Citrus Sinensis ID: 041090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MSSQGGSRRSQKRAPSTSKRTSSSENGGNLSKPPSPQGESSSSVGGAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIMRI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEcHHHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHcccEEEcEEEccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHccEEEEEcccccHHHHHHHHHHHcccEEEEEEccEEEEEEEHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHccccccEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEccHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHHHcccccccEcccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHcccccccEEEccccHHHHHHHHHHHccccEEEEEEccEEEEEEccHHHHHHHHcccccccccEEEEEEccc
Coil and Loop (DISEMBL)
mssqggsrrsqkrapstskrtsssenggnlskppspqgessssvggaggerTVKKLRLSkaltipegtivSDACRRMASRRVDAVLLTDANALLsgivtdkdittrviaeglrpdqtvvskimtrnpifvtsDSLAIEALQKMVQGKfrhlpvvengevIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVErqwgsnfsapYAFIETLRERmfkpslstiitenakvaivspsdPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIMRI
Flexible Loop (DISEMBL)
mssqggsrrsqkrapstskrtsssenggnlskppspqgessssvggaggertvkklrlskaltipegtivsdacRRMASRRVDAVLLTDanallsgivtdkdittrviaeglrpdqtvvskimtrnpifvTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIItenakvaivspsDPVAVAAKKMREfrsnsalivtgskiqgiLTSKDVLMRVVAqnlspeltlverFIMRI
Low Complexity Region (SEG)
MssqggsrrsqKRAPSTSKRTSSSENGGNLSKPPSPQgessssvggaggeRTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIMRI
Disordered region (IsUnstruct)
*********************************************************LSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFI***
Disordered Region (DISOPRED)
*******************************************************LRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQ*GSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIMRI
Disordered Region (DISEMBL)
**************************************************RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIMRI
Disordered Region (DISPRO)
****************************************************V*KLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIMRI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSQGGSRRSQKRAPSTSKRTSSSENGGNLSKPPSPQGESSSSVGGAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIMRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q9LF97	556	CBS domain-containing pro	yes	no	0.982	0.519	0.769	1e-124
Q9SJQ5	536	CBS domain-containing pro	no	no	0.860	0.472	0.783	1e-113
Q9FMV3	543	CBS domain-containing pro	no	no	0.955	0.517	0.612	4e-98
P0DH79	548	CBS domain-containing pro	no	no	0.836	0.448	0.635	3e-90
Q0WLC7	548	CBS domain-containing pro	no	no	0.836	0.448	0.635	3e-90
O13965	730	Meiotically up-regulated	yes	no	0.785	0.316	0.289	2e-27
P32987	164	Uncharacterized 17.7 kDa	N/A	no	0.486	0.871	0.272	3e-07
Q58069	194	Uncharacterized protein M	yes	no	0.316	0.479	0.287	4e-06
Q9LEV3	206	CBS domain-containing pro	no	no	0.326	0.466	0.3	2e-05
P50100	196	Uncharacterized protein M	no	no	0.299	0.448	0.303	2e-05

>sp|Q9LF97|Y3295_ARATH CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/295 (76%), Positives = 255/295 (86%), Gaps = 6/295 (2%)

Query: 2   SSQGGSRRSQ--KRAPSTSKRTSSSENG---GNLSKPPSPQGESSSSVGGAGGERTVKKL 56
           SS  G R +   +R P  SK+   SENG   GN SKP S       S   + GERTVKKL
Sbjct: 9   SSTSGRRSNSTVRRGPPPSKKPVQSENGSVNGNTSKPNS-PPPQPQSQAPSNGERTVKKL 67

Query: 57  RLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ 116
           RLSKALTIPEGT V DACRRMA+RRVDA LLTD++ALLSGIVTDKD+ TRVIAEGLRPDQ
Sbjct: 68  RLSKALTIPEGTTVFDACRRMAARRVDACLLTDSSALLSGIVTDKDVATRVIAEGLRPDQ 127

Query: 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRM 176
           T+VSK+MTRNPIFVTSDSLA+EALQKMVQGKFRHLPVVENGEVIA+LDITKCLYDAISRM
Sbjct: 128 TLVSKVMTRNPIFVTSDSLALEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRM 187

Query: 177 EKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPS 236
           EKAAEQGSA+AAAVEGVE+QWGS +SAPYAFIETLRERMFKP+LSTIIT+N+KVA+V+PS
Sbjct: 188 EKAAEQGSALAAAVEGVEKQWGSGYSAPYAFIETLRERMFKPALSTIITDNSKVALVAPS 247

Query: 237 DPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFI 291
           DPV+VAAK+MR+ R NS +I TG+KI GILTSKD+LMRVVAQNLSPELTLVE+ +
Sbjct: 248 DPVSVAAKRMRDLRVNSVIISTGNKISGILTSKDILMRVVAQNLSPELTLVEKVM 302

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJQ5|Y2650_ARATH CBS domain-containing protein CBSCBSPB2 OS=Arabidopsis thaliana GN=CBSCBSPB2 PE=2 SV=1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/263 (78%), Positives = 227/263 (86%), Gaps = 10/263 (3%)

Query: 29  NLSKPPSPQGESSSSVGGAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLT 88
           N SKP SP  +  S      GERTVKKLRLSKALTI EGT V DACRRMA+RRVDAVLLT
Sbjct: 43  NTSKPDSPLAQPVSD-----GERTVKKLRLSKALTINEGTTVFDACRRMAARRVDAVLLT 97

Query: 89  DANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKF 148
           D++ALLSGIVTDKDI TRVIAEGLRP+ T+VSK+MTRNPIFVTSDSLAIEALQKMVQGKF
Sbjct: 98  DSSALLSGIVTDKDIATRVIAEGLRPEHTLVSKVMTRNPIFVTSDSLAIEALQKMVQGKF 157

Query: 149 RHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFI 208
           RHLPVVENGEVIA+LDITKCLYDAISRMEKAAEQGSA+A AVE  ER WG   S  +AFI
Sbjct: 158 RHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSALATAVE--ERHWG---SGNFAFI 212

Query: 209 ETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTS 268
           +TLRERMFKP+LSTI+TEN KVA+VS SDPV VA+KKMR+ R NS +I  G+KI GILTS
Sbjct: 213 DTLRERMFKPALSTIVTENTKVALVSASDPVFVASKKMRDLRVNSVIIAVGNKIHGILTS 272

Query: 269 KDVLMRVVAQNLSPELTLVERFI 291
           KD+LMRVVAQNLSPELTLVE+ +
Sbjct: 273 KDILMRVVAQNLSPELTLVEKVM 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMV3|Y5349_ARATH CBS domain-containing protein CBSCBSPB1 OS=Arabidopsis thaliana GN=CBSCBSPB1 PE=1 SV=1

 Score =  357 bits (917), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 182/297 (61%), Positives = 228/297 (76%), Gaps = 16/297 (5%)

Query: 1   MSSQGGSRRSQKRAPSTSKRTSSSENGGNLSKPPSPQG---------ESSSSVGGAGGER 51
           M+SQGG RRS          T++S +G   S   + +G          S S +G  GGER
Sbjct: 1   MASQGGPRRSLSV-------TTASLHGKKKSMDMAERGLDTGRRSLTVSRSPLGLTGGER 53

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
           TVK+LRLSKALT+P  T + +AC+RMASRRVDA+LLTD+N +L GI+TDKDI TRVI++ 
Sbjct: 54  TVKRLRLSKALTVPATTTIYEACKRMASRRVDALLLTDSNEMLCGILTDKDIATRVISQE 113

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYD 171
           L  ++T VSK+MT+NP+FV S++LA+EALQKMVQGKFRHLPVVENGEVIA+LDI KCLYD
Sbjct: 114 LNVEETPVSKVMTKNPMFVLSETLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYD 173

Query: 172 AISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVA 231
           AI+RME+AAE+G AIAAAVEGVE+ WG+N S P  FIETLR+RMF+PSLSTII ++ KV 
Sbjct: 174 AIARMERAAEKGKAIAAAVEGVEKSWGTNTSVPNTFIETLRDRMFRPSLSTIIPDDTKVL 233

Query: 232 IVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVE 288
            VSP+D V   AKKM EF+S+ A+++   K++GI TSKD+LMRVVA+NL P  TLVE
Sbjct: 234 KVSPTDTVLTVAKKMVEFQSSCAVVIIEDKLRGIFTSKDILMRVVAENLPPSETLVE 290

Arabidopsis thaliana (taxid: 3702)

>sp|P0DH79|Y5064_ARATH CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1

 Score =  332 bits (850), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 157/247 (63%), Positives = 203/247 (82%)

Query: 45  GGAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDIT 104
           G   GERTVK+LRL KALT+P+ T + +ACRRMA+RRVDA+LLTD+NALL GI+TD+DI 
Sbjct: 55  GERSGERTVKRLRLCKALTVPDSTTLFEACRRMAARRVDALLLTDSNALLCGILTDRDIA 114

Query: 105 TRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILD 164
           T+VIA+ L  ++T VSK+MT+NP+FV SD++A+EALQKMVQGKFRHLPVVENGEVIA+LD
Sbjct: 115 TKVIAKQLNLEETPVSKVMTKNPVFVLSDTIAVEALQKMVQGKFRHLPVVENGEVIALLD 174

Query: 165 ITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTII 224
           I KCLYDAI+RME++ E+G AIAAAVEGVE+ WG++ + P  F+ETLRER+FKPSLSTII
Sbjct: 175 IAKCLYDAIARMERSVEKGKAIAAAVEGVEKNWGTSIAGPNTFMETLRERIFKPSLSTII 234

Query: 225 TENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPEL 284
            EN KV  V   + V     KM E++S++A+++  +K+ GILTSKD+LMRV++QNL  E 
Sbjct: 235 PENTKVLKVGLDETVLGVTMKMVEYQSSAAMVMVENKLVGILTSKDILMRVISQNLPQET 294

Query: 285 TLVERFI 291
           T VE+ +
Sbjct: 295 TTVEKVM 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WLC7|Y5053_ARATH CBS domain-containing protein CBSCBSPB4 OS=Arabidopsis thaliana GN=CBSCBSPB4 PE=2 SV=2

 Score =  332 bits (850), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 157/247 (63%), Positives = 203/247 (82%)

Query: 45  GGAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDIT 104
           G   GERTVK+LRL KALT+P+ T + +ACRRMA+RRVDA+LLTD+NALL GI+TD+DI 
Sbjct: 55  GERSGERTVKRLRLCKALTVPDSTTLFEACRRMAARRVDALLLTDSNALLCGILTDRDIA 114

Query: 105 TRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILD 164
           T+VIA+ L  ++T VSK+MT+NP+FV SD++A+EALQKMVQGKFRHLPVVENGEVIA+LD
Sbjct: 115 TKVIAKQLNLEETPVSKVMTKNPVFVLSDTIAVEALQKMVQGKFRHLPVVENGEVIALLD 174

Query: 165 ITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTII 224
           I KCLYDAI+RME++ E+G AIAAAVEGVE+ WG++ + P  F+ETLRER+FKPSLSTII
Sbjct: 175 IAKCLYDAIARMERSVEKGKAIAAAVEGVEKNWGTSIAGPNTFMETLRERIFKPSLSTII 234

Query: 225 TENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPEL 284
            EN KV  V   + V     KM E++S++A+++  +K+ GILTSKD+LMRV++QNL  E 
Sbjct: 235 PENTKVLKVGLDETVLGVTMKMVEYQSSAAMVMVENKLVGILTSKDILMRVISQNLPQET 294

Query: 285 TLVERFI 291
           T VE+ +
Sbjct: 295 TTVEKVM 301

Arabidopsis thaliana (taxid: 3702)

>sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug70 PE=1 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 137/256 (53%), Gaps = 25/256 (9%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
           TV    L  ALT+   ++V++  + MA++R + VL+ D +  L+GIVT  DI TR +  G
Sbjct: 64  TVDSAALDPALTVHMQSLVTETAQLMAAKRQNCVLVVDDDEQLAGIVTATDIATRCVGAG 123

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV----------ENGEVIA 161
           L   QT+++ IM+ +P+ +TSD+   +AL  M++ KFRHLPVV          + G+VI 
Sbjct: 124 LNARQTLIADIMSTSPLCITSDTRFDDALLLMIEHKFRHLPVVSDGGPDGSAGDEGDVIG 183

Query: 162 ILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQW--------------GSNFSAPY-A 206
           I+++  CL + ++R+ +  E    +  A+EG + +                 N +A +  
Sbjct: 184 IINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLE 243

Query: 207 FIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGIL 266
           ++E+L+++     + ++I  + +  +V     VA A + M     ++ L++    + G+ 
Sbjct: 244 YVESLKKKASGLEIMSLIDSSEEPFLVGTRTTVAEATESMARSGVSAVLVMDNGAVSGVF 303

Query: 267 TSKDVLMRVVAQNLSP 282
           T+ DV++RV+A  L P
Sbjct: 304 TAHDVVLRVLAAGLDP 319

Has a role in meiosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 11/154 (7%)

Query: 53  VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL 112
           V ++  +K   +     +++A + M    + ++++ D+   + GI+T++DI   V A   
Sbjct: 5   VSQIATTKVYVVKPNVTIAEAAKEMKEHNLGSLVVIDSQNRVVGIITERDI---VKAASN 61

Query: 113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGE---VIAILDITKC 168
           R   + V K MT++   VT D+   +AL  M+   FRHLP+++ NG+   +++I D+ + 
Sbjct: 62  RDIDSPVEKYMTKDVKGVTEDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARA 121

Query: 169 LYDAIS-RMEKAAEQ--GSAIAAAVEGVE-RQWG 198
           L D  + +  K AE+  G+ +   V G+E  ++G
Sbjct: 122 LLDVHTMQFGKPAEEVKGTGVICPVCGMEIDEYG 155

Acidianus ambivalens (taxid: 2283)

>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0653 PE=4 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 70  VSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF 129
           + D    M    + AV++ + N  + GIVT++DI  RV+++ L+P   +  ++M++  I 
Sbjct: 26  IYDIANIMTENNIGAVVIVENNKPI-GIVTERDIVKRVVSKNLKPKDVLAEEVMSKKIIT 84

Query: 130 VTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL 163
           +  ++   EA + M     + LPVV++GE++ I+
Sbjct: 85  IPQNASITEAAKIMATHGIKRLPVVKDGELVGIV 118

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 70  VSDACRRMASRRVDAVLLTD--ANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP 127
           V DA + M    V A+++        L+GI+T++D   ++I +G     T V  IMT   
Sbjct: 81  VYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEN 140

Query: 128 --IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDI 165
             I VT ++  + A+Q M   + RH+PV+++  +I ++ I
Sbjct: 141 KLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSI 180

Arabidopsis thaliana (taxid: 3702)

>sp|P50100|Y525_METKA Uncharacterized protein MK0525 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0525 PE=4 SV=2

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 76  RMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSL 135
           +M    + +V++ +      GI+T++D+  +V+++G  PD+ +   IM++  I V  D  
Sbjct: 29  KMREHGIGSVVIVNEKDEPIGIITERDLVIKVVSQGKNPDEVIARDIMSQPVITVEEDME 88

Query: 136 AIEALQKMVQGKFRHLPVV-ENGEVIAIL 163
             EA++ MV    R LP+V +NG++I I+
Sbjct: 89  VNEAVKLMVDKGIRRLPIVDDNGKLIGIV 117

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
296082621	556	unnamed protein product [Vitis vinifera]	0.959	0.507	0.802	1e-127
225438337	539	PREDICTED: CBS domain-containing protein	0.935	0.510	0.816	1e-127
118489093	555	unknown [Populus trichocarpa x Populus d	0.972	0.515	0.763	1e-127
449457321	539	PREDICTED: CBS domain-containing protein	0.901	0.491	0.824	1e-125
449519605	539	PREDICTED: LOW QUALITY PROTEIN: CBS doma	0.901	0.491	0.816	1e-124
42565877	556	CBS / octicosapeptide/Phox/Bemp1 domain-	0.982	0.519	0.769	1e-122
224093670	488	predicted protein [Populus trichocarpa]	0.812	0.489	0.884	1e-122
255574194	546	conserved hypothetical protein [Ricinus	0.816	0.439	0.881	1e-122
297816584	556	CBS domain-containing protein [Arabidops	0.948	0.501	0.780	1e-121
297612744	542	Os12g0169400 [Oryza sativa Japonica Grou	0.942	0.511	0.739	1e-117

>gi|296082621|emb|CBI21626.3| unnamed protein product [Vitis vinifera]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/293 (80%), Positives = 255/293 (87%), Gaps = 11/293 (3%)

Query: 10  SQKRAPST-SKRTSSSENGGNLSKPPSPQGESS----------SSVGGAGGERTVKKLRL 58
           SQKR PST SK+   +ENG + +K  SP   SS          S  G   G RTVKKLRL
Sbjct: 16  SQKRGPSTASKKAVLAENGSSNAKASSPTQISSDIFWVGLDYLSFDGLVDGVRTVKKLRL 75

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTV 118
           SKALTIPEGT VSDACRRMA+RRVDAVLLTD+NALLSGIVTDKDI TRVIAE LRP+QTV
Sbjct: 76  SKALTIPEGTTVSDACRRMAARRVDAVLLTDSNALLSGIVTDKDIATRVIAEELRPEQTV 135

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           VSKIMTR+PIFV SDSLAIEAL+KMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK
Sbjct: 136 VSKIMTRHPIFVNSDSLAIEALEKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 195

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
           AAE GSAIAAAVEGVERQWGSNF+APY+FIETLRERMFKP+LSTII EN KVAIVSPSDP
Sbjct: 196 AAEHGSAIAAAVEGVERQWGSNFTAPYSFIETLRERMFKPALSTIIAENTKVAIVSPSDP 255

Query: 239 VAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFI 291
           ++VAAKKMRE+R NS +I+TGSKIQGILTSKD+LMRVVAQNLSPELTLVE+ +
Sbjct: 256 ISVAAKKMREYRVNSVIIMTGSKIQGILTSKDILMRVVAQNLSPELTLVEKVM 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438337|ref|XP_002272502.1| PREDICTED: CBS domain-containing protein CBSCBSPB3-like [Vitis vinifera]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/283 (81%), Positives = 251/283 (88%), Gaps = 8/283 (2%)

Query: 10  SQKRAPST-SKRTSSSENGGNLSKPPSPQGESSSSVGGAGGERTVKKLRLSKALTIPEGT 68
           SQKR PST SK+   +ENG + +K  SP            G RTVKKLRLSKALTIPEGT
Sbjct: 16  SQKRGPSTASKKAVLAENGSSNAKASSP-------THLVDGVRTVKKLRLSKALTIPEGT 68

Query: 69  IVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI 128
            VSDACRRMA+RRVDAVLLTD+NALLSGIVTDKDI TRVIAE LRP+QTVVSKIMTR+PI
Sbjct: 69  TVSDACRRMAARRVDAVLLTDSNALLSGIVTDKDIATRVIAEELRPEQTVVSKIMTRHPI 128

Query: 129 FVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAA 188
           FV SDSLAIEAL+KMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAE GSAIAA
Sbjct: 129 FVNSDSLAIEALEKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEHGSAIAA 188

Query: 189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMRE 248
           AVEGVERQWGSNF+APY+FIETLRERMFKP+LSTII EN KVAIVSPSDP++VAAKKMRE
Sbjct: 189 AVEGVERQWGSNFTAPYSFIETLRERMFKPALSTIIAENTKVAIVSPSDPISVAAKKMRE 248

Query: 249 FRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFI 291
           +R NS +I+TGSKIQGILTSKD+LMRVVAQNLSPELTLVE+ +
Sbjct: 249 YRVNSVIIMTGSKIQGILTSKDILMRVVAQNLSPELTLVEKVM 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489093|gb|ABK96353.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/313 (76%), Positives = 261/313 (83%), Gaps = 27/313 (8%)

Query: 1   MSSQGG------SRRSQKRAPSTSKRTSSS------ENGG----------NLSKPPSPQG 38
           MSSQ G      +  +QKR PST+++ SSS      ENGG          N SKP SP  
Sbjct: 1   MSSQMGPPPPKRTSLTQKRGPSTARKLSSSSASLASENGGTTTTNISQVGNSSKPSSPNA 60

Query: 39  ESSSSVGGAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIV 98
            SS      GGERTVKKL+LSKALTIPEGT V DACRRMA+RRV+AVLLTDANALLSGIV
Sbjct: 61  PSS-----VGGERTVKKLKLSKALTIPEGTTVFDACRRMAARRVNAVLLTDANALLSGIV 115

Query: 99  TDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGE 158
           TDKDI+ RVIAEGLRP+ T+VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGE
Sbjct: 116 TDKDISARVIAEGLRPEHTIVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGE 175

Query: 159 VIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKP 218
           VIA+LDIT+CLYDAISRMEKAAEQGSAIAAAVEGVERQWG+NF+APYAFIETLRERMFKP
Sbjct: 176 VIALLDITRCLYDAISRMEKAAEQGSAIAAAVEGVERQWGNNFTAPYAFIETLRERMFKP 235

Query: 219 SLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQ 278
           SLSTII E +KVAI SPSDPV  A KKMRE R NS ++VTG+KIQGILTSKD+LMRVVAQ
Sbjct: 236 SLSTIIGEQSKVAIASPSDPVYAATKKMRELRVNSVIVVTGNKIQGILTSKDILMRVVAQ 295

Query: 279 NLSPELTLVERFI 291
           NLSPELTLVE+ +
Sbjct: 296 NLSPELTLVEKVM 308

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457321|ref|XP_004146397.1| PREDICTED: CBS domain-containing protein CBSCBSPB3-like [Cucumis sativus]

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/273 (82%), Positives = 245/273 (89%), Gaps = 8/273 (2%)

Query: 23  SSENG----GNLSKPPSPQGESSSSVGGAGGERTVKKLRLSKALTIPEGTIVSDACRRMA 78
           S +NG    GN+ KP SP    S++V    GERTVKKLRLSKALTIPEGT VS+ACRRMA
Sbjct: 28  SGDNGISSNGNVPKPGSPTQLPSAAV----GERTVKKLRLSKALTIPEGTTVSEACRRMA 83

Query: 79  SRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138
           +RRVDAVLLTDANALLSGI+TDKD+ TRVIAEGLRP+QTVVSKIMTRNPIFVTSDSLA+E
Sbjct: 84  ARRVDAVLLTDANALLSGILTDKDVATRVIAEGLRPEQTVVSKIMTRNPIFVTSDSLAME 143

Query: 139 ALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG 198
           ALQKMVQGKFRHLPVVENGEVIA+LDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG
Sbjct: 144 ALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG 203

Query: 199 SNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT 258
           S+FSAPYAFIETLRERMFKPSLSTI++EN K AIVS SDP+ VAAKKMRE R NS +I  
Sbjct: 204 SDFSAPYAFIETLRERMFKPSLSTILSENTKAAIVSASDPIYVAAKKMRELRVNSVVITM 263

Query: 259 GSKIQGILTSKDVLMRVVAQNLSPELTLVERFI 291
           G+KIQGILTSKD+LMRVVA NLSPELTLVE+ +
Sbjct: 264 GTKIQGILTSKDILMRVVAHNLSPELTLVEKVM 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519605|ref|XP_004166825.1| PREDICTED: LOW QUALITY PROTEIN: CBS domain-containing protein CBSCBSPB3-like [Cucumis sativus]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/273 (81%), Positives = 244/273 (89%), Gaps = 8/273 (2%)

Query: 23  SSENG----GNLSKPPSPQGESSSSVGGAGGERTVKKLRLSKALTIPEGTIVSDACRRMA 78
           S +NG    GN+ KP SP    S++V    GERTVKKLRLSKALTIPEGT VS+ACRRMA
Sbjct: 28  SGDNGISSNGNVPKPGSPTQLPSAAV----GERTVKKLRLSKALTIPEGTTVSEACRRMA 83

Query: 79  SRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE 138
           +RRVDAVLLTDANALLSGI+TDKD+ TRVIAEGLRP+QTVVSKIMTRNPIFVTSDSLA+E
Sbjct: 84  ARRVDAVLLTDANALLSGILTDKDVATRVIAEGLRPEQTVVSKIMTRNPIFVTSDSLAME 143

Query: 139 ALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG 198
           ALQKMVQGKFRHLPVVENGEVIA+LDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG
Sbjct: 144 ALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG 203

Query: 199 SNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT 258
           S+FSAPYAFIETLRERMFKPSLSTI++EN K AIVS SDP+ VA +KMRE R NS +I  
Sbjct: 204 SDFSAPYAFIETLRERMFKPSLSTILSENTKAAIVSASDPIYVAXQKMRELRVNSVVITM 263

Query: 259 GSKIQGILTSKDVLMRVVAQNLSPELTLVERFI 291
           G+KIQGILTSKD+LMRVVA NLSPELTLVE+ +
Sbjct: 264 GTKIQGILTSKDILMRVVAHNLSPELTLVEKVM 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565877|ref|NP_190863.3| CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana] gi|334185937|ref|NP_001190074.1| CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana] gi|75263848|sp|Q9LF97.1|Y3295_ARATH RecName: Full=CBS domain-containing protein CBSCBSPB3 gi|7529719|emb|CAB86899.1| putative protein [Arabidopsis thaliana] gi|332645495|gb|AEE79016.1| CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana] gi|332645496|gb|AEE79017.1| CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/295 (76%), Positives = 255/295 (86%), Gaps = 6/295 (2%)

Query: 2   SSQGGSRRSQ--KRAPSTSKRTSSSENG---GNLSKPPSPQGESSSSVGGAGGERTVKKL 56
           SS  G R +   +R P  SK+   SENG   GN SKP S       S   + GERTVKKL
Sbjct: 9   SSTSGRRSNSTVRRGPPPSKKPVQSENGSVNGNTSKPNS-PPPQPQSQAPSNGERTVKKL 67

Query: 57  RLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ 116
           RLSKALTIPEGT V DACRRMA+RRVDA LLTD++ALLSGIVTDKD+ TRVIAEGLRPDQ
Sbjct: 68  RLSKALTIPEGTTVFDACRRMAARRVDACLLTDSSALLSGIVTDKDVATRVIAEGLRPDQ 127

Query: 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRM 176
           T+VSK+MTRNPIFVTSDSLA+EALQKMVQGKFRHLPVVENGEVIA+LDITKCLYDAISRM
Sbjct: 128 TLVSKVMTRNPIFVTSDSLALEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRM 187

Query: 177 EKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPS 236
           EKAAEQGSA+AAAVEGVE+QWGS +SAPYAFIETLRERMFKP+LSTIIT+N+KVA+V+PS
Sbjct: 188 EKAAEQGSALAAAVEGVEKQWGSGYSAPYAFIETLRERMFKPALSTIITDNSKVALVAPS 247

Query: 237 DPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFI 291
           DPV+VAAK+MR+ R NS +I TG+KI GILTSKD+LMRVVAQNLSPELTLVE+ +
Sbjct: 248 DPVSVAAKRMRDLRVNSVIISTGNKISGILTSKDILMRVVAQNLSPELTLVEKVM 302

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093670|ref|XP_002309952.1| predicted protein [Populus trichocarpa] gi|222852855|gb|EEE90402.1| predicted protein [Populus trichocarpa]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/243 (88%), Positives = 230/243 (94%)

Query: 49  GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVI 108
           GERTVKKLRLSKALTIPEGT VSDACRRMA+RRV+A LLTDANALLSGIVTDKDI+ RVI
Sbjct: 1   GERTVKKLRLSKALTIPEGTTVSDACRRMAARRVNAALLTDANALLSGIVTDKDISARVI 60

Query: 109 AEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKC 168
           AEGLRPDQT+VSKIMTRNPIFV SDSLAIEALQKMVQGKFRHLPVVENGEVIA+LDITKC
Sbjct: 61  AEGLRPDQTIVSKIMTRNPIFVNSDSLAIEALQKMVQGKFRHLPVVENGEVIALLDITKC 120

Query: 169 LYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENA 228
           LYDAISRMEKAAEQGSAIAAAVEGVERQWG+NF+AP+ FIETLRERMFKPSLSTII E  
Sbjct: 121 LYDAISRMEKAAEQGSAIAAAVEGVERQWGNNFTAPHTFIETLRERMFKPSLSTIIGEQT 180

Query: 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVE 288
           KVA+ SPSDPV VAAKKMRE R NSA++VTG+KIQGILTSKD+LMRVVAQNLSPELTLVE
Sbjct: 181 KVAVASPSDPVYVAAKKMRELRVNSAIVVTGNKIQGILTSKDILMRVVAQNLSPELTLVE 240

Query: 289 RFI 291
           + +
Sbjct: 241 KVM 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574194|ref|XP_002528012.1| conserved hypothetical protein [Ricinus communis] gi|223532581|gb|EEF34368.1| conserved hypothetical protein [Ricinus communis]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/244 (88%), Positives = 230/244 (94%)

Query: 48  GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRV 107
           GGERTVKKLRLSKALTIPEGT VSDACRRMA+RRVDAVLLTDANALLSGIVTDKDI+ RV
Sbjct: 56  GGERTVKKLRLSKALTIPEGTTVSDACRRMAARRVDAVLLTDANALLSGIVTDKDISARV 115

Query: 108 IAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITK 167
           IAEGLRP+QT+VSKIMTRNPIFV SDSLAI+ALQKMVQGKFRHLPVVENGEVIA+LDITK
Sbjct: 116 IAEGLRPEQTIVSKIMTRNPIFVASDSLAIDALQKMVQGKFRHLPVVENGEVIALLDITK 175

Query: 168 CLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITEN 227
           CLYDAISRMEK AEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTII E 
Sbjct: 176 CLYDAISRMEKVAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIIGEQ 235

Query: 228 AKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLV 287
            KVAI SPSDPV VAAK+MR+ + NS +IVTG+KIQGILTSKD+LMRVVA N+SPELTLV
Sbjct: 236 TKVAIASPSDPVYVAAKRMRDLQVNSVIIVTGNKIQGILTSKDILMRVVAHNISPELTLV 295

Query: 288 ERFI 291
           E+ +
Sbjct: 296 EKVM 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816584|ref|XP_002876175.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322013|gb|EFH52434.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/283 (78%), Positives = 248/283 (87%), Gaps = 4/283 (1%)

Query: 12  KRAPSTSKRTSSSENG---GNLSKPPSPQGESSSSVGGAGGERTVKKLRLSKALTIPEGT 68
           +R P  SK+   SENG   GN SKP S       S   + GERTVKKLRLSKALTIPEGT
Sbjct: 21  RRGPPPSKKPVQSENGSVNGNTSKPNS-PPPQPQSQAPSNGERTVKKLRLSKALTIPEGT 79

Query: 69  IVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI 128
            + DACRRMA+RRVDA LLTD++ALLSGIVTDKD+ TRVIAEGLRPDQT+VSK+MTRNPI
Sbjct: 80  TIFDACRRMAARRVDACLLTDSSALLSGIVTDKDVATRVIAEGLRPDQTLVSKVMTRNPI 139

Query: 129 FVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAA 188
           FVTSDSLA+EALQKMVQGKFRHLPVVENGEVIA+LDITKCLYDAISRMEKAAEQGSA+AA
Sbjct: 140 FVTSDSLALEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSALAA 199

Query: 189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMRE 248
           AVEGVE+QWGS +SAPYAFIETLRERMFKP+LSTIITEN+KVA+V+PSDPV+VAAK+MR+
Sbjct: 200 AVEGVEKQWGSGYSAPYAFIETLRERMFKPALSTIITENSKVALVAPSDPVSVAAKRMRD 259

Query: 249 FRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFI 291
            R NS +I  G+KI GILTSKD+LMRVVAQNL PELTLVE+ +
Sbjct: 260 LRVNSVIISNGNKIHGILTSKDILMRVVAQNLPPELTLVEKVM 302

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297612744|ref|NP_001066263.2| Os12g0169400 [Oryza sativa Japonica Group] gi|77553133|gb|ABA95929.1| CBS domain-containing protein, putative, expressed [Oryza sativa Japonica Group] gi|255670087|dbj|BAF29282.2| Os12g0169400 [Oryza sativa Japonica Group]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/292 (73%), Positives = 240/292 (82%), Gaps = 15/292 (5%)

Query: 7   SRRSQKRAPSTSKRTSSSENGGNL-------SKPPSPQGESSSSVGGAGGERTVKKLRLS 59
           SRR++ R PS S R S   +           SKP SP        G   GERTV+KLRLS
Sbjct: 11  SRRTRSRPPSASSRKSDDPSAAAANGNGKASSKPTSP--------GQLTGERTVRKLRLS 62

Query: 60  KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVV 119
           KALTIPEGT VS+ACRRMA+RRVDAVLLTDA  LLSGIVTDKD+ TRV+AEGLR +QT++
Sbjct: 63  KALTIPEGTTVSEACRRMAARRVDAVLLTDAQGLLSGIVTDKDVATRVVAEGLRVEQTIM 122

Query: 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKA 179
           SKIMTRNP +  SD+LAIEALQKMVQGKFRHLPVVENGEVIA+LDI KCLYDAISR+EKA
Sbjct: 123 SKIMTRNPTYAMSDTLAIEALQKMVQGKFRHLPVVENGEVIAMLDIAKCLYDAISRLEKA 182

Query: 180 AEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPV 239
           AEQGSAIAAAVEGVERQ G NFSAPYAFIETLRERMFKPSLSTI+TE  KVAIVSPSDPV
Sbjct: 183 AEQGSAIAAAVEGVERQLGGNFSAPYAFIETLRERMFKPSLSTIVTEGTKVAIVSPSDPV 242

Query: 240 AVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFI 291
            VA +KMREFR NS ++ TG+ +QGI TSKD+LMRVVAQNLSPELTLVE+ +
Sbjct: 243 YVATQKMREFRVNSVVVATGNTLQGIFTSKDLLMRVVAQNLSPELTLVEKVM 294

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2167331	543	AT5G63490 "AT5G63490" [Arabido	0.809	0.438	0.684	3.1e-83
ASPGD|ASPL0000033419	666	AN5716 [Emericella nidulans (t	0.806	0.355	0.383	6.7e-38
CGD|CAL0003543	605	orf19.5238 [Candida albicans (	0.761	0.370	0.323	1.6e-26
POMBASE|SPAC24C9.05c	730	mug70 "conserved protein Mug20	0.493	0.198	0.348	9.6e-20
UNIPROTKB|Q5LRC8	144	SPO2201 "CBS domain protein" [	0.411	0.840	0.288	2.2e-11
TIGR_CMR|SPO_2201	144	SPO_2201 "CBS domain protein"	0.411	0.840	0.288	2.2e-11
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.435	0.876	0.312	3e-11
UNIPROTKB|Q8EDA6	620	SO_2856 "Putative nucleotidylt	0.465	0.220	0.326	2.5e-10
TIGR_CMR|SO_2856	620	SO_2856 "CBS domain protein" [	0.465	0.220	0.326	2.5e-10
UNIPROTKB|Q0BYV1	144	HNE_2660 "CBS domain protein"	0.414	0.847	0.286	5.5e-10

TAIR|locus:2167331 AT5G63490 "AT5G63490" [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 163/238 (68%), Positives = 202/238 (84%)

Query:    51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAE 110
             RTVK+LRLSKALT+P  T + +AC+RMASRRVDA+LLTD+N +L GI+TDKDI TRVI++
Sbjct:    53 RTVKRLRLSKALTVPATTTIYEACKRMASRRVDALLLTDSNEMLCGILTDKDIATRVISQ 112

Query:   111 GLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170
              L  ++T VSK+MT+NP+FV S++LA+EALQKMVQGKFRHLPVVENGEVIA+LDI KCLY
Sbjct:   113 ELNVEETPVSKVMTKNPMFVLSETLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLY 172

Query:   171 DAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKV 230
             DAI+RME+AAE+G AIAAAVEGVE+ WG+N S P  FIETLR+RMF+PSLSTII ++ KV
Sbjct:   173 DAIARMERAAEKGKAIAAAVEGVEKSWGTNTSVPNTFIETLRDRMFRPSLSTIIPDDTKV 232

Query:   231 AIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVE 288
               VSP+D V   AKKM EF+S+ A+++   K++GI TSKD+LMRVVA+NL P  TLVE
Sbjct:   233 LKVSPTDTVLTVAKKMVEFQSSCAVVIIEDKLRGIFTSKDILMRVVAENLPPSETLVE 290

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

ASPGD|ASPL0000033419 AN5716 [Emericella nidulans (taxid:162425)]

 Score = 411 (149.7 bits), Expect = 6.7e-38, P = 6.7e-38
 Identities = 92/240 (38%), Positives = 142/240 (59%)

Query:    52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
             TV  L+ S AL I   T +++A + MA++R D VL+TD +  ++GI T KD+  RV+  G
Sbjct:   107 TVLALKPSSALQIKPSTTIAEAAQLMAAKREDCVLVTDDDDRIAGIFTAKDLAFRVVGAG 166

Query:   112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLY 170
             L+     VS+IMT+NP+   +D+ A +AL  MV+  FRHLPV+ EN ++  +LDITKC Y
Sbjct:   167 LKARDITVSEIMTKNPLCARTDTSATDALDLMVRKGFRHLPVMDENQDISGVLDITKCFY 226

Query:   171 DAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYA-FIETLRERMFKPSLSTIITENAK 229
             DA+ ++E+A      +  A+EGV+ + GS+       ++E LR +M  P+L +++ +   
Sbjct:   227 DAMEKLERAYSSSRKLYDALEGVQSELGSSQPQQIIQYVEALRSKMSGPTLESVL-DGMP 285

Query:   230 VAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVER 289
                VS    V  AA  M+E  + + L+     I GI TSKD+++RV+A  L P    V R
Sbjct:   286 PTTVSVRTTVKEAAALMKEHHTTALLVQDQGSITGIFTSKDIVLRVIAPGLDPATCSVVR 345

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0003938 "IMP dehydrogenase activity" evidence=RCA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

CGD|CAL0003543 orf19.5238 [Candida albicans (taxid:5476)]

 Score = 306 (112.8 bits), Expect = 1.6e-26, P = 1.6e-26
 Identities = 74/229 (32%), Positives = 118/229 (51%)

Query:    65 PEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT 124
             P  T+  +  + M +RR + VL+ +    L GI T KD+  R++  GL   Q  +  IMT
Sbjct:    62 PTATVY-EVAQLMTARRENCVLVVNEIGELLGIFTAKDVAFRIVGSGLNATQVTIDTIMT 120

Query:   125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISRMEKAAEQG 183
             +NPI   +   A +AL  MV+  FRHLPV+ E  +++ +LDITK     + ++E+     
Sbjct:   121 KNPICANAADPAGDALNLMVERGFRHLPVLDEKSQIVGVLDITKSYAQQMEKLERMHSSS 180

Query:   184 SAIAAAVEGVERQWGSNFSAPYAF--IETLRERMFKPSLSTIITENAKVAIVSPSDPVAV 241
               +  A++ V  + G      + F   ETL+ +M  P+L   +  N     V+    V  
Sbjct:   181 KKLHEALDSVHNEIGVGEQPHHVFQYFETLKNKMNGPTLEDALDANTVPTYVNVKASVHE 240

Query:   242 AAKKMREFRSNSALIV-TGSKIQGILTSKDVLMRVVAQNLSPELTLVER 289
             A   M+E R+ + L+  T  ++ GI TSKDV++RV+A  L P+   V R
Sbjct:   241 ATMLMKENRTTAVLVKDTNEQVAGIFTSKDVVLRVIAAGLDPKKCSVVR 289

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPAC24C9.05c mug70 "conserved protein Mug20" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 245 (91.3 bits), Expect = 9.6e-20, P = 9.6e-20
 Identities = 54/155 (34%), Positives = 92/155 (59%)

Query:    52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
             TV    L  ALT+   ++V++  + MA++R + VL+ D +  L+GIVT  DI TR +  G
Sbjct:    64 TVDSAALDPALTVHMQSLVTETAQLMAAKRQNCVLVVDDDEQLAGIVTATDIATRCVGAG 123

Query:   112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV----------ENGEVIA 161
             L   QT+++ IM+ +P+ +TSD+   +AL  M++ KFRHLPVV          + G+VI 
Sbjct:   124 LNARQTLIADIMSTSPLCITSDTRFDDALLLMIEHKFRHLPVVSDGGPDGSAGDEGDVIG 183

Query:   162 ILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQ 196
             I+++  CL + ++R+ +  E    +  A+EG + +
Sbjct:   184 IINMRACLREPLNRIARQQEAAQKLVEALEGAQEE 218

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|Q5LRC8 SPO2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 158 (60.7 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 36/125 (28%), Positives = 68/125 (54%)

Query:    62 LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121
             +T+     V+ A   +A +R+  V+++D      GI++++DI   + A G       VS 
Sbjct:    16 VTVSAAATVAQAAAILAEKRIGTVVVSDDGETAQGILSERDIVRELAASGSGCLSEPVST 75

Query:   122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKCLYDAISRMEK 178
              MT++ I    D+   + L +M +G+FRH+PV+E G+++ ++   D+ K     ++ MEK
Sbjct:    76 YMTKDLITCGRDAKVQDVLSQMTEGRFRHMPVIEEGKLVGLVTLGDVVKAQLAELA-MEK 134

Query:   179 AAEQG 183
              A +G
Sbjct:   135 DALEG 139

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2201 SPO_2201 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 158 (60.7 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 36/125 (28%), Positives = 68/125 (54%)

Query:    62 LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121
             +T+     V+ A   +A +R+  V+++D      GI++++DI   + A G       VS 
Sbjct:    16 VTVSAAATVAQAAAILAEKRIGTVVVSDDGETAQGILSERDIVRELAASGSGCLSEPVST 75

Query:   122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKCLYDAISRMEK 178
              MT++ I    D+   + L +M +G+FRH+PV+E G+++ ++   D+ K     ++ MEK
Sbjct:    76 YMTKDLITCGRDAKVQDVLSQMTEGRFRHMPVIEEGKLVGLVTLGDVVKAQLAELA-MEK 134

Query:   179 AAEQG 183
              A +G
Sbjct:   135 DALEG 139

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 157 (60.3 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 41/131 (31%), Positives = 70/131 (53%)

Query:    53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL 112
             +K L+  +  TI    +V DA R MA + + A+ + + N ++ G+V+++D   +VI +G 
Sbjct:    10 LKDLQNQQVHTIGPDQMVLDALRLMAEKNIGALPVVEGNVVV-GVVSERDYARKVILKGR 68

Query:   113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQK-MVQGKFRHLPVVENGEVIAILDITKCLYD 171
                 T V +IM+   I V S   ++EA    M     RHLPVVE+G ++ +L I   + +
Sbjct:    69 SSVGTPVREIMSNKVITVDSQQ-SVEACMGIMTDSHLRHLPVVEDGRLLGLLSIGDLVKE 127

Query:   172 AISRMEKAAEQ 182
             AI+      +Q
Sbjct:   128 AIAEQASLIQQ 138

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EDA6 SO_2856 "Putative nucleotidyltransferase DUF294" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 171 (65.3 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 47/144 (32%), Positives = 74/144 (51%)

Query:    53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL 112
             +  L  S  +TI     V+ A   M + RV ++L+TD N  L GI+TDKD+  RV+A GL
Sbjct:   152 ISTLMSSSPITIDAHATVTQAALLMRNSRVSSLLVTD-NHKLVGILTDKDLRNRVLASGL 210

Query:   113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA 172
                Q  V + MT +PI ++S++L  EA+  M +    HLP+++        D  K +   
Sbjct:   211 -DGQIAVHQAMTTSPISISSNALIFEAMLLMSEHNIHHLPIIDEQNT----DEVKAI-GM 264

Query:   173 ISRMEKAAEQGSAIAAAVEGVERQ 196
             ++  +    QGS     +  +ERQ
Sbjct:   265 VTSTDILRGQGSQPLLLIGEIERQ 288

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2856 SO_2856 "CBS domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 171 (65.3 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 47/144 (32%), Positives = 74/144 (51%)

Query:    53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL 112
             +  L  S  +TI     V+ A   M + RV ++L+TD N  L GI+TDKD+  RV+A GL
Sbjct:   152 ISTLMSSSPITIDAHATVTQAALLMRNSRVSSLLVTD-NHKLVGILTDKDLRNRVLASGL 210

Query:   113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA 172
                Q  V + MT +PI ++S++L  EA+  M +    HLP+++        D  K +   
Sbjct:   211 -DGQIAVHQAMTTSPISISSNALIFEAMLLMSEHNIHHLPIIDEQNT----DEVKAI-GM 264

Query:   173 ISRMEKAAEQGSAIAAAVEGVERQ 196
             ++  +    QGS     +  +ERQ
Sbjct:   265 VTSTDILRGQGSQPLLLIGEIERQ 288

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q0BYV1 HNE_2660 "CBS domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 146 (56.5 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 35/122 (28%), Positives = 62/122 (50%)

Query:    60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVV 119
             + +T+     + +A R +  RR+ AV+  DA+  + G+++++DI  +   +G       V
Sbjct:    13 EVITLRADDTLREAARLLDERRIGAVVTLDADGEIVGVLSERDIVRQFARQGEGALDMPV 72

Query:   120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKA 179
                MTR  I +++D+   EALQ M   + RHLPVV N  +   + I   +   I+  +  
Sbjct:    73 GNAMTRAVITISADAEVDEALQLMTDRRIRHLPVVRNSRLTGFVSIGDLVKWKIAETQAE 132

Query:   180 AE 181
             AE
Sbjct:   133 AE 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LF97	Y3295_ARATH	No assigned EC number	0.7694	0.9829	0.5197	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G52950	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Octicosapeptide/Phox/Bem1p (InterPro-IPR000270), Cystathionine beta-synthase, core (InterPro-IPR000644); BEST Arabidopsis thaliana protein match is- CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (TAIR-AT2G36500.1); Has 4350 Blast hits to 3 [...] (556 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	BGLU12	BGLU12 (BETA GLUCOSIDASE 12); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl com [...] (507 aa)							•		0.790
	BGLU15	BGLU15 (BETA GLUCOSIDASE 15); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl com [...] (506 aa)							•		0.790
	AT5G27570	WD-40 repeat family protein; WD-40 repeat family protein; FUNCTIONS IN- signal transducer activ [...] (411 aa)							•		0.788
	BGLU14	BGLU14 (BETA GLUCOSIDASE 14); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl com [...] (489 aa)							•		0.788
	AT2G03270	DNA-binding protein, putative; DNA-binding protein, putative; FUNCTIONS IN- nucleoside-triphosp [...] (639 aa)							•		0.788
	AT5G27080	WD-40 repeat family protein; WD-40 repeat family protein; FUNCTIONS IN- signal transducer activ [...] (466 aa)							•		0.788
	BGLU13	BGLU13 (BETA GLUCOSIDASE 13); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl com [...] (507 aa)							•		0.748
	ARI1	ARI1 (ARIADNE); protein binding / zinc ion binding; ARIADNE (ARI1); FUNCTIONS IN- protein bindi [...] (597 aa)							•		0.744
	ARI3	zinc finger protein-related; zinc finger protein-related; FUNCTIONS IN- protein binding, zinc i [...] (537 aa)							•		0.679
	ARI4	zinc finger protein-related; zinc finger protein-related; FUNCTIONS IN- zinc ion binding; CONTA [...] (493 aa)							•		0.677

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	3e-46
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	4e-32
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-28
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	2e-22
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	3e-21
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-19
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	3e-19
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	8e-19
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	2e-17
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	7e-15
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	8e-14
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	1e-13
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	3e-13
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	4e-13
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	3e-12
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	9e-12
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	2e-11
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	5e-11
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	1e-09
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	2e-09
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	1e-08
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	2e-08
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	2e-08
pfam00571	57	pfam00571, CBS, CBS domain	3e-08
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	4e-08
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	9e-08
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	9e-08
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	2e-07
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	2e-07
cd04619	114	cd04619, CBS_pair_6, The CBS domain, named after h	2e-07
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	3e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	3e-07
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	3e-07
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	3e-07
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	5e-07
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	5e-07
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	1e-06
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-06
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	2e-06
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	2e-06
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	2e-06
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	3e-06
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	4e-06
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	4e-06
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	8e-06
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	8e-06
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	3e-05
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	5e-05
pfam00571	57	pfam00571, CBS, CBS domain	5e-05
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	6e-05
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	6e-05
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	8e-05
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	9e-05
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	1e-04
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-04
pfam00571	57	pfam00571, CBS, CBS domain	1e-04
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	1e-04
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-04
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	2e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	2e-04
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	2e-04
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	2e-04
PRK10892	326	PRK10892, PRK10892, D-arabinose 5-phosphate isomer	3e-04
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	4e-04
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	4e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	5e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	6e-04
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	8e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	8e-04
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	8e-04
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	9e-04
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	0.002
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	0.002
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	0.002
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	0.002
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	0.002
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	0.003
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.004
cd04594	104	cd04594, CBS_pair_EriC_assoc_archaea, This cd cont	0.004

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  151 bits (383), Expect = 3e-46
 Identities = 55/114 (48%), Positives = 77/114 (67%), Gaps = 2/114 (1%)

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTV 118
           +K  T+   T V +A + M  +RV  VL+ D N L  GI T KDI  RV+A+GL P+ T+
Sbjct: 1   TKPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKL-VGIFTSKDIALRVVAQGLDPESTL 59

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYD 171
           V ++MT NP+  TSD+  +EAL  MVQGKFRHLPVV ++G+V+ +LD+TK  + 
Sbjct: 60  VERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score =  114 bits (288), Expect = 4e-32
 Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 60  KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVV 119
             +T    T + +A R M   RV ++L+ D   L+ GIVTD+D+  RV+AEGL PD  V 
Sbjct: 2   PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLV-GIVTDRDLRNRVVAEGLDPDTPV- 59

Query: 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL 163
           S++MT  PI +  D+   EAL  M++    HLPVV++G ++ ++
Sbjct: 60  SEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVI 103

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  105 bits (265), Expect = 1e-28
 Identities = 40/104 (38%), Positives = 62/104 (59%)

Query: 62  LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121
           +T+     V++A + MA + + AV++ D    L GI +++DI  +V   G     T VS+
Sbjct: 4   ITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSE 63

Query: 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDI 165
           IMTRN I VT D    EA+  M + +FRHLPVV+ G+++ I+ I
Sbjct: 64  IMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDGGKLVGIVSI 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 89.2 bits (222), Expect = 2e-22
 Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 1/64 (1%)

Query: 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVE 288
           K A VSP+  V  AAK MRE R +  L++ G+K+ GI TSKD+ +RVVAQ L PE TLVE
Sbjct: 2   KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVE 61

Query: 289 RFIM 292
           R +M
Sbjct: 62  R-VM 64

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 51  RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAE 110
             V +++   A+T+     + DA R+M    V ++++ D +  L GIVT KD+ +RVIA+
Sbjct: 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIAD 208

Query: 111 GLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCL 169
           G R     VS++MT   I V       EA+  M++ + +HLPV E+G+ + IL +T  L
Sbjct: 209 G-RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDIL 266

Length = 610

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 81.8 bits (203), Expect = 1e-19
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           T+     + +A R M    V A+ + + + L+ GIVTD+DI  R +AEG  PD T V  +
Sbjct: 5   TVSPDDTIREAARLMREHDVGALPVCENDRLV-GIVTDRDIVVRAVAEGRDPDTTTVGDV 63

Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN-GEVIAIL 163
           MTR  + VT D    EA + M + + R LPVV++ G ++ I+
Sbjct: 64  MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIV 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 80.7 bits (200), Expect = 3e-19
 Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 6/111 (5%)

Query: 62  LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121
           +T+   T + +A + MA   V +V++ D +    GIVT++DI  R +A G+  D T VS+
Sbjct: 4   VTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIV-RAVAAGIDLD-TPVSE 61

Query: 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGE----VIAILDITKC 168
           IMTR+ + V  D    EA + M +   RH  VV+ G     VI+I D+ + 
Sbjct: 62  IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVRE 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 79.8 bits (197), Expect = 8e-19
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTV 118
              +T+     V++A R M    +  + + D +  L GIVT++D+  R +AEG       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL-RALAEGGLDPLVT 59

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDIT 166
           V  +MTR+ + V+ D+   EA + M++   R LPVV + G ++ I+  +
Sbjct: 60  VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRS 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 76.4 bits (189), Expect = 2e-17
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 64  IPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123
           +   T + DA   M+ + +    + D +  L GI TD D+  R + +GL      V+ +M
Sbjct: 7   VSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVM 65

Query: 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCL 169
           TRNP  +  D+LA EAL+ M + K   LPVV +NG  + +L I   L
Sbjct: 66  TRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLL 112

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 69.2 bits (170), Expect = 7e-15
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 8/120 (6%)

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI--------TTRVIAE 110
              +TI   T +++A   M   ++  + + D    L GIVTD+D+        TT    E
Sbjct: 1   RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHE 60

Query: 111 GLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170
                +  V +IMT++ I V       EA   M + +   LPVVE+G ++ I+  T  L 
Sbjct: 61  LYLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 66.1 bits (162), Expect = 8e-14
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 60  KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVV 119
             +TIPE T +++    +A    +   + D +  L GIV+  DI   ++ +    D  V 
Sbjct: 2   DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIRE-ILFDPSLYDLVVA 60

Query: 120 SKIMTRNPIFVT-SDSLAIEALQKMVQGKFRHLPVV--ENGEVIAIL 163
           S IMT+ P+ V   DSL  +AL+K     +  LPVV  + G+++ IL
Sbjct: 61  SDIMTKPPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGIL 106

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 66.0 bits (162), Expect = 1e-13
 Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 4/103 (3%)

Query: 62  LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121
           LT P  T +++A  RM  RR+ ++++ D    L GIVT++DI  R++A G    QT V +
Sbjct: 4   LTCPPDTSLAEAASRMRERRISSIVVVDDGRPL-GIVTERDIL-RLLASG-PDLQTPVGE 60

Query: 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL 163
           +M+   + V +D+   +A Q M +   RHL VV ++GE++ +L
Sbjct: 61  VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLL 103

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 64.8 bits (158), Expect = 3e-13
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 6/117 (5%)

Query: 53  VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL 112
           VK +     +T+   T V DA   M+   V AV + D   L+ GI+T++DI   + A G 
Sbjct: 1   VKDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLV-GIITERDILRALAAGGK 59

Query: 113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQG-KFRHLPVV--ENGEVIAILDIT 166
           R     V ++MT+  + V  D+   EAL+ MV+  K R LPVV  + G+++ I+ ++
Sbjct: 60  RLL--PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLS 114

Length = 117

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121
           TI     V++A + M    V ++++     +   GIVT +DI  +V+AEG  PD+  V +
Sbjct: 5   TIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYE 64

Query: 122 IMTRNPIFVTSDSLAIE-ALQKMVQGKFRHLPVVENGEVIAILDIT 166
           IMT+ P+   S  + I+   + M +   R  PVVEN E+I I+ +T
Sbjct: 65  IMTK-PLISVSPDMDIKYCARLMERTNIRRAPVVENNELIGIISLT 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 60  KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVV 119
             L +   T + DA R M     DA+L+ D +  L GIVT  D+    +     P  T V
Sbjct: 2   PPLIVDASTSIRDAARLMREHGADALLVRDGDPRL-GIVTRTDLL-DAVLLDGLPSSTPV 59

Query: 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDIT 166
            +I T   I V  D     AL  M + +   + V E GEV+ +L+ T
Sbjct: 60  GEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQT 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 60.5 bits (147), Expect = 9e-12
 Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 62  LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121
           +T+   T V +A   M    +  +++ D N    GI+T++D+  +V++  L+P +  V +
Sbjct: 4   ITVDPDTTVYEAANIMTENNIGRLIVVD-NEKPVGIITERDLVKKVVSRNLKPREVPVGE 62

Query: 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITK 167
           +M+   I +  ++   EA + M +   + LPVV++ E++ I+   DI  
Sbjct: 63  VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVM 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 60  KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVV 119
           K L +     + DA R++    +  VL+ D N  L G VTD DI  R + +GL  D  V 
Sbjct: 3   KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIR-RALLKGLSLDDPV- 60

Query: 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDI 165
           S++M RNPI     S   E L  M +   RHLP++ E G V+ +  +
Sbjct: 61  SEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATL 107

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG------- 111
              +T+     VS A R M    +  + + +   L+ GIVT+KDI   + +         
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLV-GIVTEKDIADALRSFRPLVRDRH 59

Query: 112 --LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL 163
              R     VS IMTR  I +  D+   +    M++     LPVV++G+++ I+
Sbjct: 60  QERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIV 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           T+P    V +    M   R     + D   L+ GIVT  DI  R +    R    +V  +
Sbjct: 5   TVPVDLTVDEVLALMFGERHRGYPVVDDGRLV-GIVTLADI--RRVPAEGREATVLVGDV 61

Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN-GEVIAIL 163
           MTR+P+  + D    +AL++M +     LPVV++ G ++ I+
Sbjct: 62  MTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIV 103

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 54.0 bits (131), Expect = 2e-09
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 228 AKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLV 287
                 SP   +  AA+ M E R +S L+V   ++ GI+T +D+  RVVA+ L P+  + 
Sbjct: 1   RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLDPDTPVS 60

Query: 288 ERFIM 292
           E  +M
Sbjct: 61  E--VM 63

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 12/110 (10%)

Query: 61  ALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVS 120
            +T+P GT   D    +   +V  V +   +  L GI+T KD+          P++  ++
Sbjct: 5   YVTLP-GT-RDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN-------PEEEQLA 55

Query: 121 KIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITK 167
            +MTR+P  V+ D    EA + MV+   R +PVV++G+++ I+   DI +
Sbjct: 56  LLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 37/154 (24%)

Query: 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGE-----VIAILDITKCLYDAISRMEKA 179
           ++ + V   +  +EA + MV+  FR LPVV+ G      +I   DI K  Y         
Sbjct: 1   KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILK--YLGGGEKFNK 58

Query: 180 AEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPV 239
            + G+ + A  E V                            +I+T N  V  ++P D +
Sbjct: 59  IKTGNGLEAINEPVR---------------------------SIMTRN--VITITPDDSI 89

Query: 240 AVAAKKMREFRSNSALIVTG-SKIQGILTSKDVL 272
             AA+ M E R     +V    K+ GI+T +D+L
Sbjct: 90  KDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 13/118 (11%)

Query: 60  KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ--- 116
             +T+   T + +A + M    +  + + D   L+ GIVTD+D+     ++    D    
Sbjct: 2   NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLV-GIVTDRDLKLASPSKATTLDIWEL 60

Query: 117 ------TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITK 167
                   VS IMTR+PI V+ D+   EA + M++ K   LPVV+  G ++ I  IT+
Sbjct: 61  YYLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGI--ITE 116

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYD 171
           V  IMT + + V  D+   EAL+ M +     LPVV E+G+++ I+   D+ + L +
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 35  SPQGESSSSVGGAGGERTVKK----LRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA 90
           S +  +S   GGA G + + K    ++ +    I   T   DA   M+ +R+ + ++ D 
Sbjct: 136 SQEDFASFHPGGALGRKLLVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE 195

Query: 91  NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRH 150
           N  L G+ TD D+   ++  G    ++ V   MT  P     D+L +EAL+ + + K   
Sbjct: 196 NNQLVGVFTDGDLRRALLGGGSL--KSEVRDFMTLGPKTFKLDALLLEALEFLERRKITS 253

Query: 151 LPVV-ENGEVIAIL 163
           L VV ++ +V+ +L
Sbjct: 254 LVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 62  LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121
             +   T + +A  ++   +  + L+ D +  + GI+T  D+  R +      + + V +
Sbjct: 4   PVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDL-LRALEADEAGEPSAVDE 62

Query: 122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL 163
           + T   + V  D     AL +M     R LPVV+ G    +L
Sbjct: 63  VATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVL 104

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 62  LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121
           LT+   T V+DA   M+ +   + +L      L GI T++DI  R+ A G       + +
Sbjct: 4   LTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDI-VRLTAIGKDLSDLPIGE 62

Query: 122 IMTRNPIFVTSDSL--AIEALQKMVQGKFRHLPVVENGE-VIAIL 163
           +MT+  + +    +     AL    Q + RHLPV+++   +I ++
Sbjct: 63  VMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLV 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 10/112 (8%)

Query: 62  LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ----- 116
           +T+   T + +A   +   R+ A+ + D +  L GIVT +D+      +G RP +     
Sbjct: 5   VTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRG 64

Query: 117 ----TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL 163
                 V  IM+   + V  D+   E +  +  G   H+PVV E+  ++ I+
Sbjct: 65  RDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIV 116

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTV 118
              +TI E   + +A + M    ++ + + D +  L GIVT  DI+ + +A   +     
Sbjct: 2   RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDIS-KAVARDKKS---- 56

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITK 167
           V  IMTRN I  T D     A +KM +     LPVV     VI I+   DI+K
Sbjct: 57  VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239991 cd04619, CBS_pair_6, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 73  ACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTV-VSKIMTRNPIFVT 131
           A + +    +D V++ D +  L+G++T  D+  R +     P  T  V  +MTR  +   
Sbjct: 15  AAKILGEPGIDLVVVCDPHGKLAGVLTKTDVV-RQMGRCGGPGCTAPVENVMTRAVVSCR 73

Query: 132 SDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDI 165
              L  +  Q M Q   +++PVV EN   + +L+ 
Sbjct: 74  PGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNA 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVE 288
            V  VSP D +  AA+ MRE    +  +    ++ GI+T +D+++R VA+   P+ T V 
Sbjct: 2   DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVG 61

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 33/151 (21%)

Query: 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDIT-KCLYDAISRMEKAAEQ 182
           R+ + +T  +   EAL+ M + K RHLPVV E G ++ I  +T + L DA          
Sbjct: 1   RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGI--VTDRDLRDA---------- 48

Query: 183 GSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVA 242
                           S F+      E     + K  +  I+T++  V  V P D V  A
Sbjct: 49  --------------SPSPFTT---LSEHELYLLLKMPVKEIMTKD--VITVHPLDTVEEA 89

Query: 243 AKKMREFRSNSALIVTGSKIQGILTSKDVLM 273
           A  MRE R     +V   ++ GI+T  D+L 
Sbjct: 90  ALLMREHRIGCLPVVEDGRLVGIITETDLLR 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 43/157 (27%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           V  IMT++ I V  D+   +AL  M +     +PVV++G+++ I  IT+           
Sbjct: 1   VKDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGI--ITE----------- 47

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
                  I  A+    ++                       +  ++T+   V  V P  P
Sbjct: 48  -----RDILRALAAGGKR--------------------LLPVKEVMTKP--VVTVDPDTP 80

Query: 239 VAVAAKKMREFRSNSALIVT---GSKIQGILTSKDVL 272
           +  A + M E      L V    G K+ GI+T  D+L
Sbjct: 81  LEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTV 118
           +   TI E   + +A   M     + +++ D    L G+VT  DI    + E     +  
Sbjct: 1   TDFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESFLEKK-- 58

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170
           V  I++++  +V  +    EAL  M + +   LPVV++ ++I ++     L 
Sbjct: 59  VFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDILD 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 47.1 bits (113), Expect = 5e-07
 Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 11/111 (9%)

Query: 62  LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK 121
           +T+     V++A   MA   +  + + D +  L GIVT++D+  R   +  +P    VS+
Sbjct: 5   ITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDL--RFETDLDKP----VSE 58

Query: 122 IMTRNPIFVTSDSLAIE-ALQKMVQGKFRHLPVV-ENGE---VIAILDITK 167
           +MT   +  T +  ++E AL+ + + K   LPVV + G+   +I + DI K
Sbjct: 59  VMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           T+   T++S+A   MA + + ++++ +   L+ G++T +++   +   G     T V  I
Sbjct: 5   TVAPETLLSEAVATMAEQDLGSLVVMERGELV-GLLTFREVLQAMAQHGAGVLDTTVRAI 63

Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL 163
           M   PI  + D    E  + MV+   R+LPV++ G ++ ++
Sbjct: 64  MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 21/126 (16%)

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTR------------ 106
           +  +T+   T V++A R M    +  + + D +  L GIV++ D+  R            
Sbjct: 2   TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARW 61

Query: 107 ---------VIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENG 157
                    + A  +R     V+ +MTR  + V  D+   E  + M + + + +PVV  G
Sbjct: 62  LDLLAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGG 121

Query: 158 EVIAIL 163
            ++ I+
Sbjct: 122 RLVGIV 127

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 41/150 (27%)

Query: 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISRMEKAAEQG 183
           R+ + V+ D    EAL+ M++     LPVV ++G ++ I+       D +  + +     
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTER----DLLRALAEG---- 52

Query: 184 SAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAA 243
                                   + T+ + M              V  VSP   +  AA
Sbjct: 53  --------------------GLDPLVTVGDVM-----------TRDVVTVSPDTSLEEAA 81

Query: 244 KKMREFRSNSALIVTGS-KIQGILTSKDVL 272
           + M E       +V    ++ GI+T  D+L
Sbjct: 82  ELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 24/104 (23%), Positives = 56/104 (53%), Gaps = 10/104 (9%)

Query: 65  PEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT 124
           P+ T+   A + M  ++VD++L+ D +  L GIV+ + +      +  +  ++ +  IM 
Sbjct: 9   PDRTLAE-AIKLMRDKKVDSLLVVDKDNKLLGIVSLESLE-----QAYKEAKS-LEDIML 61

Query: 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITK 167
            +   V  D+   + L  +++   +++PVV E+G+++ +  IT+
Sbjct: 62  EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGL--ITR 103

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTV 118
           S  + + E T V DA   +    V ++ + D +  L G+V+ KD+    I  G    +  
Sbjct: 1   SPPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIG-GADLQKVP 59

Query: 119 VSKIMTRNP--IFVTSDSLAIEALQKMVQGKFRHLPVVEN 156
           V  IMTR P     T +   +EA +K+++ +   LPVVE 
Sbjct: 60  VGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK 99

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 24/129 (18%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTV---- 118
           T+ +   + D    + + ++  V + D    + GIV++ D+  R I +G           
Sbjct: 5   TVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI-RKIYKGKGLFYVTLLYS 63

Query: 119 ----------------VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAI 162
                           V +IMT+  I V  D+   +  + M +   + LPVV++G+++ I
Sbjct: 64  VIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGI 123

Query: 163 L---DITKC 168
           +   DI + 
Sbjct: 124 ISRGDIIRS 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 18/115 (15%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANAL-LSGIVTDKDI-------------TTRVI 108
           T+P  T + +A + M       + + D     L GI+T  DI              T   
Sbjct: 5   TVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNG 64

Query: 109 AEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN-GEVIAI 162
            E +      V  IMTRN I +T D    +A + M++ +   LPVV++ G+++ I
Sbjct: 65  LEAI---NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGI 116

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 89  DANALLSGIVTDKDITTRVIAEGLRPDQT-VVSKIMTRNPIFVTSDSLAIEALQKMVQGK 147
           D N  L G ++++D   +++      D    V  IMT   + V+ D   ++  Q M++ K
Sbjct: 31  DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAK 90

Query: 148 FRHLPVVENGEVIAIL 163
            +  PVV++G+++  +
Sbjct: 91  PKRYPVVDDGKLVGQI 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 10/69 (14%)

Query: 96  GIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVT-SDSLAIEALQKMVQGKFRHLPVV 154
           GIVT KD+  +          T + K+MT+NPI V    S+A  A   M+      LPVV
Sbjct: 39  GIVTSKDVAGK-------DPDTTIEKVMTKNPITVNPKTSVASVA-HMMIWEGIEMLPVV 90

Query: 155 -ENGEVIAI 162
            +N +++ I
Sbjct: 91  DDNKKLLGI 99

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 44/153 (28%)

Query: 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGS 184
            + + V  D    E L  M   + R  PVV++G ++ I+ +                   
Sbjct: 1   PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTL------------------- 41

Query: 185 AIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAK 244
              A +  V                T+                      SP + +  A K
Sbjct: 42  ---ADIRRVP---------AEGREATVLVGDVM---------TRDPVTASPDETLRDALK 80

Query: 245 KMREFRSNSALIVT--GSKIQGILTSKDVLMRV 275
           +M E R    L V     ++ GI++  D L+R 
Sbjct: 81  RMAE-RDIGRLPVVDDSGRLVGIVSRSD-LLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI-------TTRVIAEGLRPD 115
           T+ E   ++DA   M   R+  + + + +  L G++T +D+        +    E L  +
Sbjct: 5   TLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKE 64

Query: 116 QTV-VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN-GEVIAIL 163
           + V V+++M  + + VT D+   EA + MV+ K   LPVV++ G ++ I+
Sbjct: 65  RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 60  KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVV 119
             +TI     V  A R M   R+  + + + +  L GI+T +D+          P++ V 
Sbjct: 2   DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDV------RRAHPNRLVA 54

Query: 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL 163
              MTR  + ++ ++  +EA + M + K   LPV+   +++ I+
Sbjct: 55  D-AMTREVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGII 97

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVT--GSKIQGILTSKDVLMRVVAQNLSPELTL 286
            V  V P   VA AAK M E     A++V   G ++ GI + +D++ +V  +  S   T 
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNI-GAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTP 60

Query: 287 VE 288
           V 
Sbjct: 61  VS 62

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 53  VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI 103
           VK +     +T+P  T + +A   M    +  + + D +  L GIVT +D+
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDL 51

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTG-SKIQGILTSKDVLMRVVAQNLSPELTLV 287
            V  VSP D VA A + M E   +   +V    ++ GI+T +D L+R +A+     L  V
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERD-LLRALAEGGLDPLVTV 60

Query: 288 ERFIMR 293
              + R
Sbjct: 61  GDVMTR 66

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 11/110 (10%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           T+   T +++A   MA   +  V + D N  L GI+T++D+  R         Q  VS++
Sbjct: 99  TVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDV--RFET---DLSQP-VSEV 152

Query: 123 MTRNPIFVTSDSLAI-EALQKMVQGKFRHLPVV-ENGE---VIAILDITK 167
           MT+  +    +   + EAL+ + + +   LPVV +NG    +I + DI K
Sbjct: 153 MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEK 202

Length = 486

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTV 118
            K   +   T ++ A   M +    A+ + D    L GI+T  D+ +  +      D   
Sbjct: 1   MKPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKD-AK 59

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN-GEVIAI 162
           V ++M    I + ++    +A   M       LPV+++ G+V  I
Sbjct: 60  VREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGI 104

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 17/139 (12%)

Query: 62  LTIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ 116
           +T+PE   V +A  R+  R      +  + + D    L G+V+ +D+   + AE   PD+
Sbjct: 143 VTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDL---LTAE---PDE 196

Query: 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISR 175
            +   +M  + + V +D    E  +   +     +PVV E+  +I I+ I     D I  
Sbjct: 197 LL-KDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITID----DIIDV 251

Query: 176 MEKAAEQGSAIAAAVEGVE 194
           +E+ A +     A    V 
Sbjct: 252 IEEEATEDILRMAGPLDVP 270

Length = 451

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 230 VAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTL 286
           +    P   +A AA +MRE R +S ++V   +  GI+T +D+L R++A     +  +
Sbjct: 3   ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDIL-RLLASGPDLQTPV 58

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVE 288
            V  V P   V  A   M E   ++  +V   K+ GI+T +D ++R +A      L + E
Sbjct: 8   DVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERD-ILRALAAGGKRLLPVKE 66

Query: 289 RFIMR 293
             +M 
Sbjct: 67  --VMT 69

Length = 117

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVV 276
            V  V P   +  A + MRE   +   +V    K+ GI+T +D+L  ++
Sbjct: 8   DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALL 56

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL 163
           +  V  IMT+  I ++ D+   +A + MV+ K + LPVVE+G ++ I+
Sbjct: 88  KMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIV 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 35/151 (23%)

Query: 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKCLYDAISRMEKAAE 181
           +  I V+ D     A + M+      LPV+E G+++ I+   DI   L      +     
Sbjct: 1   KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRD--- 57

Query: 182 QGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAV 241
                                           R+    +S I+T    V  + P   V+ 
Sbjct: 58  ---------------------------RHQERRIRNLPVSDIMTRP--VITIEPDTSVSD 88

Query: 242 AAKKMREFRSNSALIVTGSKIQGILTSKDVL 272
            A  M E       +V   K+ GI+T  D+L
Sbjct: 89  VASLMLENNIGGLPVVDDGKLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 30/149 (20%)

Query: 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGS 184
           +NPI VT D+  +EAL+ M +   R LPVV+ G+++ I  +T          ++  +  S
Sbjct: 1   KNPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGI--VT----------DRDLKLAS 48

Query: 185 AIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAK 244
              A                   I  L   + K  +S I+T +     VSP   V  AA+
Sbjct: 49  PSKATTLD---------------IWELYYLLSKIKVSDIMTRD--PITVSPDASVEEAAE 91

Query: 245 KMREFRSNSALIVTGS-KIQGILTSKDVL 272
            M E + +   +V    ++ GI+T  D+ 
Sbjct: 92  LMLERKISGLPVVDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 230 VAIVSPSDPVAVAAKKMREFRSNSALIVTG-SKIQGILTSKDVL 272
           V  VSP   +  A + +RE       +V    ++ GI+T +D++
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 13/90 (14%)

Query: 85  VLLTDANALLSGIVTDKDITTRVIAEGLR----------PDQTVVSKIMTRNPIFVTSDS 134
           +L+ + N L+ G+++D+D   + I+  L                  +IMTR+PI V+ D+
Sbjct: 27  LLVVEDNELV-GVISDRDYL-KAISPFLGTAGETEKDLATLNRRAHQIMTRDPITVSPDT 84

Query: 135 LAIEALQKMVQGKFRHLPVV-ENGEVIAIL 163
              EA + +++     LPVV ENG++I I+
Sbjct: 85  PVDEASKLLLENSISCLPVVDENGQLIGII 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
            VK L   K +T+     + +A +    + +    + D +  + GI+T  DI  + IA G
Sbjct: 173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD-DDKIVGIITLSDIA-KAIANG 230

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCL 169
              D  V S  M +N I +  D    +A++ M +     L V + NG+ + I+  T  L
Sbjct: 231 -NLDAKV-SDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDIL 287

Length = 294

>gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 72  DACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVT 131
           DA   +  + +   ++ D N  + GI TD D+  RV   G+   Q  ++ +MT   I V 
Sbjct: 225 DALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPGGIRVR 283

Query: 132 SDSLAIEALQKMVQGKFRHLPVVENGEVIAIL 163
              LA++AL  M       + V +   ++ +L
Sbjct: 284 PGILAVDALNLMQSRHITSVLVADGDHLLGVL 315

Length = 326

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 13/109 (11%)

Query: 63  TIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQT 117
            + E   V +A   +         +  + + D    L G+V+ +D+   ++A       T
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDL---LLA----DPDT 53

Query: 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDI 165
            VS IM  + I V++D    E  +   +     LPVV E G ++ I+ +
Sbjct: 54  PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITV 102

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDIT------TRVIAEGLRPDQ 116
           T+   T +  A + +   R+ A+ + D +  L GIVT +D+              LRP  
Sbjct: 257 TVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPT 316

Query: 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL 163
             V  IMT   + V  D+ A+E + ++       LPV+   G+++ I+
Sbjct: 317 --VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIV 362

Length = 382

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 60  KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVV 119
             +T+     + +A R   +  +    + D   L+ GIVT  DI    IA GL  +   V
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLV-GIVTLSDIA-HAIARGL--ELAKV 57

Query: 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVI 160
             +MT++ I +  D    +A++ M +     L V ++    
Sbjct: 58  KDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRP 98

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 53/154 (34%)

Query: 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDAISRMEKA 179
           +R  + ++ D+   EA + M++    HLPVV E+G ++ I+   DI+K    A++R +K 
Sbjct: 1   SRPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISK----AVARDKK- 55

Query: 180 AEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPV 239
                                                  S+  I+T N  V   +P +P+
Sbjct: 56  ---------------------------------------SVEDIMTRN--VITATPDEPI 74

Query: 240 AVAAKKMREFRSNSALIVTGS--KIQGILTSKDV 271
            VAA+KM      SAL V  +  ++ GI+TS+D+
Sbjct: 75  DVAARKMERHNI-SALPVVDAENRVIGIITSEDI 107

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 29/159 (18%)

Query: 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGS 184
           +NPI   +D    +A + + + K    PV++ G+++ I+  +    D +  +      G+
Sbjct: 1   KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSES----DILKLLVTHDPSGN 56

Query: 185 AIAAAVEGVERQWGSNFSAPYAFIET-LRE--------RMFKPSLSTIITE--NAKVAIV 233
                             +P   IE  LRE        R    +    + +    KV  +
Sbjct: 57  LW--------------LPSPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITI 102

Query: 234 SPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272
           SP   +  AA+ M   +     +V   ++ GI+T  D++
Sbjct: 103 SPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII 141

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLY 170
           + + V+ D+   EAL+ + +   R LPVV E G ++ I+   DI K L 
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 9/137 (6%)

Query: 42  SSVGGAGGERTVKK----LRLSKALT-IPEGTIVSDACRRMASRRVDAVLLTDANALLSG 96
           S   GA G R + K    +R   A+  +     V DA   ++   +  V + DA   + G
Sbjct: 185 SHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQG 244

Query: 97  IVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-E 155
           + TD D+   ++  G       V++ MTR    + + S AI+A + +++ K    PVV E
Sbjct: 245 VFTDGDLRRWLVGGGALTTP--VNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE 302

Query: 156 NGEVIAILDITKCLYDA 172
           NG++   +++    Y A
Sbjct: 303 NGKLTGAINLQD-FYQA 318

Length = 321

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 230 VAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVER 289
           V  V P   V  AA  M E      ++V   K  GI+T +D++ +VV++NL P    V  
Sbjct: 3   VITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGE 62

Query: 290 FIMR 293
            +  
Sbjct: 63  VMST 66

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 193 VERQWGSNFSA-PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRS 251
             R              E          +  + T  A    VSP   +  AA+KM++   
Sbjct: 123 FLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLPA--VTVSPQASIQDAARKMKDEGV 180

Query: 252 NSALIVTGS-KIQGILTSKDVLMRVVAQNLSPELTLVE 288
           +S +++  S  + GI+T KD+  RV+A   S    + E
Sbjct: 181 SSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSE 218

Length = 610

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 39/147 (26%)

Query: 131 TSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDAISRMEKAAEQGSAI 186
             DSLA +A + M + + RHLPVV E+G+++ +L   D+ +    A+S +    E+    
Sbjct: 8   EDDSLA-DAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRA---ALSSLSDNGEESLTK 63

Query: 187 AAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKM 246
              V                    + E M              V  V+P  P+  AA+ M
Sbjct: 64  ERDV-------------------PVAEVM-----------KTDVLTVTPDTPLREAAEIM 93

Query: 247 REFRSNSALIVTGSK-IQGILTSKDVL 272
            E +     +V     + GI+T  D L
Sbjct: 94  VENKIGCLPVVDDKGTLVGIITRSDFL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI 103
           T+   T + +A   +    +  + + D    L GIVT +DI
Sbjct: 4   TVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDI 44

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 30/151 (19%)

Query: 128 IFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISRMEKAAEQGSAI 186
           I V  D    +A+  + +     LPVV +NG++  I+      +D +             
Sbjct: 4   ITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIV----TRHDIVDF----------- 48

Query: 187 AAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKM 246
              V   ++    + S         +ERM    +   +  ++ V   SP+D V  A  +M
Sbjct: 49  --VVRDRDKARTGDRSGE-------KERMLDLPVYDAM--SSPVITASPNDSVRDAVDRM 97

Query: 247 REFRSNSALIVTG---SKIQGILTSKDVLMR 274
            E   +S ++VT    +K+ GILT KDVL  
Sbjct: 98  LENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           T+     + +A   +      A+ + +   ++ GI++ +D+  + +  GL      V   
Sbjct: 6   TVRPEATIEEARELLLRYGHTALPVVEGGRVV-GIISRRDVE-KALRHGLGHAP--VKDY 61

Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAI 162
           M+ + + V  D+   E  + MV+     +PVVE+G ++ I
Sbjct: 62  MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGI 101

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAE 110
            V        +TI E   + DA R M    V  +L+TD+N    GI+T  DI TR+   
Sbjct: 235 KVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAGL 293

Length = 294

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 50  ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI 103
             TV  +     +T+   T + +A   M    +  + + D    L GIVT  DI
Sbjct: 57  LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239967 cd04594, CBS_pair_EriC_assoc_archaea, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 70  VSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF 129
           V +A R M    + ++ + D N  L G V  KDI               V   + R   +
Sbjct: 12  VYEAKRIMIENDLLSLPVVDYNKFL-GAVYLKDIENA--------TYGDVVDYIVRGIPY 62

Query: 130 VTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDI 165
           V   S A EA + M++ K R  PVV++G+   I+ +
Sbjct: 63  VRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTL 98

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
COG2524	294	Predicted transcriptional regulator, contains C-te	99.82
COG2524	294	Predicted transcriptional regulator, contains C-te	99.79
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.77
COG3620	187	Predicted transcriptional regulator with C-termina	99.75
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.71
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.7
COG3620	187	Predicted transcriptional regulator with C-termina	99.7
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.7
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.67
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.66
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.65
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.64
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.64
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.64
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.64
COG2905	610	Predicted signal-transduction protein containing c	99.64
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.64
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.63
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.62
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.6
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.6
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.59
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.59
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.59
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.58
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.58
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.58
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.58
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.58
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.58
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.57
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.57
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.57
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.57
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.57
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.57
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.57
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.57
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.56
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.56
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.56
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.56
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.56
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.56
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.55
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.55
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.55
COG4109	432	Predicted transcriptional regulator containing CBS	99.55
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.55
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.55
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.55
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.55
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.55
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.55
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.55
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.55
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.54
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.54
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.54
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.54
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.54
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.54
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.53
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.53
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.53
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.53
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.53
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.53
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.53
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.52
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.52
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.52
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.52
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.51
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.51
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.51
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.51
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.51
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.51
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.51
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.51
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.51
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.51
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.5
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.5
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.5
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.5
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.5
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.5
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.5
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.5
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.5
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.5
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.49
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.49
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.49
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.49
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.49
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.49
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.49
PRK11573	413	hypothetical protein; Provisional	99.48
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.48
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.48
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.48
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.47
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.47
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.47
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.47
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.47
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.47
COG2905	610	Predicted signal-transduction protein containing c	99.47
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.47
COG0517	117	FOG: CBS domain [General function prediction only]	99.47
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.47
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.46
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.46
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.46
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.46
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.46
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.46
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.46
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.46
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.46
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.45
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.45
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.45
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.45
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.45
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.45
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.45
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.45
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.44
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.44
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.44
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.44
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.44
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.44
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.44
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.43
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.43
COG4109	432	Predicted transcriptional regulator containing CBS	99.43
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.43
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.42
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.42
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.42
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.42
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.42
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.42
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.42
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.41
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.4
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.4
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.4
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.39
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.39
COG0517	117	FOG: CBS domain [General function prediction only]	99.39
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.38
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.38
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.37
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.37
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.37
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.36
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.36
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.36
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.36
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.35
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.35
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.34
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.34
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.34
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.32
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.32
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.31
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.31
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.29
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.27
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.24
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.23
PRK11573	413	hypothetical protein; Provisional	99.22
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.2
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.19
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.08
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.04
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.96
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.9
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.87
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.83
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.78
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.71
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.69
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.67
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.53
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.51
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.48
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.48
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.23
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.22
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.04
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.01
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.01
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.94
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.62
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.09
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	96.74
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	96.7
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.48
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.88
KOG2118	498	consensus Predicted membrane protein, contains two	94.21
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.04
KOG2118	498	consensus Predicted membrane protein, contains two	87.35

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.82  E-value=1.6e-19  Score=146.98  Aligned_cols=122  Identities=25%  Similarity=0.342  Sum_probs=112.0

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP  127 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  127 (294)
                      -.+.+|+++|+++++++.+++|+.||.++|.++++++.||+|++ +++|++|.+|+. ..+.++ .. ..+|+++|.+++
T Consensus       169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~-~aia~g-~~-~~kV~~~M~k~v  244 (294)
T COG2524         169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIA-KAIANG-NL-DAKVSDYMRKNV  244 (294)
T ss_pred             cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHH-HHHHcC-Cc-cccHHHHhccCC
Confidence            45778999999999999999999999999999999999999965 999999999996 455555 33 679999999999


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                      +++.+++.+.+|+++|..+++.++.|+| +|+++|++|+.|++..+.
T Consensus       245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence            9999999999999999999999999999 999999999999998654

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.79  E-value=9.4e-19  Score=142.51  Aligned_cols=124  Identities=19%  Similarity=0.313  Sum_probs=112.1

Q ss_pred             CCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       113 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      .....+++++|.++++++.+++++.++..+|.+++++..||+|+++++|++|..|+.+++..                  
T Consensus       168 siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~------------------  229 (294)
T COG2524         168 SIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIAN------------------  229 (294)
T ss_pred             ecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHc------------------
Confidence            45577999999999999999999999999999999999999997799999999999765433                  


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                                           -.+...++++|.+  ++++++.|+.+.+|+++|..+++.++.|+| +|+++|+||++||
T Consensus       230 ---------------------g~~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDI  286 (294)
T COG2524         230 ---------------------GNLDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDI  286 (294)
T ss_pred             ---------------------CCccccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHH
Confidence                                 1345679999987  999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHH
Q 041090          272 LMRVVA  277 (294)
Q Consensus       272 l~~~~~  277 (294)
                      |+++..
T Consensus       287 L~~ia~  292 (294)
T COG2524         287 LTRIAG  292 (294)
T ss_pred             HHHhhc
Confidence            977654

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.77  E-value=3.6e-18  Score=141.62  Aligned_cols=130  Identities=22%  Similarity=0.323  Sum_probs=115.0

Q ss_pred             CCCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH----HHcCCCCccccccc
Q 041090           46 GAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRV----IAEGLRPDQTVVSK  121 (294)
Q Consensus        46 ~~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~----~~~~~~~~~~~v~~  121 (294)
                      |....++..|+|+++++++..++++.+|.++|.+++++.+||+|++.+++|+++.+|++...    ++.-......+++.
T Consensus       240 R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~  319 (382)
T COG3448         240 RRMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKG  319 (382)
T ss_pred             HHhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccc
Confidence            34566789999999999999999999999999999999999999999999999999997521    11112344678999


Q ss_pred             ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090          122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR  175 (294)
Q Consensus       122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~  175 (294)
                      +|+.+..++.++++..+++-.+...+.|++||+| +|+++||||+.|++..+.++
T Consensus       320 imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~  374 (382)
T COG3448         320 IMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN  374 (382)
T ss_pred             cccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 99999999999999887764

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.75  E-value=1.4e-17  Score=126.02  Aligned_cols=121  Identities=18%  Similarity=0.197  Sum_probs=109.2

Q ss_pred             cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090           49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI  128 (294)
Q Consensus        49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  128 (294)
                      ..++++.+|..+++++.+++++.+|+++|.+++++.+||+++ ++++|-+|..+|.+..+....+....++.++|..+++
T Consensus        63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP  141 (187)
T COG3620          63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFP  141 (187)
T ss_pred             ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCC
Confidence            568899999999999999999999999999999999999996 8999999999998777666677778899999999999


Q ss_pred             EEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHH
Q 041090          129 FVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA  172 (294)
Q Consensus       129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~  172 (294)
                      ++++++++..+.+++..+.  .+.|+++|+++|+||..|+++..
T Consensus       142 ~Vs~~~~l~vI~~LL~~~~--AVlV~e~G~~vGIITk~DI~k~~  183 (187)
T COG3620         142 TVSPDESLNVISQLLEEHP--AVLVVENGKVVGIITKADIMKLL  183 (187)
T ss_pred             cCCCCCCHHHHHHHHhhCC--eEEEEeCCceEEEEeHHHHHHHH
Confidence            9999999999988887544  67788899999999999998754

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.71  E-value=3.5e-17  Score=135.79  Aligned_cols=132  Identities=20%  Similarity=0.346  Sum_probs=112.4

Q ss_pred             CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      ..+.++.++|++++++++.++++.++.+.+.++++..+||+| +.+++|+|++.|+++....                  
T Consensus       242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~------------------  303 (382)
T COG3448         242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARP------------------  303 (382)
T ss_pred             hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCc------------------
Confidence            346789999999999999999999999999999999999999 8899999999999864322                  


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                                   ..++.++ .+....++.+|+.  ++.++.++++..+.+-.+.+.+.|++||+| +|+++||||+.|+
T Consensus       304 -------------~p~qrlr-~~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDl  367 (382)
T COG3448         304 -------------SPFQRLR-FLRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDL  367 (382)
T ss_pred             -------------chHHHhh-ccCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHH
Confidence                         1122222 3445779999977  999999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHccC
Q 041090          272 LMRVVAQNL  280 (294)
Q Consensus       272 l~~~~~~~~  280 (294)
                      +.. ++++.
T Consensus       368 iaa-l~r~~  375 (382)
T COG3448         368 IAA-LYRNW  375 (382)
T ss_pred             HHH-HHHHH
Confidence            944 44433

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.70  E-value=3.6e-16  Score=147.71  Aligned_cols=211  Identities=19%  Similarity=0.258  Sum_probs=140.9

Q ss_pred             ccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC----Cccccccccc--
Q 041090           50 ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR----PDQTVVSKIM--  123 (294)
Q Consensus        50 ~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~----~~~~~v~~~~--  123 (294)
                      ..+|+|+|.++++++++++++.+|+++|.+++++.+||+|++|+++|+++..|+.+.++.....    ....++.++.  
T Consensus        67 ~~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~  146 (546)
T PRK14869         67 KPQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRT  146 (546)
T ss_pred             CCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHh
Confidence            4689999999999999999999999999999999999999999999999999998655543210    0011111111  


Q ss_pred             -ccCCeEEcCC------------CcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHH--hhchhHHH
Q 041090          124 -TRNPIFVTSD------------SLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAA--EQGSAIAA  188 (294)
Q Consensus       124 -~~~~~~v~~~------------~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~--~~~~~~~~  188 (294)
                       ...++.-..+            +....+++.+.           .|.++=+.++.|++..++.......  +.+...+.
T Consensus       147 L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~-----------~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~  215 (546)
T PRK14869        147 LDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIE-----------EGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSE  215 (546)
T ss_pred             cCcEEEecCcccccccccEEEEEcCHHHHHHhcc-----------CCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCH
Confidence             1111111000            00111111111           1112222344444443333221111  22333333


Q ss_pred             HHHHHHHhhCCC-CCChhhhHHHHHHhhcccchhhhhh-cCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEe
Q 041090          189 AVEGVERQWGSN-FSAPYAFIETLRERMFKPSLSTIIT-ENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGI  265 (294)
Q Consensus       189 ~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGi  265 (294)
                      .+..+++..|+. +..+.+.+.+........++.++|. +  ++.++++++++.++.+.|.+.+++.+||+| +|+++|+
T Consensus       216 ~v~~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGi  293 (546)
T PRK14869        216 DVLELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGV  293 (546)
T ss_pred             HHHHHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEE
Confidence            333444455544 5566678888888888999999997 6  899999999999999999999999999999 8999999


Q ss_pred             eehhHHHH
Q 041090          266 LTSKDVLM  273 (294)
Q Consensus       266 vt~~Dil~  273 (294)
                      ||++|+++
T Consensus       294 it~~dl~~  301 (546)
T PRK14869        294 ISRYHLLS  301 (546)
T ss_pred             EEHHHhhc
Confidence            99999994

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.70  E-value=2.3e-16  Score=119.38  Aligned_cols=120  Identities=21%  Similarity=0.364  Sum_probs=105.3

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER  195 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (294)
                      ..++..+|..+.+.+.+++++.+++++|.+++++.+||+++++++|-||..++.+...+..                   
T Consensus        64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~-------------------  124 (187)
T COG3620          64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGM-------------------  124 (187)
T ss_pred             eEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccc-------------------
Confidence            6688999999999999999999999999999999999999999999999999988766532                   


Q ss_pred             hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHH
Q 041090          196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRV  275 (294)
Q Consensus       196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~  275 (294)
                                       +..+...++++|..  ..++|++++++..+-+++..+  .++.|+++|+++||||+.||++.+
T Consensus       125 -----------------e~i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~k~~  183 (187)
T COG3620         125 -----------------ESIRSLRVREVMGE--PFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIMKLL  183 (187)
T ss_pred             -----------------cchhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHHHHH
Confidence                             22345679999988  999999999999999988765  468888999999999999999543

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.70  E-value=3.9e-16  Score=138.42  Aligned_cols=122  Identities=21%  Similarity=0.324  Sum_probs=109.2

Q ss_pred             cccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090           49 GERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN  126 (294)
Q Consensus        49 ~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  126 (294)
                      ..++|+|+|.+  +++++++++|+.+|++.|.+++.+.+||+|++|+++|++|.+|+. .....+......++.++|.++
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~  278 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG  278 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence            66789999997  899999999999999999999988889999899999999999996 455444344456899999999


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYD  171 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~  171 (294)
                      ++++.+++++.++++.|.+++++++||+++++++|+++..|++++
T Consensus       279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~  323 (326)
T PRK10892        279 GIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA  323 (326)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence            999999999999999999999999999998899999999999864

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=2.2e-15  Score=112.62  Aligned_cols=111  Identities=32%  Similarity=0.422  Sum_probs=98.1

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE  138 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  138 (294)
                      ++.++.+++++.+|++.|.+++.+.+||+|++ ++++|+++.+|+++.+..........++.++|..++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY   81 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence            56789999999999999999999999999987 89999999999986565544344456788999888899999999999


Q ss_pred             HHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          139 ALQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       139 ~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      +++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus        82 ~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~  113 (114)
T cd04630          82 CARLMERTNIRRAPVVENNELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhc
Confidence            99999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=2.2e-15  Score=112.74  Aligned_cols=110  Identities=22%  Similarity=0.333  Sum_probs=96.4

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHHH
Q 041090           61 ALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEAL  140 (294)
Q Consensus        61 ~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~  140 (294)
                      +.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..|+++............++.++|..+++.+.+++++.+++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~   82 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVW   82 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHH
Confidence            56789999999999999999999999999999999999999997544332223335678999988999999999999999


Q ss_pred             HHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          141 QKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       141 ~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +.|.+++.+.+||++ +|+++|+++..|+++
T Consensus        83 ~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          83 QVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            999999999999999 789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.65  E-value=3e-15  Score=137.79  Aligned_cols=170  Identities=13%  Similarity=0.177  Sum_probs=133.8

Q ss_pred             CCcccchhccccCCceeecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccc
Q 041090           47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMAS-----RRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK  121 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~-----~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~  121 (294)
                      .+.+.+++++|++++++++++.|+.+|++.|.+     .+...++|+|++++++|+++.+|++.     .  ..+.++++
T Consensus       127 ~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~-----a--~~~~~v~~  199 (449)
T TIGR00400       127 SYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL-----A--KPEEILSS  199 (449)
T ss_pred             CCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc-----C--CCCCcHHH
Confidence            567788999999999999999999999999975     45678999998999999999999863     1  12457999


Q ss_pred             ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCC
Q 041090          122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSN  200 (294)
Q Consensus       122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  200 (294)
                      +|.++++++.+++++.++++.|.+++...+||+| +|+++|+||..|+++...+..                        
T Consensus       200 im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~------------------------  255 (449)
T TIGR00400       200 IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA------------------------  255 (449)
T ss_pred             HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh------------------------
Confidence            9998888999999999999999999999999999 899999999999997655421                        


Q ss_pred             CCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          201 FSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                                         .+++|..  ...+..+++.+..+...|.++++.+++|.   .+.|+++ ..++
T Consensus       256 -------------------~ed~~~~--~gv~~~~~~~l~~~~~~~~~~R~~wL~v~---~~~~~~t-~~ii  302 (449)
T TIGR00400       256 -------------------TEDFYMI--AAVKPLDDSYFDTSILVMAKNRIIWLLVL---LVSSTFT-ATII  302 (449)
T ss_pred             -------------------HHHHHHh--cCCCCCcchhhhchHHHHHHhccchHHHH---HHHHHHH-HHHH
Confidence                               1344432  33333345667777777777777777665   2445555 5554

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.64  E-value=3e-15  Score=132.47  Aligned_cols=120  Identities=23%  Similarity=0.303  Sum_probs=107.5

Q ss_pred             ccchhccccCC--ceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090           50 ERTVKKLRLSK--ALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP  127 (294)
Q Consensus        50 ~~~v~dl~~~~--~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  127 (294)
                      ..+|+++|.++  ++++++++++.+|.+.|.+++...+||+|++|+++|+++..|+.+.+ ..+... ..++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~-~~~~~~-~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWL-VGGGAL-TTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHH-hCCCCc-CCcHHHhcCCCC
Confidence            78999999998  99999999999999999999999999999999999999999996433 333222 456899999999


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD  171 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~  171 (294)
                      +++.+++++.++++.|.+++...+||++ +|+++|+++..|++++
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            9999999999999999999999999999 7899999999999864

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=5.6e-15  Score=111.53  Aligned_cols=111  Identities=18%  Similarity=0.187  Sum_probs=90.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccc------cccccCCeEEcCC
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVS------KIMTRNPIFVTSD  133 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~------~~~~~~~~~v~~~  133 (294)
                      ++.++++++++.+|++.|.+++.+.+||++++|+++|+++.+|++.....+........+.      +.|..++.++.++
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   81 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD   81 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence            5788999999999999999999999999999999999999999975432221111111222      2333456789999


Q ss_pred             CcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          134 SLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       134 ~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +++.++++.|.+++.+.+||++ +|+++|++|+.|+++
T Consensus        82 ~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            9999999999999999999999 689999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=2.9e-15  Score=109.12  Aligned_cols=93  Identities=18%  Similarity=0.264  Sum_probs=83.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE  138 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  138 (294)
                      +++++++++++.+|.+.|.+++++.+||+|++ |+++|++|..|+.+.+.                  +.++.+++++.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------~~~v~~~~~l~~   63 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------LVSIHPERSLFD   63 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------eEEeCCCCcHHH
Confidence            46789999999999999999999999999974 89999999999964221                  678999999999


Q ss_pred             HHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHH
Q 041090          139 ALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLY  170 (294)
Q Consensus       139 ~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~  170 (294)
                      +++.|.+++++++||++ + |+++|+++..|+++
T Consensus        64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          64 AALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            99999999999999999 6 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=9e-15  Score=108.78  Aligned_cols=111  Identities=36%  Similarity=0.569  Sum_probs=96.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++.++.++.++.++.+.|.++++..+||+|++++++|+++..|+++.+..........++.++|..++..+++++++.++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   81 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence            56788999999999999999999999999988999999999999765544333333457899998888999999999999


Q ss_pred             HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      ++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus        82 l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~  112 (113)
T cd04623          82 MALMTERRFRHLPVVDGGKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHcCCCEeEEEeCCEEEEEEEHHHhhc
Confidence            9999999999999998889999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.64  E-value=2e-15  Score=135.78  Aligned_cols=124  Identities=32%  Similarity=0.454  Sum_probs=116.7

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP  127 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  127 (294)
                      .-..+|+++++.+++++++.+|+.+|...|.+.|.+++.++++++...||+|.+|+...++.++.+. ..+|+++|+.++
T Consensus       146 ~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~  224 (610)
T COG2905         146 FILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPV  224 (610)
T ss_pred             HHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCc
Confidence            3446789999999999999999999999999999999999999999999999999998999888877 789999999999


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA  172 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~  172 (294)
                      +++..++-+.+|+-+|.+++++++||+++|+++|++|..|++...
T Consensus       225 ~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         225 ISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRLF  269 (610)
T ss_pred             eeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHHHhh
Confidence            999999999999999999999999999999999999999999754

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.64  E-value=1.8e-14  Score=132.24  Aligned_cols=119  Identities=23%  Similarity=0.324  Sum_probs=107.4

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP  127 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  127 (294)
                      .+..++.++|..+++++.+++++.+|+++|.+++++.+||+|++++++|++|.+|+. ..     .. ..++.++|..++
T Consensus        86 l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~-~~-----~~-~~~V~diMt~~~  158 (479)
T PRK07807         86 VAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA-GV-----DR-FTQVRDVMSTDL  158 (479)
T ss_pred             HhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh-cC-----cc-CCCHHHhccCCc
Confidence            456778999999999999999999999999999999999999999999999999994 11     22 357999999999


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                      +++++++++.++++.|.+++++.+||+| +++++|+||..|+++...
T Consensus       159 itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        159 VTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             eEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            9999999999999999999999999999 899999999999987543

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.63  E-value=8.7e-15  Score=108.98  Aligned_cols=108  Identities=16%  Similarity=0.166  Sum_probs=93.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++.++++++++.+|.+.|.+++.+.+||+|++|+++|+++..|+.+ ..  .......++.++|..++..+.+++++.++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~-~~--~~~~~~~~v~~~~~~~~~~v~~~~~l~~a   78 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLE-IG--PNDYETLKVCEVYIVPVPIVYCDSKVTDL   78 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHh-hc--cccccccChhheeecCCcEECCCCcHHHH
Confidence            4577899999999999999999999999998999999999999964 21  11222356889998888899999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|.+++.+.+||+| +|+++|++|..|+++
T Consensus        79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            9999999999999999 799999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=1.5e-14  Score=108.87  Aligned_cols=110  Identities=30%  Similarity=0.372  Sum_probs=94.6

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc--CCeEEcCCCcHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIFVTSDSLAI  137 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~  137 (294)
                      ++.++++++++.+|++.|.+++.+.+||+|++|+++|+++..|+++.... .......++.++|..  .+.++.+++++.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   80 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIG-GADLQKVPVGVIMTRMPNITTTTPEESVL   80 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHc-CCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence            56789999999999999999999999999988999999999999765442 333335568888864  678999999999


Q ss_pred             HHHHHHHhCCCcEEEEEE-C---CEEEEEEehHHHHH
Q 041090          138 EALQKMVQGKFRHLPVVE-N---GEVIAILDITKCLY  170 (294)
Q Consensus       138 ~~~~~~~~~~~~~~~V~~-~---~~~vGivt~~dll~  170 (294)
                      ++++.|.+++.+.+||++ +   ++++|++|..++++
T Consensus        81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            999999999999999999 5   69999999998863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.60  E-value=2.8e-14  Score=106.75  Aligned_cols=110  Identities=22%  Similarity=0.346  Sum_probs=95.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++..+.+++++.+|.+.|.+.+.+.+||+|++|+++|+++.+|+++... +.......++.++|...+.++.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE-ADEAGEPSAVDEVATPPLLTVHPDEPLAHA   80 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh-cccccccccHHHhccCCceEECCCCCHHHH
Confidence            5678899999999999999999999999999899999999999975443 333333445888888889999999999999


Q ss_pred             HHHHHhCCCcEEEEEE-C--CEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-N--GEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~--~~~vGivt~~dll~  170 (294)
                      ++.|.+++...+||++ +  |+++|+++..|+++
T Consensus        81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             HHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            9999999999999998 5  79999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.60  E-value=9.2e-15  Score=111.22  Aligned_cols=112  Identities=14%  Similarity=0.122  Sum_probs=95.4

Q ss_pred             CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090           59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE  138 (294)
Q Consensus        59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  138 (294)
                      +++.++.+++++.+|++.|.+++++.+||+|++|+++|+++..|+++.+..+.... ..++.++|.+++.++.+++++.+
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~-~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQP-SDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCC-CCcHHHHhhccceecCCCCCHHH
Confidence            46788999999999999999999999999998899999999999986555443333 57899999999999999999999


Q ss_pred             HHHHHH---------hCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090          139 ALQKMV---------QGKFRHLPVVE-NGEVIAILDITKCLYD  171 (294)
Q Consensus       139 ~~~~~~---------~~~~~~~~V~~-~~~~vGivt~~dll~~  171 (294)
                      +.+++.         ..+.+.+||++ +|+++|++|..|++.+
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             HHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            998653         23456777888 7999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.59  E-value=2.2e-14  Score=108.72  Aligned_cols=112  Identities=24%  Similarity=0.408  Sum_probs=96.6

Q ss_pred             CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC---------CCcccccccccccCCeE
Q 041090           59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL---------RPDQTVVSKIMTRNPIF  129 (294)
Q Consensus        59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~---------~~~~~~v~~~~~~~~~~  129 (294)
                      ++++++.+++++.++.+.|.+++++.+||++++|+++|+++..|++..+.....         .....++.++|...+++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   81 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVT   81 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCee
Confidence            477889999999999999999999999999988999999999999754332211         02344788999888999


Q ss_pred             EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +.+++++.++++.|.+.+.+.+||++ +|+++|+++..|++.
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          82 VRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             eCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            99999999999999999999999999 899999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=3.6e-14  Score=109.61  Aligned_cols=111  Identities=22%  Similarity=0.320  Sum_probs=95.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCC----------------------ccc
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRP----------------------DQT  117 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~----------------------~~~  117 (294)
                      ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..|+++.........                      ...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            4577899999999999999999999999999999999999999976543221110                      134


Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      ++.++|..++..+.+++++.++++.|.+.+.+.+||+++|+++|+++..++++
T Consensus        82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~  134 (135)
T cd04621          82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICR  134 (135)
T ss_pred             cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhh
Confidence            78899988888999999999999999999999999999899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.59  E-value=2.3e-14  Score=124.38  Aligned_cols=126  Identities=11%  Similarity=0.224  Sum_probs=108.4

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      ++.+.+|+++|++  +++++++++++.++++.+.+++++.+||++++ ++++|+++.+|++... ..+..  ...+.++|
T Consensus        63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~-~~~~~--~~~l~~l~  139 (292)
T PRK15094         63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM-RSDAE--AFSMDKVL  139 (292)
T ss_pred             ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh-hccCC--cCCHHHHc
Confidence            5788899999999  79999999999999999999999999999876 7899999999997433 22111  23578888


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRM  176 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~  176 (294)
                      . +++++++++++.++++.|.+++.+.++|+| .|.++|+||..|+++.+...+
T Consensus       140 r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei  192 (292)
T PRK15094        140 R-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEI  192 (292)
T ss_pred             C-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCC
Confidence            5 455899999999999999999999999999 789999999999999877643

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.58  E-value=2.1e-14  Score=130.38  Aligned_cols=122  Identities=12%  Similarity=0.207  Sum_probs=107.2

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      +..+.+|+|+|++  ++++++.++++.++++.+.+++++.+||++++ ++++|+++.+|++.+. .+    ...++.+++
T Consensus       187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~-~~----~~~~l~~~~  261 (408)
T TIGR03520       187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHL-NK----KNFDWQSLL  261 (408)
T ss_pred             ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHh-cc----CCCCHHHHc
Confidence            5678899999998  89999999999999999999999999999864 6899999999997532 21    134577887


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      . ++.++++++++.++++.|.+++.|.++|+| .|.++|+||.+|+++.+..
T Consensus       262 ~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       262 R-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             C-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhC
Confidence            5 678999999999999999999999999999 7999999999999987765

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=3.1e-14  Score=106.15  Aligned_cols=111  Identities=20%  Similarity=0.364  Sum_probs=96.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC-CCcccccccccccCCeEEcCCCcHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL-RPDQTVVSKIMTRNPIFVTSDSLAIE  138 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~-~~~~~~v~~~~~~~~~~v~~~~~l~~  138 (294)
                      ++.++.+++++.+|++.|.+++.+.+||++++++++|+++..|+++.+..... .....++.++|..++..+.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD   81 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence            56788999999999999999899999999999999999999999765543221 12356788999888889999999999


Q ss_pred             HHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          139 ALQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       139 ~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      +++.|.+.+.+.+||+++|+++|+++..++++
T Consensus        82 ~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~  113 (114)
T cd04629          82 LAQLMLKAKPKRYPVVDDGKLVGQISRRDVLR  113 (114)
T ss_pred             HHHHHHHhCCCccCEEECCEEEEEEEHHHHhc
Confidence            99999999999999999889999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.58  E-value=5.2e-14  Score=130.65  Aligned_cols=114  Identities=24%  Similarity=0.338  Sum_probs=102.8

Q ss_pred             chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc-cCCeEE
Q 041090           52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT-RNPIFV  130 (294)
Q Consensus        52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~~~~~v  130 (294)
                      .++++|.++++++++++++.+|+++|.+++++.+||+|++++++|+++.+|+.. .    .. ...++.++|. .+++++
T Consensus        88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~-~----~~-~~~~V~dim~~~~~v~v  161 (486)
T PRK05567         88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF-E----TD-LSQPVSEVMTKERLVTV  161 (486)
T ss_pred             hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh-c----cc-CCCcHHHHcCCCCCEEE
Confidence            577899999999999999999999999999999999999999999999999952 1    12 2457899998 688899


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD  171 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~  171 (294)
                      ++++++.++++.|.+++++.+||+| +|+++|++|..|+++.
T Consensus       162 ~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~  203 (486)
T PRK05567        162 PEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKA  203 (486)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhh
Confidence            9999999999999999999999999 8999999999999875

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=8.2e-14  Score=103.56  Aligned_cols=110  Identities=23%  Similarity=0.395  Sum_probs=93.4

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      .+.++.+++++.+|++.|.+++...++|.+ +|+++|+++.+|+++.+...+......++.++|...+.++.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a   80 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV   80 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence            467889999999999999888887787776 5999999999999765543322323457899998888899999999999


Q ss_pred             HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      ++.|.+++...+||+++|+++|++|..|++.
T Consensus        81 ~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~  111 (112)
T cd04625          81 RRLMVERHLRYLPVLDGGTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHHcCCCeeeEEECCEEEEEEEHHHhhc
Confidence            9999999999999999899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=4.2e-14  Score=105.80  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=91.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC-C---cccccccccccCCeEEcCCCc
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR-P---DQTVVSKIMTRNPIFVTSDSL  135 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~-~---~~~~v~~~~~~~~~~v~~~~~  135 (294)
                      +++++++++++.+|++.|.+++++.+||+|++|+++|+++..|+++.+...... .   ...++.++|..++.++.++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~   81 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDAD   81 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCC
Confidence            567899999999999999999999999999889999999999997544321111 1   135788999888999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          136 AIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       136 l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +.++++.|.+.+  .+||++ +|+++|++|..|+++
T Consensus        82 l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          82 IEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             HHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            999999998754  589998 799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.58  E-value=3.3e-14  Score=135.11  Aligned_cols=126  Identities=19%  Similarity=0.198  Sum_probs=110.6

Q ss_pred             CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090           47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN  126 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  126 (294)
                      ..+.++|+|+|.+++..+++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+.+..+. .....++.++|.++
T Consensus       443 ~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~-~~~~~~v~dim~~~  521 (574)
T PRK01862        443 RLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR-DTTDKTAADYAHTP  521 (574)
T ss_pred             HHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc-ccccchHHHhccCC
Confidence            46788999999999999999999999999999999999999999999999999999975443322 22245789999988


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C--CEEEEEEehHHHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-N--GEVIAILDITKCLYDAI  173 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--~~~vGivt~~dll~~~~  173 (294)
                      +.++++++++.++++.|.+++.+.+||+| +  ++++|++|+.|+++.+.
T Consensus       522 ~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        522 FPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence            99999999999999999999999999998 4  48999999999988654

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.57  E-value=6.2e-14  Score=125.35  Aligned_cols=190  Identities=21%  Similarity=0.215  Sum_probs=143.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHHHcCCCCc-----ccccccccc---cCCeEE
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTD-ANALLSGIVTDKDITTRVIAEGLRPD-----QTVVSKIMT---RNPIFV  130 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d-~~~~~~Givt~~di~~~~~~~~~~~~-----~~~v~~~~~---~~~~~v  130 (294)
                      +.+++.+..++.+++..+.++++..+||.| +.+.+.+++|.+-+++++........     ..++.++-.   ..+..+
T Consensus       163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i  242 (381)
T KOG1764|consen  163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASI  242 (381)
T ss_pred             CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheee
Confidence            448999999999999999999999999999 56899999999999977765544331     122222211   257788


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIE  209 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  209 (294)
                      ..++++.+|++.|...+++.+||++ .|+.+|+++..|+...+......                      ..+..-   
T Consensus       243 ~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~----------------------~~~~~~---  297 (381)
T KOG1764|consen  243 SEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYN----------------------NLDLSC---  297 (381)
T ss_pred             cCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccC----------------------ccchhH---
Confidence            9999999999999999999999999 78889999999987654431110                      000000   


Q ss_pred             HHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHHccC
Q 041090          210 TLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVAQNL  280 (294)
Q Consensus       210 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~~~~  280 (294)
                       +.+     .......+...+++|.++.++.++++.|..+++|+++||| +|+++|+||..|++..+...-.
T Consensus       298 -l~~-----~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p~  363 (381)
T KOG1764|consen  298 -LSE-----ALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTPS  363 (381)
T ss_pred             -HHH-----HhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCcc
Confidence             000     0111111133689999999999999999999999999999 6999999999999966665533

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.57  E-value=3.2e-14  Score=105.86  Aligned_cols=106  Identities=17%  Similarity=0.199  Sum_probs=89.9

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++++++++.++++.|.+.+.+.++|++ +++++|+++..|+.+....                              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~------------------------------   51 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN------------------------------   51 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc------------------------------
Confidence            356789999999999999988888999999 7899999999998652100                              


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                               .....++.++|..  ++.++.+++++.+|+++|.+++.+.+||+| +|+++|+||.+|++
T Consensus        52 ---------~~~~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~  109 (111)
T cd04603          52 ---------DYETLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL  109 (111)
T ss_pred             ---------cccccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence                     0112357788866  789999999999999999999999999999 69999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.57  E-value=8.3e-14  Score=103.84  Aligned_cols=108  Identities=33%  Similarity=0.519  Sum_probs=94.4

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++.++++++++.+|++.|.+.+.+.++|++++|+++|+++.+|+++.+. +.... ..++.+++...+.++.+++++.++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~-~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL-KGLSL-DDPVSEVMNRNPITAKVGSSREEI   80 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh-cCCCc-CCCHHHhhcCCCEEEcCCCCHHHH
Confidence            4567899999999999999999999999998999999999999975443 33333 456889998888899999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCL  169 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll  169 (294)
                      ++.|.+.+.+.+||++ +|+++|+++..|++
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          81 LALMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             HHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence            9999999999999998 88999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.57  E-value=5.7e-14  Score=104.55  Aligned_cols=110  Identities=49%  Similarity=0.769  Sum_probs=95.6

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++..+.+++++.++++.|.+++.+.+||+++ ++++|+++..|++..+...+......++.++|..++.++.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~   80 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEA   80 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHH
Confidence            5678899999999999999989999999997 999999999999766655443332357889998888899999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|.+++.+.+||++ +++++|+++..|++.
T Consensus        81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          81 LHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            9999999999999999 699999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.57  E-value=3e-14  Score=126.34  Aligned_cols=121  Identities=19%  Similarity=0.163  Sum_probs=101.8

Q ss_pred             ccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090          115 DQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE  191 (294)
Q Consensus       115 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~  191 (294)
                      ...+++++|.+  +++++++++++.++++.|.+.+...++|++ +|+++|++|..|+.+....                 
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~-----------------  262 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM-----------------  262 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhc-----------------
Confidence            34568999986  889999999999999999888888888888 8999999999998642111                 


Q ss_pred             HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHH
Q 041090          192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDV  271 (294)
Q Consensus       192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Di  271 (294)
                            +              ......++.++|.+  ++.++.+++++.+|+++|.+++++.+||+++|+++|+||++|+
T Consensus       263 ------~--------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di  320 (326)
T PRK10892        263 ------G--------------IDLRQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL  320 (326)
T ss_pred             ------C--------------CCcccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence                  0              00112468899977  8999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 041090          272 LMR  274 (294)
Q Consensus       272 l~~  274 (294)
                      ++.
T Consensus       321 l~~  323 (326)
T PRK10892        321 LRA  323 (326)
T ss_pred             Hhc
Confidence            843

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=9.3e-14  Score=103.39  Aligned_cols=110  Identities=35%  Similarity=0.525  Sum_probs=95.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      +++++.+++++.+|.+.|.+++.+.+||+++ |+++|+++..|++...+..+......++.++|...+.++.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA   80 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHH
Confidence            5678999999999999999999999999997 999999999998644444444443345899998888999999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|...+.+++||++ +|+++|+++..|+++
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999999999998 699999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=5.8e-14  Score=106.06  Aligned_cols=111  Identities=24%  Similarity=0.389  Sum_probs=95.4

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC--------CcccccccccccCCeEEc
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR--------PDQTVVSKIMTRNPIFVT  131 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~--------~~~~~v~~~~~~~~~~v~  131 (294)
                      ++.++.+++++.+|++.|.+.+++.+||++++|+++|+++..|+++.+......        ....++.+++..++..+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~   81 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeC
Confidence            567899999999999999999999999999889999999999997544321111        135578889988899999


Q ss_pred             CCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          132 SDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       132 ~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +++++.++++.|.+.+.+.+||++ +|+++|+++..|++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            999999999999999999999999 689999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=8.4e-14  Score=103.70  Aligned_cols=110  Identities=21%  Similarity=0.255  Sum_probs=95.1

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++..+.+++++.+|++.|.+.+.+.+||+|++++++|+++..|+.+.... +......++.++|..++.++..++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~-~~~~~~~~i~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALE-SEELKDAKVREVMNSPVITIDANDSIAKA   80 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhh-hhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence            35678999999999999999999999999988999999999999754443 22233567889998888999999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|...+.+.+||++ +|+++|+++..++++
T Consensus        81 ~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          81 RWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            9999999999999999 789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=4.3e-14  Score=102.48  Aligned_cols=93  Identities=27%  Similarity=0.388  Sum_probs=84.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      +++++.+++++.+|++.|.+++++.+||+|++|+++|+++..|+++..                  .+.++.+++++.++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~------------------~~~~v~~~~~l~~a   63 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS------------------EVVTATKRTTVSEC   63 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC------------------CcEEecCCCCHHHH
Confidence            567899999999999999999999999999899999999999996311                  16788999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|.+++.+.+||++ +|+++|+++..|+++
T Consensus        64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          64 AQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999999999999 689999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=5.8e-14  Score=102.24  Aligned_cols=91  Identities=16%  Similarity=0.246  Sum_probs=81.7

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      .++++++++++.++.+.|.+.+++.+||++ + |+++|++|..|+.+..                               
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------------   50 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------------   50 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence            356789999999999999999999999998 5 7999999999986410                               


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-C-CeEeEeeehhHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-G-SKIQGILTSKDVL  272 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~vGivt~~Dil  272 (294)
                                               .+.++.+++++.+|+++|.+++++++||++ + |+++|+||.+|++
T Consensus        51 -------------------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~   96 (98)
T cd04618          51 -------------------------RLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL   96 (98)
T ss_pred             -------------------------eeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence                                     177899999999999999999999999999 5 8999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.56  E-value=1.3e-13  Score=102.34  Aligned_cols=109  Identities=39%  Similarity=0.647  Sum_probs=95.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++.+++++.++.+|.+.|.+++.+.+||+|+ ++++|+++..|+++.+...+... ..++.+++..+++.+++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~-~~~i~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLDP-DTPVSEVMTAPPITIPPDATVFEA   79 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCCc-cCCHHHHhCCCCeEECCCCcHHHH
Confidence            5678999999999999999988999999997 99999999999975554433222 457889998899999999999999


Q ss_pred             HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      ++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~~~~~Giit~~di~~  110 (111)
T cd04800          80 LLLMLERGIHHLPVVDDGRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHHcCCCeeeEeECCEEEEEEEHHHhhc
Confidence            9999999999999999889999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.56  E-value=1e-13  Score=103.21  Aligned_cols=110  Identities=29%  Similarity=0.433  Sum_probs=95.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++.++.+++++.+|.+.|.+.+++.+||+|++|+++|+++..|+++. ..+.......++.++|..++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~-~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   80 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI-LFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA   80 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHH-HhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence            56789999999999999999999999999988999999999999743 33333332367899999999999999999999


Q ss_pred             HHHHHhCCCcEEEEEEC--CEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVEN--GEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~~--~~~vGivt~~dll~  170 (294)
                      ++.|...+.+.+||+++  ++++|+++..|++.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            99999999999999986  89999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.56  E-value=3.5e-13  Score=123.74  Aligned_cols=118  Identities=24%  Similarity=0.274  Sum_probs=105.2

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP  127 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  127 (294)
                      .+..++.++|.++++++.+++++.+|+++|.+++++.+||+| +++++|++|.+|+. .     ... ..++.++|..++
T Consensus        85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~-~-----~~~-~~~V~dIMt~~l  156 (475)
T TIGR01303        85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLL-G-----VDR-FTQVRDIMSTDL  156 (475)
T ss_pred             HhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhh-c-----CCC-CCCHHHHccCCc
Confidence            456788899999999999999999999999999999999998 47899999999984 1     122 357999999999


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                      +++++++++.+++++|.+++++.+||+| +++++|+||..||++...
T Consensus       157 itv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       157 VTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI  203 (475)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence            9999999999999999999999999999 899999999999987543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=8.8e-14  Score=105.40  Aligned_cols=110  Identities=18%  Similarity=0.232  Sum_probs=90.3

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCC--------cccccccccccCCeEE
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRP--------DQTVVSKIMTRNPIFV  130 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~--------~~~~v~~~~~~~~~~v  130 (294)
                      ++.++.+++++.+|++.|.++++..+||+|++ |+++|+++..|+++.+.......        ....+.+++..++.++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI   81 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence            56788999999999999999999999999987 99999999999975443221110        0012234667788899


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCL  169 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll  169 (294)
                      .+++++.++++.|.+++.+.+||++ +++++|+||..|+.
T Consensus        82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            9999999999999999999999998 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=8.4e-14  Score=103.35  Aligned_cols=108  Identities=19%  Similarity=0.290  Sum_probs=94.1

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++.++.+++++.+|++.|.+.+...+||++++|+++|+++..|+.+.+.. ..  ...++.++|..+++.+.+++++.++
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-~~--~~~~v~~~~~~~~~~i~~~~~~~~~   78 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE-GG--PDAPVRGVMRRDFPTVSPSATLDAV   78 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh-cC--CCCcHHHHhcCCCcEECCCCcHHHH
Confidence            46778999999999999998899999999988999999999999754432 22  2357888998888999999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|.+++...+||++ +|+++|+++..|+.+
T Consensus        79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            9999999999999999 699999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.55  E-value=1.8e-13  Score=101.39  Aligned_cols=107  Identities=31%  Similarity=0.396  Sum_probs=93.6

Q ss_pred             CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090           59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE  138 (294)
Q Consensus        59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  138 (294)
                      ++++.+.+++++.+|++.|.+++...+||+|++|+++|+++..|+++.+.. +    ..++.+++..++..+.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~-~----~~~~~~~~~~~~~~v~~~~~l~~   76 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVAR-D----KKSVEDIMTRNVITATPDEPIDV   76 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhh-C----ccCHHHhcCCCCeEECCCCcHHH
Confidence            467789999999999999999999999999988999999999999754322 1    13488888888889999999999


Q ss_pred             HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +++.|.+.+.+.+||++ +|+++|+++..++++
T Consensus        77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          77 AARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            99999999999999998 889999999999853

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.55  E-value=5.3e-14  Score=108.46  Aligned_cols=112  Identities=25%  Similarity=0.390  Sum_probs=95.8

Q ss_pred             CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC---------------------CCccc
Q 041090           59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL---------------------RPDQT  117 (294)
Q Consensus        59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~---------------------~~~~~  117 (294)
                      +++.++.+++++.+|++.|.++++..+||+|++++++|+++..|+.+....+..                     .....
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR   81 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence            467889999999999999999999999999988999999999999754322100                     11245


Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      ++.++|..++..+.+++++.++++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus        82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~  134 (135)
T cd04586          82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLR  134 (135)
T ss_pred             CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhc
Confidence            78888988889999999999999999999999999999889999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.55  E-value=3e-14  Score=121.27  Aligned_cols=152  Identities=17%  Similarity=0.233  Sum_probs=123.6

Q ss_pred             EEEEEcCCCcEEEEEeHHHHHH-HHHHcCCCCcccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEE
Q 041090           84 AVLLTDANALLSGIVTDKDITT-RVIAEGLRPDQTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEV  159 (294)
Q Consensus        84 ~lpV~d~~~~~~Givt~~di~~-~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~  159 (294)
                      .+||+...   .-.+|...++. ++..+....+-..|.++|.  ..+.++.+++++.+..++..+.+..++||+| ..++
T Consensus       157 ~lPvlsts---YDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kv  233 (432)
T COG4109         157 GLPVLSTS---YDTFTVATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKV  233 (432)
T ss_pred             CCceEEec---ccceeHHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceE
Confidence            35666532   23455555433 3333334444568899997  5677889999999999999999999999999 8999


Q ss_pred             EEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcH
Q 041090          160 IAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPV  239 (294)
Q Consensus       160 vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l  239 (294)
                      +|+++.+|+...                                           ....++..+|++  +|+++.+.+++
T Consensus       234 vGvVt~rDv~~~-------------------------------------------~~~t~ieKVMtk--np~tv~~~tsV  268 (432)
T COG4109         234 VGVVTMRDVLDK-------------------------------------------KPSTTIEKVMTK--NPITVRAKTSV  268 (432)
T ss_pred             EEEEEehhhhcC-------------------------------------------CCCccHHHHhcc--CCeeecccchH
Confidence            999999998642                                           334779999987  99999999999


Q ss_pred             HHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHHccCCCC
Q 041090          240 AVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVAQNLSPE  283 (294)
Q Consensus       240 ~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~~~~~~~  283 (294)
                      ..+.++|.-+++.-+||++ +++++|+||++|+++.+..-...|+
T Consensus       269 Asvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~qpq  313 (432)
T COG4109         269 ASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQPQ  313 (432)
T ss_pred             HHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccCCc
Confidence            9999999999999999999 8999999999999988888777664

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.55  E-value=1.8e-13  Score=101.47  Aligned_cols=108  Identities=22%  Similarity=0.360  Sum_probs=94.9

Q ss_pred             CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090           59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE  138 (294)
Q Consensus        59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  138 (294)
                      +++++++.+.++.+|.+.|.+++.+.+||+|+ |+++|+++..|+.+ ......  ...++.++|..++..+.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~-~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~   77 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEK-ALRHGL--GHAPVKDYMSTDVVTVPPDTPLSE   77 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHH-HHhccc--ccCcHHHHhcCCCEEECCCCcHHH
Confidence            36788999999999999999999999999998 99999999999964 333322  356788999889999999999999


Q ss_pred             HHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          139 ALQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       139 ~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      +++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus        78 ~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~~  109 (110)
T cd04595          78 VQELMVEHDIGRVPVVEDGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHHHcCCCeeEEEeCCEEEEEEEhHHhhc
Confidence            99999999999999999889999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.55  E-value=1.8e-13  Score=101.60  Aligned_cols=109  Identities=32%  Similarity=0.392  Sum_probs=94.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      +++.+++++++.+|.+.|.+++.+.++|+|+ |+++|+++..|+++... .+......++.++|..+...+++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVL-LDGLPSSTPVGEIATFPLITVDPDDFLFNA   79 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHH-cCCCCCCCCHHHHhCCCcEEECCCCcHHHH
Confidence            4567899999999999999999999999997 89999999999975433 222223567889998888899999999999


Q ss_pred             HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      ++.|.+++.+.+||+++++++|+++..++++
T Consensus        80 ~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~~  110 (111)
T cd04589          80 LLLMTRHRIHRVVVREGGEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHHhCccEEEEeeCCEEEEEEEhHHhhc
Confidence            9999999999999999889999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.5e-13  Score=102.10  Aligned_cols=109  Identities=23%  Similarity=0.297  Sum_probs=94.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++..+++++++.+|++.|.+++++.+||+|++|+++|+++..|++... ..... ...++.++|..++..+.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLD-LFESF-LEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHH-hhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            567899999999999999999999999999889999999999997432 22211 2456888888888899999999999


Q ss_pred             HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      ++.|.+++...+||+++|+++|+++..|++.
T Consensus        80 ~~~~~~~~~~~~~Vv~~~~~~G~it~~di~~  110 (111)
T cd04626          80 LDIMREKQIGRLPVVDDNKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHcCCCeeeEeECCEEEEEEEhHHhcc
Confidence            9999999999999999889999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=7.6e-14  Score=106.26  Aligned_cols=110  Identities=22%  Similarity=0.276  Sum_probs=90.7

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcc-------------cccccccccC
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ-------------TVVSKIMTRN  126 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~-------------~~v~~~~~~~  126 (294)
                      ++.++++++++.+|++.|.+++.+.+||+|++|+++|+++..|+++... +......             ....+.+..+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL-SPDDLLLYRTITFKELSEKFTDSDGVKSRP   80 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc-CcchhhcccchhhhhhhhhcccccccccCC
Confidence            5678999999999999999999999999998999999999999975432 2211111             1122456677


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +.++++++++.++++.|.+++.+.+||++ +++++|++|..|+++
T Consensus        81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            88899999999999999999999999999 799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.2e-13  Score=106.02  Aligned_cols=110  Identities=21%  Similarity=0.389  Sum_probs=94.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcc--------------------ccc
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ--------------------TVV  119 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~--------------------~~v  119 (294)
                      ++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++.+. .......                    .++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIY-KGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHh-ccCCcccccccccccccchHHHHHHcCCCH
Confidence            5678999999999999999999999999999899999999999975443 2221111                    268


Q ss_pred             ccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       120 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      .+++.+++..+.+++++.++++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~~  131 (132)
T cd04636          81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDIIR  131 (132)
T ss_pred             HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhhc
Confidence            888888888999999999999999999999999999899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.1e-13  Score=104.10  Aligned_cols=110  Identities=21%  Similarity=0.356  Sum_probs=90.4

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++.+++++.++++.|..++...+||++ +++++|+++..++.+.....                             
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~-----------------------------   52 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG-----------------------------   52 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-----------------------------
Confidence            467889999999999999888899999999 78999999999987643210                             


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-C---CeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-G---SKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~---g~~vGivt~~Dil  272 (294)
                              ......++.++|.+...+.++.+++++.+++++|.+++++.+||+| +   |+++|+||+.|++
T Consensus        53 --------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~  116 (118)
T cd04617          53 --------ADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             --------CCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence                    0011245677775222688999999999999999999999999998 4   6999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=2.1e-13  Score=101.32  Aligned_cols=109  Identities=32%  Similarity=0.480  Sum_probs=94.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++..+.+++++.+|.+.|.+.+.+.+||+|++|+++|+++..|+++.+. .+... ..++.++|..++..+.+++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~-~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVA-AGIDL-DTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHh-ccCCC-ccCHHHhccCCCEEECCCCcHHHH
Confidence            5678899999999999999999999999998899999999999975443 33322 457888988888999999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|.+.+...+||++ +|++.|+++..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             HHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            9999988888999999 799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.3e-13  Score=102.90  Aligned_cols=110  Identities=20%  Similarity=0.270  Sum_probs=92.4

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      +++.+.+++++.++++.|.+.+.+.+||++ + ++++|+++..|+++.+....                           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~---------------------------   54 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEG---------------------------   54 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCC---------------------------
Confidence            467789999999999999888889999998 6 89999999999976543200                           


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM  273 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~  273 (294)
                               ......++.++|..  ++.++++++++.+++++|.+.+...+||+++|+++|+|++.|+++
T Consensus        55 ---------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~  113 (114)
T cd04630          55 ---------RDPDRVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVENNELIGIISLTDIFL  113 (114)
T ss_pred             ---------CCCCccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhc
Confidence                     00112457788866  899999999999999999999999999999899999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.4e-13  Score=104.86  Aligned_cols=111  Identities=20%  Similarity=0.319  Sum_probs=90.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH----HHcC-CCCcccccccccccCCeEE----
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRV----IAEG-LRPDQTVVSKIMTRNPIFV----  130 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~----~~~~-~~~~~~~v~~~~~~~~~~v----  130 (294)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+..    ..++ ......++.++|.++...+    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~   81 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL   81 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence            467889999999999999999999999999889999999999996421    2222 2233567889997654332    


Q ss_pred             --cCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHH
Q 041090          131 --TSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLY  170 (294)
Q Consensus       131 --~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~  170 (294)
                        .+++++.++++.|.+++.+.+||++ + |+++|+||..|+++
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence              2688999999999999999999999 5 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.54  E-value=1.5e-13  Score=102.30  Aligned_cols=110  Identities=33%  Similarity=0.470  Sum_probs=96.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      +++++++++++.++++.|.+.+.+.+||++++|+++|+++..++.+ ++.+.......++.++|..++.++.+++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   81 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRR-ALEKGLDILTLPVADVMTRNPKTIDPDALAAEA   81 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHH-HHhccCccccCCHHHhhccCCeEECCCCcHHHH
Confidence            4567899999999999999888899999998899999999999974 444443443457999998888899999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|...+.+.+||++ +++++|+++..|+++
T Consensus        82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          82 LELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            9999999999999999 899999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=2.8e-13  Score=100.66  Aligned_cols=110  Identities=24%  Similarity=0.453  Sum_probs=94.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++..+++++++.+|++.|.+.+.+.+||+++ ++++|+++..|+++.+..........++.+++..++..+.+++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA   80 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHH
Confidence            5677899999999999999999999999996 499999999999865554432233557889998888889999999999


Q ss_pred             HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      ++.|.+.+.+.+||+++++++|+++..|+++
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~  111 (112)
T cd04802          81 AKLMAKHGIKRLPVVDDDELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence            9999999999999999559999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.1e-13  Score=104.93  Aligned_cols=110  Identities=28%  Similarity=0.403  Sum_probs=94.4

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCC-----------cccccccccccCC
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRP-----------DQTVVSKIMTRNP  127 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~-----------~~~~v~~~~~~~~  127 (294)
                      ++.++.++.++.+|++.|.+.+.+.+||+|++ |+++|+++..|+++.+ .+....           ...++.+++..++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYL-GGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHh-hccchhccccccccchhhhcCHHHHhcCCc
Confidence            56788999999999999999999999999987 9999999999997544 322211           1346888888889


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +++++++++.++++.|.+.+.+.++|++ +|+++|+|+..|+++
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            9999999999999999999999999999 699999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.6e-13  Score=102.51  Aligned_cols=108  Identities=14%  Similarity=0.174  Sum_probs=91.3

Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      +.++.+++++.++++.|.+.+...++|++ +|+++|+++..|+++.....                              
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~------------------------------   52 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRC------------------------------   52 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhc------------------------------
Confidence            45788999999999999999999999998 88999999999987532110                              


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                            .......++.++|..  ++.++.+++++.++++.|.+++..++||+| +|+++|+||++|++
T Consensus        53 ------~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~  112 (114)
T cd04619          53 ------GGPGCTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDAL  112 (114)
T ss_pred             ------CCCcccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhc
Confidence                  001123567888866  899999999999999999999999999999 68999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.54  E-value=2e-13  Score=100.46  Aligned_cols=103  Identities=18%  Similarity=0.216  Sum_probs=90.6

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      +++.++++.++.+|++.|.+++.+.+||+|++|+++|+++..|+++..        ...+.+++...+..+.+++++.++
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~   73 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS--------GGCCGDHAEPFKVTVSVDDDLRIV   73 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------ccchhhhcccCCEEECCCCCHHHH
Confidence            567889999999999999999999999999889999999999997421        124778887777889999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|.+.+...+||++ +++++|+++..++++
T Consensus        74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999999999999 789999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.53  E-value=1.4e-13  Score=102.69  Aligned_cols=108  Identities=22%  Similarity=0.271  Sum_probs=90.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc--CCeEEcCCCcH
Q 041090           60 KALTIPEGTIVSDACRRMASRR-VDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIFVTSDSLA  136 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~-~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l  136 (294)
                      ++.++++++++.+|++.|.+++ .+.+||+|++|+++|+++.+|+++... ..  ....++.++|..  .++.+.+++++
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-~~--~~~~~v~~~~~~~~~~~~v~~~~~l   78 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT-SQ--WAQTTVIQVMTPAAKLVTVLSEESL   78 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH-hh--ccccchhhhhcccccceEECCCCcH
Confidence            5678999999999999997765 889999998899999999999975432 21  124567888863  35678999999


Q ss_pred             HHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          137 IEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       137 ~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      .++++.|.+++.+.+||++ +++++|+++..|+++
T Consensus        79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            9999999999999999999 689999999998763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.53  E-value=8.1e-14  Score=123.35  Aligned_cols=119  Identities=12%  Similarity=0.146  Sum_probs=102.0

Q ss_pred             ccccccccccC--CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          116 QTVVSKIMTRN--PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       116 ~~~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      ..+|+++|.++  ++++++++++.++.+.|.+.+...+||+| +|+++|+++..|+.+....                  
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~------------------  257 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVG------------------  257 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhC------------------
Confidence            45789999887  89999999999999999888888999999 8999999999998653211                  


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                                          ......++.++|.+  ++.++.+++++.+|++.|.+++...+||+| +|+++|+||+.|+
T Consensus       258 --------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di  315 (321)
T PRK11543        258 --------------------GGALTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF  315 (321)
T ss_pred             --------------------CCCcCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence                                00123457899977  899999999999999999999999999999 7899999999999


Q ss_pred             HHH
Q 041090          272 LMR  274 (294)
Q Consensus       272 l~~  274 (294)
                      +++
T Consensus       316 ~~~  318 (321)
T PRK11543        316 YQA  318 (321)
T ss_pred             Hhc
Confidence            843

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.53  E-value=2.9e-13  Score=99.98  Aligned_cols=106  Identities=20%  Similarity=0.367  Sum_probs=93.0

Q ss_pred             CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090           59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE  138 (294)
Q Consensus        59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  138 (294)
                      +++..++++.++.+|++.|.++++..+||+|++|+++|+++..|++... .     ...++.++|...+..+++++++.+
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-~-----~~~~v~~~~~~~~~~v~~~~~~~~   75 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY-K-----EAKSLEDIMLEDVFTVQPDASLRD   75 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh-h-----cCCcHhHhhcCCceEECCCCcHHH
Confidence            3567899999999999999999999999999889999999999996432 1     124678888888899999999999


Q ss_pred             HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +++.|.+.+.+.+||++ +|+++|+++..++++
T Consensus        76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          76 VLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            99999998999999999 789999999999863

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.6e-13  Score=104.75  Aligned_cols=111  Identities=23%  Similarity=0.304  Sum_probs=93.1

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC------------CCCcccccccccccCC
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG------------LRPDQTVVSKIMTRNP  127 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~------------~~~~~~~v~~~~~~~~  127 (294)
                      ++..+.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+.+....            ......++.++|..++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV   81 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence            5677899999999999999999999999999999999999999975432210            0012346888898888


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLY  170 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~  170 (294)
                      +++.+++++.++++.|.+.+.+.+||++   +++++|+|+..|+++
T Consensus        82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            9999999999999999998889999885   489999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=9.7e-14  Score=104.70  Aligned_cols=115  Identities=21%  Similarity=0.275  Sum_probs=87.9

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++++++++.++++.|.+++++.+||++ +|+++|+++..|++.........                    ..... 
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~--------------------~~~~~-   60 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYN--------------------NLDLT-   60 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccc--------------------cccCC-
Confidence            567889999999999999999999999998 89999999999998643211000                    00000 


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                            +.+.   .....+|..  ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||++|++
T Consensus        61 ------~~~~---~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~  118 (120)
T cd04641          61 ------VGEA---LERRSQDFE--GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL  118 (120)
T ss_pred             ------HHHH---HhhcccCCC--CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence                  0000   011223333  678999999999999999999999999999 68999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.53  E-value=3e-13  Score=100.21  Aligned_cols=108  Identities=33%  Similarity=0.481  Sum_probs=93.7

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++..+++++++.+|++.|.+++...+||+++ ++++|+++..|+++.... ... ...++.++|..+++++.+++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~l~~~   78 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLAS-GPD-LQTPVGEVMSSPLLTVPADTSLYDA   78 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhc-CCC-CCcCHHHhcCCCceEECCCCCHHHH
Confidence            4678999999999999999989999999986 899999999999754432 222 3567889998888999999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|.+.+.+.+||++ +|+++|+++..++++
T Consensus        79 l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          79 RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            9999999999999999 799999999999864

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.53  E-value=2.3e-13  Score=100.58  Aligned_cols=105  Identities=24%  Similarity=0.327  Sum_probs=93.8

Q ss_pred             CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090           59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE  138 (294)
Q Consensus        59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  138 (294)
                      .++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..|++..       ....++.++|...+.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~~~~~v~~~~~l~~   74 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK-------DPDTTIEKVMTKNPITVNPKTSVAS   74 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc-------cccccHHHHhcCCCeEECCCCCHHH
Confidence            367889999999999999999999999999999999999999999631       1245788999888899999999999


Q ss_pred             HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +++.|.+.+.+.+||++ +|+++|+++..|+++
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999 899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.52  E-value=1.5e-13  Score=119.25  Aligned_cols=142  Identities=18%  Similarity=0.243  Sum_probs=114.5

Q ss_pred             EEEeHHHHHHHHHHcCCCCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHH
Q 041090           96 GIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYD  171 (294)
Q Consensus        96 Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~  171 (294)
                      |.+...+-  .++.+...+.+.+++++|.+  ++++++.++++.++++.+.+.+++++||++ + ++++|+++..|++..
T Consensus        48 g~l~~~e~--~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~  125 (292)
T PRK15094         48 DLIDEDTR--DMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF  125 (292)
T ss_pred             CCCCHHHH--HHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence            56665552  44555567778899999987  588999999999999999999999999998 4 789999999999753


Q ss_pred             HHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCC
Q 041090          172 AISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRS  251 (294)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~  251 (294)
                      ...                                       ......+.++|.   ++.++++++++.++++.|.+.+.
T Consensus       126 ~~~---------------------------------------~~~~~~l~~l~r---~~~~V~e~~~l~~~L~~m~~~~~  163 (292)
T PRK15094        126 MRS---------------------------------------DAEAFSMDKVLR---QAVVVPESKRVDRMLKEFRSQRY  163 (292)
T ss_pred             hhc---------------------------------------cCCcCCHHHHcC---CCcCcCCCCcHHHHHHHHHhcCC
Confidence            210                                       000123667774   35689999999999999999999


Q ss_pred             ceeEEee-CCeEeEeeehhHHHHHHHHccCC
Q 041090          252 NSALIVT-GSKIQGILTSKDVLMRVVAQNLS  281 (294)
Q Consensus       252 ~~lpVvd-~g~~vGivt~~Dil~~~~~~~~~  281 (294)
                      +.+||+| .|.++|+||..||+..++.+-.+
T Consensus       164 ~~a~VvDe~G~viGiVTleDIle~ivGei~d  194 (292)
T PRK15094        164 HMAIVIDEFGGVSGLVTIEDILELIVGEIED  194 (292)
T ss_pred             EEEEEEeCCCCEEEEeEHHHHHHHHhCCCcc
Confidence            9999999 68899999999999888876443

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.52  E-value=2.9e-13  Score=100.87  Aligned_cols=107  Identities=18%  Similarity=0.264  Sum_probs=90.6

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      .+.++.+++++.++++.|.+.+...++|++ +|+++|+++..|+++....                              
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~------------------------------   52 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLK------------------------------   52 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhc------------------------------
Confidence            356789999999999999888888999998 7899999999998753221                              


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                              ......++.++|..  .+.++.+++++.++++.|.+.+.+.+||++ +|+++|+||++|++
T Consensus        53 --------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          53 --------GLSLDDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             --------CCCcCCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence                    01122457788866  788999999999999999999999999998 79999999999997

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=4e-13  Score=100.38  Aligned_cols=109  Identities=27%  Similarity=0.400  Sum_probs=91.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCC--CcH
Q 041090           60 KALTIPEGTIVSDACRRMASRR-VDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSD--SLA  136 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~-~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~--~~l  136 (294)
                      ++.+++++.++.+|++.|.+++ .+.++|.+ +|+++|+++..|+++ ...........++.++|..+++.+.++  +++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~-~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l   79 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVR-LTAIGKDLSDLPIGEVMTQPVVTLQESEIQDI   79 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHH-HHhcCCCccccCHHHhcCCCcEEEecccccCH
Confidence            4667899999999999998888 67778777 589999999999975 333333333467889998888888876  689


Q ss_pred             HHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          137 IEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       137 ~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      .++++.|.+++.+.+||++ +|+++|++|..|+++
T Consensus        80 ~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          80 FTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             HHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999999 799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2.6e-13  Score=102.34  Aligned_cols=110  Identities=29%  Similarity=0.389  Sum_probs=94.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC---------CCcccccccccccCCeEE
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL---------RPDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~---------~~~~~~v~~~~~~~~~~v  130 (294)
                      +++++.+++++.+|++.|.+++.+.+||+|+ |+++|+++..|+++.+.....         .....++.++|..++..+
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI   80 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence            5678999999999999999999999999996 999999999999754432211         112457888888889999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      .+++++.++++.|.+.+.+.+||+++|+++|+++..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~~  120 (121)
T cd04633          81 EPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhhc
Confidence            9999999999999999999999998889999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=2.4e-13  Score=98.50  Aligned_cols=92  Identities=23%  Similarity=0.337  Sum_probs=82.6

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      +++++.+++++.++++.|.+.++..+||++ +|+++|+++..|++..                                 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~---------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK---------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence            467889999999999999989999999999 8999999999998631                                 


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                             ..+.++.+++++.+++++|.+++.+.+||++ +|+++|+||++|+++
T Consensus        49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                                   1377899999999999999999999999999 589999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=3.9e-13  Score=100.06  Aligned_cols=109  Identities=22%  Similarity=0.322  Sum_probs=91.6

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++..+.+++++.++++.|.+.+...++|++ +++++|+++..|+++.....                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES-----------------------------   52 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence            356789999999999999988889999999 78999999999997643220                             


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                              +.....++.++|..  ++.++.+++++.++++.|.+.+...+||++ +|+++|++|..|+++
T Consensus        53 --------~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          53 --------EELKDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             --------hhhcCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence                    11123457788866  899999999999999999999999999998 689999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.51  E-value=4.7e-13  Score=99.10  Aligned_cols=107  Identities=26%  Similarity=0.387  Sum_probs=93.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++..+++++++.+|.+.|.+++++.+||+++ ++++|+++..|+++. ..++..  ..++.+++..++..+++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~-~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~   77 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHA-IARGLE--LAKVKDVMTKDVITIDEDEQLYDA   77 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHH-Hhcccc--ccCHHHHhcCCceEECCCCCHHHH
Confidence            5678999999999999999999999999998 999999999999753 333222  256888888888999999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|...+.+.+||++ +|+++|+++..|+++
T Consensus        78 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          78 IRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            9999999999999999 699999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.51  E-value=5.4e-13  Score=98.95  Aligned_cols=108  Identities=19%  Similarity=0.282  Sum_probs=91.6

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      ++.+++.+.++.++.+.|.+.+++.+||+++++++|+++..+++......                              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~------------------------------   51 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE------------------------------   51 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc------------------------------
Confidence            56778999999999999988888899999989999999999987543210                              


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                             ......++.++|..  ++..+.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus        52 -------~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~  109 (111)
T cd04800          52 -------GLDPDTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL  109 (111)
T ss_pred             -------CCCccCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence                   00112457788866  89999999999999999999999999999989999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.51  E-value=4e-13  Score=101.17  Aligned_cols=110  Identities=29%  Similarity=0.440  Sum_probs=93.7

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC---------CcccccccccccCCeEE
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR---------PDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~---------~~~~~v~~~~~~~~~~v  130 (294)
                      ++.+++++.++.+|++.|.+.+...+||+|+ |+++|+++..|+++........         ....++.++|.+++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence            5678999999999999999999999999997 9999999999997544322111         11356788888889999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      .+++++.++++.|.+.+.+.+||++ +|+++|+++..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            9999999999999999999999999 699999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.51  E-value=6.3e-13  Score=98.48  Aligned_cols=107  Identities=21%  Similarity=0.298  Sum_probs=91.8

Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      +++++++.+.++.++.+.|.+.+...+||+++++++|+++..|++.....                              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~------------------------------   51 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRH------------------------------   51 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhc------------------------------
Confidence            35678899999999999998888889999988899999999998653211                              


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                               .....++.++|..  .+.++.+++++.+++++|.+.+.+.+||+++|+++|+||..|++
T Consensus        52 ---------~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~  108 (110)
T cd04595          52 ---------GLGHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL  108 (110)
T ss_pred             ---------ccccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence                     0123567888866  89999999999999999999999999999999999999999997

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.51  E-value=3.6e-13  Score=98.83  Aligned_cols=102  Identities=22%  Similarity=0.314  Sum_probs=89.1

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      ++..+.+++++.++++.|.+.+...+||+++++++|+++..+++...                                 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~---------------------------------   48 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH---------------------------------   48 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence            45678999999999999988888899999988999999999986421                                 


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                                ...++.++|..  .+.++++++++.++++.|.+.+...+||+++|+++|+||..|++
T Consensus        49 ----------~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~  103 (105)
T cd04599          49 ----------PNRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA  103 (105)
T ss_pred             ----------ccCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence                      11346777866  89999999999999999999999999999999999999999997

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.51  E-value=4.9e-13  Score=99.19  Aligned_cols=107  Identities=18%  Similarity=0.288  Sum_probs=91.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE  138 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  138 (294)
                      ++.++.+++++.+|++.|.+.+.+.+||++++ |+++|+++..|+++.. .....  ...+.+++ .++.++.+++++.+
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~-~~~~~--~~~~~~~~-~~~~~v~~~~~l~~   77 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRAL-AEGEE--DLDLRDLL-RPPLFVPESTPLDD   77 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHH-HcCCC--cCCHHHHh-cCCeecCCCCcHHH
Confidence            46789999999999999999999999999988 9999999999997544 32221  14566665 46788999999999


Q ss_pred             HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +++.|..++.+.+||++ +|+++|++|..|++.
T Consensus        78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            99999999999999999 799999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=2.1e-13  Score=102.96  Aligned_cols=111  Identities=23%  Similarity=0.279  Sum_probs=94.1

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC---CC-----CcccccccccccCCeEEc
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG---LR-----PDQTVVSKIMTRNPIFVT  131 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~---~~-----~~~~~v~~~~~~~~~~v~  131 (294)
                      ++.++++++++.+|++.|.+.+++.+||+|++|+++|+++..|+++......   ..     ....++.+++..++..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence            5678999999999999999999999999998899999999999974321110   00     124567888888888999


Q ss_pred             CCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          132 SDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       132 ~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      .++++.++++.|.+.+.+.+||++ +|+++|+++..|+++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            999999999999999999999999 799999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.51  E-value=3.5e-13  Score=100.72  Aligned_cols=109  Identities=23%  Similarity=0.373  Sum_probs=90.6

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++..+.+++++.++++.|.+.+++.++|++ +|+++|+++..||+......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEAD-----------------------------   52 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcc-----------------------------
Confidence            456788999999999999988899999999 79999999999997643220                             


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-C--CeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-G--SKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~--g~~vGivt~~Dil~  273 (294)
                              ......++.++|..  .+.++.+++++.+++++|.+++...+||+| +  |+++|+||..|+++
T Consensus        53 --------~~~~~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          53 --------EAGEPSAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             --------cccccccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence                    00011336777766  899999999999999999999999999998 4  79999999999983

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.50  E-value=2.7e-13  Score=101.21  Aligned_cols=109  Identities=20%  Similarity=0.274  Sum_probs=88.5

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCC-CcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          126 NPIFVTSDSLAIEALQKMVQGK-FRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      +..++++++++.++++.|.+++ ...+||++ +|+++|+++..|++.....                             
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-----------------------------   52 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTS-----------------------------   52 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHh-----------------------------
Confidence            4567899999999999887664 78899999 7899999999998764321                             


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                .....++.++|.....+.++.+++++.+|++.|.+.+.+.+||++ +|+++|++|.+||++
T Consensus        53 ----------~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          53 ----------QWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ----------hccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence                      011245677775322467899999999999999999999999999 589999999999973

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.50  E-value=2.5e-13  Score=117.15  Aligned_cols=112  Identities=29%  Similarity=0.376  Sum_probs=100.1

Q ss_pred             cchhccccCC-ceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeE
Q 041090           51 RTVKKLRLSK-ALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF  129 (294)
Q Consensus        51 ~~v~dl~~~~-~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~  129 (294)
                      ++|+++|.++ ++.+.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++.+ ..+.. ...+++++|.+++.+
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~-~~~~~-~~~~v~~im~~~~~~  232 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRAL-LGGGS-LKSEVRDFMTLGPKT  232 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHH-hcCCc-ccCcHHHhCCCCCeE
Confidence            7899999998 99999999999999999999999999999999999999999997533 32222 356799999989999


Q ss_pred             EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEe
Q 041090          130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILD  164 (294)
Q Consensus       130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt  164 (294)
                      +.+++++.++++.|.+.+.+.+||++ +|+++|+|+
T Consensus       233 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       233 FKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            99999999999999999999999999 789999984

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=5.9e-13  Score=98.80  Aligned_cols=107  Identities=21%  Similarity=0.292  Sum_probs=90.6

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++..++++.++.++++.|.+.+++.+||++ +|+++|+++..|++......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE-----------------------------   52 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence            456789999999999999988999999999 79999999999997532210                             


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                               .....++.++|.+  ++.++.+++++.++++.|.+++...+||+++|+++|+||..|++
T Consensus        53 ---------~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~  109 (111)
T cd04626          53 ---------SFLEKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL  109 (111)
T ss_pred             ---------ccccCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence                     0012457778866  89999999999999999999999999999989999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.50  E-value=2.5e-13  Score=102.80  Aligned_cols=120  Identities=23%  Similarity=0.343  Sum_probs=94.5

Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      +++.++.+++++.++.+.|.+.+++++||++ +|+++|+++..+++.........                         
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~-------------------------   56 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR-------------------------   56 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-------------------------
Confidence            4677899999999999999988899999998 79999999999997643221000                         


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                        .............++.++|.+  .+.++.+++++.+++++|.+.+.+.+||++ +|+++|+||+.|+++
T Consensus        57 --~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          57 --PLRGRLRGRDKPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             --hhhhhhhcccccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence              000000011123457888866  899999999999999999999999999999 899999999999973

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.50  E-value=1.3e-13  Score=104.82  Aligned_cols=110  Identities=22%  Similarity=0.316  Sum_probs=90.9

Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      ++++++.++.++.++++.|.+.++..+||++ +++++|+++..+++......                            
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~----------------------------   53 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG----------------------------   53 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh----------------------------
Confidence            4577899999999999999999999999999 78999999999998643321                            


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHH---------HhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMR---------EFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~---------~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                               ......++.++|..  ++.++.+++++.++.++|.         ..+.+.+||++ +|+++|+||+.|+++
T Consensus        54 ---------~~~~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~  122 (124)
T cd04608          54 ---------KVQPSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLS  122 (124)
T ss_pred             ---------ccCCCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhh
Confidence                     01134679999977  9999999999999999653         33567788888 699999999999984

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.50  E-value=7.9e-13  Score=97.90  Aligned_cols=105  Identities=29%  Similarity=0.485  Sum_probs=90.1

Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      ++++.+.++.++.++++.|.+.++..++|++ +|+++|+++..+++......                            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~----------------------------   53 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD----------------------------   53 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC----------------------------
Confidence            4667889999999999999988899999999 78999999999997532210                            


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                                   ..++.++|..  ++.++.+++++.++++.|.+.+.+.+||++ +|+++|+||+.|++
T Consensus        54 -------------~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~  108 (110)
T cd04605          54 -------------KKSVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS  108 (110)
T ss_pred             -------------ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence                         0236677765  899999999999999999999999999998 78999999999997

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=6.5e-13  Score=98.67  Aligned_cols=110  Identities=21%  Similarity=0.366  Sum_probs=90.0

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      ...++.+++++.++++.|.+.+.+.++|.++|+++|+++..|+++.....                      +       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~----------------------~-------   52 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQH----------------------G-------   52 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhc----------------------C-------
Confidence            35678999999999999987777777777789999999999997643210                      0       


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM  273 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~  273 (294)
                             ......++.++|..  .+.++.+++++.+++++|.+++...+||+++|+++|+||++|+++
T Consensus        53 -------~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~  111 (112)
T cd04625          53 -------AGVLDTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAK  111 (112)
T ss_pred             -------CchhcCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhhc
Confidence                   00112457888866  788999999999999999999999999999999999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=8.2e-13  Score=98.11  Aligned_cols=109  Identities=28%  Similarity=0.372  Sum_probs=91.6

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++.++.++.++++.|.+.+++.+||++ +++++|+++..+++.......                            
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~----------------------------   53 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRG----------------------------   53 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcC----------------------------
Confidence            456788999999999999988999999998 799999999999976432200                            


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                              ......++.++|..  ++.++.+++++.++++.|.+.+.+.+||+++|+++|+||..|++
T Consensus        54 --------~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~  111 (113)
T cd04623          54 --------ASALDTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDGGKLVGIVSIGDVV  111 (113)
T ss_pred             --------CCccccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhh
Confidence                    00012457788866  89999999999999999999999999999989999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=5e-13  Score=103.19  Aligned_cols=132  Identities=20%  Similarity=0.268  Sum_probs=95.3

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++.+++++.++++.|.+.+...+||+| +++++|+++..|++............ +..     ..++...+      
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~-~~~-----~~~~~~~~------   69 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLP-KKS-----IKMKRKAG------   69 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccc-hhh-----hhhhhhcc------
Confidence            456789999999999999988888999999 79999999999998754321000000 000     00000000      


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~  273 (294)
                        ............++.++|..  ++..+.+++++.++++.|.+.+.+.+||+++|+++|+||..|+++
T Consensus        70 --~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~  134 (135)
T cd04621          70 --QKRYRYVKEVPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICR  134 (135)
T ss_pred             --cccccccccccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhh
Confidence              00000111234568899966  889999999999999999999999999999999999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=6e-13  Score=99.14  Aligned_cols=111  Identities=28%  Similarity=0.419  Sum_probs=92.4

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++..++++.++.++++.|.+.+...+||++ +++++|+++..++++.......                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~---------------------------   54 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSY---------------------------   54 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhh---------------------------
Confidence            456789999999999999888888899999 7899999999999865433100                           


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~  273 (294)
                              ......++.++|..  ++..+.+++++.++++.|.+.+.+.+||+++|+++|+||.+|+++
T Consensus        55 --------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~  113 (114)
T cd04629          55 --------HCDGVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLR  113 (114)
T ss_pred             --------ccCCCccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHhc
Confidence                    00112457788866  889999999999999999999999999999899999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.49  E-value=3.8e-13  Score=99.45  Aligned_cols=103  Identities=19%  Similarity=0.264  Sum_probs=90.2

Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      .++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++..+++...                               
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------   50 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------------------------------   50 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------------------------------
Confidence            3567889999999999999988888999999 89999999999986310                               


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                                  ...++.++|..  .+.++.+++++.+++++|.+.+...+||++ +|+++|++|..|++
T Consensus        51 ------------~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~  106 (108)
T cd04596          51 ------------PDTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL  106 (108)
T ss_pred             ------------ccccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                        12357788866  899999999999999999999999999998 79999999999997

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.49  E-value=3.2e-13  Score=104.07  Aligned_cols=132  Identities=22%  Similarity=0.316  Sum_probs=95.4

Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      +++.++.+++++.++++.|.+.+++.+||++ +++++|+++..++++............            | ...... 
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~------------~-~~~~~~-   67 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRAR------------W-LDLLAG-   67 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhh------------H-HHHhcc-
Confidence            4667889999999999999999999999999 789999999999986433211000000            0 000000 


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM  273 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~  273 (294)
                      . .............++.++|..  ++..+.+++++.++++.|.+.+.+.+||+|+|+++|+||+.|+++
T Consensus        68 ~-~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~  134 (135)
T cd04586          68 A-EELAAAFVRSHGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLR  134 (135)
T ss_pred             h-HHHHHHHHHhcCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhc
Confidence            0 000000001123568889966  899999999999999999999999999999999999999999973

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.49  E-value=8.4e-13  Score=97.80  Aligned_cols=108  Identities=30%  Similarity=0.446  Sum_probs=92.7

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++..+++++++.+|++.|.+.+.+.+||+|+ ++++|+++..|+.+.. .... .....+.+++..++..+.+++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~   78 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVP-AEGR-EATVLVGDVMTRDPVTASPDETLRDA   78 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHH-hcCc-ccccCHHHhccCCCeEECCCCCHHHH
Confidence            5678999999999999999998999999998 9999999999997433 2221 11236778888889999999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|.+.+.+.+||++ +++++|+++..|+++
T Consensus        79 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            9999999999999999 699999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.49  E-value=6.3e-13  Score=123.16  Aligned_cols=121  Identities=20%  Similarity=0.208  Sum_probs=103.2

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP  127 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  127 (294)
                      ++.++++++|.+++.++.+++++.+|++.|.+++++.+||+|++++++|+|+..|+++.+.... .....++.++|..++
T Consensus       332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-~~~~~~v~~im~~~~  410 (454)
T TIGR01137       332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK-ANPDDAVSKVMSKKF  410 (454)
T ss_pred             hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC-CCcCCCHHHhcCCCC
Confidence            6778999999999999999999999999999999999999998899999999999976554322 222457999998888


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYD  171 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~  171 (294)
                      .++++++++.++++.|.+++  ..+|+++++++|+||..|+++.
T Consensus       411 ~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll~~  452 (454)
T TIGR01137       411 IQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLLSF  452 (454)
T ss_pred             eEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHHHh
Confidence            89999999999999998754  3444458999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=8.6e-13  Score=99.93  Aligned_cols=116  Identities=23%  Similarity=0.239  Sum_probs=87.9

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      ++.++.+++++.++++.|.+.+++++||++ + ++++|+++..|+++..........  .                    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~--~--------------------   59 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP--G--------------------   59 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc--c--------------------
Confidence            466789999999999999988899999999 6 899999999999875432110000  0                    


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                          .....  .......++|..  ++.++.+++++.+|++.|.+++.+++||+| +|+++|+||..|+
T Consensus        60 ----~~~~~--~~~~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di  120 (123)
T cd04627          60 ----LDPLY--PIPLRDLTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             ----hhhhh--hhhhhhcccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence                00000  000112335544  889999999999999999999999999998 7899999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.49  E-value=3.5e-13  Score=124.56  Aligned_cols=117  Identities=21%  Similarity=0.227  Sum_probs=102.0

Q ss_pred             cchhcccc---CCceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccc
Q 041090           51 RTVKKLRL---SKALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT  124 (294)
Q Consensus        51 ~~v~dl~~---~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  124 (294)
                      .+|+++|.   ...+++++++|+.+|++.|.+++++.+||+|+   +++++|+||.+|+. ..    ......+++++|.
T Consensus        94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr-~~----~~~~~~~V~dIMt  168 (502)
T PRK07107         94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR-IS----RMSLDTKVKDFMT  168 (502)
T ss_pred             HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh-cc----ccCCCCCHHHHhC
Confidence            35888886   35678999999999999999999999999996   58999999999994 21    1233568999998


Q ss_pred             c--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090          125 R--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA  172 (294)
Q Consensus       125 ~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~  172 (294)
                      +  +++++.+++++.+++++|.++++..+||+| +++++|+||..|+++..
T Consensus       169 ~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        169 PFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             CCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            6  778899999999999999999999999999 79999999999999864

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.49  E-value=1.1e-12  Score=120.61  Aligned_cols=154  Identities=12%  Similarity=0.122  Sum_probs=120.3

Q ss_pred             cCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHHHHHHH
Q 041090           65 PEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMV  144 (294)
Q Consensus        65 ~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~  144 (294)
                      .+-+||.+.-....-.+.+.+-|+..+      .+..+....+       ...++.++|..+++++.+++++.++++.|.
T Consensus        49 a~mdtvTe~~MAi~~A~~GGigvIh~n------~~i~~qae~v-------~~VKv~eim~~~pvtv~p~~tI~eA~~lm~  115 (475)
T TIGR01303        49 ANMTAVAGRRMAETVARRGGIVILPQD------LPIPAVKQTV-------AFVKSRDLVLDTPITLAPHDTVSDAMALIH  115 (475)
T ss_pred             ccchhhHHHHHHHHHHHCCCEEEEeCC------CCHHHHHHHH-------hhcchhhccccCCeEECCCCCHHHHHHHHH
Confidence            445677776655544556677777743      2344432211       145666788889999999999999999999


Q ss_pred             hCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhh
Q 041090          145 QGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTII  224 (294)
Q Consensus       145 ~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im  224 (294)
                      +.+++.++|+++++++|++|..|+...                                           ....++.++|
T Consensus       116 ~~~~~~~vVvD~gklvGIVT~rDL~~~-------------------------------------------~~~~~V~dIM  152 (475)
T TIGR01303       116 KRAHGAAVVILEDRPVGLVTDSDLLGV-------------------------------------------DRFTQVRDIM  152 (475)
T ss_pred             hcCCeEEEEEECCEEEEEEEHHHhhcC-------------------------------------------CCCCCHHHHc
Confidence            999988889888899999999998321                                           0114588999


Q ss_pred             hcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090          225 TENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV  276 (294)
Q Consensus       225 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~  276 (294)
                      ..  +++++++++++.+|+++|.+++++.+||+| +|+++|+||++||++...
T Consensus       153 t~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       153 ST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI  203 (475)
T ss_pred             cC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence            77  999999999999999999999999999999 899999999999995433

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK11573 hypothetical protein; Provisional

Probab=99.48  E-value=6.9e-13  Score=120.48  Aligned_cols=128  Identities=12%  Similarity=0.118  Sum_probs=108.1

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      +..+.+|+|+|++  ++.+++.++++.++++.+.+++++.+||++++ +.++|+++.+|++... .++.......+.+++
T Consensus       183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~-~~~~~~~~~~l~~~~  261 (413)
T PRK11573        183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM-TEKKEFTKENMLRAA  261 (413)
T ss_pred             ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh-hccCcCCHHHHHhhc
Confidence            5788999999999  89999999999999999999999999999864 7899999999998533 222222223344555


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRM  176 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~  176 (294)
                       +++..++++.++.++++.|.+++.|...|+| .|...|+||.+|+++.+...+
T Consensus       262 -r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei  314 (413)
T PRK11573        262 -DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF  314 (413)
T ss_pred             -cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence             4778899999999999999999999999999 899999999999999877644

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=8.4e-13  Score=98.09  Aligned_cols=108  Identities=25%  Similarity=0.368  Sum_probs=91.1

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++..+..+.++.++++.|.+.++..+||++ +++++|+++..++++.....                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~-----------------------------   52 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG-----------------------------   52 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc-----------------------------
Confidence            456789999999999999888899999999 79999999999997643220                             


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                               .....++.++|..  ++.++.+++++.++++.|.+.+...+||++ +|+++|++|+.|+++
T Consensus        53 ---------~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          53 ---------IDLDTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             ---------CCCccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence                     0112457788866  899999999999999999999999999998 699999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.48  E-value=1.5e-12  Score=96.62  Aligned_cols=108  Identities=20%  Similarity=0.234  Sum_probs=90.6

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      +++.++++.++.++++.|.+.+...++|+++++++|+++..+++......                              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------   51 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------   51 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence            45678999999999999988888889998878899999999987532110                              


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                             ......++.++|..  ++..+++++++.++++.|.+.+...+||+++|+++|+||..|++
T Consensus        52 -------~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~  109 (111)
T cd04589          52 -------GLPSSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL  109 (111)
T ss_pred             -------CCCCCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence                   00123457788866  89999999999999999999999999999999999999999997

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.48  E-value=9.3e-13  Score=97.05  Aligned_cols=99  Identities=19%  Similarity=0.303  Sum_probs=88.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLA  136 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l  136 (294)
                      ...++.+++++.++.+.|.+.+...+||+++   +|+++|+++.+|+.+....            +|..++.++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~------------~m~~~~~~v~~~~~l   70 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN------------YIDPSPFTVSPRTSL   70 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH------------hccCCCceECCCCcH
Confidence            4567899999999999999998889999998   6999999999999744321            677788899999999


Q ss_pred             HHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          137 IEALQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       137 ~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      .++++.|.+++.+.+||+++|+++|+++..|+++
T Consensus        71 ~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~~  104 (105)
T cd04591          71 EKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLLK  104 (105)
T ss_pred             HHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhhc
Confidence            9999999999999999999899999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.47  E-value=1.5e-12  Score=95.47  Aligned_cols=102  Identities=24%  Similarity=0.399  Sum_probs=90.6

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++.++.+++++.++++.|.+++...+||+| +++++|+++..|+++.      . ....+.++|..++..+++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~------~-~~~~~~~~~~~~~~~v~~~~~l~~~   73 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA------H-PNRLVADAMTREVVTISPEASLLEA   73 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc------c-ccCCHHHHccCCCEEECCCCCHHHH
Confidence            567789999999999999999999999998 6899999999999631      1 1346888898889999999999999


Q ss_pred             HHHHHhCCCcEEEEEECCEEEEEEehHHHH
Q 041090          140 LQKMVQGKFRHLPVVENGEVIAILDITKCL  169 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll  169 (294)
                      ++.|.+++...+||+++|+++|++|..+++
T Consensus        74 ~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~  103 (105)
T cd04599          74 KRLMEEKKIERLPVLRERKLVGIITKGTIA  103 (105)
T ss_pred             HHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence            999999999999999989999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.47  E-value=4.2e-13  Score=123.36  Aligned_cols=115  Identities=14%  Similarity=0.207  Sum_probs=101.2

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      ..++.++|..+++++.+++++.++++.|.+.+++.+||+| +++++|+|+..|+...                       
T Consensus        88 ~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~-----------------------  144 (479)
T PRK07807         88 WVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV-----------------------  144 (479)
T ss_pred             hcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-----------------------
Confidence            4566788999999999999999999999999999999999 8899999999998321                       


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                          ....++.++|..  ++.++++++++.+|+++|.+++++.+||+| +|+++|+||++||++
T Consensus       145 --------------------~~~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~  202 (479)
T PRK07807        145 --------------------DRFTQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALR  202 (479)
T ss_pred             --------------------ccCCCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence                                011458899977  999999999999999999999999999999 799999999999995


Q ss_pred             HH
Q 041090          274 RV  275 (294)
Q Consensus       274 ~~  275 (294)
                      ..
T Consensus       203 ~~  204 (479)
T PRK07807        203 AT  204 (479)
T ss_pred             Hh
Confidence            43

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.47  E-value=1e-12  Score=97.14  Aligned_cols=107  Identities=19%  Similarity=0.210  Sum_probs=88.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++.++++++++.+|++.|.+++.+.+||+++ ++++|+++..|+.+.+.... .....++.+++..++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~l~~~   79 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK-AKFSLPVREVMGEPLPTVDPDAPIEEL   79 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc-cccCcCHHHHhcCCCceeCCCCcHHHH
Confidence            4577899999999999999999999999997 99999999999975443222 222457888888888889999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +++|.+ .. .+||++ +++++|+++..|+++
T Consensus        80 ~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          80 SELLDR-GN-VAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence            999987 33 467787 799999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=9.1e-13  Score=98.44  Aligned_cols=109  Identities=17%  Similarity=0.272  Sum_probs=87.4

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCC-CcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGK-FRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.+++++.++.++++.|.+.+ ...++|+++|+++|+++..|++......                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~-----------------------------   52 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIG-----------------------------   52 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcC-----------------------------
Confidence            4567899999999999998777 5667777788999999999997532210                             


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCC--CcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPS--DPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                              ......++.++|..  ++.++.++  +++.+++++|.+.+...+||+| +|+++|+||++|+++
T Consensus        53 --------~~~~~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          53 --------KDLSDLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             --------CCccccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence                    00012457788866  78888887  7899999999999999999999 799999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.47  E-value=1.3e-12  Score=96.12  Aligned_cols=101  Identities=19%  Similarity=0.219  Sum_probs=87.3

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++++++++.++.++++.|.+.+.+.++|++ +|+++|+++..|++...                                
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~--------------------------------   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS--------------------------------   49 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence            456789999999999999888888999999 89999999999986421                                


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                                  ..++.++|.+  .+.++.+++++.++++.|.+.+...+||++ +|+++|+||++|++
T Consensus        50 ------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~  104 (106)
T cd04582          50 ------------GGCCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA  104 (106)
T ss_pred             ------------ccchhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence                        0235677755  678899999999999999999999999999 68999999999997

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.7e-12  Score=97.74  Aligned_cols=118  Identities=25%  Similarity=0.280  Sum_probs=93.4

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      +++++.+++++.++++.|.+.+++.++|+++|+++|+++..+++..........                     +    
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~---------------------~----   56 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLV---------------------R----   56 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcc---------------------c----
Confidence            567789999999999999888899999999899999999999976433211000                     0    


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                        ...........++.++|..  ++.++.+++++.+++++|.+.+.+.+||+++|+++|+||..|++
T Consensus        57 --~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~  119 (121)
T cd04633          57 --DRHQERRIRNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL  119 (121)
T ss_pred             --chhhhhhhhccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence              0000111223467788866  89999999999999999999999999999989999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.47  E-value=4.2e-13  Score=120.99  Aligned_cols=123  Identities=24%  Similarity=0.246  Sum_probs=108.3

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      ...+.+++..+++++++.+++.+|.+.|...+++.+.+++ ++...||+|..|+....+...                  
T Consensus       148 ~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g------------------  209 (610)
T COG2905         148 LTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG------------------  209 (610)
T ss_pred             HHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC------------------
Confidence            4467888889999999999999999999999999888888 899999999999987655421                  


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR  274 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~  274 (294)
                                         .-...++.++|+.  ++++++.++.+.+|+-+|...+++++||.++|+++|+||..||+ +
T Consensus       210 -------------------~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl-~  267 (610)
T COG2905         210 -------------------RSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDIL-R  267 (610)
T ss_pred             -------------------CCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHH-H
Confidence                               1123579999988  99999999999999999999999999999999999999999999 5


Q ss_pred             HHHc
Q 041090          275 VVAQ  278 (294)
Q Consensus       275 ~~~~  278 (294)
                      +...
T Consensus       268 l~s~  271 (610)
T COG2905         268 LFSQ  271 (610)
T ss_pred             hhCC
Confidence            5553

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.47  E-value=1.6e-12  Score=97.87  Aligned_cols=111  Identities=28%  Similarity=0.333  Sum_probs=94.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC--------CCcccccccccccCCeEEc
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL--------RPDQTVVSKIMTRNPIFVT  131 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~--------~~~~~~v~~~~~~~~~~v~  131 (294)
                      ++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+.......        .....++.++|..++.++.
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~   81 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH   81 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEEC
Confidence            56788999999999999999999999999988999999999999643321100        1234568888888889999


Q ss_pred             CCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          132 SDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       132 ~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      .++++.++++.|.+.+.+.+||+++++++|+++..|+++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~  120 (121)
T cd04584          82 PLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR  120 (121)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhc
Confidence            999999999999999999999998889999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.47  E-value=2e-12  Score=96.68  Aligned_cols=111  Identities=33%  Similarity=0.486  Sum_probs=96.1

Q ss_pred             ccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCC
Q 041090           55 KLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDS  134 (294)
Q Consensus        55 dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~  134 (294)
                      ++|.++++++.+++++.+|...|.++++..+||++. ++++|++|.+|+++.+.......  .++.++|..+++++.++.
T Consensus         3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~   79 (117)
T COG0517           3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRL--LPVKEVMTKPVVTVDPDT   79 (117)
T ss_pred             ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCcc--ccHHHhccCCcEEECCCC
Confidence            445578999999999999999999999999999984 47999999999986654433222  268899988899999999


Q ss_pred             cHHHHHHHHHh-CCCcEEEEEE-CC-EEEEEEehHHH
Q 041090          135 LAIEALQKMVQ-GKFRHLPVVE-NG-EVIAILDITKC  168 (294)
Q Consensus       135 ~l~~~~~~~~~-~~~~~~~V~~-~~-~~vGivt~~dl  168 (294)
                      ++.++.+.|.+ +++..+||++ ++ +++|+++..|+
T Consensus        80 ~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          80 PLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             CHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence            99999999999 6999999999 64 99999999886

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.47  E-value=9.1e-13  Score=97.54  Aligned_cols=101  Identities=23%  Similarity=0.326  Sum_probs=88.2

Q ss_pred             ecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090           64 IPEGTIVSDACRRMASRR-----VDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE  138 (294)
Q Consensus        64 v~~~~sv~~a~~~~~~~~-----~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  138 (294)
                      +.+++++.++++.|.+++     ...+||+|++|+++|+++.+|+++     . . ...++.+++..++..+.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~-----~-~-~~~~v~~~~~~~~~~i~~~~~~~~   74 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL-----A-D-PDTPVSDIMDTDVISVSADDDQEE   74 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhc-----C-C-CcchHHHHhCCCCeEEcCCCCHHH
Confidence            578999999999998877     478999998899999999999863     1 1 245788898888889999999999


Q ss_pred             HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090          139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD  171 (294)
Q Consensus       139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~  171 (294)
                      +++.|...+.+.+||++ +++++|+++..++++.
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            99999999999999998 8999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1e-12  Score=100.79  Aligned_cols=128  Identities=19%  Similarity=0.246  Sum_probs=96.2

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++.+++++.++++.|.+.+++.+||+| +++++|+++..+++...........               ..+......
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~---------------~~~~~~~~~   66 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFY---------------VTLLYSVIF   66 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCccc---------------ccccccccc
Confidence            467789999999999999888888999999 7899999999999865432100000               000000000


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                      ..  +...+.....++.++|.+  ++..+.+++++.+++.+|.+.+.+.+||+++|+++|++|..|++
T Consensus        67 ~~--~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~  130 (132)
T cd04636          67 LD--ESKIKKLLGKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII  130 (132)
T ss_pred             cc--hHHHHHHcCCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence            00  222333444578899976  89999999999999999999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.46  E-value=1.6e-12  Score=95.45  Aligned_cols=100  Identities=26%  Similarity=0.280  Sum_probs=88.4

Q ss_pred             eeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHHHH
Q 041090           62 LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQ  141 (294)
Q Consensus        62 ~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~  141 (294)
                      .++.+++++.+|++.|.+.+.+.+||+|+ ++++|+++..|+++..        ..++.++|...+.+++++.++.++++
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~--------~~~~~~~~~~~~~~v~~~~~l~~a~~   74 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT--------YGDVVDYIVRGIPYVRLTSTAEEAWE   74 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc--------ccchhhhhhcCCcEEcCCCCHHHHHH
Confidence            46889999999999999999999999997 9999999999996421        23467788888889999999999999


Q ss_pred             HHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          142 KMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       142 ~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      .|.+++...+||+++|+++|+++..|++.
T Consensus        75 ~~~~~~~~~~~Vv~~~~~iGvit~~dl~~  103 (104)
T cd04594          75 VMMKNKTRWCPVVDDGKFKGIVTLDSILD  103 (104)
T ss_pred             HHHHcCcceEEEEECCEEEEEEEHHHhhc
Confidence            99999999999999889999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.46  E-value=1.3e-12  Score=95.87  Aligned_cols=99  Identities=19%  Similarity=0.237  Sum_probs=86.4

Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhh
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAF  207 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  207 (294)
                      +.++++.++.++++.|.+.+++.+||+++++++|+++..+++...                                   
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~-----------------------------------   48 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT-----------------------------------   48 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence            467899999999999998899999999889999999999986421                                   


Q ss_pred             HHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          208 IETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       208 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                               ..++.++|..  .+.++.++.++.++++.|.+++...+||+++|+++|+||..|++
T Consensus        49 ---------~~~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~  102 (104)
T cd04594          49 ---------YGDVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL  102 (104)
T ss_pred             ---------ccchhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence                     0235566755  78999999999999999999999999999999999999999997

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.46  E-value=1.6e-12  Score=95.72  Aligned_cols=104  Identities=20%  Similarity=0.379  Sum_probs=91.3

Q ss_pred             CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHH
Q 041090           59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIE  138 (294)
Q Consensus        59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~  138 (294)
                      +++++++.+.++.++++.|.+.+...+||+|+ ++++|+++..|++..      . ....+.++|...+.++.+++++.+
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~------~-~~~~~~~~~~~~~~~v~~~~~l~~   73 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK------D-PDETVEEIMSKDLVVAVPEMDIMD   73 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc------C-ccccHHHhCCCCCeEECCCCCHHH
Confidence            46778999999999999999888889999997 999999999999631      1 235688999888889999999999


Q ss_pred             HHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          139 ALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       139 ~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      +++.|.+++.+.+||++ +|+++|+++..++++
T Consensus        74 ~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          74 AARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            99999999999999999 789999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.46  E-value=1.2e-12  Score=119.02  Aligned_cols=132  Identities=13%  Similarity=0.221  Sum_probs=109.3

Q ss_pred             HHHcCCCCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC--CEEEEEEehHHHHHHHHHHHHHHHhh
Q 041090          107 VIAEGLRPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVEN--GEVIAILDITKCLYDAISRMEKAAEQ  182 (294)
Q Consensus       107 ~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~vGivt~~dll~~~~~~~~~~~~~  182 (294)
                      ++.+..+..+.+++++|.+  ++++++.++++.++++.+.+++++++||+++  ++++|+++.+|++.....        
T Consensus       181 ~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~--------  252 (408)
T TIGR03520       181 ILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK--------  252 (408)
T ss_pred             HHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc--------
Confidence            3444456778899999986  6889999999999999999999999999983  689999999999753110        


Q ss_pred             chhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCe
Q 041090          183 GSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSK  261 (294)
Q Consensus       183 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~  261 (294)
                                                       ...++.++|.   ++.++++++++.++++.|.+++.+.++|+| .|.
T Consensus       253 ---------------------------------~~~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~  296 (408)
T TIGR03520       253 ---------------------------------KNFDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGG  296 (408)
T ss_pred             ---------------------------------CCCCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCC
Confidence                                             0123566663   588999999999999999999999999999 599


Q ss_pred             EeEeeehhHHHHHHHHccCCC
Q 041090          262 IQGILTSKDVLMRVVAQNLSP  282 (294)
Q Consensus       262 ~vGivt~~Dil~~~~~~~~~~  282 (294)
                      ++|+||..||++.++.+-.+.
T Consensus       297 ~~GiVT~eDileeivgei~de  317 (408)
T TIGR03520       297 TSGLVTLEDIIEEIVGDISDE  317 (408)
T ss_pred             EEEEEEHHHHHHHHhCCCCCc
Confidence            999999999998887765443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.46  E-value=1.8e-12  Score=95.72  Aligned_cols=104  Identities=22%  Similarity=0.305  Sum_probs=89.8

Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      .++..+.++.++.++++.|.+.++..++|++ +++++|+++..|++....                              
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------   51 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------   51 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence            3567789999999999999988899999999 789999999999865321                              


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                                  ...++.++|..  .+..+.+++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus        52 ------------~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~  107 (109)
T cd04583          52 ------------EAKSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV  107 (109)
T ss_pred             ------------cCCcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence                        11346777866  889999999999999999999999999999 79999999999997

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.7e-12  Score=98.02  Aligned_cols=110  Identities=23%  Similarity=0.355  Sum_probs=92.9

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC-------C--CcccccccccccCCeEE
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL-------R--PDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~-------~--~~~~~v~~~~~~~~~~v  130 (294)
                      +++.+++++++.+|++.|.+++++.+||+|+ |+++|+++..|+.+.+.....       +  ....++.++|..+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV   80 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence            5678999999999999999999999999996 999999999999754321100       0  01346888888889999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      .+++++.++++.|.+++...+||++ +++++|+++..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            9999999999999999999999998 799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.46  E-value=2e-12  Score=95.71  Aligned_cols=107  Identities=19%  Similarity=0.293  Sum_probs=90.5

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      ++..++++.++.++++.|.+.+.+.+||+++++++|+++..|+++.....                              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~------------------------------   51 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASG------------------------------   51 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcC------------------------------
Confidence            45678999999999999998888899999989999999999987643210                              


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                              .....++.++|..  ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+|+..|++
T Consensus        52 --------~~~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~  109 (111)
T cd04611          52 --------PDLQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL  109 (111)
T ss_pred             --------CCCCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence                    0023457788866  899999999999999999999999999998 69999999999997

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.6e-12  Score=98.52  Aligned_cols=120  Identities=27%  Similarity=0.373  Sum_probs=93.1

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      ++.++.++.++.+++++|.+.+.+.+||++ + |+++|+++..+++...........                .....  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~----------------~~~~~--   63 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNK----------------IKTGN--   63 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhcc----------------ccccc--
Confidence            456789999999999999988888999998 5 899999999999865432100000                00000  


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                              .......++.++|..  .+.++++++++.++++.|.+.+.+.+||++ +|+++|+||..||++
T Consensus        64 --------~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          64 --------GLEAINEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             --------cchhhhcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence                    011123467888866  899999999999999999999999999999 599999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=3.2e-12  Score=94.91  Aligned_cols=110  Identities=23%  Similarity=0.337  Sum_probs=90.9

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      ++..+++++++.++++.|.+.+.+.+||+++++++|+++..|++.......                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~-----------------------------   52 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN-----------------------------   52 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc-----------------------------
Confidence            456789999999999999988889999999669999999999986432200                             


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM  273 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~  273 (294)
                             ......++.++|..  ++..+.+++++.++++.|.+.+.+.+||+++++++|+|++.|+++
T Consensus        53 -------~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~  111 (112)
T cd04802          53 -------LKPREVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVM  111 (112)
T ss_pred             -------CCcccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence                   00112457788865  889999999999999999999999999999669999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.5e-12  Score=96.60  Aligned_cols=106  Identities=14%  Similarity=0.234  Sum_probs=89.9

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++.+++++.++++.|.+.+...+||++ +|+++|+++..++.+....                              
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~------------------------------   51 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE------------------------------   51 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh------------------------------
Confidence            456789999999999999888888999999 6999999999998754321                              


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                               .....++.++|..  ++.++.+++++.++++.|.+++...+||++ +|+++|++|..|+.
T Consensus        52 ---------~~~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~  109 (111)
T cd04639          52 ---------GGPDAPVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG  109 (111)
T ss_pred             ---------cCCCCcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence                     0012357788866  899999999999999999999999999999 59999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=2.7e-12  Score=94.64  Aligned_cols=110  Identities=27%  Similarity=0.443  Sum_probs=93.3

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++.++++++++.++++.|.+++...+||++++++++|+++..|++....... ......+.+++..++..+.+++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGG-LDPLVTVGDVMTRDVVTVSPDTSLEEA   80 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhcc-CCccccHHHHhcCCceecCCCcCHHHH
Confidence            4677899999999999999999999999998899999999999976553322 221222667788888889999999999


Q ss_pred             HHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.|.+.+.+.++|++ +++++|+++..++++
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            9999999899999999 799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.45  E-value=3.1e-12  Score=94.65  Aligned_cols=107  Identities=16%  Similarity=0.272  Sum_probs=90.3

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      ++..+++++++.++++.|...+++.+||+++++++|+++..++++.....                              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~------------------------------   51 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG------------------------------   51 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc------------------------------
Confidence            56678899999999999998889999999888999999999997642210                              


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                               ....++.++|..  ++.++.+++++.++++.|.+.+.+.+||++ +|+++|+||+.|+++
T Consensus        52 ---------~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          52 ---------LELAKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             ---------ccccCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence                     001356777765  899999999999999999999999999999 599999999999973

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.45  E-value=1.7e-12  Score=96.59  Aligned_cols=108  Identities=22%  Similarity=0.313  Sum_probs=91.3

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++.+++++.++++.|.+.++..+||++ +++++|+++..++.......                             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~-----------------------------   52 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDP-----------------------------   52 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcc-----------------------------
Confidence            466789999999999999988888999999 78999999999997532110                             


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeC--CeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTG--SKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~vGivt~~Dil  272 (294)
                              ......++.++|.+  .+.++.+++++.++++.|...+.+.+||+++  |+++|++|..|++
T Consensus        53 --------~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~  112 (114)
T cd04613          53 --------SLYDLVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL  112 (114)
T ss_pred             --------cccccEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence                    00112568888876  8999999999999999999999999999986  8999999999997

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.45  E-value=4.6e-13  Score=123.36  Aligned_cols=138  Identities=17%  Similarity=0.201  Sum_probs=111.4

Q ss_pred             cEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHHHHHHHh-----CCCcEEEEEE-CCEEEEEEehH
Q 041090           93 LLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQ-----GKFRHLPVVE-NGEVIAILDIT  166 (294)
Q Consensus        93 ~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~-----~~~~~~~V~~-~~~~vGivt~~  166 (294)
                      ++++.++..+-  ..+..-..+.+.+++++|..++++++++.++.++++.|.+     .....++|+| +++++|+++.+
T Consensus       109 ~lL~~l~~~er--~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~  186 (449)
T TIGR00400       109 QLLASSTEEER--KAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIR  186 (449)
T ss_pred             HHHHcCCHHHH--HHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHH
Confidence            45556666553  2233334566789999999999999999999999999975     3456788888 88999999999


Q ss_pred             HHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHH
Q 041090          167 KCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKM  246 (294)
Q Consensus       167 dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m  246 (294)
                      |++..                                           ....++.++|.+  ++.++.+++++.+|++.|
T Consensus       187 dLl~a-------------------------------------------~~~~~v~~im~~--~~~~v~~~~~~~eal~~m  221 (449)
T TIGR00400       187 DLILA-------------------------------------------KPEEILSSIMRS--SVFSIVGVNDQEEVARLI  221 (449)
T ss_pred             HHhcC-------------------------------------------CCCCcHHHHhCC--CCeeECCCCCHHHHHHHH
Confidence            98631                                           012458889976  899999999999999999


Q ss_pred             HHhCCceeEEee-CCeEeEeeehhHHHHHHHH
Q 041090          247 REFRSNSALIVT-GSKIQGILTSKDVLMRVVA  277 (294)
Q Consensus       247 ~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~  277 (294)
                      .++++..+||+| +|+++|+||..|+++.+..
T Consensus       222 ~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~  253 (449)
T TIGR00400       222 QKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS  253 (449)
T ss_pred             HHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence            999999999999 7999999999999955544

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.45  E-value=9.8e-13  Score=125.07  Aligned_cols=122  Identities=11%  Similarity=0.220  Sum_probs=102.9

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      ..+++++|.++..++++++++.++.+.|.+++.+.+||+| +++++|+++..|+.+.....                   
T Consensus       446 ~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~-------------------  506 (574)
T PRK01862        446 TTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDK-------------------  506 (574)
T ss_pred             hCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcc-------------------
Confidence            5689999998888999999999999999988999999999 78999999999997633210                   


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-C--CeEeEeeehhHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-G--SKIQGILTSKDV  271 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~--g~~vGivt~~Di  271 (294)
                                        +.....++.++|.+  ++.++++++++.+++++|.+++.+.+||+| +  ++++|+||++|+
T Consensus       507 ------------------~~~~~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DI  566 (574)
T PRK01862        507 ------------------RDTTDKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSL  566 (574)
T ss_pred             ------------------cccccchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHH
Confidence                              00012457788876  889999999999999999999999999998 4  589999999999


Q ss_pred             HHHHH
Q 041090          272 LMRVV  276 (294)
Q Consensus       272 l~~~~  276 (294)
                      ++.+.
T Consensus       567 l~~l~  571 (574)
T PRK01862        567 LDAYR  571 (574)
T ss_pred             HHHHH
Confidence            96553

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.45  E-value=2.4e-12  Score=95.72  Aligned_cols=109  Identities=15%  Similarity=0.222  Sum_probs=90.2

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      ++.++.+++++.++++.|.+.+.+.++|+++++++|+++..+++......                      +       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~----------------------~-------   52 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQ----------------------G-------   52 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhc----------------------C-------
Confidence            45678999999999999988888899999889999999999997533210                      0       


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                             ......++.++|..  .+.++.+++++.++++.|.+.+..++||++ +|+++|+||..|++
T Consensus        53 -------~~~~~~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~  111 (113)
T cd04587          53 -------LDPESTLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT  111 (113)
T ss_pred             -------CCcCcCCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence                   00011457788866  888999999999999999999999999998 69999999999997

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=9.9e-13  Score=100.06  Aligned_cols=121  Identities=18%  Similarity=0.260  Sum_probs=88.8

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      .+.++++++++.++++.|.++++..+||+| +|+++|+++..|++............                  ...  
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~------------------~~~--   61 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLY------------------RTI--   61 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcc------------------cch--
Confidence            456789999999999999988999999999 79999999999997643221000000                  000  


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                       .+. ++...  .....+.+..  ++.++.+++++.+|+++|.+++.+++||+| +|+++|+||..|++
T Consensus        62 -~~~-~~~~~--~~~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil  124 (126)
T cd04642          62 -TFK-ELSEK--FTDSDGVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII  124 (126)
T ss_pred             -hhh-hhhhh--cccccccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence             000 00000  0112234544  789999999999999999999999999999 69999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.44  E-value=2e-12  Score=96.52  Aligned_cols=105  Identities=23%  Similarity=0.339  Sum_probs=90.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcC--CC
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTS--DS  134 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~--~~  134 (294)
                      ++.++.+++++.+|.+.|.+++.+.+||+|+   +|+++|+++..|++. . . .  . ..++.++|...+..+..  ++
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~-~-~-~--~-~~~v~~~~~~~~~~~~~~~~~   76 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF-L-T-D--S-ETPLSEVMTPREVLVVAPTGI   76 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh-h-h-c--c-CCCHHHhcCCCceEEECCCCC
Confidence            5678899999999999999899999999997   789999999999852 2 1 1  1 34688999877777766  99


Q ss_pred             cHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          135 LAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       135 ~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++.++++.|.+++...+||++ +|+++|++|..++++
T Consensus        77 ~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          77 TLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            999999999999999999998 799999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.44  E-value=1.6e-12  Score=96.18  Aligned_cols=106  Identities=25%  Similarity=0.379  Sum_probs=90.9

Q ss_pred             CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcC-CCcHH
Q 041090           59 SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTS-DSLAI  137 (294)
Q Consensus        59 ~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~-~~~l~  137 (294)
                      +++..+.+++++.++++.|.+++...+||+|++|+++|+++.+|++..     .. ...++.++|...+..+.. ++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~-----~~-~~~~v~~~~~~~~~~~~~~~~~l~   75 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE-----TD-LDKPVSEVMTPENLLTTVEGTSLE   75 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec-----cc-CCCCHHHhcccCceEEecCCCCHH
Confidence            356789999999999999999999999999988999999999998521     11 245788888776666666 99999


Q ss_pred             HHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH
Q 041090          138 EALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       138 ~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~  170 (294)
                      ++++.|.+.+.+.+||++ +|+++|+++..|+++
T Consensus        76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          76 EALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            999999999999999999 799999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=3.3e-12  Score=99.57  Aligned_cols=110  Identities=26%  Similarity=0.429  Sum_probs=93.2

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC--C------------------------
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL--R------------------------  113 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~--~------------------------  113 (294)
                      +++++++++++.++++.|.+++++.+||+|+ ++++|+++..|+++.+.....  .                        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            5678999999999999999999999999997 999999999999754432221  0                        


Q ss_pred             -----CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          114 -----PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       114 -----~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                           ....++.++|..++.++++++++.+++..|.+.+.+.+||+++++++|+++..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence                 023467788888899999999999999999999999999998889999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=3.4e-12  Score=94.88  Aligned_cols=109  Identities=25%  Similarity=0.356  Sum_probs=90.2

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      ++.++.+++++.++++.|.+.+.+.++|+++|+++|+++..+++......                      +       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~----------------------~-------   52 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAE----------------------G-------   52 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhc----------------------c-------
Confidence            56778999999999999998889999999989999999999986321110                      0       


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                             ......++.++|..  .+.++.+++++.++++.|.+.+.+++||++ +|+++|+|++.|++
T Consensus        53 -------~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~  111 (113)
T cd04622          53 -------RDPDTTTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA  111 (113)
T ss_pred             -------CCcccCCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence                   00111347888866  899999999999999999999999999998 69999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.8e-12  Score=96.82  Aligned_cols=112  Identities=14%  Similarity=0.277  Sum_probs=89.3

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      +++++++++++.++++.|.+.+++.+||++ +++++|+++..++++........                          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~--------------------------   55 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENL--------------------------   55 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCch--------------------------
Confidence            467889999999999999988999999999 78999999999997643221000                          


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                           . ...+...++.++|..  .+.++.+++++.++++.|.+.+  .+||++ +|+++|+||+.|+++
T Consensus        56 -----~-~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          56 -----D-LERLVDLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             -----h-HHHHhCCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence                 0 000123568888876  8999999999999999998754  599998 799999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.44  E-value=1.5e-12  Score=119.79  Aligned_cols=116  Identities=26%  Similarity=0.388  Sum_probs=103.3

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHHHcCCCCcccccccccc-cC
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN---ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT-RN  126 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~---~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~~  126 (294)
                      .++++.|.++++++++++++.+|+++|.+++++.+||+|++   ++++|+++.+|++. ..    . ...++.++|. .+
T Consensus        80 k~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~-~~----~-~~~~V~dvm~~~~  153 (450)
T TIGR01302        80 KRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF-VK----D-KGKPVSEVMTREE  153 (450)
T ss_pred             ccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh-hh----c-CCCCHHHhhCCCC
Confidence            34677888899999999999999999999999999999987   79999999999963 21    1 2467999998 48


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA  172 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~  172 (294)
                      ++++++++++.++++.|.+++.+.+||+| +|+++|+||..|+++..
T Consensus       154 ~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       154 VITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            89999999999999999999999999999 89999999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.43  E-value=2.4e-12  Score=95.76  Aligned_cols=108  Identities=19%  Similarity=0.265  Sum_probs=90.2

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      +++++.+++++.++++.|.+.+...++|++ +|+++|+++..++++......                            
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~----------------------------   54 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL----------------------------   54 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC----------------------------
Confidence            455678999999999999888888999998 789999999999876433210                            


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                               .....++.++|..  .+.++.+++++.+++++|...+...+||++ +|+++|+|+..||+
T Consensus        55 ---------~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~  112 (114)
T cd04604          55 ---------DILTLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLL  112 (114)
T ss_pred             ---------ccccCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhh
Confidence                     0111357888866  788999999999999999999999999998 89999999999997

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=5.1e-12  Score=96.32  Aligned_cols=121  Identities=30%  Similarity=0.392  Sum_probs=92.4

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++..+.++.++.+++++|.+.+.+.+||++ +++++|+++..|++..............                     
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~---------------------   60 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGD---------------------   60 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhh---------------------
Confidence            456789999999999999999999999999 7999999999999764322110000000                     


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee---CCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT---GSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~g~~vGivt~~Dil  272 (294)
                         ...-.......++.++|..  +++++.+++++.++++.|.+.+...+||++   +|+++|+||+.|++
T Consensus        61 ---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~  126 (128)
T cd04632          61 ---RSGEKERMLDLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL  126 (128)
T ss_pred             ---hhhhhhhhccCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence               0000011233568888876  899999999999999999999999999985   49999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.43  E-value=1.6e-12  Score=110.87  Aligned_cols=117  Identities=22%  Similarity=0.297  Sum_probs=107.1

Q ss_pred             cchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090           51 RTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI  128 (294)
Q Consensus        51 ~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  128 (294)
                      +.|.|+|.|  +..++.+++++++-.++-.+++++.+||+|...+++|++|-+|+..       .....++..+|.++|+
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~-------~~~~t~ieKVMtknp~  260 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLD-------KKPSTTIEKVMTKNPI  260 (432)
T ss_pred             eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhc-------CCCCccHHHHhccCCe
Confidence            568999995  8889999999999999999999999999999999999999999973       2336789999999999


Q ss_pred             EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      ++.+.+++..+.+.|.-.++..+||++ +.+++|+||+.|+++.+..
T Consensus       261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         261 TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999 8999999999999987654

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3e-12  Score=96.59  Aligned_cols=117  Identities=24%  Similarity=0.376  Sum_probs=92.7

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++.+++++.++.+.|.+.+++.+||++ +|+++|+++..++++......... ..                      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~-~~----------------------   58 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDN-GE----------------------   58 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccc-cc----------------------
Confidence            466789999999999999999999999999 699999999999976433210000 00                      


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                       ..    .......++.++|..  ++.++.+++++.+++++|.+.+.+.+||++ +|+++|+||..|++
T Consensus        59 -~~----~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~  120 (122)
T cd04803          59 -ES----LTKERDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL  120 (122)
T ss_pred             -cc----cccccCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence             00    011123567888866  899999999999999999999999999999 58999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=2e-12  Score=98.45  Aligned_cols=115  Identities=21%  Similarity=0.333  Sum_probs=87.1

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++..++++.++++.|.+.+.+.++|++ +|+++|+++..|+......+....                  +      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~------------------~------   57 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQE------------------G------   57 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHH------------------c------
Confidence            456789999999999999888888999999 789999999999875321100000                  0      


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeE--e----CCCCcHHHHHHHHHHhCCceeEEee-C-CeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAI--V----SPSDPVAVAAKKMREFRSNSALIVT-G-SKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~--v----~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~vGivt~~Dil~  273 (294)
                             .......++.++|.+  ++..  +    .+++++.+++++|.+++.+.+||+| + |+++|+||+.|+++
T Consensus        58 -------~~~~~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          58 -------GISRSELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             -------CCCchheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence                   000122457788865  4433  3    3689999999999999999999999 5 79999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.42  E-value=4.3e-12  Score=93.94  Aligned_cols=107  Identities=22%  Similarity=0.331  Sum_probs=89.6

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      +++.+.+++++.++++.|.+.+...+||+++++++|+++..|++......                              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~------------------------------   51 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEG------------------------------   51 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcC------------------------------
Confidence            56778999999999999998888899999889999999999987532110                              


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                              ......+.++|..  ++.++.+++++.++++.|.+.+.+.+||++ +|+++|+||..|++
T Consensus        52 --------~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~  109 (111)
T cd04612          52 --------REATVLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL  109 (111)
T ss_pred             --------cccccCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                    0000245677766  899999999999999999999999999999 59999999999997

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=2.4e-12  Score=97.15  Aligned_cols=118  Identities=25%  Similarity=0.393  Sum_probs=92.3

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++.+++++.++++.|.+.+.+.+||++ +|+++|+++..+++.........                        ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~------------------------~~   57 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSV------------------------ED   57 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccc------------------------cc
Confidence            467789999999999999988889999999 79999999999997532110000                        00


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                          ..........++.++|..  ++..+.+++++.++++.|.+.+.+.+||++ +|+++|++|+.|+++
T Consensus        58 ----~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          58 ----QQRTQTKASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             ----hhhhhhhccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence                000011223567788866  899999999999999999999999999998 699999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=5.6e-12  Score=95.13  Aligned_cols=118  Identities=27%  Similarity=0.337  Sum_probs=92.1

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      ++.++++++++.++++.|.+.+++.+||+++|+++|+++..++++.............                      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~----------------------   59 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETE----------------------   59 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchH----------------------
Confidence            4567899999999999999889999999998899999999999865432110000000                      


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                         ...  .....++.++|..  +++.+.+++++.++++.|.+.+...+||++ +|+++|++|+.|++
T Consensus        60 ---~~~--~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll  120 (122)
T cd04637          60 ---KDL--ATLNRRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL  120 (122)
T ss_pred             ---HHH--HHHHhHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence               000  0112347788866  899999999999999999999999999998 69999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.42  E-value=3e-12  Score=118.64  Aligned_cols=114  Identities=23%  Similarity=0.204  Sum_probs=100.4

Q ss_pred             ccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC--CeE
Q 041090           55 KLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN--PIF  129 (294)
Q Consensus        55 dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~--~~~  129 (294)
                      ..|.++++++.+++|+.+|+++|.+++++.+||+|+   +++++|++|.+|+. ...     ....++.++|.++  +++
T Consensus       104 ~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvt  177 (505)
T PLN02274        104 VGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVT  177 (505)
T ss_pred             ccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEE
Confidence            346789999999999999999999999999999997   48999999999995 221     2356899999866  779


Q ss_pred             EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      +.+++++.++++.|.+++.+.+||+| +++++|+||+.|+++....
T Consensus       178 v~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        178 APAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             ECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            99999999999999999999999999 8999999999999987654

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=7.4e-12  Score=92.09  Aligned_cols=104  Identities=25%  Similarity=0.434  Sum_probs=90.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEA  139 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~  139 (294)
                      ++.++.++.++.+++..|.+.+++.+||++++++++|+++..++++.       ....++.++|..++.++..++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~-------~~~~~~~~~~~~~~~~v~~~~~l~~~   74 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN-------PEEEQLALLMTRDPPTVSPDDDVKEA   74 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc-------cccchHHHHhcCCCceECCCCCHHHH
Confidence            46788999999999999999899999999988999999999999631       11245777787888889999999999


Q ss_pred             HHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          140 LQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       140 ~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      ++.|.+.+.+.+||+++|+++|+++..++++
T Consensus        75 ~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~~  105 (106)
T cd04638          75 AKLMVENNIRRVPVVDDGKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence            9999999999999999779999999998864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.42  E-value=3.7e-12  Score=93.72  Aligned_cols=104  Identities=22%  Similarity=0.355  Sum_probs=89.1

Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      +++++++.+.++.++++.|.+.+...++|+++++++|+++..+++..                                 
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~---------------------------------   48 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK---------------------------------   48 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------------
Confidence            45677899999999999998888888999888899999999998631                                 


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                ....++.++|..  .+.++.+++++.++++.|.+++.+.+||++ +|+++|+|+..|+++
T Consensus        49 ----------~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          49 ----------DPDETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             ----------CccccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence                      012357788865  789999999999999999999999999998 789999999999983

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.41  E-value=3.2e-12  Score=96.14  Aligned_cols=119  Identities=30%  Similarity=0.371  Sum_probs=92.5

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      ++.++.++.++.++++.|.+.++..+||+++|+++|+++..+++..........                     ...  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~---------------------~~~--   58 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTL---------------------DIW--   58 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccccc---------------------cch--
Confidence            456789999999999999988889999999889999999999976432110000                     000  


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                          .........++.++|..  ++.++.+++++.+++..|.+.+.+.+||++ +|+++|+||..|+++
T Consensus        59 ----~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          59 ----ELYYLLSKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ----hhhhhhcccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence                00000112457788866  899999999999999999999999999999 599999999999983

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.40  E-value=2.2e-12  Score=119.25  Aligned_cols=108  Identities=14%  Similarity=0.172  Sum_probs=92.8

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNF  201 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  201 (294)
                      .++++++++++.++++.|.++++..+||+|+    ++++|+||..|+...                              
T Consensus       106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~------------------------------  155 (502)
T PRK07107        106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS------------------------------  155 (502)
T ss_pred             CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc------------------------------
Confidence            4468999999999999999999999999984    799999999998421                              


Q ss_pred             CChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          202 SAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                                 ......++.++|....+++++.+++++.+|+++|.++++..+||+| +|+++|+||++|+++.
T Consensus       156 -----------~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        156 -----------RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             -----------ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence                       0012356899997544789999999999999999999999999999 7999999999999954

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.40  E-value=7.5e-12  Score=92.75  Aligned_cols=105  Identities=20%  Similarity=0.322  Sum_probs=87.2

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      ++.+++++.++.++.+.|.+.+...++|++ + |+++|+++..++++.....                            
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~----------------------------   53 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG----------------------------   53 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence            456789999999999999988889999998 6 8999999999997643210                            


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                                 ....++.+++ .  ++.++.+++++.++++.|.+++.+.+||++ +|+++|+||+.|++
T Consensus        54 -----------~~~~~~~~~~-~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  109 (111)
T cd04590          54 -----------EEDLDLRDLL-R--PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL  109 (111)
T ss_pred             -----------CCcCCHHHHh-c--CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence                       0002345555 3  578899999999999999999999999999 69999999999997

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.40  E-value=3.2e-12  Score=118.37  Aligned_cols=114  Identities=23%  Similarity=0.300  Sum_probs=100.9

Q ss_pred             hhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHHHcCCCCccccccccccc--CC
Q 041090           53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN---ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NP  127 (294)
Q Consensus        53 v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~---~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~  127 (294)
                      ..+.|..+++++++++|+.+|+++|.+++++.+||+|++   ++++|+++.+|+. ..     .....++.++|.+  ++
T Consensus        98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~-~~-----~~~~~~V~diMt~~~~l  171 (495)
T PTZ00314         98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID-FV-----KDKSTPVSEVMTPREKL  171 (495)
T ss_pred             cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh-hc-----ccCCCCHHHhhCCcCCc
Confidence            556778899999999999999999999999999999973   8999999999995 21     1225679999987  78


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA  172 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~  172 (294)
                      +++.+++++.+++++|.+++.+.+||+| +++++|+||..|+++..
T Consensus       172 vtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        172 VVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             eEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence            8999999999999999999999999999 89999999999999764

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.39  E-value=6.2e-12  Score=116.87  Aligned_cols=132  Identities=21%  Similarity=0.310  Sum_probs=108.5

Q ss_pred             cccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090          117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER  195 (294)
Q Consensus       117 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (294)
                      +.++++|..+++++++++++.++++.|.+++++.+||++ +++++|+++..|+....                       
T Consensus        87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~-----------------------  143 (486)
T PRK05567         87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET-----------------------  143 (486)
T ss_pred             hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc-----------------------
Confidence            346678888999999999999999999999999999999 89999999999985310                       


Q ss_pred             hhCCCCCChhhhHHHHHHhhcccchhhhhh-cCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          196 QWGSNFSAPYAFIETLRERMFKPSLSTIIT-ENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                         ....++.++|. +  +++++.+++++.++++.|.+++++.+||+| +|+++|+||.+||++
T Consensus       144 -------------------~~~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~  202 (486)
T PRK05567        144 -------------------DLSQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEK  202 (486)
T ss_pred             -------------------cCCCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhh
Confidence                               12245788886 4  899999999999999999999999999999 899999999999996


Q ss_pred             HHHHccC---CCCcceeeeccc
Q 041090          274 RVVAQNL---SPELTLVERFIM  292 (294)
Q Consensus       274 ~~~~~~~---~~~~~~v~~~~~  292 (294)
                      .+...+.   ....+.|...|.
T Consensus       203 ~~~~p~a~~d~~g~l~V~aai~  224 (486)
T PRK05567        203 AEEFPNACKDEQGRLRVGAAVG  224 (486)
T ss_pred             hhhCCCcccccCCCEEEEeecc
Confidence            6544332   123456666664

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.39  E-value=1.1e-11  Score=93.18  Aligned_cols=118  Identities=31%  Similarity=0.412  Sum_probs=92.4

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++++++++.++++.|.+.++..+||++ +++++|+++..++............                        
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~------------------------   57 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLS------------------------   57 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccch------------------------
Confidence            456789999999999999888888999999 7999999999998754321100000                        


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~  273 (294)
                         .... ......++.++|..  .+.++.+++++.++++.|.+.+...+||+++|+++|+++..|+++
T Consensus        58 ---~~~~-~~~~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~  120 (121)
T cd04584          58 ---EHEL-YLLLKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR  120 (121)
T ss_pred             ---hhhh-hhhcCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhc
Confidence               0000 01223557888866  899999999999999999999999999998899999999999973

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.39  E-value=1.4e-11  Score=92.03  Aligned_cols=110  Identities=26%  Similarity=0.389  Sum_probs=93.8

Q ss_pred             cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCC
Q 041090          123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFS  202 (294)
Q Consensus       123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  202 (294)
                      +...++++.++.++.++...|.++++..+||++.++++|++|..|+++.......                         
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~-------------------------   59 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGK-------------------------   59 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCC-------------------------
Confidence            3367889999999999999999999999999997799999999999876543100                         


Q ss_pred             ChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHH-hCCceeEEee-CC-eEeEeeehhHHH
Q 041090          203 APYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMRE-FRSNSALIVT-GS-KIQGILTSKDVL  272 (294)
Q Consensus       203 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd-~g-~~vGivt~~Dil  272 (294)
                                   ...++.++|..  ++.++.++.++.++.++|.+ ++++.+||++ ++ +++|++|+.|++
T Consensus        60 -------------~~~~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          60 -------------RLLPVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             -------------ccccHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                         00157888876  89999999999999999999 6999999999 54 999999999974

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.38  E-value=6.2e-12  Score=115.23  Aligned_cols=129  Identities=15%  Similarity=0.225  Sum_probs=108.7

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTD-ANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d-~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      +..+.+|+++|++  ++.+++.+.++.++++.+.+++++.+||++ +.+.++|+++.+|++.+......   ........
T Consensus       202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~~~  278 (429)
T COG1253         202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRVLV  278 (429)
T ss_pred             ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhhcc
Confidence            5688999999999  889999999999999999999999999999 45789999999999876544322   11122222


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKA  179 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~  179 (294)
                       .+++.+++..++.++++.|++.+.|...|+| .|.+.|+||..|+++.....+...
T Consensus       279 -~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de  334 (429)
T COG1253         279 -RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDE  334 (429)
T ss_pred             -cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCc
Confidence             3888999999999999999999999999999 899999999999999887754433

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.38  E-value=1.2e-11  Score=92.39  Aligned_cols=103  Identities=19%  Similarity=0.329  Sum_probs=85.7

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNF  201 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  201 (294)
                      ++.++.+++++.++++.|.+.+...++|+|+    |+++|+++..|++..  .                           
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~--~---------------------------   53 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL--T---------------------------   53 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh--h---------------------------
Confidence            5667889999999999998888889999983    799999999887531  0                           


Q ss_pred             CChhhhHHHHHHhhcccchhhhhhcCCceeEeCC--CCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          202 SAPYAFIETLRERMFKPSLSTIITENAKVAIVSP--SDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                                   ....++.++|..  .+.++..  ++++.++++.|.+.+...+||++ +|+++|+||++|++
T Consensus        54 -------------~~~~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~  112 (114)
T cd04602          54 -------------DSETPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK  112 (114)
T ss_pred             -------------ccCCCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence                         011347788865  6666655  99999999999999999999998 79999999999997

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.37  E-value=7.6e-12  Score=115.11  Aligned_cols=115  Identities=20%  Similarity=0.332  Sum_probs=98.9

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C---CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N---GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGV  193 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~  193 (294)
                      ...+.+.+++++++++.++.++++.|.+++++++||++ +   ++++|+++..|++...                     
T Consensus        81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~---------------------  139 (450)
T TIGR01302        81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK---------------------  139 (450)
T ss_pred             cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence            45566777899999999999999999999999999999 5   6999999999986310                     


Q ss_pred             HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                                           ....++.++|.+ .+++++.+++++.++++.|.+++.+.+||+| +|+++|+||++||+
T Consensus       140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl  197 (450)
T TIGR01302       140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV  197 (450)
T ss_pred             ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence                                 013468888861 2799999999999999999999999999999 79999999999999


Q ss_pred             HHH
Q 041090          273 MRV  275 (294)
Q Consensus       273 ~~~  275 (294)
                      +..
T Consensus       198 ~~~  200 (450)
T TIGR01302       198 KRR  200 (450)
T ss_pred             hcc
Confidence            654

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.37  E-value=8.9e-12  Score=92.07  Aligned_cols=105  Identities=24%  Similarity=0.418  Sum_probs=87.3

Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      +++..+..+.++.++++.|.+.+...++|++ +|+++|+++..+++...                               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------------------------   50 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET-------------------------------   50 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence            3567789999999999999888888999999 78999999998875210                               


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCC-CCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSP-SDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                 ....++.++|..  .+..+.+ ++++.++++.|.+.+.+.+||++ +|+++|+||.+|+++
T Consensus        51 -----------~~~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          51 -----------DLDKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             -----------cCCCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence                       012457778755  5666666 99999999999999999999998 799999999999973

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.37  E-value=3.7e-12  Score=94.24  Aligned_cols=99  Identities=22%  Similarity=0.316  Sum_probs=83.2

Q ss_pred             EcCCCcHHHHHHHHHhCC-----CcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          130 VTSDSLAIEALQKMVQGK-----FRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       130 v~~~~~l~~~~~~~~~~~-----~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      +.+++++.++++.|.+.+     +..+||++ +++++|+++..+++...                               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~-------------------------------   50 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD-------------------------------   50 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence            467889999999998766     46788998 78999999988885310                               


Q ss_pred             hhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          204 PYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                  ...++.+++..  ++..+.+++++.++++.|...+...+||++ +|+++|+||..|+++
T Consensus        51 ------------~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~  107 (109)
T cd04606          51 ------------PDTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVID  107 (109)
T ss_pred             ------------CcchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhh
Confidence                        11346777755  789999999999999999999999999998 799999999999984

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.36  E-value=1.7e-11  Score=90.43  Aligned_cols=106  Identities=25%  Similarity=0.448  Sum_probs=85.9

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPY  205 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  205 (294)
                      ++.++.+++++.++++.|.+.+++.+||+++++++|+++..++.+......                             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~-----------------------------   52 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGK-----------------------------   52 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhccc-----------------------------
Confidence            456789999999999999988999999999889999999999876432200                             


Q ss_pred             hhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       206 ~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                              .....++.++|..  ++.++++++++.+++++|.+ .. .+||++ +|+++|+||++|++
T Consensus        53 --------~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~  108 (110)
T cd04609          53 --------AKFSLPVREVMGE--PLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLL  108 (110)
T ss_pred             --------cccCcCHHHHhcC--CCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhh
Confidence                    0012457778865  78999999999999999887 43 478887 79999999999997

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.36  E-value=1.1e-11  Score=93.01  Aligned_cols=110  Identities=18%  Similarity=0.222  Sum_probs=88.8

Q ss_pred             CceeecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHHc--CCCCcccccccccccCCeEEcCCCcH
Q 041090           60 KALTIPEGTIVSDACRRMASRR-VDAVLLTDANALLSGIVTDKDITTRVIAE--GLRPDQTVVSKIMTRNPIFVTSDSLA  136 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~-~~~lpV~d~~~~~~Givt~~di~~~~~~~--~~~~~~~~v~~~~~~~~~~v~~~~~l  136 (294)
                      +++++.+++++.+|.+.|...+ ++.+||+|+ |+++|+++..|+++.+...  .......++.++|..++..+.+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~   80 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL   80 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence            4667899999999999998876 899999998 9999999999997433211  00112457889998888999999999


Q ss_pred             HHHHHHHHhCCCc---EEEEEE-CCEEEEEEehHHHHH
Q 041090          137 IEALQKMVQGKFR---HLPVVE-NGEVIAILDITKCLY  170 (294)
Q Consensus       137 ~~~~~~~~~~~~~---~~~V~~-~~~~vGivt~~dll~  170 (294)
                      .++++.|.+.+..   ..+|++ +|+++|+++..++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            9999999877643   335776 899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.36  E-value=9.4e-12  Score=115.28  Aligned_cols=117  Identities=13%  Similarity=0.202  Sum_probs=99.1

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGV  193 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~  193 (294)
                      ..++.+..+++++++++++.+++++|.+.++..+||+++    ++++|+++..|+...  .                   
T Consensus        97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~--~-------------------  155 (495)
T PTZ00314         97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV--K-------------------  155 (495)
T ss_pred             ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc--c-------------------
Confidence            445567788899999999999999999999999999984    799999999998521  0                   


Q ss_pred             HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                                           ....++.++|.+..+++++.+++++.+++++|.++++..+||+| +++++|+||++||+
T Consensus       156 ---------------------~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl  214 (495)
T PTZ00314        156 ---------------------DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLK  214 (495)
T ss_pred             ---------------------cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhh
Confidence                                 11356889995434789999999999999999999999999999 79999999999999


Q ss_pred             HHHH
Q 041090          273 MRVV  276 (294)
Q Consensus       273 ~~~~  276 (294)
                      +...
T Consensus       215 ~~~~  218 (495)
T PTZ00314        215 KNRG  218 (495)
T ss_pred             hccc
Confidence            5543

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.36  E-value=1.4e-11  Score=114.22  Aligned_cols=114  Identities=11%  Similarity=0.141  Sum_probs=98.0

Q ss_pred             cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhC
Q 041090          123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG  198 (294)
Q Consensus       123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  198 (294)
                      |.++++++++++++.++++.|.++++..+||+++    ++++|+||..|+....                          
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--------------------------  159 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--------------------------  159 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--------------------------
Confidence            5688999999999999999999999999999984    7999999999985310                          


Q ss_pred             CCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHH
Q 041090          199 SNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVA  277 (294)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~  277 (294)
                                      ....++.++|.+..+++++.+++++.+|+++|.++++..+||+| +++++|+||++||++....
T Consensus       160 ----------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        160 ----------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             ----------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                            12356889997622388999999999999999999999999998 8999999999999966655


Q ss_pred             c
Q 041090          278 Q  278 (294)
Q Consensus       278 ~  278 (294)
                      .
T Consensus       224 p  224 (505)
T PLN02274        224 P  224 (505)
T ss_pred             c
Confidence            3

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.35  E-value=7.5e-12  Score=107.98  Aligned_cols=111  Identities=14%  Similarity=0.177  Sum_probs=95.0

Q ss_pred             cccccccccC-CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          117 TVVSKIMTRN-PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       117 ~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      .+++++|.++ +.++.+++++.++++.|.+.+++.++|+| +|+++|+++..|+.+....                    
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~--------------------  214 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG--------------------  214 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence            5788999888 88899999999999999988899999999 8999999999999753211                    


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT  267 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt  267 (294)
                                        ......++.++|.+  ++.++.+++++.+|+++|.+.+...+||+| +|+++|+|+
T Consensus       215 ------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       215 ------------------GGSLKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ------------------CCcccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                              00123568899976  899999999999999999999999999998 689999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=3e-11  Score=94.09  Aligned_cols=139  Identities=21%  Similarity=0.267  Sum_probs=94.7

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHH-HHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRME-KAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      +++++++++++.++++.|.+.++..+||+++++++|+++..++++.+..... ................     ..+...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~   76 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPL-----REFINW   76 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccc-----hheeeh
Confidence            5678899999999999999889999999988899999999999765432110 0000000000000000     000000


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                      ........+ ....++.++|..  .+.++.+++++.+++..|.+.+...+||+++|+++|+|+..|++
T Consensus        77 ~~~~~~~~~-~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~  141 (143)
T cd04634          77 EETKRALTD-AGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII  141 (143)
T ss_pred             HHHHHHHHH-HhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence            001111111 123467888866  89999999999999999999999999999889999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2.5e-11  Score=89.21  Aligned_cols=102  Identities=29%  Similarity=0.403  Sum_probs=86.4

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++..+.++.+++..|.+.++..++|++ +++++|+++..+++...                                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~--------------------------------   49 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP--------------------------------   49 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence            456778888999999999888888999998 78999999999986310                                


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                                 ...++.++|..  ++.++.+++++.++++.|.+.+.+.+||+++|+++|+||..|++
T Consensus        50 -----------~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~  104 (106)
T cd04638          50 -----------EEEQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV  104 (106)
T ss_pred             -----------ccchHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence                       00235666755  78999999999999999999999999999988999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.34  E-value=2.4e-11  Score=89.47  Aligned_cols=96  Identities=17%  Similarity=0.261  Sum_probs=83.5

Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCC
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFS  202 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  202 (294)
                      ...+.+++++.++.+.+.+.+...+||+++    |+++|+++..++.....                             
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~-----------------------------   54 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK-----------------------------   54 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH-----------------------------
Confidence            456789999999999998888888999984    88999999999864311                             


Q ss_pred             ChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          203 APYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       203 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                                         .+|..  ++.++++++++.++++.|.+++.+.+||+++|+++|+||++|++
T Consensus        55 -------------------~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~  103 (105)
T cd04591          55 -------------------NYIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL  103 (105)
T ss_pred             -------------------HhccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence                               05544  78899999999999999999999999999999999999999997

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.34  E-value=4.7e-11  Score=106.96  Aligned_cols=196  Identities=20%  Similarity=0.198  Sum_probs=145.4

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHcCCC-C--------------ccccc----
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIAEGLR-P--------------DQTVV----  119 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~~~~~-~--------------~~~~v----  119 (294)
                      +..+++...++.+|+..+..++++..|+.+. ..++.|+++..|+...+...... .              ....+    
T Consensus        77 ~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (381)
T KOG1764|consen   77 KLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLL  156 (381)
T ss_pred             eeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhh
Confidence            7889999999999999999999999999986 46889999999987555432211 0              00011    


Q ss_pred             ccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhh
Q 041090          120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQW  197 (294)
Q Consensus       120 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (294)
                      +....++++.+.+..++.++...+.+++++++||.|  .+++..++|...+++++.......                  
T Consensus       157 ~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~------------------  218 (381)
T KOG1764|consen  157 KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL------------------  218 (381)
T ss_pred             ccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccc------------------
Confidence            111122337788888999999999999999999998  689999999999998766532211                  


Q ss_pred             CCCCCChhhhHHHHHHhhcccchhhhhhcCC-ceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090          198 GSNFSAPYAFIETLRERMFKPSLSTIITENA-KVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV  275 (294)
Q Consensus       198 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~  275 (294)
                          .         ...+...++.++-.... ++..+..++++.+|+++|.+++++++||++ .|+.+|++++.|+....
T Consensus       219 ----~---------~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~  285 (381)
T KOG1764|consen  219 ----P---------LPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLA  285 (381)
T ss_pred             ----c---------cHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhh
Confidence                1         01122233444332222 588999999999999999999999999999 77779999999999655


Q ss_pred             HHccCCCCcce
Q 041090          276 VAQNLSPELTL  286 (294)
Q Consensus       276 ~~~~~~~~~~~  286 (294)
                      .....+....+
T Consensus       286 ~~~~~~~~~~~  296 (381)
T KOG1764|consen  286 REGTYNNLDLS  296 (381)
T ss_pred             hcCccCccchh
Confidence            55555555444

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.32  E-value=2.6e-11  Score=112.43  Aligned_cols=120  Identities=18%  Similarity=0.279  Sum_probs=97.2

Q ss_pred             CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      +...+++++|.+++.++.+++++.++++.|.+.++..+||+| +++++|+|+..|+++.....                 
T Consensus       332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------  394 (454)
T TIGR01137       332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAG-----------------  394 (454)
T ss_pred             hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhcc-----------------
Confidence            345678999988999999999999999999988899999999 78999999999997643220                 


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                                          ......++.++|..  ++.++++++++.+++++|.+.+  ..+|+++|+++|+||+.|++
T Consensus       395 --------------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll  450 (454)
T TIGR01137       395 --------------------KANPDDAVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLL  450 (454)
T ss_pred             --------------------CCCcCCCHHHhcCC--CCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHH
Confidence                                00112458888866  8889999999999999998753  34455589999999999999


Q ss_pred             HH
Q 041090          273 MR  274 (294)
Q Consensus       273 ~~  274 (294)
                      +.
T Consensus       451 ~~  452 (454)
T TIGR01137       451 SF  452 (454)
T ss_pred             Hh
Confidence            54

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=5.3e-11  Score=87.64  Aligned_cols=108  Identities=26%  Similarity=0.351  Sum_probs=88.8

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.+++.++++.++.+.|.+.+...+||++ +++++|+++..+++........                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~---------------------------   54 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGL---------------------------   54 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccC---------------------------
Confidence            456788999999999999988888999999 6899999999999765432100                           


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                                .....+.++|..  ++..+.+++++.+++..|.+.+.+.+||++ +|+++|+++..|++
T Consensus        55 ----------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~  111 (113)
T cd02205          55 ----------DPLVTVGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL  111 (113)
T ss_pred             ----------CccccHHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence                      000114566755  889999999999999999999999999999 69999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.31  E-value=5.7e-12  Score=101.92  Aligned_cols=131  Identities=11%  Similarity=0.214  Sum_probs=112.6

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      +..+++|+|+|.+  ..++++.+.++.+.+..+.+..++.+||+.+ ...+.|++..+||++++....   ....+.+++
T Consensus        63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~---~~F~i~~lL  139 (293)
T COG4535          63 DIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA---EPFDIKELL  139 (293)
T ss_pred             HHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc---ccccHHHhc
Confidence            3567899999999  7899999999999999999999999999976 467999999999997653322   235677776


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHh
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAE  181 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~  181 (294)
                       ++.+.++++..+...++-|+.++.|...|+| .|.+-|.||.+|+++.+...++..+.
T Consensus       140 -RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~D  197 (293)
T COG4535         140 -RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYD  197 (293)
T ss_pred             -ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccc
Confidence             5778899999999999999999999999999 88899999999999999887777653

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.31  E-value=2.9e-11  Score=93.01  Aligned_cols=96  Identities=25%  Similarity=0.293  Sum_probs=78.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcc----------ccccccc------
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ----------TVVSKIM------  123 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~----------~~v~~~~------  123 (294)
                      ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++++.........          ..+.++|      
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~   81 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY   81 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence            567899999999999999999999999999999999999999998766433221100          1123344      


Q ss_pred             ---ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE
Q 041090          124 ---TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE  155 (294)
Q Consensus       124 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~  155 (294)
                         ..+++++.+++++.++++.|.+++++.+||++
T Consensus        82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd  116 (133)
T cd04592          82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK  116 (133)
T ss_pred             cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence               45688999999999999999999999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.29  E-value=1.1e-10  Score=87.64  Aligned_cols=112  Identities=21%  Similarity=0.256  Sum_probs=87.5

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCC-CcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGK-FRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++++++++.++++.|...+ ++.++|+++|+++|+++..+++........                           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~~---------------------------   54 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPYG---------------------------   54 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchhh---------------------------
Confidence            4556889999999999998776 789999988899999999998754321100                           


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCc---eeEEee-CCeEeEeeehhHHHH
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSN---SALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd-~g~~vGivt~~Dil~  273 (294)
                             .......++.++|..  .+.++.+++++.+++..|.+++..   ..+|++ +|+++|+||..|+++
T Consensus        55 -------~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          55 -------RALYGKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             -------HHHHcCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence                   011123458888866  899999999999999999988753   346776 899999999999973

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.27  E-value=3.9e-11  Score=103.48  Aligned_cols=129  Identities=12%  Similarity=0.177  Sum_probs=110.1

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      |..+++|+|+|.+  ++..++.+++.++.++.+.+..+..+|++.++ +.++|+++.+|+++.+.++.. .....+..+.
T Consensus       196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-~~k~d~~~~a  274 (423)
T COG4536         196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-FTKEDILRAA  274 (423)
T ss_pred             ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-ccHhHHHHHh
Confidence            7789999999999  88999999999999999999999999999763 569999999999876655443 3344444444


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRME  177 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~  177 (294)
                       .+|.++++++++.+-+..|.+++-|...|+| .|.+.|+||.+|+++.....+.
T Consensus       275 -~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdft  328 (423)
T COG4536         275 -DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFT  328 (423)
T ss_pred             -cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccc
Confidence             4677899999999999999998888888999 9999999999999998887655

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.24  E-value=4e-11  Score=77.94  Aligned_cols=55  Identities=16%  Similarity=0.311  Sum_probs=52.4

Q ss_pred             hhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 041090           53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRV  107 (294)
Q Consensus        53 v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~  107 (294)
                      |+++|.++++++++++++.+|++.|.+++++.+||+|++|+++|++|.+||++++
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            6799999999999999999999999999999999999999999999999998655

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.23  E-value=1.4e-10  Score=105.30  Aligned_cols=122  Identities=20%  Similarity=0.308  Sum_probs=109.6

Q ss_pred             CCcccchhccccCCceeecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccc
Q 041090           47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK  121 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~-----~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~  121 (294)
                      .|.+-+++.+|+.+.++++++.|+.+|+..+++.     .+..+.|+|.++++.|+++.++++.       ...+.++++
T Consensus       128 ~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~-------a~~~~~i~~  200 (451)
T COG2239         128 SYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLT-------AEPDELLKD  200 (451)
T ss_pred             CCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhc-------CCcHhHHHH
Confidence            4677788999999999999999999999999953     4678999999999999999999972       334789999


Q ss_pred             ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090          122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR  175 (294)
Q Consensus       122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~  175 (294)
                      +|.+.++.+.+++..+++.+.|.+++.-.+||+| +++++|++|..|++.-....
T Consensus       201 im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE  255 (451)
T COG2239         201 LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             HhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 89999999999998766553

>PRK11573 hypothetical protein; Provisional

Probab=99.22  E-value=1.5e-10  Score=105.30  Aligned_cols=134  Identities=15%  Similarity=0.236  Sum_probs=106.6

Q ss_pred             HcCCCCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhch
Q 041090          109 AEGLRPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGS  184 (294)
Q Consensus       109 ~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~  184 (294)
                      .+-.+..+.+++++|.+  ++++++.++++.++++.+.+++++++||++  .+.++|++..+|++......         
T Consensus       179 ~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~---------  249 (413)
T PRK11573        179 LSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK---------  249 (413)
T ss_pred             HHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc---------
Confidence            34456778899999975  678899999999999999999999999998  37899999999998532210         


Q ss_pred             hHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEe
Q 041090          185 AIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQ  263 (294)
Q Consensus       185 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~v  263 (294)
                                    ..              .....+.+++   +++..|+++.++.++++.|.+++.+-..|+| .|..+
T Consensus       250 --------------~~--------------~~~~~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~  298 (413)
T PRK11573        250 --------------KE--------------FTKENMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQ  298 (413)
T ss_pred             --------------Cc--------------CCHHHHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeE
Confidence                          00              0001122333   2688999999999999999999999999999 69999


Q ss_pred             EeeehhHHHHHHHHccCCC
Q 041090          264 GILTSKDVLMRVVAQNLSP  282 (294)
Q Consensus       264 Givt~~Dil~~~~~~~~~~  282 (294)
                      |+||..||+..++.+-.+.
T Consensus       299 GiVTleDilEeivGei~de  317 (413)
T PRK11573        299 GLVTVEDILEEIVGDFTTS  317 (413)
T ss_pred             EEeeHHHHHHHHhCCCCcc
Confidence            9999999999999765543

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.20  E-value=3.3e-10  Score=103.89  Aligned_cols=145  Identities=17%  Similarity=0.314  Sum_probs=116.7

Q ss_pred             EEEEeHHHHHHHHHHcCCCCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHH
Q 041090           95 SGIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLY  170 (294)
Q Consensus        95 ~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~  170 (294)
                      .|++...+-  .++.+-....+..++++|.+  +..+++.+.++.++.+.+.+.+++++||++  .+.++|+++.+|++.
T Consensus       186 ~g~~~~~E~--~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~  263 (429)
T COG1253         186 EGVLEEEER--EMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR  263 (429)
T ss_pred             cCCcCHHHH--HHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence            577777763  55666667888999999975  567888999999999999999999999999  578999999999998


Q ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhC
Q 041090          171 DAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFR  250 (294)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~  250 (294)
                      +......                                       .......+ .  +++.++++.++.++++.|.+.+
T Consensus       264 ~~~~~~~---------------------------------------~~~~~~~~-~--~~~~Vpet~~~~~lL~~~r~~~  301 (429)
T COG1253         264 ALLDGQS---------------------------------------DLDLRVLV-R--PPLFVPETLSLSDLLEEFREER  301 (429)
T ss_pred             HHhcCcc---------------------------------------ccchhhcc-c--CCeEecCCCcHHHHHHHHHHhC
Confidence            6544100                                       00111111 1  6899999999999999999999


Q ss_pred             CceeEEee-CCeEeEeeehhHHHHHHHHccCCCC
Q 041090          251 SNSALIVT-GSKIQGILTSKDVLMRVVAQNLSPE  283 (294)
Q Consensus       251 ~~~lpVvd-~g~~vGivt~~Dil~~~~~~~~~~~  283 (294)
                      .|-..|+| .|.+.|+||..||+..++.+-.+..
T Consensus       302 ~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~  335 (429)
T COG1253         302 THMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEH  335 (429)
T ss_pred             CeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcc
Confidence            99999999 6999999999999999888655443

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.19  E-value=1.4e-10  Score=105.24  Aligned_cols=127  Identities=19%  Similarity=0.315  Sum_probs=108.6

Q ss_pred             HHHcCCCCcccccccccccCCeEEcCCCcHHHHHHHHHh-----CCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHH
Q 041090          107 VIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQ-----GKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAA  180 (294)
Q Consensus       107 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~-----~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~  180 (294)
                      .+....++.+..++.+|....+.++++.|+.+++..+++     ..+..++|+| +++++|+++.++++....       
T Consensus       122 ~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~-------  194 (451)
T COG2239         122 RVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP-------  194 (451)
T ss_pred             HHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc-------
Confidence            334456677889999999999999999999999999884     3467889999 889999999999975322       


Q ss_pred             hhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-C
Q 041090          181 EQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-G  259 (294)
Q Consensus       181 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~  259 (294)
                                                          ...+.++|.+  .+.++.+++..+++++++.++++-.+|||| +
T Consensus       195 ------------------------------------~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~  236 (451)
T COG2239         195 ------------------------------------DELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED  236 (451)
T ss_pred             ------------------------------------HhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC
Confidence                                                1458899977  799999999999999999999999999999 8


Q ss_pred             CeEeEeeehhHHHHHHHHcc
Q 041090          260 SKIQGILTSKDVLMRVVAQN  279 (294)
Q Consensus       260 g~~vGivt~~Dil~~~~~~~  279 (294)
                      ++++|+||..|++ ..+.+.
T Consensus       237 ~~LiG~itiDDii-dvi~eE  255 (451)
T COG2239         237 NRLIGIITIDDII-DVIEEE  255 (451)
T ss_pred             CceeeeeeHHHHH-HHHHHH
Confidence            8999999999999 555443

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.08  E-value=1.9e-09  Score=82.92  Aligned_cols=114  Identities=16%  Similarity=0.043  Sum_probs=75.9

Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCCh
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAP  204 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  204 (294)
                      ++.++.+++++.++++.|.+.+++.+||+| +|+++|+++..|++++..........    ...      .-++..    
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~----~~~------~~~~~~----   67 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQ----PED------ETKQTN----   67 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccc----cch------hhcccc----
Confidence            467889999999999999988999999999 79999999999998765331000000    000      000000    


Q ss_pred             hhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee
Q 041090          205 YAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT  258 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  258 (294)
                         ...+.+.+....+.+.|..  +++++.+++++.+|+++|.+++++.+||++
T Consensus        68 ---~~~v~~i~~~~~~~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd  116 (133)
T cd04592          68 ---TCLVSSVCTKGISYGGQEC--GLWTCTPDTDLTTAKKLMEAKGVKQLPVVK  116 (133)
T ss_pred             ---cccHHHHhhhhhhhcccCC--CCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence               0000000000011222334  789999999999999999999999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.04  E-value=9.9e-10  Score=71.25  Aligned_cols=54  Identities=28%  Similarity=0.396  Sum_probs=49.9

Q ss_pred             hhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090          220 LSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV  275 (294)
Q Consensus       220 v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~  275 (294)
                      +.++|.+  ++.++++++++.++++.|.+++++++||+| +|+++|+||.+||++.+
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            4678877  999999999999999999999999999998 89999999999999654

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.96  E-value=7.1e-08  Score=87.37  Aligned_cols=121  Identities=13%  Similarity=0.129  Sum_probs=93.9

Q ss_pred             cccccccccCCe---EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          117 TVVSKIMTRNPI---FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       117 ~~v~~~~~~~~~---~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      .++.++|...+.   ...++....+++..|...+.+.++|+| +++++|+++..++......                  
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------------------  335 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQ------------------  335 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhc------------------
Confidence            345566543221   233566789999999999999999999 8999999999998543211                  


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                                              ...+.+.+..  ...++.+++++.+++..|.+.... +||+| +|+++|+||+.++
T Consensus       336 ------------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~  388 (400)
T PRK10070        336 ------------------------QQGLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGML  388 (400)
T ss_pred             ------------------------CCchhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHH
Confidence                                    1235555644  688999999999999999987665 99999 8999999999999


Q ss_pred             HHHHHHccCCC
Q 041090          272 LMRVVAQNLSP  282 (294)
Q Consensus       272 l~~~~~~~~~~  282 (294)
                      ++.+...+.+.
T Consensus       389 ~~~~~~~~~~~  399 (400)
T PRK10070        389 LRALDREGVNN  399 (400)
T ss_pred             HHHHHhcCCCC
Confidence            98888777653

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.90  E-value=3.2e-09  Score=97.10  Aligned_cols=164  Identities=16%  Similarity=0.157  Sum_probs=119.5

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--C----CEEEEEEehHHHHHHHHHHHHHHHhh-chhHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE--N----GEVIAILDITKCLYDAISRMEKAAEQ-GSAIAA  188 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~----~~~vGivt~~dll~~~~~~~~~~~~~-~~~~~~  188 (294)
                      ...++++|.++.+++..-+.+..+.+.+++..++.+||+|  .    +++.|+|-++.++..+.++....... ......
T Consensus       581 ~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~  660 (762)
T KOG0474|consen  581 NLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPV  660 (762)
T ss_pred             hhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcch
Confidence            4578999999999999999999999999999999999998  2    36889998888877665554432210 000110


Q ss_pred             HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090          189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT  267 (294)
Q Consensus       189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt  267 (294)
                      ......+..........+..-+..+...-.++..+|++  .++++.+++++..+..++++-+++++.|++ .+.++|++|
T Consensus       661 ~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilT  738 (762)
T KOG0474|consen  661 RRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILT  738 (762)
T ss_pred             hhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEe
Confidence            11111122223444444444445555566789999977  999999999999999999999999999999 778899999


Q ss_pred             hhHHHHHHHHccCCC
Q 041090          268 SKDVLMRVVAQNLSP  282 (294)
Q Consensus       268 ~~Dil~~~~~~~~~~  282 (294)
                      ++|++ +.-..++.|
T Consensus       739 R~D~~-~~~~l~~~~  752 (762)
T KOG0474|consen  739 RKDLA-RYRILGLEP  752 (762)
T ss_pred             hhhhh-hHHHhcccc
Confidence            99998 444555543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.87  E-value=2.3e-07  Score=83.04  Aligned_cols=148  Identities=16%  Similarity=0.225  Sum_probs=104.0

Q ss_pred             CEEEEEcCCCcEEEEEeHHHHHHH--------HHHcCCCCccccccc---ccccCCeEEcCCCcHHHHHHHHHhCCCcEE
Q 041090           83 DAVLLTDANALLSGIVTDKDITTR--------VIAEGLRPDQTVVSK---IMTRNPIFVTSDSLAIEALQKMVQGKFRHL  151 (294)
Q Consensus        83 ~~lpV~d~~~~~~Givt~~di~~~--------~~~~~~~~~~~~v~~---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~  151 (294)
                      +.+.+++ +|+++..-+..+++..        ++.............   .+........++.+..++++.|...+...+
T Consensus       198 drI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (363)
T TIGR01186       198 DRIVIMK-AGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDSL  276 (363)
T ss_pred             CEEEEEe-CCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCceE
Confidence            4555554 6888888888877532        111100000111222   222233345567788999999998888899


Q ss_pred             EEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCce
Q 041090          152 PVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKV  230 (294)
Q Consensus       152 ~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~  230 (294)
                      .|++ ++++.|+++..++..+...                                          ...+.+.+..  ..
T Consensus       277 ~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~--~~  312 (363)
T TIGR01186       277 YVVDRQNKLVGVVDVESIKQARKK------------------------------------------AQGLQDVLID--DI  312 (363)
T ss_pred             EEEcCCCCEEEEEeHHHHHHHhhc------------------------------------------CCchhhhhcc--CC
Confidence            9999 8999999998887543211                                          1235566655  78


Q ss_pred             eEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090          231 AIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV  276 (294)
Q Consensus       231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~  276 (294)
                      .++.+++++.+++..|.+.+.. +||+| +|+++|+||+.++++.+.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       313 YTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             ceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            8999999999999999999987 99999 899999999999995554

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.83  E-value=8.2e-09  Score=90.08  Aligned_cols=106  Identities=26%  Similarity=0.384  Sum_probs=94.5

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcH
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLA  136 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l  136 (294)
                      +++++.|+.++.++++....+++..+||.++   .++++|+||.+|+ ..+     ......+.++|...+++.+.+.++
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~-----~~~~~~~~~vmt~~~~~~~~gi~l  190 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL-----EDNSLLVSDVMTKNPVTGAQGITL  190 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh-----hcccchhhhhcccccccccccccH
Confidence            6788999999999999999999999999975   4799999999999 344     223568899999988899999999


Q ss_pred             HHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090          137 IEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD  171 (294)
Q Consensus       137 ~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~  171 (294)
                      .++-+++.+.+...+||+| +|+++.++++.||.+.
T Consensus       191 ~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  191 KEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             HHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence            9999999999999999999 9999999999999764

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.78  E-value=4.9e-08  Score=84.65  Aligned_cols=138  Identities=20%  Similarity=0.254  Sum_probs=108.4

Q ss_pred             CCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHH
Q 041090          113 RPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAA  188 (294)
Q Consensus       113 ~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~  188 (294)
                      +.+..+|.|+|.+  ....++.+++.+++++.+....+.++|+..  -+.++|++..+|+++.+.+...           
T Consensus       196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-----------  264 (423)
T COG4536         196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-----------  264 (423)
T ss_pred             ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-----------
Confidence            4556789999964  566789999999999999999999999987  2569999999999987655211           


Q ss_pred             HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090          189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT  267 (294)
Q Consensus       189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt  267 (294)
                                                .....+..+   ..+|+.+++.+++.+-+..|..++-+-..||| -|.+.|+||
T Consensus       265 --------------------------~~k~d~~~~---a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVT  315 (423)
T COG4536         265 --------------------------FTKEDILRA---ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVT  315 (423)
T ss_pred             --------------------------ccHhHHHHH---hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeee
Confidence                                      000112222   23799999999999999999999999999999 699999999


Q ss_pred             hhHHHHHHHHccCCCCcceeeec
Q 041090          268 SKDVLMRVVAQNLSPELTLVERF  290 (294)
Q Consensus       268 ~~Dil~~~~~~~~~~~~~~v~~~  290 (294)
                      ..||+..++.+-.+......+++
T Consensus       316 LEDIlEEIVGdftde~d~~~~ev  338 (423)
T COG4536         316 LEDILEEIVGDFTDEHDTLAKEV  338 (423)
T ss_pred             HHHHHHHHhccccccCcccchhh
Confidence            99999999988775544444443

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.71  E-value=3.7e-07  Score=81.72  Aligned_cols=110  Identities=17%  Similarity=0.266  Sum_probs=91.3

Q ss_pred             cCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHH
Q 041090           58 LSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAI  137 (294)
Q Consensus        58 ~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~  137 (294)
                      ........++.+..+++..|...+...+.|+|+++++.|.++.+++..+. ..     ...+.+.+.....++.+++++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~  322 (363)
T TIGR01186       249 NTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQAR-KK-----AQGLQDVLIDDIYTVDAGTLLR  322 (363)
T ss_pred             cccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHh-hc-----CCchhhhhccCCceECCCCcHH
Confidence            33444566778899999999999999999999999999999999986433 22     2246666777778899999999


Q ss_pred             HHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          138 EALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       138 ~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      +++..|.+.+.. +||+| +|+++|+|+..+++..+..
T Consensus       323 ~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       323 ETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             HHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            999999998888 99999 8999999999999887654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.69  E-value=3e-08  Score=90.90  Aligned_cols=125  Identities=15%  Similarity=0.106  Sum_probs=102.9

Q ss_pred             CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-----CcEEEEEeHHHHHHHHHHcC----------
Q 041090           47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN-----ALLSGIVTDKDITTRVIAEG----------  111 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-----~~~~Givt~~di~~~~~~~~----------  111 (294)
                      ..++++++|+|.++++++..-+.+...++++.++.++.+||+|+.     +++.|++-.+.++ .++.+.          
T Consensus       578 ~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~~~  656 (762)
T KOG0474|consen  578 YMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRSTF  656 (762)
T ss_pred             HhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCcccc
Confidence            458899999999999999999999999999999999999999972     5788998887765 232211          


Q ss_pred             -----------------CCC-----------cccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEE
Q 041090          112 -----------------LRP-----------DQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAI  162 (294)
Q Consensus       112 -----------------~~~-----------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGi  162 (294)
                                       ...           --..+..+|.+.|.++++++++..+..+|++-+.+++.|++ .+.++|+
T Consensus       657 ~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gi  736 (762)
T KOG0474|consen  657 DLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGI  736 (762)
T ss_pred             CcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEE
Confidence                             000           01245567778899999999999999999999999999999 7788999


Q ss_pred             EehHHHHHHH
Q 041090          163 LDITKCLYDA  172 (294)
Q Consensus       163 vt~~dll~~~  172 (294)
                      +|+.|+..+-
T Consensus       737 lTR~D~~~~~  746 (762)
T KOG0474|consen  737 LTRKDLARYR  746 (762)
T ss_pred             EehhhhhhHH
Confidence            9999998653

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=4.4e-07  Score=82.26  Aligned_cols=117  Identities=15%  Similarity=0.174  Sum_probs=94.3

Q ss_pred             cchhccccCCc---eeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090           51 RTVKKLRLSKA---LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP  127 (294)
Q Consensus        51 ~~v~dl~~~~~---~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  127 (294)
                      .++.++|.+..   +...++.+..+|+..|...+.+.++|+|+++++.|+++.+++.+.. .+     ...+.+.+....
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~-----~~~~~~~~~~~~  347 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTAL-TQ-----QQGLDAALIDAP  347 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhh-hc-----CCchhhhhccCC
Confidence            56677775422   2344677899999999999999999999999999999999996432 22     224666666777


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      .++.+++++.+++..+...... +||+| +|+++|+|+..+++..+..
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        348 LAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             ceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            8899999999999999987666 89999 8999999999999987644

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.53  E-value=2.4e-07  Score=81.12  Aligned_cols=105  Identities=14%  Similarity=0.249  Sum_probs=91.2

Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE----CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCC
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE----NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSN  200 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  200 (294)
                      .+|+++.++.++.++++....+++..+||.+    +++++|+||.+|+...                             
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-----------------------------  166 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-----------------------------  166 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-----------------------------
Confidence            4677889999999999999999999999986    4689999999998432                             


Q ss_pred             CCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          201 FSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                   ......+.++|..  ++++.....++.++-+++.+..-..+|||| +|+++.+|++.||++
T Consensus       167 -------------~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k  225 (503)
T KOG2550|consen  167 -------------EDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMK  225 (503)
T ss_pred             -------------hcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhh
Confidence                         1123568899977  779999999999999999999999999999 899999999999983

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.51  E-value=7.7e-08  Score=78.28  Aligned_cols=173  Identities=16%  Similarity=0.190  Sum_probs=124.8

Q ss_pred             CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc-
Q 041090           47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR-  125 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~-  125 (294)
                      .|-..-.+++....      -.+-++.+.++++...+.+            +....+  .+++......+..++++|.+ 
T Consensus        17 sffe~L~~~~f~gE------pknr~eLl~liRdse~n~L------------iD~dt~--~mlEGvm~iadl~vrDiMIPR   76 (293)
T COG4535          17 SFFERLLSQLFHGE------PKNREELLELIRDSEQNEL------------IDADTL--DMLEGVMDIADLRVRDIMIPR   76 (293)
T ss_pred             cHHHHHHHHHhcCC------CcCHHHHHHHHHHhhhccc------------cChhHH--HHHHHHHHHHHhhHhhhcccH
Confidence            55555555553332      2457788888877554333            222221  22222233446678899865 


Q ss_pred             -CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCC
Q 041090          126 -NPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFS  202 (294)
Q Consensus       126 -~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  202 (294)
                       ..+++..+.++.+++..+.+...+++||+.  .+.+.|++-.+||+.+....                           
T Consensus        77 SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~---------------------------  129 (293)
T COG4535          77 SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD---------------------------  129 (293)
T ss_pred             HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC---------------------------
Confidence             567889999999999999999999999987  57899999999999864321                           


Q ss_pred             ChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHHccCC
Q 041090          203 APYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVAQNLS  281 (294)
Q Consensus       203 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~~~~~  281 (294)
                                  .....+.++..   +.+.|+++..+...++-+...+.+...|+| -|-+-|+||..||+..+++.--+
T Consensus       130 ------------~~~F~i~~lLR---Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIED  194 (293)
T COG4535         130 ------------AEPFDIKELLR---PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIED  194 (293)
T ss_pred             ------------cccccHHHhcc---cceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhccccc
Confidence                        01123455542   588899999999999999999999999999 58899999999999877765443

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.48  E-value=3.9e-07  Score=67.86  Aligned_cols=54  Identities=19%  Similarity=0.252  Sum_probs=51.5

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDIT  104 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~  104 (294)
                      .+|+++|.+++..+.+++++.+|++.|.+++++.+||+|++|+++|+++.+||.
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence            679999999999999999999999999999999999999999999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.48  E-value=1.9e-07  Score=88.64  Aligned_cols=198  Identities=19%  Similarity=0.226  Sum_probs=125.9

Q ss_pred             hhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC------------CcEEEEEeHHHHHHHHHHcCCCCcccccc
Q 041090           53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN------------ALLSGIVTDKDITTRVIAEGLRPDQTVVS  120 (294)
Q Consensus        53 v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~------------~~~~Givt~~di~~~~~~~~~~~~~~~v~  120 (294)
                      +.+.|.+.-+.+..+.+  +....+.+.+++.++|....            ..+.++.|..|.......  ... ..+++
T Consensus       175 ~~~~~~~~~lvi~gdr~--d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~--l~~-~~~V~  249 (546)
T PRK14869        175 LLERIEEGDIVIVGDRE--DIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARL--INQ-SIPVS  249 (546)
T ss_pred             HHHhccCCCEEEEcCcH--HHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHH--hhc-CCCHH
Confidence            34445554333433322  33446778889999887643            258899999997644322  122 56899


Q ss_pred             cccc-cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhC
Q 041090          121 KIMT-RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG  198 (294)
Q Consensus       121 ~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  198 (294)
                      ++|. ++++++++++++.++.+.|.+++++.+||+| +|+++|+++..|++.....+..= ..+. ...........   
T Consensus       250 ~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iL-VD~~-e~~q~~~~~~~---  324 (546)
T PRK14869        250 YIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVIL-VDHN-EKSQAVEGIEE---  324 (546)
T ss_pred             HhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEE-EcCc-cccccccchhh---
Confidence            9999 8899999999999999999999999999999 89999999999998743221000 0000 00000000000   


Q ss_pred             CCCCChhhhHHHHHHhhcccchhhhhhcCCceeEe---CCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          199 SNFSAPYAFIETLRERMFKPSLSTIITENAKVAIV---SPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v---~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                                ..+.+..-..++.+++..  .++.+   +...+.+.+.++|.+.++...|++....+.||+|-++.+
T Consensus       325 ----------~~i~~iiDHH~~~~~~~~--~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~~ll~gIlsDT~~f  389 (546)
T PRK14869        325 ----------AEILEIIDHHRLGDIQTS--NPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAGLLLAAILSDTLLF  389 (546)
T ss_pred             ----------ceEEEEecCCccCCCCCC--CCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCc
Confidence                      000111122345566654  44433   446677788899999998888877666677888877766

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.23  E-value=9.7e-06  Score=69.55  Aligned_cols=158  Identities=15%  Similarity=0.191  Sum_probs=108.0

Q ss_pred             cCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH--------HHHHcCCCCcccccccccccC--C
Q 041090           58 LSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITT--------RVIAEGLRPDQTVVSKIMTRN--P  127 (294)
Q Consensus        58 ~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~--------~~~~~~~~~~~~~v~~~~~~~--~  127 (294)
                      .+.+++|+.|  ++||+++     =+.+.+. ++|+++.+=|+.+|+.        .+...-......+.+++|...  .
T Consensus       215 ~KTIvFitHD--LdEAlri-----G~rIaim-kdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~  286 (386)
T COG4175         215 KKTIVFITHD--LDEALRI-----GDRIAIM-KDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLL  286 (386)
T ss_pred             CCeEEEEecC--HHHHHhc-----cceEEEe-cCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcccccc
Confidence            4466677666  8899885     1344444 4899999999998863        222222233345677788631  1


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhh
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYA  206 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  206 (294)
                      ..-.+...-..++..+.....+.+.+++ +++.+|+++..++...                                   
T Consensus       287 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~-----------------------------------  331 (386)
T COG4175         287 IRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA-----------------------------------  331 (386)
T ss_pred             cccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc-----------------------------------
Confidence            1112223334567777776666666777 7789999998776431                                   


Q ss_pred             hHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHH
Q 041090          207 FIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVA  277 (294)
Q Consensus       207 ~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~  277 (294)
                                      .+..  .+.++.+++++.+.+..+.+.+. .++|+| +|+++|+|++..++..+..
T Consensus       332 ----------------~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 ----------------ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             ----------------cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence                            2222  68889999999999998887766 688888 8999999999999965543

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.22  E-value=2.3e-06  Score=63.68  Aligned_cols=53  Identities=26%  Similarity=0.406  Sum_probs=48.8

Q ss_pred             cchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          218 PSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       218 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                      .++.++|.+  ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+|+..||.
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhh
Confidence            458889976  899999999999999999999999999999 79999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.04  E-value=1.9e-05  Score=48.14  Aligned_cols=45  Identities=24%  Similarity=0.392  Sum_probs=41.4

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 041090           61 ALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITT  105 (294)
Q Consensus        61 ~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~  105 (294)
                      +.++.+++++.++++.|.+++...+||++++++++|+++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~   46 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIK   46 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHH
Confidence            567899999999999999999999999998899999999999964

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.01  E-value=8.2e-05  Score=68.96  Aligned_cols=111  Identities=16%  Similarity=0.243  Sum_probs=89.8

Q ss_pred             ceeecCC-CCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHHcC----------------------CCCc
Q 041090           61 ALTIPEG-TIVSDACRRMASRRVDAVLLTDA--NALLSGIVTDKDITTRVIAEG----------------------LRPD  115 (294)
Q Consensus        61 ~~~v~~~-~sv~~a~~~~~~~~~~~lpV~d~--~~~~~Givt~~di~~~~~~~~----------------------~~~~  115 (294)
                      ...++.+ +++++...+|.++.++.+||+-+  ..+++|++..+|+.-.+....                      ....
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~  637 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS  637 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence            5666665 89999999999999999998743  578999999999865554210                      1122


Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYD  171 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~  171 (294)
                      ...+++++...+.++...++.+.++.++++-+...+.|.++|++.|+||.+|+++.
T Consensus       638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLRH  693 (696)
T ss_pred             CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHHh
Confidence            34567788778889999999999999999999988888889999999999999864

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.01  E-value=0.00018  Score=64.98  Aligned_cols=47  Identities=11%  Similarity=0.284  Sum_probs=41.5

Q ss_pred             ceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHHH
Q 041090          229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVV  276 (294)
Q Consensus       229 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~~  276 (294)
                      ...++++++++.+++..+.+.+. .++|+|+|+++|+|++.+++..+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGG-AILLVENGRIVGVIGDDNIYHALL  380 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCC-CeEEeeCCeEEEEEeHHHHHHHHh
Confidence            67889999999999998887665 688999999999999999996654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.94  E-value=3.5e-05  Score=46.93  Aligned_cols=44  Identities=27%  Similarity=0.443  Sum_probs=40.3

Q ss_pred             eeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          230 VAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       230 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                      +.++.+++++.++++.|.+.+.+.+||++ +++++|+++..|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~   46 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIK   46 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHH
Confidence            56789999999999999999999999999 689999999999983

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.62  E-value=0.00027  Score=65.67  Aligned_cols=131  Identities=18%  Similarity=0.185  Sum_probs=89.2

Q ss_pred             CeEEcCC-CcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCC
Q 041090          127 PIFVTSD-SLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFS  202 (294)
Q Consensus       127 ~~~v~~~-~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  202 (294)
                      ...++.+ .++.+...+|.+..+..+||+-   .+.++|++.++++...+... .+.++...         ....+.+-+
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~a-r~~q~~~~---------~~~~~f~~~  627 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNA-RKIQSFIV---------TTSIYFNDP  627 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhh-ccccccce---------ecccccCCC
Confidence            4444444 7999999999988888788764   56799999999987654421 11110000         000000000


Q ss_pred             ChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090          203 APYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM  273 (294)
Q Consensus       203 ~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~  273 (294)
                      .+    ......-....++++|.-  .+.++...++.+-+++++.+-+++.+.|..+|++.|+||.+|+++
T Consensus       628 ~~----~~~~~~~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~  692 (696)
T KOG0475|consen  628 SP----SAVAGIPSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLR  692 (696)
T ss_pred             Cc----cccCCCCCCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHH
Confidence            00    000111123457788866  899999999999999999999999999998999999999999994

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.09  E-value=0.0034  Score=56.79  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=76.6

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP  127 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  127 (294)
                      .+-+++.++|.+.......+.+  .|++.   ++...+.|+|.     |+++..+.. .+... .  ....+.+ +....
T Consensus       271 ~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~-~~~~~-~--~~~~~~~-~~~~~  335 (382)
T TIGR03415       271 LNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKL-PVQAW-A--AEQEVES-LEAAP  335 (382)
T ss_pred             ccceeHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchH-hHhhc-c--cccchhh-hcccC
Confidence            4567889999543333343333  44443   78889999995     788877764 22221 0  1223555 45567


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAI  173 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~  173 (294)
                      .++++++++.+++..+.+.+.. ++|+++|+++|+|+..+++..+.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       336 TVINPDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHALL  380 (382)
T ss_pred             cccCCCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHHHh
Confidence            7899999999999988876654 67888899999999999987653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.74  E-value=0.0094  Score=56.88  Aligned_cols=58  Identities=14%  Similarity=0.210  Sum_probs=51.3

Q ss_pred             CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHH
Q 041090           47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA--NALLSGIVTDKDIT  104 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~--~~~~~Givt~~di~  104 (294)
                      ....+.|.++|.+++.+|..++|..|.-+.+..+.++.+|++|+  +--++|.|..+.+.
T Consensus       584 ~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~  643 (931)
T KOG0476|consen  584 SVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLT  643 (931)
T ss_pred             ceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHH
Confidence            45778999999999999999999999988888877999999997  34689999999885

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.70  E-value=0.015  Score=55.55  Aligned_cols=59  Identities=17%  Similarity=0.167  Sum_probs=50.2

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~  174 (294)
                      ...|+++|.+++..+..+.+..++.+.+.......+|+++   +.-++|.|.+..|+..+.+
T Consensus       587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence            4578999999999999999999999988876688999988   2458999999998876655

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.48  E-value=0.0062  Score=52.74  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=82.3

Q ss_pred             cccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090           49 GERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN  126 (294)
Q Consensus        49 ~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  126 (294)
                      +.++++++|.+  ..+.-.+...-..++..+.+.....+.+++.+++.+|+++..+....               .+...
T Consensus       272 ~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~---------------~~~~~  336 (386)
T COG4175         272 RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA---------------ALIDD  336 (386)
T ss_pred             heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc---------------ccccc
Confidence            55788999985  22222333445578888888887778888878889999999887521               33456


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                      +..+..++++.+.+....+.... ++|+| +++++|+++...++.++.
T Consensus       337 ~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         337 VLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             ccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHHh
Confidence            66788999999999888876654 67888 999999999999987654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.88  E-value=0.091  Score=44.40  Aligned_cols=104  Identities=15%  Similarity=0.201  Sum_probs=67.0

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH--------HHHHcC----CCCcccccccccccCC
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITT--------RVIAEG----LRPDQTVVSKIMTRNP  127 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~--------~~~~~~----~~~~~~~v~~~~~~~~  127 (294)
                      .+++|+-|  +.||+++     -+.+.|.+ +|+++.+-++.+++.        .++-.+    ...+...+.+.+....
T Consensus       188 TivfVTHD--idEA~kL-----adri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~  259 (309)
T COG1125         188 TIVFVTHD--IDEALKL-----ADRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGE  259 (309)
T ss_pred             EEEEEecC--HHHHHhh-----hceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccc
Confidence            44555554  8899987     46677887 799999999887763        222222    1122334445443322


Q ss_pred             e----EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090          128 I----FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD  171 (294)
Q Consensus       128 ~----~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~  171 (294)
                      .    .+.......+++..+...+...+||+| +|+++|.++..+++..
T Consensus       260 ~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         260 PADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             cccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            1    122333345566666667888999999 9999999999998753

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=94.21  E-value=0.074  Score=49.85  Aligned_cols=124  Identities=11%  Similarity=0.153  Sum_probs=88.7

Q ss_pred             CCcccchhccccC--CceeecCCCCHH-HHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHHHcCCCCccccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVS-DACRRMASRRVDAVLLTDAN--ALLSGIVTDKDITTRVIAEGLRPDQTVVSK  121 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~-~a~~~~~~~~~~~lpV~d~~--~~~~Givt~~di~~~~~~~~~~~~~~~v~~  121 (294)
                      +.....++|+|++  ++..+..+..+. +......+.+++.+||.+.+  .++-|++....+  .+..........++..
T Consensus       200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~  277 (498)
T KOG2118|consen  200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSE  277 (498)
T ss_pred             HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchh
Confidence            3466779999998  667777777776 55556668999999999863  233333333333  2222222455667888


Q ss_pred             ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHH
Q 041090          122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAI  173 (294)
Q Consensus       122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~  173 (294)
                      .+......++.++++.+.++.+.+.+.|.+.|.+...-+++++..++ ....
T Consensus       278 ~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l~~~-~~~~  328 (498)
T KOG2118|consen  278 SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLTLEDL-EEVV  328 (498)
T ss_pred             hhccccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEeccch-hhhc
Confidence            88888888999999999999999888888777775557888888887 5444

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.04  E-value=0.22  Score=42.17  Aligned_cols=58  Identities=19%  Similarity=0.138  Sum_probs=44.7

Q ss_pred             CcccchhccccCCc----eeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 041090           48 GGERTVKKLRLSKA----LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITT  105 (294)
Q Consensus        48 ~~~~~v~dl~~~~~----~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~  105 (294)
                      +...++.+.|.+..    -.+.....-.+++..+...+...+||+|++|+++|.+|..+++.
T Consensus       246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         246 LSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             cchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            45566777776533    22344556667888888999999999999999999999999974

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=87.35  E-value=0.41  Score=44.93  Aligned_cols=123  Identities=16%  Similarity=0.204  Sum_probs=81.6

Q ss_pred             Cccccccccccc--CCeEEcCCCcHH-HHHHHHHhCCCcEEEEEE-CC-EEEEEEehHHHHHHHHHHHHHHHhhchhHHH
Q 041090          114 PDQTVVSKIMTR--NPIFVTSDSLAI-EALQKMVQGKFRHLPVVE-NG-EVIAILDITKCLYDAISRMEKAAEQGSAIAA  188 (294)
Q Consensus       114 ~~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~~-~~vGivt~~dll~~~~~~~~~~~~~~~~~~~  188 (294)
                      +.+..++++|.+  .+.....+..+. +......+.+++++||.+ +. ..+|.    -|......-             
T Consensus       201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~----~L~~~~~~~-------------  263 (498)
T KOG2118|consen  201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGG----LLVMNLLRL-------------  263 (498)
T ss_pred             HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhH----HHHhhhhhh-------------
Confidence            334566777754  445556666665 444455678999999998 32 23333    121111110             


Q ss_pred             HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeeh
Q 041090          189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTS  268 (294)
Q Consensus       189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~  268 (294)
                                         .... ..+...++..++..  .+..++.++++.+.++.+.....|.+.|.+...-+|+++.
T Consensus       264 -------------------~~~~-~~~~~~~v~~~~~~--~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l  321 (498)
T KOG2118|consen  264 -------------------LQVE-VPLEPLPVSESALL--RLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLTL  321 (498)
T ss_pred             -------------------hccc-cccccccchhhhcc--ccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEec
Confidence                               0000 13345667888877  8999999999999999999999988888876677899999


Q ss_pred             hHHHHHHH
Q 041090          269 KDVLMRVV  276 (294)
Q Consensus       269 ~Dil~~~~  276 (294)
                      .|+ ....
T Consensus       322 ~~~-~~~~  328 (498)
T KOG2118|consen  322 EDL-EEVV  328 (498)
T ss_pred             cch-hhhc
Confidence            998 5665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
3fhm_A	165	Crystal Structure Of The Cbs-Domain Containing Prot		5e-12
4fry_A	157	The Structure Of A Putative Signal-Transduction Pro		4e-08
2rc3_A	135	Crystal Structure Of Cbs Domain, Ne2398 Length = 13		8e-08
2yzi_A	138	Crystal Structure Of Uncharacterized Conserved Prot		2e-06

>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein Atu1752 From Agrobacterium Tumefaciens Length = 165

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 62/113 (54%)
Query: 70  VSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF 129
           + +A   + + ++ AV++TDA+ ++ GI T++D+   V  +G    Q  VS  MT+N + 
Sbjct: 46  IGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNVVR 105
Query: 130 VTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQ 182
              +S   + ++ M  G+FRH+PV ENG +  I+ I   +   I  +E  AE 
Sbjct: 106 CQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGEIEAEAEH 158

>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein With Cbs Domains From Burkholderia Ambifaria Mc40-6 Length = 157

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           T+ +   V DA + MA + + A+L+ D + + +GIVT++D   +V+ +      T V +I
Sbjct: 25  TVTKNDFVYDAIKLMAEKGIGALLVVDGDDI-AGIVTERDYARKVVLQERSSKATRVEEI 83
Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDI 165
           MT    +V       E +  M + + RHLPV++ G++I ++ I
Sbjct: 84  MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISI 126

>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398 Length = 135

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 51  RTVKKLRLSKALTI----PEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTR 106
           +TVK L   K  T+    P+ ++ + A ++MA+  + A+L+     L+ GI+T++D + +
Sbjct: 6   KTVKHLLQEKGHTVVAIGPDDSVFN-AMQKMAADNIGALLVMKDEKLV-GILTERDFSRK 63
Query: 107 VIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDIT 166
                     T V +IMTR   +V  ++   + +  + + + RHLPV+++G+VI +L I 
Sbjct: 64  SYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIG 123
Query: 167 KCLYDAISRME 177
             + DAIS+ +
Sbjct: 124 DLVKDAISQHQ 134

>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Pyrococcus Horikoshii Length = 138

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Query: 53  VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL 112
           +K     K L +   T V +A R      V ++++ + +  + G  T  DI  RVI  GL
Sbjct: 9   IKVYXTKKLLGVKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL 68
Query: 113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA 172
            P    V +I TRN I    ++   E L+K  + + +H+ + E G+++ I  ++  L  +
Sbjct: 69  -PYDIPVERIXTRNLITANVNTPLGEVLRKXAEHRIKHILIEEEGKIVGIFTLSDLLEAS 127
Query: 173 ISRMEKA 179
             R+E A
Sbjct: 128 RRRLETA 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	4e-45
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	5e-10
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-07
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-41
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-08
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	5e-08
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-39
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-09
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-08
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-37
4fry_A	157	Putative signal-transduction protein with CBS DOM;	4e-10
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-30
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	8e-10
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	4e-08
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-25
1pvm_A	184	Conserved hypothetical protein TA0289; structural	7e-09
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-06
1pvm_A	184	Conserved hypothetical protein TA0289; structural	4e-04
1pbj_A	125	Hypothetical protein; structural genomics, domain,	6e-25
1pbj_A	125	Hypothetical protein; structural genomics, domain,	6e-11
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-06
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	1e-24
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	8e-10
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	9e-08
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-04
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	2e-24
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	5e-07
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	4e-05
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-23
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-20
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-22
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-09
3ddj_A	296	CBS domain-containing protein; structural genomics	7e-22
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-19
3ddj_A	296	CBS domain-containing protein; structural genomics	3e-16
3ddj_A	296	CBS domain-containing protein; structural genomics	3e-10
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-21
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-16
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-07
3fio_A	70	A cystathionine beta-synthase domain protein fused	2e-20
3fio_A	70	A cystathionine beta-synthase domain protein fused	2e-16
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-18
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	7e-11
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	2e-17
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-17
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-07
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	5e-17
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-09
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-05
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	1e-15
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	6e-09
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-05
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-14
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-13
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-14
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-07
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-14
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-08
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-14
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	5e-04
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	5e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	6e-14
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	7e-05
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	7e-05
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	9e-14
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-10
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-13
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	6e-04
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-13
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-08
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-13
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-04
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-12
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-11
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-08
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-11
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-05
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-04
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	5e-11
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-07
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-09
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	5e-06
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	2e-09
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	2e-06
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	8e-08
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	2e-05
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	2e-04
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	2e-04

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score =  149 bits (378), Expect = 4e-45
 Identities = 38/139 (27%), Positives = 70/139 (50%)

Query: 51  RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAE 110
           + +   +    +T+     + +A   + + ++ AV++TDA+ ++ GI T++D+   V  +
Sbjct: 27  KDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ 86

Query: 111 GLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY 170
           G    Q  VS  MT+N +    +S   + ++ M  G+FRH+PV ENG +  I+ I   + 
Sbjct: 87  GAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVK 146

Query: 171 DAISRMEKAAEQGSAIAAA 189
             I  +E  AE   A  A 
Sbjct: 147 ARIGEIEAEAEHIKAYIAG 165

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 202 SAPYAFIETLRERMFKPSLSTIITE-----NAKVAIVSPSDPVAVAAKKMREFRSNSALI 256
           S  +    + RE ++   ++T + +        V  V P   +  AA  +   +  + ++
Sbjct: 4   SHHHHHHSSGRENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVV 63

Query: 257 VTGS-KIQGILTSKDVLMRVVAQNLSPELTLVERFIM 292
                 + GI T +D++  V  Q  +     V    M
Sbjct: 64  TDADGVVLGIFTERDLVKAVAGQGAASLQQSVSV-AM 99

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 46/178 (25%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAIL---DITKCLYDAIS 174
           +     R+ + V  D    EA   +   K   + V + +G V+ I    D+ K +     
Sbjct: 29  LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAV----- 83

Query: 175 RMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVS 234
               A +  +++  +V                              S  +T+N  V    
Sbjct: 84  ----AGQGAASLQQSV------------------------------SVAMTKN--VVRCQ 107

Query: 235 PSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIM 292
            +       + M   R     +    ++ GI++  DV+ +     +  E   ++ +I 
Sbjct: 108 HNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVV-KARIGEIEAEAEHIKAYIA 164

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score =  138 bits (350), Expect = 3e-41
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 1/132 (0%)

Query: 50  ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIA 109
           +  +K     K L +   T V +A R M    V ++++ + +  + G  T  DI  RVI 
Sbjct: 6   KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 65

Query: 110 EGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCL 169
            GL  D  V  +IMTRN I    ++   E L+KM + + +H+ + E G+++ I  ++  L
Sbjct: 66  PGLPYDIPV-ERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLL 124

Query: 170 YDAISRMEKAAE 181
             +  R+E A  
Sbjct: 125 EASRRRLETAIS 136

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 212 RERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKD 270
           R    K  +   +T+   +  V PS  V  A++ M EF   S +++     + G  T  D
Sbjct: 1   RVMDMKAPIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSD 58

Query: 271 VLMRVVAQNLSPELTLVERFIM 292
           ++ RV+   L  ++ +    IM
Sbjct: 59  IIRRVIVPGLPYDIPVER--IM 78

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 46/158 (29%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDAIS 174
           +   MT+  + V   +   EA + M++     L V+ ++G V+      DI +       
Sbjct: 9   IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR------- 61

Query: 175 RMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVS 234
              +    G      VE +                     M +     +IT        +
Sbjct: 62  ---RVIVPGLPYDIPVERI---------------------MTRN----LIT-------AN 86

Query: 235 PSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272
            + P+    +KM E R    LI    KI GI T  D+L
Sbjct: 87  VNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLL 124

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score =  133 bits (338), Expect = 2e-39
 Identities = 39/133 (29%), Positives = 71/133 (53%), Gaps = 4/133 (3%)

Query: 48  GGERTVKKLRLSKA---LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDIT 104
           G  +TVK L   K    + I     V +A ++MA+  + A+L+     L+ GI+T++D +
Sbjct: 3   GHMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLV-GILTERDFS 61

Query: 105 TRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILD 164
            +          T V +IMTR   +V  ++   + +  + + + RHLPV+++G+VI +L 
Sbjct: 62  RKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLS 121

Query: 165 ITKCLYDAISRME 177
           I   + DAIS+ +
Sbjct: 122 IGDLVKDAISQHQ 134

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 230 VAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVER 289
           V  + P D V  A +KM      + L++   K+ GILT +D   +    +   + T V+ 
Sbjct: 19  VVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKE 78

Query: 290 FIM 292
            IM
Sbjct: 79  -IM 80

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 21/167 (12%), Positives = 51/167 (30%), Gaps = 47/167 (28%)

Query: 119 VSKIMTR---NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKCLYDA 172
           V  ++       + +  D     A+QKM       L V+++ +++ IL   D ++     
Sbjct: 8   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKS--- 64

Query: 173 ISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAI 232
                            V+ +                     M +     +         
Sbjct: 65  ------YLLDKPVKDTQVKEI---------------------MTRQ----VAY------- 86

Query: 233 VSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQN 279
           V  ++        + E R     ++   K+ G+L+  D++   ++Q+
Sbjct: 87  VDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQH 133

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score =  129 bits (326), Expect = 2e-37
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
             K        T+ +   V DA + MA + + A+L+ D + +  GIVT++D   +V+ + 
Sbjct: 14  KAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIA-GIVTERDYARKVVLQE 72

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYD 171
                T V +IMT    +V       E +  M + + RHLPV++ G++I ++ I   +  
Sbjct: 73  RSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKS 132

Query: 172 AISRMEKAAEQ 182
            I+  +    Q
Sbjct: 133 VIADQQFTISQ 143

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 45/177 (25%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKCLYDAISR 175
                 R    VT +    +A++ M +     L VV+  ++  I+   D  + +      
Sbjct: 15  AKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKV------ 68

Query: 176 MEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSP 235
                ++ S+ A  V                                I+T    V  V P
Sbjct: 69  ---VLQERSSKATRV------------------------------EEIMTAK--VRYVEP 93

Query: 236 SDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIM 292
           S         M E R     ++ G K+ G+++  D++ + V  +    ++ +E +I 
Sbjct: 94  SQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLV-KSVIADQQFTISQLEHYIH 149

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score =  109 bits (276), Expect = 3e-30
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
           T + +  +    + E   ++ A + M    + A+ +   +  L G++TD+DI  + +A G
Sbjct: 9   TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAG 68

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKC 168
           L P+     ++   +  +V +++   E L  M + + R +PV+    ++ I+   DI + 
Sbjct: 69  LDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARH 128

Query: 169 LYD 171
           L +
Sbjct: 129 LPE 131

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 54.9 bits (133), Expect = 8e-10
 Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 47/174 (27%)

Query: 111 GLRP-DQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DI 165
           G+ P   T    IM      V        A Q M +     LP+  ++  +  +L   DI
Sbjct: 1   GIDPFTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDI 60

Query: 166 TKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIIT 225
                     + K    G     A                    T  E         I  
Sbjct: 61  ----------VIKGLAAGLDPNTA--------------------TAGELARDS----IYY 86

Query: 226 ENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQN 279
                  V  +  +      M E +     +++  ++ GI+T  D + R + ++
Sbjct: 87  -------VDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEAD-IARHLPEH 132

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 227 NAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVAQNLSPELT 285
           NA V  V   + +  AA+ MRE    +  I     ++ G+LT +D++++ +A  L P   
Sbjct: 15  NAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTA 74

Query: 286 LVERFIM 292
                + 
Sbjct: 75  TAGE-LA 80

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 98.2 bits (245), Expect = 3e-25
 Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           T+   T V DA + M    +  +++ D N    G+++++ I  R I    +PD+  +  +
Sbjct: 21  TVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLV 80

Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCL-----YDAI 173
           M +    V SD    +    + +       VV + G V+ I+   D+++ L      D +
Sbjct: 81  MRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITDIL 140

Query: 174 SRMEKAAEQGSAIAAAVEGVERQW 197
                   Q       V  +E  +
Sbjct: 141 LSHRTKDYQHLCPKCGVGVLEPVY 164

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 47/176 (26%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDAIS 174
           V KIM  N   V  ++   +A++ M +     L V  +NG  + +L    I K     I 
Sbjct: 11  VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRF---IP 67

Query: 175 RMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVS 234
           R +K  E                             +R  M KP    I         V 
Sbjct: 68  RNKKPDEV---------------------------PIRLVMRKP----IPK-------VK 89

Query: 235 PSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVAQNLSPELTLVER 289
               V   A  + E       +V    ++ GI+T  D+  R +++    ++ L  R
Sbjct: 90  SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS-RYLSRASITDILLSHR 144

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVAQNLSPELTLV 287
               V+ +  V  A K M E      ++   +    G+L+ + ++ R + +N  P+   +
Sbjct: 18  NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPI 77

Query: 288 ERFIM 292
              +M
Sbjct: 78  RL-VM 81

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 49  GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVI 108
            E  ++ +       +     V D    ++   ++   + D    + GIVT  D+ +R +
Sbjct: 73  DEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDL-SRYL 131

Query: 109 AEGLRPDQT 117
           +     D  
Sbjct: 132 SRASITDIL 140

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 95.7 bits (239), Expect = 6e-25
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTV 118
           +   TI     + D  R        + ++      + GIVT  D+    IAEG    +  
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV-GIVTTWDVL-EAIAEGDDLAEVK 66

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKCLYD 171
           V ++M R+ + ++  +   EA +KMV+     L V E+ E+I ++   DI +    
Sbjct: 67  VWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMA 122

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 57.9 bits (141), Expect = 6e-11
 Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 45/163 (27%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKCLYDAISR 175
           V  +M  +   +   +   + L+  V+       VV+ G  + I+   D+ + + +    
Sbjct: 3   VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDL 62

Query: 176 MEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSP 235
            E                                 + E M +     ++T       +SP
Sbjct: 63  AE-------------------------------VKVWEVMERD----LVT-------ISP 80

Query: 236 SDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQ 278
              +  AA+KM +      L+    +I G++++ D+L   +A+
Sbjct: 81  RATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMAK 123

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVE 288
            V  +  +  +    +   E    S+++V      GI+T+ D ++  +A+        V 
Sbjct: 10  DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWD-VLEAIAEGDDLAEVKVW 68

Query: 289 RFIM 292
             +M
Sbjct: 69  E-VM 71

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 95.3 bits (238), Expect = 1e-24
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 50  ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIA 109
           E  VK+   ++ +++ +   ++D  + M  + + +V++ D N  + GI+T++DI  + I 
Sbjct: 3   EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPV-GIITERDIV-KAIG 60

Query: 110 EGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DI 165
           +G   +     + MT + I +  DS    AL  M Q   RHLPVV + G +  I+   DI
Sbjct: 61  KGKSLETKA-EEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDI 119

Query: 166 TKCLYDAISRMEK 178
           T+ + D    M +
Sbjct: 120 TRAIDDMFETMGE 132

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 54.9 bits (133), Expect = 8e-10
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 48/170 (28%)

Query: 115 DQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKCLYD 171
           ++ +V + M    I VT D+   +  + M +     + VV+  + + I+   DI K +  
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGK 61

Query: 172 AISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVA 231
             S   KA E                                          +T +  + 
Sbjct: 62  GKSLETKAEE-----------------------------------------FMTAS--LI 78

Query: 232 IVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVAQNL 280
            +    P+  A   MR+F      +V     ++GI++ +D + R +    
Sbjct: 79  TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRD-ITRAIDDMF 127

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 49.1 bits (118), Expect = 9e-08
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 215 MFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR 274
           M +  +   +     V  V+    +   AK M E    S ++V G+K  GI+T +D +++
Sbjct: 1   MEEEIVKEYMKTQ--VISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERD-IVK 57

Query: 275 VVAQNLSPELTLVERFIM 292
            + +  S E    E   M
Sbjct: 58  AIGKGKSLETKAEE--FM 73

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 46  GAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITT 105
           G   E   ++   +  +TI E + ++ A   M    +  + + D    L GI++ +DI T
Sbjct: 62  GKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDI-T 120

Query: 106 RVIAEGLR 113
           R I +   
Sbjct: 121 RAIDDMFE 128

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 95.0 bits (237), Expect = 2e-24
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLT--DANALLSGIVTDKDITTRVIA 109
              +L     +++PE   + +    +A  RV   +LT  D       +V+++DI  R +A
Sbjct: 6   RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL-RAVA 64

Query: 110 EGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKC 168
           + L  D      I   +PI V        A +KM +   RH+ VV +NGE++ +L I   
Sbjct: 65  QRLDLD-GPAMPIAN-SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDL 122

Query: 169 LYDAISRMEKAAEQGSA 185
            ++    +E A  +  A
Sbjct: 123 CFERAILLELATAEVPA 139

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 220 LSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT---GSKIQGILTSKDVLMRVV 276
            S ++        +  +  +   A ++ + R   A++       +   +++ +D ++R V
Sbjct: 7   TSELLKRP--PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERD-ILRAV 63

Query: 277 AQNLSPELTLVERFIM 292
           AQ L  +   +   I 
Sbjct: 64  AQRLDLDGPAMP--IA 77

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 51/161 (31%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV---ENGEVIAIL---DITKCLYDA 172
            S+++ R P+ +   +   E   ++ + +     +         +A++   DI + +   
Sbjct: 7   TSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ- 65

Query: 173 ISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAI 232
                                      +   P                  I         
Sbjct: 66  -------------------------RLDLDGP---------------AMPIAN---SPIT 82

Query: 233 VSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVL 272
           V  +DPV VAA+KMR       ++V  + ++ G+L+ +D+ 
Sbjct: 83  VLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 94.8 bits (236), Expect = 5e-23
 Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 31/224 (13%)

Query: 50  ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIA 109
              V+++     +T+ E   + +A     ++ V    + +    L  ++T++D+  R + 
Sbjct: 83  NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI-RALL 141

Query: 110 EGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCL 169
           + +  ++ +    +TR+ I  T      +  + MV+  FR LPVV  G ++ I  IT   
Sbjct: 142 DKIDENEVI-DDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGI--ITS-- 196

Query: 170 YDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAK 229
            D I  +             V  +                 + E M +     +IT    
Sbjct: 197 TDFIKLLGSDWAFNHMQTGNVREITNV-------------RMEEIMKRD----VIT---- 235

Query: 230 VAIVSPSDPVAVAAKKMREFRSNSALIVTG-SKIQGILTSKDVL 272
                  D +   A+ M      +  +V    +I+GI+T KDVL
Sbjct: 236 ---AKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVL 276

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 86.7 bits (215), Expect = 4e-20
 Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 61/240 (25%)

Query: 51  RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDI------ 103
           R +K  +  K +T+   T +  A   M   +   + + +A N  + GI+T  DI      
Sbjct: 4   RVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGG 63

Query: 104 -------TTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-E 155
                    +     L      V +IM  N I +  ++   EA++  +       P+V +
Sbjct: 64  GSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND 123

Query: 156 NGEVIAIL---DITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLR 212
             ++I+++   D+ + L D I   E   +                               
Sbjct: 124 ENQLISLITERDVIRALLDKIDENEVIDD------------------------------- 152

Query: 213 ERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272
                      IT +  V + +P + +   A+ M         +V+  ++ GI+TS D +
Sbjct: 153 ----------YITRD--VIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFI 200

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 89.7 bits (223), Expect = 3e-22
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 11/131 (8%)

Query: 50  ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIA 109
           +  VK    S  + I E   V DA   M    V  + + D +A+L G+++ KD+    I 
Sbjct: 16  KLQVKDF-QSIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIG 74

Query: 110 EGLRPDQTVVSKIMTRNP--IFVTSDSLAIEALQKMVQGKFRHLPVVENGE-------VI 160
           +        V  IMTR P       +   ++  + +++ +   LPV+++ +        +
Sbjct: 75  QQ-ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRV 133

Query: 161 AILDITKCLYD 171
              ++TK L  
Sbjct: 134 TKTNMTKILVS 144

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 25/197 (12%), Positives = 66/197 (33%), Gaps = 53/197 (26%)

Query: 98  VTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-EN 156
           +T K  T +++A+  +  +  V    +  P+ +  +    +A+  M       L VV  +
Sbjct: 1   MTGKTGT-QLLAD--KLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRD 56

Query: 157 GEVIAIL---DITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRE 213
             ++ +L   D+ +                                            ++
Sbjct: 57  AVLVGVLSRKDLLRAS----------------------------------------IGQQ 76

Query: 214 RMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIV----TGSKIQGILTSK 269
            +    +  I+T    + +    D V   AK + E + ++  ++     G ++ G +T  
Sbjct: 77  ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKT 136

Query: 270 DVLMRVVAQNLSPELTL 286
           + + +++      E+ L
Sbjct: 137 N-MTKILVSLSENEILL 152

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 91.7 bits (228), Expect = 7e-22
 Identities = 43/239 (17%), Positives = 88/239 (36%), Gaps = 45/239 (18%)

Query: 50  ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIA 109
              +        +T+   +    A   M +R   ++ + D N    GIVT+++    ++ 
Sbjct: 92  TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREF---LLL 148

Query: 110 EGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DI 165
                +   V   M+     +  +    +A++ M++  FR LPV+ ++ +V+ I+   + 
Sbjct: 149 YKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA 208

Query: 166 TKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIIT 225
            K L  A+ +++     G  +                            M       ++T
Sbjct: 209 IKQLAKAVDKLDPDYFYGKVVKDV-------------------------MVTN----LVT 239

Query: 226 ENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTG-SKIQGILTSKDVLMRVVAQNLSPE 283
                  +     V  AA +M   R  S LI+   + I+GI+T +D+L   +   L  E
Sbjct: 240 -------IDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL-IALHHILVME 290

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 84.0 bits (208), Expect = 5e-19
 Identities = 33/235 (14%), Positives = 76/235 (32%), Gaps = 54/235 (22%)

Query: 49  GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVI 108
               ++ L +     + +   +  A +++    +  +++ +    + G++T +D+ + V 
Sbjct: 18  QGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEK--IEGLLTTRDLLSTVE 75

Query: 109 ---------AEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGE 158
                     +      T +   MT NP+ V + S    A+  MV   F  LPVV  N +
Sbjct: 76  SYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDK 135

Query: 159 VIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKP 218
            + I          ++  E                             F+   ++     
Sbjct: 136 PVGI----------VTERE-----------------------------FLLLYKDLDEIF 156

Query: 219 SLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVL 272
            +   ++    V  +     +  A K M         ++    K+ GI+T  + +
Sbjct: 157 PVKVFMSTK--VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAI 209

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 76.0 bits (187), Expect = 3e-16
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 49  GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI----- 103
               VK    +K  TI +   +  A + M  R    + + D +  + GIVT  +      
Sbjct: 154 EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA 213

Query: 104 TTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAI 162
                 +       VV  +M  N + +   +    A  +M+  +   L ++ ++  +  I
Sbjct: 214 KAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGI 273

Query: 163 L---DITKCLYD 171
           +   D+   L+ 
Sbjct: 274 ITERDLLIALHH 285

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 31/173 (17%)

Query: 101 KDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVI 160
             I      E L      +  +M +NP  ++ +     A +K+ +G    + V  N ++ 
Sbjct: 4   DKIHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVA-NEKIE 62

Query: 161 AILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSL 220
            +L       D +S +E                            +  +     +    +
Sbjct: 63  GLLTTR----DLLSTVE-----------------------SYCKDSCSQGDLYHISTTPI 95

Query: 221 STIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVL 272
              +T N     V  +     A   M      S  +V  + K  GI+T ++ L
Sbjct: 96  IDYMTPN--PVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL 146

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 49  GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVI 108
             + VK + ++  +TI E   V+ A   M  +R+ ++L+ + +  + GI+T++D+    +
Sbjct: 225 YGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDL-LIAL 283

Query: 109 AEGLRPDQT 117
              L  ++ 
Sbjct: 284 HHILVMEKF 292

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 219 SLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQ 278
           ++ T++ +N    I+S  D +  A KK+ E      +IV   KI+G+LT++D+L  V + 
Sbjct: 21  NIETLMIKN--PPILSKEDRLGSAFKKINEGGI-GRIIVANEKIEGLLTTRDLLSTVESY 77

Query: 279 NLSPE 283
                
Sbjct: 78  CKDSC 82

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 89.8 bits (223), Expect = 3e-21
 Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 11/225 (4%)

Query: 50  ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIA 109
           E  +  L       + E   +  A + M       V++ D+     GI+T  DI  R  A
Sbjct: 59  EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA 118

Query: 110 EGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKC 168
           +  +     +     R    V   +    AL+ ++      LPVV   G ++ I+D T  
Sbjct: 119 KSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDL 178

Query: 169 LYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENA 228
           L D+       + + +A +     +E      F      +           ++ I+T + 
Sbjct: 179 LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKP-------VAEIMTRD- 230

Query: 229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTG-SKIQGILTSKDVL 272
            V + +P   V   A KM ++      ++ G   + G++   D+L
Sbjct: 231 -VIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 274

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 75.6 bits (186), Expect = 4e-16
 Identities = 36/215 (16%), Positives = 73/215 (33%), Gaps = 53/215 (24%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           TI      + A       +V +  + +    L GI++ K I        + PD+  ++ +
Sbjct: 13  TITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL-------VNPDEEQLAML 65

Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDAISRMEK 178
           + R+   V  +    +A + M++  +R + VV   G+ + IL   DI +  +    + + 
Sbjct: 66  VKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYK- 124

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
                      +E   +                                  V+IV    P
Sbjct: 125 --------GVEIEPYYQ--------------------------------RYVSIVWEGTP 144

Query: 239 VAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVL 272
           +  A K +    S +  +V     + GI+   D+L
Sbjct: 145 LKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 47/177 (26%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISRME 177
           V  IMT+NP+ +T  +    AL+   + K R  PVV + G+++ I          IS   
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGI----------ISVKR 52

Query: 178 KAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSD 237
                                            +     +  L+ ++  +  V +V  +D
Sbjct: 53  ---------------------------------ILVNPDEEQLAMLVKRD--VPVVKEND 77

Query: 238 PVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVAQNLSPELTLVERFIMR 293
            +  AAK M E+     ++V    K  GILT  D++ R  A++   +   +E +  R
Sbjct: 78  TLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQR 134

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 79.7 bits (197), Expect = 2e-18
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 10/128 (7%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI-------TTRVIAEGLRPD 115
           T+     ++DA   M +  +  V + DAN  L GIV+ +D+         R         
Sbjct: 17  TLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAF 76

Query: 116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKCLYDA 172
           +T + ++M  +   V   +   E+   M + K   LPVV    ++ I+   D      + 
Sbjct: 77  ETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINL 136

Query: 173 ISRMEKAA 180
           +   E++ 
Sbjct: 137 LELQEESE 144

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 39/166 (23%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDAIS 174
           V  +MTR+P  +       +A   M     RH+P+V  N +++ I+   D+      ++ 
Sbjct: 7   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 66

Query: 175 RMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVS 234
           R  +                                L E M       + +       V+
Sbjct: 67  RSAQGDSLAFET-----------------------PLFEVMHTD----VTS-------VA 92

Query: 235 PSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNL 280
           P   +  +A  M++ +     +V    + GI+T  D  + +    L
Sbjct: 93  PQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSD-FVTIAINLL 137

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 76.4 bits (189), Expect = 2e-17
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 64  IPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM 123
           +     + DA   +  + +    + D +  + GI TD D+  RV   G+      ++ +M
Sbjct: 43  VGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLR-RVFDTGVDMRDASIADVM 101

Query: 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCL 169
           TR  I +   +LA++AL  M       + V +   ++ ++ +   L
Sbjct: 102 TRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLL 147

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 75.4 bits (186), Expect = 3e-17
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 10/120 (8%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           T      V +A  +M   ++ ++ + D    + GIVT  DI   +I +    + T +  +
Sbjct: 20  TAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETT-IGDV 78

Query: 123 MTRNPIFVTSDSLAIEALQKMVQG-----KFRHLPVV-ENGEVIAIL---DITKCLYDAI 173
           MT++ I +  D+  +EA++KM            LPVV +N +++ I+   DI + +   I
Sbjct: 79  MTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKII 138

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 52/164 (31%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDAIS 174
           V  +MT+N I        +EA +KM++ K   LPV+ +  +VI I+   DI       + 
Sbjct: 10  VKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY----NLI 65

Query: 175 RMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVS 234
           R +   E                            T+ + M K     +IT       + 
Sbjct: 66  RDKYTLET---------------------------TIGDVMTKD----VIT-------IH 87

Query: 235 PSDPVAVAAKKMREFRSN----SALIVTGS--KIQGILTSKDVL 272
               +  A KKM          + L V     K+ GI++  D++
Sbjct: 88  EDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 74.5 bits (184), Expect = 5e-17
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           T      + +A + +    ++ + + D +  L GI+T  DI  + +A+  +     + +I
Sbjct: 13  TAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA-KALAQNKKT----IEEI 67

Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYD 171
           MTRN I    D        KM +     +PVV +   V+ I+   DI++    
Sbjct: 68  MTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 52/168 (30%)

Query: 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDA 172
           T+V  I+++ PI   S+   +EA + +++    HLP+V E+G+++ I+   DI K L   
Sbjct: 1   TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ- 59

Query: 173 ISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAI 232
                                                       K ++  I+T N  V  
Sbjct: 60  -------------------------------------------NKKTIEEIMTRN--VIT 74

Query: 233 VSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVAQN 279
               +PV   A KM ++  +   +V    ++ GI+TS+D+  R+    
Sbjct: 75  AHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS-RLFGGK 121

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 47  AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTR 106
           A  ++T++++     +T  E   V     +M+   +  V + D    + GIVT +DI +R
Sbjct: 58  AQNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDI-SR 116

Query: 107 VIAEG 111
           +    
Sbjct: 117 LFGGK 121

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 72.5 bits (178), Expect = 1e-15
 Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 36/184 (19%)

Query: 48  GGERTVKKL--RLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITT 105
           G   TV            +   T V DA   +  ++V  + + D N  L G+V+D D+  
Sbjct: 1   GTGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLA 60

Query: 106 RVIAEGLRPDQ--------------------------TVVSKIMTRNPIFVTSDSLAIEA 139
                G   +                            VV  +MT +P+ V   +   +A
Sbjct: 61  LDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDA 120

Query: 140 LQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDAISRMEKAAEQGSAIAAAVEGVER 195
            + +++ KFR LPVV  +G++I IL   ++ +    A  ++++ A+  S  +     +  
Sbjct: 121 ARLLLETKFRRLPVVDADGKLIGILTRGNVVR----AALQIKRNADSISGRSQNDTNLFP 176

Query: 196 QWGS 199
              S
Sbjct: 177 DVDS 180

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 53.6 bits (129), Expect = 6e-09
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 21/177 (11%)

Query: 119 VSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISR 175
           V   MT  +N   V   +   +AL+ +V+ K   LPV+ +N  ++ ++      YD ++ 
Sbjct: 6   VGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVV----SDYDLLAL 61

Query: 176 MEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITE--NAKVAIV 233
              +    +                            +++   +   ++ +       +V
Sbjct: 62  DSISGRSQN----------DTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVV 111

Query: 234 SPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVAQNLSPELTLVER 289
             S  +  AA+ + E +     +V    K+ GILT  +V+ R   Q      ++  R
Sbjct: 112 RDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVV-RAALQIKRNADSISGR 167

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 1/122 (0%)

Query: 13  RAPSTSKRTSSSENGGNLSKPPSPQGESSSSVGGAGGERTVKKLRLSKALTIPEGTIVSD 72
              S S R+ +  N                 +      + V  L     L + + T + D
Sbjct: 60  ALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLED 119

Query: 73  ACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTS 132
           A R +   +   + + DA+  L GI+T  ++  R   +  R   ++  +      +F   
Sbjct: 120 AARLLLETKFRRLPVVDADGKLIGILTRGNV-VRAALQIKRNADSISGRSQNDTNLFPDV 178

Query: 133 DS 134
           DS
Sbjct: 179 DS 180

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 72.3 bits (177), Expect = 1e-14
 Identities = 33/244 (13%), Positives = 68/244 (27%), Gaps = 49/244 (20%)

Query: 50  ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVI 108
                +      + I     + DA   +   ++  + + D  +     I+T K I   + 
Sbjct: 117 REVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK 176

Query: 109 AEGLRPDQTV--------VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEV 159
                  +          +      N   V + +    AL   VQ +   LPVV E G V
Sbjct: 177 LFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRV 236

Query: 160 IAIL---DITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMF 216
           + I    D+     +                            N           R   F
Sbjct: 237 VDIYSKFDVINLAAEKTYN------------------------NLDVSVTKALQHRSHYF 272

Query: 217 KPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRV 275
           +     ++            + +     ++ E   +  ++V     ++GI++  D+L  +
Sbjct: 273 EG----VLK-------CYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 321

Query: 276 VAQN 279
           V   
Sbjct: 322 VLTG 325

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 40/292 (13%), Positives = 89/292 (30%), Gaps = 58/292 (19%)

Query: 30  LSKPPSPQGESSSSVGGAGGERTVKKLRL----------SKALTIPEGTIVSDACRRMAS 79
               P+P+ E S     +        ++           SK +       V  A   + +
Sbjct: 6   AESAPAPENEHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVT 65

Query: 80  RRVDAVLLTDA-NALLSGIVTDKDI--------------TTRVIAEGLRPDQTVVSKIMT 124
             V A  L D+      G++T  D                  +    +   + V  +   
Sbjct: 66  NGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSF 125

Query: 125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVV--ENGEVIAILDITKCLYDAISRMEKAAEQ 182
           +  + ++ ++   +A+  +++ K   LPV+  E+G  + IL                   
Sbjct: 126 KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILT-----------------H 168

Query: 183 GSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVA 242
              +      +       F      +E L+   +             +A+V  + PV VA
Sbjct: 169 KRILKFLKLFITEFPKPEFM--SKSLEELQIGTYAN-----------IAMVRTTTPVYVA 215

Query: 243 AKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVAQNLSPELTLVERFIMR 293
                + R ++  +V    ++  I +  DV+     +  +     V + +  
Sbjct: 216 LGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQH 267

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 15/144 (10%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
            VKK        + E   V +   RM   + +  ++ D      G+V  +D+        
Sbjct: 14  KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL----- 68

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITK 167
                + V   ++    FV  +     AL   ++ +  +LPVV E   +   +   D  +
Sbjct: 69  --DLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLE 126

Query: 168 CLYDAISRMEKAAEQGSAIAAAVE 191
               A+         G   +  +E
Sbjct: 127 ----ALIEALAMDVPGIRFSVLLE 146

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 22/162 (13%), Positives = 42/162 (25%), Gaps = 47/162 (29%)

Query: 113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYD 171
                 V K +T++   V   +   E L +M Q +     V    G    +  + K    
Sbjct: 9   HHHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGV--VNK---- 62

Query: 172 AISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVA 231
                                                E L +     S+   ++      
Sbjct: 63  -------------------------------------EDLLDLDLDSSVFNKVSLP--DF 83

Query: 232 IVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVL 272
            V   D +  A     E +     +V    +++G ++  D L
Sbjct: 84  FVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFL 125

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 67.6 bits (166), Expect = 3e-14
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 13/132 (9%)

Query: 51  RTVKKLRL---SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRV 107
             +  L +       +    T V D  + +   RV +V + D N  L  +    D+   +
Sbjct: 8   IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI 67

Query: 108 IAEGLRPDQTVVSKIMTR------NPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVI 160
                      V + + R           T +      +  + + +     VV + G ++
Sbjct: 68  KGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLV 127

Query: 161 AIL---DITKCL 169
            +L   DI K +
Sbjct: 128 GVLTLSDILKYI 139

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 36/167 (21%)

Query: 115 DQTV--VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYD 171
              +  ++ I   N       +  I+ +Q + QG+   +P++ ENG +I +       YD
Sbjct: 7   KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINV--YEA--YD 62

Query: 172 AISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVA 231
            +  ++                                ++ E +          +   V 
Sbjct: 63  VLGLIKGGIYN-----------------------DLSLSVGEAL-----MRRSDDFEGVY 94

Query: 232 IVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVA 277
             + +D ++     +R+ R +   +V    ++ G+LT  D+L  ++ 
Sbjct: 95  TCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 141

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 67.4 bits (165), Expect = 4e-14
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL----RPDQTV 118
            +  G  +  A   +      A+ + D    L G+++   I   ++        R ++  
Sbjct: 29  HVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMK 88

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDAIS 174
           V ++M ++   +  +    +AL+  +   F  +  V E+G    IL    I K L   + 
Sbjct: 89  VEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVR 146

Query: 175 RMEK 178
           +  +
Sbjct: 147 QHNR 150

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 22/159 (13%), Positives = 53/159 (33%), Gaps = 42/159 (26%)

Query: 119 VSKIMTRNP--IFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISR 175
           V  +M  +     V   +    AL  +V+  +  +PV+    ++  ++     L D I  
Sbjct: 17  VKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMIL-DGILG 75

Query: 176 MEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSP 235
           +E+                                  ER+ +  +  ++ ++  + ++  
Sbjct: 76  LERIEF-------------------------------ERLEEMKVEQVMKQD--IPVLKL 102

Query: 236 SDPVAVAAKKMREFRSNSALIVTGS--KIQGILTSKDVL 272
            D  A A +   +   +  +         +GILT + +L
Sbjct: 103 EDSFAKALEMTID---HPFICAVNEDGYFEGILTRRAIL 138

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 10/68 (14%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 206 AFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQG 264
           A I   ++   +  +  ++  + KVA V   + +  A   + +   ++  ++    K+ G
Sbjct: 3   AMISIPKDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHG 62

Query: 265 ILTSKDVL 272
           ++++  +L
Sbjct: 63  LISTAMIL 70

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 66.5 bits (163), Expect = 9e-14
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 19/138 (13%)

Query: 51  RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAE 110
           + V KL   K   + E T + +   R+    V   +    +  L G++    +       
Sbjct: 16  KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFH 75

Query: 111 GL--------------RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-E 155
                           R      S+IM   P++V  D+   EAL+ M+    + +PVV E
Sbjct: 76  FFGFIPKEELIRSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE 134

Query: 156 NGEVIAIL---DITKCLY 170
            GE++  L   +I   L+
Sbjct: 135 KGEIVGDLNSLEILLALW 152

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 28/162 (17%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISRME 177
           V K+++  P  V  D+   E + ++++        V  + +++ ++ +   L  +     
Sbjct: 18  VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFF 77

Query: 178 KAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSD 237
               +   I ++++ +  +                E M  P     +        V    
Sbjct: 78  GFIPKEELIRSSMKRLIAK-------------NASEIMLDP-----VY-------VHMDT 112

Query: 238 PVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVAQ 278
           P+  A K M +       +V    +I G L S ++L   + +
Sbjct: 113 PLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL-LALWK 153

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL----RPDQTV 118
            +  G  +  A   +      A+ + D +  L G++    I   +         + DQ  
Sbjct: 28  HVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQIT 87

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDAIS 174
           V ++M  +   +  +   ++    ++   F  + V  +      I     + K L   I 
Sbjct: 88  VEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIR 145

Query: 175 RMEKAAEQGS 184
            + K  E GS
Sbjct: 146 SLNK--EGGS 153

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 9/66 (13%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 208 IETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGIL 266
           I    +++ + ++   + E  KVA V   + +  A   + +    +  ++  S ++ G++
Sbjct: 4   ISLQSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63

Query: 267 TSKDVL 272
            +  ++
Sbjct: 64  GTNMIM 69

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 19/162 (11%), Positives = 52/162 (32%), Gaps = 42/162 (25%)

Query: 119 VSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISR 175
           V + M        V   +    AL  + +  +  +PV+  +  +  ++     + ++I  
Sbjct: 16  VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM-NSIFG 74

Query: 176 MEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSP 235
           +E+                                  E++ + ++  ++  +  +  +  
Sbjct: 75  LERIEF-------------------------------EKLDQITVEEVMLTD--IPRLHI 101

Query: 236 SDPVAVAAKKMREFRSNSALIVTGS--KIQGILTSKDVLMRV 275
           +DP+      +     N  + V       +GI T + VL  +
Sbjct: 102 NDPIMKGFGMVIN---NGFVCVENDEQVFEGIFTRRVVLKEL 140

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL----RPDQTV 118
            +  G  +  A   +      A+ + D +  L G+++   +   ++        R +   
Sbjct: 25  HVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMK 84

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCLYDAIS 174
           V ++M RN   +  D   ++A+  +V   F  + V  ++G    I    ++ K L   + 
Sbjct: 85  VEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLH 142

Query: 175 RMEK 178
           R   
Sbjct: 143 RPNG 146

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 42/162 (25%)

Query: 119 VSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISR 175
           V   +        V   +    AL  + +  +  +PV+  + ++  ++ +T  + DAI  
Sbjct: 13  VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMM-DAILG 71

Query: 176 MEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSP 235
           +E+                                  ER+    +  ++  N  +  +  
Sbjct: 72  LERIEF-------------------------------ERLETMKVEEVMNRN--IPRLRL 98

Query: 236 SDPVAVAAKKMREFRSNSALIVTGS--KIQGILTSKDVLMRV 275
            D +  A   +     +  + V        GI T ++VL ++
Sbjct: 99  DDSLMKAVGLIVN---HPFVCVENDDGYFAGIFTRREVLKQL 137

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 8/66 (12%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 208 IETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGIL 266
           +        + ++   +    KVA V P + +  A   + +   ++  ++    K+ G++
Sbjct: 1   MTWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI 60

Query: 267 TSKDVL 272
           +   ++
Sbjct: 61  SMTMMM 66

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 65.0 bits (158), Expect = 3e-12
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 10/129 (7%)

Query: 51  RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAE 110
             +  +      +    T V D  + +   RV +V + D N  L  +    D+   +   
Sbjct: 190 GDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG 249

Query: 111 GLRPDQTVVSKIMTR------NPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL 163
                   V + + R           T +      +  + + +     VV + G ++ +L
Sbjct: 250 IYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVL 309

Query: 164 ---DITKCL 169
              DI K +
Sbjct: 310 TLSDILKYI 318

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 63.4 bits (154), Expect = 1e-11
 Identities = 35/226 (15%), Positives = 78/226 (34%), Gaps = 44/226 (19%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDAN-----ALLSGIVTDKDITTRVIAEGLRPDQ- 116
           +I     + +AC +M   R   + L D +      ++  ++T   I   V          
Sbjct: 126 SIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFL 185

Query: 117 ----TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYD 171
                 ++ I   N       +  I+ +Q + QG+   +P++ ENG +I + +      D
Sbjct: 186 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAY----D 241

Query: 172 AISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVA 231
            +  ++                      + S         R   F+     + T      
Sbjct: 242 VLGLIKGGIYN-----------------DLSLSVGEALMRRSDDFEG----VYT------ 274

Query: 232 IVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVV 276
             + +D ++     +R+ R +   +V    ++ G+LT  D+L  ++
Sbjct: 275 -CTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 319

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 36/291 (12%), Positives = 82/291 (28%), Gaps = 54/291 (18%)

Query: 30  LSKPPSPQGESSSSVGGAGGERTVKKLRL----------SKALTIPEGTIVSDACRRMAS 79
           ++KP     E  S       E   K L             + + +    +V  +   +  
Sbjct: 1   MAKPTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQ 60

Query: 80  RRVDAVLLTDA-NALLSGIVTDKDITTRVIAEGLRPDQ---------------TVVSKIM 123
             + +  L D+  +  +G++T  D    +      PD+                    + 
Sbjct: 61  NSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVD 120

Query: 124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQG 183
             +   +       EA  KM++ +   +P+++  E      +   L              
Sbjct: 121 QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVL-------------- 166

Query: 184 SAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAA 243
                     + +     +        L+     P     I     +     + PV    
Sbjct: 167 ---------TQYRILKFVALNCRETHFLK----IPIGDLNIITQDNMKSCQMTTPVIDVI 213

Query: 244 KKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVAQNLSPELTLVERFIMR 293
           + + + R +S  I+  +  +  +  + DVL  +     +     V   +MR
Sbjct: 214 QMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 264

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 6/117 (5%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
           T   L  +       G   +DA RR+A+       + D    L G+V    +      +G
Sbjct: 6   TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYL-GMVHLSRL--LEGRKG 62

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITK 167
               +  + + +              + L  +   K   +P+  E+G    +  +++
Sbjct: 63  WPTVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGV--VSR 117

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 16/157 (10%), Positives = 44/157 (28%), Gaps = 43/157 (27%)

Query: 118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRME 177
             S +   +    T      +A +++        PV++    + ++ +            
Sbjct: 6   TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHL------------ 53

Query: 178 KAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSD 237
                 S +    +G                E L E + +            V    P +
Sbjct: 54  ------SRLLEGRKGWPTV-----------KEKLGEELLE-----------TVRSYRPGE 85

Query: 238 PVAVAAKKMREFRSNSALIVTGS--KIQGILTSKDVL 272
            +      +   +  S + +     + +G+++ K +L
Sbjct: 86  QLFDNLISVAAAKC-SVVPLADEDGRYEGVVSRKRIL 121

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 227 NAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTL 286
                + +     A AA+++       A ++ G +  G++     L+       + +  L
Sbjct: 12  ETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSR-LLEGRKGWPTVKEKL 70

Query: 287 VERFIMRI 294
            E  +  +
Sbjct: 71  GEELLETV 78

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 13/153 (8%)

Query: 51  RTVKKLRL---SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRV 107
             + ++ +   S   T    T V D  + +A + + AV + ++   L  +    D+   +
Sbjct: 182 VPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLI 241

Query: 108 IAEGLRPDQTVVSKIMTR------NPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVI 160
                      V + + +            +          +   +   L VV EN ++ 
Sbjct: 242 QDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLE 301

Query: 161 AIL---DITKCLYDAISRMEKAAEQGSAIAAAV 190
            IL   DI   +    +      EQ     +AV
Sbjct: 302 GILSLADILNYIIYDKTTTPGVPEQTDNFESAV 334

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 29/235 (12%), Positives = 76/235 (32%), Gaps = 53/235 (22%)

Query: 65  PEGTIVSDACRRMASRRVDAVLLTDAN-----ALLSGIVTDKDITTRVIAEGLRPDQTVV 119
           P  +++ DAC  M+  R   + L D +      ++  ++T   I  + I+   +    + 
Sbjct: 124 PMHSLM-DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL-KFISMNCKETAMLR 181

Query: 120 SKI------MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKCL 169
             +         N    + ++   + ++ + +     +P+V   G ++ +    D+   +
Sbjct: 182 VPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLI 241

Query: 170 YDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAK 229
            D                                      ++ E + K            
Sbjct: 242 QDGDYSN------------------------------LDLSVGEALLKRP-----ANFDG 266

Query: 230 VAIVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVAQNLSPE 283
           V     +D +      ++  R +   +V  + K++GIL+  D+L  ++    +  
Sbjct: 267 VHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTP 321

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 29/160 (18%)

Query: 63  TIPEGTIVSDACRRMASRRVDA--VLLTDANALLSGIVTDKDITTRV------------- 107
              +   V D    ++        V+++  +  L G V  +D+   +             
Sbjct: 29  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 88

Query: 108 ----------IAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENG 157
                           P    +  I+  +P  VT  +     +    +   R   V  NG
Sbjct: 89  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 148

Query: 158 EVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQW 197
            ++ I  ITK   D +  + + A Q        E +E  +
Sbjct: 149 RLLGI--ITK--KDVLKHIAQMANQDPDSILFNEFLEVLF 184

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 30/171 (17%)

Query: 114 PDQTVVSKIMTRNP------IFVTSDSLAIEALQKMVQGKFRHLPVVENGE------VIA 161
             +T+   +M          +         +    + +  +   PVV + E       + 
Sbjct: 8   AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVL 67

Query: 162 ILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLS 221
             D+   + +A  + +              GV       F+     +        K  L 
Sbjct: 68  RRDLIISIENARKKQD--------------GVVSTSIIYFTEHSPPLPPYTPPTLK--LR 111

Query: 222 TIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272
            I+  +     V+   P+ +     R+      L+    ++ GI+T KDVL
Sbjct: 112 NILDLS--PFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVL 160

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 16/164 (9%), Positives = 45/164 (27%), Gaps = 27/164 (16%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           V   M  +   +  D+   E ++ +        P+VE+ E   ++ I +           
Sbjct: 15  VEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQ----------- 63

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
                            Q      A         ++  +  L+           +     
Sbjct: 64  ---------------RAQLVQALQAEPPSRAPGHQQCLQDILARGCPTEPVTLTLFSETT 108

Query: 239 VAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSP 282
           +  A    +     S  + +  +  G ++  ++  + ++   +P
Sbjct: 109 LHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMK-KAISNLTNP 151

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 14/139 (10%)

Query: 51  RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA--NALLSGIVTDKDITTRVI 108
             V+        T+ + T + +  + + S  V    L ++  + +L GIV    +   + 
Sbjct: 13  VRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ 72

Query: 109 AEG---------LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEV 159
           AE             D            + + S++   +A         + L V   G  
Sbjct: 73  AEPPSRAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRA 132

Query: 160 IAIL---DITKCLYDAISR 175
           +  +   ++ K + +  + 
Sbjct: 133 VGCVSWVEMKKAISNLTNP 151

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 51.1 bits (121), Expect = 8e-08
 Identities = 33/233 (14%), Positives = 84/233 (36%), Gaps = 13/233 (5%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
            V+ L + K   +     +  A   M  + + ++ + D N  L G+++  +IT   +   
Sbjct: 8   KVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIW 67

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRH--------LPVVENGEVIAIL 163
                   +  +      +++++  I   +K+  GK              +  G++    
Sbjct: 68  DSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAG 127

Query: 164 DITKCLYDAISRMEKA--AEQGSAIAAAVEGVERQWG-SNFSAPYAFIETLRERMFKPSL 220
           D  +   + I           G   +  +  + ++   +  + P+      R  +    +
Sbjct: 128 DRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLIVQSLPV 187

Query: 221 STIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVL 272
             ++T++  VA VS  D V      M E R ++  ++  + K+ G +    ++
Sbjct: 188 DYVMTKDNLVA-VSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 13/167 (7%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGE----VIAILDITKCLYDAIS 174
           V  +       +  +     A   M     + +PV +       +++  +IT    D   
Sbjct: 9   VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWD 68

Query: 175 RMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVS 234
               A    S               N        + +   M   SL   I+E        
Sbjct: 69  SNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD 128

Query: 235 PSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLS 281
            ++  A   +        S LIVTG    G   SK+++      N++
Sbjct: 129 RAEIQAELIE-----LKVSLLIVTG----GHTPSKEIIELAKKNNIT 166

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 5e-06
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 40/161 (24%)

Query: 152 PVVENGEVIAILDITKCL-----YDAI----SRMEKA--------AEQGSAIAAAVEGVE 194
             V+N +   + D+ K +      D I      +           ++Q   +   VE V 
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 195 RQWGSNFSAPYAFI-ETLRERMFKPSLSTIITENAK------VAIVSP-----SDPVAVA 242
           R    N    Y F+   ++    +PS+ T +    +        + +        P    
Sbjct: 88  RI---N----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 243 AKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPE 283
            + + E R    +++ G    G    K  +   V  +   +
Sbjct: 141 RQALLELRPAKNVLIDGVL--GS--GKTWVALDVCLSYKVQ 177

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 17/112 (15%)

Query: 62  LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR--PDQTVV 119
           +TI     V  A   M    +D + + +   ++ GI+T KD         +     + V 
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVVEDEKVV-GIITKKD---------IAAREGKLV- 152

Query: 120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGE---VIAILDITK 167
            ++MT+  I V       EAL+ M++ +   LPVV E G+   +I + D+  
Sbjct: 153 KELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVA 204

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 14/112 (12%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           T+     ++D              +   N  L GI+T +D+  R + +  +     V+ +
Sbjct: 101 TVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV--RFVTDLTKS----VAAV 154

Query: 123 MTRNPIFVTSD---SLAIEALQKMVQGKFRHLPVV-ENGEV---IAILDITK 167
           MT      T     + A E  +KM + +   + VV +  ++   I   D  K
Sbjct: 155 MTPKERLATVKEGATGA-EVQEKMHKARVEKILVVNDEFQLKGMITAKDFHK 205

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 14/112 (12%)

Query: 63  TIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI 122
           T+     V +A   MA  ++  + + D    L G++T++D+  R      +     +  +
Sbjct: 107 TVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV--RFEKNLSKK----IKDL 160

Query: 123 MTRNPIFVTSD---SLAIEALQKMVQGKFRHLPVV-ENGEV---IAILDITK 167
           MT     + +    SL  +A + + Q +   LP+V ++ ++   I I DI  
Sbjct: 161 MTPREKLIVAPPDISLE-KAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMS 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
3ddj_A	296	CBS domain-containing protein; structural genomics	99.96
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.96
3ddj_A	296	CBS domain-containing protein; structural genomics	99.95
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.95
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.95
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.94
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.93
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.93
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.92
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.92
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.92
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.91
4esy_A	170	CBS domain containing membrane protein; structural	99.87
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.86
4esy_A	170	CBS domain containing membrane protein; structural	99.85
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.85
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.83
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.83
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.83
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.83
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.83
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.83
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.83
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.83
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.83
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.82
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.82
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.82
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.82
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.82
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.82
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.82
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.82
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.82
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.81
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.81
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.81
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.81
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.81
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.8
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.8
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.8
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.8
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.8
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.79
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.79
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.79
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.79
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.79
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.78
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.78
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.78
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.78
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.78
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.78
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.78
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.78
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.77
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.77
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.77
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.77
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.77
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.76
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.76
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.76
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.75
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.75
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.75
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.75
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.75
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.75
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.75
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.75
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.75
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.74
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.74
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.74
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.74
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.73
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.73
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.72
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.72
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.72
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.71
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.71
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.71
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.71
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.7
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.7
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.7
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.7
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.7
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.69
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.69
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.68
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.68
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.67
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.66
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.65
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.64
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.64
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.64
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.63
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.56
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.56
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.55
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.53
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.51
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.51
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.49
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.46
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.42
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.41
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.39
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.38
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.36
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.34
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.33
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.32
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.31
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.29
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.24
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.23
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.22
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.17
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.13
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.11
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.57
1tif_A	78	IF3-N, translation initiation factor 3; IF3 N-term	82.13

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.96  E-value=4.7e-29  Score=216.77  Aligned_cols=212  Identities=16%  Similarity=0.197  Sum_probs=172.5

Q ss_pred             CCCCCCCcCCCCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC----
Q 041090           37 QGESSSSVGGAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL----  112 (294)
Q Consensus        37 ~~~~~~~~~~~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~----  112 (294)
                      .+-.+.|.++.|...+|+|+|.++++++++++|+.+|++.|.+++++.+||+|  |+++|++|.+||++.+.....    
T Consensus         6 ~~~~~~~~~~~~~~~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d--~~l~GivT~~Di~~~~~~~~~~~~~   83 (296)
T 3ddj_A            6 IHHHHHHENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKDSCS   83 (296)
T ss_dssp             --------CCTTCCSSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC---CC
T ss_pred             cccchhhhhhhhcccCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC--CeEEEEEeHHHHHHHhccccccccc
Confidence            34455667889999999999999999999999999999999999999999999  899999999999854421110    


Q ss_pred             -----CCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhH
Q 041090          113 -----RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAI  186 (294)
Q Consensus       113 -----~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~  186 (294)
                           .....+++++|.++++++.+++++.++++.|.+++++++||+| +|+++|++|..|++....             
T Consensus        84 ~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~-------------  150 (296)
T 3ddj_A           84 QGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK-------------  150 (296)
T ss_dssp             HHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG-------------
T ss_pred             chhhHHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhh-------------
Confidence                 1124689999999999999999999999999999999999998 899999999999875321             


Q ss_pred             HHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEe
Q 041090          187 AAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGI  265 (294)
Q Consensus       187 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGi  265 (294)
                                                ......++.++|.+  ++.++.+++++.+++++|.+++++.+||+| +|+++|+
T Consensus       151 --------------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Gi  202 (296)
T 3ddj_A          151 --------------------------DLDEIFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGI  202 (296)
T ss_dssp             --------------------------GSCCCCBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEE
T ss_pred             --------------------------cccccccHHHhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEE
Confidence                                      11234578999976  899999999999999999999999999999 8999999


Q ss_pred             eehhHHHHHHHHccCC------CCcceeeeccc
Q 041090          266 LTSKDVLMRVVAQNLS------PELTLVERFIM  292 (294)
Q Consensus       266 vt~~Dil~~~~~~~~~------~~~~~v~~~~~  292 (294)
                      ||..|+++.+. ....      ....++.++|+
T Consensus       203 vt~~dl~~~~~-~~~~~~~~~~~~~~~v~~~m~  234 (296)
T 3ddj_A          203 VTVVNAIKQLA-KAVDKLDPDYFYGKVVKDVMV  234 (296)
T ss_dssp             EEHHHHHHHHH-HHHHHTCTHHHHTCBHHHHSB
T ss_pred             EEHHHHHHHHH-HHHhhcChhhhcCcCHHHHhC
Confidence            99999995544 2211      12456777775

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.96  E-value=2.8e-27  Score=203.57  Aligned_cols=195  Identities=21%  Similarity=0.320  Sum_probs=163.3

Q ss_pred             ccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeE
Q 041090           50 ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF  129 (294)
Q Consensus        50 ~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~  129 (294)
                      +.+|+++|.++++++++++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+. ..... ..+++++|.+++++
T Consensus        83 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~-~~~~~-~~~v~~~m~~~~~~  160 (280)
T 3kh5_A           83 NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALL-DKIDE-NEVIDDYITRDVIV  160 (280)
T ss_dssp             TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHG-GGSCT-TCBSGGGCBCSCCC
T ss_pred             hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHh-hcCCC-CCCHHHHhCCCCeE
Confidence            56899999999999999999999999999999999999999999999999999975543 33222 45899999989999


Q ss_pred             EcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHH
Q 041090          130 VTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIE  209 (294)
Q Consensus       130 v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  209 (294)
                      +++++++.++++.|.+++++++||+++|+++|++|..|+++..........               .....         
T Consensus       161 v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~~~~~~~~~---------------~~~~~---------  216 (280)
T 3kh5_A          161 ATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNH---------------MQTGN---------  216 (280)
T ss_dssp             BCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHTSHHHHHH---------------HHSCC---------
T ss_pred             ECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHhhhhhhhh---------------hcccc---------
Confidence            999999999999999999999999998999999999999876543211000               00000         


Q ss_pred             HHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          210 TLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       210 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                        .......++.++|.+  ++.++.+++++.+|+++|.+++++++||+| +|+++|+||..||++.
T Consensus       217 --~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~  278 (280)
T 3kh5_A          217 --VREITNVRMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKY  278 (280)
T ss_dssp             --THHHHHCBHHHHSBS--SCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGG
T ss_pred             --hhhhhCCcHHHHhcC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHh
Confidence              001124678999976  999999999999999999999999999999 6799999999999843

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.95  E-value=2.4e-27  Score=206.05  Aligned_cols=193  Identities=19%  Similarity=0.286  Sum_probs=166.3

Q ss_pred             cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090           49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI  128 (294)
Q Consensus        49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  128 (294)
                      ...+|+++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+ ...  ....+++++|.++++
T Consensus        91 ~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~-~~~--~~~~~v~~~m~~~~~  167 (296)
T 3ddj_A           91 STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY-KDL--DEIFPVKVFMSTKVQ  167 (296)
T ss_dssp             HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG-GGS--CCCCBHHHHSBCSCC
T ss_pred             hcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhh-hcc--cccccHHHhhcCCCe
Confidence            36789999999999999999999999999999999999999999999999999997433 222  224589999999999


Q ss_pred             EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhh
Q 041090          129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAF  207 (294)
Q Consensus       129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  207 (294)
                      ++.+++++.++++.|.+++++++||+| +|+++|++|..|+++.+...+.....                          
T Consensus       168 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~--------------------------  221 (296)
T 3ddj_A          168 TIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDP--------------------------  221 (296)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCT--------------------------
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcCh--------------------------
Confidence            999999999999999999999999999 89999999999998875532211000                          


Q ss_pred             HHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHH
Q 041090          208 IETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVA  277 (294)
Q Consensus       208 ~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~  277 (294)
                           ......++.++|.+  ++.++.+++++.+|+++|.+++++++||+| +|+++|+||+.||++.+..
T Consensus       222 -----~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~  285 (296)
T 3ddj_A          222 -----DYFYGKVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH  285 (296)
T ss_dssp             -----HHHHTCBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             -----hhhcCcCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHH
Confidence                 11234679999977  999999999999999999999999999999 8999999999999966554

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.95  E-value=3.4e-27  Score=203.03  Aligned_cols=182  Identities=20%  Similarity=0.258  Sum_probs=155.5

Q ss_pred             hccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHH--------cCC-----CCccccc
Q 041090           54 KKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIA--------EGL-----RPDQTVV  119 (294)
Q Consensus        54 ~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~--------~~~-----~~~~~~v  119 (294)
                      .++|.++++++++++|+.+|+++|.+++++++||+|+ +|+++|++|.+||++.+..        ...     .....++
T Consensus         7 ~~i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   86 (280)
T 3kh5_A            7 KIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPV   86 (280)
T ss_dssp             GTSCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBG
T ss_pred             HHhcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhH
Confidence            4567779999999999999999999999999999997 7999999999999854311        100     0114589


Q ss_pred             ccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhC
Q 041090          120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG  198 (294)
Q Consensus       120 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  198 (294)
                      +++|.++++++.+++++.++++.|.+++++++||+| +|+++|++|..|+++....                        
T Consensus        87 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~------------------------  142 (280)
T 3kh5_A           87 REIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLD------------------------  142 (280)
T ss_dssp             GGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGG------------------------
T ss_pred             HHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhh------------------------
Confidence            999999999999999999999999999999999999 8999999999999764322                        


Q ss_pred             CCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHH
Q 041090          199 SNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRV  275 (294)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~  275 (294)
                                    ......++.++|.+  ++.++.+++++.++++.|.+++++.+||+++|+++|+||..|+++.+
T Consensus       143 --------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~  203 (280)
T 3kh5_A          143 --------------KIDENEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLL  203 (280)
T ss_dssp             --------------GSCTTCBSGGGCBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             --------------cCCCCCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence                          01122468899977  89999999999999999999999999999999999999999999554

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.95  E-value=6.6e-27  Score=201.60  Aligned_cols=212  Identities=21%  Similarity=0.246  Sum_probs=156.5

Q ss_pred             cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090           49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI  128 (294)
Q Consensus        49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  128 (294)
                      .+.+++++|.++++++++++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++..+.++......+++++|..+++
T Consensus        58 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~~~~  137 (282)
T 2yzq_A           58 DEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVS  137 (282)
T ss_dssp             ------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBSCCC
T ss_pred             ccCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCCCCE
Confidence            46789999999999999999999999999999999999999889999999999997513332222335678999988899


Q ss_pred             EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHH------HHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090          129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCL------YDAISRMEKAAEQGSAIAAAVEGVERQWGSNF  201 (294)
Q Consensus       129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  201 (294)
                      ++++++++.++++.|.+++++.+||++ +|+++|+++..|++      +......  .     .+.   ....+..   .
T Consensus       138 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~--~-----~~~---~~~~~~~---~  204 (282)
T 2yzq_A          138 IVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTE--L-----AAS---SEEEWIL---E  204 (282)
T ss_dssp             CEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC-------------------------------
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccch--h-----hhh---hhhhhhc---c
Confidence            999999999999999999999999999 89999999999998      3221000  0     000   0000000   0


Q ss_pred             CChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090          202 SAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV  275 (294)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~  275 (294)
                      .....+...........++.++|.+  ++.++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+
T Consensus       205 ~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~  277 (282)
T 2yzq_A          205 SHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  277 (282)
T ss_dssp             --------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             cchHHHHhHhhhhhccCCHHHhcCC--CCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHH
Confidence            0011111122233456789999977  999999999999999999999999999999 57999999999999543

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.94  E-value=1.7e-25  Score=196.59  Aligned_cols=190  Identities=16%  Similarity=0.236  Sum_probs=157.0

Q ss_pred             hhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCc-----EEEEEeHHHHHHHHHHcC--CCCcccccccc---
Q 041090           53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANAL-----LSGIVTDKDITTRVIAEG--LRPDQTVVSKI---  122 (294)
Q Consensus        53 v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~-----~~Givt~~di~~~~~~~~--~~~~~~~v~~~---  122 (294)
                      +.++|.++++++++++++.+|++.|.+++++.+||+|+++.     ++|++|.+|+++.+....  ......+++++   
T Consensus       116 ~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~  195 (323)
T 3t4n_C          116 ALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNII  195 (323)
T ss_dssp             HTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCS
T ss_pred             HhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCC
Confidence            44556789999999999999999999999999999998775     999999999987665432  22334588999   


Q ss_pred             cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090          123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNF  201 (294)
Q Consensus       123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  201 (294)
                      |..+++++.+++++.++++.|.+++++++||+| +|+++|++|..|+++.+.....                        
T Consensus       196 m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~------------------------  251 (323)
T 3t4n_C          196 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY------------------------  251 (323)
T ss_dssp             BCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHH------------------------
T ss_pred             CCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchh------------------------
Confidence            888899999999999999999999999999999 8999999999999876433110                        


Q ss_pred             CChhhhHHHHHHhhcccchhhhhhcCC----ceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090          202 SAPYAFIETLRERMFKPSLSTIITENA----KVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV  276 (294)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~v~~im~~~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~  276 (294)
                                  .....++.++|....    +++++.+++++.+|+++|.+++++++||+| +|+++|+||..||++.++
T Consensus       252 ------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~  319 (323)
T 3t4n_C          252 ------------NDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  319 (323)
T ss_dssp             ------------HHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------------hhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence                        012357888886522    689999999999999999999999999999 899999999999997766


Q ss_pred             Hc
Q 041090          277 AQ  278 (294)
Q Consensus       277 ~~  278 (294)
                      ..
T Consensus       320 ~~  321 (323)
T 3t4n_C          320 LG  321 (323)
T ss_dssp             HC
T ss_pred             hc
Confidence            53

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.93  E-value=3.3e-26  Score=197.20  Aligned_cols=176  Identities=20%  Similarity=0.255  Sum_probs=137.9

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  130 (294)
                      ++|+++|.++++++++++|+.+|+++|.+++++.+||+|++|+++|+++.+|++..+       ...+++++|.++++++
T Consensus         1 m~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~~-------~~~~v~~~m~~~~~~v   73 (282)
T 2yzq_A            1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP-------DEEQLAMLVKRDVPVV   73 (282)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCEE
T ss_pred             CchHHhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhhh-------ccCCHHHHcCCCCcEE
Confidence            478999999999999999999999999999999999999889999999999997432       2467899998888999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHH-HHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLY-DAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFI  208 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  208 (294)
                      .+++++.++++.|.+++.+.+||++ +|+++|++|..|+++ .+...                                 
T Consensus        74 ~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~---------------------------------  120 (282)
T 2yzq_A           74 KENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS---------------------------------  120 (282)
T ss_dssp             ETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC---------------------------------
T ss_pred             CCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhcc---------------------------------
Confidence            9999999999999999999999999 789999999999976 32210                                 


Q ss_pred             HHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          209 ETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       209 ~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                          ......++.++|..  +++++.+++++.++++.|.+++++.+||+| +|+++|+||..|++
T Consensus       121 ----~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          121 ----EKYKGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL  179 (282)
T ss_dssp             ----SGGGGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred             ----CCcccCcHHHHhCC--CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence                01123568899966  899999999999999999999999999999 89999999999998

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.93  E-value=1.7e-25  Score=196.62  Aligned_cols=209  Identities=13%  Similarity=0.177  Sum_probs=163.8

Q ss_pred             cccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHH---cCCC------Ccc
Q 041090           49 GERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIA---EGLR------PDQ  116 (294)
Q Consensus        49 ~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~---~~~~------~~~  116 (294)
                      ++.++.|+|.+  ++++++.++|+.+|++.|.+++++.+||+|++ ++++|++|..|++..+..   ....      ...
T Consensus        28 ~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~~~  107 (323)
T 3t4n_C           28 NSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQL  107 (323)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGCBH
T ss_pred             HhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            67889999998  77889999999999999999999999999975 499999999999865432   1100      001


Q ss_pred             ccc------ccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCE-----EEEEEehHHHHHHHHHHHHHHHhhch
Q 041090          117 TVV------SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGE-----VIAILDITKCLYDAISRMEKAAEQGS  184 (294)
Q Consensus       117 ~~v------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~-----~vGivt~~dll~~~~~~~~~~~~~~~  184 (294)
                      ..+      .++|.++++++++++++.++++.|.+++++++||++ ++.     ++|++|..|+++........      
T Consensus       108 ~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~------  181 (323)
T 3t4n_C          108 DGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE------  181 (323)
T ss_dssp             HHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG------
T ss_pred             HHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc------
Confidence            122      234467888999999999999999999999999999 664     99999999998765431100      


Q ss_pred             hHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhh---hhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CC
Q 041090          185 AIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTI---ITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GS  260 (294)
Q Consensus       185 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g  260 (294)
                                                  ......++.++   |.+  ++.++.+++++.+|+++|.+++++++||+| +|
T Consensus       182 ----------------------------~~~~~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~  231 (323)
T 3t4n_C          182 ----------------------------THFLKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG  231 (323)
T ss_dssp             ----------------------------GGGCCSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC
T ss_pred             ----------------------------hhhhhCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCC
Confidence                                        12344678888   866  899999999999999999999999999999 79


Q ss_pred             eEeEeeehhHHHHHHHHccCCCCcceeeecccc
Q 041090          261 KIQGILTSKDVLMRVVAQNLSPELTLVERFIMR  293 (294)
Q Consensus       261 ~~vGivt~~Dil~~~~~~~~~~~~~~v~~~~~~  293 (294)
                      +++|+||.+|+++.+..........+|+++|++
T Consensus       232 ~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~  264 (323)
T 3t4n_C          232 YLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR  264 (323)
T ss_dssp             BEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGG
T ss_pred             eEEEEEeHHHHHHHHhhchhhhccCCHHHHHhh
Confidence            999999999999554332223446688888864

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.92  E-value=1.9e-24  Score=190.77  Aligned_cols=207  Identities=16%  Similarity=0.180  Sum_probs=162.3

Q ss_pred             cccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHc---CCCCc------c
Q 041090           49 GERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAE---GLRPD------Q  116 (294)
Q Consensus        49 ~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~---~~~~~------~  116 (294)
                      ...+|+|+|.+  +++++++++|+.+|++.|.+++++.+||+|++ ++++|+++.+|++..+...   .....      .
T Consensus        20 ~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~   99 (334)
T 2qrd_G           20 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDK   99 (334)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGS
T ss_pred             hcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhh
Confidence            35889999987  57889999999999999999999999999976 8999999999998654321   00110      2


Q ss_pred             ccccc-------ccccCC--eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CC-E----EEEEEehHHHHHHHHHHHHHHHh
Q 041090          117 TVVSK-------IMTRNP--IFVTSDSLAIEALQKMVQGKFRHLPVVE-NG-E----VIAILDITKCLYDAISRMEKAAE  181 (294)
Q Consensus       117 ~~v~~-------~~~~~~--~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-~----~vGivt~~dll~~~~~~~~~~~~  181 (294)
                      .++..       +|..++  +++.+++++.++++.|.+++++++||++ ++ +    ++|++|..|+++.......    
T Consensus       100 ~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~----  175 (334)
T 2qrd_G          100 FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK----  175 (334)
T ss_dssp             CBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG----
T ss_pred             hchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc----
Confidence            22333       345556  8899999999999999999999999998 54 4    9999999999876443100    


Q ss_pred             hchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhh---hhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee
Q 041090          182 QGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLST---IITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT  258 (294)
Q Consensus       182 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~---im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  258 (294)
                                                    .......++.+   +|.+  ++.++.+++++.+|+++|.+++++++||+|
T Consensus       176 ------------------------------~~~~~~~~v~~l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd  223 (334)
T 2qrd_G          176 ------------------------------ETAMLRVPLNQMTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVN  223 (334)
T ss_dssp             ------------------------------GGGGCCCBGGGSSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ------------------------------chhhhhCcHHHhCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEc
Confidence                                          00123456777   4766  899999999999999999999999999999


Q ss_pred             -CCeEeEeeehhHHHHHHHHccC-CCCcceeeeccc
Q 041090          259 -GSKIQGILTSKDVLMRVVAQNL-SPELTLVERFIM  292 (294)
Q Consensus       259 -~g~~vGivt~~Dil~~~~~~~~-~~~~~~v~~~~~  292 (294)
                       +|+++|+||..|+++. +..+. .....++.++|+
T Consensus       224 ~~~~~~Giit~~dl~~~-~~~~~~~~~~~~v~~~m~  258 (334)
T 2qrd_G          224 SEGTLLNVYESVDVMHL-IQDGDYSNLDLSVGEALL  258 (334)
T ss_dssp             TTCBEEEEEETHHHHHH-HTTSCGGGGGSBHHHHHT
T ss_pred             CCCcEEEEEEHHHHHHH-hhccccccccCcHHHHHh
Confidence             7899999999999954 44332 344567888886

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.92  E-value=4e-24  Score=188.47  Aligned_cols=190  Identities=17%  Similarity=0.174  Sum_probs=153.7

Q ss_pred             chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHcCCC-----Ccccccccc--c
Q 041090           52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIAEGLR-----PDQTVVSKI--M  123 (294)
Q Consensus        52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~~~~~-----~~~~~v~~~--~  123 (294)
                      +++++|.++++++.+++++.+|++.|.+++++.+||+|+ +|+++|++|.+|+++++......     ....++.++  |
T Consensus       119 ~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~  198 (330)
T 2v8q_E          119 VYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIG  198 (330)
T ss_dssp             HHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCS
T ss_pred             HHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhccc
Confidence            356788999999999999999999999999999999998 89999999999998666443211     112344454  4


Q ss_pred             c-cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090          124 T-RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNF  201 (294)
Q Consensus       124 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  201 (294)
                      . .+++++.+++++.++++.|.+++++++||++ +|+++|+++..|+++.....                      +.  
T Consensus       199 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~----------------------~~--  254 (330)
T 2v8q_E          199 TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK----------------------TY--  254 (330)
T ss_dssp             BCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSS----------------------CC--
T ss_pred             CcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhcc----------------------cc--
Confidence            3 6788899999999999999999999999999 89999999999997532110                      00  


Q ss_pred             CChhhhHHHHHHhhcccchhhhhhc----CCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090          202 SAPYAFIETLRERMFKPSLSTIITE----NAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV  276 (294)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~v~~im~~----~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~  276 (294)
                                  .....++.++|..    ..++.++.+++++.+|+++|.+++++++||+| +|+++|+||..||++.+.
T Consensus       255 ------------~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~  322 (330)
T 2v8q_E          255 ------------NNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  322 (330)
T ss_dssp             ------------CCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------------ccccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHH
Confidence                        0013467777741    13899999999999999999999999999999 699999999999996554


Q ss_pred             H
Q 041090          277 A  277 (294)
Q Consensus       277 ~  277 (294)
                      .
T Consensus       323 ~  323 (330)
T 2v8q_E          323 L  323 (330)
T ss_dssp             S
T ss_pred             h
Confidence            3

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.92  E-value=3.2e-24  Score=189.15  Aligned_cols=211  Identities=18%  Similarity=0.189  Sum_probs=164.3

Q ss_pred             cccchhccc--cCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcC-------CCCcccc
Q 041090           49 GERTVKKLR--LSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEG-------LRPDQTV  118 (294)
Q Consensus        49 ~~~~v~dl~--~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~-------~~~~~~~  118 (294)
                      .+.+|+|+|  ..+++++++++|+.+|++.|.+++++++||++++ ++++|++|.+|++..+....       .......
T Consensus        33 ~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~  112 (330)
T 2v8q_E           33 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHK  112 (330)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCB
T ss_pred             HcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhcc
Confidence            567999999  6689999999999999999999999999999987 79999999999986543211       0111122


Q ss_pred             -------cccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHH
Q 041090          119 -------VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAA  189 (294)
Q Consensus       119 -------v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~  189 (294)
                             ++++|.++++++++++++.++++.|.+++++++||++  +|+++|++|..|+++.......            
T Consensus       113 ~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~------------  180 (330)
T 2v8q_E          113 IETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFIT------------  180 (330)
T ss_dssp             HHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSC------------
T ss_pred             HHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhh------------
Confidence                   3456788899999999999999999999999999998  6899999999999875432100            


Q ss_pred             HHHHHHhhCCCCCChhhhHHHHHHhhcccchhhh--hhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEee
Q 041090          190 VEGVERQWGSNFSAPYAFIETLRERMFKPSLSTI--ITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGIL  266 (294)
Q Consensus       190 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~i--m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGiv  266 (294)
                              .....           .....++.++  |. ..++.++.+++++.++++.|.+++++++||+| +|+++|+|
T Consensus       181 --------~~~~~-----------~~~~~~v~~~~v~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Gii  240 (330)
T 2v8q_E          181 --------EFPKP-----------EFMSKSLEELQIGT-YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY  240 (330)
T ss_dssp             --------SSSCC-----------GGGGSBHHHHTCSB-CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEE
T ss_pred             --------ccCch-----------hhhcCCHHHhcccC-cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEE
Confidence                    00000           0122345555  43 03789999999999999999999999999999 89999999


Q ss_pred             ehhHHHHHHHHccCCCCcceeeecc
Q 041090          267 TSKDVLMRVVAQNLSPELTLVERFI  291 (294)
Q Consensus       267 t~~Dil~~~~~~~~~~~~~~v~~~~  291 (294)
                      |..|+++.+..........++.++|
T Consensus       241 t~~dl~~~~~~~~~~~~~~~v~~~~  265 (330)
T 2v8q_E          241 SKFDVINLAAEKTYNNLDVSVTKAL  265 (330)
T ss_dssp             EGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             EHHHHHHHHhccccccccCcHHHHH
Confidence            9999995544333444456788887

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.91  E-value=2.5e-23  Score=183.67  Aligned_cols=188  Identities=13%  Similarity=0.199  Sum_probs=153.7

Q ss_pred             ccccCCc--eeecCCCCHHHHHHHHHhCCCCEEEEEcCCC-c----EEEEEeHHHHHHHHHHcCC--CCccccccc---c
Q 041090           55 KLRLSKA--LTIPEGTIVSDACRRMASRRVDAVLLTDANA-L----LSGIVTDKDITTRVIAEGL--RPDQTVVSK---I  122 (294)
Q Consensus        55 dl~~~~~--~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~-~----~~Givt~~di~~~~~~~~~--~~~~~~v~~---~  122 (294)
                      ++|.+++  +++.+++++.+|++.|.+++++.+||+|++| +    ++|++|.+|+++.+.....  .....++++   +
T Consensus       111 ~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~  190 (334)
T 2qrd_G          111 KIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIG  190 (334)
T ss_dssp             HHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCS
T ss_pred             hhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhCCc
Confidence            4566766  9999999999999999999999999999765 4    9999999999866553211  112456778   4


Q ss_pred             cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCC
Q 041090          123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNF  201 (294)
Q Consensus       123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  201 (294)
                      |..+++++.+++++.++++.|.+++++.+||++ +|+++|++|..|+++......                         
T Consensus       191 m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~-------------------------  245 (334)
T 2qrd_G          191 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGD-------------------------  245 (334)
T ss_dssp             BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSC-------------------------
T ss_pred             ccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccc-------------------------
Confidence            788889999999999999999999999999999 889999999999986532200                         


Q ss_pred             CChhhhHHHHHHhhcccchhhhhhcC----CceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090          202 SAPYAFIETLRERMFKPSLSTIITEN----AKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV  276 (294)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~v~~im~~~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~  276 (294)
                                 ......++.++|...    .++.++.+++++.+|+++|.+++++++||+| +|+++|+||..||++.+.
T Consensus       246 -----------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~  314 (334)
T 2qrd_G          246 -----------YSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII  314 (334)
T ss_dssp             -----------GGGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             -----------cccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHH
Confidence                       001235678888621    2789999999999999999999999999999 799999999999996555


Q ss_pred             Hc
Q 041090          277 AQ  278 (294)
Q Consensus       277 ~~  278 (294)
                      ..
T Consensus       315 ~~  316 (334)
T 2qrd_G          315 YD  316 (334)
T ss_dssp             SC
T ss_pred             hc
Confidence            43

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.87  E-value=1.1e-22  Score=162.31  Aligned_cols=128  Identities=18%  Similarity=0.238  Sum_probs=111.5

Q ss_pred             CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC---------------
Q 041090           47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG---------------  111 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~---------------  111 (294)
                      ..++++|+|+|+++++++.+++|+.+|++.|.+++++++||+|++|+++|+||.+|+++......               
T Consensus        14 ~l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T 4esy_A           14 AIRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAP   93 (170)
T ss_dssp             HHHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHH
T ss_pred             HHcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchh
Confidence            34678999999999999999999999999999999999999999999999999999864321100               


Q ss_pred             ------CCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090          112 ------LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       112 ------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~  174 (294)
                            ......+++++|.++++++.+++++.+++++|.+++++++||+++|+++|+||..|+++++..
T Consensus        94 ~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A           94 EVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHTTTSCC
T ss_pred             hHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHHHHHHh
Confidence                  011245789999999999999999999999999999999999999999999999999876543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.86  E-value=1.6e-20  Score=158.58  Aligned_cols=196  Identities=15%  Similarity=0.190  Sum_probs=136.7

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC--------------
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR--------------  113 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~--------------  113 (294)
                      ....+|+|+|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|..|+++.+......              
T Consensus         4 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~   83 (245)
T 3l2b_A            4 MVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNIL   83 (245)
T ss_dssp             CCCCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHH
T ss_pred             cccCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHH
Confidence            346789999999999999999999999999999999999999999999999999998665432110              


Q ss_pred             -------------------------CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHH
Q 041090          114 -------------------------PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKC  168 (294)
Q Consensus       114 -------------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dl  168 (294)
                                               .....+.+.+....+.+-.+  -.++...+.+.++..++++++..+     ..++
T Consensus        84 ~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~-----~~~v  156 (245)
T 3l2b_A           84 DTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTP-----SKEI  156 (245)
T ss_dssp             HHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCC-----CHHH
T ss_pred             HHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCC-----CHHH
Confidence                                     00111222222333333333  256666667777777666542211     1122


Q ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHhhCCC-CCChhhhHHHHHHhhcccchhhhhh-cCCceeEeCCCCcHHHHHHHH
Q 041090          169 LYDAISRMEKAAEQGSAIAAAVEGVERQWGSN-FSAPYAFIETLRERMFKPSLSTIIT-ENAKVAIVSPSDPVAVAAKKM  246 (294)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~m  246 (294)
                      +                      ......+.. +....+.+..........++.++|. +  ++.++.+++++.+|+++|
T Consensus       157 ~----------------------~~a~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~--~~~~~~~~~~~~~~~~~m  212 (245)
T 3l2b_A          157 I----------------------ELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKD--NLVAVSTDDLVEDVKVTM  212 (245)
T ss_dssp             H----------------------HHHHHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCT--TCCCEETTSBHHHHHHHH
T ss_pred             H----------------------HHHHHcCCeEEEeCCChHHHHHHHhcCCceeeEecCC--ccEEECCCCcHHHHHHHH
Confidence            1                      112222222 3344455555556666788999998 5  899999999999999999


Q ss_pred             HHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          247 REFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       247 ~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                      .+++++++||+| +|+++|+||++|+++.
T Consensus       213 ~~~~~~~~pVvd~~~~~~Giit~~dll~~  241 (245)
T 3l2b_A          213 SETRYSNYPVIDENNKVVGSIARFHLIST  241 (245)
T ss_dssp             HHHCCSEEEEECTTCBEEEEEECC-----
T ss_pred             HhcCCceEEEEcCCCeEEEEEEHHHhhch
Confidence            999999999999 7999999999999944

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.85  E-value=1.1e-21  Score=156.51  Aligned_cols=145  Identities=24%  Similarity=0.300  Sum_probs=114.1

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      ..+|+++|.++++++.+++++.+|++.|.+++++.+||+| +|+++|+||..|+++..........             .
T Consensus        17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~-------------~   83 (170)
T 4esy_A           17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEA-------------S   83 (170)
T ss_dssp             TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHH-------------H
T ss_pred             CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccch-------------h
Confidence            5789999999999999999999999999999999999999 8999999999999864322111000             0


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR  274 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~  274 (294)
                      ....  ............+.....++.++|.+  +++++.+++++.+|+++|.+++++++||+|+|+++|+||+.||++.
T Consensus        84 ~~~~--~~~~~~~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil~~  159 (170)
T 4esy_A           84 EILS--RAIPAPEVEHLFETGRKLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLLKL  159 (170)
T ss_dssp             HHHT--TTSCHHHHHHHHHHHTTCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHTTT
T ss_pred             hhhh--hccchhhHHhhhccccccchhhhccc--CcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHHHH
Confidence            0000  00111122233344456789999977  9999999999999999999999999999999999999999999965


Q ss_pred             HHH
Q 041090          275 VVA  277 (294)
Q Consensus       275 ~~~  277 (294)
                      ++.
T Consensus       160 l~~  162 (170)
T 4esy_A          160 LLL  162 (170)
T ss_dssp             SCC
T ss_pred             HHh
Confidence            543

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.85  E-value=2e-20  Score=145.66  Aligned_cols=123  Identities=17%  Similarity=0.264  Sum_probs=112.4

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      .+...+|+|+|.+  +++++++++++.+|++.|.+++++.+||+|++ |+++|++|.+|+++.+....    ..+++++|
T Consensus        19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m   94 (148)
T 3lv9_A           19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN----KIELEEIL   94 (148)
T ss_dssp             GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----CCCGGGTC
T ss_pred             ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC----CccHHHhc
Confidence            5678999999999  99999999999999999999999999999987 89999999999986654433    56899999


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                       ++++++++++++.++++.|.+++++.+||+| +|+++|+||..|+++.+..
T Consensus        95 -~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           95 -RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             -BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred             -CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence             8889999999999999999999999999999 7999999999999987664

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=4e-20  Score=146.70  Aligned_cols=128  Identities=29%  Similarity=0.448  Sum_probs=115.5

Q ss_pred             CCcccchhccccC---CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRLS---KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~~---~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      ....++|+|+|.+   +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.+..........++.++|
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   99 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAM   99 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTS
T ss_pred             hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHHh
Confidence            4577999999996   7999999999999999999999999999999999999999999987766554334467899999


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~  174 (294)
                      .++++++.+++++.++++.|.+++++++||+++|+++|+||..|+++++..
T Consensus       100 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A          100 TKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             BSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHTTC
T ss_pred             cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987554

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.83  E-value=3.2e-20  Score=141.47  Aligned_cols=123  Identities=11%  Similarity=0.140  Sum_probs=107.6

Q ss_pred             ccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090           50 ERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN  126 (294)
Q Consensus        50 ~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  126 (294)
                      +++|+|+|++  +++++++++++.+|++.|.+++++.+||+++ +|+++|++|.+|+++.+ .++......++.++| ++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~-~~~~~~~~~~v~~~m-~~   78 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM-TEKKEFTKEIMLRAA-DE   78 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHH-TSSSCCCHHHHHHHS-BC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHH-hccCccchhhHHHhc-cC
Confidence            3689999975  7899999999999999999999999999975 58999999999997544 343334456789998 67


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      ++++++++++.++++.|.+++++.+||+| +|+++|++|..|+++.+..
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           79 IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             CCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence            88999999999999999999999999999 8999999999999987654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.83  E-value=1.6e-19  Score=138.68  Aligned_cols=126  Identities=28%  Similarity=0.423  Sum_probs=112.8

Q ss_pred             CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090           47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN  126 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  126 (294)
                      .+...+|+++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.++.++. ....++.++|.++
T Consensus         3 ~l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~~~   81 (138)
T 2yzi_A            3 MDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTRN   81 (138)
T ss_dssp             CCTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBCS
T ss_pred             chhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-cccCCHHHHhhCC
Confidence            456789999999999999999999999999999999999999988999999999999755544443 3367899999999


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      ++++.+++++.++++.|.+++++++ |++ +|+++|++|..|+++.+..
T Consensus        82 ~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           82 LITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred             CeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999 999 9999999999999876543

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.83  E-value=6.7e-20  Score=144.15  Aligned_cols=123  Identities=16%  Similarity=0.178  Sum_probs=108.0

Q ss_pred             ccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC---Ccccccccccc
Q 041090           50 ERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR---PDQTVVSKIMT  124 (294)
Q Consensus        50 ~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~---~~~~~v~~~~~  124 (294)
                      ..+++++|++  +++++.+++|+.+|+++|.+++++++||+|++|+++|++|.+|+++++......   ....+++++|.
T Consensus        14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~   93 (156)
T 3k6e_A           14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTK   93 (156)
T ss_dssp             HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCB
T ss_pred             hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhc
Confidence            3578899986  899999999999999999999999999999999999999999998776655432   23568999999


Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      ++++++++++++.++++.|.+++  .+||+| +|+++|+||..|+++++..
T Consensus        94 ~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A           94 TDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             CSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHH
Confidence            99999999999999999998765  489999 8999999999999987654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.83  E-value=1.2e-19  Score=145.10  Aligned_cols=123  Identities=16%  Similarity=0.239  Sum_probs=107.8

Q ss_pred             CCcccchhcccc--CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRL--SKALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~--~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      .+...+|+++|.  .+++++++++++.+|++.|.+++++.+||+|++ ++++|++|.+|+++... ++   ...+++++|
T Consensus        38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~-~~---~~~~v~~im  113 (172)
T 3lhh_A           38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI-AG---ERLELVDLV  113 (172)
T ss_dssp             -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHH-TT---CCCCGGGGC
T ss_pred             ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHh-hc---CcccHHHHh
Confidence            578899999999  688999999999999999999999999999987 99999999999986543 22   156899999


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                       ++++++.+++++.++++.|.+++++.+||+| +|+++|+||..|+++.+..
T Consensus       114 -~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          114 -KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             -BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             -cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence             8999999999999999999999999999999 7999999999999987665

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.83  E-value=1.1e-19  Score=139.12  Aligned_cols=123  Identities=30%  Similarity=0.464  Sum_probs=111.8

Q ss_pred             cchhcccc---CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090           51 RTVKKLRL---SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP  127 (294)
Q Consensus        51 ~~v~dl~~---~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  127 (294)
                      .+|+++|.   ++++++++++++.+|++.|.+++++.+||+| +|+++|++|.+|+++.+..++......++.++|.+++
T Consensus         6 ~~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~   84 (135)
T 2rc3_A            6 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQV   84 (135)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSC
T ss_pred             eeHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCC
Confidence            38999999   8999999999999999999999999999999 8999999999999765655554455788999999999


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~  174 (294)
                      +++.+++++.++++.|.+++++.+||+|+|+++|++|..|+++++..
T Consensus        85 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           85 AYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             CCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC
T ss_pred             eEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999999998999999999999987544

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.83  E-value=1.4e-19  Score=140.96  Aligned_cols=138  Identities=17%  Similarity=0.331  Sum_probs=110.3

Q ss_pred             EEEeHHHHHHHHHHcCCCCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHH
Q 041090           96 GIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYD  171 (294)
Q Consensus        96 Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~  171 (294)
                      |.++..+  +.++.........+++++|.+  +++++++++++.++++.|.+++++++||++ + |+++|++|..|+++.
T Consensus         4 g~l~~~e--~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~   81 (148)
T 3lv9_A            4 GLIDESE--QRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQ   81 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHH
T ss_pred             CccCHHH--HHHHHHHhccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            4555444  233444455667899999998  899999999999999999999999999999 5 899999999999875


Q ss_pred             HHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCC
Q 041090          172 AISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRS  251 (294)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~  251 (294)
                      ....                                        ...++.++| +  ++.++.+++++.+|+++|.++++
T Consensus        82 ~~~~----------------------------------------~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~  118 (148)
T 3lv9_A           82 KINE----------------------------------------NKIELEEIL-R--DIIYISENLTIDKALERIRKEKL  118 (148)
T ss_dssp             HHHH----------------------------------------SCCCGGGTC-B--CCEEEETTSBHHHHHHHHHHHTC
T ss_pred             HhcC----------------------------------------CCccHHHhc-C--CCeEECCCCCHHHHHHHHHhcCC
Confidence            4331                                        146789999 6  79999999999999999999999


Q ss_pred             ceeEEee-CCeEeEeeehhHHHHHHHHc
Q 041090          252 NSALIVT-GSKIQGILTSKDVLMRVVAQ  278 (294)
Q Consensus       252 ~~lpVvd-~g~~vGivt~~Dil~~~~~~  278 (294)
                      +.+||+| +|+++|+||+.|+++.++.+
T Consensus       119 ~~l~Vvd~~g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A          119 QLAIVVDEYGGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             SEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence            9999999 69999999999999777653

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.83  E-value=1.1e-19  Score=136.52  Aligned_cols=118  Identities=21%  Similarity=0.261  Sum_probs=107.3

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  130 (294)
                      .+|+++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+++.+.. +    ..+++++|.++++++
T Consensus         1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~-~----~~~v~~~~~~~~~~v   75 (122)
T 3kpb_A            1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ-N----KKTIEEIMTRNVITA   75 (122)
T ss_dssp             CBHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT-T----CCBGGGTSBSSCCCE
T ss_pred             CchHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh-c----ccCHHHHhcCCCeEE
Confidence            46899999999999999999999999999999999999999999999999999755432 2    238999999999999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                      .+++++.++++.|.+++.+++||+| +|+++|++|..|+++++.
T Consensus        76 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           76 HEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             ETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence            9999999999999999999999999 699999999999988654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.83  E-value=1.5e-19  Score=136.35  Aligned_cols=122  Identities=24%  Similarity=0.303  Sum_probs=109.1

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  130 (294)
                      ++|+++|.++++++++++++.+|++.|.+++++.+||+| +|+++|+++.+|+++. +.++......++.++|.+++.++
T Consensus         1 m~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~-~~~~~~~~~~~v~~~m~~~~~~v   78 (125)
T 1pbj_A            1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEA-IAEGDDLAEVKVWEVMERDLVTI   78 (125)
T ss_dssp             -CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHH-HHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             CCHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHH-HhcCCcccccCHHHHcCCCCeEE
Confidence            478999999999999999999999999999999999999 8999999999999744 44444444678999999899999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~  174 (294)
                      .+++++.++++.|.+++++++||+++|+++|++|..|+++.+..
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           79 SPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMA  122 (125)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHHHh
Confidence            99999999999999999999999998999999999999886543

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.82  E-value=2.4e-19  Score=141.52  Aligned_cols=128  Identities=21%  Similarity=0.198  Sum_probs=112.4

Q ss_pred             cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHc-------CCCCccccccc
Q 041090           49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAE-------GLRPDQTVVSK  121 (294)
Q Consensus        49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~-------~~~~~~~~v~~  121 (294)
                      ..++|+++|.++++++.+++|+.+|++.|.+++++.+||+|++|+++|+||.+||++.+...       .......++.+
T Consensus         3 ~~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~   82 (160)
T 2o16_A            3 LMIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE   82 (160)
T ss_dssp             CCCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH
T ss_pred             CcCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHH
Confidence            45789999999999999999999999999999999999999889999999999998665431       11223568999


Q ss_pred             ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHH
Q 041090          122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRM  176 (294)
Q Consensus       122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~  176 (294)
                      +|.++++++.+++++.++++.|.+.+++.+||+++|+++|+||..|+++.+....
T Consensus        83 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A           83 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred             HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHHHh
Confidence            9998999999999999999999999999999999999999999999998766543

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.82  E-value=3.5e-20  Score=141.49  Aligned_cols=124  Identities=19%  Similarity=0.329  Sum_probs=110.6

Q ss_pred             cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090           49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI  128 (294)
Q Consensus        49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  128 (294)
                      +..+|+++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.++.++......+++++|.++++
T Consensus         6 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~   85 (133)
T 1y5h_A            6 TMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY   85 (133)
T ss_dssp             --CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred             hhcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCCE
Confidence            45699999999999999999999999999999999999998889999999999997445545444446789999998999


Q ss_pred             EEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHH
Q 041090          129 FVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA  172 (294)
Q Consensus       129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~  172 (294)
                      ++++++++.++++.|.+++.+++||+++|+++|++|..|+++++
T Consensus        86 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           86 YVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL  129 (133)
T ss_dssp             CEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTC
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence            99999999999999999999999999988999999999998754

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.82  E-value=8.3e-20  Score=138.89  Aligned_cols=121  Identities=12%  Similarity=0.193  Sum_probs=105.8

Q ss_pred             Ccccchhcccc--CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccc
Q 041090           48 GGERTVKKLRL--SKALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT  124 (294)
Q Consensus        48 ~~~~~v~dl~~--~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  124 (294)
                      +.+.+|+|+|.  ++++++++++++.+|++.|.+++++.+||+|++ |+++|++|.+|+++.+.     ....+++++|.
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~-----~~~~~v~~~m~   76 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML-----EPALDIRSLVR   76 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----CTTSCGGGGCB
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----cCCcCHHHHhC
Confidence            46789999999  678999999999999999999999999999985 89999999999975432     12567899985


Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                       +++++.+++++.++++.|.+++++.+||+| +|+++|++|..|+++.+..
T Consensus        77 -~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           77 -PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             -CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred             -CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence             578999999999999999999999999999 7999999999999987664

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.82  E-value=5.1e-20  Score=140.24  Aligned_cols=123  Identities=11%  Similarity=0.200  Sum_probs=105.0

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      .+.+.+|+|+|.+  +++++++++++.+|++.|.+++++.+||+|++ |+++|++|.+|+++.+.. +.  ...+++++|
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~-~~--~~~~v~~~m   78 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS-GS--GQKQLGAVM   78 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT-TT--TTSBHHHHS
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc-CC--CcCCHHHHh
Confidence            4577899999995  56789999999999999999999999999987 899999999999855433 22  256899999


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                       .+++++.+++++.++++.|.+++++.+||+| +|+++|++|..|+++.+.
T Consensus        79 -~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           79 -RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             -EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             -cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence             4678999999999999999999999999999 799999999999998754

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.82  E-value=3e-20  Score=140.91  Aligned_cols=120  Identities=12%  Similarity=0.247  Sum_probs=105.0

Q ss_pred             ccchhccccCC--ceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090           50 ERTVKKLRLSK--ALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN  126 (294)
Q Consensus        50 ~~~v~dl~~~~--~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  126 (294)
                      +.+|+|+|.+.  ++++++++++.+|++.|.+++++.+||+|++ |+++|++|.+|+++.+.. .  ....+++++|.+ 
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-~--~~~~~v~~~m~~-   77 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-D--AEAFSMDKVLRT-   77 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-T--CCCCCHHHHCBC-
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-c--CCCCCHHHHcCC-
Confidence            57899999965  9999999999999999999999999999987 899999999999754322 1  235689999954 


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                      ++++++++++.++++.|.+++++.+||+| +|+++|++|..|+++.+.
T Consensus        78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           78 AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC-
T ss_pred             CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            77899999999999999999999999999 899999999999998654

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.82  E-value=2.8e-19  Score=136.47  Aligned_cols=124  Identities=27%  Similarity=0.395  Sum_probs=110.9

Q ss_pred             cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090           49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI  128 (294)
Q Consensus        49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  128 (294)
                      .+.+|+++|.++++++.+++++.+|++.|.+++++.+||+| +|+++|++|.+|+++. +.++... ..++.++|.+++.
T Consensus         2 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~-~~~~~~~-~~~v~~~~~~~~~   78 (133)
T 2ef7_A            2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKA-IGKGKSL-ETKAEEFMTASLI   78 (133)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH-HHTTCCT-TCBGGGTSEECCC
T ss_pred             CcccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHH-HhcCCCc-ccCHHHHcCCCCE
Confidence            45789999999999999999999999999999999999999 8999999999999744 4443332 5789999988999


Q ss_pred             EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090          129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR  175 (294)
Q Consensus       129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~  175 (294)
                      ++++++++.++++.|.+++.+++||++ +|+++|++|..|+++.+...
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  126 (133)
T 2ef7_A           79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (133)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence            999999999999999999999999999 89999999999999876653

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.82  E-value=7e-20  Score=143.50  Aligned_cols=124  Identities=13%  Similarity=0.196  Sum_probs=110.7

Q ss_pred             CcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEE-cC-CCcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           48 GGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLT-DA-NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        48 ~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~-d~-~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      +...+|+++|.+  +++++++++++.+|++.|.+++++.+||+ ++ +|+++|++|.+|+++.+....    ..+++++|
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m   92 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD----KAKISTIM   92 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT----TSBGGGTC
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC----CCcHHHHh
Confidence            467899999997  89999999999999999999999999999 65 489999999999986655432    56899999


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRM  176 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~  176 (294)
                       ++++++.+++++.++++.|.+++++.+||++ +|+++|+||..|+++.+...+
T Consensus        93 -~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~  145 (153)
T 3oco_A           93 -RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNL  145 (153)
T ss_dssp             -BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC--
T ss_pred             -CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccC
Confidence             8999999999999999999999999999999 799999999999999877643

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.82  E-value=1.9e-19  Score=140.27  Aligned_cols=121  Identities=18%  Similarity=0.294  Sum_probs=109.4

Q ss_pred             cccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090           49 GERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN  126 (294)
Q Consensus        49 ~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  126 (294)
                      ..++|+|+|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++ .+.++......+++++|.++
T Consensus        26 l~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~-~~~~~~~~~~~~v~~~m~~~  104 (149)
T 3k2v_A           26 LLLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRR-VFDTGVDMRDASIADVMTRG  104 (149)
T ss_dssp             TTSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHH-HHCSSSCCTTCBHHHHSEES
T ss_pred             cccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHH-HHhcCCCcccCcHHHHcCCC
Confidence            34699999999  9999999999999999999999999999999999999999999974 44444444578999999999


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLY  170 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~  170 (294)
                      ++++.+++++.++++.|.+++++.+||+|+++++|+||..|+++
T Consensus       105 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil~  148 (149)
T 3k2v_A          105 GIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLLR  148 (149)
T ss_dssp             CCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHTC
T ss_pred             CeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhhc
Confidence            99999999999999999999999999999669999999999864

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.82  E-value=4e-20  Score=141.99  Aligned_cols=123  Identities=14%  Similarity=0.203  Sum_probs=106.1

Q ss_pred             ccchhcccc--CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090           50 ERTVKKLRL--SKALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN  126 (294)
Q Consensus        50 ~~~v~dl~~--~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  126 (294)
                      +.+|+++|.  ++++++.+++|+.+|++.|.+++++.+||++++ |+++|++|.+|+++.+. ++ .....+++++|.+ 
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~-~~-~~~~~~v~~~m~~-   78 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL-KA-DGDSDDVKKLLRP-   78 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGG-SS-SGGGCCGGGTCBC-
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH-hc-cCCCcCHHHHcCC-
Confidence            578999999  578999999999999999999999999999987 89999999999975432 22 2236689999965 


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR  175 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~  175 (294)
                      ++++.+++++.++++.|.+++++.+||+| +|+++|+||..|+++.+...
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~  128 (136)
T 3lfr_A           79 ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGD  128 (136)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC---
T ss_pred             CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence            88999999999999999999999999999 89999999999999876653

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.81  E-value=4.5e-19  Score=139.76  Aligned_cols=127  Identities=24%  Similarity=0.301  Sum_probs=112.3

Q ss_pred             CCCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc
Q 041090           46 GAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR  125 (294)
Q Consensus        46 ~~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~  125 (294)
                      .....++|+++|.+ ++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.++ .+......++.++|.+
T Consensus        12 ~~l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~-~~~~~~~~~v~~~m~~   89 (159)
T 3fv6_A           12 DKLKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASI-GQQELTSVPVHIIMTR   89 (159)
T ss_dssp             HHHTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHT-SCSCTTTCBGGGTSEE
T ss_pred             HHHhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhh-ccCcccCcCHHHHHcC
Confidence            34567899999997 459999999999999999999999999999999999999999975543 3334446789999988


Q ss_pred             --CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CC---EEEEEEehHHHHHHHHH
Q 041090          126 --NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NG---EVIAILDITKCLYDAIS  174 (294)
Q Consensus       126 --~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~---~~vGivt~~dll~~~~~  174 (294)
                        +++++.+++++.++++.|.+++++++||++ +|   +++|+||..|+++++.+
T Consensus        90 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           90 MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             TTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence              889999999999999999999999999999 77   99999999999987665

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.81  E-value=1.2e-19  Score=137.71  Aligned_cols=122  Identities=13%  Similarity=0.102  Sum_probs=108.5

Q ss_pred             cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090           49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI  128 (294)
Q Consensus        49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  128 (294)
                      ..++++++|.++++++.+++++.+|++.|.+++++.+||+|+ |+++|++|.+|+++.+ .++. ....+++++|.+++.
T Consensus         3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~-~~~~-~~~~~v~~~m~~~~~   79 (128)
T 3gby_A            3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGR-KGWP-TVKEKLGEELLETVR   79 (128)
T ss_dssp             TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTC-SSSC-CTTCBCCGGGCBCCC
T ss_pred             cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHH-hhCC-cccCcHHHHccCCCc
Confidence            468899999999999999999999999999999999999998 9999999999997432 2221 123679999999999


Q ss_pred             EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                      ++.+++++.++++.|.+++++++||+| +|+++|++|..|+++.+.
T Consensus        80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            999999999999999999999999998 899999999999988654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.81  E-value=3.6e-19  Score=147.19  Aligned_cols=158  Identities=16%  Similarity=0.176  Sum_probs=106.2

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  130 (294)
                      .+++++|.++++++.+++|+.+|+++|.+++++.+||+|++++++|++|.+|+++.       ....+++++|.++++++
T Consensus        13 ~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~-------~~~~~v~~im~~~~~~v   85 (213)
T 1vr9_A           13 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-------DLDSSVFNKVSLPDFFV   85 (213)
T ss_dssp             CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS-------CTTSBSGGGCBCTTCCE
T ss_pred             cCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhh-------cCCCcHHHHccCCCEEE
Confidence            46799999999999999999999999999999999999988999999999999632       12468999999999999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIE  209 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  209 (294)
                      .+++++.++++.|.+++++++||+| +|+++|++|..|+++.....                                  
T Consensus        86 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~----------------------------------  131 (213)
T 1vr9_A           86 HEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA----------------------------------  131 (213)
T ss_dssp             ETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS----------------------------------
T ss_pred             CCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH----------------------------------
Confidence            9999999999999999999999999 69999999999998754321                                  


Q ss_pred             HHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee
Q 041090          210 TLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT  258 (294)
Q Consensus       210 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  258 (294)
                              ....+.+.+ -.+.+.....++.++.+.|.+++++.++|++
T Consensus       132 --------~~~~~~~~~-l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~  171 (213)
T 1vr9_A          132 --------LAMDVPGIR-FSVLLEDKPGELRKVVDALALSNINILSVIT  171 (213)
T ss_dssp             --------CC---------------------------------------
T ss_pred             --------hcCCCCcEE-EEEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence                    011122211 0111113344599999999999999999876

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.81  E-value=5.1e-19  Score=136.49  Aligned_cols=122  Identities=23%  Similarity=0.341  Sum_probs=109.0

Q ss_pred             ccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCC--cEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090           50 ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANA--LLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP  127 (294)
Q Consensus        50 ~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~--~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  127 (294)
                      .++|+++|.++++++.+++++.+|++.|.+++++.+||+|+++  +++|++|.+|+++.+ .++... ..++.++|.+++
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~-~~~~~~-~~~v~~~m~~~~   81 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV-AQRLDL-DGPAMPIANSPI   81 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHH-HTTCCT-TSBSGGGCBCCC
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHH-hcCCCC-CCCHHHHcCCCC
Confidence            3689999999999999999999999999999999999999888  999999999997544 343333 578999999999


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      +++.++ ++.++++.|.+++++++||+| +|+++|++|..|+++....
T Consensus        82 ~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           82 TVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             EEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             eEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence            999999 999999999999999999999 8999999999999876543

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.81  E-value=5.5e-19  Score=138.91  Aligned_cols=128  Identities=23%  Similarity=0.271  Sum_probs=113.4

Q ss_pred             CCCCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCE-EEEEcCCCcEEEEEeHHHHHHHHHHc-------------
Q 041090           45 GGAGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDA-VLLTDANALLSGIVTDKDITTRVIAE-------------  110 (294)
Q Consensus        45 ~~~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~-lpV~d~~~~~~Givt~~di~~~~~~~-------------  110 (294)
                      ++.+...+|+++|.++++++.+++|+.+|++.|.+++++. +||+|++ +++|++|.+|+++.+...             
T Consensus        10 ~~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~   88 (157)
T 1o50_A           10 HHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRS   88 (157)
T ss_dssp             CTTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------
T ss_pred             hhhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHH
Confidence            4578899999999999999999999999999999999999 9999987 999999999998654321             


Q ss_pred             -CCCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          111 -GLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       111 -~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                       .......++.++|.+ ++++.+++++.++++.|.+++++++||+| +|+++|+||..|+++.+.+
T Consensus        89 ~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           89 SMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence             122346789999998 99999999999999999999999999999 8999999999999986543

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.80  E-value=5.9e-19  Score=140.97  Aligned_cols=140  Identities=16%  Similarity=0.312  Sum_probs=105.5

Q ss_pred             EEEEEeHHHHHHHHHHcCCCCcccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHH
Q 041090           94 LSGIVTDKDITTRVIAEGLRPDQTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCL  169 (294)
Q Consensus        94 ~~Givt~~di~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll  169 (294)
                      -.|+++..+-  .++.+...+...+++++|.  .+++++++++++.++++.|.+++++++||++ + ++++|+++..|++
T Consensus        21 ~~g~l~~~e~--~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~   98 (172)
T 3lhh_A           21 SAGVIEHNEH--AMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLL   98 (172)
T ss_dssp             ------------------------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHH
T ss_pred             HcCCCCHHHH--HHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHH
Confidence            3466655442  3333334566789999998  6788999999999999999999999999999 5 8999999999998


Q ss_pred             HHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHh
Q 041090          170 YDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREF  249 (294)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~  249 (294)
                      .....                                        -...++.++| +  +++++.+++++.+|+++|.++
T Consensus        99 ~~~~~----------------------------------------~~~~~v~~im-~--~~~~v~~~~~l~~a~~~m~~~  135 (172)
T 3lhh_A           99 SESIA----------------------------------------GERLELVDLV-K--NCNFVPNSLSGMELLEHFRTT  135 (172)
T ss_dssp             HHHHT----------------------------------------TCCCCGGGGC-B--CCEEEETTCCHHHHHHHHHHH
T ss_pred             HHHhh----------------------------------------cCcccHHHHh-c--CCeEeCCCCCHHHHHHHHHHc
Confidence            65322                                        0136789999 7  899999999999999999999


Q ss_pred             CCceeEEee-CCeEeEeeehhHHHHHHHHc
Q 041090          250 RSNSALIVT-GSKIQGILTSKDVLMRVVAQ  278 (294)
Q Consensus       250 ~~~~lpVvd-~g~~vGivt~~Dil~~~~~~  278 (294)
                      +++.+||+| +|+++|+||+.||++.++..
T Consensus       136 ~~~~~pVvd~~g~lvGiit~~Dil~~l~~~  165 (172)
T 3lhh_A          136 GSQMVFVVDEYGDLKGLVTLQDMMDALTGE  165 (172)
T ss_dssp             TCSEEEEECTTSCEEEEEEHHHHHHHHHTT
T ss_pred             CCeEEEEEeCCCCEEEEeeHHHHHHHHhCC
Confidence            999999999 69999999999999776654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.80  E-value=3e-19  Score=139.15  Aligned_cols=127  Identities=22%  Similarity=0.364  Sum_probs=109.1

Q ss_pred             CcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHc------------CCC
Q 041090           48 GGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAE------------GLR  113 (294)
Q Consensus        48 ~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~------------~~~  113 (294)
                      ++.++|+++|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+...            ...
T Consensus         2 ~~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~   81 (152)
T 4gqw_A            2 SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSK   81 (152)
T ss_dssp             -CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC---
T ss_pred             CceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHH
Confidence            356899999999  899999999999999999999999999999999999999999996321100            012


Q ss_pred             CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      ....++.++|.++++++.+++++.++++.|.+++++++||++ +|+++|+||..|+++.+..
T Consensus        82 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           82 TNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             --CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             hccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            235689999999899999999999999999999999999999 8999999999999987655

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.80  E-value=8.4e-19  Score=134.56  Aligned_cols=124  Identities=23%  Similarity=0.322  Sum_probs=109.9

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH-HHHHHHcCCCCcccccccccccC
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI-TTRVIAEGLRPDQTVVSKIMTRN  126 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di-~~~~~~~~~~~~~~~v~~~~~~~  126 (294)
                      ....+|+++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+ ++.+ ..+ .....++.++|.++
T Consensus         5 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~-~~~-~~~~~~v~~~m~~~   82 (138)
T 2p9m_A            5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLI-RDK-YTLETTIGDVMTKD   82 (138)
T ss_dssp             CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHT-TTC-CCSSCBHHHHSCSS
T ss_pred             cccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHH-hhc-ccCCcCHHHHhCCC
Confidence            35789999999999999999999999999999999999999988999999999999 7543 222 22367899999989


Q ss_pred             CeEEcCCCcHHHHHHHHHhCC-----CcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGK-----FRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~-----~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                      ++++.+++++.++++.|.+++     ++.+||++ +|+++|++|..|+++.+.
T Consensus        83 ~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           83 VITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             CCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             cEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            999999999999999999999     99999999 899999999999987654

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.80  E-value=5.3e-19  Score=138.93  Aligned_cols=124  Identities=27%  Similarity=0.455  Sum_probs=110.9

Q ss_pred             ccchhcccc------CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           50 ERTVKKLRL------SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        50 ~~~v~dl~~------~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      ..+|+|+|.      ++++++.+++++.+|++.|.+++++.+||.+ +|+++|++|.+|+++.+..........+++++|
T Consensus         6 ~~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   84 (157)
T 4fry_A            6 STTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERSSKATRVEEIM   84 (157)
T ss_dssp             -CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHS
T ss_pred             HHHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCCccccCHHHHc
Confidence            467999999      5569999999999999999999999999965 899999999999987666555554578999999


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~  174 (294)
                      .++++++.+++++.++++.|.+++++++||+|+|+++|+++..|+++++..
T Consensus        85 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           85 TAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHT
T ss_pred             CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987654

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.80  E-value=5.3e-19  Score=137.81  Aligned_cols=127  Identities=18%  Similarity=0.178  Sum_probs=110.5

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC----CCCcccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG----LRPDQTVVS  120 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~----~~~~~~~v~  120 (294)
                      ....++|+++|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+||++.+....    ......++.
T Consensus        11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~   90 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVE   90 (150)
T ss_dssp             HHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGG
T ss_pred             hhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHH
Confidence            4567899999995  6999999999999999999999999999999999999999999975543211    112356899


Q ss_pred             cccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090          121 KIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR  175 (294)
Q Consensus       121 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~  175 (294)
                      ++|.++++++.+++++.++++.|.++++  +||++ +|+++|+||..|+++.+...
T Consensus        91 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~  144 (150)
T 3lqn_A           91 QVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKK  144 (150)
T ss_dssp             GTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999998886  99999 89999999999999877654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.79  E-value=1.2e-18  Score=134.52  Aligned_cols=127  Identities=14%  Similarity=0.154  Sum_probs=107.3

Q ss_pred             Ccccchhc---cccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc
Q 041090           48 GGERTVKK---LRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT  124 (294)
Q Consensus        48 ~~~~~v~d---l~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  124 (294)
                      ..+.++++   +|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+++.+..........++.++|.
T Consensus         5 ~~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   84 (144)
T 2nyc_A            5 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM   84 (144)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHH
T ss_pred             hhhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHHHh
Confidence            34567788   888999999999999999999999999999999988999999999999765443211233568999887


Q ss_pred             c------CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          125 R------NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       125 ~------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      +      +++++.+++++.++++.|.+++++++||+| +|+++|++|..|+++.+..
T Consensus        85 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           85 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             HCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             cCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            5      678999999999999999999999999999 8999999999999987643

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.79  E-value=3.1e-19  Score=143.22  Aligned_cols=126  Identities=27%  Similarity=0.388  Sum_probs=109.8

Q ss_pred             ccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC----------------
Q 041090           50 ERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG----------------  111 (294)
Q Consensus        50 ~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~----------------  111 (294)
                      .++|+|+|.+  +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++.....+                
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CC
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            5789999999  8999999999999999999999999999999999999999999963221111                


Q ss_pred             ----------CCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090          112 ----------LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR  175 (294)
Q Consensus       112 ----------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~  175 (294)
                                ......+++++|.++++++.+++++.++++.|.+++++++||++ +|+++|+||..|+++.+...
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~  157 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI  157 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence                      01235689999999899999999999999999999999999999 89999999999999987664

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.79  E-value=1.1e-18  Score=141.02  Aligned_cols=124  Identities=22%  Similarity=0.269  Sum_probs=111.4

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  130 (294)
                      ++|+++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|.+||++.+..........+++++|.++++++
T Consensus         9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v   88 (184)
T 1pvm_A            9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKV   88 (184)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCEE
T ss_pred             cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCCcEE
Confidence            78999999999999999999999999999999999999988999999999999865543333344678999999899999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      .+++++.++++.|.+++++.+||+| +|+++|+||..|+++++..
T Consensus        89 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           89 KSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             ETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             CCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            9999999999999999999999999 6999999999999876543

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.79  E-value=2.7e-18  Score=135.64  Aligned_cols=128  Identities=16%  Similarity=0.189  Sum_probs=109.2

Q ss_pred             CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHHcCC---CCccccccc
Q 041090           47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA--NALLSGIVTDKDITTRVIAEGL---RPDQTVVSK  121 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~--~~~~~Givt~~di~~~~~~~~~---~~~~~~v~~  121 (294)
                      .....+|+|+|.++++++.+++++.+|++.|.+++++.+||+|+  +|+++|++|..|+++.+.....   .....++.+
T Consensus         9 ~~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~   88 (164)
T 2pfi_A            9 GSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQD   88 (164)
T ss_dssp             -CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHH
T ss_pred             cccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhh
Confidence            34578899999999999999999999999999999999999996  7999999999999754432211   112457888


Q ss_pred             ccccC------CeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090          122 IMTRN------PIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       122 ~~~~~------~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~  174 (294)
                      +|...      ++++.+++++.++++.|.+++++++||+++|+++|+||..|+++.+..
T Consensus        89 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           89 ILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             HHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             hhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHh
Confidence            88766      788999999999999999999999999999999999999999987654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.78  E-value=4.4e-18  Score=139.72  Aligned_cols=121  Identities=16%  Similarity=0.231  Sum_probs=110.3

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhC---CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASR---RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT  124 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~---~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  124 (294)
                      +.+.+|+++|+++++++++++|+.+|++.|.++   +++.+||+|++|+++|++|.+|++.       .....+++++|.
T Consensus        51 ~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~-------~~~~~~v~~im~  123 (205)
T 3kxr_A           51 YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFK-------HEPHEPLISLLS  123 (205)
T ss_dssp             SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTT-------SCTTSBGGGGCC
T ss_pred             CCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHh-------CCCcchHHHHhc
Confidence            567789999999999999999999999999987   8899999999999999999999963       123578999999


Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR  175 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~  175 (294)
                      ++++++++++++.++++.|.+++++.+||+| +|+++|+||..|++..+...
T Consensus       124 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          124 EDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREH  175 (205)
T ss_dssp             SSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             CCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence            8999999999999999999999999999999 89999999999999876553

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.78  E-value=1.9e-18  Score=138.12  Aligned_cols=122  Identities=12%  Similarity=0.174  Sum_probs=107.3

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDAN-ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~-~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      .+...+|+++|++  +++++++++++.+|++.|.+++++.+||++++ |+++|+||.+||++.+....    ..++. + 
T Consensus        32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~----~~~v~-~-  105 (173)
T 3ocm_A           32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG----RVRRN-R-  105 (173)
T ss_dssp             HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----SCCGG-G-
T ss_pred             ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC----cchhH-h-
Confidence            4678899999984  78999999999999999999999999999986 89999999999986654432    34666 4 


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      .++++++++++++.++++.|.+++++.+||+| +|+++|+||..|+++.+..
T Consensus       106 ~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          106 LRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             SBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred             cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence            47788999999999999999999999999999 8999999999999987654

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.78  E-value=3.1e-18  Score=137.99  Aligned_cols=127  Identities=15%  Similarity=0.194  Sum_probs=111.6

Q ss_pred             CcccchhccccCC----ceee--cCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHHHcC--------
Q 041090           48 GGERTVKKLRLSK----ALTI--PEGTIVSDACRRMASRRVDAVLLT--DANALLSGIVTDKDITTRVIAEG--------  111 (294)
Q Consensus        48 ~~~~~v~dl~~~~----~~~v--~~~~sv~~a~~~~~~~~~~~lpV~--d~~~~~~Givt~~di~~~~~~~~--------  111 (294)
                      ....+|+|+|.+.    ++++  .+++++.+|++.|.+++++.+||+  |++|+++|+||..|+++.+....        
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~   87 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS   87 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence            4578999999987    7888  999999999999999999999999  77899999999999986654321        


Q ss_pred             ---------------CCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090          112 ---------------LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       112 ---------------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~  174 (294)
                                     ......++.++|.++++++.+++++.++++.|.+++++++||+++|+++|+||..|+++.+..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A           88 TSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             TCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             cceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEEEEHHHHHHHHHH
Confidence                           112356899999889999999999999999999999999999999999999999999987655

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.78  E-value=9.5e-19  Score=137.80  Aligned_cols=128  Identities=15%  Similarity=0.160  Sum_probs=110.6

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC----CCcccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL----RPDQTVVS  120 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~----~~~~~~v~  120 (294)
                      .....+|+++|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++.+.....    .....++.
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~   89 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVE   89 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHH
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHH
Confidence            4567899999998  89999999999999999999999999999999999999999999754432111    13367899


Q ss_pred             cccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHH
Q 041090          121 KIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRM  176 (294)
Q Consensus       121 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~  176 (294)
                      ++|.++++++.+++++.++++.|.+.++  +||++ +|+++|+||..|+++.+....
T Consensus        90 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~  144 (159)
T 1yav_A           90 EVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHI  144 (159)
T ss_dssp             HHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             HhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHH
Confidence            9999999999999999999999998876  99999 899999999999998776543

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=2.4e-18  Score=136.44  Aligned_cols=141  Identities=17%  Similarity=0.209  Sum_probs=110.4

Q ss_pred             CCccccccccccc---CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHH
Q 041090          113 RPDQTVVSKIMTR---NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAA  188 (294)
Q Consensus       113 ~~~~~~v~~~~~~---~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~  188 (294)
                      .....+++++|.+   +++++.+++++.++++.|.+++++.+||+| +|+++|+|+..|+++......            
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------------   87 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQG------------   87 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHG------------
T ss_pred             hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcC------------
Confidence            3456789999985   688999999999999999999999999999 899999999999987654310            


Q ss_pred             HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeeh
Q 041090          189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTS  268 (294)
Q Consensus       189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~  268 (294)
                                              ......++.++|.+  ++.++.+++++.+|+++|.+++++.+||+|+|+++|+||.
T Consensus        88 ------------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit~  141 (165)
T 3fhm_A           88 ------------------------AASLQQSVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISI  141 (165)
T ss_dssp             ------------------------GGGGTSBGGGTSBS--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             ------------------------CccccCCHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEH
Confidence                                    12234679999977  8999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHccCCCCcceeeeccc
Q 041090          269 KDVLMRVVAQNLSPELTLVERFIM  292 (294)
Q Consensus       269 ~Dil~~~~~~~~~~~~~~v~~~~~  292 (294)
                      .||++ .+......+...++++|.
T Consensus       142 ~dil~-~~~~~~~~~~~~l~~~i~  164 (165)
T 3fhm_A          142 GDVVK-ARIGEIEAEAEHIKAYIA  164 (165)
T ss_dssp             HHHHH-HTTCC-------------
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHhc
Confidence            99994 455545444445666653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.78  E-value=3.6e-18  Score=128.67  Aligned_cols=120  Identities=17%  Similarity=0.220  Sum_probs=104.9

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhh
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQW  197 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (294)
                      +++++|.++++++.+++++.++++.|.+++++.+||+|+|+++|+++..|+++.....                      
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~----------------------   59 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG----------------------   59 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT----------------------
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhcC----------------------
Confidence            5788998899999999999999999999999999999989999999999998643220                      


Q ss_pred             CCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHHH
Q 041090          198 GSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVV  276 (294)
Q Consensus       198 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~~  276 (294)
                                     ......++.++|.+  ++.++.+++++.+++++|.+++++.+||+|+|+++|+||..|+++.+.
T Consensus        60 ---------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           60 ---------------DDLAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKM  121 (125)
T ss_dssp             ---------------CCTTTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHC
T ss_pred             ---------------CcccccCHHHHcCC--CCeEECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHHH
Confidence                           01124678999977  899999999999999999999999999999999999999999996554

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.78  E-value=4.4e-19  Score=139.42  Aligned_cols=118  Identities=11%  Similarity=0.182  Sum_probs=104.7

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCC-cEEEEEeHHHHHHHHHHcCCCCccccccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANA-LLSGIVTDKDITTRVIAEGLRPDQTVVSKIM  123 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~-~~~Givt~~di~~~~~~~~~~~~~~~v~~~~  123 (294)
                      .+...+|+++|++  +++++++++++.+|++.|.+++++.+||+|+++ +++|++|.+|+++.+. .+   ...+++++|
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~-~~---~~~~v~~im  109 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMF-NP---EQFHLKSIL  109 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSS-CG---GGCCHHHHC
T ss_pred             ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH-cC---CcccHHHHc
Confidence            3567899999997  799999999999999999999999999999874 9999999999974321 11   367899999


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCL  169 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll  169 (294)
                      .+ ++++++++++.++++.|.+++++.+||+| +|+++|+||..|++
T Consensus       110 ~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          110 RP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             BC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             CC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            65 88999999999999999999999999999 89999999999985

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.77  E-value=2.3e-18  Score=131.01  Aligned_cols=121  Identities=18%  Similarity=0.214  Sum_probs=102.7

Q ss_pred             ccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHH
Q 041090          115 DQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAV  190 (294)
Q Consensus       115 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~  190 (294)
                      ...+++++|.+  .++++.+++++.++++.|.+++++++||++ + |+++|+++..|+++....                
T Consensus         4 ~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~----------------   67 (130)
T 3i8n_A            4 QDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS----------------   67 (130)
T ss_dssp             ---CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT----------------
T ss_pred             CcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc----------------
Confidence            35789999984  456899999999999999999999999999 5 899999999999865322                


Q ss_pred             HHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehh
Q 041090          191 EGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSK  269 (294)
Q Consensus       191 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~  269 (294)
                                             .....++.++| +  ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||+.
T Consensus        68 -----------------------~~~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~  121 (130)
T 3i8n_A           68 -----------------------GSGQKQLGAVM-R--PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLE  121 (130)
T ss_dssp             -----------------------TTTTSBHHHHS-E--ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHH
T ss_pred             -----------------------CCCcCCHHHHh-c--CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHH
Confidence                                   01235788999 4  688999999999999999999999999999 79999999999


Q ss_pred             HHHHHHHH
Q 041090          270 DVLMRVVA  277 (294)
Q Consensus       270 Dil~~~~~  277 (294)
                      |+++.++.
T Consensus       122 dil~~l~g  129 (130)
T 3i8n_A          122 DIFEHLVG  129 (130)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHcC
Confidence            99977654

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.77  E-value=2.9e-18  Score=134.57  Aligned_cols=126  Identities=18%  Similarity=0.206  Sum_probs=107.4

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC----CCCcccccc
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG----LRPDQTVVS  120 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~----~~~~~~~v~  120 (294)
                      .....+|+++|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+....    ......++.
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~   86 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVE   86 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGG
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHH
Confidence            4567899999997  8999999999999999999999999999998899999999999975432110    112356899


Q ss_pred             cccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          121 KIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       121 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      ++|.++++++.+++++.++++.|.++++  +||++ +|+++|+||..|+++.+..
T Consensus        87 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           87 EVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             GTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred             HHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999998876  99999 7999999999999987654

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.77  E-value=7.4e-18  Score=128.47  Aligned_cols=122  Identities=16%  Similarity=0.269  Sum_probs=106.5

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER  195 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (294)
                      ..+++++|.++++++.+++++.++++.|.+++++.+||+++|+++|+++..|+++....                     
T Consensus         3 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~---------------------   61 (133)
T 2ef7_A            3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGK---------------------   61 (133)
T ss_dssp             CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHT---------------------
T ss_pred             cccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhc---------------------
Confidence            56899999988999999999999999999999999999998899999999999764321                     


Q ss_pred             hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                                       ......++.++|.+  ++.++.+++++.+|++.|.+++.+.+||+| +|+++|+||..|+++.
T Consensus        62 -----------------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~  122 (133)
T 2ef7_A           62 -----------------GKSLETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA  122 (133)
T ss_dssp             -----------------TCCTTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             -----------------CCCcccCHHHHcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHH
Confidence                             00123678999977  899999999999999999999999999999 8999999999999955


Q ss_pred             HHH
Q 041090          275 VVA  277 (294)
Q Consensus       275 ~~~  277 (294)
                      +..
T Consensus       123 ~~~  125 (133)
T 2ef7_A          123 IDD  125 (133)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.77  E-value=2.5e-18  Score=129.09  Aligned_cols=115  Identities=24%  Similarity=0.413  Sum_probs=103.2

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQ  196 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (294)
                      +++++|.++++++.+++++.++++.|.+++++.+||++ +|+++|+++..|+++....                      
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~----------------------   59 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ----------------------   59 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT----------------------
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh----------------------
Confidence            57889999999999999999999999999999999999 8999999999999765332                      


Q ss_pred             hCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090          197 WGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV  275 (294)
Q Consensus       197 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~  275 (294)
                                         ...++.++|.+  ++.++.+++++.+++++|.+++++.+||+| +|+++|+||..|+++.+
T Consensus        60 -------------------~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           60 -------------------NKKTIEEIMTR--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             -------------------TCCBGGGTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             -------------------cccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHh
Confidence                               12368999977  899999999999999999999999999999 59999999999999544

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.77  E-value=2.3e-18  Score=135.36  Aligned_cols=125  Identities=20%  Similarity=0.220  Sum_probs=103.7

Q ss_pred             cccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          116 QTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       116 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      ..+++++|.+  +++++.+++++.+|+++|.+++++++||+| +|+++|++|..|++++......               
T Consensus        14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~---------------   78 (156)
T 3k6e_A           14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL---------------   78 (156)
T ss_dssp             HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC---------------
T ss_pred             hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccc---------------
Confidence            3467888864  788999999999999999999999999999 7999999999999876543100               


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                                        ........++.++|.+  ++.++.+++++.+|+++|.++++  +||+| +|+++|+||+.||
T Consensus        79 ------------------~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Di  136 (156)
T 3k6e_A           79 ------------------SQEIMADTDIVHMTKT--DVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSI  136 (156)
T ss_dssp             ------------------CHHHHTTSBGGGTCBC--SCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHH
T ss_pred             ------------------ccccccccCHHHhhcC--CceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHH
Confidence                              0122345789999977  99999999999999999987754  99999 8999999999999


Q ss_pred             HHHHHH
Q 041090          272 LMRVVA  277 (294)
Q Consensus       272 l~~~~~  277 (294)
                      ++++..
T Consensus       137 l~~~~~  142 (156)
T 3k6e_A          137 LKAVNA  142 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            966644

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.76  E-value=1.2e-17  Score=131.73  Aligned_cols=130  Identities=21%  Similarity=0.308  Sum_probs=107.7

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      ..+++++|.++++++.+++++.++++.|.+.+++.+||+| +|+++|+|+..|++..........               
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~---------------   68 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRS---------------   68 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC-----------------
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhccc---------------
Confidence            4689999998999999999999999999999999999999 899999999999987654311000               


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR  274 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~  274 (294)
                                    ..........++.++|.+  ++.++.+++++.+|+++|.+.+++.+||+|+|+++|+||+.||++.
T Consensus        69 --------------~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~  132 (160)
T 2o16_A           69 --------------AQGDSLAFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTI  132 (160)
T ss_dssp             ---------------------CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHH
T ss_pred             --------------ccccchhcccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHH
Confidence                          000112245679999977  8999999999999999999999999999999999999999999955


Q ss_pred             HH
Q 041090          275 VV  276 (294)
Q Consensus       275 ~~  276 (294)
                      +.
T Consensus       133 ~~  134 (160)
T 2o16_A          133 AI  134 (160)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.76  E-value=2.1e-18  Score=131.07  Aligned_cols=118  Identities=19%  Similarity=0.312  Sum_probs=102.5

Q ss_pred             ccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090          116 QTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE  191 (294)
Q Consensus       116 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~  191 (294)
                      +.+++++|.  .+++++++++++.++++.|.+++++++||++ + ++++|+++..|+++...                  
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~------------------   65 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML------------------   65 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT------------------
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc------------------
Confidence            568999998  6778999999999999999999999999999 4 89999999999875311                  


Q ss_pred             HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhH
Q 041090          192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKD  270 (294)
Q Consensus       192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~D  270 (294)
                                             ....++.++|.   ++.++.+++++.+|+++|.+++.+.+||+| +|+++|+||+.|
T Consensus        66 -----------------------~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~D  119 (129)
T 3jtf_A           66 -----------------------EPALDIRSLVR---PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMED  119 (129)
T ss_dssp             -----------------------CTTSCGGGGCB---CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHH
T ss_pred             -----------------------cCCcCHHHHhC---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                                   01356888883   488999999999999999999999999999 699999999999


Q ss_pred             HHHHHHH
Q 041090          271 VLMRVVA  277 (294)
Q Consensus       271 il~~~~~  277 (294)
                      +++.++.
T Consensus       120 il~~l~g  126 (129)
T 3jtf_A          120 VLEQIVG  126 (129)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9977765

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.76  E-value=3.3e-18  Score=130.23  Aligned_cols=121  Identities=15%  Similarity=0.246  Sum_probs=101.6

Q ss_pred             cccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          117 TVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       117 ~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      .+++++|.  .+++++++++++.++++.|.+++++++||++  +|+++|+++..|+++....                  
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~------------------   63 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE------------------   63 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTS------------------
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhc------------------
Confidence            46889996  3688999999999999999999999999996  4799999999999865322                  


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                           +.              .....++.++| +  ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||+.|+
T Consensus        64 -----~~--------------~~~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Di  121 (130)
T 3hf7_A           64 -----KK--------------EFTKEIMLRAA-D--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDI  121 (130)
T ss_dssp             -----SS--------------CCCHHHHHHHS-B--CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHH
T ss_pred             -----cC--------------ccchhhHHHhc-c--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHH
Confidence                 00              00123577888 4  689999999999999999999999999998 7999999999999


Q ss_pred             HHHHHH
Q 041090          272 LMRVVA  277 (294)
Q Consensus       272 l~~~~~  277 (294)
                      ++.++.
T Consensus       122 l~~l~g  127 (130)
T 3hf7_A          122 LEEIVG  127 (130)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            977664

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.75  E-value=7.2e-18  Score=132.38  Aligned_cols=137  Identities=21%  Similarity=0.325  Sum_probs=107.9

Q ss_pred             cccccccc------cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHH
Q 041090          117 TVVSKIMT------RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAV  190 (294)
Q Consensus       117 ~~v~~~~~------~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~  190 (294)
                      .+++++|.      .+++++.+++++.++++.|.+++++.+||.++|+++|+++..|+++.+...               
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~---------------   71 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQ---------------   71 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGG---------------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhc---------------
Confidence            46888887      445899999999999999999999999996689999999999998653220               


Q ss_pred             HHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhH
Q 041090          191 EGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKD  270 (294)
Q Consensus       191 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~D  270 (294)
                             +              ......++.++|.+  ++.++.+++++.+|+++|.+++++.+||+|+|+++|+||+.|
T Consensus        72 -------~--------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~d  128 (157)
T 4fry_A           72 -------E--------------RSSKATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGD  128 (157)
T ss_dssp             -------T--------------CCSSSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHH
T ss_pred             -------c--------------CCccccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHH
Confidence                   0              00134678999977  899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCCcceeeeccc
Q 041090          271 VLMRVVAQNLSPELTLVERFIM  292 (294)
Q Consensus       271 il~~~~~~~~~~~~~~v~~~~~  292 (294)
                      |++. +..........++++|.
T Consensus       129 il~~-l~~~~~~~~~~~~~~i~  149 (157)
T 4fry_A          129 LVKS-VIADQQFTISQLEHYIH  149 (157)
T ss_dssp             HHHH-HHTTCCCCCC-------
T ss_pred             HHHH-HHHHHHhhHHHHHhhcc
Confidence            9955 45445444446666653

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.75  E-value=1.4e-18  Score=131.65  Aligned_cols=120  Identities=21%  Similarity=0.273  Sum_probs=101.5

Q ss_pred             ccccccccccC--CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090          116 QTVVSKIMTRN--PIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE  191 (294)
Q Consensus       116 ~~~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~  191 (294)
                      +.+++++|.+.  ++++.+++++.++++.|.+++++++||++ + |+++|+++..|+++....                 
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS-----------------   64 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence            45789999854  88999999999999999999999999999 5 899999999999753211                 


Q ss_pred             HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhH
Q 041090          192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKD  270 (294)
Q Consensus       192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~D  270 (294)
                                            .....++.++|.   ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||+.|
T Consensus        65 ----------------------~~~~~~v~~~m~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~d  119 (127)
T 3nqr_A           65 ----------------------DAEAFSMDKVLR---TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIED  119 (127)
T ss_dssp             ----------------------TCCCCCHHHHCB---CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ----------------------cCCCCCHHHHcC---CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                                  112456889993   478999999999999999999999999999 799999999999


Q ss_pred             HHHHHHH
Q 041090          271 VLMRVVA  277 (294)
Q Consensus       271 il~~~~~  277 (294)
                      +++.++.
T Consensus       120 ll~~l~g  126 (127)
T 3nqr_A          120 ILELIVG  126 (127)
T ss_dssp             HHHHC--
T ss_pred             HHHHHhC
Confidence            9976543

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.75  E-value=3.5e-18  Score=129.58  Aligned_cols=120  Identities=12%  Similarity=0.174  Sum_probs=104.8

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER  195 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (294)
                      ..+++++|.++++++.+++++.++++.|.+++++.+||+++|+++|+++..|+++....                     
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~---------------------   62 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKG---------------------   62 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSS---------------------
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhh---------------------
Confidence            56899999999999999999999999999999999999999999999999999753111                     


Q ss_pred             hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                                       ......++.++|.+  ++.++.+++++.+++++|.+++++.+||+| +|+++|+||+.|+++.
T Consensus        63 -----------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~  123 (128)
T 3gby_A           63 -----------------WPTVKEKLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGF  123 (128)
T ss_dssp             -----------------SCCTTCBCCGGGCB--CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             -----------------CCcccCcHHHHccC--CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHH
Confidence                             00012568899977  899999999999999999999999999998 8999999999999955


Q ss_pred             H
Q 041090          275 V  275 (294)
Q Consensus       275 ~  275 (294)
                      +
T Consensus       124 l  124 (128)
T 3gby_A          124 L  124 (128)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.75  E-value=9.7e-18  Score=131.19  Aligned_cols=121  Identities=21%  Similarity=0.294  Sum_probs=106.4

Q ss_pred             ccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEE-E--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHH
Q 041090          115 DQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVV-E--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAA  189 (294)
Q Consensus       115 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~-~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~  189 (294)
                      ...+++++|.+  +++++.+++++.++++.|.+++++++||+ +  +|+++|+++..|+++.....              
T Consensus        18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~--------------   83 (153)
T 3oco_A           18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID--------------   83 (153)
T ss_dssp             HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH--------------
T ss_pred             CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC--------------
Confidence            46789999986  78899999999999999999999999999 5  48999999999998754331              


Q ss_pred             HHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeeh
Q 041090          190 VEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTS  268 (294)
Q Consensus       190 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~  268 (294)
                                                ...++.++| +  ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||+
T Consensus        84 --------------------------~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~  134 (153)
T 3oco_A           84 --------------------------DKAKISTIM-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITD  134 (153)
T ss_dssp             --------------------------TTSBGGGTC-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECH
T ss_pred             --------------------------CCCcHHHHh-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeH
Confidence                                      136789999 7  899999999999999999999999999999 6999999999


Q ss_pred             hHHHHHHHHc
Q 041090          269 KDVLMRVVAQ  278 (294)
Q Consensus       269 ~Dil~~~~~~  278 (294)
                      .||++.++.+
T Consensus       135 ~dil~~l~~~  144 (153)
T 3oco_A          135 KDVYEELFGN  144 (153)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhcc
Confidence            9999776654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.75  E-value=1.7e-17  Score=127.84  Aligned_cols=119  Identities=16%  Similarity=0.295  Sum_probs=103.5

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CC--EEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NG--EVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~--~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      ..+++++|.++++++.+++++.++++.|.+++++.+||+| ++  +++|+++..|+++....                  
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~------------------   65 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ------------------   65 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT------------------
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhc------------------
Confidence            3579999999999999999999999999999999999999 66  89999999999864321                  


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                                          ......++.++|.+  ++.++.++ ++.+|+++|.+++++.+||+| +|+++|+||..||
T Consensus        66 --------------------~~~~~~~v~~~m~~--~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dl  122 (141)
T 2rih_A           66 --------------------RLDLDGPAMPIANS--PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDL  122 (141)
T ss_dssp             --------------------TCCTTSBSGGGCBC--CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             --------------------CCCCCCCHHHHcCC--CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHH
Confidence                                00123678999977  89999999 999999999999999999999 8999999999999


Q ss_pred             HHHH
Q 041090          272 LMRV  275 (294)
Q Consensus       272 l~~~  275 (294)
                      ++.+
T Consensus       123 l~~~  126 (141)
T 2rih_A          123 CFER  126 (141)
T ss_dssp             HSCH
T ss_pred             HHHH
Confidence            8443

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.75  E-value=1e-17  Score=130.41  Aligned_cols=117  Identities=17%  Similarity=0.211  Sum_probs=103.7

Q ss_pred             ccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 041090          117 TVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGV  193 (294)
Q Consensus       117 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~  193 (294)
                      .+++++|.+  +++++.+++++.++++.|.+++++.+||+| +|+++|+|+..|+++....                   
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~-------------------   88 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT-------------------   88 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS-------------------
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc-------------------
Confidence            589999998  899999999999999999999999999999 8999999999999864321                   


Q ss_pred             HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHH
Q 041090          194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL  272 (294)
Q Consensus       194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil  272 (294)
                          +              ......++.++|.+  ++.++.+++++.+|+++|.+++++.+||+|+++++|+||..||+
T Consensus        89 ----~--------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil  147 (149)
T 3k2v_A           89 ----G--------------VDMRDASIADVMTR--GGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLL  147 (149)
T ss_dssp             ----S--------------SCCTTCBHHHHSEE--SCCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHT
T ss_pred             ----C--------------CCcccCcHHHHcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhh
Confidence                0              01134678999977  89999999999999999999999999999977999999999997

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.75  E-value=1e-17  Score=133.93  Aligned_cols=142  Identities=18%  Similarity=0.182  Sum_probs=111.2

Q ss_pred             CcEEEEEeHHHHHHHHHHcCCCCcccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHH
Q 041090           92 ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITK  167 (294)
Q Consensus        92 ~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~d  167 (294)
                      +.--|.++..+-  .++.....+...+++++|.  .+++++++++++.++++.|.+++++++||++ + ++++|+|+..|
T Consensus        13 ~~~~g~l~~~e~--~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~D   90 (173)
T 3ocm_A           13 MPAVPAFGVEER--NMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKD   90 (173)
T ss_dssp             -----CCCHHHH--HHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHH
T ss_pred             HHhcCCcCHHHH--HHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHH
Confidence            334588886663  2222223445778999996  4688899999999999999999999999998 5 79999999999


Q ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHH
Q 041090          168 CLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMR  247 (294)
Q Consensus       168 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~  247 (294)
                      |+......                                        ...++.  |.+  +++++.+++++.+|+++|.
T Consensus        91 l~~~~~~~----------------------------------------~~~~v~--~~~--~~~~v~~~~~l~~al~~m~  126 (173)
T 3ocm_A           91 LVADLITE----------------------------------------GRVRRN--RLR--DPIIVHESIGILRLMDTLK  126 (173)
T ss_dssp             HHHHHHHH----------------------------------------SSCCGG--GSB--CCCEECGGGCHHHHHHHHH
T ss_pred             HHHHHhcC----------------------------------------CcchhH--hcC--CCeEECCCCcHHHHHHHHH
Confidence            98754320                                        124566  434  7899999999999999999


Q ss_pred             HhCCceeEEee-CCeEeEeeehhHHHHHHHHcc
Q 041090          248 EFRSNSALIVT-GSKIQGILTSKDVLMRVVAQN  279 (294)
Q Consensus       248 ~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~~~  279 (294)
                      +++++.+||+| +|+++|+||+.||++.++.+-
T Consensus       127 ~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i  159 (173)
T 3ocm_A          127 RSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEF  159 (173)
T ss_dssp             HSTTCCEEEECTTCCEEEEECHHHHHHHHHCCC
T ss_pred             HcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcC
Confidence            99999999998 799999999999997766543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.75  E-value=1.2e-17  Score=127.72  Aligned_cols=122  Identities=17%  Similarity=0.275  Sum_probs=105.3

Q ss_pred             cccccccc---cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 041090          117 TVVSKIMT---RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGV  193 (294)
Q Consensus       117 ~~v~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~  193 (294)
                      .+++++|.   .+++++++++++.++++.|.+++++.+||+++|+++|+++..|+++.....                  
T Consensus         6 ~~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~------------------   67 (135)
T 2rc3_A            6 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL------------------   67 (135)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGS------------------
T ss_pred             eeHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHc------------------
Confidence            37889998   889999999999999999999999999999988999999999997532210                  


Q ss_pred             HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHH
Q 041090          194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLM  273 (294)
Q Consensus       194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~  273 (294)
                          |              ......++.++|.+  ++.++.+++++.+|+++|.+++++.+||+|+|+++|+||..|+++
T Consensus        68 ----~--------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~  127 (135)
T 2rc3_A           68 ----D--------------KPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVK  127 (135)
T ss_dssp             ----S--------------SCGGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             ----C--------------CCcccCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHH
Confidence                0              01234678999977  899999999999999999999999999999999999999999995


Q ss_pred             HHH
Q 041090          274 RVV  276 (294)
Q Consensus       274 ~~~  276 (294)
                      .+.
T Consensus       128 ~~~  130 (135)
T 2rc3_A          128 DAI  130 (135)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.75  E-value=2.5e-17  Score=138.84  Aligned_cols=126  Identities=9%  Similarity=0.089  Sum_probs=105.6

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHHHc----CC---C-----
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN--ALLSGIVTDKDITTRVIAE----GL---R-----  113 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~--~~~~Givt~~di~~~~~~~----~~---~-----  113 (294)
                      ...++|+|+|+++++++.+++++.+|.++|.+++++++||+|++  ++++|+|+.+||++.+...    ..   .     
T Consensus        10 ~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~   89 (250)
T 2d4z_A           10 KYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEAD   89 (250)
T ss_dssp             CSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBC
T ss_pred             cCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccc
Confidence            35678999999999999999999999999999999999999974  6899999999997544321    00   0     


Q ss_pred             ---------------------C----------------------------------------------------------
Q 041090          114 ---------------------P----------------------------------------------------------  114 (294)
Q Consensus       114 ---------------------~----------------------------------------------------------  114 (294)
                                           +                                                          
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (250)
T 2d4z_A           90 EEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEE  169 (250)
T ss_dssp             CC---------------------------------------------------------------------------CCS
T ss_pred             ccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccccc
Confidence                                 0                                                          


Q ss_pred             --------------ccccc--c-cccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHH
Q 041090          115 --------------DQTVV--S-KIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAI  173 (294)
Q Consensus       115 --------------~~~~v--~-~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~  173 (294)
                                    ...++  . .+|.+.++++.++++|.++..+|...+++++||+++|+++||||+.||++++.
T Consensus       170 ~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          170 MLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             ccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHHH
Confidence                          01112  2 35778889999999999999999999999999999999999999999998764

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.74  E-value=2.1e-17  Score=126.81  Aligned_cols=126  Identities=21%  Similarity=0.314  Sum_probs=107.3

Q ss_pred             CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      +...+++++|.++++++++++++.++++.|.+++++.+||+| +|+++|+++..|+++.....                 
T Consensus         4 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-----------------   66 (138)
T 2yzi_A            4 DMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP-----------------   66 (138)
T ss_dssp             CTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT-----------------
T ss_pred             hhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhc-----------------
Confidence            446789999999999999999999999999999999999999 89999999999997432210                 


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                           |               .....++.++|.+  ++.++.+++++.+|+++|.+++++.+ |+| +|+++|+||..||
T Consensus        67 -----~---------------~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~di  123 (138)
T 2yzi_A           67 -----G---------------LPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDL  123 (138)
T ss_dssp             -----C---------------CCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHH
T ss_pred             -----C---------------CcccCCHHHHhhC--CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHH
Confidence                 0               0124678999977  89999999999999999999999999 999 8999999999999


Q ss_pred             HHHHHHccC
Q 041090          272 LMRVVAQNL  280 (294)
Q Consensus       272 l~~~~~~~~  280 (294)
                      ++. +...+
T Consensus       124 l~~-~~~~~  131 (138)
T 2yzi_A          124 LEA-SRRRL  131 (138)
T ss_dssp             HHH-HHCCS
T ss_pred             HHH-HHHHH
Confidence            954 44433

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.74  E-value=2e-18  Score=132.43  Aligned_cols=121  Identities=18%  Similarity=0.284  Sum_probs=101.9

Q ss_pred             ccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090          116 QTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE  191 (294)
Q Consensus       116 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~  191 (294)
                      +.+++++|.  .+++++.+++++.++++.|.+++++++||++ + ++++|+++..|+++....                 
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~-----------------   64 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILK-----------------   64 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGS-----------------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHh-----------------
Confidence            457899998  5678999999999999999999999999999 5 799999999999754211                 


Q ss_pred             HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhH
Q 041090          192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKD  270 (294)
Q Consensus       192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~D  270 (294)
                                           ......++.++|.   ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||+.|
T Consensus        65 ---------------------~~~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~D  120 (136)
T 3lfr_A           65 ---------------------ADGDSDDVKKLLR---PATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIED  120 (136)
T ss_dssp             ---------------------SSGGGCCGGGTCB---CCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHH
T ss_pred             ---------------------ccCCCcCHHHHcC---CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence                                 0112357889994   489999999999999999999999999999 799999999999


Q ss_pred             HHHHHHH
Q 041090          271 VLMRVVA  277 (294)
Q Consensus       271 il~~~~~  277 (294)
                      +++.++.
T Consensus       121 il~~l~~  127 (136)
T 3lfr_A          121 VLEQIVG  127 (136)
T ss_dssp             HHTTC--
T ss_pred             HHHHHhC
Confidence            9966655

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.74  E-value=2.9e-17  Score=129.35  Aligned_cols=124  Identities=16%  Similarity=0.258  Sum_probs=105.4

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      ..+++++|.+ ++++.+++++.++++.|.+++++.+||+| +|+++|+|+..|+++.....                   
T Consensus        16 ~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-------------------   75 (159)
T 3fv6_A           16 KLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQ-------------------   75 (159)
T ss_dssp             TCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSC-------------------
T ss_pred             hCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhcc-------------------
Confidence            5689999986 56899999999999999999999999999 89999999999998653210                   


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CC---eEeEeeehhH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GS---KIQGILTSKD  270 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g---~~vGivt~~D  270 (294)
                                        ......++.++|.+..++.++.+++++.+|+++|.+++++.+||+| +|   +++|+||+.|
T Consensus        76 ------------------~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~d  137 (159)
T 3fv6_A           76 ------------------QELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTN  137 (159)
T ss_dssp             ------------------SCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHH
T ss_pred             ------------------CcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHH
Confidence                              1123467899996433688999999999999999999999999999 66   9999999999


Q ss_pred             HHHHHHH
Q 041090          271 VLMRVVA  277 (294)
Q Consensus       271 il~~~~~  277 (294)
                      |++.+..
T Consensus       138 il~~l~~  144 (159)
T 3fv6_A          138 MTKILVS  144 (159)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9966554

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.74  E-value=1.5e-17  Score=127.49  Aligned_cols=121  Identities=24%  Similarity=0.365  Sum_probs=104.9

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHH-HHHHHHHHHHHHhhchhHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKC-LYDAISRMEKAAEQGSAIAAAVEGV  193 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dl-l~~~~~~~~~~~~~~~~~~~~~~~~  193 (294)
                      ..+++++|.++++++.+++++.++++.|.+++++.+||+| +|+++|+++..|+ ++....                   
T Consensus         7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-------------------   67 (138)
T 2p9m_A            7 NIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRD-------------------   67 (138)
T ss_dssp             TCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTT-------------------
T ss_pred             cCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhh-------------------
Confidence            5789999998999999999999999999999999999999 8999999999998 653211                   


Q ss_pred             HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhC-----CceeEEee-CCeEeEeee
Q 041090          194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFR-----SNSALIVT-GSKIQGILT  267 (294)
Q Consensus       194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd-~g~~vGivt  267 (294)
                                         ......++.++|.+  ++.++.+++++.+++++|.+++     ++.+||+| +|+++|+||
T Consensus        68 -------------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit  126 (138)
T 2p9m_A           68 -------------------KYTLETTIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIIS  126 (138)
T ss_dssp             -------------------CCCSSCBHHHHSCS--SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEE
T ss_pred             -------------------cccCCcCHHHHhCC--CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEE
Confidence                               11234678999976  8999999999999999999999     99999999 899999999


Q ss_pred             hhHHHHHHH
Q 041090          268 SKDVLMRVV  276 (294)
Q Consensus       268 ~~Dil~~~~  276 (294)
                      ..|+++.+.
T Consensus       127 ~~dll~~~~  135 (138)
T 2p9m_A          127 DGDIIRTIS  135 (138)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999995543

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.73  E-value=6.1e-17  Score=127.73  Aligned_cols=130  Identities=11%  Similarity=0.155  Sum_probs=106.6

Q ss_pred             CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHH
Q 041090          114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAV  190 (294)
Q Consensus       114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~  190 (294)
                      ....+++++|.++++++.+++++.++++.|.+++++.+||+|   +|+++|+++..|+++........            
T Consensus        10 ~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~------------   77 (164)
T 2pfi_A           10 SHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS------------   77 (164)
T ss_dssp             CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC----------------
T ss_pred             ccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc------------
Confidence            346789999999999999999999999999999999999998   48999999999998654321000            


Q ss_pred             HHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCc------eeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeE
Q 041090          191 EGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAK------VAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQG  264 (294)
Q Consensus       191 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vG  264 (294)
                                           .......++.++|..  .      +.++.+++++.+|+++|.+++++.+||+|+|+++|
T Consensus        78 ---------------------~~~~~~~~v~~~m~~--~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~G  134 (164)
T 2pfi_A           78 ---------------------RAPGHQQCLQDILAR--GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVG  134 (164)
T ss_dssp             ------------------------CCCCBHHHHHHT--TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEE
T ss_pred             ---------------------cCCcccchhhhhhcc--cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEE
Confidence                                 000123467788866  4      78999999999999999999999999999999999


Q ss_pred             eeehhHHHHHHHHc
Q 041090          265 ILTSKDVLMRVVAQ  278 (294)
Q Consensus       265 ivt~~Dil~~~~~~  278 (294)
                      +||+.||++.+...
T Consensus       135 iit~~dil~~~~~~  148 (164)
T 2pfi_A          135 CVSWVEMKKAISNL  148 (164)
T ss_dssp             EEEHHHHHHHHHHH
T ss_pred             EEEHHHHHHHHHhh
Confidence            99999999665553

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.73  E-value=5.5e-18  Score=129.19  Aligned_cols=122  Identities=15%  Similarity=0.226  Sum_probs=104.0

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      ..+++++|.++++++.+++++.++++.|.+++++.+||+| +|+++|+++..|++......                   
T Consensus         7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-------------------   67 (133)
T 1y5h_A            7 MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA-------------------   67 (133)
T ss_dssp             -CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG-------------------
T ss_pred             hcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhc-------------------
Confidence            3588999988899999999999999999999999999998 89999999999997421110                   


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR  274 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~  274 (294)
                         +              ......++.++|.+  ++.++.+++++.+++++|.+++++.+||+|+|+++|+||+.||++.
T Consensus        68 ---~--------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~~  128 (133)
T 1y5h_A           68 ---G--------------LDPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARH  128 (133)
T ss_dssp             ---T--------------CCTTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHT
T ss_pred             ---C--------------CCccccCHHHHhcC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHH
Confidence               0              00123678999977  8999999999999999999999999999999999999999999954


Q ss_pred             H
Q 041090          275 V  275 (294)
Q Consensus       275 ~  275 (294)
                      +
T Consensus       129 l  129 (133)
T 1y5h_A          129 L  129 (133)
T ss_dssp             C
T ss_pred             H
Confidence            3

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.72  E-value=5.8e-17  Score=139.86  Aligned_cols=122  Identities=16%  Similarity=0.243  Sum_probs=111.0

Q ss_pred             CCcccchhccccCCceeecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccc
Q 041090           47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSK  121 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~-----~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~  121 (294)
                      .+...+|+++|.++++++++++|+.+|++.|.++     +++.+||+|++|+++|+||.+|++..       ....++++
T Consensus       133 ~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~-------~~~~~v~~  205 (286)
T 2oux_A          133 HYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN-------DDDTLIAD  205 (286)
T ss_dssp             TSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS-------CTTSBHHH
T ss_pred             cCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC-------CCCCcHHH
Confidence            4677899999999999999999999999999987     88999999999999999999999631       23678999


Q ss_pred             ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090          122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR  175 (294)
Q Consensus       122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~  175 (294)
                      +|.++++++++++++.++++.|.+++++.+||+| +|+++|+||..|++..+...
T Consensus       206 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e  260 (286)
T 2oux_A          206 ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  260 (286)
T ss_dssp             HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 89999999999999876553

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.72  E-value=1.7e-17  Score=136.26  Aligned_cols=120  Identities=9%  Similarity=0.114  Sum_probs=106.2

Q ss_pred             CCcccccccccccCCeEEcCCCcHHHHHHHHHhC---CCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHH
Q 041090          113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQG---KFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAA  188 (294)
Q Consensus       113 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~---~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~  188 (294)
                      .+.+.+++++|.+++++++++.++.++++.|.+.   +++.+||++ +++++|+++..||+..                 
T Consensus        50 ~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-----------------  112 (205)
T 3kxr_A           50 QYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH-----------------  112 (205)
T ss_dssp             HSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS-----------------
T ss_pred             CCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC-----------------
Confidence            4557789999999999999999999999999986   789999999 8999999999998631                 


Q ss_pred             HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090          189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT  267 (294)
Q Consensus       189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt  267 (294)
                                                ....++.++|.+  +++++.+++++.+|+++|.+++++.+||+| +|+++|+||
T Consensus       113 --------------------------~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT  164 (205)
T 3kxr_A          113 --------------------------EPHEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVT  164 (205)
T ss_dssp             --------------------------CTTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEE
T ss_pred             --------------------------CCcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEE
Confidence                                      123579999977  899999999999999999999999999999 799999999


Q ss_pred             hhHHHHHHHH
Q 041090          268 SKDVLMRVVA  277 (294)
Q Consensus       268 ~~Dil~~~~~  277 (294)
                      ..|+++.+..
T Consensus       165 ~~Dil~~i~~  174 (205)
T 3kxr_A          165 LRAATALVRE  174 (205)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999955443

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.72  E-value=4e-17  Score=127.03  Aligned_cols=136  Identities=18%  Similarity=0.237  Sum_probs=106.0

Q ss_pred             cccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          116 QTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       116 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      ..+++++|.+  +++++.+++++.++++.|.+++++.+||++ +|+++|+++..|++.........              
T Consensus         4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~--------------   69 (152)
T 4gqw_A            4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTW--------------   69 (152)
T ss_dssp             CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CC--------------
T ss_pred             eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcc--------------
Confidence            4689999988  788999999999999999999999999999 78999999999997532210000              


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                                ................++.++|.+  +++++.+++++.+|+++|.+++++.+||+| +|+++|+||..||
T Consensus        70 ----------~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~di  137 (152)
T 4gqw_A           70 ----------KTFNAVQKLLSKTNGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNV  137 (152)
T ss_dssp             ----------HHHHHHHTC-----CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHH
T ss_pred             ----------cchHHHHHHHHHhccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHH
Confidence                      000000000011234679999987  899999999999999999999999999999 8999999999999


Q ss_pred             HHHHHH
Q 041090          272 LMRVVA  277 (294)
Q Consensus       272 l~~~~~  277 (294)
                      ++.+..
T Consensus       138 l~~~~~  143 (152)
T 4gqw_A          138 VRAALQ  143 (152)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            965554

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.71  E-value=1.8e-16  Score=124.42  Aligned_cols=142  Identities=16%  Similarity=0.206  Sum_probs=109.4

Q ss_pred             CCCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcE-EEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHH
Q 041090          111 GLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRH-LPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAA  189 (294)
Q Consensus       111 ~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~-~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~  189 (294)
                      ...+...+++++|.++++++.+++++.+|++.|.+++++. +||+|+++++|+++..|+++......             
T Consensus        10 ~~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~-------------   76 (157)
T 1o50_A           10 HHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF-------------   76 (157)
T ss_dssp             CTTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH-------------
T ss_pred             hhhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhH-------------
Confidence            3455678899999999999999999999999999999999 99999449999999999987644210             


Q ss_pred             HHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeeh
Q 041090          190 VEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTS  268 (294)
Q Consensus       190 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~  268 (294)
                           +  . .+.....+ ..........++.++|.  . +.++.+++++.+|+++|.+++++.+||+| +|+++|+||+
T Consensus        77 -----~--~-~~~~~~~~-~~~~~~~~~~~v~~im~--~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~  144 (157)
T 1o50_A           77 -----F--G-FIPKEELI-RSSMKRLIAKNASEIML--D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNS  144 (157)
T ss_dssp             -----H--C-CCC--------CCCCCSSCBHHHHCB--C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred             -----H--h-hhccHHHH-HHHHHHHcCCcHHHHcC--C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEH
Confidence                 0  0 00000000 00001123467889995  3 88999999999999999999999999999 8999999999


Q ss_pred             hHHHHHHHH
Q 041090          269 KDVLMRVVA  277 (294)
Q Consensus       269 ~Dil~~~~~  277 (294)
                      .||++.+..
T Consensus       145 ~dll~~l~~  153 (157)
T 1o50_A          145 LEILLALWK  153 (157)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999955543

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.71  E-value=1.8e-16  Score=122.16  Aligned_cols=127  Identities=17%  Similarity=0.287  Sum_probs=103.4

Q ss_pred             cccccc---ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090          116 QTVVSK---IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE  191 (294)
Q Consensus       116 ~~~v~~---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~  191 (294)
                      ..++++   +|..+++++.+++++.++++.|.+++++.+||++ +|+++|+++..|+++......               
T Consensus         7 ~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~---------------   71 (144)
T 2nyc_A            7 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI---------------   71 (144)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----------------
T ss_pred             hcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccc---------------
Confidence            456777   7778889999999999999999999999999999 899999999999976432200               


Q ss_pred             HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcC----CceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEee
Q 041090          192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITEN----AKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGIL  266 (294)
Q Consensus       192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGiv  266 (294)
                                           ......++.++|.+.    .++.++.+++++.+|+++|.+++++.+||+| +|+++|+|
T Consensus        72 ---------------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Gii  130 (144)
T 2nyc_A           72 ---------------------YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVL  130 (144)
T ss_dssp             ------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEE
T ss_pred             ---------------------cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEE
Confidence                                 001245688888642    1588999999999999999999999999999 79999999


Q ss_pred             ehhHHHHHHHHc
Q 041090          267 TSKDVLMRVVAQ  278 (294)
Q Consensus       267 t~~Dil~~~~~~  278 (294)
                      |..||++.+...
T Consensus       131 t~~dil~~l~~~  142 (144)
T 2nyc_A          131 TLSDILKYILLG  142 (144)
T ss_dssp             EHHHHHHHHHHC
T ss_pred             EHHHHHHHHHhc
Confidence            999999766543

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.71  E-value=4.5e-17  Score=126.77  Aligned_cols=126  Identities=17%  Similarity=0.230  Sum_probs=104.5

Q ss_pred             ccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          116 QTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       116 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      ..+++++|.  .+++++.+++++.++++.|.+++++.+||+| +|+++|++|..|+++.....                 
T Consensus        14 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~-----------------   76 (150)
T 3lqn_A           14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGL-----------------   76 (150)
T ss_dssp             HCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCS-----------------
T ss_pred             cCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhh-----------------
Confidence            568999998  4588999999999999999999999999999 89999999999998643210                 


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                            ..+.         .......++.++|.+  ++.++.+++++.+|+++|.++++  +||+| +|+++|+||+.||
T Consensus        77 ------~~~~---------~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~di  137 (150)
T 3lqn_A           77 ------ERIE---------FERLEEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAI  137 (150)
T ss_dssp             ------SSBC---------GGGGGGCBGGGTCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHH
T ss_pred             ------cccc---------hhHHhcCCHHHHhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHH
Confidence                  0000         011234678999977  89999999999999999999887  99999 8999999999999


Q ss_pred             HHHHHH
Q 041090          272 LMRVVA  277 (294)
Q Consensus       272 l~~~~~  277 (294)
                      ++.+..
T Consensus       138 l~~l~~  143 (150)
T 3lqn_A          138 LKLLNK  143 (150)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            955443

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.71  E-value=1.3e-16  Score=128.49  Aligned_cols=149  Identities=15%  Similarity=0.200  Sum_probs=109.2

Q ss_pred             cccccccccccC----CeEE--cCCCcHHHHHHHHHhCCCcEEEEE--E-CCEEEEEEehHHHHHHHHHHHHHHHhhchh
Q 041090          115 DQTVVSKIMTRN----PIFV--TSDSLAIEALQKMVQGKFRHLPVV--E-NGEVIAILDITKCLYDAISRMEKAAEQGSA  185 (294)
Q Consensus       115 ~~~~v~~~~~~~----~~~v--~~~~~l~~~~~~~~~~~~~~~~V~--~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~  185 (294)
                      ...+++++|.+.    ++++  .+++++.+|++.|.+++++.+||+  + +|+++|+|+..|+++...........    
T Consensus         9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~----   84 (185)
T 2j9l_A            9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDG----   84 (185)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSC----
T ss_pred             ccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCC----
Confidence            367899999876    6788  999999999999999999999999  6 89999999999998765431100000    


Q ss_pred             HHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEe
Q 041090          186 IAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGI  265 (294)
Q Consensus       186 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGi  265 (294)
                      +      ...... .+.....  ..........++.++|.+  ++.++.+++++.+|+++|.+++++.+||+|+|+++|+
T Consensus        85 ~------~~~~~~-~~~~~~~--~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGi  153 (185)
T 2j9l_A           85 V------VSTSII-YFTEHSP--PLPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGI  153 (185)
T ss_dssp             C------CTTCEE-ECSSSCC--CCCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEE
T ss_pred             c------ccccee-ecccCCc--ccccccccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEE
Confidence            0      000000 0000000  000011234678999977  8999999999999999999999999999999999999


Q ss_pred             eehhHHHHHHHHc
Q 041090          266 LTSKDVLMRVVAQ  278 (294)
Q Consensus       266 vt~~Dil~~~~~~  278 (294)
                      ||+.||++.+...
T Consensus       154 it~~dll~~l~~~  166 (185)
T 2j9l_A          154 ITKKDVLKHIAQM  166 (185)
T ss_dssp             EEHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHh
Confidence            9999999665543

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.70  E-value=1.2e-16  Score=137.44  Aligned_cols=120  Identities=22%  Similarity=0.335  Sum_probs=108.0

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccc
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI  122 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~-----~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~  122 (294)
                      +...+++++|+++++++.+++++.+|++.|.++     +++.+||+|++|+++|++|.+|++..       ....+++++
T Consensus       132 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-------~~~~~v~~i  204 (278)
T 2yvy_A          132 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------DPRTRVAEI  204 (278)
T ss_dssp             SCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS-------CTTCBSTTT
T ss_pred             CCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC-------CCCCcHHHH
Confidence            456789999999999999999999999999986     78999999999999999999999742       235789999


Q ss_pred             cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      |.++++++++++++.++++.|.+++++.+||+| +|+++|+||..|+++.+..
T Consensus       205 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          205 MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             SBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             hCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence            988999999999999999999999999999999 8999999999999987654

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.70  E-value=6.1e-17  Score=129.73  Aligned_cols=151  Identities=19%  Similarity=0.212  Sum_probs=109.7

Q ss_pred             cccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          116 QTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       116 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      ..+++++|.+  +++++.+++++.++++.|.+++++.+||++ +|+++|+|+..|+++...........         ..
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~---------~~   73 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQND---------TN   73 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC---------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCc---------cc
Confidence            3578899987  789999999999999999999999999999 89999999999998532111000000         00


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                      +....+....... ............++.++|.+  +++++.+++++.+|+++|.+++++.+||+| +|+++|+||+.||
T Consensus        74 ~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~di  150 (180)
T 3sl7_A           74 LFPDVDSTWKTFN-ELQKLISKTYGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNV  150 (180)
T ss_dssp             -------CCCSHH-HHHHHHHTTTTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHH
T ss_pred             ccccccchhhhhH-HHHHHHhccccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHH
Confidence            0000111111111 11122223446789999987  899999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHc
Q 041090          272 LMRVVAQ  278 (294)
Q Consensus       272 l~~~~~~  278 (294)
                      ++.+...
T Consensus       151 l~~~~~~  157 (180)
T 3sl7_A          151 VRAALQI  157 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9776553

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.70  E-value=1.3e-16  Score=148.98  Aligned_cols=125  Identities=14%  Similarity=0.148  Sum_probs=111.8

Q ss_pred             CCcccchhccccCCceeecCC-CCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc
Q 041090           47 AGGERTVKKLRLSKALTIPEG-TIVSDACRRMASRRVDAVLLTD-ANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT  124 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~-~sv~~a~~~~~~~~~~~lpV~d-~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~  124 (294)
                      .|...+|+|+|+++++++.++ +|+.+|+++|.+++++.+||+| ++++++|+||.+||++.+...... ...++.++|.
T Consensus       380 ~l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~-~~~~V~~im~  458 (527)
T 3pc3_A          380 WWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQ-QSDPAIKALN  458 (527)
T ss_dssp             TTTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCC-TTSBGGGGEE
T ss_pred             cccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCc-CCCcHHHHhc
Confidence            478899999999999999999 9999999999999999999999 789999999999998777654433 3678999999


Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C----CEEEEEEehHHHHHHHHH
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N----GEVIAILDITKCLYDAIS  174 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~----~~~vGivt~~dll~~~~~  174 (294)
                      ++++++.+++++.+++++|.++++  +||+| +    |+++|+||..||++++..
T Consensus       459 ~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          459 KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence            999999999999999999976664  68998 4    899999999999987665

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.70  E-value=3.4e-16  Score=131.90  Aligned_cols=159  Identities=14%  Similarity=0.135  Sum_probs=108.8

Q ss_pred             cccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C--CEEEEEEehHHHHHHHHHHHHHHHhhc--------
Q 041090          115 DQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N--GEVIAILDITKCLYDAISRMEKAAEQG--------  183 (294)
Q Consensus       115 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--~~~vGivt~~dll~~~~~~~~~~~~~~--------  183 (294)
                      ...+++++|.++++++.+++++.++.++|.+++++.+||++ +  ++++|+|+..||++.+...........        
T Consensus        11 ~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~   90 (250)
T 2d4z_A           11 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADE   90 (250)
T ss_dssp             SSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCC
T ss_pred             CCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcccc
Confidence            46789999999999999999999999999999999999999 3  579999999999987654321111000        


Q ss_pred             ------h------hHHHHHHHHHHh-------hC----------------C--------------------------CC-
Q 041090          184 ------S------AIAAAVEGVERQ-------WG----------------S--------------------------NF-  201 (294)
Q Consensus       184 ------~------~~~~~~~~~~~~-------~g----------------~--------------------------~~-  201 (294)
                            .      .....+..+...       .|                .                          .. 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (250)
T 2d4z_A           91 EGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEM  170 (250)
T ss_dssp             C---------------------------------------------------------------------------CCSC
T ss_pred             cccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccc
Confidence                  0      000000000000       00                0                          00 


Q ss_pred             CChhhhHHHHHHhhcccch--h-hhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHHH
Q 041090          202 SAPYAFIETLRERMFKPSL--S-TIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVV  276 (294)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~v--~-~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~~  276 (294)
                      -...+ .....+.....++  . .+|..  .++++.++++|.+|..+|...|++++||++.|+++||||++||++++.
T Consensus       171 i~~~~-~~~~~~~~l~~~Vdl~~~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          171 LTLEE-IYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CBHHH-HHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             cChhh-hhhHHHHhcCceeccccccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHHH
Confidence            00000 0111111233444  4 36877  999999999999999999999999999999999999999999995543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.69  E-value=1e-17  Score=131.54  Aligned_cols=117  Identities=17%  Similarity=0.248  Sum_probs=101.1

Q ss_pred             CCccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHH
Q 041090          113 RPDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAA  188 (294)
Q Consensus       113 ~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~  188 (294)
                      .....+++++|.+  +++++++++++.++++.|.+++++++||++ + ++++|+++..|+++....              
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~--------------   99 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN--------------   99 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC--------------
T ss_pred             ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc--------------
Confidence            3446789999986  688999999999999999999999999999 5 499999999999753211              


Q ss_pred             HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeee
Q 041090          189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILT  267 (294)
Q Consensus       189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt  267 (294)
                                               . ...++.++|.   ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||
T Consensus       100 -------------------------~-~~~~v~~im~---~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt  150 (156)
T 3oi8_A          100 -------------------------P-EQFHLKSILR---PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVT  150 (156)
T ss_dssp             -------------------------G-GGCCHHHHCB---CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEE
T ss_pred             -------------------------C-CcccHHHHcC---CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEE
Confidence                                     0 2356889994   488999999999999999999999999999 799999999


Q ss_pred             hhHHH
Q 041090          268 SKDVL  272 (294)
Q Consensus       268 ~~Dil  272 (294)
                      +.||+
T Consensus       151 ~~Dil  155 (156)
T 3oi8_A          151 FEDII  155 (156)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            99986

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.68  E-value=2.1e-16  Score=123.90  Aligned_cols=129  Identities=14%  Similarity=0.196  Sum_probs=105.2

Q ss_pred             Cccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHH
Q 041090          114 PDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAV  190 (294)
Q Consensus       114 ~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~  190 (294)
                      ....+++++|.+  +++++.+++++.++++.|.+++++.+||++ +|+++|+++..|+++....                
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~----------------   71 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILG----------------   71 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBC----------------
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhc----------------
Confidence            346789999986  888999999999999999999999999999 8999999999999764221                


Q ss_pred             HHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehh
Q 041090          191 EGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSK  269 (294)
Q Consensus       191 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~  269 (294)
                             +..+.         .......++.++|.+  ++.++.+++++.+|+++|.++++  +||+| +|+++|+||+.
T Consensus        72 -------~~~~~---------~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~  131 (157)
T 2emq_A           72 -------LERIE---------FERLETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRR  131 (157)
T ss_dssp             -------SSSBC---------GGGGGTCBGGGTCBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHH
T ss_pred             -------ccccc---------hHHhcCCcHHHHhCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHH
Confidence                   00000         012235678999977  89999999999999999999987  99999 79999999999


Q ss_pred             HHHHHHHHc
Q 041090          270 DVLMRVVAQ  278 (294)
Q Consensus       270 Dil~~~~~~  278 (294)
                      ||++.+...
T Consensus       132 dil~~~~~~  140 (157)
T 2emq_A          132 EVLKQLNKQ  140 (157)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999655443

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.68  E-value=1.6e-16  Score=128.17  Aligned_cols=122  Identities=20%  Similarity=0.223  Sum_probs=105.7

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      ..+++++|.++++++.+++++.+++++|.+++++.+||++ +|+++|+++..|++......                   
T Consensus         8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~-------------------   68 (184)
T 1pvm_A            8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPR-------------------   68 (184)
T ss_dssp             CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGG-------------------
T ss_pred             ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc-------------------
Confidence            4689999999999999999999999999999999999999 89999999999997643210                   


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                       .......++.++|.+  ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||..||++
T Consensus        69 -----------------~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~  129 (184)
T 1pvm_A           69 -----------------NKKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSR  129 (184)
T ss_dssp             -----------------CCCGGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTT
T ss_pred             -----------------ccCcccCCHHHHhCC--CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHH
Confidence                             001234578999977  899999999999999999999999999999 599999999999995


Q ss_pred             HH
Q 041090          274 RV  275 (294)
Q Consensus       274 ~~  275 (294)
                      .+
T Consensus       130 ~~  131 (184)
T 1pvm_A          130 YL  131 (184)
T ss_dssp             TS
T ss_pred             HH
Confidence            43

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.67  E-value=1.3e-16  Score=125.52  Aligned_cols=128  Identities=12%  Similarity=0.160  Sum_probs=105.5

Q ss_pred             Cccccccccccc--CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHH
Q 041090          114 PDQTVVSKIMTR--NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAV  190 (294)
Q Consensus       114 ~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~  190 (294)
                      ....+++++|.+  +++++.+++++.++++.|.+++++.+||+| +|+++|+++..|++......               
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~---------------   75 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL---------------   75 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS---------------
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhh---------------
Confidence            446789999987  889999999999999999999999999999 78999999999997643210               


Q ss_pred             HHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehh
Q 041090          191 EGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSK  269 (294)
Q Consensus       191 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~  269 (294)
                              ..+         -.......++.++|.+  ++.++.+++++.+|+++|.+.++  +||+| +|+++|+||+.
T Consensus        76 --------~~~---------~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~  134 (159)
T 1yav_A           76 --------ERI---------EFEKLDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRR  134 (159)
T ss_dssp             --------SSB---------CGGGTTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHH
T ss_pred             --------ccc---------chhhhccCCHHHhcCC--CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHH
Confidence                    000         0011234679999977  89999999999999999998877  99999 89999999999


Q ss_pred             HHHHHHHH
Q 041090          270 DVLMRVVA  277 (294)
Q Consensus       270 Dil~~~~~  277 (294)
                      ||++.+..
T Consensus       135 dil~~~~~  142 (159)
T 1yav_A          135 VVLKELNK  142 (159)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99955443

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.66  E-value=2.7e-16  Score=129.90  Aligned_cols=119  Identities=17%  Similarity=0.173  Sum_probs=104.6

Q ss_pred             CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      .....++++|..+++++.+++++.+++++|.+++++.+||+| +++++|+++..|++...                    
T Consensus        10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~--------------------   69 (213)
T 1vr9_A           10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD--------------------   69 (213)
T ss_dssp             ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC--------------------
T ss_pred             ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhc--------------------
Confidence            346688999999999999999999999999999999999999 89999999999985321                    


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHH
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDV  271 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Di  271 (294)
                                             ...++.++|.+  ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||.+|+
T Consensus        70 -----------------------~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Di  124 (213)
T 1vr9_A           70 -----------------------LDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDF  124 (213)
T ss_dssp             -----------------------TTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHH
T ss_pred             -----------------------CCCcHHHHccC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHH
Confidence                                   13568999977  899999999999999999999999999999 5999999999999


Q ss_pred             HHHHHH
Q 041090          272 LMRVVA  277 (294)
Q Consensus       272 l~~~~~  277 (294)
                      ++.+..
T Consensus       125 l~~~~~  130 (213)
T 1vr9_A          125 LEALIE  130 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            965544

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.65  E-value=5e-16  Score=133.96  Aligned_cols=121  Identities=15%  Similarity=0.253  Sum_probs=107.0

Q ss_pred             CCCcccccccccccCCeEEcCCCcHHHHHHHHHhC-----CCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchh
Q 041090          112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQG-----KFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSA  185 (294)
Q Consensus       112 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~  185 (294)
                      ......+++++|.++++++.+++++.++++.|.++     +++++||+| +|+++|+|+..|++..              
T Consensus       132 l~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~--------------  197 (286)
T 2oux_A          132 LHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN--------------  197 (286)
T ss_dssp             TTSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS--------------
T ss_pred             hcCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC--------------
Confidence            35567899999999999999999999999999986     788899999 8999999999998642              


Q ss_pred             HHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeE
Q 041090          186 IAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQG  264 (294)
Q Consensus       186 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vG  264 (294)
                                                   ....++.++|.+  +++++++++++.+|+++|.+++++.+||+| +|+++|
T Consensus       198 -----------------------------~~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvG  246 (286)
T 2oux_A          198 -----------------------------DDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLG  246 (286)
T ss_dssp             -----------------------------CTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEE
T ss_pred             -----------------------------CCCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEE
Confidence                                         123678999977  899999999999999999999999999999 799999


Q ss_pred             eeehhHHHHHHHH
Q 041090          265 ILTSKDVLMRVVA  277 (294)
Q Consensus       265 ivt~~Dil~~~~~  277 (294)
                      +||..||++.+..
T Consensus       247 iIT~~Dil~~i~~  259 (286)
T 2oux_A          247 IVTVDDIIDVIDD  259 (286)
T ss_dssp             EEEHHHHHHHHHH
T ss_pred             EEEHHHHHHHHHH
Confidence            9999999955443

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.64  E-value=1.2e-14  Score=134.41  Aligned_cols=114  Identities=22%  Similarity=0.282  Sum_probs=102.3

Q ss_pred             hhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHHcCCCCccccccccccc-CCeE
Q 041090           53 VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA--NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR-NPIF  129 (294)
Q Consensus        53 v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~-~~~~  129 (294)
                      .++.|..+++++++++|+.+|+++|.+++++.+||+|+  +++++|+||.+|++.      ......++.++|.+ ++++
T Consensus       115 ~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~------~~~~~~~V~~vM~~~~~vt  188 (511)
T 3usb_A          115 SESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF------IQDYSIKISDVMTKEQLIT  188 (511)
T ss_dssp             SSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT------CCCSSSBHHHHCCCCCCCC
T ss_pred             cccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh------hccCCCcHHHhcccCCCEE
Confidence            34556778899999999999999999999999999998  899999999999952      22336789999997 8899


Q ss_pred             EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090          130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA  172 (294)
Q Consensus       130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~  172 (294)
                      +++++++.+++++|.+++++.+||+| +|+++|+||..|+++..
T Consensus       189 v~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~  232 (511)
T 3usb_A          189 APVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI  232 (511)
T ss_dssp             EETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhh
Confidence            99999999999999999999999999 99999999999998753

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.64  E-value=2.9e-16  Score=149.33  Aligned_cols=123  Identities=19%  Similarity=0.129  Sum_probs=105.0

Q ss_pred             cccchhcccc--CCceeecCCCCHHHHHHHHH-hCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCC------------
Q 041090           49 GERTVKKLRL--SKALTIPEGTIVSDACRRMA-SRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLR------------  113 (294)
Q Consensus        49 ~~~~v~dl~~--~~~~~v~~~~sv~~a~~~~~-~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~------------  113 (294)
                      .+++|+|+|.  ++++++++++++.|+.+.|. +++++.+||+|++++++|++|.+|+++.+..+...            
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence            6789999999  89999999999999999999 79999999999999999999999997433211000            


Q ss_pred             ----------------------------------CcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEE
Q 041090          114 ----------------------------------PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEV  159 (294)
Q Consensus       114 ----------------------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~  159 (294)
                                                        ....+++++|.++++++++++++.++++.|.+++++++||+++|++
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve~G~l  610 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKL  610 (632)
T ss_dssp             ----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEETTEE
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEECCEE
Confidence                                              0011378899999999999999999999999999999999999999


Q ss_pred             EEEEehHHHHHH
Q 041090          160 IAILDITKCLYD  171 (294)
Q Consensus       160 vGivt~~dll~~  171 (294)
                      +|+||..|+++.
T Consensus       611 vGIVT~~Dll~~  622 (632)
T 3org_A          611 VGIVEREDVAYG  622 (632)
T ss_dssp             EEEEEGGGTEEC
T ss_pred             EEEEehhhHHHH
Confidence            999999999764

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.64  E-value=2.9e-15  Score=137.71  Aligned_cols=121  Identities=21%  Similarity=0.333  Sum_probs=109.7

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccc
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKI  122 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~-----~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~  122 (294)
                      +.+.+++++|+++++++++++|+.+|++.|.++     +++.+||+|++++++|++|.+|++..       ....+++++
T Consensus       152 ~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~-------~~~~~v~di  224 (473)
T 2zy9_A          152 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------DPRTRVAEI  224 (473)
T ss_dssp             SCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS-------CTTSBGGGT
T ss_pred             CCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC-------CCCCcHHHH
Confidence            456788999999999999999999999999986     57899999999999999999999741       236789999


Q ss_pred             cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090          123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR  175 (294)
Q Consensus       123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~  175 (294)
                      |.++++++++++++.++++.|.+++.+.+||+| +|+++|+||..|+++.....
T Consensus       225 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          225 MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             SBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             hCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence            998999999999999999999999999999999 89999999999999876554

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.63  E-value=1.3e-15  Score=130.89  Aligned_cols=118  Identities=19%  Similarity=0.249  Sum_probs=104.4

Q ss_pred             CcccccccccccCCeEEcCCCcHHHHHHHHHhC-----CCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHH
Q 041090          114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQG-----KFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIA  187 (294)
Q Consensus       114 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~  187 (294)
                      +...+++++|.++++++.+++++.++++.|.+.     ++..+||++ +|+++|+|+..|++..                
T Consensus       132 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----------------  195 (278)
T 2yvy_A          132 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA----------------  195 (278)
T ss_dssp             SCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS----------------
T ss_pred             CCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC----------------
Confidence            346789999999999999999999999999876     789999999 8999999999998742                


Q ss_pred             HHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEee
Q 041090          188 AAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGIL  266 (294)
Q Consensus       188 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGiv  266 (294)
                                                 ....++.++|.+  +++++++++++.+|+++|.+++++.+||+| +|+++|+|
T Consensus       196 ---------------------------~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiv  246 (278)
T 2yvy_A          196 ---------------------------DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIV  246 (278)
T ss_dssp             ---------------------------CTTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEE
T ss_pred             ---------------------------CCCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEE
Confidence                                       123678999977  899999999999999999999999999999 79999999


Q ss_pred             ehhHHHHHHH
Q 041090          267 TSKDVLMRVV  276 (294)
Q Consensus       267 t~~Dil~~~~  276 (294)
                      |..||++.+.
T Consensus       247 T~~Dil~~i~  256 (278)
T 2yvy_A          247 TVDDVLDVLE  256 (278)
T ss_dssp             EHHHHHHHC-
T ss_pred             EHHHHHHHHH
Confidence            9999995443

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.56  E-value=1e-14  Score=136.07  Aligned_cols=123  Identities=18%  Similarity=0.261  Sum_probs=105.6

Q ss_pred             ccccccccccCCeEEcCC-CcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSD-SLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~-~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      ..+++++|.++++++.++ +++.+++++|.+++++++||+|  +++++|+||..||++.+...                 
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~-----------------  445 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM-----------------  445 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH-----------------
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc-----------------
Confidence            578999999999999999 9999999999999999999999  78999999999998765431                 


Q ss_pred             HHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeC-----CeEeEeee
Q 041090          193 VERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTG-----SKIQGILT  267 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----g~~vGivt  267 (294)
                                          ......++.++|.+  +++++.+++++.+++++|.++++  +||+|+     |+++||||
T Consensus       446 --------------------~~~~~~~V~~im~~--~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT  501 (527)
T 3pc3_A          446 --------------------NRQQSDPAIKALNK--RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALAT  501 (527)
T ss_dssp             --------------------CCCTTSBGGGGEET--TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEE
T ss_pred             --------------------cCcCCCcHHHHhcC--CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEE
Confidence                                11234679999977  99999999999999999976654  799984     89999999


Q ss_pred             hhHHHHHHHHcc
Q 041090          268 SKDVLMRVVAQN  279 (294)
Q Consensus       268 ~~Dil~~~~~~~  279 (294)
                      +.||++.+....
T Consensus       502 ~~Dll~~l~~~~  513 (527)
T 3pc3_A          502 KLDVTTFIAAGK  513 (527)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHhcc
Confidence            999996665544

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.56  E-value=6.8e-16  Score=142.87  Aligned_cols=115  Identities=20%  Similarity=0.202  Sum_probs=1.8

Q ss_pred             hhcc-ccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHHHcCCCCcccccccccccC--
Q 041090           53 VKKL-RLSKALTIPEGTIVSDACRRMASRRVDAVLLTDAN---ALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN--  126 (294)
Q Consensus        53 v~dl-~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~---~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~--  126 (294)
                      ..++ |.++++++++++|+.+|+++|.+++++.+||+|++   ++++|+||.+|+++.     ......+++++|.++  
T Consensus        98 ~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-----~~~~~~~V~diM~~~~~  172 (503)
T 1me8_A           98 NFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-----LTQTETKVSDMMTPFSK  172 (503)
T ss_dssp             TTTC----------------------------------------------------------------------------
T ss_pred             hcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-----hccccCcHHHHhCCCCC
Confidence            3444 99999999999999999999999999999999987   899999999999632     122356899999877  


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA  172 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~  172 (294)
                      ++++++++++.+++++|.+++++.+||+| +|+++|+||..|+++..
T Consensus       173 ~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~  219 (503)
T 1me8_A          173 LVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQ  219 (503)
T ss_dssp             -----------------------------------------------
T ss_pred             CEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhh
Confidence            89999999999999999999999999999 89999999999998754

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.55  E-value=1.2e-14  Score=133.50  Aligned_cols=120  Identities=20%  Similarity=0.265  Sum_probs=105.8

Q ss_pred             CCcccccccccccCCeEEcCCCcHHHHHHHHHhC-----CCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhH
Q 041090          113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQG-----KFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAI  186 (294)
Q Consensus       113 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~  186 (294)
                      .+.+.+++++|.++++++++++++.++++.|.+.     ++.++||+| +++++|+++..|++..               
T Consensus       151 ~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~---------------  215 (473)
T 2zy9_A          151 RYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---------------  215 (473)
T ss_dssp             TSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---------------
T ss_pred             cCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---------------
Confidence            4456789999999999999999999999999875     478999999 8999999999998742               


Q ss_pred             HHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEe
Q 041090          187 AAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGI  265 (294)
Q Consensus       187 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGi  265 (294)
                                                  ....++.++|.+  +++++++++++.+++++|.+++++.+||+| +|+++|+
T Consensus       216 ----------------------------~~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGi  265 (473)
T 2zy9_A          216 ----------------------------DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGI  265 (473)
T ss_dssp             ----------------------------CTTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred             ----------------------------CCCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEE
Confidence                                        123679999977  899999999999999999999999999999 7999999


Q ss_pred             eehhHHHHHHHH
Q 041090          266 LTSKDVLMRVVA  277 (294)
Q Consensus       266 vt~~Dil~~~~~  277 (294)
                      ||..|+++.+..
T Consensus       266 IT~~Dil~~i~~  277 (473)
T 2zy9_A          266 VTVDDVLDVLEA  277 (473)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             EehHhhHHHHHH
Confidence            999999965543

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.53  E-value=1.6e-14  Score=97.18  Aligned_cols=65  Identities=32%  Similarity=0.551  Sum_probs=61.8

Q ss_pred             ceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHHHHccCCCCcceeeecccc
Q 041090          229 KVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVAQNLSPELTLVERFIMR  293 (294)
Q Consensus       229 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~~~~~~~~~~~~v~~~~~~  293 (294)
                      +++++.+++++.+|+++|.+++++++||+|+|+++||+|.+|++++++..+.++...+|+++|++
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~   65 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTK   65 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEE
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCC
Confidence            36889999999999999999999999999999999999999999999999999999999999974

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.51  E-value=4.6e-15  Score=141.10  Aligned_cols=155  Identities=13%  Similarity=0.078  Sum_probs=102.9

Q ss_pred             cccccccccc--cCCeEEcCCCcHHHHHHHHH-hCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhc--hhHHH
Q 041090          115 DQTVVSKIMT--RNPIFVTSDSLAIEALQKMV-QGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQG--SAIAA  188 (294)
Q Consensus       115 ~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~-~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~--~~~~~  188 (294)
                      ...+++++|.  +++.++++++++.++.+.|. +++++.+||+| +++++|+|+..|+++.............  .....
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence            3578999999  88899999999999999999 79999999999 8999999999999875433211100000  00000


Q ss_pred             HHHHHHHhhCCCCCChhhhH---------HHHHHh-hcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee
Q 041090          189 AVEGVERQWGSNFSAPYAFI---------ETLRER-MFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT  258 (294)
Q Consensus       189 ~~~~~~~~~g~~~~~~~~~~---------~~~~~~-~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  258 (294)
                      ...  .+.............         +..... ....++.++|.+  +++++++++++.+++++|.+++++.+||++
T Consensus       531 ~~~--~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVve  606 (632)
T 3org_A          531 LLD--AADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVTE  606 (632)
T ss_dssp             ------------------------------------------CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEEE
T ss_pred             ccC--HHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEEE
Confidence            000  000000000000000         000000 001137889977  999999999999999999999999999999


Q ss_pred             CCeEeEeeehhHHHH
Q 041090          259 GSKIQGILTSKDVLM  273 (294)
Q Consensus       259 ~g~~vGivt~~Dil~  273 (294)
                      +|+++|+||++|+++
T Consensus       607 ~G~lvGIVT~~Dll~  621 (632)
T 3org_A          607 RGKLVGIVEREDVAY  621 (632)
T ss_dssp             TTEEEEEEEGGGTEE
T ss_pred             CCEEEEEEehhhHHH
Confidence            999999999999984

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.51  E-value=1.8e-13  Score=126.72  Aligned_cols=116  Identities=19%  Similarity=0.223  Sum_probs=105.7

Q ss_pred             chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc-CCe
Q 041090           52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTD--ANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR-NPI  128 (294)
Q Consensus        52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d--~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~-~~~  128 (294)
                      .++++|.++++++++++++.+|++.|.+++++.+||+|  ++++++|+||.+|++..     . ....++.++|.+ +++
T Consensus        91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~-----~-~~~~~v~~im~~~~~~  164 (491)
T 1zfj_A           91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI-----S-DYNAPISEHMTSEHLV  164 (491)
T ss_dssp             HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----S-CSSSBTTTSCCCSCCC
T ss_pred             hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-----c-cCCCcHHHHcCCCCCE
Confidence            46889999999999999999999999999999999999  78999999999999632     1 236789999988 888


Q ss_pred             EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                      ++++++++.++++.|.+++++.+||+| +|+++|++|..|+++...
T Consensus       165 ~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          165 TAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             CEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence            999999999999999999999999999 899999999999998754

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.49  E-value=1.5e-14  Score=133.30  Aligned_cols=114  Identities=15%  Similarity=0.193  Sum_probs=90.2

Q ss_pred             chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc-c-CCeE
Q 041090           52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT-R-NPIF  129 (294)
Q Consensus        52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~-~~~~  129 (294)
                      +++++|..+++++++++|+.+|+++|.+++++.+||+|++++++|+||.+|++.      ......++.++|. . ++++
T Consensus        90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~------~~~~~~~v~diM~p~~~~vt  163 (496)
T 4fxs_A           90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRF------VTDLTKSVAAVMTPKERLAT  163 (496)
T ss_dssp             HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTT------CCCTTSBGGGTSEEGGGCCE
T ss_pred             ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhh------cccCCCcHHHHhcCCCCCEE
Confidence            456789999999999999999999999999999999999999999999999951      1233678999998 4 5889


Q ss_pred             EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090          130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD  171 (294)
Q Consensus       130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~  171 (294)
                      +++++++.+++++|.+++++.+||+| +|+++|+||..|+++.
T Consensus       164 v~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          164 VKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             EECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----
T ss_pred             ECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHh
Confidence            99999999999999999999999999 8999999999999875

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.46  E-value=1.3e-13  Score=92.63  Aligned_cols=70  Identities=26%  Similarity=0.535  Sum_probs=62.7

Q ss_pred             CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090           60 KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        60 ~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  130 (294)
                      +++++.+++|+.+|+++|.+++++++||+| +|+++|++|.+||+++++.++.+....+++++|.++++++
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            467899999999999999999999999998 6899999999999888877777777789999999887653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.42  E-value=1.5e-14  Score=133.94  Aligned_cols=116  Identities=17%  Similarity=0.288  Sum_probs=5.5

Q ss_pred             chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCccccccccccc--CCeE
Q 041090           52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR--NPIF  129 (294)
Q Consensus        52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~  129 (294)
                      +++++|.++++++.+++++.+|+++|.+++++.+||+|++++++|+||.+|+++.      .....++.++|.+  ++++
T Consensus        96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~------~~~~~~v~~im~~~~~~~~  169 (494)
T 1vrd_A           96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE------KNLSKKIKDLMTPREKLIV  169 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhh------cCCCCcHHHHhCCCCCCeE
Confidence            4688899999999999999999999999999999999988999999999999631      1135689999987  8999


Q ss_pred             EcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          130 VTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       130 v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                      +.+++++.+++++|.+++++.+||+| +|+++|++|..|+++...
T Consensus       170 v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          170 APPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             ---------------------------------------CHHHHT
T ss_pred             ECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence            99999999999999999999999999 899999999999998754

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.41  E-value=7e-14  Score=128.78  Aligned_cols=114  Identities=15%  Similarity=0.185  Sum_probs=3.2

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc-c-CCe
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT-R-NPI  128 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~-~-~~~  128 (294)
                      .+++++|..+++++++++|+.+|+++|.+++++.+||+| +++++|+||.+|+.. .     .....++.++|. + +++
T Consensus        88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~-~-----~~~~~~V~~vMtp~~~~v  160 (490)
T 4avf_A           88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRV-K-----PNAGDTVAAIMTPKDKLV  160 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhh-c-----cccCCcHHHHhccCCCCE
Confidence            356788999999999999999999999999999999999 899999999999942 1     123568999998 4 689


Q ss_pred             EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090          129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD  171 (294)
Q Consensus       129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~  171 (294)
                      ++++++++.+++++|.+++++.+||+| +|+++|+||..|+++.
T Consensus       161 tv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~  204 (490)
T 4avf_A          161 TAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKA  204 (490)
T ss_dssp             --------------------------------------------
T ss_pred             EECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhh
Confidence            999999999999999999999999999 8999999999999875

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.39  E-value=1.1e-12  Score=121.24  Aligned_cols=117  Identities=16%  Similarity=0.295  Sum_probs=101.1

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      ...+.|..+++++.+++++.+++++|.+++++++||++   +++++|+|+..||..                        
T Consensus       114 ~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~------------------------  169 (511)
T 3usb_A          114 RSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF------------------------  169 (511)
T ss_dssp             TSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT------------------------
T ss_pred             ccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh------------------------
Confidence            34566777889999999999999999999999999998   579999999999852                        


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                        ......++.++|.+ .+++++++++++.+++++|.+++++.+||+| +|+++|+||.+|+++
T Consensus       170 ------------------~~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~  230 (511)
T 3usb_A          170 ------------------IQDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEK  230 (511)
T ss_dssp             ------------------CCCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred             ------------------hccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHH
Confidence                              01234678999963 3789999999999999999999999999999 899999999999996


Q ss_pred             HHHH
Q 041090          274 RVVA  277 (294)
Q Consensus       274 ~~~~  277 (294)
                      .+..
T Consensus       231 ~~~~  234 (511)
T 3usb_A          231 VIEF  234 (511)
T ss_dssp             HHHC
T ss_pred             hhhc
Confidence            6544

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.38  E-value=4.1e-14  Score=128.09  Aligned_cols=109  Identities=22%  Similarity=0.269  Sum_probs=0.0

Q ss_pred             cccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcC
Q 041090           56 LRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTS  132 (294)
Q Consensus        56 l~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~  132 (294)
                      .|..+++++.|+.||.+|+++|.+++++.+||+|+   +++++||+|.+|+. .     .+ ...+++++|.+++++++.
T Consensus       143 g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r-f-----~d-~~~~V~evMT~~lvt~~~  215 (556)
T 4af0_A          143 GFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ-F-----QD-AETPIKSVMTTEVVTGSS  215 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc-c-----cc-cceEhhhhcccceEEecC
Confidence            35568899999999999999999999999999986   68999999999983 2     12 257899999999999999


Q ss_pred             CCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090          133 DSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD  171 (294)
Q Consensus       133 ~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~  171 (294)
                      +.++.+|.++|.++++..+||+| +++++|+||..|+++.
T Consensus       216 ~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          216 PITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             ----------------------------------------
T ss_pred             CCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhh
Confidence            99999999999999999999999 9999999999999864

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.36  E-value=2.2e-13  Score=125.62  Aligned_cols=116  Identities=20%  Similarity=0.325  Sum_probs=88.5

Q ss_pred             cccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090          117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER  195 (294)
Q Consensus       117 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (294)
                      ..+.++|..+++++++++++.+++++|.+++++.+||++ +++++|+||..||+..                        
T Consensus        89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~------------------------  144 (496)
T 4fxs_A           89 KIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV------------------------  144 (496)
T ss_dssp             HHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC------------------------
T ss_pred             cccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc------------------------
Confidence            355677888999999999999999999999999999999 8999999999998510                        


Q ss_pred             hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                                        .....++.++|.+..+++++++++++.+++++|.+++++.+||+| +|+++|+||++|+++.
T Consensus       145 ------------------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          145 ------------------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             ------------------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----
T ss_pred             ------------------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHh
Confidence                              113467899997212489999999999999999999999999999 8999999999999954

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.34  E-value=8.3e-14  Score=128.29  Aligned_cols=117  Identities=24%  Similarity=0.330  Sum_probs=3.1

Q ss_pred             cccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q 041090          117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQ  196 (294)
Q Consensus       117 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (294)
                      ..++++|..+++++++++++.+++++|.+++++.+||+++++++|+||..||....                        
T Consensus        88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~------------------------  143 (490)
T 4avf_A           88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKP------------------------  143 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhcc------------------------
Confidence            45677888889999999999999999999999999999988999999999985210                        


Q ss_pred             hCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090          197 WGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV  275 (294)
Q Consensus       197 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~  275 (294)
                                        ....++.++|.+..+++++++++++.+++++|.+++++.+||+| +|+++|+||++|+++..
T Consensus       144 ------------------~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          144 ------------------NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhc
Confidence                              12356889996212599999999999999999999999999999 89999999999999554

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.33  E-value=3.1e-13  Score=124.70  Aligned_cols=111  Identities=25%  Similarity=0.435  Sum_probs=1.5

Q ss_pred             chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEc
Q 041090           52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVT  131 (294)
Q Consensus        52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~  131 (294)
                      .+.++|..+++++++++++.+++++|.+++++.+||+|+ ++++|+++.+|++.       . ...++.++|.+++++++
T Consensus        94 ~~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~-------~-~~~~v~~im~~~~~~v~  164 (486)
T 2cu0_A           94 RAERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA-------R-EGKLVKELMTKEVITVP  164 (486)
T ss_dssp             TCC-----------------------------------------------------------------------------
T ss_pred             chhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc-------C-CCCCHHHHccCCCeEEC
Confidence            346788889999999999999999999999999999997 99999999999963       1 35689999988888999


Q ss_pred             CCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090          132 SDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD  171 (294)
Q Consensus       132 ~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~  171 (294)
                      +++++.++++.|.+++++.+||+| +|+++|++|..|+++.
T Consensus       165 ~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~  205 (486)
T 2cu0_A          165 ESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVAR  205 (486)
T ss_dssp             -----------------------------------------
T ss_pred             CcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHh
Confidence            999999999999999999999999 8999999999999864

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.32  E-value=1.6e-13  Score=126.99  Aligned_cols=114  Identities=16%  Similarity=0.164  Sum_probs=0.0

Q ss_pred             cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C---CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhC
Q 041090          123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N---GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG  198 (294)
Q Consensus       123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  198 (294)
                      |.++++++++++++.+++++|.+++++++||++ +   ++++|+|+..|++..  .                        
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~------------------------  156 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L------------------------  156 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h------------------------
Confidence            778899999999999999999999999999999 5   899999999999742  0                        


Q ss_pred             CCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHH
Q 041090          199 SNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVA  277 (294)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~  277 (294)
                                     .....++.++|.+..+++++++++++.+|+++|.+++++.+||+| +|+++|+||.+||++.+..
T Consensus       157 ---------------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~  221 (503)
T 1me8_A          157 ---------------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVC  221 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhc
Confidence                           012356889997722399999999999999999999999999999 8999999999999966654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.31  E-value=1.3e-11  Score=114.28  Aligned_cols=116  Identities=18%  Similarity=0.306  Sum_probs=100.6

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      .+.++|..+++++.+++++.++++.|.+++++.+||++   +++++|+|+..|++..                       
T Consensus        91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~-----------------------  147 (491)
T 1zfj_A           91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI-----------------------  147 (491)
T ss_dssp             HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----------------------
T ss_pred             hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-----------------------
Confidence            35678888999999999999999999999999999997   6899999999998642                       


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                         .....++.++|.+ .+++++++++++.+++++|.+++++.+||+| +|+++|+||+.||++
T Consensus       148 -------------------~~~~~~v~~im~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~  207 (491)
T 1zfj_A          148 -------------------SDYNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEK  207 (491)
T ss_dssp             -------------------SCSSSBTTTSCCC-SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred             -------------------ccCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHH
Confidence                               0123678899952 2688999999999999999999999999999 899999999999995


Q ss_pred             HHH
Q 041090          274 RVV  276 (294)
Q Consensus       274 ~~~  276 (294)
                      .+.
T Consensus       208 ~~~  210 (491)
T 1zfj_A          208 VIE  210 (491)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.29  E-value=2.6e-13  Score=125.61  Aligned_cols=118  Identities=22%  Similarity=0.380  Sum_probs=5.6

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQ  196 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (294)
                      .+.++|.++++++.+++++.++++.|.+++++.+||+| +++++|+||..|++...                        
T Consensus        96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~------------------------  151 (494)
T 1vrd_A           96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK------------------------  151 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc------------------------
Confidence            45678888999999999999999999999999999999 78999999999986410                        


Q ss_pred             hCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090          197 WGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV  275 (294)
Q Consensus       197 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~  275 (294)
                                        ....++.++|.+..++.++.+++++.+++++|.+++++.+||+| +|+++|+||..|+++.+
T Consensus       152 ------------------~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  213 (494)
T 1vrd_A          152 ------------------NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI  213 (494)
T ss_dssp             ---------------------------------------------------------------------------CHHHH
T ss_pred             ------------------CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhh
Confidence                              01246888885333789999999999999999999999999999 89999999999999665


Q ss_pred             HH
Q 041090          276 VA  277 (294)
Q Consensus       276 ~~  277 (294)
                      ..
T Consensus       214 ~~  215 (494)
T 1vrd_A          214 EH  215 (494)
T ss_dssp             TC
T ss_pred             cc
Confidence            43

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.24  E-value=6.8e-13  Score=120.19  Aligned_cols=110  Identities=15%  Similarity=0.248  Sum_probs=0.0

Q ss_pred             ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhh
Q 041090          122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQW  197 (294)
Q Consensus       122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (294)
                      .+..+|+++.++.++.+++++|.+++++.+||+++    ++++||+|.+|+...                          
T Consensus       143 g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--------------------------  196 (556)
T 4af0_A          143 GFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--------------------------  196 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--------------------------
Confidence            35568899999999999999999999999999983    689999999997421                          


Q ss_pred             CCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090          198 GSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV  276 (294)
Q Consensus       198 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~  276 (294)
                                       ....++.++|.+  ++++++.+.++.+|.++|.++++..+|||| +|+++|+||++|+++.-.
T Consensus       197 -----------------d~~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          197 -----------------DAETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------ccceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence                             012578999987  899999999999999999999999999999 899999999999985443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.22  E-value=1.6e-13  Score=127.60  Aligned_cols=118  Identities=21%  Similarity=0.313  Sum_probs=69.5

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCccccccccccc--
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR--  125 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~--  125 (294)
                      .++.++|.++++++.+++++.+|+++|.+++++.+||+|+   +++++|+||.+|+.. .. .  .....++.++|.+  
T Consensus       108 ~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~-~~-~--~~~~~~v~~vm~~~~  183 (514)
T 1jcn_A          108 KNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDF-LA-E--KDHTTLLSEVMTPRI  183 (514)
T ss_dssp             HTCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------CCB
T ss_pred             hhhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHh-hh-h--ccCCCCHHHHhCCCC
Confidence            3567899999999999999999999999999999999997   589999999999953 21 0  1235689999988  


Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA  172 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~  172 (294)
                      +++++.+++++.+++++|.+++++.+||+| +|+++|++|..|+++..
T Consensus       184 ~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          184 ELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             CCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             CCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence            899999999999999999999999999999 89999999999987643

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.13  E-value=4.9e-12  Score=116.70  Aligned_cols=109  Identities=26%  Similarity=0.297  Sum_probs=0.4

Q ss_pred             ccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCC
Q 041090          120 SKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGS  199 (294)
Q Consensus       120 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  199 (294)
                      .+.|..+++++.+++++.++++.|.+++++++||+++++++|+|+..|++.   .                         
T Consensus        96 ~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~---~-------------------------  147 (486)
T 2cu0_A           96 ERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAA---R-------------------------  147 (486)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             hhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhcc---C-------------------------
Confidence            446777888999999999999999999999999999889999999999863   0                         


Q ss_pred             CCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          200 NFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                                      ...++.++|.+  +++++++++++.+++++|.+++++.+||+| +|+++|+||..||++.
T Consensus       148 ----------------~~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~  205 (486)
T 2cu0_A          148 ----------------EGKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVAR  205 (486)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             ----------------CCCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHh
Confidence                            12468888976  899999999999999999999999999999 8999999999999954

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.11  E-value=1.9e-12  Score=120.39  Aligned_cols=131  Identities=13%  Similarity=0.208  Sum_probs=74.5

Q ss_pred             eHHHHHHHHHHcCCCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEEC----CEEEEEEehHHHHHHHHH
Q 041090           99 TDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVEN----GEVIAILDITKCLYDAIS  174 (294)
Q Consensus        99 t~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~vGivt~~dll~~~~~  174 (294)
                      +..++...+ .+     ...+.++|.++++++.+++++.+++++|.+++++.+||+|+    ++++|+||..|+..... 
T Consensus        96 t~e~~~~~v-~~-----v~~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~-  168 (514)
T 1jcn_A           96 TPEFQANEV-RK-----VKNFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE-  168 (514)
T ss_dssp             CHHHHHHHH-HH-----HHTCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-----
T ss_pred             CHHHHHHHH-Hh-----hhhhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh-
Confidence            667665332 11     23577888888999999999999999999999999999984    79999999999864210 


Q ss_pred             HHHHHHhhchhHHHHHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCcee
Q 041090          175 RMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSA  254 (294)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l  254 (294)
                                                             .....++.++|.+..+++++.+++++.+++++|.+++++.+
T Consensus       169 ---------------------------------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~l  209 (514)
T 1jcn_A          169 ---------------------------------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKL  209 (514)
T ss_dssp             ---------------------------------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCC
T ss_pred             ---------------------------------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcc
Confidence                                                   01235688888532378999999999999999999999999


Q ss_pred             EEee-CCeEeEeeehhHHHHHH
Q 041090          255 LIVT-GSKIQGILTSKDVLMRV  275 (294)
Q Consensus       255 pVvd-~g~~vGivt~~Dil~~~  275 (294)
                      ||+| +|+++|+||++|+++.+
T Consensus       210 pVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          210 PIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             CEESSSSCCC----CCCCSSCC
T ss_pred             cEECCCCeEEEEEEHHHHHHHh
Confidence            9999 89999999999998443

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.57  E-value=4.5e-08  Score=81.94  Aligned_cols=58  Identities=14%  Similarity=0.189  Sum_probs=50.8

Q ss_pred             cccchhcccc-CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 041090           49 GERTVKKLRL-SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTR  106 (294)
Q Consensus        49 ~~~~v~dl~~-~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~  106 (294)
                      ...+|+++|+ ++++++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|++++
T Consensus       183 ~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~  241 (245)
T 3l2b_A          183 QSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIST  241 (245)
T ss_dssp             GGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-----
T ss_pred             cCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhch
Confidence            4678999999 899999999999999999999999999999999999999999999753

>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1

Probab=82.13  E-value=3.3  Score=27.35  Aligned_cols=40  Identities=18%  Similarity=0.242  Sum_probs=30.9

Q ss_pred             ceeEEee-CCeEeEeeehhHHHHHHHHccC------CCCcceeeecc
Q 041090          252 NSALIVT-GSKIQGILTSKDVLMRVVAQNL------SPELTLVERFI  291 (294)
Q Consensus       252 ~~lpVvd-~g~~vGivt~~Dil~~~~~~~~------~~~~~~v~~~~  291 (294)
                      ..+-+++ +|..+|++++.+.++..-..++      +.-.+||=++|
T Consensus        14 ~eVrli~~~Ge~lGv~~~~eAl~~A~e~~LDLVevsp~a~PPVCkIm   60 (78)
T 1tif_A           14 REVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIM   60 (78)
T ss_dssp             SEEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEEE
T ss_pred             CEEEEECCCCcCCCcccHHHHHHHHHHcCCCEEEECCCCCCCEEEEe
Confidence            3466777 8999999999999977777777      33466777777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	2e-15
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	6e-13
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-05
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	8e-13
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	6e-06
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	1e-12
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	3e-07
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	7e-12
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	7e-04
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	4e-11
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	6e-06
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	8e-11
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	4e-07
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	1e-10
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	3e-10
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	2e-07
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	2e-09
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	2e-09
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	8e-07
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	1e-08
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	8e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	2e-08
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	6e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	9e-08
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	1e-07
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	2e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	1e-07
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-07
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	2e-07
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	9e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	4e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	3e-04
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	2e-05
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	9e-05
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	0.001
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	3e-04
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	0.002
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	0.001
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	0.001
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	0.002

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 69.4 bits (169), Expect = 2e-15
 Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 4/127 (3%)

Query: 51  RTVKKLRLSKA---LTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRV 107
           +TVK L   K    + I     V +A ++MA+  + A+L+     L+ GI+T++D + + 
Sbjct: 2   KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLV-GILTERDFSRKS 60

Query: 108 IAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITK 167
                    T V +IMTR   +V  ++   + +  + + + RHLPV+++G+VI +L I  
Sbjct: 61  YLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGD 120

Query: 168 CLYDAIS 174
            + DAIS
Sbjct: 121 LVKDAIS 127

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 19/162 (11%), Positives = 44/162 (27%), Gaps = 41/162 (25%)

Query: 119 VSKIMT---RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISR 175
           V  ++       + +  D     A+QKM       L V+++ +++ IL        +   
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL 63

Query: 176 MEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSP 235
                                                                +VA V  
Sbjct: 64  D--------------------------------------KPVKDTQVKEIMTRQVAYVDL 85

Query: 236 SDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVVA 277
           ++        + E R     ++   K+ G+L+  D++   ++
Sbjct: 86  NNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAIS 127

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 62.5 bits (151), Expect = 6e-13
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 1/128 (0%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
            +K     K L +   T V +A R M    V ++++ + +  + G  T  DI  RVI  G
Sbjct: 6   PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPG 65

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYD 171
           L  D  V   +         +  L    L+KM + + +H+ + E G+++ I  ++  L  
Sbjct: 66  LPYDIPVERIMTRNLITANVNTPLGE-VLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEA 124

Query: 172 AISRMEKA 179
           +  R+E A
Sbjct: 125 SRRRLETA 132

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 24/154 (15%), Positives = 41/154 (26%), Gaps = 38/154 (24%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           +   MT+  + V   +   EA + M++     L V+                        
Sbjct: 7   IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN----------------------- 43

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
                          +      F      I  +        +         +   + + P
Sbjct: 44  ---------------DDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANVNTP 88

Query: 239 VAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272
           +    +KM E R    LI    KI GI T  D+L
Sbjct: 89  LGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLL 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 62.2 bits (150), Expect = 8e-13
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
           T + +  +    + E   ++ A + M    + A+ +   +  L G++TD+DI  + +A G
Sbjct: 2   TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAG 61

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL---DITKC 168
           L P+     ++   +  +V +++   E L  M + + R +PV+    ++ I+   DI + 
Sbjct: 62  LDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARH 121

Query: 169 L 169
           L
Sbjct: 122 L 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.6 bits (99), Expect = 6e-06
 Identities = 18/156 (11%), Positives = 39/156 (25%), Gaps = 37/156 (23%)

Query: 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRM 176
           T    IM      V        A Q M +     LP+  +                    
Sbjct: 1   TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD-------------------- 40

Query: 177 EKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPS 236
                            + +     +     I+ L   +   + +        +  V  +
Sbjct: 41  -----------------DDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDAN 83

Query: 237 DPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272
             +      M E +     +++  ++ GI+T  D+ 
Sbjct: 84  ASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIA 119

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 61.8 bits (149), Expect = 1e-12
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 7/137 (5%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI-------T 104
            V+ +      T+     ++DA   M +  +  V + DAN  L GIV+ +D+        
Sbjct: 3   KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSL 62

Query: 105 TRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILD 164
            R         +T + ++M  +   V   +   E+   M + K   LPVV    ++ I+ 
Sbjct: 63  QRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIIT 122

Query: 165 ITKCLYDAISRMEKAAE 181
            +  +  AI+ +E   E
Sbjct: 123 DSDFVTIAINLLELQEE 139

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 30/154 (19%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           V  +MTR+P  +       +A   M     RH+P+V+           K L   +S+ + 
Sbjct: 4   VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN---------KKLLGIVSQRD- 53

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
                  + AA E   ++     S  +                           V+P   
Sbjct: 54  -------LLAAQESSLQRSAQGDSLAFETPLFEVMHTDVT-------------SVAPQAG 93

Query: 239 VAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272
           +  +A  M++ +     +V    + GI+T  D +
Sbjct: 94  LKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFV 127

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.9 bits (144), Expect = 7e-12
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 13/133 (9%)

Query: 50  ERTVKKLRL---SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTR 106
            +++++L++   +    +   T V  A       RV A+ + D    +  I +  D+   
Sbjct: 8   SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL 67

Query: 107 VIAEGLRPDQTV------VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEV 159
              +                       +           + ++V+ +   L VV E+  V
Sbjct: 68  AAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVV 127

Query: 160 IAIL---DITKCL 169
             I+   DI + L
Sbjct: 128 KGIVSLSDILQAL 140

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 10/60 (16%), Positives = 22/60 (36%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
             +       L       +     R+    V  +++ D + ++ GIV+  DI   ++  G
Sbjct: 85  QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTG 144

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.3 bits (140), Expect = 4e-11
 Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 20/136 (14%)

Query: 59  SKALTIPEGTIVSDACRRMASRRVDAVL-LTDANALLSGIVTDKDITTRVIAEGLRPDQT 117
           SK +       V  A   + +  V A            G++T  D    +          
Sbjct: 23  SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQ 82

Query: 118 V--------------VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV--ENGEVIA 161
           +                +   +  + ++ ++   +A+  +++ K   LPV+  E+G  + 
Sbjct: 83  IYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLY 142

Query: 162 IL---DITKCLYDAIS 174
           IL    I K L   I+
Sbjct: 143 ILTHKRILKFLKLFIT 158

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 16/169 (9%), Positives = 50/169 (29%), Gaps = 31/169 (18%)

Query: 119 VSKIMTRNP--IFVTSDSLAIEALQKMVQGKFRHLPVV--ENGEVIAILDITKCLYDAIS 174
              ++  +   +   +     +A   +V    R  P+   +    + +L IT  +     
Sbjct: 15  CYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFIN---- 70

Query: 175 RMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVS 234
                             +  ++  +       +E  +   ++        +      +S
Sbjct: 71  ------------------ILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVC--IS 110

Query: 235 PSDPVAVAAKKMREFRSNSALIVTGS--KIQGILTSKDVLMRVVAQNLS 281
           P+  +  A   +   + +   ++         ILT K +L + +   ++
Sbjct: 111 PNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRIL-KFLKLFIT 158

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 57.3 bits (137), Expect = 8e-11
 Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 11/156 (7%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISRME 177
           +     R    V   +    AL+ ++      LPVV   G ++ I+D T         + 
Sbjct: 6   IEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDL-------LR 58

Query: 178 KAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSD 237
            +       +  +     +     S P    E    ++    ++ I+T +  V   +P  
Sbjct: 59  DSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIV--ATPHM 116

Query: 238 PVAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVL 272
            V   A KM ++      ++ G   + G++   D+L
Sbjct: 117 TVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.5 bits (109), Expect = 4e-07
 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 33/151 (21%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
            ++         + EGT +  A + +      A+ + D+   L GIV + D+        
Sbjct: 5   EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVR 64

Query: 112 -----------------------------LRPDQTVVSKIMTRNPIFVTSDSLAIEALQK 142
                                        L+     V++IMTR+ I  T      E   K
Sbjct: 65  IMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALK 124

Query: 143 MVQGKFRHLPVV-ENGEVIAIL---DITKCL 169
           M +     LPV+   G++I ++   D+ K L
Sbjct: 125 MAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL 155

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 13/151 (8%)

Query: 53  VKKLRL---SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIA 109
           + ++ +   S   T    T V D  + +A + + AV + ++   L  +    D+   +  
Sbjct: 3   LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD 62

Query: 110 EGLRPDQTVVSKIMT------RNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAI 162
                    V + +              +          +   +   L VV EN ++  I
Sbjct: 63  GDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGI 122

Query: 163 L---DITKCLYDAISRMEKAAEQGSAIAAAV 190
           L   DI   +    +      EQ     +AV
Sbjct: 123 LSLADILNYIIYDKTTTPGVPEQTDNFESAV 153

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 55.8 bits (133), Expect = 3e-10
 Identities = 17/158 (10%), Positives = 40/158 (25%), Gaps = 11/158 (6%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           V  IM R+   + S S   + L  + Q K +  P V+               + +     
Sbjct: 13  VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-----------PDTNTLLGSID 61

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
             E    +   +    RQ               +              +     +     
Sbjct: 62  RTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTS 121

Query: 239 VAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRVV 276
           +            + A + +  K+ G++   ++   + 
Sbjct: 122 LQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIE 159

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 5/65 (7%), Positives = 18/65 (27%), Gaps = 3/65 (4%)

Query: 106 RVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAIL-- 163
           R             +  + ++P  +   +   +              V   G+++ ++  
Sbjct: 92  RWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVAL 151

Query: 164 -DITK 167
            +I  
Sbjct: 152 AEIQA 156

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
            V+K+  S   T+   T V DA + M    +  +++ D N    G+++++ I  R I   
Sbjct: 4   RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRN 63

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITK 167
            +PD+  +  +M +    V SD    +    + +       VV + G V+ I+   D+++
Sbjct: 64  KKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSR 123

Query: 168 CLYDA 172
            L  A
Sbjct: 124 YLSRA 128

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 19/138 (13%)

Query: 51  RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDI------- 103
           + V KL   K   + E T + +   R+    V   +    +  L G++    +       
Sbjct: 4   KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFH 63

Query: 104 -------TTRVIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-E 155
                     + +   R      S+IM  +P++V  D+   EAL+ M+    + +PVV E
Sbjct: 64  FFGFIPKEELIRSSMKRLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDE 122

Query: 156 NGEVIAIL---DITKCLY 170
            GE++  L   +I   L+
Sbjct: 123 KGEIVGDLNSLEILLALW 140

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.7 bits (107), Expect = 8e-07
 Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 25/155 (16%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           V K+++  P  V  D+   E + ++++        V         D        +  + K
Sbjct: 6   VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR-------DNKLVGMIPVMHLLK 58

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
            +          E + R       A     +   E M  P              V    P
Sbjct: 59  VSGFHFFGFIPKEELIRSSMKRLIA-----KNASEIMLDP------------VYVHMDTP 101

Query: 239 VAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVL 272
           +  A K M +       +V    +I G L S ++L
Sbjct: 102 LEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 7/126 (5%)

Query: 50  ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIA 109
           E  VK+   ++ +++ +   ++D  + M  + + +V++ D N  +  I     +      
Sbjct: 3   EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVK---AI 59

Query: 110 EGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DI 165
              +  +T   + MT + I +  DS    AL  M Q   RHLPVV + G +  I+   DI
Sbjct: 60  GKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDI 119

Query: 166 TKCLYD 171
           T+ + D
Sbjct: 120 TRAIDD 125

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 10/55 (18%), Positives = 24/55 (43%)

Query: 115 DQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCL 169
           ++ +V + M    I VT D+   +  + M +     + VV+  + + I+     +
Sbjct: 2   EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV 56

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 53  VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL 112
           VKK        + E   V +   RM   + +  ++ D      G+V  +D+         
Sbjct: 3   VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL------ 56

Query: 113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITKC 168
               + V   ++    FV  +     AL   ++ +  +LPVV E   +   +   D  + 
Sbjct: 57  -DLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEA 115

Query: 169 LYDAIS 174
           L +A++
Sbjct: 116 LIEALA 121

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.5 bits (91), Expect = 6e-05
 Identities = 21/164 (12%), Positives = 42/164 (25%), Gaps = 46/164 (28%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           V K +T++   V   +   E L +M Q +     V +       +   + L D       
Sbjct: 3   VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDS-- 60

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
                                               +F                V   D 
Sbjct: 61  -----------------------------------SVFNKVSLPDFF-------VHEEDN 78

Query: 239 VAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVAQNLS 281
           +  A     E +     +V    +++G ++  D L   + + L+
Sbjct: 79  ITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFL-EALIEALA 121

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 48.1 bits (113), Expect = 9e-08
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 13/137 (9%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTR----- 106
            ++ L +     + +   +  A +++    +  +++ +    + G++T +D+ +      
Sbjct: 2   NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEK--IEGLLTTRDLLSTVESYC 59

Query: 107 ----VIAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIA 161
                  +      T +   MT NP+ V + S    A+  MV   F  LPVV  N + + 
Sbjct: 60  KDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVG 119

Query: 162 ILDITKCLYDAISRMEK 178
           I+   + L      +++
Sbjct: 120 IVTEREFL-LLYKDLDE 135

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 62  LTIPEGTIVSDACRRMASRRVDAVLLT---DANALLSGIVTDKDITTRVIAEGLRPDQTV 118
           + +     V D     A      + +T      + L GI++ +DI      E  R  + +
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEI 66

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAIL---DITK 167
                  + +   +     EA + + + K   LP+V EN E++AI+   D+ K
Sbjct: 67  --MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKK 117

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 17/151 (11%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQ 182
              +P+ ++      +  +   +  F  +P+ + G + +     + +    SR       
Sbjct: 2   FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS-----RLVGIISSRD------ 50

Query: 183 GSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVA 242
                                    I+ L+E      L  I+T+   + +      +  A
Sbjct: 51  -------------------------IDFLKEEEHDRFLEEIMTKREDLVVAPAGITLKEA 85

Query: 243 AKKMREFRSNSALIVTGS-KIQGILTSKDVL 272
            + ++  +     IV  + ++  I+   D+ 
Sbjct: 86  NEILQRSKKGKLPIVNENDELVAIIARTDLK 116

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 17/139 (12%)

Query: 62  LTIPEGTIVSDACRRM-----ASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ 116
           + + EG  V +  R +      +  +  + + D    L G+++ +D+            +
Sbjct: 12  VAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------DPR 64

Query: 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISR 175
           T V++IM    ++V +D+   E  + M    F  LPVV E G ++ I+ +     D +  
Sbjct: 65  TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVD----DVLDV 120

Query: 176 MEKAAEQGSAIAAAVEGVE 194
           +E  A +      AV+  +
Sbjct: 121 LEAEATEDIHKLGAVDVPD 139

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 20/159 (12%), Positives = 53/159 (33%), Gaps = 32/159 (20%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           ++ I   N       +  I+ +Q + QG+   +P+++    +  +     +   I     
Sbjct: 11  LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI----- 65

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
                          +    ++ S         R   F+   +            + +D 
Sbjct: 66  ---------------KGGIYNDLSLSVGEALMRRSDDFEGVYT-----------CTKNDK 99

Query: 239 VAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVV 276
           ++     +R+ R +   +V    ++ G+LT  D+L  ++
Sbjct: 100 LSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 138

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 3/113 (2%)

Query: 66  EGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTR 125
              +V    RR     ++         + + I+   + +         P    +  I+  
Sbjct: 51  SQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPP--LPPYTPPTLKLRNILDL 108

Query: 126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           +P  VT  +     +    +   R   V  NG ++ I+     L   I++M  
Sbjct: 109 SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVL-KHIAQMAN 160

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 21/167 (12%), Positives = 49/167 (29%), Gaps = 28/167 (16%)

Query: 117 TVVSKIMTRNP------IFVTSDSLAIEALQKMVQGKFRHLPVV---ENGEVIAILDITK 167
           T+   +M          +         +    + +  +   PVV   E+  ++  +    
Sbjct: 3   TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRD 62

Query: 168 CLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITE- 226
            +                  +     ++Q G   ++   F E           +  +   
Sbjct: 63  LII-----------------SIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNI 105

Query: 227 -NAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272
            +     V+   P+ +     R+      L+    ++ GI+T KDVL
Sbjct: 106 LDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVL 152

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 39/154 (25%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           V  +M  +   +   +   + L+  V+       VV+ G  + I+     L         
Sbjct: 2   VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEA------- 54

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
                              G + +    +    R+ +                   P   
Sbjct: 55  ----------------IAEGDDLAEVKVWEVMERDLVTIS----------------PRAT 82

Query: 239 VAVAAKKMREFRSNSALIVTGSKIQGILTSKDVL 272
           +  AA+KM +      L+    +I G++++ D+L
Sbjct: 83  IKEAAEKMVKNVVWRLLVEEDDEIIGVISATDIL 116

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRV---- 107
            VK    +K  TI +   +  A + M  R    + + D +  + GIVT  +   ++    
Sbjct: 3   PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAV 62

Query: 108 -IAEGLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAIL-- 163
              +       VV  +M  N + +   +    A  +M+  +   L ++  +  +  I+  
Sbjct: 63  DKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITE 122

Query: 164 -DITKCLYDAISRMEKAAEQ 182
            D+   L+  +  MEK  E+
Sbjct: 123 RDLLIALHHILV-MEKFKEK 141

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 4/122 (3%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           V   M+     +  +    +A++ M++  FR LPV+++   +  +         +++   
Sbjct: 4   VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVD 63

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFK---PSLSTIITENAKVAIVSP 235
             +        V+ V            A +      M      SL  +  +N    I++ 
Sbjct: 64  KLDPDYFYGKVVKDVMVTNLVTID-ELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITE 122

Query: 236 SD 237
            D
Sbjct: 123 RD 124

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 17/126 (13%)

Query: 62  LTIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQ 116
           ++I     V  A   + ++      +  V + D    L G+++ +D+           D 
Sbjct: 12  VSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN-------DDD 64

Query: 117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYDAISR 175
           T+++ I+    I V       +  Q +    F  +PV   +  ++ I+ +     D I  
Sbjct: 65  TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVD----DIIDV 120

Query: 176 MEKAAE 181
           ++  A 
Sbjct: 121 IDDEAA 126

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.1 bits (90), Expect = 9e-05
 Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 53  VKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL 112
           VK +     +TI      + A       +V +  + +                 V    +
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKE-------GKLVGIISVKRILV 55

Query: 113 RPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLYD 171
            PD+  ++ ++ R+   V  +    +A + M++  +R + VV   G+ + IL +   +  
Sbjct: 56  NPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR 115

Query: 172 AISRMEK 178
             ++ EK
Sbjct: 116 YFAKSEK 122

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 45/162 (27%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEK 178
           V  IMT+NP+ +T  +    AL+   + K R  PVV     +  +   K +       + 
Sbjct: 3   VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQL 62

Query: 179 AAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDP 238
           A                                                  V +V  +D 
Sbjct: 63  AMLV--------------------------------------------KRDVPVVKENDT 78

Query: 239 VAVAAKKMREFRSNSALIVTGS-KIQGILTSKDVLMRVVAQN 279
           +  AAK M E+     ++V    K  GILT  D++ R  A++
Sbjct: 79  LKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS 120

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 114 PDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE------NGEVIAIL---D 164
            +       +    I+V      ++A   M + + R +P+++      +  ++++L    
Sbjct: 104 REVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYR 163

Query: 165 ITKCLYDAIS 174
           I K +     
Sbjct: 164 ILKFISMNCK 173

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 20/178 (11%), Positives = 51/178 (28%), Gaps = 31/178 (17%)

Query: 119 VSKIMTRNPIFVTSDSLAI--EALQKMVQGKFRHLPVV--ENGEVIAILDITKCLYDAIS 174
              ++  +   +  D       +L  +        P+   E  +   +L +       ++
Sbjct: 22  SYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADF----VN 77

Query: 175 RMEKAAEQGSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVS 234
            ++   +  S   A  E  + +           +E     +   ++            V 
Sbjct: 78  VIKYYYQSSSFPEAIAEIDKFRLLGLR-----EVERKIGAIPPETI-----------YVH 121

Query: 235 PSDPVAVAAKKMREFRSNSALIV------TGSKIQGILTSKDVLMRVVAQNLSPELTL 286
           P   +  A   M + R+    ++          I  +LT   +L + ++ N      L
Sbjct: 122 PMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL-KFISMNCKETAML 178

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 4/50 (8%), Positives = 17/50 (34%)

Query: 119 VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKC 168
            S+++ R P+ +   +   E   ++ + +     +         + +   
Sbjct: 3   TSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSE 52

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 52  TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG 111
              +L     +++PE   + +    +A  RV   +LT  +      V        + A  
Sbjct: 2   RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNP-KRPVAVVSERDILRAVA 60

Query: 112 LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVV-ENGEVIAILDITKCLY 170
            R D    +  +  +PI V        A +KM +   RH+ VV +NGE++ +L I     
Sbjct: 61  QRLDLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC- 119

Query: 171 DAISRMEKAAE 181
              + + + A 
Sbjct: 120 FERAILLELAT 130

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 20/151 (13%), Positives = 46/151 (30%), Gaps = 41/151 (27%)

Query: 123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQ 182
           +  +P F+T +    EA + M + +   +P+VE      ++ I                 
Sbjct: 3   VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGII---------------- 46

Query: 183 GSAIAAAVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVA 242
                                       +R      +  +    +  +   +    +  A
Sbjct: 47  ------------------------TNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETA 82

Query: 243 AKKMREFRSNSALIVTGS-KIQGILTSKDVL 272
            + + E R     +V  S ++ G++T KD+ 
Sbjct: 83  ERILHEHRIEKLPLVDNSGRLSGLITIKDIE 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.9
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.88
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.88
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.88
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.87
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.87
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.86
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.85
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.85
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.85
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.84
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.84
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.84
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.84
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.84
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.84
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.83
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.83
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.83
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.83
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.83
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.82
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.81
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.81
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.8
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.8
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.8
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.8
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.79
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.79
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.79
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.79
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.79
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.79
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.79
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.78
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.77
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.76
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.75
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.75
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.74
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.74
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.74
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.73
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.73
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.72
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.71
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.71
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.68
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.68
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.66
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.65
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	82.8

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=6.8e-24  Score=158.56  Aligned_cols=121  Identities=19%  Similarity=0.349  Sum_probs=113.5

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  130 (294)
                      .+++|+|.++++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|++++++.++.......++++|.++++++
T Consensus         1 tt~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~v   80 (123)
T d1y5ha3           1 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYV   80 (123)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCCCE
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeeccceee
Confidence            37899999999999999999999999999999999999999999999999999877777777776778999999999999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYD  171 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~  171 (294)
                      .+++++.++++.|.+++++++||+|+|+++|+||..|++++
T Consensus        81 ~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          81 DANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARH  121 (123)
T ss_dssp             ETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHT
T ss_pred             eecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHhh
Confidence            99999999999999999999999998999999999999874

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=2.9e-22  Score=151.42  Aligned_cols=124  Identities=27%  Similarity=0.401  Sum_probs=113.5

Q ss_pred             ccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeE
Q 041090           50 ERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIF  129 (294)
Q Consensus        50 ~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~  129 (294)
                      ..+|+|+|+++++++++++|+.+|++.|.+++++.+||+|++|+++|++|..|+++.++.++... ..+++++|.+++++
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~-~~~v~~im~~~~~~   82 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPY-DIPVERIMTRNLIT   82 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCT-TSBGGGTCBCSCCE
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCcc-ceeEeecccccccc
Confidence            45799999999999999999999999999999999999999999999999999987666555444 67899999999999


Q ss_pred             EcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090          130 VTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       130 v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~  174 (294)
                      +.+++++.++++.|.+++++++||.++|+++|++|..|+++++.+
T Consensus        83 v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          83 ANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC
T ss_pred             cCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHH
Confidence            999999999999999999999999889999999999999987544

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.88  E-value=4.8e-22  Score=151.57  Aligned_cols=125  Identities=22%  Similarity=0.201  Sum_probs=112.1

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC-------CCCccccccccc
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG-------LRPDQTVVSKIM  123 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~-------~~~~~~~v~~~~  123 (294)
                      ++|+|+|+++++++.+++|+.+|++.|.+++++.+||+|++|+++|++|.+|+++.+....       ......+++++|
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im   81 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVM   81 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHS
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhHhh
Confidence            6899999999999999999999999999999999999999999999999999986554421       123356899999


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISR  175 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~  175 (294)
                      .++++++++++++.+++++|.+++++++||+|+|+++|++|..|+++++...
T Consensus        82 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~~~~  133 (139)
T d2o16a3          82 HTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINL  133 (139)
T ss_dssp             CSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred             ccccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987664

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=3e-22  Score=153.28  Aligned_cols=124  Identities=22%  Similarity=0.269  Sum_probs=115.9

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  130 (294)
                      ++|+|+|.+++.++++++|+.+|++.|.+++++.+||+|++|+++|++|.+|+++++...+......+++++|.++++++
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~~v   82 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKV   82 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCEE
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcccccccccccccccccccc
Confidence            68999999999999999999999999999999999999999999999999999877777777776788999999999999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      .+++++.++++.|.+++++++||+| +|+++|++|..|+++++.+
T Consensus        83 ~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          83 KSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             ETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             cchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhh
Confidence            9999999999999999999999999 8999999999999986543

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.87  E-value=5.2e-22  Score=149.02  Aligned_cols=122  Identities=30%  Similarity=0.462  Sum_probs=112.2

Q ss_pred             cchhccccC---CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCC
Q 041090           51 RTVKKLRLS---KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNP  127 (294)
Q Consensus        51 ~~v~dl~~~---~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~  127 (294)
                      .+|+|+|..   +++++++++|+.+|+++|.+++++++||++ +++++|++|.+|+++.+...+......+++++|.+++
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~   80 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQV   80 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSC
T ss_pred             ccHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcccccceeEeeecccee
Confidence            478999974   899999999999999999999999999998 6899999999999877766666666789999999999


Q ss_pred             eEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHH
Q 041090          128 IFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAI  173 (294)
Q Consensus       128 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~  173 (294)
                      .++.+++++.++++.|.+++++++||+|+|+++|+||..|++++.+
T Consensus        81 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          81 AYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             CCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             EEeccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998754

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=1.6e-21  Score=144.78  Aligned_cols=119  Identities=23%  Similarity=0.294  Sum_probs=108.9

Q ss_pred             chhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEc
Q 041090           52 TVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVT  131 (294)
Q Consensus        52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~  131 (294)
                      +|+|+|+++++++++++|+.+|++.|.+++++.+||.+ +|+++|++|.+||++.+. .+......++.++|.+++++++
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~-~~~~~~~~~v~~~m~~~~~~v~   78 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIA-EGDDLAEVKVWEVMERDLVTIS   78 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHH-HTCCTTTSBHHHHCBCGGGEEC
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccc-ccccccceeEeeeccccccccc
Confidence            58999999999999999999999999999999999998 589999999999986555 4445557799999999999999


Q ss_pred             CCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHH
Q 041090          132 SDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA  172 (294)
Q Consensus       132 ~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~  172 (294)
                      +++++.++++.|.+++++++||.++|+++|++|..|++++.
T Consensus        79 ~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          79 PRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAK  119 (120)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             chhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHhcC
Confidence            99999999999999999999998899999999999999863

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=3.8e-22  Score=155.16  Aligned_cols=125  Identities=22%  Similarity=0.235  Sum_probs=109.9

Q ss_pred             CcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHc-----------------
Q 041090           48 GGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAE-----------------  110 (294)
Q Consensus        48 ~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~-----------------  110 (294)
                      |++++|.++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|..|+++.+...                 
T Consensus         1 ~~~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~   80 (156)
T d2yzqa1           1 YKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWI   80 (156)
T ss_dssp             GGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------
T ss_pred             CCCCCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhh
Confidence            788999999999999999999999999999999999999999999999999999986322110                 


Q ss_pred             ------------CCCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090          111 ------------GLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA  172 (294)
Q Consensus       111 ------------~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~  172 (294)
                                  .......++.++|.++++++.+++++.++.+.|.+++++++||+| +|+++|++|+.|+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          81 LESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             ----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence                        012335578999999999999999999999999999999999999 89999999999998753

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.85  E-value=8.1e-21  Score=142.41  Aligned_cols=123  Identities=26%  Similarity=0.387  Sum_probs=110.9

Q ss_pred             cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090           49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI  128 (294)
Q Consensus        49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  128 (294)
                      .+..|+|+|.++++++++++|+.+|+++|.+++++.+||+| +|+++|++|.+|+++.+. ++... ..++.++|.++++
T Consensus         2 ~~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~-~~~~~-~~~v~~~~~~~~~   78 (127)
T d2ef7a1           2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIG-KGKSL-ETKAEEFMTASLI   78 (127)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH-TTCCT-TCBGGGTSEECCC
T ss_pred             CccCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHH-hhccc-cchhhhhhhhhcc
Confidence            45789999999999999999999999999999999999998 578999999999975544 44443 5689999999999


Q ss_pred             EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      ++.+++++.++++.|.+++++++||++ +|+++|++|..|+++++.+
T Consensus        79 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            999999999999999999999999999 8999999999999987654

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.85  E-value=4.8e-21  Score=145.95  Aligned_cols=130  Identities=21%  Similarity=0.310  Sum_probs=108.9

Q ss_pred             cccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090          117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER  195 (294)
Q Consensus       117 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (294)
                      .+++++|.++++++.+++++.+|++.|.+++++++||+| +|+++|++|..|++..........                
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~----------------   65 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRS----------------   65 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC------------------
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhh----------------
Confidence            468999999999999999999999999999999999999 899999999999987654421111                


Q ss_pred             hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHH
Q 041090          196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRV  275 (294)
Q Consensus       196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~  275 (294)
                                   ..........++.++|.+  ++.++++++++.+|+++|.+++++++||+|+|+++|+||+.||++.+
T Consensus        66 -------------~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~  130 (139)
T d2o16a3          66 -------------AQGDSLAFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIA  130 (139)
T ss_dssp             --------------------CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHH
T ss_pred             -------------hcccccccccchhHhhcc--ccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHH
Confidence                         011122345679999977  99999999999999999999999999999999999999999999665


Q ss_pred             HH
Q 041090          276 VA  277 (294)
Q Consensus       276 ~~  277 (294)
                      ..
T Consensus       131 ~~  132 (139)
T d2o16a3         131 IN  132 (139)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.85  E-value=9.8e-21  Score=140.49  Aligned_cols=119  Identities=17%  Similarity=0.218  Sum_probs=105.9

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhh
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQW  197 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (294)
                      +++++|.++++++++++++.+|++.|.+++++.+||.++|+++|++|..|+++.+...                      
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~----------------------   58 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG----------------------   58 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT----------------------
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecccccccc----------------------
Confidence            4788999999999999999999999999999999999999999999999998765431                      


Q ss_pred             CCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHHH
Q 041090          198 GSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMRV  275 (294)
Q Consensus       198 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~~  275 (294)
                                     ......++.++|..  ++.++++++++.+|+++|.+++++++||+++|+++|+||+.|++++.
T Consensus        59 ---------------~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          59 ---------------DDLAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAK  119 (120)
T ss_dssp             ---------------CCTTTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             ---------------ccccceeEeeeccc--ccccccchhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHhcC
Confidence                           11234678999977  99999999999999999999999999999999999999999999664

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=8.6e-21  Score=144.84  Aligned_cols=126  Identities=17%  Similarity=0.153  Sum_probs=112.6

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC-----CCCccccccccccc
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG-----LRPDQTVVSKIMTR  125 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~-----~~~~~~~v~~~~~~  125 (294)
                      .+|+++|+++++++++++|+.+|+++|.+++++++||+|++++++|+++..|+++.+....     ......+++++|.+
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im~~   81 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVT   81 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBC
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHhCc
Confidence            5899999999999999999999999999999999999999999999999999976554321     12235689999999


Q ss_pred             CCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHH
Q 041090          126 NPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRM  176 (294)
Q Consensus       126 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~  176 (294)
                      +++++.+++++.++++.|.+++++++||+| +|+++|+||..|+++.+....
T Consensus        82 ~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~  133 (141)
T d3ddja1          82 NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  133 (141)
T ss_dssp             CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHH
Confidence            999999999999999999999999999999 899999999999998876643

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=2.4e-20  Score=138.59  Aligned_cols=117  Identities=19%  Similarity=0.244  Sum_probs=108.3

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  130 (294)
                      ++|+++|.++++++.+++|+.+|++.|.+++++.+||+|++|+++|+++.+|+++       .....++.+++..+++++
T Consensus         1 m~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~-------~~~~~~v~~~~~~~~~~v   73 (121)
T d1vr9a3           1 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLD-------LDLDSSVFNKVSLPDFFV   73 (121)
T ss_dssp             CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTT-------SCTTSBSGGGCBCTTCCE
T ss_pred             CCchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhh-------hhccccccccccCccEEE
Confidence            5789999999999999999999999999999999999999999999999999963       123568999999999999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      ++++++.++++.|.++++..+||+| +|+++|++|..|+++++.+
T Consensus        74 ~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          74 HEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             ETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999 8999999999999987654

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=1.7e-21  Score=145.08  Aligned_cols=117  Identities=20%  Similarity=0.294  Sum_probs=90.0

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEE
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFV  130 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v  130 (294)
                      ++|+|+|+++++++++++|+.+|+++|.+++++.+||+|++|+++|++|.+|++..       .....+.++|.++++++
T Consensus         1 m~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~-------~~~~~~~~~~~~~~~~v   73 (122)
T d2yzqa2           1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN-------PDEEQLAMLVKRDVPVV   73 (122)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCEE
T ss_pred             CCcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhh-------hcccchhhccccceeec
Confidence            57899999999999999999999999999999999999999999999999999742       23567899999999999


Q ss_pred             cCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          131 TSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      .+++++.+++++|.+++++++||+| +|+++|++|..|+++++..
T Consensus        74 ~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          74 KENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             ETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             chhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHh
Confidence            9999999999999999999999999 8999999999999976543

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.84  E-value=3e-20  Score=139.23  Aligned_cols=120  Identities=17%  Similarity=0.282  Sum_probs=107.2

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER  195 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (294)
                      +..|+++|.++++++.+++++.+++++|.+++++++||+++|+++|+++..|+++....                     
T Consensus         3 ~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~---------------------   61 (127)
T d2ef7a1           3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGK---------------------   61 (127)
T ss_dssp             CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHT---------------------
T ss_pred             ccCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHh---------------------
Confidence            56899999999999999999999999999999999999998899999999999765332                     


Q ss_pred             hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                                       ......++.++|.+  ++.++.+++++.+|++.|.+++++++||+| +|+++|+||+.||++.
T Consensus        62 -----------------~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~  122 (127)
T d2ef7a1          62 -----------------GKSLETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRA  122 (127)
T ss_dssp             -----------------TCCTTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             -----------------hccccchhhhhhhh--hccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHH
Confidence                             12234678899977  999999999999999999999999999998 8999999999999955


Q ss_pred             H
Q 041090          275 V  275 (294)
Q Consensus       275 ~  275 (294)
                      +
T Consensus       123 i  123 (127)
T d2ef7a1         123 I  123 (127)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=1.6e-20  Score=141.69  Aligned_cols=122  Identities=22%  Similarity=0.295  Sum_probs=108.0

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      ..+|+++|.++++++++++++.++++.|.+++++.+||+| +|+++|++|..|+++....                    
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~--------------------   63 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV--------------------   63 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT--------------------
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhh--------------------
Confidence            4589999999999999999999999999999999999999 8899999999999864332                    


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR  274 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~  274 (294)
                                       ....+..++.++|.+  ++.++.+++++.+++++|.+++++++||+++|+++|+||.+|++++
T Consensus        64 -----------------~~~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil~a  124 (132)
T d2yzia1          64 -----------------PGLPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEA  124 (132)
T ss_dssp             -----------------TCCCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             -----------------ccCccceeEeecccc--cccccCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHH
Confidence                             012234679999977  9999999999999999999999999999889999999999999955


Q ss_pred             HH
Q 041090          275 VV  276 (294)
Q Consensus       275 ~~  276 (294)
                      +.
T Consensus       125 ~~  126 (132)
T d2yzia1         125 SR  126 (132)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.1e-20  Score=142.66  Aligned_cols=123  Identities=15%  Similarity=0.163  Sum_probs=107.0

Q ss_pred             ccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC----CCccccccccc
Q 041090           50 ERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL----RPDQTVVSKIM  123 (294)
Q Consensus        50 ~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~----~~~~~~v~~~~  123 (294)
                      +.+|+++|.+  +++++.+++|+.+|++.|.+++++++||+|++|+++|++|.+|+++++.....    .....+++++|
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m   80 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVM   80 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHS
T ss_pred             CCCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccccccccccccccccccc
Confidence            3589999955  89999999999999999999999999999999999999999999866543211    23356889999


Q ss_pred             ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          124 TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       124 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      ..+++++.+++++.+++..|.+++  .+||+| +|+++|+||..|+++++.+
T Consensus        81 ~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          81 LTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             BCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHh
Confidence            999999999999999999998654  589999 8999999999999988655

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.83  E-value=3.7e-20  Score=138.70  Aligned_cols=116  Identities=16%  Similarity=0.261  Sum_probs=105.7

Q ss_pred             chhccccCCceeecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090           52 TVKKLRLSKALTIPEGTIVSDACRRMASR-----RVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN  126 (294)
Q Consensus        52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~-----~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  126 (294)
                      +++.+|.++++++++++|+.+|++.|.++     .++.+||+|++|+++|+++.++++.       .....+++++|.++
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~-------~~~~~~v~~im~~~   74 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIV-------NDDDTLIADILNER   74 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTT-------SCTTSBHHHHSBSC
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccc-------ccccEEhhhhccCC
Confidence            67899999999999999999999999876     4789999999999999999999852       23367899999999


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      ++++.+++++.+++++|.+++++++||+| +|+++|+||..|+++.+.+
T Consensus        75 ~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          75 VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            99999999999999999999999999999 8999999999999986543

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=4.9e-21  Score=142.81  Aligned_cols=119  Identities=14%  Similarity=0.224  Sum_probs=103.4

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQ  196 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (294)
                      +++++|.++++++.+++++.+|++.|.+++++.+||++ +|+++|++|..|++......                     
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~---------------------   60 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA---------------------   60 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG---------------------
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhc---------------------
Confidence            67899999999999999999999999999999999998 88999999999997543220                     


Q ss_pred             hCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHH
Q 041090          197 WGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR  274 (294)
Q Consensus       197 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~  274 (294)
                       +.              ......+.++|.+  ++.++.+++++.+|+++|.+++++++||+|+|+++|+||+.||++.
T Consensus        61 -~~--------------~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          61 -GL--------------DPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARH  121 (123)
T ss_dssp             -TC--------------CTTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHT
T ss_pred             -CC--------------CcccceEEEEeec--cceeeeecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHhh
Confidence             00              0123457889977  9999999999999999999999999999999999999999999953

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.83  E-value=6.6e-20  Score=142.68  Aligned_cols=126  Identities=7%  Similarity=0.063  Sum_probs=109.3

Q ss_pred             CCcccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHHcC-------------
Q 041090           47 AGGERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA--NALLSGIVTDKDITTRVIAEG-------------  111 (294)
Q Consensus        47 ~~~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~--~~~~~Givt~~di~~~~~~~~-------------  111 (294)
                      .+.+++|+|+|+++++++++++|+.+|+++|.+++++++||+|+  ++.++|+++..|+++.+....             
T Consensus         7 ~~~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~   86 (160)
T d2d4za3           7 NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLT   86 (160)
T ss_dssp             CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCB
T ss_pred             CccceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccc
Confidence            35678999999999999999999999999999999999999985  478999999999976554310             


Q ss_pred             -----------CCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHH
Q 041090          112 -----------LRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDA  172 (294)
Q Consensus       112 -----------~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~  172 (294)
                                 .......+.++|...++++.+++++.+++++|.+.+++++||+++|+++|+||..||++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          87 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             cchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHHHh
Confidence                       1122344667888899999999999999999999999999999999999999999999864

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=5.1e-21  Score=148.68  Aligned_cols=151  Identities=19%  Similarity=0.231  Sum_probs=107.9

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      +.++.++|.++++++.+++++.+|++.|.++++.++||+| +|+++|++|..|++.............       .....
T Consensus         3 ~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~-------~~~~~   75 (156)
T d2yzqa1           3 GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTE-------LAASS   75 (156)
T ss_dssp             GCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC------------------
T ss_pred             CCCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccc-------cccch
Confidence            5689999999999999999999999999999999999999 899999999999875422211111000       00000


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                      ........................++.++|.+  ++.++.+++++.+++++|.+++++++||+| +|+++|+||++||++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~  153 (156)
T d2yzqa1          76 EEEWILESHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLK  153 (156)
T ss_dssp             ---------------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGG
T ss_pred             hhhhhhhhhhhhhHHHhhhcccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHH
Confidence            00111111122223334445567889999977  999999999999999999999999999999 899999999999995


Q ss_pred             HH
Q 041090          274 RV  275 (294)
Q Consensus       274 ~~  275 (294)
                      .+
T Consensus       154 ~l  155 (156)
T d2yzqa1         154 VL  155 (156)
T ss_dssp             GG
T ss_pred             Hh
Confidence            53

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.83  E-value=2.3e-20  Score=139.88  Aligned_cols=121  Identities=17%  Similarity=0.281  Sum_probs=103.9

Q ss_pred             ccccccc---cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          118 VVSKIMT---RNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       118 ~v~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      +++++|.   .+++++.+++++.+|+++|.+++++++||+++++++|++|..|+++....                    
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~~--------------------   62 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYL--------------------   62 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGG--------------------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhhh--------------------
Confidence            5666665   37889999999999999999999999999999999999999999764221                    


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhHHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKDVLMR  274 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~Dil~~  274 (294)
                        .+              ......++.++|.+  ++.++.+++++.+|+++|.+++++++||+|+|+++|+||.+|++++
T Consensus        63 --~~--------------~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          63 --LD--------------KPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKD  124 (127)
T ss_dssp             --SS--------------SCGGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             --hc--------------ccccceeEeeeccc--eeEEeccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHH
Confidence              00              11234678999977  9999999999999999999999999999999999999999999977


Q ss_pred             HH
Q 041090          275 VV  276 (294)
Q Consensus       275 ~~  276 (294)
                      ++
T Consensus       125 ~i  126 (127)
T d2rc3a1         125 AI  126 (127)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3.4e-20  Score=141.94  Aligned_cols=117  Identities=21%  Similarity=0.348  Sum_probs=106.2

Q ss_pred             chhccccCCceeecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccC
Q 041090           52 TVKKLRLSKALTIPEGTIVSDACRRMASRR-----VDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRN  126 (294)
Q Consensus        52 ~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~-----~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~  126 (294)
                      +++.+|+++++++++++|+.+|++.|.+++     +..+||+|++|+++|+++.+|+++       .....++.++|.++
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~-------~~~~~~v~~im~~~   74 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIV-------ADPRTRVAEIMNPK   74 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTT-------SCTTCBSTTTSBSS
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhh-------cccccchHHhcccC
Confidence            578999999999999999999999998874     788999999999999999999952       23357899999999


Q ss_pred             CeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHH
Q 041090          127 PIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISR  175 (294)
Q Consensus       127 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~  175 (294)
                      ++++.+++++.+|++.|.+++++++||+| +|+++|+||..|+++.+...
T Consensus        75 ~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e  124 (144)
T d2yvxa2          75 VVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  124 (144)
T ss_dssp             CCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHH
T ss_pred             CccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHH
Confidence            99999999999999999999999999999 89999999999999876553

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.81  E-value=1.2e-19  Score=138.41  Aligned_cols=128  Identities=20%  Similarity=0.352  Sum_probs=109.7

Q ss_pred             cccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090          117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER  195 (294)
Q Consensus       117 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (294)
                      .+|+++|.++++++++++++.+|++.|.+++++++||++ +++++|+++..|+++..........               
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~---------------   66 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLD---------------   66 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTC---------------
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccc---------------
Confidence            478999999999999999999999999999999999999 8899999999999876544221100               


Q ss_pred             hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                                      .......++.++|.+  +++++.+++++.+++++|.+++++++||+| +|+++|+||++||++.
T Consensus        67 ----------------~~~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~  128 (141)
T d3ddja1          67 ----------------PDYFYGKVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA  128 (141)
T ss_dssp             ----------------THHHHTCBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             ----------------cccccCCCHHHHhCc--ccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHH
Confidence                            012234678999977  999999999999999999999999999998 8999999999999966


Q ss_pred             HHH
Q 041090          275 VVA  277 (294)
Q Consensus       275 ~~~  277 (294)
                      +..
T Consensus       129 l~~  131 (141)
T d3ddja1         129 LHH  131 (141)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=1.4e-20  Score=140.11  Aligned_cols=116  Identities=30%  Similarity=0.459  Sum_probs=87.4

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQ  196 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (294)
                      +++++|.++++++++++++.+|++.|.+++++.+||+| +|+++|+++..|++....                       
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~-----------------------   58 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD-----------------------   58 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC----------------------------
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhc-----------------------
Confidence            57899999999999999999999999999999999999 899999999999875321                       


Q ss_pred             hCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090          197 WGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV  275 (294)
Q Consensus       197 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~  275 (294)
                                          ...+.++|.+  +++++++++++.+|+++|.+++++++||+| +|+++|+||++||++++
T Consensus        59 --------------------~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          59 --------------------EEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             -------------------------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             --------------------ccchhhcccc--ceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence                                1357788866  899999999999999999999999999999 89999999999999766


Q ss_pred             HHc
Q 041090          276 VAQ  278 (294)
Q Consensus       276 ~~~  278 (294)
                      +.+
T Consensus       117 ~~~  119 (122)
T d2yzqa2         117 FAK  119 (122)
T ss_dssp             TTT
T ss_pred             HhH
Confidence            543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.80  E-value=5.3e-19  Score=132.13  Aligned_cols=111  Identities=16%  Similarity=0.242  Sum_probs=95.1

Q ss_pred             ccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCeEEcCCC
Q 041090           57 RLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA--NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPIFVTSDS  134 (294)
Q Consensus        57 ~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~--~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~  134 (294)
                      |..+++++++++|+.+|+++|.+++++++||+|+  +++++|++|.+|+.+.     ..........++..+++++.+++
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~-----~~~~~~~~~~~~~~~~~~~~~~~   77 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI-----SDYNAPISEHMTSEHLVTAAVGT   77 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----SCSSSBTTTSCCCSCCCCEETTC
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHh-----hccCCceeeeeeccceeecCCCC
Confidence            5667889999999999999999999999999997  6899999999999632     12222234445566788899999


Q ss_pred             cHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090          135 LAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA  172 (294)
Q Consensus       135 ~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~  172 (294)
                      ++.+++++|.+++++++||+| +|+++|+||..|++++.
T Consensus        78 ~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          78 DLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI  116 (126)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHh
Confidence            999999999999999999999 89999999999999864

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.80  E-value=3.7e-19  Score=137.57  Aligned_cols=124  Identities=15%  Similarity=0.160  Sum_probs=105.0

Q ss_pred             cchhccccC---CceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccc---
Q 041090           51 RTVKKLRLS---KALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMT---  124 (294)
Q Consensus        51 ~~v~dl~~~---~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~---  124 (294)
                      +++++++..   +++++.+++|+.+|++.|.+++++++||+|++|+++|++|.+|+++.+..........++.++|.   
T Consensus         1 ~pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~   80 (153)
T d2ooxe2           1 VPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRP   80 (153)
T ss_dssp             CBGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSC
T ss_pred             CCHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeee
Confidence            356777654   89999999999999999999999999999999999999999999766554443333556666553   


Q ss_pred             ---cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          125 ---RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       125 ---~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                         .+++++.+++++.++++.|.+++++++||+| +|+++|++|+.|+++++..
T Consensus        81 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          81 ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred             cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHc
Confidence               4566889999999999999999999999999 8999999999999987653

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.80  E-value=3.2e-19  Score=134.23  Aligned_cols=119  Identities=24%  Similarity=0.368  Sum_probs=102.4

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHHHcCCCCcccccccccccCCe
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLT--DANALLSGIVTDKDITTRVIAEGLRPDQTVVSKIMTRNPI  128 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~--d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~~~~~~  128 (294)
                      ++|+|+|.++++++++++|+.+|++.|.+++++++||+  |++++++|+++..|+++.+. .+...  ......+..+++
T Consensus         1 ~~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~-~~~~~--~~~~~~~~~~~~   77 (131)
T d2riha1           1 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVA-QRLDL--DGPAMPIANSPI   77 (131)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHH-TTCCT--TSBSGGGCBCCC
T ss_pred             CCHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccc-ccccc--ccccccccccce
Confidence            47999999999999999999999999999999999999  45689999999999975443 33332  233444556778


Q ss_pred             EEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090          129 FVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA  172 (294)
Q Consensus       129 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~  172 (294)
                      ++.+++++.+++++|.+++++++||+| +|+++|+||..|++++.
T Consensus        78 ~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          78 TVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             eEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            899999999999999999999999999 89999999999999753

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=6e-19  Score=134.30  Aligned_cols=126  Identities=14%  Similarity=0.122  Sum_probs=100.1

Q ss_pred             Ccccchhcc---ccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccccc----
Q 041090           48 GGERTVKKL---RLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTVVS----  120 (294)
Q Consensus        48 ~~~~~v~dl---~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~v~----  120 (294)
                      |-+.+++|+   |.++++++.+++|+.+|++.|.+++++++||+|++|+++|++|..|+++.+..+........+.    
T Consensus         3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~   82 (140)
T d2nyca1           3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM   82 (140)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHH
T ss_pred             cccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhh
Confidence            445666664   6679999999999999999999999999999999999999999999986655443332223322    


Q ss_pred             --cccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHH
Q 041090          121 --KIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAI  173 (294)
Q Consensus       121 --~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~  173 (294)
                        ..+..+++++++++++.++++.|.+++++++||+| +|+++|+||..|+++++.
T Consensus        83 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          83 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             HCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             hhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence              23345677899999999999999999999999999 999999999999998764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=1.3e-19  Score=138.42  Aligned_cols=120  Identities=20%  Similarity=0.229  Sum_probs=105.5

Q ss_pred             cccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090          117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER  195 (294)
Q Consensus       117 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (294)
                      .+++++|.+++.++++++++.+|++.|.+++++++||++ +|+++|++|..|+++.+...                    
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~--------------------   62 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPR--------------------   62 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGG--------------------
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhh--------------------
Confidence            578999999999999999999999999999999999999 89999999999998653320                    


Q ss_pred             hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                        +              ......++.++|.+  +++++++++++.+|+++|.+++++++||+| +|+++|+||..||++.
T Consensus        63 --~--------------~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~  124 (142)
T d1pvma4          63 --N--------------KKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY  124 (142)
T ss_dssp             --C--------------CCGGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred             --c--------------cccccccccccccc--ccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHH
Confidence              0              01223578999977  999999999999999999999999999999 8999999999999953

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.79  E-value=1.7e-19  Score=135.01  Aligned_cols=115  Identities=16%  Similarity=0.286  Sum_probs=101.6

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhC-----CCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQG-----KFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE  191 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~  191 (294)
                      +++.+|.+++++++++.++.+|++.|+++     .++.+||+| +++++|+++..+++..                    
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~--------------------   61 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN--------------------   61 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS--------------------
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccc--------------------
Confidence            57889999999999999999999999775     478999999 9999999998887531                    


Q ss_pred             HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhH
Q 041090          192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKD  270 (294)
Q Consensus       192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~D  270 (294)
                                             ....++.++|.+  +++++.+++++.+|+++|.+++++++||+| +|+++|+||..|
T Consensus        62 -----------------------~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~D  116 (127)
T d2ouxa2          62 -----------------------DDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDD  116 (127)
T ss_dssp             -----------------------CTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred             -----------------------cccEEhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHH
Confidence                                   123679999987  999999999999999999999999999998 899999999999


Q ss_pred             HHHHHHHc
Q 041090          271 VLMRVVAQ  278 (294)
Q Consensus       271 il~~~~~~  278 (294)
                      |+ .++.+
T Consensus       117 il-~~i~e  123 (127)
T d2ouxa2         117 II-DVIDD  123 (127)
T ss_dssp             HH-HHHHH
T ss_pred             HH-HHHHH
Confidence            99 44443

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=3.6e-19  Score=136.36  Aligned_cols=128  Identities=13%  Similarity=0.132  Sum_probs=105.8

Q ss_pred             CCcccchhcccc---CCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCCCCcccc-----
Q 041090           47 AGGERTVKKLRL---SKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGLRPDQTV-----  118 (294)
Q Consensus        47 ~~~~~~v~dl~~---~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~~~~~~~-----  118 (294)
                      ++...+++|++.   .+++++.+++|+.+|++.|.+++++++||+|++|+++|++|..|+++.+..........+     
T Consensus         5 ~f~~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~   84 (145)
T d2v8qe1           5 EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL   84 (145)
T ss_dssp             GGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             HHhhCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhcc
Confidence            445556777754   578999999999999999999999999999999999999999999755543332222333     


Q ss_pred             -cccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          119 -VSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       119 -v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                       ....+..+++++.+++++.++++.|.+++++++||+| +|+++|+||..||++++..
T Consensus        85 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          85 QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             chhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence             3344566788999999999999999999999999998 8999999999999987653

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.79  E-value=6.9e-19  Score=136.80  Aligned_cols=144  Identities=14%  Similarity=0.121  Sum_probs=110.8

Q ss_pred             ccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C--CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 041090          116 QTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N--GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEG  192 (294)
Q Consensus       116 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~  192 (294)
                      ..+++++|.++++++++++++.+++++|.+++++.+||++ +  +.++|+++..|++..+..........          
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~----------   79 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQ----------   79 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSS----------
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhcccccccc----------
Confidence            6799999999999999999999999999999999999998 3  68999999999988766532221100          


Q ss_pred             HHHhhCCCCCChhhh--HHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeehhH
Q 041090          193 VERQWGSNFSAPYAF--IETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTSKD  270 (294)
Q Consensus       193 ~~~~~g~~~~~~~~~--~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~~D  270 (294)
                          ...........  +...........+.++|..  .++++.+++++.+|+++|.+++++++||+++|+++|+||++|
T Consensus        80 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiIt~~D  153 (160)
T d2d4za3          80 ----PFEEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAE  153 (160)
T ss_dssp             ----CCCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHH
T ss_pred             ----chhhccccchhhhhhhhhcccccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHH
Confidence                00001111111  1111222334446778877  999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 041090          271 VLMRV  275 (294)
Q Consensus       271 il~~~  275 (294)
                      |++.+
T Consensus       154 i~k~I  158 (160)
T d2d4za3         154 IQAAI  158 (160)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99654

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=2.6e-19  Score=132.89  Aligned_cols=116  Identities=17%  Similarity=0.169  Sum_probs=104.8

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQ  196 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (294)
                      +++++|.++++++.+++++.+++++|.+.+.+.+||++ +|+++|+++..|+++.                         
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~-------------------------   56 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL-------------------------   56 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS-------------------------
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhh-------------------------
Confidence            68899999999999999999999999999999999999 8999999999998632                         


Q ss_pred             hCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHH
Q 041090          197 WGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRV  275 (294)
Q Consensus       197 ~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~  275 (294)
                                        ....++.++|..  ++.++++++++.+++++|.+++...+||+| +|+++|+||..|+++.+
T Consensus        57 ------------------~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l  116 (121)
T d1vr9a3          57 ------------------DLDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEAL  116 (121)
T ss_dssp             ------------------CTTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             ------------------hccccccccccC--ccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHH
Confidence                              123578899977  899999999999999999999999999999 89999999999999666


Q ss_pred             HHc
Q 041090          276 VAQ  278 (294)
Q Consensus       276 ~~~  278 (294)
                      ..+
T Consensus       117 ~~~  119 (121)
T d1vr9a3         117 IEA  119 (121)
T ss_dssp             HHS
T ss_pred             HHh
Confidence            543

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=8e-19  Score=134.36  Aligned_cols=138  Identities=17%  Similarity=0.213  Sum_probs=105.9

Q ss_pred             cccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 041090          117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVER  195 (294)
Q Consensus       117 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (294)
                      ..+.++|..+++++.+++++.++++.|.+++++.+||+| +|+++|++|..|+++..........               
T Consensus         4 ~~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~---------------   68 (145)
T d1o50a3           4 KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFI---------------   68 (145)
T ss_dssp             HHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCC---------------
T ss_pred             eEhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhccccccc---------------
Confidence            356778889999999999999999999999999999999 8999999999999876544221100               


Q ss_pred             hhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          196 QWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       196 ~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                             ................++.++|.   +++++.+++++.+|+++|.+++++++||+| +|+++|+||..||++ 
T Consensus        69 -------~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~-  137 (145)
T d1o50a3          69 -------PKEELIRSSMKRLIAKNASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILL-  137 (145)
T ss_dssp             -------C-------CCCCCSSCBHHHHCB---CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH-
T ss_pred             -------chhHHHHhhhhhccccCHHHHcC---CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHH-
Confidence                   00000111112233455667664   478899999999999999999999999998 899999999999994 


Q ss_pred             HHHccC
Q 041090          275 VVAQNL  280 (294)
Q Consensus       275 ~~~~~~  280 (294)
                      ++.++.
T Consensus       138 ~l~~~~  143 (145)
T d1o50a3         138 ALWKGR  143 (145)
T ss_dssp             HHHHSC
T ss_pred             HHHhcC
Confidence            454443

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.1e-18  Score=133.47  Aligned_cols=123  Identities=23%  Similarity=0.292  Sum_probs=104.6

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcC--------------CCCcc
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEG--------------LRPDQ  116 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~--------------~~~~~  116 (294)
                      ..|.++|..+++++.+++|+.+|++.|.+++++.+||+|++|+++|++|..||++.+....              .....
T Consensus         4 ~~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (145)
T d1o50a3           4 KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   83 (145)
T ss_dssp             HHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             eEhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhccc
Confidence            3567889999999999999999999999999999999999999999999999976544321              12223


Q ss_pred             cccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHH
Q 041090          117 TVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       117 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~  174 (294)
                      ..++++| .+++++.+++++.+|++.|.+++++++||+| +|+++|+||..|+++++.+
T Consensus        84 ~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          84 KNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             CBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             cCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            4455555 4567899999999999999999999999998 8999999999999987654

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=3e-19  Score=135.12  Aligned_cols=120  Identities=20%  Similarity=0.326  Sum_probs=105.4

Q ss_pred             cchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHHHcCC---------CCccccccc
Q 041090           51 RTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDITTRVIAEGL---------RPDQTVVSK  121 (294)
Q Consensus        51 ~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~~~~~~~~~---------~~~~~~v~~  121 (294)
                      ++|+++|.++++++.+++|+.+|++.|.+++++.+||+|+  +++|+++..|+++.+.....         .....++++
T Consensus         1 m~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (135)
T d3ddja2           1 MNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIID   78 (135)
T ss_dssp             SSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGG
T ss_pred             CEeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccccchhhhhccccccCCHHH
Confidence            4799999999999999999999999999999999999974  69999999999755432221         123567999


Q ss_pred             ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHH
Q 041090          122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDA  172 (294)
Q Consensus       122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~  172 (294)
                      +|..+++++.+++++.+++++|.+++++++||+| +|+++|+||..|+++.+
T Consensus        79 im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~  130 (135)
T d3ddja2          79 YMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLY  130 (135)
T ss_dssp             TSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGG
T ss_pred             HhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHH
Confidence            9999999999999999999999999999999999 89999999999998753

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.7e-18  Score=132.55  Aligned_cols=125  Identities=14%  Similarity=0.163  Sum_probs=104.1

Q ss_pred             ccchhccccC----Cc--eeecCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHHHc-----------
Q 041090           50 ERTVKKLRLS----KA--LTIPEGTIVSDACRRMASRRVDAVLLT--DANALLSGIVTDKDITTRVIAE-----------  110 (294)
Q Consensus        50 ~~~v~dl~~~----~~--~~v~~~~sv~~a~~~~~~~~~~~lpV~--d~~~~~~Givt~~di~~~~~~~-----------  110 (294)
                      .+.++|+|.+    ++  +.+.+++|+.+|+++|.+++++++||+  +++++++|++|.+||+..+...           
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            4567899976    22  345678899999999999999999999  4578999999999998655421           


Q ss_pred             ------------CCCCcccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHH
Q 041090          111 ------------GLRPDQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       111 ------------~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~  174 (294)
                                  .......+++++|.++++++.+++++.+++++|.+++.+++||+++|+++|+||+.|+++++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          82 IIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             hhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEEEHHHHHHHHHH
Confidence                        0122245689999999999999999999999999999999999999999999999999987654

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=4.4e-19  Score=133.70  Aligned_cols=124  Identities=12%  Similarity=0.174  Sum_probs=102.6

Q ss_pred             ccccccc--ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 041090          117 TVVSKIM--TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGV  193 (294)
Q Consensus       117 ~~v~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~  193 (294)
                      .+++++|  ..+++++.+++++.+|+++|.+++++++||+| +|+++|+++..|+++......                 
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~-----------------   64 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLE-----------------   64 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSS-----------------
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccc-----------------
Confidence            5788888  45788999999999999999999999999999 899999999999987543210                 


Q ss_pred             HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                            ..         ..+.....++.++|..  +++++.+++++.+++.+|.+++  .+||+| +|+++|+||++|++
T Consensus        65 ------~~---------~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil  125 (132)
T d1yava3          65 ------RI---------EFEKLDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVL  125 (132)
T ss_dssp             ------SB---------CGGGTTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHH
T ss_pred             ------cc---------cccccccccccccccc--cccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHH
Confidence                  00         0122345678999977  9999999999999999998764  599999 89999999999999


Q ss_pred             HHHH
Q 041090          273 MRVV  276 (294)
Q Consensus       273 ~~~~  276 (294)
                      +.+.
T Consensus       126 ~~l~  129 (132)
T d1yava3         126 KELN  129 (132)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=2.9e-19  Score=136.68  Aligned_cols=113  Identities=19%  Similarity=0.261  Sum_probs=100.8

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCC-----CcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGK-----FRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE  191 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~-----~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~  191 (294)
                      +++.+|.++++++++++++.+|++.|.+++     ++.+||+| +|+++|+++..|++..                    
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~--------------------   61 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------------------   61 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTS--------------------
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhc--------------------
Confidence            578999999999999999999999997763     67889999 8999999999998531                    


Q ss_pred             HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhH
Q 041090          192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKD  270 (294)
Q Consensus       192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~D  270 (294)
                                             ....++.++|.+  ++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+|
T Consensus        62 -----------------------~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~D  116 (144)
T d2yvxa2          62 -----------------------DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD  116 (144)
T ss_dssp             -----------------------CTTCBSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHH
T ss_pred             -----------------------ccccchHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHH
Confidence                                   123678999977  999999999999999999999999999999 799999999999


Q ss_pred             HHHHH
Q 041090          271 VLMRV  275 (294)
Q Consensus       271 il~~~  275 (294)
                      |++.+
T Consensus       117 il~~l  121 (144)
T d2yvxa2         117 VLDVL  121 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99544

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=2.7e-18  Score=129.77  Aligned_cols=127  Identities=17%  Similarity=0.175  Sum_probs=104.4

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEECCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhh
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQW  197 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (294)
                      +|+++|.++++++.+++++.+|++.|.+++++++||+|+ +++|+++..+++........                    
T Consensus         2 ~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-~lvg~~~~~~~~~~~~~~~~--------------------   60 (135)
T d3ddja2           2 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE-KIEGLLTTRDLLSTVESYCK--------------------   60 (135)
T ss_dssp             SGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS-SEEEEEEHHHHHGGGTTCC---------------------
T ss_pred             EeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec-ceeceeeccchhhhhccccc--------------------
Confidence            688999999999999999999999999999999999864 69999999998764322100                    


Q ss_pred             CCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          198 GSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       198 g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                             ..............+++++|..  ++.++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.
T Consensus        61 -------~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~  129 (135)
T d3ddja2          61 -------DSCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLL  129 (135)
T ss_dssp             ---------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGG
T ss_pred             -------cchhhhhccccccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHH
Confidence                   0001112223345789999987  999999999999999999999999999999 8999999999999943

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.1e-18  Score=134.10  Aligned_cols=128  Identities=16%  Similarity=0.155  Sum_probs=106.3

Q ss_pred             CCcccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHcCC----CC-----
Q 041090           47 AGGERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIAEGL----RP-----  114 (294)
Q Consensus        47 ~~~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~~~~----~~-----  114 (294)
                      ..+..++.|+|..  ++++++.++|+.+|++.|.+++++++||+++ +++++|+++..|++..+.....    ..     
T Consensus         9 ~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2           9 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             HhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            4567899999965  7899999999999999999999999999975 6899999999999755433210    00     


Q ss_pred             -----cccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHH
Q 041090          115 -----DQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAIS  174 (294)
Q Consensus       115 -----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~  174 (294)
                           .......++..+++++++++++.+++++|.+++++++||+|  +|+++|+||+.||++++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          89 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence                 01133467777889999999999999999999999999997  5799999999999987654

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.74  E-value=8.5e-18  Score=126.29  Aligned_cols=116  Identities=19%  Similarity=0.293  Sum_probs=97.8

Q ss_pred             ccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 041090          118 VVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVE  194 (294)
Q Consensus       118 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~  194 (294)
                      +++++|.++++++++++++.++++.|.+++++++||++   +++++|+++..|+.+.....                   
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~-------------------   62 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR-------------------   62 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT-------------------
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc-------------------
Confidence            68999999999999999999999999999999999994   57899999999997653321                   


Q ss_pred             HhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHH
Q 041090          195 RQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLM  273 (294)
Q Consensus       195 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~  273 (294)
                                          .........+..  ++.++.+++++.+|+++|.+++++.+||+| +|+++|+||..||++
T Consensus        63 --------------------~~~~~~~~~~~~--~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~  120 (131)
T d2riha1          63 --------------------LDLDGPAMPIAN--SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCF  120 (131)
T ss_dssp             --------------------CCTTSBSGGGCB--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHS
T ss_pred             --------------------cccccccccccc--cceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHH
Confidence                                011122333434  788999999999999999999999999999 899999999999995


Q ss_pred             H
Q 041090          274 R  274 (294)
Q Consensus       274 ~  274 (294)
                      .
T Consensus       121 ~  121 (131)
T d2riha1         121 E  121 (131)
T ss_dssp             C
T ss_pred             H
Confidence            4

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.74  E-value=1.2e-17  Score=124.62  Aligned_cols=110  Identities=18%  Similarity=0.351  Sum_probs=91.9

Q ss_pred             cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCC
Q 041090          123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGS  199 (294)
Q Consensus       123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  199 (294)
                      |..+|+++.+++++.+|+++|.+++++.+||+|   +++++|++|..|++...                           
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~---------------------------   55 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS---------------------------   55 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS---------------------------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh---------------------------
Confidence            446788999999999999999999999999998   47899999999986421                           


Q ss_pred             CCCChhhhHHHHHHhhcccch-hhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090          200 NFSAPYAFIETLRERMFKPSL-STIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV  276 (294)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~v-~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~  276 (294)
                                     ...... ..++..  +++++.+++++.+|+++|.+++++.+||+| +|+++|+||++||++...
T Consensus        56 ---------------~~~~~~~~~~~~~--~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          56 ---------------DYNAPISEHMTSE--HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             ---------------CSSSBTTTSCCCS--CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ---------------ccCCceeeeeecc--ceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                           111222 334444  788999999999999999999999999998 799999999999996543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.73  E-value=2.1e-19  Score=133.13  Aligned_cols=111  Identities=22%  Similarity=0.299  Sum_probs=59.5

Q ss_pred             ccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHcCCCCccccccccc--ccCCeEEc
Q 041090           57 RLSKALTIPEGTIVSDACRRMASRRVDAVLLTDA---NALLSGIVTDKDITTRVIAEGLRPDQTVVSKIM--TRNPIFVT  131 (294)
Q Consensus        57 ~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~---~~~~~Givt~~di~~~~~~~~~~~~~~~v~~~~--~~~~~~v~  131 (294)
                      |..+++++++++|+.+|+++|.+++++++||+|+   +++++|++|.+|+. .......   ..++..++  ..+++++.
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~-~~~~~~~---~~~~~~~~~~~~~~~~v~   77 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDID-FLKEEEH---DRFLEEIMTKREDLVVAP   77 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC--------------------------CCSBTTTSCCEE
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeee-ehhcccc---CceeEEEEeeccCceEEC
Confidence            5567789999999999999999999999999985   67999999999984 3322222   23444444  34678899


Q ss_pred             CCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHH
Q 041090          132 SDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYD  171 (294)
Q Consensus       132 ~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~  171 (294)
                      +++++.+|+++|.+++++++||+| +|+++|+||..|+++.
T Consensus        78 ~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          78 AGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             TTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            999999999999999999999999 8999999999999875

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.8e-17  Score=128.73  Aligned_cols=140  Identities=14%  Similarity=0.130  Sum_probs=105.4

Q ss_pred             ccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE--CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090          116 QTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE--NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE  191 (294)
Q Consensus       116 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~  191 (294)
                      ..++.|+|.  .++++++.++++.+|++.|.++++.++||++  +++++|+++..|++..............        
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~--------   83 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQI--------   83 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTC--------
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchh--------
Confidence            468889884  4678899999999999999999999999998  5899999999999987665332211100        


Q ss_pred             HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee--CCeEeEeeehh
Q 041090          192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT--GSKIQGILTSK  269 (294)
Q Consensus       192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~g~~vGivt~~  269 (294)
                              ....... ..     .......++|..  +++++++++++.+|+++|.+++++++||+|  +|+++|+||.+
T Consensus        84 --------~~~~~~~-~~-----~~~~~~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~  147 (159)
T d2v8qe2          84 --------YELEEHK-IE-----TWREVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHK  147 (159)
T ss_dssp             --------CCGGGCB-HH-----HHHHHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHH
T ss_pred             --------hhhhhhh-cc-----cccceeeeeecc--ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHH
Confidence                    0000000 00     011224556655  899999999999999999999999999998  58999999999


Q ss_pred             HHHHHHHHccC
Q 041090          270 DVLMRVVAQNL  280 (294)
Q Consensus       270 Dil~~~~~~~~  280 (294)
                      ||+ +++..++
T Consensus       148 dil-k~l~~~~  157 (159)
T d2v8qe2         148 RIL-KFLKLFI  157 (159)
T ss_dssp             HHH-HHHHHHS
T ss_pred             HHH-HHHHHHc
Confidence            999 5555554

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.9e-17  Score=125.77  Aligned_cols=123  Identities=20%  Similarity=0.256  Sum_probs=92.5

Q ss_pred             ccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCC
Q 041090          122 IMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSN  200 (294)
Q Consensus       122 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  200 (294)
                      ++..+++++.+++++.+|++.|.+++++++||+| +|+++|++|..|+++..........                    
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~--------------------   73 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL--------------------   73 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----C--------------------
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcccccc--------------------
Confidence            4567889999999999999999999999999999 8899999999999876543211100                    


Q ss_pred             CCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHH
Q 041090          201 FSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVV  276 (294)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~  276 (294)
                       ...  ....       ......+..  +++++.+++++.+++++|.+++++++||+| +|+++|+||.+||++.++
T Consensus        74 -~~~--~~~~-------~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          74 -SLS--VGEA-------LMRRSDDFE--GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             -CSB--HHHH-------HHHCC--------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -ccc--hhhh-------hhhhhhccc--ccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence             000  0000       011222323  788999999999999999999999999998 899999999999996553

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.71  E-value=3.1e-17  Score=129.84  Aligned_cols=127  Identities=13%  Similarity=0.191  Sum_probs=104.7

Q ss_pred             cccchhccccC--CceeecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHc----CCCC-------
Q 041090           49 GERTVKKLRLS--KALTIPEGTIVSDACRRMASRRVDAVLLTDA-NALLSGIVTDKDITTRVIAE----GLRP-------  114 (294)
Q Consensus        49 ~~~~v~dl~~~--~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~-~~~~~Givt~~di~~~~~~~----~~~~-------  114 (294)
                      ...++.|+|.+  ++++++++.++.+|++.|.+++++++||+|+ +++++|++|..|+++.+...    ....       
T Consensus        18 ~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~   97 (179)
T d2ooxe1          18 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDK   97 (179)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGG
T ss_pred             cCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhc
Confidence            45678999974  8899999999999999999999999999985 58999999999998655431    0000       


Q ss_pred             -------cccccccccccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CC-----EEEEEEehHHHHHHHHHH
Q 041090          115 -------DQTVVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NG-----EVIAILDITKCLYDAISR  175 (294)
Q Consensus       115 -------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-----~~vGivt~~dll~~~~~~  175 (294)
                             ........|..+++++.+++++.++++.|.+++++++||+| +|     +++|++|+.||++++..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~  171 (179)
T d2ooxe1          98 FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  171 (179)
T ss_dssp             SBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred             cchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHh
Confidence                   01123345677889999999999999999999999999998 54     699999999999987653

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.71  E-value=1.1e-16  Score=123.39  Aligned_cols=119  Identities=13%  Similarity=0.228  Sum_probs=96.0

Q ss_pred             cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhCCCCCC
Q 041090          125 RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWGSNFSA  203 (294)
Q Consensus       125 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  203 (294)
                      .+++++.+++++.+|++.|.+++++++||+| +|+++|+++..|+++.......                          
T Consensus        12 ~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~--------------------------   65 (153)
T d2ooxe2          12 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDY--------------------------   65 (153)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCG--------------------------
T ss_pred             CCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccc--------------------------
Confidence            4788999999999999999999999999999 8899999999999765432100                          


Q ss_pred             hhhhHHHHHHhhcccchhhhhhc----CCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHHHHHc
Q 041090          204 PYAFIETLRERMFKPSLSTIITE----NAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMRVVAQ  278 (294)
Q Consensus       204 ~~~~~~~~~~~~~~~~v~~im~~----~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~~~~~  278 (294)
                                .....++.++|..    ..++.++.+++++.+++++|.+++++++||+| +|+++|+||+.|+++.++..
T Consensus        66 ----------~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          66 ----------SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             ----------GGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred             ----------cccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcC
Confidence                      0012234444422    12678899999999999999999999999998 89999999999999766543


Q ss_pred             c
Q 041090          279 N  279 (294)
Q Consensus       279 ~  279 (294)
                      .
T Consensus       136 ~  136 (153)
T d2ooxe2         136 K  136 (153)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.68  E-value=9.2e-19  Score=129.60  Aligned_cols=112  Identities=11%  Similarity=0.240  Sum_probs=59.6

Q ss_pred             cccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE----CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhC
Q 041090          123 MTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE----NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGVERQWG  198 (294)
Q Consensus       123 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  198 (294)
                      |..+|+++.+++++.+|+++|.+++++++||++    +++++|++|..|+......                        
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~------------------------   57 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE------------------------   57 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC--------------------------------------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcc------------------------
Confidence            346778999999999999999999999999997    3689999999997532211                        


Q ss_pred             CCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHHHH
Q 041090          199 SNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVLMR  274 (294)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil~~  274 (294)
                                      ....++.++|....++.++.+++++.+|+++|.+++++++||+| +|+++|+||+.||++.
T Consensus        58 ----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          58 ----------------EHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             ------------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             ----------------ccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence                            01123444443334789999999999999999999999999999 7999999999999954

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.5e-17  Score=127.09  Aligned_cols=130  Identities=18%  Similarity=0.233  Sum_probs=98.7

Q ss_pred             cccccc---ccCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 041090          118 VVSKIM---TRNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-NGEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVEGV  193 (294)
Q Consensus       118 ~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~~~  193 (294)
                      +++++.   ..+++++.+++++.+|++.|.+++++++||++ +|+++|++|..|++......                  
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~------------------   71 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK------------------   71 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSS------------------
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcc------------------
Confidence            444443   35678999999999999999999999999999 89999999999987543210                  


Q ss_pred             HHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-CCeEeEeeehhHHH
Q 041090          194 ERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-GSKIQGILTSKDVL  272 (294)
Q Consensus       194 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~g~~vGivt~~Dil  272 (294)
                            ...........      .......|..  ++.++.+++++.+++++|.+++++++||+| +|+++|+||+.||+
T Consensus        72 ------~~~~~~~~v~~------~~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii  137 (145)
T d2v8qe1          72 ------TYNNLDVSVTK------ALQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL  137 (145)
T ss_dssp             ------CCCCCSSBHHH------HGGGCCSCCC--SCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHH
T ss_pred             ------cccchhhhhhh------ccchhhhccC--CCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHH
Confidence                  00000000000      0112334444  788999999999999999999999999998 89999999999999


Q ss_pred             HHHHHcc
Q 041090          273 MRVVAQN  279 (294)
Q Consensus       273 ~~~~~~~  279 (294)
                      +.++..+
T Consensus       138 ~~lv~~~  144 (145)
T d2v8qe1         138 QALVLTG  144 (145)
T ss_dssp             HHHHSSC
T ss_pred             HHHHhcC
Confidence            8877654

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1e-15  Score=119.90  Aligned_cols=147  Identities=15%  Similarity=0.158  Sum_probs=102.6

Q ss_pred             cccccccc----CC--eEEcCCCcHHHHHHHHHhCCCcEEEEEE---CCEEEEEEehHHHHHHHHHHHHHHHhhchhHHH
Q 041090          118 VVSKIMTR----NP--IFVTSDSLAIEALQKMVQGKFRHLPVVE---NGEVIAILDITKCLYDAISRMEKAAEQGSAIAA  188 (294)
Q Consensus       118 ~v~~~~~~----~~--~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~  188 (294)
                      .++|+|.+    ++  +.+.++.++.+++++|.+++++.+||++   +++++|+++..||+..+............    
T Consensus         4 ~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~----   79 (169)
T d2j9la1           4 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS----   79 (169)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT----
T ss_pred             chhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhccccccccccc----
Confidence            45667743    22  3456778999999999999999999993   67899999999999865432111000000    


Q ss_pred             HHHHHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEeeCCeEeEeeeh
Q 041090          189 AVEGVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVTGSKIQGILTS  268 (294)
Q Consensus       189 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~vGivt~  268 (294)
                             .....+....  ...........++.++|.+  ++.++.+++++.+++++|.+++++.+||+++|+++|+||+
T Consensus        80 -------~~~~~~~~~~--~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiIt~  148 (169)
T d2j9la1          80 -------TSIIYFTEHS--PPLPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITK  148 (169)
T ss_dssp             -------TCEEECSSSC--CCCCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEH
T ss_pred             -------chhhhhcccc--hhhhhccccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEEEH
Confidence                   0000000000  0000112235668999987  8999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHccC
Q 041090          269 KDVLMRVVAQNL  280 (294)
Q Consensus       269 ~Dil~~~~~~~~  280 (294)
                      +||++. +.+..
T Consensus       149 ~Dil~~-l~~~~  159 (169)
T d2j9la1         149 KDVLKH-IAQMA  159 (169)
T ss_dssp             HHHHHH-HHHHC
T ss_pred             HHHHHH-HHHHh
Confidence            999954 44433

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.65  E-value=3.5e-16  Score=123.66  Aligned_cols=145  Identities=10%  Similarity=0.083  Sum_probs=105.1

Q ss_pred             ccccccccc--cCCeEEcCCCcHHHHHHHHHhCCCcEEEEEE-C-CEEEEEEehHHHHHHHHHHHHHHHhhchhHHHHHH
Q 041090          116 QTVVSKIMT--RNPIFVTSDSLAIEALQKMVQGKFRHLPVVE-N-GEVIAILDITKCLYDAISRMEKAAEQGSAIAAAVE  191 (294)
Q Consensus       116 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~vGivt~~dll~~~~~~~~~~~~~~~~~~~~~~  191 (294)
                      ..++.++|.  .++++++++.++.+|+..|.+++++++||+| + ++++|++|..|++..+..............     
T Consensus        19 ~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~-----   93 (179)
T d2ooxe1          19 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA-----   93 (179)
T ss_dssp             HSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGG-----
T ss_pred             CCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhh-----
Confidence            457889985  4778999999999999999999999999998 4 789999999999987655332221100000     


Q ss_pred             HHHHhhCCCCCChhhhHHHHHHhhcccchhhhhhcCCceeEeCCCCcHHHHHHHHHHhCCceeEEee-C-----CeEeEe
Q 041090          192 GVERQWGSNFSAPYAFIETLRERMFKPSLSTIITENAKVAIVSPSDPVAVAAKKMREFRSNSALIVT-G-----SKIQGI  265 (294)
Q Consensus       192 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-----g~~vGi  265 (294)
                                .........   .........+|.+  +++++.+++++.+|+.+|.+++++++||+| +     ++++|+
T Consensus        94 ----------~~~~~~~~~---~~~~~~~~~~~~~--~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgi  158 (179)
T d2ooxe1          94 ----------EIDKFRLLG---LREVERKIGAIPP--ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV  158 (179)
T ss_dssp             ----------GGGGSBHHH---HHHHHHHTTCSCS--SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEE
T ss_pred             ----------hhhccchhh---hcccceeeeeccc--CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEE
Confidence                      000000000   0111223345655  899999999999999999999999999998 3     379999


Q ss_pred             eehhHHHHHHHHccCC
Q 041090          266 LTSKDVLMRVVAQNLS  281 (294)
Q Consensus       266 vt~~Dil~~~~~~~~~  281 (294)
                      ||++||+ +++..++.
T Consensus       159 iT~~dIl-k~l~~~~~  173 (179)
T d2ooxe1         159 LTQYRIL-KFISMNCK  173 (179)
T ss_dssp             EEHHHHH-HHHHTTCG
T ss_pred             EeHHHHH-HHHHHhhh
Confidence            9999999 45555543

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=82.80  E-value=0.0066  Score=47.05  Aligned_cols=56  Identities=13%  Similarity=0.022  Sum_probs=50.4

Q ss_pred             cccchhccccCCceeecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 041090           49 GERTVKKLRLSKALTIPEGTIVSDACRRMASRRVDAVLLTDANALLSGIVTDKDIT  104 (294)
Q Consensus        49 ~~~~v~dl~~~~~~~v~~~~sv~~a~~~~~~~~~~~lpV~d~~~~~~Givt~~di~  104 (294)
                      ....++++|...++++..+++-+++.++|.+.+.+..||++++++++|.|+.+|+.
T Consensus       135 ~~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die  190 (213)
T d1lkvx_         135 IQLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVE  190 (213)
T ss_dssp             HHHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred             HhHHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHH
Confidence            34557888888889999999999999999999999999999999999999999973