Citrus Sinensis ID: 041105

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
MATNSSKLNIPIFSSLPLIILAVYSSGSPATESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMFPEL
cccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccHHHHHHccccccccHHHHHHHHHccccEEEcccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHcccccccccccccccccEEEccccccccccccEEccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccc
cccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccccccHHHHHHHccccccccHHHHHHHHcccEEEEEEcccHHHHcccccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHEccccccHHHccccccccccHHHHHHcccccccEEEEEccHHcccccccHHHHHHHHHHHHHHHHcccEEEEccccccHHHcccHHcccEEEEEcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccc
matnssklnipifsslPLIILAVyssgspatesrefsvkEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLnpllrgvievnpdainqadkadqerkakaprsqlglhgipilvkdniatkdkmntTAGSFALlgsvvprdaFVVTKLLEAGAIILGkasmsewahfrtfespngwcartgqgknpyvlsadpcgsssgsaISVAANMVAVSLgtdtdasilcpsgsnsvvgikptvglisrdgvipvsprldtvgpisktvADTVYVLDAIvgfdakdeatreaskyippggykqflkphglqgkrlGIVRNlgsnftisSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMFPEL
matnssklnipifsSLPLIILAVYSSGSPATESREFSVKEATIEDLQLafkqnqltsrQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAkaprsqlglhgipilVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLisrdgvipvsprldtvgpisktvadtVYVLDAIVGFDAKDEATREaskyippggykqFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMFPEL
MATNSSKlnipifsslpliilAVYSSGSPATESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCgsssgsaisvaaNMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMFPEL
********NIPIFSSLPLIILAVYS***************ATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNP*********************LGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSAD********AISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNK*****
**********PIFSSLPLIILAVYSSGSPATESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERK****RSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNK*****
MATNSSKLNIPIFSSLPLIILAVYSS**********SVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQA*************SQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMFPEL
**TNSSKLNIPIFSSLPLIILAVYSSGSPATESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSA****ANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMF***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATNSSKLNIPIFSSLPLIILAVYSSGSPATESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMFPEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query403 2.2.26 [Sep-21-2011]
Q9URY4 583 Putative amidase C869.01 yes no 0.913 0.631 0.418 4e-71
Q97EX8 478 Glutamyl-tRNA(Gln) amidot yes no 0.712 0.600 0.363 1e-33
C1D1L2 487 Glutamyl-tRNA(Gln) amidot no no 0.615 0.509 0.370 2e-33
B0K3S3 488 Glutamyl-tRNA(Gln) amidot yes no 0.714 0.590 0.348 6e-33
B0KBN4 488 Glutamyl-tRNA(Gln) amidot yes no 0.714 0.590 0.351 8e-33
A7GIK2 485 Glutamyl-tRNA(Gln) amidot yes no 0.707 0.587 0.346 4e-32
Q6AQK1 485 Glutamyl-tRNA(Gln) amidot yes no 0.719 0.597 0.349 4e-32
Q3Z6V3 486 Glutamyl-tRNA(Gln) amidot yes no 0.575 0.477 0.371 5e-32
Q9JYZ9 481 Glutamyl-tRNA(Gln) amidot yes no 0.717 0.600 0.310 8e-32
Q9JTZ5 481 Glutamyl-tRNA(Gln) amidot yes no 0.717 0.600 0.314 1e-31
>sp|Q9URY4|YI01_SCHPO Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=3 SV=1 Back     alignment and function desciption
 Score =  269 bits (687), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 160/382 (41%), Positives = 232/382 (60%), Gaps = 14/382 (3%)

Query: 29  PATESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQ 88
           P  + +  ++++ATI+ LQ   +   LTS  +V  Y+    ++NP + G++++NPD +  
Sbjct: 57  PMPKCQNITLEDATIDQLQNYMENGILTSTDIVHCYLDRYLQVNPYVNGILQLNPDVLTI 116

Query: 89  ADKADQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKL 148
           A + D ER     R  L  HGIP +VKDN ATKDKM+TTAGS+ALLGS+VPRDA+VV +L
Sbjct: 117 ASELDDERANGIIRGPL--HGIPFIVKDNFATKDKMDTTAGSYALLGSIVPRDAYVVKQL 174

Query: 149 LEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANM 208
            EAGA++ G A++SEWA  R+ +   G+ AR GQ + P+ L+ +P GSSSGSAISVA+NM
Sbjct: 175 REAGAVLFGHATLSEWADMRSNDYSEGYSARGGQSRCPFNLTVNPGGSSSGSAISVASNM 234

Query: 209 VAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYV 268
           +A +LGT+TD SI+ P+  N VVG+KPTVGL SR GVIP S   DT GPI++TV D VYV
Sbjct: 235 IAFALGTETDGSIIDPAMRNGVVGLKPTVGLTSRYGVIPESEHQDTTGPIARTVRDAVYV 294

Query: 269 LDAIVGFDAKDEATREASKYIPP-GGYKQFL-KPHGLQGKRLGI-VRNLGSNFTISSEVT 325
             ++ G D  D  T   +   P  G Y +FL     L+G R G+  + L  N   + E+ 
Sbjct: 295 FQSMWGIDENDIYTLNQTGKTPEDGDYMKFLSNKTSLEGARFGLPWKRLWQN-AKADEID 353

Query: 326 EAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGE-------TLAILAAEFKQALNAY 378
              E  V+ + + GAI+ +N    NL+ I N   N E          ++  +F   + +Y
Sbjct: 354 RLLE-VVKQIEEAGAIVYNNTNFYNLDVISNDGWNWELGSVNESEYTVVKVDFYNNIKSY 412

Query: 379 LQELVTSPVRSLADVIAFNKMF 400
           L E+  + + SL D++ +N  +
Sbjct: 413 LSEVKNTEIHSLEDIVEYNNKY 434

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 4
>sp|Q97EX8|GATA2_CLOAB Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gatA2 PE=3 SV=1 Back     alignment and function description
>sp|C1D1L2|GATA_DEIDV Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B0K3S3|GATA_THEPX Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B0KBN4|GATA_THEP3 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A7GIK2|GATA_CLOBL Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q6AQK1|GATA_DESPS Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q3Z6V3|GATA_DEHE1 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides ethenogenes (strain 195) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q9JYZ9|GATA_NEIMB Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup B (strain MC58) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q9JTZ5|GATA_NEIMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=gatA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
359475039 509 PREDICTED: putative amidase C869.01-like 0.930 0.736 0.708 1e-149
359474857 514 PREDICTED: putative amidase C869.01-like 0.920 0.721 0.707 1e-147
224078151 510 predicted protein [Populus trichocarpa] 0.923 0.729 0.697 1e-147
147861793 514 hypothetical protein VITISV_016638 [Viti 0.920 0.721 0.707 1e-147
225427948 515 PREDICTED: putative amidase C869.01-like 0.930 0.728 0.692 1e-146
359474863 506 PREDICTED: LOW QUALITY PROTEIN: putative 0.920 0.733 0.707 1e-145
224078139 516 predicted protein [Populus trichocarpa] 0.950 0.742 0.659 1e-144
255574730 510 amidase, putative [Ricinus communis] gi| 0.972 0.768 0.655 1e-143
224078165 518 predicted protein [Populus trichocarpa] 0.915 0.712 0.705 1e-141
224105219 522 predicted protein [Populus trichocarpa] 0.905 0.699 0.689 1e-141
>gi|359475039|ref|XP_003631572.1| PREDICTED: putative amidase C869.01-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/378 (70%), Positives = 305/378 (80%), Gaps = 3/378 (0%)

Query: 26  SGSPATESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDA 85
           SGS A     FS++EAT+ D  +AF+QN+LTSRQLVE Y+ +I +LNP+LRGVIEVNPDA
Sbjct: 20  SGSIAITGHAFSIEEATVHDFHMAFEQNKLTSRQLVEFYLGKIHKLNPILRGVIEVNPDA 79

Query: 86  INQADKADQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVV 145
           + QADKAD+ERKAK P S LGLHGIPIL+KDNIATKDKMNTTAGSFALL SVVPRDA VV
Sbjct: 80  LLQADKADRERKAKLPGSLLGLHGIPILLKDNIATKDKMNTTAGSFALLKSVVPRDAGVV 139

Query: 146 TKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVA 205
            KL +AGAIILGKAS+SEWA+FR    P+GWCARTGQGKNPYVLSA PCGSSSGSAISVA
Sbjct: 140 RKLRKAGAIILGKASLSEWAYFRATVIPSGWCARTGQGKNPYVLSATPCGSSSGSAISVA 199

Query: 206 ANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADT 265
           AN+ AVSLGT+TD SILCPS  NSVVGIKPT+GL SR GV+P+SPR DTVGPI +TV+D 
Sbjct: 200 ANLAAVSLGTETDGSILCPSHVNSVVGIKPTLGLTSRAGVVPISPRQDTVGPICRTVSDA 259

Query: 266 VYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVT 325
           V VLD IVGFD +DEATR +SKYIP GGYKQFL  +GL+GKRLGIVRN    F   S + 
Sbjct: 260 VEVLDVIVGFDYRDEATRTSSKYIPQGGYKQFLNANGLKGKRLGIVRNPFYMFENGSVLP 319

Query: 326 EAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTS 385
           + FEHH  TLRQ GAIL+D+ EI N++ I  S   G   A L AEFK +LNAYL+ELV S
Sbjct: 320 QVFEHHFHTLRQGGAILVDHLEIANIDVIYGSSGEG---AALEAEFKISLNAYLKELVAS 376

Query: 386 PVRSLADVIAFNKMFPEL 403
           PVR+LADVIAFN  F  L
Sbjct: 377 PVRTLADVIAFNNKFSHL 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474857|ref|XP_002277463.2| PREDICTED: putative amidase C869.01-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224078151|ref|XP_002305495.1| predicted protein [Populus trichocarpa] gi|222848459|gb|EEE86006.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147861793|emb|CAN80909.1| hypothetical protein VITISV_016638 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427948|ref|XP_002276506.1| PREDICTED: putative amidase C869.01-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474863|ref|XP_003631544.1| PREDICTED: LOW QUALITY PROTEIN: putative amidase C869.01-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224078139|ref|XP_002305493.1| predicted protein [Populus trichocarpa] gi|222848457|gb|EEE86004.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255574730|ref|XP_002528273.1| amidase, putative [Ricinus communis] gi|223532310|gb|EEF34111.1| amidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224078165|ref|XP_002305497.1| predicted protein [Populus trichocarpa] gi|222848461|gb|EEE86008.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224105219|ref|XP_002313731.1| predicted protein [Populus trichocarpa] gi|222850139|gb|EEE87686.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
TAIR|locus:2116890 466 AT4G34880 "AT4G34880" [Arabido 0.414 0.358 0.575 1.4e-95
POMBASE|SPAC869.01 583 SPAC869.01 "amidase (predicted 0.913 0.631 0.390 2.8e-66
UNIPROTKB|Q81RH4 491 BAS1925 "Amidase family protei 0.878 0.720 0.403 3e-62
TIGR_CMR|BA_2072 491 BA_2072 "amidase family protei 0.878 0.720 0.403 3e-62
UNIPROTKB|G4MQU3 555 MGG_04756 "Glutamyl-tRNA(Gln) 0.880 0.639 0.409 1e-59
UNIPROTKB|Q0C2V5 506 HNE_1220 "Amidase family prote 0.640 0.509 0.395 2.9e-58
UNIPROTKB|Q81RW6 536 BAS1782 "Amidase family protei 0.868 0.652 0.352 7.8e-55
TIGR_CMR|BA_1921 536 BA_1921 "amidase family protei 0.868 0.652 0.352 7.8e-55
UNIPROTKB|G4MP85 559 MGG_02188 "Glutamyl-tRNA(Gln) 0.893 0.644 0.374 9.2e-52
TIGR_CMR|CBU_1474 483 CBU_1474 "glutamyl-tRNA(Gln) a 0.717 0.598 0.325 1.1e-32
TAIR|locus:2116890 AT4G34880 "AT4G34880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 492 (178.3 bits), Expect = 1.4e-95, Sum P(2) = 1.4e-95
 Identities = 103/179 (57%), Positives = 134/179 (74%)

Query:   224 PSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATR 283
             PS  NSVVGIKP+VGL SR GV+P+S R D++GPI +TV+D V++LDAIVG+D  DEAT+
Sbjct:   181 PS-QNSVVGIKPSVGLTSRAGVVPISLRQDSIGPICRTVSDAVHLLDAIVGYDPLDEATK 239

Query:   284 EASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILL 343
              AS++IP GGYKQFL   GL+GKRLGIV    S            +HH++TLR++GAI++
Sbjct:   240 TASEFIPEGGYKQFLTTSGLKGKRLGIVMKHSS----------LLDHHIKTLRREGAIVI 289

Query:   344 DNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMFPE 402
             +N  I N+E I+    +GE +A+LA EFK +LNAYL+ELV SPVRSLADVIA+N+ F E
Sbjct:   290 NNLTIPNIEVIVGGTDSGEEIALLA-EFKMSLNAYLKELVKSPVRSLADVIAYNEEFAE 347
GO:0004040 "amidase activity" evidence=ISS
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
POMBASE|SPAC869.01 SPAC869.01 "amidase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q81RH4 BAS1925 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2072 BA_2072 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|G4MQU3 MGG_04756 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C2V5 HNE_1220 "Amidase family protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q81RW6 BAS1782 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1921 BA_1921 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|G4MP85 MGG_02188 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1474 CBU_1474 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
PRK08137 497 PRK08137, PRK08137, amidase; Provisional 1e-120
PRK06828 491 PRK06828, PRK06828, amidase; Provisional 1e-118
PRK06707 536 PRK06707, PRK06707, amidase; Provisional 3e-89
COG0154 475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 8e-89
pfam01425 431 pfam01425, Amidase, Amidase 1e-78
PRK00012 459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 1e-67
PRK11910 615 PRK11910, PRK11910, amidase; Provisional 3e-63
TIGR00132 460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 4e-59
PRK07488 472 PRK07488, PRK07488, indole acetimide hydrolase; Va 6e-56
PRK07056 454 PRK07056, PRK07056, amidase; Provisional 1e-44
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 2e-37
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 2e-36
PRK09201 465 PRK09201, PRK09201, amidase; Provisional 4e-34
PRK07486 484 PRK07486, PRK07486, amidase; Provisional 8e-32
PRK06565 566 PRK06565, PRK06565, amidase; Validated 2e-31
PRK06102 452 PRK06102, PRK06102, hypothetical protein; Provisio 2e-31
PRK12470462 PRK12470, PRK12470, amidase; Provisional 6e-31
TIGR02715 452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 7e-31
PRK06169 466 PRK06169, PRK06169, putative amidase; Provisional 8e-31
PRK07487 469 PRK07487, PRK07487, amidase; Provisional 6e-30
PRK07235 502 PRK07235, PRK07235, amidase; Provisional 8e-30
PRK05962 424 PRK05962, PRK05962, amidase; Validated 9e-29
PRK06170 490 PRK06170, PRK06170, amidase; Provisional 1e-28
PRK07042 464 PRK07042, PRK07042, amidase; Provisional 1e-28
PRK06061 483 PRK06061, PRK06061, amidase; Provisional 2e-23
PRK07869 468 PRK07869, PRK07869, amidase; Provisional 2e-20
PLN02722 422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 4e-20
PRK08310395 PRK08310, PRK08310, amidase; Provisional 2e-19
PRK07139 439 PRK07139, PRK07139, amidase; Provisional 1e-17
PRK06529 482 PRK06529, PRK06529, amidase; Provisional 5e-14
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information 
 Score =  358 bits (921), Expect = e-120
 Identities = 167/371 (45%), Positives = 216/371 (58%), Gaps = 17/371 (4%)

Query: 36  FSVKEATIEDLQLAFKQNQLTSRQLVEMY---IREIGRLNPLLRGVIEVNPDAINQADKA 92
            +  E     LQ A       + QL   Y   I  I R  P L  VIE+NPDA   A   
Sbjct: 1   QTALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAAL 60

Query: 93  DQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAG 152
           D ERKA   R  L  HGIP+L+KDNI   D M TTAGS AL G+   RDAF+V +L +AG
Sbjct: 61  DAERKAGKVRGPL--HGIPVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAG 118

Query: 153 AIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVS 212
           A+ILGKA++SEWA+FR+  S +GW AR G  +NPY L   PCGSSSGS  +VAA + AV+
Sbjct: 119 AVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVA 178

Query: 213 LGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAI 272
           +GT+TD SI CP+  N +VG+KPTVGL+SRDG++P+S   DT GP+++TVAD   VL AI
Sbjct: 179 IGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAI 238

Query: 273 VGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHV 332
            G D  D AT  A    P   Y   L    L+G RLG+ RN         EV   FE  +
Sbjct: 239 AGGDPADPATASAPA--PAVDYVAALDADALRGARLGVARNY---LGYHPEVDAQFERAL 293

Query: 333 RTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVT-SPVRSLA 391
             L+  GA+++D  ++++ +             +L  EFK  LNAYL+     +PVR+LA
Sbjct: 294 AELKAAGAVVIDVVDLDDGD------WGEAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLA 347

Query: 392 DVIAFNKMFPE 402
           D+IAFN+    
Sbjct: 348 DLIAFNRAQHA 358

Length = 497
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 403
PRK11910 615 amidase; Provisional 100.0
PRK08137 497 amidase; Provisional 100.0
PRK06707 536 amidase; Provisional 100.0
PRK06828 491 amidase; Provisional 100.0
PRK06565 566 amidase; Validated 100.0
COG0154 475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK07487 469 amidase; Provisional 100.0
PRK00012 459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
TIGR00132 460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
PRK06169 466 putative amidase; Provisional 100.0
PRK07486 484 amidase; Provisional 100.0
PRK07488 472 indole acetimide hydrolase; Validated 100.0
PRK06170 490 amidase; Provisional 100.0
PRK07042 464 amidase; Provisional 100.0
PRK09201 465 amidase; Provisional 100.0
PRK06102 452 hypothetical protein; Provisional 100.0
TIGR02715 452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK07056 454 amidase; Provisional 100.0
PF01425 441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
PRK12470 462 amidase; Provisional 100.0
PRK07869 468 amidase; Provisional 100.0
PRK06529 482 amidase; Provisional 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK06061 483 amidase; Provisional 100.0
PRK05962 424 amidase; Validated 100.0
PRK07235 502 amidase; Provisional 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK07139 439 amidase; Provisional 100.0
KOG1211 506 consensus Amidases [Translation, ribosomal structu 100.0
PRK08310 395 amidase; Provisional 100.0
PLN02722 422 indole-3-acetamide amidohydrolase 100.0
KOG1212 560 consensus Amidases [Translation, ribosomal structu 100.0
>PRK11910 amidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.9e-82  Score=663.20  Aligned_cols=338  Identities=36%  Similarity=0.609  Sum_probs=303.8

Q ss_pred             CCcccccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCC---CccEEEEeCHHHHHHHHHHhHHHHHcCCCCCCCCC
Q 041105           32 ESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNP---LLRGVIEVNPDAINQADKADQERKAKAPRSQLGLH  108 (403)
Q Consensus        32 ~~~~~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~---~lna~~~~~~~al~~A~~~D~~~~~~~g~~~gpL~  108 (403)
                      ......+.+.++.+|++++++|++|++|++++||+||+++|+   .+|||++++++++++|+++|+++  ..+  +||||
T Consensus       156 ~~~~~~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~Al~~A~~lD~~~--~~~--~gPL~  231 (615)
T PRK11910        156 EAKEPLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPTIIAEAEQLDKEN--TTN--KSALY  231 (615)
T ss_pred             CcccccchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHHHHHHHHHHHHHh--ccC--CCCcC
Confidence            344456788999999999999999999999999999999997   79999999999999999999987  444  49999


Q ss_pred             CCceeecccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCC
Q 041105          109 GIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYV  188 (403)
Q Consensus       109 GvPi~vKD~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~  188 (403)
                      ||||+|||||+++| |+||+||.++.++++.+||++|+|||+|||||+|||||+||+++.+..+.++||++||+|+||||
T Consensus       232 GIPv~VKDni~t~G-~pTTaGS~al~~~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~  310 (615)
T PRK11910        232 GMPVLLKDNIGTKE-LPTSAGTVALKDWVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYS  310 (615)
T ss_pred             CCEEEEEcCcccCC-CccCcccHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCC
Confidence            99999999999996 99999999999999999999999999999999999999999986665457899999999999999


Q ss_pred             CCCCCCCCChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHH
Q 041105          189 LSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYV  268 (403)
Q Consensus       189 ~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~  268 (403)
                      +.|+|||||||||++||+|++++|+|||||||||+||+||||||||||+|++|+.|++|+++++|++|||||+|+|++.+
T Consensus       311 ~~r~pGGSSsGSAAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~l  390 (615)
T PRK11910        311 SNLDPSGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLT  390 (615)
T ss_pred             CCCCCCCCCchHHHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCC
Q 041105          269 LDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEI  348 (403)
Q Consensus       269 ~~~l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~  348 (403)
                      +++|.|.+..++             +    ....++++||||+.+.     .++++.++++++++.|+++|++|++.+++
T Consensus       391 l~vi~g~~~~~~-------------l----~~~~lkglRIGv~~~~-----~~~~v~~a~~~a~~~L~~~Ga~Vve~~~~  448 (615)
T PRK11910        391 TNALTNTTSNPP-------------L----STDALKGKRIGLLADG-----ESNEETAVIKKIKLDLQKAGATIIEGIAV  448 (615)
T ss_pred             HHHhcCCCCcCc-------------c----CcccCCCCEEEEECCC-----CCHHHHHHHHHHHHHHHHCCCEEEeCCCC
Confidence            999999765331             1    1135788999998652     47889999999999999999999986677


Q ss_pred             CCHHHHHHhhhcccchhccHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhCCC
Q 041105          349 NNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMFPE  402 (403)
Q Consensus       349 p~~~~~~~~~~~~~~~~~~~~e~~~~l~~yl~~~~~~~~~sl~~~i~~~~~~~e  402 (403)
                      |.++....    .+..++ .+|+..++..||+.. ..++++|+|+++||++||+
T Consensus       449 p~~~~~~~----~~~~l~-~~E~~~~l~~yl~~~-~~~v~sL~dl~~fn~~~~~  496 (615)
T PRK11910        449 GEFEQKDT----DYASLL-NADFKHDLNQFLQVN-HSPMSTLESIIQFNQTNPT  496 (615)
T ss_pred             ccHHHHHH----HHHHHH-HHHHHHHHHHHHHhc-CCCCCCHHHHHHHHhcCcc
Confidence            77665443    245666 899999999999754 5679999999999999983

>PRK08137 amidase; Provisional Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
1m21_A 503 Crystal Structure Analysis Of The Peptide Amidase P 6e-65
3h0l_A 478 Structure Of Trna-Dependent Amidotransferase Gatcab 1e-25
3al0_A 475 Crystal Structure Of The Glutamine Transamidosome F 2e-24
2df4_A 485 Structure Of Trna-Dependent Amidotransferase Gatcab 3e-23
3kfu_E 471 Crystal Structure Of The Transamidosome Length = 47 3e-21
2gi3_A 476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 3e-21
2dc0_A434 Crystal Structure Of Amidase Length = 434 1e-17
3a1k_A 521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 3e-16
3a1i_A 521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 8e-16
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 6e-13
3a2p_A 493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 9e-09
3a2q_A 493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 2e-08
1obl_A414 Crystal Structure Of The S133a Mutant Of Malonamida 4e-07
1o9o_A414 Crystal Structure Of The S131a Mutant Of Malonamida 4e-07
1obi_A414 Crystal Structure Of The G130a Mutant Of Malonamida 5e-06
1obk_A414 Crystal Structure Of The R158q Mutant Of Malonamida 6e-06
1ock_A412 The Crystal Structure Of Malonamidase E2 From Brady 7e-06
1o9q_A414 Crystal Structure Of The S155c Mutant Of Malonamida 2e-05
1obj_A414 Crystal Structure Of The T150a Mutant Of Malonamida 2e-05
1o9n_A414 Crystal Structure Of The K62a Mutant Of Malonamidas 3e-05
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure 
Iteration: 1

 Score =  244 bits (623), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 215/370 (58%), Gaps = 26/370 (7%)
Query: 36  FSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIG---RLNPLLRGVIEVNPDAINQADKA 92
           F   E  + DLQ      +L S  L + Y++ I    R  P LR VIE+NPDA+ +A  A
Sbjct: 6   FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEA--A 63
Query: 93  DQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAG 152
           +++R+ +  R +  LHGIP+L+KDNI     M T+AGS AL G   P DA++V +L +AG
Sbjct: 64  ERDRERRDGRLRGPLHGIPLLLKDNI-NAAPMATSAGSLALQG-FRPDDAYLVRRLRDAG 121
Query: 153 AIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVS 212
           A++LGK ++SEWA+FR  +S +GW AR GQ +NPY +S  PC            N+ +V+
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181
Query: 213 LGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAI 272
           +GT+TD SI+CP+  N VVG+KPTVGL+SRDG+IP+S   DT GP++++VAD   VL AI
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAI 241
Query: 273 VGFDAKDEATREASKYIPPG----GYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAF 328
            G D  D AT        PG     Y   L P GL+GKR+G+++   +       +    
Sbjct: 242 AGRDDADPATATM-----PGRAVYDYTARLDPQGLRGKRIGLLQ---TPLLKYRGMPPLI 293
Query: 329 EHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVR 388
           E     LR+ GA+++   E+ N  A     A  E   +L  EFK  L  Y      +P+R
Sbjct: 294 EQAATELRRAGAVVV-PVELPNQGA----WAEAER-TLLLYEFKAGLERYFNTH-RAPLR 346
Query: 389 SLADVIAFNK 398
           SLAD+IAFN+
Sbjct: 347 SLADLIAFNQ 356
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412 Back     alignment and structure
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
1m22_A 503 Peptide amidase, PAM; eleven-stranded beta sheet, 1e-167
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 7e-71
2dc0_A 434 Probable amidase; structural genomics, NPPSFA, nat 2e-69
3kfu_E 471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 7e-67
3ip4_A 485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 8e-67
3h0l_A 478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 4e-66
3a1k_A 521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 8e-60
2gi3_A 476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 5e-59
3a2q_A 493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 1e-57
3ppm_A 573 Fatty-acid amide hydrolase 1; protein-inhibitor co 9e-51
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
 Score =  476 bits (1228), Expect = e-167
 Identities = 161/375 (42%), Positives = 226/375 (60%), Gaps = 18/375 (4%)

Query: 31  TESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLN---PLLRGVIEVNPDAIN 87
           + +  F   E  + DLQ      +L S  L + Y++ I  L+   P LR VIE+NPDA+ 
Sbjct: 1   SRNVPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALK 60

Query: 88  QADKADQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTK 147
           +A + D+ER+    R    LHGIP+L+KDNI     M T+AGS AL G   P DA++V +
Sbjct: 61  EAAERDRERRDGRLRG--PLHGIPLLLKDNINAAP-MATSAGSLALQG-FRPDDAYLVRR 116

Query: 148 LLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAAN 207
           L +AGA++LGK ++SEWA+FR  +S +GW AR GQ +NPY +S  PCGSSSGSA++VAAN
Sbjct: 117 LRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAAN 176

Query: 208 MVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVY 267
           + +V++GT+TD SI+CP+  N VVG+KPTVGL+SRDG+IP+S   DT GP++++VAD   
Sbjct: 177 LASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAA 236

Query: 268 VLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEA 327
           VL AI G D  D AT           Y   L P GL+GKR+G+++           +   
Sbjct: 237 VLTAIAGRDDADPATATMPGRAVY-DYTARLDPQGLRGKRIGLLQTP---LLKYRGMPPL 292

Query: 328 FEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPV 387
            E     LR+ GA+++   E+ N  A   +    E   +L  EFK  L  Y      +P+
Sbjct: 293 IEQAATELRRAGAVVVP-VELPNQGAWAEA----ERT-LLLYEFKAGLERYFNTH-RAPL 345

Query: 388 RSLADVIAFNKMFPE 402
           RSLAD+IAFN+   +
Sbjct: 346 RSLADLIAFNQAHSK 360
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
1m22_A 503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
3ip4_A 485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3h0l_A 478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
2dc0_A 434 Probable amidase; structural genomics, NPPSFA, nat 100.0
3kfu_E 471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
3a2q_A 493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
2gi3_A 476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
3ppm_A 573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
1o9p_A 414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
3a1k_A 521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
Probab=100.00  E-value=2.8e-85  Score=684.00  Aligned_cols=354  Identities=45%  Similarity=0.729  Sum_probs=313.9

Q ss_pred             CCcccccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHC---CCccEEEEeCHHHHHHHHHHhHHHHHcCCCCCCCCC
Q 041105           32 ESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLN---PLLRGVIEVNPDAINQADKADQERKAKAPRSQLGLH  108 (403)
Q Consensus        32 ~~~~~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~---~~lna~~~~~~~al~~A~~~D~~~~~~~g~~~gpL~  108 (403)
                      .+..|++.++++.+|+++|++|++|++||+++||+||+++|   +.+|||++++++|+++|+++|+++  ++|+.+||||
T Consensus         2 ~~~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~   79 (503)
T 1m22_A            2 RNVPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER--RDGRLRGPLH   79 (503)
T ss_dssp             ---CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHH--HTTCCCSTTT
T ss_pred             CCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHHHHHH--HcCCCCCCcC
Confidence            35668899999999999999999999999999999999999   899999999988999999999988  7888899999


Q ss_pred             CCceeecccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCC
Q 041105          109 GIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYV  188 (403)
Q Consensus       109 GvPi~vKD~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~  188 (403)
                      ||||+|||||+++| ++||+||..+.++++ +||++|+|||+||||++||||||||+++.+..+..|+|++||+|+||||
T Consensus        80 GvPi~vKD~~~v~G-~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~  157 (503)
T 1m22_A           80 GIPLLLKDNINAAP-MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYR  157 (503)
T ss_dssp             TCEEEEETTBCCTT-SCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTS
T ss_pred             CceeEeecccccCC-CCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCC
Confidence            99999999999996 999999999999999 9999999999999999999999999986555567899999999999999


Q ss_pred             CCCCCCCCChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHH
Q 041105          189 LSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYV  268 (403)
Q Consensus       189 ~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~  268 (403)
                      +.|+|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++++
T Consensus       158 ~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~  237 (503)
T 1m22_A          158 ISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAV  237 (503)
T ss_dssp             TTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHH
T ss_pred             CCCCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCC
Q 041105          269 LDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEI  348 (403)
Q Consensus       269 ~~~l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~  348 (403)
                      +++|.|+|++|+.+...+. .+..+|...+....++++||||+.+++ .  .+|+++++++++++.|+++||+|++ +++
T Consensus       238 l~vl~g~d~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lrIgv~~~~~-~--~~~~v~~a~~~a~~~L~~~G~~v~~-~~~  312 (503)
T 1m22_A          238 LTAIAGRDDADPATATMPG-RAVYDYTARLDPQGLRGKRIGLLQTPL-L--KYRGMPPLIEQAATELRRAGAVVVP-VEL  312 (503)
T ss_dssp             HHHHCCCCTTCGGGGGCTT-CCCCCGGGGCCTTTTTTCEEEEECSGG-G--GSTTHHHHHHHHHHHHHHTTCEEEE-ECC
T ss_pred             HHHHcCCCCCCcccccccc-ccccchhhhccccCCCCCEEEEECccc-c--CCHHHHHHHHHHHHHHHHcCCEEEE-eCC
Confidence            9999999999976543211 011246555543457899999998754 2  7899999999999999999999997 788


Q ss_pred             CCHHHHHHhhhcccchhccHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhC
Q 041105          349 NNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMF  400 (403)
Q Consensus       349 p~~~~~~~~~~~~~~~~~~~~e~~~~l~~yl~~~~~~~~~sl~~~i~~~~~~  400 (403)
                      |.++++...    ++.++ .+|+..++..|+.... .+++++++++.+++.+
T Consensus       313 p~~~~~~~~----~~~~~-~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  358 (503)
T 1m22_A          313 PNQGAWAEA----ERTLL-LYEFKAGLERYFNTHR-APLRSLADLIAFNQAH  358 (503)
T ss_dssp             TTTTTTHHH----HHHHH-HHHHHHHHHHHHHHTT-CSCCSHHHHHHHHHHT
T ss_pred             CcHHHHHHH----HHHHH-HHHHHHHHHHHHHhcC-cccccHHHHHHHhhhc
Confidence            875533221    34555 7899999999998875 4578999999888655
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 403
d2f2aa1 485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 9e-68
d2gi3a1 475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 4e-54
d1m22a_ 490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 5e-45
d1mt5a_ 537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 2e-35
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 6e-27
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  220 bits (561), Expect = 9e-68
 Identities = 97/366 (26%), Positives = 179/366 (48%), Gaps = 24/366 (6%)

Query: 37  SVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQE 95
           S++  ++E+L    K  ++    +V+     I   +P ++  + ++ + AI +A + D+ 
Sbjct: 2   SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDEL 61

Query: 96  RKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAII 155
           +       +L   GIP+ +KDNI T   + TT  S  L G V   ++ V+ KL +  A++
Sbjct: 62  QAKDQMDGKL--FGIPMGIKDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVL 118

Query: 156 LGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGT 215
           +GK +M E+A   + E+            NP+   A P GSS GSA +VAA +V +SLG+
Sbjct: 119 IGKLNMDEFAMGGSTETSYFKKTV-----NPFDHKAVPGGSSGGSAAAVAAGLVPLSLGS 173

Query: 216 DTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGF 275
           DT  SI  P+    VVG+KPT G +SR G++  +  LD +GP+++ V D   VL+AI G 
Sbjct: 174 DTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233

Query: 276 DAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTL 335
           D  D  +      +    +   +    ++G ++ + +       ++ +V EA ++ V TL
Sbjct: 234 DVNDSTSAP----VDDVDFTSEIGK-DIKGLKVALPKEYL-GEGVADDVKEAVQNAVETL 287

Query: 336 RQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQ---ELVTSPVRSLAD 392
           +  GA+ ++   + N +  + S        I ++E    L+ +        +    SL +
Sbjct: 288 KSLGAV-VEEVSLPNTKFGIPSY-----YVIASSEASSNLSRFDGIRYGYHSKEAHSLEE 341

Query: 393 VIAFNK 398
           +   ++
Sbjct: 342 LYKMSR 347
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
d2f2aa1 485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d1m22a_ 490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
d1mt5a_ 537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d2gi3a1 475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1ocka_412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=9e-82  Score=649.09  Aligned_cols=342  Identities=28%  Similarity=0.427  Sum_probs=304.4

Q ss_pred             ccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHH-HHHHHHHHhHHHHHcCCCCCCCCCCCceeec
Q 041105           37 SVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPILVK  115 (403)
Q Consensus        37 ~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~D~~~~~~~g~~~gpL~GvPi~vK  115 (403)
                      .+...|+.||+++|++|++|++||+++||+||+++|+.+|||++++++ |+++|+++|+++  ++|+.+||||||||+||
T Consensus         2 ~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~--~~~~~~gpL~GiPi~vK   79 (485)
T d2f2aa1           2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ--AKDQMDGKLFGIPMGIK   79 (485)
T ss_dssp             CSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHH--HTTCCCSTTTTCEEEEE
T ss_pred             CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHH--HCCCCCCCcCcCeEEEE
Confidence            577889999999999999999999999999999999999999999998 999999999998  78999999999999999


Q ss_pred             ccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041105          116 DNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCG  195 (403)
Q Consensus       116 D~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~~GG  195 (403)
                      |+|+++| ++||+||.++.++++.+|+++|++|+++|||++|||||+||++     +..+.|.+||+|+||||+.++|||
T Consensus        80 D~~~v~g-~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~-----~~~~~n~~~g~~~NP~~~~~~~GG  153 (485)
T d2f2aa1          80 DNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAM-----GGSTETSYFKKTVNPFDHKAVPGG  153 (485)
T ss_dssp             TTBCBTT-BCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCS
T ss_pred             cccccCC-CccCCcChhhccCCccccccccccccccccccccccchhhhcc-----cccccCccccCcCCCCCcccccCC
Confidence            9999996 9999999999999999999999999999999999999999998     677899999999999999999999


Q ss_pred             CChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHHHHHHhCC
Q 041105          196 SSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGF  275 (403)
Q Consensus       196 SSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~~~~l~g~  275 (403)
                      ||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||+|+|+++++++|.|+
T Consensus       154 SSgGsaaavA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~  233 (485)
T d2f2aa1         154 SSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA  233 (485)
T ss_dssp             SSHHHHHHHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSC
T ss_pred             ccccchhhHHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCCCHHHHH
Q 041105          276 DAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAIL  355 (403)
Q Consensus       276 d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p~~~~~~  355 (403)
                      +++|+.+...    +..+|...+. ..++++|||++.+++.. ..+++++++++++++.|+++|++|++ +++|.++...
T Consensus       234 ~~~d~~~~~~----~~~~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~i~~a~~~a~~~L~~~G~~v~e-v~lp~~~~~~  306 (485)
T d2f2aa1         234 DVNDSTSAPV----DDVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGAVVEE-VSLPNTKFGI  306 (485)
T ss_dssp             BTTBTTSCCC----CCCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGGHH
T ss_pred             cccccccCCC----Cccchhhhhc-CCccCCEEEEEcccccC-cCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCchhhhH
Confidence            9999765433    3335665555 45899999999887665 58999999999999999999999997 8999765443


Q ss_pred             HhhhcccchhccHHHHHHHHHHHHhhc---CCCCCCCHHHHHHhhh
Q 041105          356 NSIANGETLAILAAEFKQALNAYLQEL---VTSPVRSLADVIAFNK  398 (403)
Q Consensus       356 ~~~~~~~~~~~~~~e~~~~l~~yl~~~---~~~~~~sl~~~i~~~~  398 (403)
                      ..    +..+. ..|+..++..|....   .....+++.++.+.++
T Consensus       307 ~~----~~~~~-~~e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~  347 (485)
T d2f2aa1         307 PS----YYVIA-SSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSR  347 (485)
T ss_dssp             HH----HHHHH-HHHHHHHTTTCSSSSSSCCCSSCCSHHHHHHHHH
T ss_pred             HH----HHHHH-HHHHHHHHHHhhhhhhccccccccCHHHHHHHhh
Confidence            22    33344 677777776664322   2233677777766543
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure