  Identities=17%  Similarity=0.141  Sum_probs=87.6

Q ss_pred             CCCceeeEEEeCC----EEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcc
Q 040821           90 LEKVSVQWKSKKG----VFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVN  165 (220)
Q Consensus        90 ~~~p~vDi~E~~d----~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd  165 (220)
                      .+.|++||+|+++    +|.|.++|| ||+++||+|+++++ +|+|+ |+++.+.+  ..   +.+|+|.|+|.||++||
T Consensus        96 ~~~p~vDi~E~~~dgk~~~~v~~dlP-G~~~edI~V~v~~~-~L~I~-ge~~~~~e--~~---r~~g~F~R~~~LP~~Vd  167 (314)
T 2bol_A           96 ELDFLKDAYEVGKDGRLHFKVYFNVK-NFKAEEITIKADKN-KLVVR-AQKSVACG--DA---AMSESVGRSIPLPPSVD  167 (314)
T ss_dssp             TTGGGGGCEEECTTSSEEEEEEEECT-TCCTTTEEEEEETT-EEEEE-ECCBSSTT--CC---CBCCCEEEEEECCTTBC
T ss_pred             cCCCccceEEcCCCCceEEEEEEECC-CCchHHeEEEEECC-EEEEE-EEEeccCC--CC---EEEEEEEEEEECCCCcc
Confidence            3679999999999    999999999 99999999999999 79999 98754322  11   44799999999999999


Q ss_pred             cCceEEEeccCCEEEEEEeccCCCCCCeeEEeccCCCcch
Q 040821          166 PNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLA  205 (220)
Q Consensus       166 ~e~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~~~~~~  205 (220)
                      .++|+|+|++||||+|++||.+++. +.  |+|+..+.++
T Consensus       168 ~e~i~A~~~~nGVL~I~lPK~~~~~-~~--I~it~~~ql~  204 (314)
T 2bol_A          168 RNHIQATITTDDVLVIEAPVNEPNY-KA--IKLSPEKGLA  204 (314)
T ss_dssp             GGGCEEEECSSSEEEEEEEBSSCCT-TT--EEEETTTEEE
T ss_pred             ccccEEEEeCCCEEEEEEeccCccc-ce--eecccCCccC
Confidence            9999999988999999999987653 33  4454444444

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=99.85  E-value=5.6e-21  Score=142.52  Aligned_cols=87  Identities=18%  Similarity=0.292  Sum_probs=68.2

Q ss_pred             EEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-ccC
Q 040821           98 KSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-DDA  176 (220)
Q Consensus        98 ~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~~d  176 (220)
                      .++++.|.|.++|| ||+++||+|++.++ .|+|+ |++..+.  .+..|++  +.|.|+|.||++||.++|+|+| + |
T Consensus         2 k~~~~~~~v~~dlP-G~~~edi~V~v~~~-~L~I~-g~~~~~~--~~~~~~~--~ef~R~~~LP~~vd~~~i~A~~~~-~   73 (90)
T 2y1y_A            2 AMEKDRFSVNLDVK-HFSPEELKVKVLGD-VIEVH-GKHEERQ--DEHGFIS--REFHRKYRIPADVDPLTITSSMSS-D   73 (90)
T ss_dssp             ----CCEEEEEECT-TSCGGGEEEEEETT-EEEEE-EEEEEEE--CSSSEEE--EEEEEEEECCTTBCGGGCEEEECT-T
T ss_pred             CcCCCEEEEEEECC-CCcHHHeEEEEECC-EEEEE-EEEeccc--CCCCEEE--EEEEEEEECCCCcChhHcEEEECC-C
Confidence            46889999999999 99999999999998 69999 9875432  2334553  4699999999999999999999 8 9


Q ss_pred             CEEEEEEeccCCCCCC
Q 040821          177 GVLTVTFTKLKPEKKK  192 (220)
Q Consensus       177 GVLtItlPK~e~~k~r  192 (220)
                      |||+|++||.++++|+
T Consensus        74 GvL~I~~pK~~~~~p~   89 (90)
T 2y1y_A           74 GVLTVNGPRKQVSGPE   89 (90)
T ss_dssp             SEEEEEECBC------
T ss_pred             CEEEEEEEcCCCCCCC
Confidence            9999999999877665

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=99.80  E-value=2.7e-19  Score=161.36  Aligned_cols=129  Identities=17%  Similarity=0.276  Sum_probs=97.0

Q ss_pred             hccCCCCCCccccccccCCCcchhhhccccCCCCC------------CCCCCC-------CCceeeEEEeC---CEEEEE
Q 040821           50 EFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHS------------ETPSDL-------EKVSVQWKSKK---GVFHFK  107 (220)
Q Consensus        50 ~f~~P~~~~~~~f~~~id~~g~l~~~fd~f~~~~~------------~~~~~~-------~~p~vDi~E~~---d~~~l~  107 (220)
                      .|.+|..++++...+.+..+|.|........+...            ...+..       -....+|.+++   +.|+|.
T Consensus       159 ~~~LP~~Vd~e~i~A~~~~nGVL~I~lPK~~~~~~~I~it~~~ql~Iqp~s~~q~~l~vkg~~~~~i~e~~~~~~~~~v~  238 (314)
T 2bol_A          159 SIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLE  238 (314)
T ss_dssp             EEECCTTBCGGGCEEEECSSSEEEEEEEBSSCCTTTEEEETTTEEEECCBCCSSCCSCCCSCCEEEEEECTTSCEEEEEE
T ss_pred             EEECCCCccccccEEEEeCCCEEEEEEeccCcccceeecccCCccCcCCCccccceeecccCCCCcEEEecCCCcEEEEE
Confidence            67899999999999999977999876543222110            000111       13456777765   578999


Q ss_pred             EEc-CCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccCceEEEeccCCEEEEEE
Q 040821          108 AHL-PAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTF  183 (220)
Q Consensus       108 ~dL-P~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItl  183 (220)
                      ++| | |++|+||+|++++| +|+|+ |+++.+.+    .+++.   +|+|.|+|.||++||.++|+|+|+ ||||+|++
T Consensus       239 ~~ldP-G~~~edi~V~v~~~-~LtI~-ge~~~~~~----~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~-dGvL~i~~  310 (314)
T 2bol_A          239 LKVDP-HFAPKDVKVWAKGN-KVYVH-GVTGKEEK----TENASHSEHREFYKAFVTPEVVDASKTQAEIV-DGLMVVEA  310 (314)
T ss_dssp             EECCT-TCCGGGEEEEESSS-EEEEE-EEEC----------------CEEEEEEEECSSEECGGGCEEEEE-TTEEEEEE
T ss_pred             EEcCC-CCChHHeEEEEECC-EEEEE-EEEeccCC----ceEEEEEeeeEEEEEEECCCCcChHHeEEEEe-CCEEEEEE
Confidence            999 9 99999999999998 79999 98765322    33433   999999999999999999999999 99999999


Q ss_pred             ecc
Q 040821          184 TKL  186 (220)
Q Consensus       184 PK~  186 (220)
                      ||.
T Consensus       311 Pk~  313 (314)
T 2bol_A          311 PLF  313 (314)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            996

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=98.88  E-value=9.5e-09  Score=75.24  Aligned_cols=82  Identities=10%  Similarity=0.087  Sum_probs=71.2

Q ss_pred             CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821           92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT  171 (220)
Q Consensus        92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A  171 (220)
                      .|+++|+++.+.+.|.+.+| |+.++++.|++.++ .|+|+ +...     .+       ..|...+.|+..|++++.++
T Consensus         2 ~~~~~W~Qt~~~V~v~i~~~-~v~~~~v~v~~~~~-~l~v~-~~~~-----~~-------~~y~~~~~L~~~I~~~~s~~   66 (92)
T 2xcm_C            2 KYRHEYYQKPEEVVVTVFAK-GIPKQNVNIDFGEQ-ILSVV-IEVP-----GE-------DAYYLQPRLFGKIIPDKCKY   66 (92)
T ss_dssp             CSEEEEEEETTEEEEEEECC-SCCGGGEEEEECSS-BEEEE-ECCT-----TS-------CCEEECCBBSSCBCGGGCEE
T ss_pred             CccccEEeCCCEEEEEEEEC-CCChHHeEEEEECC-EEEEE-EEcC-----CC-------cEEEEeeEcCCccCchhEEE
Confidence            57899999999999999999 99999999999999 59999 7321     11       13667899999999999999


Q ss_pred             EeccCCEEEEEEeccCCC
Q 040821          172 AMDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       172 ~~~~dGVLtItlPK~e~~  189 (220)
                      ++. +|.|+|+|+|.++.
T Consensus        67 ~~~-~~~l~i~L~K~~~~   83 (92)
T 2xcm_C           67 EVL-STKIEICLAKADII   83 (92)
T ss_dssp             EEC-SSCEEEEEEBSSSC
T ss_pred             EEE-CCEEEEEEEcCCCC
Confidence            999 99999999998754

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=98.84  E-value=1.3e-08  Score=77.70  Aligned_cols=83  Identities=11%  Similarity=0.129  Sum_probs=71.9

Q ss_pred             CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceE
Q 040821           91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFK  170 (220)
Q Consensus        91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~  170 (220)
                      ..|+++|+++.+.+.|.+.+| |+++++++|++.++ .|+|+ +...     .+.       .|...+.|+..|++++.+
T Consensus         8 ~~~~~~W~Qt~~~V~v~i~l~-~v~~~~v~v~~~~~-~l~v~-~~~~-----~~~-------~y~~~~~L~~~I~~e~s~   72 (114)
T 1rl1_A            8 SKIKYDWYQTESQVVITLMIK-NVQKNDVNVEFSEK-ELSAL-VKLP-----SGE-------DYNLKLELLHPIIPEQST   72 (114)
T ss_dssp             CCCCEEEEECSSEEEEEECCC-SCCGGGEEEECSSS-CEEEE-EECT-----TSS-------EEEEEECBSSCCCGGGEE
T ss_pred             CCCCccEEeCCCEEEEEEEeC-CCCHHHCEEEEEcC-EEEEE-EEeC-----CCc-------EEEEEeeCCCcCCccccE
Confidence            457799999999999999999 99999999999999 49999 7321     121       466889999999999999


Q ss_pred             EEeccCCEEEEEEeccCCC
Q 040821          171 TAMDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       171 A~~~~dGVLtItlPK~e~~  189 (220)
                      +++. +|.|+|+|+|.++.
T Consensus        73 ~~~~-~~~l~i~L~K~~~~   90 (114)
T 1rl1_A           73 FKVL-STKIEIKLKKPEAV   90 (114)
T ss_dssp             EEEC-SSSEEEEEECSSCC
T ss_pred             EEEE-CCEEEEEEEcCCCC
Confidence            9999 99999999998754

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=97.76  E-value=7.8e-05  Score=59.52  Aligned_cols=79  Identities=9%  Similarity=0.174  Sum_probs=66.9

Q ss_pred             CCceeeEEEeCCEEEEEEEcCCCCC--CCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCc-ccC
Q 040821           91 EKVSVQWKSKKGVFHFKAHLPAGTK--MEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGV-NPN  167 (220)
Q Consensus        91 ~~p~vDi~E~~d~~~l~~dLP~G~~--kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~V-d~e  167 (220)
                      ..|...+..+++..+|.+.+| ..+  ..++++.+++. .+... ..                 .|.-++.||..| +.+
T Consensus         2 iTP~F~itQd~e~viV~Ik~P-~~~~~~sdiei~v~~~-~F~F~-~~-----------------PYyLRL~LP~~V~e~~   61 (134)
T 2k8q_A            2 ITPRFSITQDEEFIFLKIFIS-NIRFSAVGLEIIIQEN-MIIFH-LS-----------------PYYLRLRFPHELIDDE   61 (134)
T ss_dssp             CCSEEEEEECSSEEEEEEECC-SSCCCSSSCCCEECSS-SEEEC-SS-----------------SSCEEECCSSCEECCS
T ss_pred             cCceEEEEECCCEEEEEEEcC-ccccCccccEEEEeCC-EEEEe-cC-----------------CeEEEecCCCeeecCC
Confidence            368899999999999999999 999  89999999988 58777 41                 133579999998 888


Q ss_pred             ceEEEec-cCCEEEEEEeccCCC
Q 040821          168 GFKTAMD-DAGVLTVTFTKLKPE  189 (220)
Q Consensus       168 ~I~A~~~-~dGVLtItlPK~e~~  189 (220)
                      .-+|+|. +.|.|+|++||..+.
T Consensus        62 ~~kA~YD~d~~~~~VtLpK~~~G   84 (134)
T 2k8q_A           62 RSTAQYDSKDECINVKVAKLNKN   84 (134)
T ss_dssp             SCEEEEETTTTEEEEEEEESSTT
T ss_pred             CcceeEeccCCEEEEEEeCCCCC
Confidence            8999996 389999999997543

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.00058  Score=53.11  Aligned_cols=81  Identities=9%  Similarity=0.183  Sum_probs=67.3

Q ss_pred             CCCCceeeEEEeCCEEEEEEEcCCCCC--CCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCc-c
Q 040821           89 DLEKVSVQWKSKKGVFHFKAHLPAGTK--MEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGV-N  165 (220)
Q Consensus        89 ~~~~p~vDi~E~~d~~~l~~dLP~G~~--kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~V-d  165 (220)
                      .+..|...+.++++...|.+-+| -++  ..++++.+++. .+... ..                 .|.-++.||..+ +
T Consensus        14 ~~iTP~F~itQDdefv~I~I~~p-~ir~~a~~~ei~vd~~-~F~F~-~~-----------------PYyLRL~lP~~vve   73 (115)
T 3eud_A           14 KMITPRFSITQDEEFIFLKIFIS-NIRFSAVGLEIIIQEN-MIIFH-LS-----------------PYYLRLRFPHELID   73 (115)
T ss_dssp             CCBCCCEEEEECSSEEEEEEECC-SCCCCSSSCEEEEETT-EEEEE-ET-----------------TEEEEEECSSCEEC
T ss_pred             CEeCCcEEEEECCCEEEEEEEcC-ceecccCccEEEEeCC-EEEEe-cC-----------------CeEEEEecCcceec
Confidence            35678999999999999999999 866  78999999988 57777 41                 245689999997 6


Q ss_pred             cCceEEEec-cCCEEEEEEeccCCC
Q 040821          166 PNGFKTAMD-DAGVLTVTFTKLKPE  189 (220)
Q Consensus       166 ~e~I~A~~~-~dGVLtItlPK~e~~  189 (220)
                      .+.-+|+|. ++|.++|++||..+.
T Consensus        74 d~~~~A~YD~d~g~~~v~lpK~~~G   98 (115)
T 3eud_A           74 DERSTAQYDSKDECINVKVAKLNKN   98 (115)
T ss_dssp             STTCEEEEETTTTEEEEEEEESSTT
T ss_pred             CCCcceEEeCCCcEEEEEEcCCcCC
Confidence            677889995 489999999998654

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.36  E-value=0.0043  Score=48.04  Aligned_cols=82  Identities=12%  Similarity=0.124  Sum_probs=67.3

Q ss_pred             CceeeEEEeCCEEEEEEEcCCCC---CCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEE-CCCCcccC
Q 040821           92 KVSVQWKSKKGVFHFKAHLPAGT---KMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFI-LPDGVNPN  167 (220)
Q Consensus        92 ~p~vDi~E~~d~~~l~~dLP~G~---~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~-LPe~Vd~e  167 (220)
                      .++++|+++.+...|.+.+| |+   .++++.|++..+ .|.+. ... .    .+..       |.-.+. |-..|+++
T Consensus        20 ~~~y~W~Qt~~~V~i~I~l~-~~~~~~~~~v~V~~~~~-~l~v~-~~~-~----~~~~-------y~~~~~~L~~~I~~e   84 (127)
T 1x5m_A           20 ISNYGWDQSDKFVKIYITLT-GVHQVPTENVQVHFTER-SFDLL-VKN-L----NGKS-------YSMIVNNLLKPISVE   84 (127)
T ss_dssp             CCSCEEEEETTEEEEEEECT-TTTTSCTTSEEEEECSS-EEEEE-ECS-C----SSSC-------EEEEEECBSSCCCTT
T ss_pred             ccEEEEEcCCCEEEEEEEeC-CCCcCCccccEEEEEcC-EEEEE-EEc-C----CCCc-------EEEEhHHhcCccCcc
Confidence            45789999999999999999 99   899999999998 59999 521 1    1122       445675 88999999


Q ss_pred             ceEEEeccCCEEEEEEeccCCC
Q 040821          168 GFKTAMDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       168 ~I~A~~~~dGVLtItlPK~e~~  189 (220)
                      +-+.+.. .+-++|+|-|.++.
T Consensus        85 ~S~~~v~-~~kVei~L~K~~~~  105 (127)
T 1x5m_A           85 GSSKKVK-TDTVLILCRKKVEN  105 (127)
T ss_dssp             TCEEEEE-TTEEEEEEECSSSS
T ss_pred             cCEEEEe-CCEEEEEEEECCCC
Confidence            9888998 89999999998753

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=97.20  E-value=0.0043  Score=49.07  Aligned_cols=89  Identities=9%  Similarity=0.011  Sum_probs=69.1

Q ss_pred             CceeeEEEe-CCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccc-----cCCCCeEEEEEeEEEEEEECCCCcc
Q 040821           92 KVSVQWKSK-KGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTE-----EGDTSTLMCVDGKNFRSFILPDGVN  165 (220)
Q Consensus        92 ~p~vDi~E~-~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~-----e~~~~~~~r~~g~F~R~~~LPe~Vd  165 (220)
                      .++++|+++ .+...|.+.++ ++.+++++|++.++ .|.+. .......     ......+     .|.-.+.|-..|+
T Consensus        19 ~~r~~W~Qt~~~~V~vtI~~k-~v~~~~v~V~f~~~-~l~v~-~~~~~~~~l~~~~a~g~~~-----~y~~~~~L~~~I~   90 (134)
T 1wh0_A           19 FVKNDSYEKGPDSVVVHVYVK-EICRDTSRVLFREQ-DFTLI-FQTRDGNFLRLHPGCGPHT-----TFRWQVKLRNLIE   90 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECC-SBCTTSCEEEECSS-EEEEE-ECBCCHHHHHHSTTCCTTS-----CEEEEEEBSSCEE
T ss_pred             CCCeEEEcCCCCEEEEEEEeC-CCCcccCEEEEECC-EEEEE-EEcCCCcccccccccCcce-----eEEEeccccccCC
Confidence            578999999 99999999999 99999999999998 59999 5221100     0000000     3556678999999


Q ss_pred             cCceEEEeccCCEEEEEEeccCCC
Q 040821          166 PNGFKTAMDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       166 ~e~I~A~~~~dGVLtItlPK~e~~  189 (220)
                      +++-+.++. ++-+.|+|.|++..
T Consensus        91 pe~S~~~v~-~~kIeI~L~K~e~~  113 (134)
T 1wh0_A           91 PEQCTFCFT-ASRIDICLRKRQSQ  113 (134)
T ss_dssp             EEEEEEEEC-SSEEEEEEEESSSC
T ss_pred             chhCEEEEe-CCEEEEEEEECCCC
Confidence            999888999 89999999998654

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=97.14  E-value=0.0042  Score=47.87  Aligned_cols=80  Identities=20%  Similarity=0.256  Sum_probs=65.2

Q ss_pred             CCceeeEEEeCCEEEEEEEcCCC--CCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCc
Q 040821           91 EKVSVQWKSKKGVFHFKAHLPAG--TKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNG  168 (220)
Q Consensus        91 ~~p~vDi~E~~d~~~l~~dLP~G--~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~  168 (220)
                      ..|.+.|.++.+...|.+.||.|  ++++|+.|++..++ |.|. . +.       ..+       .-...|...|+++.
T Consensus        15 ~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~-l~v~-~-kg-------~~~-------~~~g~L~~~I~~de   77 (121)
T 3qor_A           15 DLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRH-LRVG-L-KG-------QPA-------IIDGELYNEVKVEE   77 (121)
T ss_dssp             BCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTE-EEEE-E-TT-------SCC-------SEEEEBSSCBCGGG
T ss_pred             cCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCE-EEEE-E-cC-------cce-------EEeccccccccccc
Confidence            46789999999999999999956  79999999999994 9888 4 11       111       12457889999999


Q ss_pred             eEEEeccCC-EEEEEEeccCC
Q 040821          169 FKTAMDDAG-VLTVTFTKLKP  188 (220)
Q Consensus       169 I~A~~~~dG-VLtItlPK~e~  188 (220)
                      -.-.++ +| .|.|+|.|.+.
T Consensus        78 S~w~i~-~~~~i~i~L~K~~~   97 (121)
T 3qor_A           78 SSWLIA-DGAVVTVHLEKINK   97 (121)
T ss_dssp             CEEEEE-TTTEEEEEEEBSSS
T ss_pred             cEEEEc-CCCEEEEEEEECCC
Confidence            889999 87 99999999865

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=97.13  E-value=0.0053  Score=47.36  Aligned_cols=84  Identities=12%  Similarity=0.195  Sum_probs=66.9

Q ss_pred             CCceeeEEEeCCEEEEEEEcCCCC-CCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCce
Q 040821           91 EKVSVQWKSKKGVFHFKAHLPAGT-KMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGF  169 (220)
Q Consensus        91 ~~p~vDi~E~~d~~~l~~dLP~G~-~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I  169 (220)
                      ..|.+.|+++.+...|.+.||.|+ +++|+.|++..+ .|.|. ... .    .+..+       .-...|...|+++.-
T Consensus        18 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~-~l~v~-~~~-~----~~~~~-------~~~~~L~~~I~~e~S   83 (124)
T 1wgv_A           18 VRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSS-SIRVA-MLE-E----NGERV-------LMEGKLTHKINTESS   83 (124)
T ss_dssp             CCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSS-EEEEE-EEC-S----SSEEE-------EEEEEBSSCBCTTTC
T ss_pred             cCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcC-EEEEE-EEc-c----CCCce-------EEcccccCcCCCcCC
Confidence            457899999999999999999777 899999999999 49998 521 0    11111       235678999999998


Q ss_pred             EEEeccCCE-EEEEEeccCCC
Q 040821          170 KTAMDDAGV-LTVTFTKLKPE  189 (220)
Q Consensus       170 ~A~~~~dGV-LtItlPK~e~~  189 (220)
                      .-.++ +|- |.|+|.|.+..
T Consensus        84 ~w~i~-~~k~v~i~L~K~~~~  103 (124)
T 1wgv_A           84 LWSLE-PGKCVLVNLSKVGEY  103 (124)
T ss_dssp             EEEEC-TTSEEEEEECBSSSC
T ss_pred             EEEEe-CCCEEEEEEEECCCC
Confidence            89998 774 99999998653

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=97.02  E-value=0.0081  Score=46.78  Aligned_cols=78  Identities=10%  Similarity=0.191  Sum_probs=61.9

Q ss_pred             CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821           92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT  171 (220)
Q Consensus        92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A  171 (220)
                      .|.+.|+++.+...|.+.||.|++++++.|.+..+ .|.|. ..        +..+        -...|...|+++.-.-
T Consensus         4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~-~l~v~-~~--------g~~~--------~~~~L~~~I~~e~S~w   65 (131)
T 2o30_A            4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVGK-KICVK-NQ--------GEIV--------IDGELLHEVDVSSLWW   65 (131)
T ss_dssp             -CCCEEEEETTEEEEEEECC---CCSCEEEEEETT-EEEEE-ET--------TEEE--------EEEEBSSCEEEEEEEE
T ss_pred             CCcEEEEecCCEEEEEEECCCCCCccceEEEEECC-EEEEE-EC--------CEee--------EccccccccccccCEE
Confidence            57899999999999999997699999999999999 49998 51        1111        2467888999999888


Q ss_pred             EeccCCEEEEEEeccCC
Q 040821          172 AMDDAGVLTVTFTKLKP  188 (220)
Q Consensus       172 ~~~~dGVLtItlPK~e~  188 (220)
                      .+. +|-|.|+|-|.+.
T Consensus        66 ~i~-~~kv~i~L~K~~~   81 (131)
T 2o30_A           66 VIN-GDVVDVNVTKKRN   81 (131)
T ss_dssp             EEE-TTEEEEEEEESSC
T ss_pred             EEe-CCEEEEEEEECCC
Confidence            999 8889999999843

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=97.02  E-value=0.0012  Score=60.25  Aligned_cols=62  Identities=16%  Similarity=0.294  Sum_probs=53.1

Q ss_pred             EEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccC-ceEEEeccCCEEEE
Q 040821          103 VFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPN-GFKTAMDDAGVLTV  181 (220)
Q Consensus       103 ~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e-~I~A~~~~dGVLtI  181 (220)
                      .|.+.+.|| |+.+++|++...++ -|+|+ .                 |.|+|.+.||.....- -..|+|+ ||.|+|
T Consensus       306 ~~~~~l~lP-~~~~~~~~l~~~gd-eL~v~-~-----------------g~~rR~i~LP~~L~~~~v~~A~~~-~~~L~i  364 (374)
T 3igf_A          306 NRQVRLFLP-GFDKKQVKLTQYGP-EVTVE-A-----------------GDQRRNIFLPPALSGRPITGAKFQ-NNYLII  364 (374)
T ss_dssp             TTEEEEECT-TCCGGGCEEEEETT-EEEEE-E-----------------TTEEEEEECCTTTTTCCEEEEEEE-TTEEEE
T ss_pred             cEEEEEECC-CCCHHHeEEEEECC-eEEEE-E-----------------CCEeecccCCHHHcCCCccccEEE-CCEEEE
Confidence            899999999 99999999999998 59999 3                 2488999999986544 4578999 999999


Q ss_pred             EEec
Q 040821          182 TFTK  185 (220)
Q Consensus       182 tlPK  185 (220)
                      +.-.
T Consensus       365 ~~~~  368 (374)
T 3igf_A          365 SFLE  368 (374)
T ss_dssp             EECC
T ss_pred             EEeh
Confidence            8753

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=96.81  E-value=0.015  Score=45.12  Aligned_cols=80  Identities=19%  Similarity=0.273  Sum_probs=64.4

Q ss_pred             CCceeeEEEeCCEEEEEEEcCCC--CCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCc
Q 040821           91 EKVSVQWKSKKGVFHFKAHLPAG--TKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNG  168 (220)
Q Consensus        91 ~~p~vDi~E~~d~~~l~~dLP~G--~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~  168 (220)
                      ..|.+.|.++.+...|.+.||.|  ++++++.|++..+ .|.|. .. ..       .+.       -...|...|+++.
T Consensus         6 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~-~l~v~-~k-g~-------~~~-------~~~~L~~~I~~e~   68 (131)
T 1wfi_A            6 SGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRR-HLRVG-LK-GQ-------PPV-------VDGELYNEVKVEE   68 (131)
T ss_dssp             SCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETT-EEEEE-ET-TS-------CCS-------BCSCBSSCBCSTT
T ss_pred             CCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCC-EEEEE-EC-Cc-------eEE-------Eeccccccccccc
Confidence            45789999999999999999966  8999999999999 59998 41 11       000       1245778899999


Q ss_pred             eEEEeccCC-EEEEEEeccCC
Q 040821          169 FKTAMDDAG-VLTVTFTKLKP  188 (220)
Q Consensus       169 I~A~~~~dG-VLtItlPK~e~  188 (220)
                      -.-+++ +| .|.|+|-|.++
T Consensus        69 s~w~i~-~~k~v~i~L~K~~~   88 (131)
T 1wfi_A           69 SSWLIE-DGKVVTVHLEKINK   88 (131)
T ss_dssp             CEEEEE-TTTEEEEEEEBSSS
T ss_pred             CEEEEc-CCCEEEEEEEECCC
Confidence            888999 78 89999999875

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=96.76  E-value=0.012  Score=47.49  Aligned_cols=79  Identities=16%  Similarity=0.260  Sum_probs=65.8

Q ss_pred             CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceE
Q 040821           91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFK  170 (220)
Q Consensus        91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~  170 (220)
                      ..|.+.|.++.+...|.+.||.|++++++.|++..+ .|.|. ..        +..+        -...|...|+++.-.
T Consensus        12 ~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~-~L~v~-~k--------g~~~--------l~g~L~~~I~~eeS~   73 (157)
T 2rh0_A           12 GTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSR-HVALA-VG--------GREI--------LKGKLFDSTIADEGT   73 (157)
T ss_dssp             ECSSEEEEECSSEEEEEEECCTTCCGGGEEEEECSS-EEEEE-ET--------TEEE--------EEEEBSSCBCGGGCE
T ss_pred             CCCcEEEEecCCEEEEEEECCCCCcccceEEEEecC-EEEEE-EC--------CEEE--------EeeccccccCccccE
Confidence            457899999999999999998789999999999999 49998 51        1111        246788999999988


Q ss_pred             EEeccCC-EEEEEEeccCC
Q 040821          171 TAMDDAG-VLTVTFTKLKP  188 (220)
Q Consensus       171 A~~~~dG-VLtItlPK~e~  188 (220)
                      -+++ +| +|.|+|-|.+.
T Consensus        74 w~i~-~~k~v~I~L~K~~~   91 (157)
T 2rh0_A           74 WTLE-DRKMVRIVLTKTKR   91 (157)
T ss_dssp             EEEE-CCCEEEEEEEBSSC
T ss_pred             EEEc-CCcEEEEEEEEcCC
Confidence            9999 77 59999999875

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=96.65  E-value=0.013  Score=45.22  Aligned_cols=78  Identities=18%  Similarity=0.275  Sum_probs=64.3

Q ss_pred             eeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe
Q 040821           94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM  173 (220)
Q Consensus        94 ~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~  173 (220)
                      .++|+++.+...|.+.+| +.  ++++|++..+ .|.++ +.-..    ++.       .|.-.+.|-..|++++-+.+.
T Consensus         5 ~~~W~Qt~~~V~ltI~~~-~~--~~~~V~~~~~-~l~~~-~~~~~----~~~-------~y~~~l~L~~~I~~e~S~~~v   68 (125)
T 1ejf_A            5 SAKWYDRRDYVFIEFCVE-DS--KDVNVNFEKS-KLTFS-CLGGS----DNF-------KHLNEIDLFHCIDPNDSKHKR   68 (125)
T ss_dssp             CEEEEECSSEEEEEECCT-TE--EEEEEEEETT-EEEEE-EEETT----TTE-------EEEEEEEBSSCEEEEEEEEEE
T ss_pred             ceeEEeCCCEEEEEEEec-CC--CceEEEEECC-EEEEE-EEeCC----CCc-------eEEEEEEccceeccccCEEEE
Confidence            799999999999999999 85  7999999998 59999 73211    121       255678899999999999999


Q ss_pred             ccCCEEEEEEeccCC
Q 040821          174 DDAGVLTVTFTKLKP  188 (220)
Q Consensus       174 ~~dGVLtItlPK~e~  188 (220)
                      . ++-+.|+|.|+++
T Consensus        69 ~-~~kiei~L~K~~~   82 (125)
T 1ejf_A           69 T-DRSILCCLRKGES   82 (125)
T ss_dssp             C-SSCEEEEEEESST
T ss_pred             C-CCEEEEEEEECCC
Confidence            8 7889999999864

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0036  Score=49.25  Aligned_cols=86  Identities=8%  Similarity=0.067  Sum_probs=59.3

Q ss_pred             CCceeeEEEeCCE-------EEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCC
Q 040821           91 EKVSVQWKSKKGV-------FHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDG  163 (220)
Q Consensus        91 ~~p~vDi~E~~d~-------~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~  163 (220)
                      ..|.++|+++.+.       +.|.+.+| +++  +++|++..+ .|.++ +...........      ..|.-.+.|...
T Consensus         5 ~~p~~~W~Q~~~~~~~~k~~V~ltI~~~-~~~--~~~V~~~~~-~l~~~-~~~~~~~g~~~~------~~y~~~l~L~~~   73 (134)
T 2cg9_X            5 INPQVAWAQRSSTTDPERNYVLITVSIA-DCD--APELTIKPS-YIELK-AQSKPHVGDENV------HHYQLHIDLYKE   73 (134)
T ss_dssp             ------CBCCCEEECCCSSEEEEECCCS-SEE--SCCCCBCSS-EEEEC-CEEC-------C------EEBCEEEECSSC
T ss_pred             cCCCEEEEeCCCCcCCcCCEEEEEEEec-CCC--ceEEEEECC-EEEEE-EecccccCCccC------ceEEEEEEChhh
Confidence            4578899999877       99999999 874  888999888 59998 732110000001      135567899999


Q ss_pred             cccCceEEEeccCCE-EEEEEeccCC
Q 040821          164 VNPNGFKTAMDDAGV-LTVTFTKLKP  188 (220)
Q Consensus       164 Vd~e~I~A~~~~dGV-LtItlPK~e~  188 (220)
                      |++++.+.++. ++- +.|+|.|+++
T Consensus        74 Idpe~S~~~v~-~~~~vei~L~K~~~   98 (134)
T 2cg9_X           74 IIPEKTMHKVA-NGQHYFLKLYKKDL   98 (134)
T ss_dssp             CCSSSEEEEEC-CC--CEEEEEECSS
T ss_pred             ccccccEEEEC-CCEEEEEEEEECCC
Confidence            99999999999 787 9999999873

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=95.78  E-value=0.02  Score=45.94  Aligned_cols=80  Identities=13%  Similarity=0.167  Sum_probs=63.8

Q ss_pred             CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEE-CCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCce
Q 040821           91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIE-GRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGF  169 (220)
Q Consensus        91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~-~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I  169 (220)
                      ..|.++|+++.+.+.|.+.+| ++  ++++|++. .+ .|.++ +.  . .  .+.       .|.-.+.|=..|+++ -
T Consensus         3 ~~P~~~W~Qt~~~V~ltI~l~-~~--~~v~V~~~~~~-~l~~~-~~--~-~--~~~-------~y~~~l~L~~~Idpe-S   64 (150)
T 2kmw_A            3 RNPEVLWAQRSDKVYLTVALP-DA--KDISVKCEPQG-LFSFS-AL--G-A--QGE-------RFEFSLELYGKIMTE-Y   64 (150)
T ss_dssp             ECCCEEEEECSSEEEEEECCS-SE--EEEEECCCTTE-EEEEE-EE--T-T--TTE-------EEEEEEEBSSCEEEE-E
T ss_pred             cCCcEEEEeCCCEEEEEEEeC-CC--CceEEEEecCC-EEEEE-EE--c-C--CCc-------eEEEEeEhhhccccc-c
Confidence            358899999999999999999 97  57999998 66 59999 73  1 1  121       355678898999999 8


Q ss_pred             EEEeccCCEEEEEEeccCCC
Q 040821          170 KTAMDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       170 ~A~~~~dGVLtItlPK~e~~  189 (220)
                      +.+.. ..-+.|+|.|+++.
T Consensus        65 ~~~v~-~~kIei~L~K~e~~   83 (150)
T 2kmw_A           65 RKNVG-LRNIIFSIQKEERS   83 (150)
T ss_dssp             EEEEE-SSSEEEEEEECCSS
T ss_pred             eEEec-CCEEEEEEEECCCC
Confidence            88888 77899999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d1gmea_	150	b.15.1.1 (A:) Small heat shock protein {Wheat (Tri	3e-07
d1shsa_	115	b.15.1.1 (A:) Small heat shock protein {Archaeon M	3e-07

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 76  FEKLVPNHSETPSDLEKVS---VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132
           F  +VP  S   S+    +   + WK       FKA LP G K E++ V +E    L++ 
Sbjct: 23  FRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVS 81

Query: 133 ICDLSKTEE--GDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEK 190
                + E+       +    GK  R F L +       K  +++ GVLTVT  K + +K
Sbjct: 82  GERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN-GVLTVTVPKAEVKK 140

Query: 191 KKLRPI 196
            +++ I
Sbjct: 141 PEVKAI 146

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 45.4 bits (107), Expect = 3e-07
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 104 FHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVD---GKNFRSFIL 160
               A LP G   ED+++   G   L I               +        + +R+  L
Sbjct: 22  IKVIAWLP-GVNKEDIILNAVGDT-LEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKL 79

Query: 161 PDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
           P  V         ++ GVL+V   K +   KK   I
Sbjct: 80  PATVKEENASAKFEN-GVLSVILPKAESSIKKGINI 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	99.94
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	99.91
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	98.06
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	96.56
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	96.32
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	95.63
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	95.45

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.94  E-value=7e-27  Score=187.47  Aligned_cols=107  Identities=29%  Similarity=0.465  Sum_probs=95.8

Q ss_pred             CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccC
Q 040821           91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPN  167 (220)
Q Consensus        91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e  167 (220)
                      ..|++||+|++++|+|.++|| |++++||+|+++++++|+|+ |++..+.+.++..|+..   +|.|+|+|.||++||.+
T Consensus        41 ~~p~~dv~e~~~~~~i~~~lP-G~~~edi~v~v~~~~~l~i~-~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~  118 (150)
T d1gmea_          41 ANARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVS-GERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVE  118 (150)
T ss_dssp             GGGCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTTEEEEE-ECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGG
T ss_pred             CCCceeEEECCCEEEEEEEeC-CCccCCEEEEEEEccceeEE-EEEecccccccceeeeeeeccceEEEEEECCCCeeec
Confidence            468999999999999999999 99999999999987678999 98766655555666654   89999999999999999


Q ss_pred             ceEEEeccCCEEEEEEeccCCCCCCeeEEeccC
Q 040821          168 GFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKS  200 (220)
Q Consensus       168 ~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~  200 (220)
                      +|+|+|+ ||||+|++||.++++++.+.|+|++
T Consensus       119 ~i~A~~~-nGvL~I~lpK~~~~~~~~~~I~I~g  150 (150)
T d1gmea_         119 EVKAGLE-NGVLTVTVPKAEVKKPEVKAIQISG  150 (150)
T ss_dssp             GCEEEEE-TTEEEEEEECCCCCTTCCCCCCCCC
T ss_pred             eeEEEEE-CCEEEEEEEcCCcCCCCceEEeccC
Confidence            9999999 9999999999998888888898864

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.91  E-value=3.2e-24  Score=164.12  Aligned_cols=101  Identities=22%  Similarity=0.308  Sum_probs=85.8

Q ss_pred             CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE----EeEEEEEEECCCCcccC
Q 040821           92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV----DGKNFRSFILPDGVNPN  167 (220)
Q Consensus        92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~----~g~F~R~~~LPe~Vd~e  167 (220)
                      .|++||+|+++.|.|.++|| |++++||+|+++++ .|+|+ |++..........++..    +|.|+|+|.||.++|.+
T Consensus        10 ~~pvdi~e~~~~~~i~~~lP-G~~~edi~v~v~~~-~l~I~-~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~   86 (115)
T d1shsa_          10 FMPISIIEGDQHIKVIAWLP-GVNKEDIILNAVGD-TLEIR-AKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEE   86 (115)
T ss_dssp             CCCEEEEECSSEEEEEEECT-TCCGGGEEEEEETT-EEEEE-EECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGG
T ss_pred             cCceEEEEcCCEEEEEEECC-CCCHHHEEEEEECC-EEEEE-EEeccccccccccEEEEeeecccceEEEEecCCceeec
Confidence            46699999999999999999 99999999999999 69999 98765544444444332    79999999999999999


Q ss_pred             ceEEEeccCCEEEEEEeccCCCCCCeeEE
Q 040821          168 GFKTAMDDAGVLTVTFTKLKPEKKKLRPI  196 (220)
Q Consensus       168 ~I~A~~~~dGVLtItlPK~e~~k~r~i~I  196 (220)
                      +|+|+|+ ||+|+|++||.+..+++.+.|
T Consensus        87 ~i~A~~~-nGvL~I~lpK~~~~~~~~I~I  114 (115)
T d1shsa_          87 NASAKFE-NGVLSVILPKAESSIKKGINI  114 (115)
T ss_dssp             GCEEEEE-TTEEEEEEEBCGGGCCEECCC
T ss_pred             ceEEEEE-CCEEEEEEEeCCCCCCceeee
Confidence            9999999 999999999987665555443

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.4e-05  Score=56.63  Aligned_cols=82  Identities=11%  Similarity=0.130  Sum_probs=68.2

Q ss_pred             CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821           92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT  171 (220)
Q Consensus        92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A  171 (220)
                      .++.+|+++++...|.+.+| |+.++++.|++.+.. |.++ ... .    .+.       .|.-.+.|-..|++++.+.
T Consensus         2 k~ry~W~Qt~~~V~i~i~~~-~~~~~~v~v~~~~~~-l~v~-~~~-~----~~~-------~y~~~~~L~~~I~p~~s~~   66 (92)
T d1rl1a_           2 KIKYDWYQTESQVVITLMIK-NVQKNDVNVEFSEKE-LSAL-VKL-P----SGE-------DYNLKLELLHPIIPEQSTF   66 (92)
T ss_dssp             CCCEEEEECSSEEEEEECCC-SCCGGGEEEECSSSC-EEEE-EEC-T----TSS-------EEEEEECBSSCCCGGGEEE
T ss_pred             CCceeEEeCCCEEEEEEEeC-CCChHheEEEEecCE-EEEE-EEc-C----CCc-------EEEEEEEcCcccCchhcEE
Confidence            46789999999999999999 999999999999984 9888 421 1    122       2445778999999999999


Q ss_pred             EeccCCEEEEEEeccCCC
Q 040821          172 AMDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       172 ~~~~dGVLtItlPK~e~~  189 (220)
                      ++. ++-+.|+|.|+++.
T Consensus        67 ~~~-~~kiei~L~K~~~~   83 (92)
T d1rl1a_          67 KVL-STKIEIKLKKPEAV   83 (92)
T ss_dssp             EEC-SSSEEEEEECSSCC
T ss_pred             EEe-CCEEEEEEEECCCC
Confidence            999 89999999998654

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0084  Score=43.17  Aligned_cols=81  Identities=19%  Similarity=0.272  Sum_probs=63.9

Q ss_pred             CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821           92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT  171 (220)
Q Consensus        92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A  171 (220)
                      .|++.|+++.+...|.+.+| +.  .+++|.++.+. +.++ +....    .+.       .|.-.+.|-..|+++....
T Consensus         3 p~~~~W~Qt~~~V~i~I~v~-~~--~~~~v~i~~~~-l~~~-~~~~~----~~~-------~y~l~~~L~~~I~~~~s~~   66 (110)
T d1ejfa_           3 PASAKWYDRRDYVFIEFCVE-DS--KDVNVNFEKSK-LTFS-CLGGS----DNF-------KHLNEIDLFHCIDPNDSKH   66 (110)
T ss_dssp             CCCEEEEECSSEEEEEECCT-TE--EEEEEEEETTE-EEEE-EEETT----TTE-------EEEEEEEBSSCEEEEEEEE
T ss_pred             CCCcEEEECCCEEEEEEEeC-CC--CCceEEEEece-EEEE-EEecC----CCc-------eEEEEEEcccCcccCccEE
Confidence            35688999999999999999 85  57888888884 8888 63211    122       2445678999999999999


Q ss_pred             EeccCCEEEEEEeccCCC
Q 040821          172 AMDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       172 ~~~~dGVLtItlPK~e~~  189 (220)
                      ++. ++-+.|+|.|+++.
T Consensus        67 ~v~-~~kiei~L~K~~~~   83 (110)
T d1ejfa_          67 KRT-DRSILCCLRKGESG   83 (110)
T ss_dssp             EEC-SSCEEEEEEESSTT
T ss_pred             EEe-CCEEEEEEEEcCCC
Confidence            999 88999999998653

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0044  Score=47.12  Aligned_cols=90  Identities=9%  Similarity=0.021  Sum_probs=69.7

Q ss_pred             CceeeEEEeC-CEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeecc-----ccCCCCeEEEEEeEEEEEEECCCCcc
Q 040821           92 KVSVQWKSKK-GVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKT-----EEGDTSTLMCVDGKNFRSFILPDGVN  165 (220)
Q Consensus        92 ~p~vDi~E~~-d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e-----~e~~~~~~~r~~g~F~R~~~LPe~Vd  165 (220)
                      ..+-|||++. +...|.+-+. |+.+++++|++.++ .|+|+ -.....     +.....     ...|.-.+.|-..++
T Consensus        19 ~ir~dwyq~~~~~V~VtI~~K-~v~ke~~~V~f~~~-sl~v~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~~~I~   90 (134)
T d1wh0a_          19 FVKNDSYEKGPDSVVVHVYVK-EICRDTSRVLFREQ-DFTLI-FQTRDGNFLRLHPGCGP-----HTTFRWQVKLRNLIE   90 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECC-SBCTTSCEEEECSS-EEEEE-ECBCCHHHHHHSTTCCT-----TSCEEEEEEBSSCEE
T ss_pred             ccccceeecCCCEEEEEEEeC-CCchhheEEEEeCC-EEEEE-EECCCCcceeeccccCc-----CeeEEEeeecccccC
Confidence            4567999995 7999999999 99999999999998 69999 311000     000000     124777899999999


Q ss_pred             cCceEEEeccCCEEEEEEeccCCCC
Q 040821          166 PNGFKTAMDDAGVLTVTFTKLKPEK  190 (220)
Q Consensus       166 ~e~I~A~~~~dGVLtItlPK~e~~k  190 (220)
                      +++-+.+.. .+-+.|+|.|+++.+
T Consensus        91 pe~S~~~v~-~~kiei~L~K~~~~~  114 (134)
T d1wh0a_          91 PEQCTFCFT-ASRIDICLRKRQSQR  114 (134)
T ss_dssp             EEEEEEEEC-SSEEEEEEEESSSCC
T ss_pred             hhHcEEEeC-CCEEEEEEEeCCCCc
Confidence            999999999 899999999987654

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.086  Score=39.08  Aligned_cols=83  Identities=19%  Similarity=0.255  Sum_probs=60.6

Q ss_pred             CCCceeeEEEeCCEEEEEEEc--CCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccC
Q 040821           90 LEKVSVQWKSKKGVFHFKAHL--PAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPN  167 (220)
Q Consensus        90 ~~~p~vDi~E~~d~~~l~~dL--P~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e  167 (220)
                      ...|.+.|.++.+...|.+.+  |.|++++||.|++..++ |.|. -.. .      ..+.  .      -.|...|+++
T Consensus         5 ~~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~-l~v~-v~~-~------~~ll--~------g~L~~~I~~d   67 (131)
T d1wfia_           5 SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRH-LRVG-LKG-Q------PPVV--D------GELYNEVKVE   67 (131)
T ss_dssp             SSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTE-EEEE-ETT-S------CCSB--C------SCBSSCBCST
T ss_pred             CCCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCE-EEEE-EcC-C------ceee--c------ccccCccccc
Confidence            357889999999998888755  44789999999999994 9988 311 0      0110  1      1466788888


Q ss_pred             ceEEEeccCCEEEEEEeccCCC
Q 040821          168 GFKTAMDDAGVLTVTFTKLKPE  189 (220)
Q Consensus       168 ~I~A~~~~dGVLtItlPK~e~~  189 (220)
                      .-.=.++++++|.|+|.|....
T Consensus        68 es~W~ied~~~l~i~L~K~~~~   89 (131)
T d1wfia_          68 ESSWLIEDGKVVTVHLEKINKM   89 (131)
T ss_dssp             TCEEEEETTTEEEEEEEBSSSC
T ss_pred             ccEEEEeCCCEEEEEEEECCCC
Confidence            8777888345899999997543

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.11  Score=37.75  Aligned_cols=82  Identities=12%  Similarity=0.228  Sum_probs=60.3

Q ss_pred             CceeeEEEeCCEEEEEEEcCCCC-CCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceE
Q 040821           92 KVSVQWKSKKGVFHFKAHLPAGT-KMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFK  170 (220)
Q Consensus        92 ~p~vDi~E~~d~~~l~~dLP~G~-~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~  170 (220)
                      .+.+.|.++.+...|.+.||.|. +++||.|++... .|.|+ -  ...   ....       +.-...|...|+++.-.
T Consensus        19 ~~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~~-~l~v~-v--~~~---~~~~-------~~l~g~L~~~I~~deS~   84 (124)
T d1wgva_          19 RENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSS-SIRVA-M--LEE---NGER-------VLMEGKLTHKINTESSL   84 (124)
T ss_dssp             CSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSS-EEEEE-E--ECS---SSEE-------EEEEEEBSSCBCTTTCE
T ss_pred             CCCeEEEeECCEEEEEEEeCCCCcchhhEEEEEEeC-EEEEE-E--ecc---CCcc-------eEEeCcccCcccccccE
Confidence            45789999999999999999554 468999999998 48888 2  111   1111       22346799999999988


Q ss_pred             EEeccCC-EEEEEEeccCC
Q 040821          171 TAMDDAG-VLTVTFTKLKP  188 (220)
Q Consensus       171 A~~~~dG-VLtItlPK~e~  188 (220)
                      -.++ ++ +|.+.+.|.+.
T Consensus        85 w~i~-~~~~~i~~lkK~~~  102 (124)
T d1wgva_          85 WSLE-PGKCVLVNLSKVGE  102 (124)
T ss_dssp             EEEC-TTSEEEEEECBSSS
T ss_pred             EEEe-CCCEEEEEEEecCC
Confidence            8998 66 56666666554