Citrus Sinensis ID: 041063

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
NQLTLKPTLYIGRNRIQCLDFCKKRERGGKKKRHKREKSQLSKMEEPTEGASLVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDMERRPKPRIWNGEDYESDHDEDDKPPHMANFDDHMMRQ
cccccccccccccccccccHHHHHHcccccccccHHHHccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHcccHHHHHHHHccccccccccccHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHcccccEEEEcccccccccccccccccEEcHHHHHHHHHHHcccEEEEEEcccccccccHHHccccccEEEEEcccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHcccccccccccccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccc
cccccccEEEEccccHEHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHcHHcEEEEEccccccHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHccccccccccccHHHHHEEcccccHHHHHHHHcccccEEEEccccccccEccEcEccEcccHHHHHHHHHHHccccEEEEEccccccHHHHHHHcccccEEEEEEEEccccccccccccccccHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccEcccccccccEcHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccccEEccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccc
nqltlkptlyigrnRIQCLDFCKkrerggkkkrhkreksqlskmeeptegaslvsgpdgkkrrvsyfyeptigdyyygqghpmkphrIRMAHNLIVHYGLhrrmevnrpfpagpsdirrfhTDEYVEFLasvspessgdpsfsrhlkrfnvgedcpvfdgLFGFcqasaggsigAAVKlnrgdadiavnwagglhhakkseasgfcyvnDIVLGILELLKVHRRVLYVDidvhhgdgveeafyttdrvmtvsfhkfgdffpgtghikdvgagqgkfyalnvplndglddesfrgLFRPIIQKVMEVYQPDAVVLQCgadslsgdrlgcfnlsvkghADCLRFLRSFnvplmvlggggytirnvARCWCYETAVavgvepdnklpyneyyeyfgpdytlhvepcnmenlnaHKDMEKIRNTLLEQLSglihapsvpfqttpattqvpeepeedmerrpkpriwngedyesdhdeddkpphmanfddhmmrq
nqltlkptlyigrnriqcldfckkrerggkkkrhkreksqlskmeeptegaslvsgpdgkkrRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLAsvspessgdpsFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAvgvepdnklPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHapsvpfqttpattqvpeepeedmerrpkpriwngedyesdhdeddkpphmanfddhmmrq
NQLTLKPTLYIGRNRIQCLDFCkkrerggkkkrhkrekSQLSKMEEPTEGASLVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVpeepeedmerrpkprIWNGEDYESDHDEDDKPPHMANFDDHMMRQ
*****KPTLYIGRNRIQCLDFCK***************************************RVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLA**************HLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLI*************************************************************
******P*********************************************************SYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTP**************************************************
NQLTLKPTLYIGRNRIQCLDFCKKR********************************DGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLAS***********SRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTT*****************PKPRIWNGEDYESDHDEDDKPPHMANFDDHMMRQ
*QLTLKPTLYIGRNRIQCLDFCKKRER********************************KKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSV********************************************************
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NQLTLKPTLYIGRNRIQCLDFCKKRERGGKKKRHKREKSQLSKMEEPTEGASLVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDMERRPKPRIWNGEDYESDHDEDDKPPHMANFDDHMMRQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query490 2.2.26 [Sep-21-2011]
Q9FML2471 Histone deacetylase 6 OS= yes no 0.889 0.925 0.844 0.0
O22446501 Histone deacetylase 19 OS no no 0.830 0.812 0.715 1e-174
P56517480 Histone deacetylase 1 OS= yes no 0.775 0.791 0.662 1e-164
Q4QQW4482 Histone deacetylase 1 OS= yes no 0.785 0.798 0.648 1e-163
O09106482 Histone deacetylase 1 OS= yes no 0.785 0.798 0.648 1e-163
Q32PJ8482 Histone deacetylase 1 OS= yes no 0.785 0.798 0.648 1e-163
Q5RAG0482 Histone deacetylase 1 OS= yes no 0.785 0.798 0.645 1e-163
Q13547482 Histone deacetylase 1 OS= yes no 0.785 0.798 0.645 1e-163
O42227480 Probable histone deacetyl N/A no 0.775 0.791 0.643 1e-161
P56521513 Probable histone deacetyl N/A no 0.793 0.758 0.697 1e-161
>sp|Q9FML2|HDA6_ARATH Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1 Back     alignment and function desciption
 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/437 (84%), Positives = 400/437 (91%), Gaps = 1/437 (0%)

Query: 44  MEEPTEGASLVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRR 103
           ME    G SL SGPDG+KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAH+LI+HY LHRR
Sbjct: 1   MEADESGISLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRR 60

Query: 104 MEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFG 163
           +E++RP  A  SDI RFH+ EYV+FLASVSPES GDPS +R+L+RFNVGEDCPVFDGLF 
Sbjct: 61  LEISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFD 120

Query: 164 FCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHR 223
           FC+ASAGGSIGAAVKLNR DADIA+NW GGLHHAKKSEASGFCYVNDIVLGILELLK+ +
Sbjct: 121 FCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFK 180

Query: 224 RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPL 283
           RVLY+DIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHI+DVGA +GK+YALNVPL
Sbjct: 181 RVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPL 240

Query: 284 NDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 343
           NDG+DDESFR LFRP+IQKVMEVYQP+AVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL
Sbjct: 241 NDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 300

Query: 344 RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPC 403
           RS+NVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEY+EYFGPDYTLHV+P 
Sbjct: 301 RSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPS 360

Query: 404 NMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDMERRPKPRIWN 463
            MENLN  KDME+IRNTLLEQLSGLIHAPSV FQ TP   +V +EPE+DME RPKPRIW+
Sbjct: 361 PMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEDDMETRPKPRIWS 420

Query: 464 GE-DYESDHDEDDKPPH 479
           G   YESD D+DDKP H
Sbjct: 421 GTATYESDSDDDDKPLH 437
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Might remove acetyl residues only from specific targets, such as rDNA repeats or complex transgenes. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Required for rRNA gene silencing in nucleolar dominance. Plays a role in transgene silencing, but this effect seems to bee independent of the histone deacetylase activity.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2 Back     alignment and function description
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1 Back     alignment and function description
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1 Back     alignment and function description
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1 Back     alignment and function description
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1 SV=1 Back     alignment and function description
>sp|P56521|HDA19_MAIZE Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
224135913435 histone deacetylase [Populus trichocarpa 0.885 0.997 0.894 0.0
449440644465 PREDICTED: histone deacetylase 6-like [C 0.879 0.926 0.881 0.0
255540545468 histone deacetylase 1, 2 ,3, putative [R 0.897 0.940 0.862 0.0
356513715476 PREDICTED: histone deacetylase 6-like [G 0.893 0.920 0.845 0.0
356562692472 PREDICTED: histone deacetylase 6-like [G 0.906 0.940 0.835 0.0
297797301471 hypothetical protein ARALYDRAFT_496493 [ 0.889 0.925 0.851 0.0
359491241452 PREDICTED: histone deacetylase 6-like [V 0.861 0.933 0.852 0.0
224121742440 histone deacetylase [Populus trichocarpa 0.885 0.986 0.839 0.0
388516701459 unknown [Medicago truncatula] 0.871 0.930 0.855 0.0
15242626471 histone deacetylase 6 [Arabidopsis thali 0.889 0.925 0.844 0.0
>gi|224135913|ref|XP_002322192.1| histone deacetylase [Populus trichocarpa] gi|222869188|gb|EEF06319.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/435 (89%), Positives = 415/435 (95%), Gaps = 1/435 (0%)

Query: 44  MEEPTEGASLVS-GPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHR 102
           ME+ T GASL S G D KKRRV+YFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHY LHR
Sbjct: 1   MEDITGGASLPSTGTDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYALHR 60

Query: 103 RMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLF 162
           RME+NRPFPAGP+DIR+FH+DEYVEFL+SVSP+S GDP+F R LKRFNVGEDCPVFDGLF
Sbjct: 61  RMEINRPFPAGPTDIRKFHSDEYVEFLSSVSPQSVGDPAFGRQLKRFNVGEDCPVFDGLF 120

Query: 163 GFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVH 222
           GFCQASAGGSIGAAVKLNRGDADIA+NWAGGLHHAKKSEASGFCYVNDIVLGILELLKVH
Sbjct: 121 GFCQASAGGSIGAAVKLNRGDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVH 180

Query: 223 RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVP 282
           RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHK+GDFFPGTGHIKD GAGQGK YALN+P
Sbjct: 181 RRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGHIKDTGAGQGKSYALNIP 240

Query: 283 LNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF 342
           LNDG+DDE+FRGLFRP+IQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF
Sbjct: 241 LNDGMDDENFRGLFRPLIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF 300

Query: 343 LRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEP 402
           LRS+NVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEY+EYFGPDYTLHVEP
Sbjct: 301 LRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVEP 360

Query: 403 CNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVPEEPEEDMERRPKPRIW 462
            N+ENLN+ KDME+IRN LLEQLS L +APSVPFQTTP TT+VPEE EEDM++RPK RIW
Sbjct: 361 SNVENLNSPKDMERIRNILLEQLSRLPNAPSVPFQTTPPTTEVPEEAEEDMDQRPKRRIW 420

Query: 463 NGEDYESDHDEDDKP 477
           NGED+ESDHDED+KP
Sbjct: 421 NGEDFESDHDEDEKP 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449440644|ref|XP_004138094.1| PREDICTED: histone deacetylase 6-like [Cucumis sativus] gi|449523768|ref|XP_004168895.1| PREDICTED: histone deacetylase 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255540545|ref|XP_002511337.1| histone deacetylase 1, 2 ,3, putative [Ricinus communis] gi|223550452|gb|EEF51939.1| histone deacetylase 1, 2 ,3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356513715|ref|XP_003525556.1| PREDICTED: histone deacetylase 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356562692|ref|XP_003549603.1| PREDICTED: histone deacetylase 6-like [Glycine max] Back     alignment and taxonomy information
>gi|297797301|ref|XP_002866535.1| hypothetical protein ARALYDRAFT_496493 [Arabidopsis lyrata subsp. lyrata] gi|297312370|gb|EFH42794.1| hypothetical protein ARALYDRAFT_496493 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359491241|ref|XP_002281317.2| PREDICTED: histone deacetylase 6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121742|ref|XP_002318661.1| histone deacetylase [Populus trichocarpa] gi|222859334|gb|EEE96881.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388516701|gb|AFK46412.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|15242626|ref|NP_201116.1| histone deacetylase 6 [Arabidopsis thaliana] gi|75262723|sp|Q9FML2.1|HDA6_ARATH RecName: Full=Histone deacetylase 6 gi|10177292|dbj|BAB10553.1| histone deacetylase [Arabidopsis thaliana] gi|18176319|gb|AAL60022.1| putative histone deacetylase [Arabidopsis thaliana] gi|21593886|gb|AAM65853.1| histone deacetylase [Arabidopsis thaliana] gi|23296897|gb|AAN13198.1| putative histone deacetylase [Arabidopsis thaliana] gi|169883792|gb|ACA97992.1| histone deacetylase 6 [Arabidopsis thaliana] gi|169883794|gb|ACA97993.1| histone deacetylase 6 [Arabidopsis thaliana] gi|332010322|gb|AED97705.1| histone deacetylase 6 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
TAIR|locus:2162017471 HDA6 "histone deacetylase 6" [ 0.889 0.925 0.819 1.1e-199
TAIR|locus:2120948501 HD1 "AT4G38130" [Arabidopsis t 0.865 0.846 0.686 1.6e-166
UNIPROTKB|P56517480 HDAC1 "Histone deacetylase 1" 0.775 0.791 0.662 6.7e-152
UNIPROTKB|Q32PJ8482 HDAC1 "Histone deacetylase 1" 0.775 0.788 0.657 2.3e-151
UNIPROTKB|F1RZK8550 HDAC2 "Histone deacetylase" [S 0.816 0.727 0.644 2.3e-151
MGI|MGI:108086482 Hdac1 "histone deacetylase 1" 0.775 0.788 0.657 2.3e-151
RGD|619975482 Hdac1l "histone deacetylase 1- 0.775 0.788 0.657 2.3e-151
UNIPROTKB|Q13547482 HDAC1 "Histone deacetylase 1" 0.775 0.788 0.654 4.7e-151
UNIPROTKB|J3KPW7582 HDAC2 "Histone deacetylase 2" 0.793 0.668 0.657 6e-151
UNIPROTKB|F1NM39488 HDAC2 "Histone deacetylase" [G 0.775 0.778 0.670 9.8e-151
TAIR|locus:2162017 HDA6 "histone deacetylase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1933 (685.5 bits), Expect = 1.1e-199, P = 1.1e-199
 Identities = 358/437 (81%), Positives = 387/437 (88%)

Query:    44 MEEPTEGASLVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRR 103
             ME    G SL SGPDG+KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAH+LI+HY LHRR
Sbjct:     1 MEADESGISLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRR 60

Query:   104 MEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFG 163
             +E++RP  A  SDI RFH+ EYV+FLASVSPES GDPS +R+L+RFNVGEDCPVFDGLF 
Sbjct:    61 LEISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFD 120

Query:   164 FCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHR 223
             FC+ASAGGSIGAAVKLNR DADIA+NW GGLHHAKKSEASGFCYVNDIVLGILELLK+ +
Sbjct:   121 FCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFK 180

Query:   224 RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPL 283
             RVLY+DIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHI+DVGA +GK+YALNVPL
Sbjct:   181 RVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPL 240

Query:   284 NDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 343
             NDG+DDESFR LFRP+IQKVMEVYQP+AVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL
Sbjct:   241 NDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 300

Query:   344 RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPC 403
             RS+NVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEY+EYFGPDYTLHV+P 
Sbjct:   301 RSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPS 360

Query:   404 NMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVXXXXXXXXXXXXXXXIWN 463
              MENLN  KDME+IRNTLLEQLSGLIHAPSV FQ TP   +V               IW+
Sbjct:   361 PMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEDDMETRPKPRIWS 420

Query:   464 GE-DYESDHDEDDKPPH 479
             G   YESD D+DDKP H
Sbjct:   421 GTATYESDSDDDDKPLH 437
GO:0004407 "histone deacetylase activity" evidence=IEA;ISS;IMP
GO:0005634 "nucleus" evidence=ISM;ISS;IDA
GO:0016575 "histone deacetylation" evidence=IEA;ISS;IMP
GO:0005515 "protein binding" evidence=IPI
GO:0016441 "posttranscriptional gene silencing" evidence=IMP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009651 "response to salt stress" evidence=IMP
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0010431 "seed maturation" evidence=IMP
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016458 "gene silencing" evidence=IMP
TAIR|locus:2120948 HD1 "AT4G38130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P56517 HDAC1 "Histone deacetylase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PJ8 HDAC1 "Histone deacetylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RZK8 HDAC2 "Histone deacetylase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:108086 Hdac1 "histone deacetylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619975 Hdac1l "histone deacetylase 1-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q13547 HDAC1 "Histone deacetylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KPW7 HDAC2 "Histone deacetylase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NM39 HDAC2 "Histone deacetylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94517HDAC1_DROME3, ., 5, ., 1, ., 9, 80.65520.77140.7255yesno
Q6IRL9HDAC3_XENLA3, ., 5, ., 1, ., 9, 80.55420.83260.9532N/Ano
O17695HDA1_CAEEL3, ., 5, ., 1, ., 9, 80.61210.82040.8720yesno
O59702CLR6_SCHPO3, ., 5, ., 1, ., 9, 80.61410.77340.9358yesno
O22446HDA19_ARATH3, ., 5, ., 1, ., 9, 80.71530.83060.8123nono
Q13547HDAC1_HUMAN3, ., 5, ., 1, ., 9, 80.64590.78570.7987yesno
Q4QQW4HDAC1_RAT3, ., 5, ., 1, ., 9, 80.64850.78570.7987yesno
O09106HDAC1_MOUSE3, ., 5, ., 1, ., 9, 80.64850.78570.7987yesno
Q5RAG0HDAC1_PONAB3, ., 5, ., 1, ., 9, 80.64590.78570.7987yesno
Q9FML2HDA6_ARATH3, ., 5, ., 1, ., 9, 80.84430.88970.9256yesno
Q4SFA0HDAC3_TETNG3, ., 5, ., 1, ., 9, 80.55580.83460.9556N/Ano
Q32PJ8HDAC1_BOVIN3, ., 5, ., 1, ., 9, 80.64850.78570.7987yesno
P32561RPD3_YEAST3, ., 5, ., 1, ., 9, 80.61220.79590.9006yesno
P56517HDAC1_CHICK3, ., 5, ., 1, ., 9, 80.66230.77550.7916yesno
Q55FN5HDA11_DICDI3, ., 5, ., 1, ., 9, 80.62790.76930.7616yesno
P56518HDAC1_STRPU3, ., 5, ., 1, ., 9, 80.62030.81830.6961yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.979
3rd Layer3.5.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
HDA908
histone deacetylase (435 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 0.0
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 0.0
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 0.0
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 0.0
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 0.0
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 0.0
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 1e-161
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 1e-139
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 1e-110
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 1e-109
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 1e-107
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 1e-99
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 2e-95
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 2e-93
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 2e-51
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 1e-44
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 5e-44
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 2e-43
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 5e-34
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 5e-30
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 6e-29
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 2e-28
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 2e-28
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 4e-27
cd10006409 cd10006, HDAC4, Histone deacetylase 4 1e-24
cd10008378 cd10008, HDAC7, Histone deacetylase 7 2e-24
cd10007420 cd10007, HDAC5, Histone deacetylase 5 3e-24
cd10009379 cd10009, HDAC9, Histone deacetylase 9 5e-24
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1e-20
cd11683337 cd11683, HDAC10, Histone deacetylase 10 2e-15
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 3e-07
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information 
 Score =  613 bits (1584), Expect = 0.0
 Identities = 221/308 (71%), Positives = 270/308 (87%), Gaps = 2/308 (0%)

Query: 67  FYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYV 126
           FY+P +G+YYYGQGHPMKPHRIRM H+LI+ YGL+++ME+ RP PA   ++ +FH+D+Y+
Sbjct: 1   FYDPDVGNYYYGQGHPMKPHRIRMTHSLILSYGLYKKMEIYRPRPATAEELTKFHSDDYI 60

Query: 127 EFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADI 186
           +FL SVSP++     F + L+RFNVGEDCPVFDGL+ +CQ  AGGSI AAVKLNRG ADI
Sbjct: 61  DFLRSVSPDN--MKEFKKQLERFNVGEDCPVFDGLYEYCQLYAGGSIAAAVKLNRGQADI 118

Query: 187 AVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTD 246
           A+NWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGVEEAFYTTD
Sbjct: 119 AINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTD 178

Query: 247 RVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVMEV 306
           RVMTVSFHKFG++F     ++D+GAG+GK+YA+NVPL DG+DDES+  +F P++ KVMEV
Sbjct: 179 RVMTVSFHKFGEYFFPGTGLRDIGAGKGKYYAVNVPLKDGIDDESYLQIFEPVLSKVMEV 238

Query: 307 YQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARC 366
           +QP AVVLQCGADSL+GDRLGCFNLS+KGHA C++F++SFN+PL+VLGGGGYT+RNVARC
Sbjct: 239 FQPSAVVLQCGADSLAGDRLGCFNLSIKGHAKCVKFVKSFNIPLLVLGGGGYTLRNVARC 298

Query: 367 WCYETAVA 374
           W YETAV 
Sbjct: 299 WTYETAVL 306

Class I histone deacetylases (HDACs) are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues in histone amino termini to yield a deacetylated histone (EC 3.5.1.98). Enzymes belonging to this group participate in regulation of a number of processes through protein (mostly different histones) modification (deacetylation). Class I histone deacetylases in general act via the formation of large multiprotein complexes. This group includes animal HDAC1, HDAC2, HDAC3, HDAC8, fungal RPD3, HOS1 and HOS2, plant HDA9, protist, archaeal and bacterial (AcuC) deacetylases. Members of this class are involved in cell cycle regulation, DNA damage response, embryonic development, cytokine signaling important for immune response and in posttranslational control of the acetyl coenzyme A synthetase. In mammals, they are known to be involved in progression of various tumors. Specific inhibitors of mammalian histone deacetylases are an emerging class of promising novel anticancer drugs. Length = 306
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 490
KOG1342425 consensus Histone deacetylase complex, catalytic c 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
KOG1343797 consensus Histone deacetylase complex, catalytic c 100.0
KOG1344324 consensus Predicted histone deacetylase [Chromatin 100.0
KOG1343 797 consensus Histone deacetylase complex, catalytic c 100.0
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=4e-132  Score=1000.46  Aligned_cols=399  Identities=67%  Similarity=1.221  Sum_probs=382.4

Q ss_pred             CCCCCCeEEEEEcCCcCCCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCC
Q 041063           57 PDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPES  136 (490)
Q Consensus        57 ~~~~~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~  136 (490)
                      ++..+++|+|+|++++++|+||++|||+|+|++++++||..|||.++|++++|.+|+.+||++|||.+||+||++++|++
T Consensus         2 ~~~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n   81 (425)
T KOG1342|consen    2 YSLIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPEN   81 (425)
T ss_pred             CCcCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCccc
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCchhhhhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHHHHH
Q 041063          137 SGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGIL  216 (490)
Q Consensus       137 ~~~~~~~~~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~  216 (490)
                      +..  ..+++.+||+++|||+|+++|++|++++||||.||++|++++++|||||+||+|||+|++||||||+|||||||+
T Consensus        82 ~~~--~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~IL  159 (425)
T KOG1342|consen   82 MET--FNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGIL  159 (425)
T ss_pred             ccc--cchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHH
Confidence            765  456789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcEEEEEcccCCCchhhhccccCCCeEEEeccCcC-CCCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHH
Q 041063          217 ELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGL  295 (490)
Q Consensus       217 ~ll~~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g-~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~  295 (490)
                      +|||.++||||||||||||||||+|||.++||||||||+|| +||||||.+.|+|.++|++|+|||||.+|++|++|..+
T Consensus       160 eLlK~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~i  239 (425)
T KOG1342|consen  160 ELLKYHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESI  239 (425)
T ss_pred             HHHHhCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHH
Confidence            99999999999999999999999999999999999999996 79999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHHHHHHHHh
Q 041063          296 FRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAV  375 (490)
Q Consensus       296 f~~ii~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~~~t~~ll  375 (490)
                      |++||.++++.|+|++||+|||+|++.+|+||+||||++||++|+++++++++|+++|||||||++||||||||+|++++
T Consensus       240 f~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~  319 (425)
T KOG1342|consen  240 FKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLL  319 (425)
T ss_pred             HHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCC--CCCcccc
Q 041063          376 GVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQTTPATTQVP--EEPEEDM  453 (490)
Q Consensus       376 g~~~~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~~~v~~~~~p~~~~~~--~~~~~~~  453 (490)
                      |++++++||+++||+||||||+|++.+++|+|+|+++||++|++.+.+||+++++|||||||.+|+.....  .++|++.
T Consensus       320 ~~~~~~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~~~~d~~~~~~~~~~  399 (425)
T KOG1342|consen  320 DQELPNELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPNPDFDEDMVEDEKDP  399 (425)
T ss_pred             CccccccCCCccchhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCCCccchhhhhhhhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999732222  1344455


Q ss_pred             cCCC
Q 041063          454 ERRP  457 (490)
Q Consensus       454 ~~~~  457 (490)
                      +.|.
T Consensus       400 d~~~  403 (425)
T KOG1342|consen  400 DLRS  403 (425)
T ss_pred             cccc
Confidence            5554

>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 1e-153
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 1e-138
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 1e-85
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 1e-85
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 1e-85
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 2e-85
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 2e-85
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 3e-85
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 4e-85
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 4e-85
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 9e-85
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 1e-84
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 1e-84
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 2e-84
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 2e-42
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 2e-41
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 9e-23
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 1e-22
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 2e-22
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 3e-22
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 3e-22
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 8e-19
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 8e-19
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 3e-17
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 1e-12
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 1e-11
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure 
Iteration: 1

 Score =  537 bits (1384), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 249/368 (67%), Positives = 311/368 (84%), Gaps = 2/368 (0%)
Query: 61  KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRF 120
           K++V Y+Y+  IG+YYYGQGHPMKPHRIRM HNL+++YGL+R+ME+ RP  A   ++ ++
Sbjct: 2   KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 61
Query: 121 HTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLN 180
           H+DEY++FL S+ P++  +  +S+ ++RFNVGEDCPVFDGLF FCQ S GGS+  AVKLN
Sbjct: 62  HSDEYIKFLRSIRPDNMSE--YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLN 119
Query: 181 RGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEE 240
           R   D+AVNWAGGLHHAKKSEASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGVEE
Sbjct: 120 RQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEE 179
Query: 241 AFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPII 300
           AFYTTDRVMTVSFHK+G++FPGTG ++D+GAG+GK+YA+N P+ DG+DDES+  +F+PII
Sbjct: 180 AFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 239
Query: 301 QKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTI 360
            KVME+YQP AVVLQCGADSLSGDRLGCFNL+VKGHA C+  +++FN+PL++LGGGGYTI
Sbjct: 240 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTI 299
Query: 361 RNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNT 420
           RNVARCW YETAVA+  E  N+LPYN+Y+EYFGPD+ LH+ P NM N N  + MEKI+  
Sbjct: 300 RNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQR 359
Query: 421 LLEQLSGL 428
           L E L  L
Sbjct: 360 LFENLRML 367
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 0.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 0.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 0.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 0.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 1e-53
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 1e-50
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 5e-49
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 2e-47
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
 Score =  613 bits (1582), Expect = 0.0
 Identities = 157/395 (39%), Positives = 229/395 (57%), Gaps = 11/395 (2%)

Query: 44  MEEPTEGASLVSGPDGKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRR 103
           MEEP E A       G+     Y Y P              P R  M H+LI  Y LH++
Sbjct: 1   MEEPEEPA-----DSGQSLVPVYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQ 53

Query: 104 MEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFG 163
           M + +P  A   ++  FHTD Y++ L  VS E   D   S     + +G  CP  +G+F 
Sbjct: 54  MRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE---YGLGYLCPATEGIFD 110

Query: 164 FCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHR 223
           +  A  G +I AA  L  G   +A+NW+GG HHAKK EASGFCY+ND VLGIL L +   
Sbjct: 111 YAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFE 170

Query: 224 RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVP 282
           R+LYVD+D+HHGDGVE+AF  T +VMTVS HKF   FFPGTG + DVG G+G++Y++NVP
Sbjct: 171 RILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVP 230

Query: 283 LNDGLDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF 342
           + DG+ DE +  +   ++++V + + P AVVLQ GAD+++GD +  FN++  G   CL++
Sbjct: 231 IQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKY 290

Query: 343 LRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEP 402
           +  + +  ++LGGGGY + N ARCW Y T V +G    +++P +E++  +GPDY L + P
Sbjct: 291 ILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITP 350

Query: 403 CNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVPFQ 437
               + N    +++I N +   L  ++        
Sbjct: 351 SCRPDRNEPHRIQQILNYIKGNLKHVVIEGRSHHH 385
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
4hf7_A209 Putative acylhydrolase; PF13472 family, structural 80.27
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.5e-114  Score=892.77  Aligned_cols=373  Identities=59%  Similarity=1.164  Sum_probs=354.2

Q ss_pred             CCeEEEEEcCCcCCCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCCCCC
Q 041063           61 KRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDP  140 (490)
Q Consensus        61 ~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~  140 (490)
                      |++|+|+|||+|+.|.++++|||+|+|+++++++|+++||++.+++++|++|+.++|++||+++||++|++.++....+ 
T Consensus         2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~-   80 (376)
T 4a69_A            2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQG-   80 (376)
T ss_dssp             CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGG-
T ss_pred             CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchh-
Confidence            6889999999999999999999999999999999999999999999999999999999999999999999987654221 


Q ss_pred             chhhhhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHHHHHHHHh
Q 041063          141 SFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLK  220 (490)
Q Consensus       141 ~~~~~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~~ll~  220 (490)
                       ..+....|+++.|||+|+++|++|+++|||+|.||++|++|++++||||+||+|||++++|+||||||||||||++|++
T Consensus        81 -~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~  159 (376)
T 4a69_A           81 -FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLK  159 (376)
T ss_dssp             -GHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTT
T ss_pred             -hhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHH
Confidence             2234567889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEEcccCCCchhhhccccCCCeEEEeccCcCC-CCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHHHHHH
Q 041063          221 VHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGD-FFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPI  299 (490)
Q Consensus       221 ~~~RVliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~g~-ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~f~~i  299 (490)
                      .++||||||||||||||||+|||+||+|||+|||++++ ||||||..+|+|.|+|+||++|||||+|++|++|+.+|+++
T Consensus       160 ~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~  239 (376)
T 4a69_A          160 YHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPV  239 (376)
T ss_dssp             TCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHH
T ss_pred             hCCcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999965 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHHHHHHHHhCCCC
Q 041063          300 IQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEP  379 (490)
Q Consensus       300 i~pv~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~~~t~~llg~~~  379 (490)
                      |.|++++|+||+||+|||||+|.+||||+|+||.+||++|+++++++++|++++|||||++++++|||+++|++++|.++
T Consensus       240 l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~  319 (376)
T 4a69_A          240 INQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAI  319 (376)
T ss_dssp             HHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccccCCCcccCcC-CCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCcc
Q 041063          380 DNKLPYNEYYEYFGPDYTLHVE-PCNMENLNAHKDMEKIRNTLLEQLSGLIHAPSVP  435 (490)
Q Consensus       380 ~~~lP~~~~~~~~~p~~~l~~~-~~~~~~~n~~~~le~i~~~~~~~l~~l~~~~~v~  435 (490)
                      ++++|+++|++||+|+|+|+++ +++|+|+|+++|||+|+++++|||++++++||||
T Consensus       320 ~~~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~  376 (376)
T 4a69_A          320 SEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ  376 (376)
T ss_dssp             CSBCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred             cCCCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999998 8999999999999999999999999999999998
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 490
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 1e-106
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 5e-79
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 4e-57
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  319 bits (818), Expect = e-106
 Identities = 150/365 (41%), Positives = 221/365 (60%), Gaps = 6/365 (1%)

Query: 66  YFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEY 125
           Y Y P              P R  M H+LI  Y LH++M + +P  A   ++  FHTD Y
Sbjct: 5   YIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62

Query: 126 VEFLASVSPESSGDPSFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDAD 185
           ++ L  VS E   D   S     + +G DCP  +G+F +  A  G +I AA  L  G   
Sbjct: 63  LQHLQKVSQEGDDDHPDSI---EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCK 119

Query: 186 IAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTT 245
           +A+NW+GG HHAKK EASGFCY+ND VLGIL L +   R+LYVD+D+HHGDGVE+AF  T
Sbjct: 120 VAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFT 179

Query: 246 DRVMTVSFHKFGDF-FPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKVM 304
            +VMTVS HKF    FPGTG + DVG G+G++Y++NVP+ DG+ DE +  +   ++++V 
Sbjct: 180 SKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVY 239

Query: 305 EVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVA 364
           + + P AVVLQ GAD+++GD +  FN++  G   CL+++  + +  ++LGGGGY + N A
Sbjct: 240 QAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTA 299

Query: 365 RCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQ 424
           RCW Y T V +G    +++P +E++  +GPDY L + P    + N    +++I N +   
Sbjct: 300 RCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGN 359

Query: 425 LSGLI 429
           L  ++
Sbjct: 360 LKHVV 364
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-104  Score=814.34  Aligned_cols=359  Identities=42%  Similarity=0.829  Sum_probs=342.8

Q ss_pred             EEEEcCCcCCCCCCCCCCCChhHHHHHHHHHHHcCCCCCceecCCCCCCHHHHHccCcHHHHHHHHhhCCCCCCCCchhh
Q 041063           65 SYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEVNRPFPAGPSDIRRFHTDEYVEFLASVSPESSGDPSFSR  144 (490)
Q Consensus        65 ~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gL~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~~~~~  144 (490)
                      +|||||++.++  +..|||+|.|+++++++|+++||++++++++|++|+.++|++|||++||++|++.++....+.   .
T Consensus         4 vyiy~~~~~~~--~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~---~   78 (364)
T d1t64a_           4 VYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDH---P   78 (364)
T ss_dssp             EEECCHHHHHH--HTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCC---T
T ss_pred             eEEeCHHHhcc--CCCCCCCcHHHHHHHHHHHHcCCccCCEEeCCCCCCHHHHHHhCCHHHHHHHHHhhhcccccc---c
Confidence            68999999865  578999999999999999999999999999999999999999999999999998765432221   1


Q ss_pred             hhcccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCCCeeeecCCCCCCccccCCCCcchhcHHHHHHHHHHhcCCc
Q 041063          145 HLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRR  224 (490)
Q Consensus       145 ~~~~~~~~~D~p~~~~~~~~a~~aaGgsl~aa~~l~~g~~~~Ain~~gG~HHA~~~~a~GFC~~NdvaIAa~~ll~~~~R  224 (490)
                      ....|+++.|||+++++|++|++++||++.|++.+++|+.++|+||+||+|||++++|+||||||||||||+++++.++|
T Consensus        79 ~~~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~R  158 (364)
T d1t64a_          79 DSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFER  158 (364)
T ss_dssp             TTTTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSC
T ss_pred             hheeecCCCCCCCCchHHHHHHHHhhhHHHHHHHHHcCCcccccccCccccccccccccccccccHHHHHHHHHHhhhce
Confidence            23467899999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEEcccCCCchhhhccccCCCeEEEeccCc-CCCCCCCCCCCccCCCCCcceeecccCCCCCChhHHHHHHHHHHHHH
Q 041063          225 VLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKF-GDFFPGTGHIKDVGAGQGKFYALNVPLNDGLDDESFRGLFRPIIQKV  303 (490)
Q Consensus       225 VliVD~DvHHGdGtqe~Fy~d~~VltiSiH~~-g~ffPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~yl~~f~~ii~pv  303 (490)
                      |+|||||||||||||+||++||+|+|+|||++ ..||||||..+++|.|+|++|++||||++|++|++|+.+|+++|.|+
T Consensus       159 V~iiD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~  238 (364)
T d1t64a_         159 ILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEV  238 (364)
T ss_dssp             EEEEECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEEecccCCCCceeeeeecCCcccccccccccCCCCCCCCChhccCCcccccceeeeecccccChHHHHHHHHHhhHHH
Confidence            99999999999999999999999999999999 56999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEecCCCCCCCCCCCCcccchhhHHHHHHHHHhcCCCEEEEcCCCCCCchhHHHHHHHHHHHhCCCCCCCC
Q 041063          304 MEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKL  383 (490)
Q Consensus       304 ~~~F~PdlIvvsaG~Da~~gDpLG~~~Lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~var~w~~~t~~llg~~~~~~l  383 (490)
                      +++|+||+||||||||+|.+||||+|+||.+||.+|+++|+++++|++++|||||++.++||||+++|++++|+++++++
T Consensus       239 ~~~f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~~~~  318 (364)
T d1t64a_         239 YQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEI  318 (364)
T ss_dssp             HHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCSBC
T ss_pred             hhcCCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHHHcCCCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccCCCcccCcCCCCCCCCCcHHHHHHHHHHHHHHcCCC
Q 041063          384 PYNEYYEYFGPDYTLHVEPCNMENLNAHKDMEKIRNTLLEQLSGL  428 (490)
Q Consensus       384 P~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l  428 (490)
                      |+|+||++|+|+|+|++.+++|+|+|+.+||++|++.+.+||+.+
T Consensus       319 P~~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~i~~~i~~~l~~~  363 (364)
T d1t64a_         319 PDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV  363 (364)
T ss_dssp             CCCTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCchhhhhcCCCcccccCcccccccCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999986
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure